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Sample records for acidic tundra mat

  1. Correlations between different acidity forms in amorphous loamy soils of the tundra and taiga zones

    NASA Astrophysics Data System (ADS)

    Shamrikova, E. V.; Sokolova, T. A.

    2013-05-01

    Pair correlation coefficients ( r) between the acidity parameters for the main genetic horizons of soddy-podzolic soils (SPSs), typical podzolic soils (TPSs), gley-podzolic soils (GPSs), and tundra surfacegley soils (TSGSs) have been calculated on the basis of a previously developed database. A significant direct linear correlation has been revealed between the pHwater and pHKCl values in the organic and eluvial horizons of each soil, but the degree of correlation decreased when going from the less acidic SPSs to the more acidic soils of other taxons. This could be related to the fact that, under strongly acid conditions, extra Al3+ was dissolved in the KCl solutions from complex compounds in the organic horizons and from Al hydroxide interlayers in the soil chlorites. No significant linear correlation has been found between the exchangeable acidity ( H exch) and the activity of the [H]+ ions in the KCl extract ( a(H+)KCl) calculated per unit of mass in the organic horizons of the SPSs, but it has been revealed in the organic horizons of the other soils because of the presence of the strongest organic acids in their KCl extracts. The high r values between the H exch and a(H+)KCl in all the soils of the taiga zones have been related to the common source and composition of the acidic components. The correlation between the exchangeable and total ( H tot) acidities in the organic horizons of the podzolic soils has been characterized by high r values because of the common source of the acidity: H+ and probably Al3+ ions located on the functional groups of organic acids. High r values between the H exch and a(H+)KCl have been observed in the mineral horizons of all the soils, because the Al3+ hydroxo complexes occurring on the surface and in the interlayer spaces of the clay minerals were sources of both acidity forms.

  2. Using Discriminant Analysis to Examine Spectral Differences Among Four Tundra Vegetation Communities at Ivotuk, Alaska

    NASA Astrophysics Data System (ADS)

    Bratsch, S.; Epstein, H. E.

    2014-12-01

    Warming in the Arctic has resulted in changes in the distribution and composition of tundra vegetation in addition to a lengthening of the growing season. Past studies have mapped tundra vegetation at relatively coarse spatial scales; however, vegetation changes in the Arctic are occurring at spatial scales within a few meters. This research uses hyperspectral remote sensing data to differentiate among four vegetation communities at Ivotuk, Alaska (68.49°N, 155.74°W). Ivotuk is located on the North Slope, and is dominated by four plant communities including moist acidic tundra (MAT), moist nonacidic tundra (MNT), mossy tussock tundra (MT), and shrub tundra (ST). Hand-held hyperspectral data were collected during the 1999 growing season (5 June-27 August) at biweekly intervals using narrow, ~1.42 nm wavebands. Only wavebands within 400-1060 nm were used in analysis. Two sets of comparisons were conducted using stepwise discriminant analysis: 1) MNT and ST, and 2) all four tundra plant communities. MNT and ST classification accuracy ranged from 91.3-100%, with 100% classification and cross-validated accuracy occurring on 27 July. Classification accuracy for the overall growing season was 97.9% for MNT and 98.1% for ST. The stepwise function indicated 18 significant bands including 8 near infrared (NIR) and 4 blue bands. MAT, MNT, MT, and ST classification accuracy ranged from 58-100%, with greatest classification accuracy (100%) also occurring during peak growing season on 27 July. Overall classification accuracy for the growing season was 97.6% for MNT, 92% for MT, 84% for ST, and 70.8% for MAT. There were 14 significant bands including 6 NIR and 3 blue bands. The results presented here demonstrate that discriminant analysis can be useful in distinguishing among the dominant tundra vegetation communities in the Arctic, and can potentially help us to better understand and monitor arctic vegetation and ecosystem responses to environmental changes.

  3. The Contribution of Moss to Plot-Based Spectral Signals in Moist Acidic Low Arctic Tundra

    NASA Astrophysics Data System (ADS)

    May, J. L.; Beamish, A. L.

    2015-12-01

    To determine the contribution of moss to peak season normalized difference index (NDVI) field measurement of intact vegetation communities were compared to communities with individual species and litter successively removed until only the moss layer remained. Spectral measurements (n=3) were collected using a field radiometer in five upland and five lowland plots in a moist acidic tundra ecosystem at the Imnaviat Creek Watershed, North Slope Alaska. After spectral measurements were taken individual species were removed in the same order in each plot by clipping them at the moss layer. As individual species were removed NDVI values decreased. Decreases were greatest when dwarf shrub species Salix richardsonii sb. pulchra and Betula nana were removed. Notable increases in NDVI were observed once standing litter was removed. The NDVI values of the moss layer were comparable to intact vegetation communities depending on the bryophyte species composition. This suggests that the NDVI signal of moss is largely masked by vascular species but represents a significant factor missing from overall, large-scale NDVI signals. The results of this study corroborate recent data that points to the mismatch between ground based NDVI and aerial and satellite derived NDVI. This preliminary case study provides a strong basis for better characterization of the contribution of moss to NDVI for improved correction of air and space borne imagery.

  4. Complexation of Hg (II) ions with humic acids of tundra soils

    NASA Astrophysics Data System (ADS)

    Vasilevich, Roman

    2013-04-01

    Humic acids (HA) play an important role in processes of heavy metals migration, controlling their geochemical streams in environment. Accumulative and detoxification abilities of HA to heavy metals are realized by means of formation of steady complexes salycylate and pyrocatechin types. Modern researches show that HA of the Arctic and Subarctic areas are poorly enriched by aromatic frames, so and metalbinding centres. The work purpose is to study interaction mechanisms of Hg (II) ions with HA and to define tread possibilities of a tundra soils humic acids. It is established that binding ability of Hg (II) ions depends on concentration of an element, on quantity of functional groups in peripheral and nuclear parts of HA molecule as well as on a solution pH. coomplexation proceeds at pH 2.5-3.5 efficiently. On the basis of kinetic models it is shown that HA interaction with Hg (II) ions, at microconcentration of a pollutant (0.025-5.0 mkmol/dm3), has a zero order of reaction. Rate of a reaction does not depend on initial components concentration and is defined by process of Hg (II) ions diffusion to organic ligands. High correlation of a HA sorption capacity to Hg (II) ions is observed: with the nitrogen content and maintenance of amino groups (according to a 13C-NMR, element composition) and negative correlation - with degree of HA aromaticity. It testifies to primary binding of Hg (II) ions by amino-acid fragments of a HA molecule peripheral part. When concentration of Hg (II) ions increases, binding proceeds on carboxylic and phenolic groups of a molecule nuclear part. Higher order of kinetic models reaction and FTIR spectroscopy data testify to it. Comparison of FTIR spectra of HA preparations and mercury humates, shows that Hg (II) ions binding in humate complexes is carried out mainly by -COOH. Reduction of a spectral line intensity not ionized -COOH at 1700-1720 sm-1 and intensity increases of dissymetric valency vibration at 1610-1650 sm-1 diagnose increase

  5. Dry deposition of ammonia, nitric acid, ammonium, and nitrate to alpine tundra at Niwot Ridge, Colorado

    USGS Publications Warehouse

    Rattray, G.; Sievering, H.

    2001-01-01

    Micrometeorological measurements and ambient air samples, analyzed for concentrations of NH3, HNO3, NH4+, and NO3-, were collected at an alpine tundra site on Niwot Ridge, Colorado. The measured concentrations were extremely low and ranged between 5 and 70ngNm-3. Dry deposition fluxes of these atmospheric species were calculated using the micrometeorological gradient method. The calculated mean flux for NH3 indicates a net deposition to the surface and indicates that NH3 contributed significantly to the total N deposition to the tundra during the August-September measurement period. Our pre-measurement estimate of the compensation point for NH3 in air above the tundra was 100-200ngNm-3; thus, a net emission of NH3 was expected given the low ambient concentrations of NH3 observed. Based on our results, however, the NH3 compensation point at this alpine tundra site appears to have been at or below about 20ngNm-3. Large deposition velocities (>2cms-1) were determined for nitrate and ammonium and may result from reactions with surface-derived aerosols. Copyright (C) 2001 Elsevier Science B.V.Micrometeorological measurements and ambient air samples, analyzed for concentrations of NH3, HNO3, NH4+, and NO3-, were collected at an alpine tundra site on Niwot Ridge, Colorado. The measured concentrations were extremely low and ranged between 5 and 70 ng N m-3. Dry deposition fluxes of these atmospheric species were calculated using the micrometeorological gradient method. The calculated mean flux for NH3 indicates a net deposition to the surface and indicates that NH3 contributed significantly to the total N deposition to the tundra during the August-September measurement period. Our pre-measurement estimate of the compensation point for NH3 in air above the tundra was 100-200 ng N m-3; thus, a net emission of NH3 was expected given the low ambient concentrations of NH3 observed. Based on our results, however, the NH3 compensation point at this alpine tundra site appears to

  6. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

    PubMed

    Beam, Jacob P; Bernstein, Hans C; Jay, Zackary J; Kozubal, Mark A; Jennings, Ryan deM; Tringe, Susannah G; Inskeep, William P

    2016-01-01

    Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA), and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III)-oxide mat ecosystems. Spatial and temporal changes in Fe(III)-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3-3.5; temperature = 68-75°C) in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4-40 days), and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 days, and reached steady-state levels within 14-30 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized near 30 days, and emerged as the dominant functional guild after 70 days and in mature Fe(III)-oxide mats (1-2 cm thick). First-order rate constants of Fe(III)-oxide accretion ranged from 0.046 to 0.05 day(-1), and in situ microelectrode measurements showed that the oxidation of Fe(II) is limited by the diffusion of O2 into the Fe(III)-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III)-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III)-oxide mats are also useful for understanding other Fe(II)-oxidizing systems.

  7. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

    PubMed Central

    Beam, Jacob P.; Bernstein, Hans C.; Jay, Zackary J.; Kozubal, Mark A.; Jennings, Ryan deM.; Tringe, Susannah G.; Inskeep, William P.

    2016-01-01

    Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA), and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III)-oxide mat ecosystems. Spatial and temporal changes in Fe(III)-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3–3.5; temperature = 68–75°C) in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4–40 days), and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 days, and reached steady-state levels within 14–30 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized near 30 days, and emerged as the dominant functional guild after 70 days and in mature Fe(III)-oxide mats (1–2 cm thick). First-order rate constants of Fe(III)-oxide accretion ranged from 0.046 to 0.05 day−1, and in situ microelectrode measurements showed that the oxidation of Fe(II) is limited by the diffusion of O2 into the Fe(III)-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III)-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III)-oxide mats are also useful for understanding other Fe(II)-oxidizing systems. PMID:26913020

  8. Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.

    PubMed

    Beam, Jacob P; Bernstein, Hans C; Jay, Zackary J; Kozubal, Mark A; Jennings, Ryan deM; Tringe, Susannah G; Inskeep, William P

    2016-01-01

    Biomineralized ferric oxide microbial mats are ubiquitous features on Earth, are common in hot springs of Yellowstone National Park (YNP, WY, USA), and form due to direct interaction between microbial and physicochemical processes. The overall goal of this study was to determine the contribution of different community members to the assembly and succession of acidic high-temperature Fe(III)-oxide mat ecosystems. Spatial and temporal changes in Fe(III)-oxide accretion and the abundance of relevant community members were monitored over 70 days using sterile glass microscope slides incubated in the outflow channels of two acidic geothermal springs (pH = 3-3.5; temperature = 68-75°C) in YNP. Hydrogenobaculum spp. were the most abundant taxon identified during early successional stages (4-40 days), and have been shown to oxidize arsenite, sulfide, and hydrogen coupled to oxygen reduction. Iron-oxidizing populations of Metallosphaera yellowstonensis were detected within 4 days, and reached steady-state levels within 14-30 days, corresponding to visible Fe(III)-oxide accretion. Heterotrophic archaea colonized near 30 days, and emerged as the dominant functional guild after 70 days and in mature Fe(III)-oxide mats (1-2 cm thick). First-order rate constants of Fe(III)-oxide accretion ranged from 0.046 to 0.05 day(-1), and in situ microelectrode measurements showed that the oxidation of Fe(II) is limited by the diffusion of O2 into the Fe(III)-oxide mat. The formation of microterracettes also implicated O2 as a major variable controlling microbial growth and subsequent mat morphology. The assembly and succession of Fe(III)-oxide mat communities follows a repeatable pattern of colonization by lithoautotrophic organisms, and the subsequent growth of diverse organoheterotrophs. The unique geochemical signatures and micromorphology of extant biomineralized Fe(III)-oxide mats are also useful for understanding other Fe(II)-oxidizing systems. PMID:26913020

  9. Tundra plant uptake of amino acid and NH{sub 4}{sup +} nitrogen in situ: Plants compete well for amino acid N{sup 1}

    SciTech Connect

    Schimel, J.P.; Chapin, F.S. III

    1996-10-01

    Traditional models of nutrient cycling assume that soil microorganisms must decompose organic matter, releasing inorganic N, to make N available to plants. Several lines of evidence have raised doubts about this assumption in arctic tundra, but no firm evidence existed. Here we demonstrate that Eriophorum vaginatum and Carex aquatilis, two tundra sedges, compete well for glycine and asparate N relative to NH{sub 4}{sup +} in situ. At relatively high concentrations (25 {mu}g N/g soil), during the peak of the season, E. vaginatum took up amino acid N more rapidly than NH{sub 4}{sup +}, while later in the season and at lower concentrations (2-4 {mu}g N/g soil) both E. vaginatum and C. aqualtilis took up glycine N and NH{sub 4}{sup +} at similar rates. These results are incompatible with a simple mechanism of amino acid mineralization followed by plant uptake of the released N. These results indicate that these tundra plants have active mechanisms for enhancing their access to amino acid N in situ. 18 refs., 4 tabs.

  10. Air Pollution and Acid Rain, Report 8. Effects of air pollution and acid rain on fish, wildlife, and their habitats: arctic tundra and alpine meadows

    SciTech Connect

    Olson, J.E.; Adler, D.

    1982-06-01

    This report on arctic tundra and alpine meadow ecosystems is part of a series synthesizing the results of scientific research related to the effects of air pollution and acid deposition on fish and wildlife resources. Recently performed research reveals the growing air pollution problem in arctic tundra and alpine meadow ecosystems once thought to be relatively unpolluted. The ecosystem features which determine sensitivity to air pollution are described. Data related to the effects of air pollutants on biota and whole ecosystems are reviewed. Because very little work has been done on the effects of air pollution specifically in arctic and alpine ecosystems this report includes relevant information based on studies in other ecosystems. Suggestions are made for areas of further research. 68 references, 2 figures.

  11. Seasonal variation in soil nitrogen availability across a fertilization chronosequence in moist acidic tundra

    NASA Astrophysics Data System (ADS)

    McLaren, J. R.; Gough, L.; Weintraub, M. N.

    2012-12-01

    Changes in global climate may result in altered timing of seasonal events including the timing of the spring-thaw and fall freeze-up. In addition to this changing seasonality, arctic environments are experiencing overall increases in nutrient availability caused by climate warming resulting in alterations of plant species composition, such as the observed increases in the abundance of deciduous shrubs. Changing species composition may have large effects on nutrient dynamics in the surrounding ecosystem because of documented differences in how particular plant species influence soil nutrient availability. Although we have some idea of how plant identity influences soil nutrients, soil biogeochemical processes are strongly seasonal, and we have a poor understanding of how plant identity, or nutrient levels, may influence these seasonal patterns. We examined the responses of moist acidic tundra to experimentally increased soil nutrient availability and the accompanying increase in shrub abundance at the Arctic Long Term Ecological Research (LTER) site at Toolik Lake, Alaska. We examined a chrono-sequence of long-term fertilization experiments, composed of experiments fertilized for 5, 15 and 22 years, which has resulted in increasing shrub density with time since fertilization. The fertilized plots receive both nitrogen (N, 10 g/m2/yr) and phosphorus (5 g/m2/yr) annually following snowmelt. In the 2011 growing season we measured variation in soil available N weekly, including measures of ammonium (NH4), nitrate (NO3) and total free amino acids (TFAA). We found that differences between fertilized and control plots depended strongly on both the seasonal timing of measurements, as well as the duration of the fertilization treatment. Early in the growing season fertilization resulted in large increases in available soil N (both NH4 and NO3) across the entire chronosequence. As the season progressed, however, older fertilized plots show evidence of N saturation, where

  12. Spectral indices for remote sensing of phytomass and deciduous shrub changes in Alaskan arctic tundra

    NASA Astrophysics Data System (ADS)

    Kushida, K.; Hobara, S.; Tsuyuzaki, S.; Watanabe, M.; Harada, K.; Kim, Y.; Shaver, G. R.; Fukuda, M.

    2010-12-01

    The relationships between spectral indices, phytomass, and plant functional types were determined by using field observations of a moist acidic tundra (MAT) and a moist non-acidic tundra (MNT) in the Toolik Lake Long Term Ecological Research (LTER) site and a sedge-shrub tundra (SS) in the Arctic National Wildlife Refuge, Alaska, USA. For the MAT and MNT observations, among aboveground phytomass, aboveground vascular phytomass, and vascular plant green phytomass, vascular plant green phytomass was the most sensitive to an exponential function of the normalized difference vegetation index (NDVI). The coefficient of determination (R2) was 0.73. Vascular plant carbon and nitrogen were estimated with exponential functions of NDVI (R2 of 0.57 and 0.53, respectively). For the MAT, MNT, and SS observations, vascular plant green phytomass was more strongly correlated with an exponential function of NDVI (ENDVI, R2 of 0.62) than any other spectral indices. On the other hand, for deciduous shrub green phytomass, the strongest correlation was with a product of an exponential function of NDVI and a spectral index (MIR - RED)/(MIR + RED) (DSSI, R2 of 0.60). Here, MIR and RED denote the bands with wavelengths 2.09-2.35 and 0.63-0.69 µm, respectively. As a result of a regression analysis, 41% of the ENDVI variance and 60% of the DSSI variance were explained by deciduous shrub green phytomass. Up to 38% of the ENDVI variance and up to 10% of the DSSI variance were explained by green phytomass of evergreen shrubs and graminoids, and phytomass of mosses/lichens. These spectral indices were applicable to evaluating tundra plant community changes.

  13. Differential ecophysiological response of deciduous shrubs and a graminoid to long-term experimental snow reductions and additions in moist acidic tundra, Northern Alaska.

    PubMed

    Pattison, Robert R; Welker, Jeffrey M

    2014-02-01

    Changes in winter precipitation that include both decreases and increases in winter snow are underway across the Arctic. In this study, we used a 14-year experiment that has increased and decreased winter snow in the moist acidic tussock tundra of northern Alaska to understand impacts of variation in winter snow depth on summer leaf-level ecophysiology of two deciduous shrubs and a graminoid species, including: instantaneous rates of leaf gas exchange, and δ(13)C, δ(15)N, and nitrogen (N) concentrations of Betula nana, Salix pulchra, and Eriophorum vaginatum. Leaf-level measurements were complemented by measurements of canopy leaf area index (LAI) and depth of thaw. Reductions in snow lowered summer leaf photosynthesis, conductance, and transpiration rates by up to 40% compared to ambient and deep snow conditions for Eriophorum vaginatum, and reduced Salix pulchra conductance and transpiration by up to 49%. In contrast, Betula nana exhibited no changes in leaf gas exchange in response to lower or deeper snow. Canopy LAI increased with added snow, while reduced winter snow resulted in lower growing season soil temperatures and reduced thaw depths. Our findings indicate that the spatial and temporal variability of future snow depth will have individualistic consequences for leaf-level C fixation and water flux by tundra species, and that these responses will be manifested over the longer term by changes in canopy traits, depth of thaw, soil C and N processes, and trace gas (CO2 and H2O) exchanges between the tundra and the atmosphere.

  14. Advances in recombinant battery separator mat (RBSM) separators for lead-acid batteries—a review

    NASA Astrophysics Data System (ADS)

    Zguris, G. C.

    Microglass separators have been used in lead-acid batteries for more than 20 years with excellent results. This type of separator (known as recombinant battery separator mat (RBSM)) has allowed valve-regulated lead-acid (VRLA) battery technology to become a commercial reality. When the concept of the VRLA battery was developed, the requirements of the RBSM separator were not fully known nor appreciated. In many cases, the direction charted for the separator has not been the most beneficial path to follow for separator performance and battery life. In some cases, such as the density of the separator media, experience has shown that the most correct path (low density) does not give rise to long battery life. As VRLA battery technology matures, greater pressure on cost and quality has arisen, especially with the proposed transition to 42 V automotive applications. This paper reviews some of the advances and changes in the RBSM separator made over the last 20 years, and provides some thoughts on future directions for this essential component of the VRLA battery.

  15. Developments in absorptive glass mat separators for cycling applications and 36 V lead-acid batteries

    NASA Astrophysics Data System (ADS)

    Toniazzo, V.; Lambert, U.

    The major markets for valve-regulated lead-acid (VRLA) batteries are undergoing a radical upheaval. In particular, the telecommunications industry requires more reliable power supplies, and the familiar 12 V electrical system in cars will probably be soon replaced by a 36/42 V system, or by other electrical systems if part of the automotive market is taken over by hybrid electrical vehicles (HEVs). In order to meet these new challenges and enable VRLA batteries to provide a satisfactory life in float and cycling applications in the telecommunication field, or in the high-rate-partial-state-of-charge service required by both 36/42 V automobiles and HEVs, the lead-acid battery industry has to improve substantially the quality of present VRLA batteries based on absorptive glass mat (AGM) technology. Therefore, manufacturing steps and cell components have to be optimized, especially AGM separators as these are key components for better production yields and battery performance. This paper shows how the optimal segregation of the coarse and fine fibres in an AGM separator structure can improve greatly the properties of the material. The superior capillarity, springiness and mechanical properties of the 100% glass Amerglass multilayer separator compared with commercial monolayer counterparts with the same specific surface-area is highlighted.

  16. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

    SciTech Connect

    Kozubal, Mark; Romine, Margaret F.; Jennings, Ryan; Jay, Z.; Tringe, Susannah G.; Rusch, Douglas B.; Beam, Jake; McCue, Lee Ann; Inskeep, William P.

    2013-03-01

    Geothermal systems in Yellowstone National Park (YNP) provide an outstanding opportunity to understand the origin and evolution of metabolic processes necessary for life in extreme environments including low pH, high temperature, low oxygen and elevated concentrations of reduced iron. Previous phylogenetic studies of acidic ferric iron mats from YNP have revealed considerable diversity of uncultivated and undescribed archaea. The goal of this study was to obtain replicate de novo genome assemblies for a dominant archaeal population inhabiting acidic iron oxide mats in YNP. Detailed analysis of conserved ribosomal and informational processing genes indicate that the replicate assemblies represent a new phylum-level lineage referred to here as 'novel archaeal group 1 (NAG1)'. The NAG1 organisms contain pathways necessary for the catabolism of peptides and complex carbohydrates as well as a bacterial-like Form I CO dehydrogenase complex likely used for energy conservation. Moreover, this novel population contains genes involved in metabolism of oxygen including a Type A heme copper oxidase, a bd-type terminal oxidase and a putative oxygen sensing protoglobin. NAG1 has a variety of unique bacterial-like cofactor biosynthesis and transport genes and a Type3-like CRISPR system. Discovery of NAG1 is critical to our understanding of microbial community structure and function in extant thermophilic iron mats of YNP, and will provide insight regarding the evolution of Archaea in early Earth environments that may have important analogues active in YNP today.

  17. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.

    PubMed

    Kozubal, Mark A; Romine, Margaret; Jennings, Ryan deM; Jay, Zack J; Tringe, Susannah G; Rusch, Doug B; Beam, Jacob P; McCue, Lee Ann; Inskeep, William P

    2013-03-01

    Geothermal systems in Yellowstone National Park (YNP) provide an outstanding opportunity to understand the origin and evolution of metabolic processes necessary for life in extreme environments including low pH, high temperature, low oxygen and elevated concentrations of reduced iron. Previous phylogenetic studies of acidic ferric iron mats from YNP have revealed considerable diversity of uncultivated and undescribed archaea. The goal of this study was to obtain replicate de novo genome assemblies for a dominant archaeal population inhabiting acidic iron-oxide mats in YNP. Detailed analysis of conserved ribosomal and informational processing genes indicates that the replicate assemblies represent a new candidate phylum within the domain Archaea referred to here as 'Geoarchaeota' or 'novel archaeal group 1 (NAG1)'. The NAG1 organisms contain pathways necessary for the catabolism of peptides and complex carbohydrates as well as a bacterial-like Form I carbon monoxide dehydrogenase complex likely used for energy conservation. Moreover, this novel population contains genes involved in the metabolism of oxygen including a Type A heme copper oxidase, a bd-type terminal oxidase and a putative oxygen-sensing protoglobin. NAG1 has a variety of unique bacterial-like cofactor biosynthesis and transport genes and a Type3-like CRISPR system. Discovery of NAG1 is critical to our understanding of microbial community structure and function in extant thermophilic iron-oxide mats of YNP, and will provide insight regarding the evolution of Archaea in early Earth environments that may have important analogs active in YNP today.

  18. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.

    PubMed

    Kozubal, Mark A; Romine, Margaret; Jennings, Ryan deM; Jay, Zack J; Tringe, Susannah G; Rusch, Doug B; Beam, Jacob P; McCue, Lee Ann; Inskeep, William P

    2013-03-01

    Geothermal systems in Yellowstone National Park (YNP) provide an outstanding opportunity to understand the origin and evolution of metabolic processes necessary for life in extreme environments including low pH, high temperature, low oxygen and elevated concentrations of reduced iron. Previous phylogenetic studies of acidic ferric iron mats from YNP have revealed considerable diversity of uncultivated and undescribed archaea. The goal of this study was to obtain replicate de novo genome assemblies for a dominant archaeal population inhabiting acidic iron-oxide mats in YNP. Detailed analysis of conserved ribosomal and informational processing genes indicates that the replicate assemblies represent a new candidate phylum within the domain Archaea referred to here as 'Geoarchaeota' or 'novel archaeal group 1 (NAG1)'. The NAG1 organisms contain pathways necessary for the catabolism of peptides and complex carbohydrates as well as a bacterial-like Form I carbon monoxide dehydrogenase complex likely used for energy conservation. Moreover, this novel population contains genes involved in the metabolism of oxygen including a Type A heme copper oxidase, a bd-type terminal oxidase and a putative oxygen-sensing protoglobin. NAG1 has a variety of unique bacterial-like cofactor biosynthesis and transport genes and a Type3-like CRISPR system. Discovery of NAG1 is critical to our understanding of microbial community structure and function in extant thermophilic iron-oxide mats of YNP, and will provide insight regarding the evolution of Archaea in early Earth environments that may have important analogs active in YNP today. PMID:23151644

  19. Development of Suberin Fatty Acids and Chloramphenicol-Loaded Antimicrobial Electrospun Nanofibrous Mats Intended for Wound Therapy.

    PubMed

    Tamm, Ingrid; Heinämäki, Jyrki; Laidmäe, Ivo; Rammo, Liisi; Paaver, Urve; Ingebrigtsen, Sveinung G; Škalko-Basnet, Nataša; Halenius, Anna; Yliruusi, Jouko; Pitkänen, Pauliina; Alakurtti, Sami; Kogermann, Karin

    2016-03-01

    Suberin fatty acids (SFAs) isolated from outer birch bark were investigated as an antimicrobial agent and biomaterial in nanofibrous mats intended for wound treatment. Electrospinning (ES) was used in preparing the composite nonwoven nanomats containing chloramphenicol (CAM; as a primary antimicrobial drug), SFAs, and polyvinylpyrrolidone (as a carrier polymer for ES). The X-ray powder diffraction, differential scanning calorimetry, scanning electron microscopy, atomic force microscopy, and texture analysis were used for the physicochemical and mechanical characterization of the nanomats. ES produced nanofibrous mats with uniform structure and with an average fiber diameter ranging from 370 to 425 nm. Microcrystalline SFAs and crystalline CAM were found to undergo a solid-state transformation during ES processing. The ES process caused also the loss of CAM in the final nanofibers. In the texture analysis, the SFAs containing nanofibers exhibited significantly higher maximum detachment force to an isolated pig skin (p < 0.05) than that obtained with the reference nanofibers. CAM exists in an amorphous form in the nanofibers which needs to be taken into account in controlling the physical storage stability. In conclusion, homogeneous composite nanofibrous mats for wound healing can be electrospun from the ternary mixture(s) of CAM, SFAs, and polyvinylpyrrolidone. PMID:26886306

  20. Effect of silver nanoparticles and cellulose nanocrystals on electrospun poly(lactic) acid mats: morphology, thermal properties and mechanical behavior.

    PubMed

    Cacciotti, Ilaria; Fortunati, Elena; Puglia, Debora; Kenny, Josè Maria; Nanni, Francesca

    2014-03-15

    The fabrication of ternary fibrous mats based on poly(lactic) acid (PLA), cellulose nanocrystals (CNCs, both pristine (p-CNCs) and modified with a commercial surfactant (s-CNCs)) and silver (Ag) nanoparticles by electrospinning is reported. Amounts of 1 and 5 wt.% were selected for Ag and CNCs, respectively. Neat PLA and binary PLA/Ag, PLA/p-CNCs and PLA/s-CNCs were produced as references. The CNCs and Ag influence on the microstructural, thermal and mechanical properties was investigated. The Ag and/or p-CNCs addition did not remarkably affect fiber morphology and average size dimension (between (468 ± 111) and (551 ± 122)nm), whereas the s-CNCs presence led to the deposition of a honeycomb-like network on a underneath layer of randomly oriented fibers. The efficiency of the surfactant use in promoting the CNC dispersion was demonstrated. A slight enhancement (e.g. around 25%, in terms of strength) of the mechanical properties of p-CNCs loaded fibers, particularly for PLA/Ag/p-CNCs, was revealed, whereas mats with s-CNCs showed a decrement (e.g. around 35-45%, in terms of strength), mainly imputable to the delamination between the upper honeycomb-like layer and the lower conventional fibrous mat. PMID:24528696

  1. Belowground plant biomass allocation in tundra ecosystems and its relationship with temperature

    NASA Astrophysics Data System (ADS)

    Wang, Peng; Heijmans, Monique M. P. D.; Mommer, Liesje; van Ruijven, Jasper; Maximov, Trofim C.; Berendse, Frank

    2016-05-01

    Climate warming is known to increase the aboveground productivity of tundra ecosystems. Recently, belowground biomass is receiving more attention, but the effects of climate warming on belowground productivity remain unclear. Enhanced understanding of the belowground component of the tundra is important in the context of climate warming, since most carbon is sequestered belowground in these ecosystems. In this study we synthesized published tundra belowground biomass data from 36 field studies spanning a mean annual temperature (MAT) gradient from ‑20 °C to 0 °C across the tundra biome, and determined the relationships between different plant biomass pools and MAT. Our results show that the plant community biomass–temperature relationships are significantly different between above and belowground. Aboveground biomass clearly increased with MAT, whereas total belowground biomass and fine root biomass did not show a significant increase over the broad MAT gradient. Our results suggest that biomass allocation of tundra vegetation shifts towards aboveground in warmer conditions, which could impact on the carbon cycling in tundra ecosystems through altered litter input and distribution in the soil, as well as possible changes in root turnover.

  2. Belowground plant biomass allocation in tundra ecosystems and its relationship with temperature

    NASA Astrophysics Data System (ADS)

    Wang, Peng; Heijmans, Monique M. P. D.; Mommer, Liesje; van Ruijven, Jasper; Maximov, Trofim C.; Berendse, Frank

    2016-05-01

    Climate warming is known to increase the aboveground productivity of tundra ecosystems. Recently, belowground biomass is receiving more attention, but the effects of climate warming on belowground productivity remain unclear. Enhanced understanding of the belowground component of the tundra is important in the context of climate warming, since most carbon is sequestered belowground in these ecosystems. In this study we synthesized published tundra belowground biomass data from 36 field studies spanning a mean annual temperature (MAT) gradient from -20 °C to 0 °C across the tundra biome, and determined the relationships between different plant biomass pools and MAT. Our results show that the plant community biomass-temperature relationships are significantly different between above and belowground. Aboveground biomass clearly increased with MAT, whereas total belowground biomass and fine root biomass did not show a significant increase over the broad MAT gradient. Our results suggest that biomass allocation of tundra vegetation shifts towards aboveground in warmer conditions, which could impact on the carbon cycling in tundra ecosystems through altered litter input and distribution in the soil, as well as possible changes in root turnover.

  3. Soil bacterial community and functional shifts in response to altered snowpack in moist acidic tundra of northern Alaska

    NASA Astrophysics Data System (ADS)

    Ricketts, Michael P.; Poretsky, Rachel S.; Welker, Jeffrey M.; Gonzalez-Meler, Miquel A.

    2016-09-01

    Soil microbial communities play a central role in the cycling of carbon (C) in Arctic tundra ecosystems, which contain a large portion of the global C pool. Climate change predictions for Arctic regions include increased temperature and precipitation (i.e. more snow), resulting in increased winter soil insulation, increased soil temperature and moisture, and shifting plant community composition. We utilized an 18-year snow fence study site designed to examine the effects of increased winter precipitation on Arctic tundra soil bacterial communities within the context of expected ecosystem response to climate change. Soil was collected from three pre-established treatment zones representing varying degrees of snow accumulation, where deep snow ˜ 100 % and intermediate snow ˜ 50 % increased snowpack relative to the control, and low snow ˜ 25 % decreased snowpack relative to the control. Soil physical properties (temperature, moisture, active layer thaw depth) were measured, and samples were analysed for C concentration, nitrogen (N) concentration, and pH. Soil microbial community DNA was extracted and the 16S rRNA gene was sequenced to reveal phylogenetic community differences between samples and determine how soil bacterial communities might respond (structurally and functionally) to changes in winter precipitation and soil chemistry. We analysed relative abundance changes of the six most abundant phyla (ranging from 82 to 96 % of total detected phyla per sample) and found four (Acidobacteria, Actinobacteria, Verrucomicrobia, and Chloroflexi) responded to deepened snow. All six phyla correlated with at least one of the soil chemical properties (% C, % N, C : N, pH); however, a single predictor was not identified, suggesting that each bacterial phylum responds differently to soil characteristics. Overall, bacterial community structure (beta diversity) was found to be associated with snow accumulation treatment and all soil chemical properties

  4. Sulfonic Acid- and Lithium Sulfonate-Grafted Poly(Vinylidene Fluoride) Electrospun Mats As Ionic Liquid Host for Electrochromic Device and Lithium-Ion Battery.

    PubMed

    Zhou, Rui; Liu, Wanshuang; Leong, Yew Wei; Xu, Jianwei; Lu, Xuehong

    2015-08-01

    Electrospun polymer nanofibrous mats loaded with ionic liquids (ILs) are promising nonvolatile electrolytes with high ionic conductivity. The large cations of ILs are, however, difficult to diffuse into solid electrodes, making them unappealing for application in some electrochemical devices. To address this issue, a new strategy is used to introduce proton conduction into an IL-based electrolyte. Poly(vinylidene fluoride-co-hexafluoropropylene) (P(VDF-HFP)) copolymer is functionalized with sulfonic acid through covalent attachment of taurine. The sulfonic acid-grafted P(VDF-HFP) electrospun mats consist of interconnected nanofibers, leading to remarkable improvement in dimensional stability of the mats. IL-based polymer electrolytes are prepared by immersing the modified mats in 1-butyl-3-methylimidazolium tetrafluoroborate (BMIM(+)BF4(-)). It is found that the SO3(-) groups can have Lewis acid-base interactions with the cations (BMIM(+)) of IL to promote the dissociation of ILs, and provide additional proton conduction, resulting in significantly improved ionic conductivity. Using this novel electrolyte, polyaniline-based electrochromic devices show higher transmittance contrast and faster switching behavior. Furthermore, the sulfonic acid-grafted P(VDF-HFP) electrospun mats can also be lithiated, giving additional lithium ion conduction for the IL-based electrolyte, with which Li/LiCoO2 batteries display enhanced C-rate performance.

  5. Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra

    PubMed Central

    Palmer, Katharina; Biasi, Christina; Horn, Marcus A

    2012-01-01

    Cryoturbated peat circles (that is, bare surface soil mixed by frost action; pH 3–4) in the Russian discontinuous permafrost tundra are nitrate-rich ‘hotspots' of nitrous oxide (N2O) emissions in arctic ecosystems, whereas adjacent unturbated peat areas are not. N2O was produced and subsequently consumed at pH 4 in unsupplemented anoxic microcosms with cryoturbated but not in those with unturbated peat soil. Nitrate, nitrite and acetylene stimulated net N2O production of both soils in anoxic microcosms, indicating denitrification as the source of N2O. Up to 500 and 10 μ nitrate stimulated denitrification in cryoturbated and unturbated peat soils, respectively. Apparent maximal reaction velocities of nitrite-dependent denitrification were 28 and 18 nmol N2O gDW−1 h−1, for cryoturbated and unturbated peat soils, respectively. Barcoded amplicon pyrosequencing of narG, nirK/nirS and nosZ (encoding nitrate, nitrite and N2O reductases, respectively) yielded ≈49 000 quality-filtered sequences with an average sequence length of 444 bp. Up to 19 species-level operational taxonomic units were detected per soil and gene, many of which were distantly related to cultured denitrifiers or environmental sequences. Denitrification-associated gene diversity in cryoturbated and in unturbated peat soils differed. Quantitative PCR (inhibition-corrected per DNA extract) revealed higher copy numbers of narG in cryoturbated than in unturbated peat soil. Copy numbers of nirS were up to 1000 × higher than those of nirK in both soils, and nirS nirK−1 copy number ratios in cryoturbated and unturbated peat soils differed. The collective data indicate that the contrasting N2O emission patterns of cryoturbated and unturbated peat soils are associated with contrasting denitrifier communities. PMID:22134649

  6. Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra.

    PubMed

    Palmer, Katharina; Biasi, Christina; Horn, Marcus A

    2012-05-01

    Cryoturbated peat circles (that is, bare surface soil mixed by frost action; pH 3-4) in the Russian discontinuous permafrost tundra are nitrate-rich 'hotspots' of nitrous oxide (N(2)O) emissions in arctic ecosystems, whereas adjacent unturbated peat areas are not. N(2)O was produced and subsequently consumed at pH 4 in unsupplemented anoxic microcosms with cryoturbated but not in those with unturbated peat soil. Nitrate, nitrite and acetylene stimulated net N(2)O production of both soils in anoxic microcosms, indicating denitrification as the source of N(2)O. Up to 500 and 10 μM nitrate stimulated denitrification in cryoturbated and unturbated peat soils, respectively. Apparent maximal reaction velocities of nitrite-dependent denitrification were 28 and 18 nmol N(2)O g(DW)(-1) h(-1), for cryoturbated and unturbated peat soils, respectively. Barcoded amplicon pyrosequencing of narG, nirK/nirS and nosZ (encoding nitrate, nitrite and N(2)O reductases, respectively) yielded ≈49 000 quality-filtered sequences with an average sequence length of 444 bp. Up to 19 species-level operational taxonomic units were detected per soil and gene, many of which were distantly related to cultured denitrifiers or environmental sequences. Denitrification-associated gene diversity in cryoturbated and in unturbated peat soils differed. Quantitative PCR (inhibition-corrected per DNA extract) revealed higher copy numbers of narG in cryoturbated than in unturbated peat soil. Copy numbers of nirS were up to 1000 × higher than those of nirK in both soils, and nirS nirK(-1) copy number ratios in cryoturbated and unturbated peat soils differed. The collective data indicate that the contrasting N(2)O emission patterns of cryoturbated and unturbated peat soils are associated with contrasting denitrifier communities.

  7. Improving cytoactive of endothelial cell by introducing fibronectin to the surface of poly L-Lactic acid fiber mats via dopamine.

    PubMed

    Yang, Wufeng; Zhang, Xiazhi; Wu, Keke; Liu, Xiaoyan; Jiao, Yanpeng; Zhou, Changren

    2016-12-01

    A simple but straightforward approach was reported to prepare fiber mats modified with fibronectin (Fn) protein for endothelial cells activity study. Based on the self-polymerization and strong adhesion feature of dopamine, poly L-Lactic acid (PLLA) fibers mat was modified via simply immersing them into dopamine solution for 16h. Subsequently, Fn was immobilized onto the fiber mats surface by the coupling reactive polydopamine (PDA) layer and Fn. Attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy and X-ray photoelectron spectroscopy (XPS) were used to determine the chemical compositions of fiber mats surface, which confirmed the successful immobilization of PDA and Fn molecules on the fiber surface. Scanning electronic microscopy (SEM) was used to observe the surface morphology changes after modification with PDA and Fn. The data of water contact angle showed that the hydrophilicity of the fiber mats was improved after surface modification. The data of in vitro cell culture proved that the PDA and Fn modified surface significantly enhanced the adhesion, proliferation and cell activity of endothelial cells on the fiber mats. And the release of tumor necrosis factor-α (TNF-α) by endothelial cells on the modified surface was suppressed compared to that on culture plate and PLLA film at 2 and 4days, while the secretion of interleukin-1β (IL-1β) was increased compared to that on culture plate and PLLA film at 2days. PMID:27612725

  8. Improving cytoactive of endothelial cell by introducing fibronectin to the surface of poly L-Lactic acid fiber mats via dopamine.

    PubMed

    Yang, Wufeng; Zhang, Xiazhi; Wu, Keke; Liu, Xiaoyan; Jiao, Yanpeng; Zhou, Changren

    2016-12-01

    A simple but straightforward approach was reported to prepare fiber mats modified with fibronectin (Fn) protein for endothelial cells activity study. Based on the self-polymerization and strong adhesion feature of dopamine, poly L-Lactic acid (PLLA) fibers mat was modified via simply immersing them into dopamine solution for 16h. Subsequently, Fn was immobilized onto the fiber mats surface by the coupling reactive polydopamine (PDA) layer and Fn. Attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy and X-ray photoelectron spectroscopy (XPS) were used to determine the chemical compositions of fiber mats surface, which confirmed the successful immobilization of PDA and Fn molecules on the fiber surface. Scanning electronic microscopy (SEM) was used to observe the surface morphology changes after modification with PDA and Fn. The data of water contact angle showed that the hydrophilicity of the fiber mats was improved after surface modification. The data of in vitro cell culture proved that the PDA and Fn modified surface significantly enhanced the adhesion, proliferation and cell activity of endothelial cells on the fiber mats. And the release of tumor necrosis factor-α (TNF-α) by endothelial cells on the modified surface was suppressed compared to that on culture plate and PLLA film at 2 and 4days, while the secretion of interleukin-1β (IL-1β) was increased compared to that on culture plate and PLLA film at 2days.

  9. Soil bacterial community shifts in response to vegetation and soil temperature change in moist acidic tundra of Northern Alaska

    NASA Astrophysics Data System (ADS)

    Ricketts, M. P.; Gonzalez-Meler, M. A.

    2013-12-01

    The effects of rising temperatures on Earth's ecosystems remain largely unknown and are an active area of research. In temperate systems, plant species often respond directly to climate forcing factors causing complex cascading effects in ecosystem C and nutrient cycling. Similarly, in the Arctic tundra, shifts in aboveground species composition and distribution have been observed in response to warming and other climate change factors, following increases in active layer depth and soil temperature. These abiotic changes provide soil microorganisms access to previously unavailable soil organic matter via thawing soils and increases soil microbial mineralization rates, suggesting that soil microorganisms may be eliciting the plant response. It is hypothesized that this release of nutrients may be providing a competitive advantage to N rich woody species, such as dwarf birch and diamond-leaf willow, over grassy species such as cottongrass tussock. Here we examine how microbial communities respond to increases in soil thermal insulation and vegetative change caused by the accumulation of winter precipitation at a snowfence installed in 1998 at Toolik Field Station, Alaska. In addition to soil temperature, increased snow depth also results in increased surface moisture, soil temperature, and active layer depth. Bacterial phylogenies and relative abundances from soils collected in August of 2012 were determined by sequencing 16S rRNA genes and analyzed using the QIIME software package. We found many significant relative abundance shifts between snow depth treatments (deep, intermediate, low) and soil depths (organic, transition, mineral), most notable of which include in an increase in Deltaproteobacteria in the deep treatment zones, a decrease in Alphaproteobacteria with increased soil depth, and a marked increase in Chloroflexi Anaerolineae (a green non-sulfur bacteria found in a wide range of habitats) in the deep treatment and mineral layers. Other interesting

  10. New York's TUNDRA.

    ERIC Educational Resources Information Center

    Kalinowski, Thomas

    1983-01-01

    Found at the summit of some of the highest peaks of New York State's Adirondack Mountains are low-growing plants similar, and in many cases, identical to plants growing in the Arctic. Describes these plants and the environment in which they are found. Includes a color plate of alpine tundra plants. (Author/JN)

  11. Air jet spinning of hydroxyapatite/poly(lactic acid) hybrid nanocomposite membrane mats for bone tissue engineering.

    PubMed

    Abdal-hay, Abdalla; Sheikh, Faheem A; Lim, Jae Kyoo

    2013-02-01

    The technique for the production of multifunctional scaffolds from bioactive ceramics and biodegradable polymers for use in tissue scaffolds remains challenging. Here, the goal was to fabricate 3D nanocomposite nanofiber scaffolds of nanohydroxyapatite/poly(lactic acid) (nHA/PLA) prepared by air jet spinning (AJS) as a novel and facile composite fabrication process. The characteristics of the fabricated 3D scaffolds were investigated using SEM, water contact angle, DSC, FTIR, XRD analyses and tensile tests. The surface morphology exhibited highly interconnected bonded fibers due to the high fabrication rates. It was also found that the nHA particles were effectively embedded in the fibers' surface due to the difference in the kinetic energies between the nHA particles and polymer molecules. The as-received PLA film showed a low crystallinity value of about 19%, which was expected with the casting process. The crystallinities of the plain PLA and nHA/PLA membrane scaffolds were about 31.78% and 32.21%, respectively. This reveals that HA nanoparticles could engage in a beneficial interaction with the PLA chain molecules during the AJS process. The tensile strength of the membrane PLA mats, particularly the hybrid nanocomposite samples with low nHA contents, was considerably improved compared to that of the PLA casted film. Biological in vitro cell cultures of MC3T3-E1 osteoblast-like cells on the fabricated scaffolds were studied for up to seven days. The nanocomposite membrane mats of nHA/PLA, fabricated by AJS, had highly interconnected fibers. This facile technique has a high production rate and is a new concept of potential interest for bone tissue engineering applications.

  12. Air jet spinning of hydroxyapatite/poly(lactic acid) hybrid nanocomposite membrane mats for bone tissue engineering.

    PubMed

    Abdal-hay, Abdalla; Sheikh, Faheem A; Lim, Jae Kyoo

    2013-02-01

    The technique for the production of multifunctional scaffolds from bioactive ceramics and biodegradable polymers for use in tissue scaffolds remains challenging. Here, the goal was to fabricate 3D nanocomposite nanofiber scaffolds of nanohydroxyapatite/poly(lactic acid) (nHA/PLA) prepared by air jet spinning (AJS) as a novel and facile composite fabrication process. The characteristics of the fabricated 3D scaffolds were investigated using SEM, water contact angle, DSC, FTIR, XRD analyses and tensile tests. The surface morphology exhibited highly interconnected bonded fibers due to the high fabrication rates. It was also found that the nHA particles were effectively embedded in the fibers' surface due to the difference in the kinetic energies between the nHA particles and polymer molecules. The as-received PLA film showed a low crystallinity value of about 19%, which was expected with the casting process. The crystallinities of the plain PLA and nHA/PLA membrane scaffolds were about 31.78% and 32.21%, respectively. This reveals that HA nanoparticles could engage in a beneficial interaction with the PLA chain molecules during the AJS process. The tensile strength of the membrane PLA mats, particularly the hybrid nanocomposite samples with low nHA contents, was considerably improved compared to that of the PLA casted film. Biological in vitro cell cultures of MC3T3-E1 osteoblast-like cells on the fabricated scaffolds were studied for up to seven days. The nanocomposite membrane mats of nHA/PLA, fabricated by AJS, had highly interconnected fibers. This facile technique has a high production rate and is a new concept of potential interest for bone tissue engineering applications. PMID:23107942

  13. Three-layered absorptive glass mat separator with membrane for application in valve-regulated lead-acid batteries

    NASA Astrophysics Data System (ADS)

    Naidenov, V.; Pavlov, D.; Cherneva, M.

    During charge and discharge of the lead-acid cell equal amounts of H 2SO 4 participate in the reactions at the two types of plates (electrodes). However, the charge and discharge reactions at the positive plates involve also 2 mol of water per every mole of reacted PbO 2. Consequently, a concentration difference appears in the electrolyte between the two electrodes (horizontal stratification), which affects the reversibility of the processes at the two electrodes and thus the cycle life of the battery. The present paper proposes the use of a three-layered absorptive glass mat (AGM) separator, the middle layer playing the role of a membrane that divides (separates) the anodic and cathodic electrolyte spaces, and controls the exchange rates of H 2SO 4, H + ions, O 2 and H 2O flows between the two electrode spaces. To be able to perform this membrane function, the thinner middle AGM layer (0.2 mm) is processed with an appropriate polymeric emulsion to acquire balanced hydrophobic/hydrophilic properties, which sustain constant H 2SO 4 concentration in the two electrode spaces during cycling. Three types of polymeric emulsions have been used for treatment of the membrane: (a) polyvinylpyrollidonestyrene (MPVS), (b) polyvinylpyrrolidone "Luviskol" (MPVP), or (c) polytetrafluorethylene modified with Luviskol (MMAGM). It is established experimentally that the MMAGM membrane maintains equal acid concentration in the anodic and cathodic spaces (no horizontal stratification) during battery cycling and hence ensures longer cycle life performance.

  14. Turbulent transports over tundra

    NASA Technical Reports Server (NTRS)

    Fitzjarrald, David R.; Moore, Kathleen E.

    1992-01-01

    An extensive period of eddy correlation surface flux measurements was conducted at a site distant from the coast on the western Alaskan tundra. The surface exchange of heat and moisture over tundra during the summer was limited by a strong resistance to transfer from the upper soil layer through the ground cover, with canopy resistances to evaporation observed to be approximately 200 s/m. Though July 1988 was anomalously warm and dry in the region and August was close to normal temperature and rainfall, there was no appreciable difference in the canopy resistance between the periods. During the dry sunny period at the end of July, the observed evaporation rate was 2 mm/d. High canopy resistance led to an approximate equipartition of net radiation between latent and sensible heat, each accounting for 40 percent of the available energy, with heat balance apparently going into soil heat flux.

  15. Microbial community composition and function across an arctic tundra landscape.

    PubMed

    Zak, Donald R; Kling, George W

    2006-07-01

    Arctic landscapes are characterized by a diversity of ecosystems, which differ in plant species composition, litter biochemistry, and biogeochemical cycling rates. Tundra ecosystems differing in plant composition should contain compositionally and functionally distinct microbial communities that differentially transform dissolved organic matter as it moves downslope from dry, upland to wet, lowland tundra. To test this idea, we studied soil microbial communities in upland tussock, stream-side birch-willow, and lakeside wet sedge tundra in arctic Alaska, USA. These are a series of ecosystems that differ in topographic position, plant composition, and soil drainage. Phospholipid fatty acid (PLFA) analyses, coupled with compound-specific 13C isotope tracing, were used to quantify microbial community composition and function; we also assayed the activity of extracellular enzymes involved in cellulose, chitin, and lignin degradation. Surface soil from each tundra ecosystem was labeled with 13C-cellobiose,13C-N-acetylglucosamine, or 13C-vanillin. After a five-day incubation, we followed the movement of 13C into bacterial and fungal PLFAs, microbial respiration, dissolved organic carbon, and soil organic matter. Microbial community composition and function were distinct among tundra ecosystems, with tussock tundra containing a significantly greater abundance and activity of soil fungi. Although the majority of 13C-labeled substrates rapidly moved into soil organic matter in all tundra soils (i.e., 50-90% of applied 13C), microbial respiration of labeled substrates in wet sedge tundra soil was lower than in tussock and birch-willow tundra; approximately 8% of 13C-cellobiose and approximately 5% of 13C-vanillin was respired in wet sedge soil vs. 26-38% of 13C-cellobiose and 18-21% of 13C-vanillin in the other tundra ecosystems. Despite these differences, wet sedge tundra exhibited the greatest extracellular enzyme activity. Topographic variation in plant litter biochemistry

  16. Osteogenesis of human adipose-derived stem cells on poly(dopamine)-coated electrospun poly(lactic acid) fiber mats.

    PubMed

    Lin, Chi-Chang; Fu, Shu-Juan

    2016-01-01

    Electrospinning is a versatile technique to generate large quantities of micro- or nano-fibers from a wide variety of shapes and sizes of polymer. The aim of this study is to develop functionalized electrospun nano-fibers and use a mussel-inspired surface coating to regulate adhesion, proliferation and differentiation of human adipose-derived stem cells (hADSCs). We prepared poly(lactic acid) (PLA) fibers coated with polydopamine (PDA). The morphology, chemical composition, and surface properties of PDA/PLA were characterized by SEM and XPS. PDA/PLA modulated hADSCs' responses in several ways. Firstly, adhesion and proliferation of hADSCs cultured on PDA/PLA were significantly enhanced relative to those on PLA. Increased focal adhesion kinase (FAK) and collagen I levels and enhanced cell attachment and cell cycle progression were observed upon an increase in PDA content. In addition, the ALP activity and osteocalcin of hADSCs cultured on PDA/PLA were significantly higher than seen in those cultured on a pure PLA mat. Moreover, hADSCs cultured on PDA/PLA showed up-regulation of the ang-1 and vWF proteins associated with angiogenesis differentiation. Our results demonstrate that the bio-inspired coating synthetic degradable PLA polymer can be used as a simple technique to render the surfaces of synthetic biodegradable fibers, thus enabling them to direct the specific responses of hADSCs.

  17. Stress-Survival Gene Identification From an Acid Mine Drainage Algal Mat Community

    NASA Astrophysics Data System (ADS)

    Urbina-Navarrete, J.; Fujishima, K.; Paulino-Lima, I. G.; Rothschild-Mancinelli, B.; Rothschild, L. J.

    2014-12-01

    Microbial communities from acid mine drainage environments are exposed to multiple stressors to include low pH, high dissolved metal loads, seasonal freezing, and desiccation. The microbial and algal communities that inhabit these niche environments have evolved strategies that allow for their ecological success. Metagenomic analyses are useful in identifying species diversity, however they do not elucidate the mechanisms that allow for the resilience of a community under these extreme conditions. Many known or predicted genes encode for protein products that are unknown, or similarly, many proteins cannot be traced to their gene of origin. This investigation seeks to identify genes that are active in an algal consortium during stress from living in an acid mine drainage environment. Our approach involves using the entire community transcriptome for a functional screen in an Escherichia coli host. This approach directly targets the genes involved in survival, without need for characterizing the members of the consortium.The consortium was harvested and stressed with conditions similar to the native environment it was collected from. Exposure to low pH (< 3.2), high metal load, desiccation, and deep freeze resulted in the expression of stress-induced genes that were transcribed into messenger RNA (mRNA). These mRNA transcripts were harvested to build complementary DNA (cDNA) libraries in E. coli. The transformed E. coli were exposed to the same stressors as the original algal consortium to select for surviving cells. Successful cells incorporated the transcripts that encode survival mechanisms, thus allowing for selection and identification of the gene(s) involved. Initial selection screens for freeze and desiccation tolerance have yielded E. coli that are 1 order of magnitude more resistant to freezing (0.01% survival of control with no transcript, 0.2% survival of E. coli with transcript) and 3 orders of magnitude more resistant to desiccation (0.005% survival of

  18. Long-term deeper snow causes changes in litter quality, soil C and N storage in moist acidic tundra in Northern Alaska

    NASA Astrophysics Data System (ADS)

    Miller, O.; Xu, D.; Gonzalez-Meler, M. A.; Welker, J. M.; Filley, T. R.

    2013-12-01

    Tundra ecosystems store over one third of the global terrestrial organic C pool and have the potential to release large amounts of CO2 as organic matter decomposition is expected to increase as climate warms and precipitation changes. However, a warming climate and increased snow pack soil thermal insulation is expected to shift dominant vegetative cover type affecting above and below ground litter quality, soil organic matter storage depth, and decomposition rates in respective soils. These changes can affect the magnitude and even direction of soil C storage in the Arctic tundra.. At a sixteen-year snow fence experiment at Toolik Lake, as part of the International Tundra Experiment (ITEX), increased snow pack resulted in a shift from a Sphagnum moss-dominated mixed graminoid-deciduous ecosystem (moist tussock tundra) to one covered largely by deciduous shrubs and Carex in more water-saturated soil conditions. We investigated relationships between shifting dominance of plant species and impacts to soils using a multiproxy isotope and biomarker approach in plants and soils from the areas with control, deep, intermediate, and low snow pack. A comparison of the same plant species (Betula nana, Carex bigelowii, Eriophorum vaginatum, Salix pulchra, and Sphagnum spp.) along the snow zones showed leaf tissue C-to-N ratio decreasing in the deep snow areas when compared to control and low snow pack areas, driven by an increase in plant N content. Root and stem tissue was impacted similarly across the experimental treatments. Changes in soil δ13C and δ15N values with depth and along the transect demonstrate impacts to C and N cycling. These results demonstrate litter quality and soil carbon storage feedbacks in response to snow pack thermal insulation that could influence litter accumulation, decay rates and the chemical nature of soil carbon under climate conditions with deeper snow in winter.

  19. A Facile Approach for the Mass Production of Submicro/Micro Poly (Lactic Acid) Fibrous Mats and Their Cytotoxicity Test towards Neural Stem Cells

    PubMed Central

    2016-01-01

    Despite many of the studies being conducted, the electrospinning of poly (lactic acid) (PLA), dissolved in its common solvents, is difficult to be continuously processed for mass production. This is due to the polymer solution droplet drying. Besides, the poor stretching capability of the polymer solution limits the production of small diameter fibers. To address these issues, we have examined the two following objectives: first, using an appropriate solvent system for the mass production of fibrous mats with fine-tunable fiber diameters; second, nontoxicity of the mats towards Neural Stem Cell (NSC). To this aim, TFA (trifluoroacetic acid) was used as a cosolvent, in a mixture with DCM (dichloromethane), and the solution viscosity, surface tension, electrical conductivity, and the continuity of the electrospinning process were compared with the solutions prepared with common single solvents. The binary solvent facilitated PLA electrospinning, resulting in a long lasting, stable electrospinning condition, due to the low surface tension and high conductivity of the binary-solvent system. The fiber diameter was tailored from nano to micro by varying effective parameters and examined by scanning electron microscopy (SEM) and image-processing software. Laminin-coated electrospun mats supported NSC expansion and spreading, as examined using AlamarBlue assay and fluorescent microscopy, respectively.

  20. A Facile Approach for the Mass Production of Submicro/Micro Poly (Lactic Acid) Fibrous Mats and Their Cytotoxicity Test towards Neural Stem Cells

    PubMed Central

    2016-01-01

    Despite many of the studies being conducted, the electrospinning of poly (lactic acid) (PLA), dissolved in its common solvents, is difficult to be continuously processed for mass production. This is due to the polymer solution droplet drying. Besides, the poor stretching capability of the polymer solution limits the production of small diameter fibers. To address these issues, we have examined the two following objectives: first, using an appropriate solvent system for the mass production of fibrous mats with fine-tunable fiber diameters; second, nontoxicity of the mats towards Neural Stem Cell (NSC). To this aim, TFA (trifluoroacetic acid) was used as a cosolvent, in a mixture with DCM (dichloromethane), and the solution viscosity, surface tension, electrical conductivity, and the continuity of the electrospinning process were compared with the solutions prepared with common single solvents. The binary solvent facilitated PLA electrospinning, resulting in a long lasting, stable electrospinning condition, due to the low surface tension and high conductivity of the binary-solvent system. The fiber diameter was tailored from nano to micro by varying effective parameters and examined by scanning electron microscopy (SEM) and image-processing software. Laminin-coated electrospun mats supported NSC expansion and spreading, as examined using AlamarBlue assay and fluorescent microscopy, respectively. PMID:27699177

  1. Biogeochemistry of Microbial Mats

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenizi, D. (Technical Monitor)

    2002-01-01

    The hierarchical organization of microbial ecosystems determines the rates of processes that shape Earth's environment, define the stage upon which major evolutionary events occurred, and create biosignatures in sediments and atmospheres. In cyanobacterial mats, oxygenic photosynthesis provides energy, organic substrates and oxygen to the ecosystem. Incident light changes with depth in the mat, both in intensity and spectral composition, and counteracting gradients of oxygen and sulfide shape the chemical microenvironment. A combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods and to various depths in the mat. Microliters produce hydrogen, small organic acids, nitrogen and sulfur species. Such compounds fuel a flow of energy and electrons in these ecosystems and thus shape interactions between groups of microorganisms. Coordinated observations of population distribution, abundance, and activity for an entire community are making fundamental questions in ecology accessible. These questions address those factors that sustain the remarkable diversity of microorganisms that are now being revealed by molecular techniques. These questions also target the processes that shape the various kinds of biosignatures that we will seek, both in ancient rocks from Earth and Mars, and in atmospheres of distant planets beyond our Solar System.

  2. Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., Psychrotolerant, Xylan-Degrading, Bacteria from Alaskan Tundra

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Psychrotolerant, xylan-degrading, strains of bacteria were isolated from soil beneath moist non-acidic and acidic tundra in northern Alaska. Phylogenetic analysis based on 16S rRNA gene sequences revealed that each strain belonged to the genus Paenibacillus. The highest levels of 16S rRNA gene sim...

  3. Shrub tundra snowmelt

    NASA Astrophysics Data System (ADS)

    Pomeroy, J. W.; Bewley, D. S.; Essery, R. L. H.; Hedstrom, N. R.; Link, T.; Granger, R. J.; Sicart, J. E.; Ellis, C. R.; Janowicz, J. R.

    2006-03-01

    Observations of land surface and snowpack energetics and mass fluxes were made over arctic shrub tundra of varying canopy height and density using radiometers, eddy covariance flux measurements, and snow mass changes from snow surveys of depth and density. Over several years, snow accumulation in the shrubs was found to be consistently higher than in sparse tundra due to greater retention of snowfall by all shrubs and wind redistribution of snowfall to tall shrubs. Where snow accumulation was highest due to snow redistribution, shrubs often became buried by the end of winter. Three classes of shrub-snow interactions were observed: tall shrubs that were exposed over snow, tall shrubs that were bent over and buried by snow, and short shrubs buried by snow. Tall shrubs buried by snow underwent spring-up during melt. Though spring-up was episodic for a single shrub, over an area it was a progressive emergence from early to mid melt of vegetation that dramatically altered the radiative and aerodynamic properties of the surface. Short shrubs were exposed more rapidly once snow depth declined below shrub height, usually near the end of melt. Net radiation increased with increasing shrub due to the decreased reflectance of shortwave radiation overwhelming the increased longwave emission from relatively warm and dark shrubs. Net radiation to snow under shrubs was much smaller than that over shrubs, but was greater than that to snow with minimal shrub exposure, in this case the difference was due to downward longwave radiation from the canopy exceeding the effect of attenuated shortwave transmission through the canopy. Because of reduced turbulent transfer under shrub canopies and minimal water vapour contributions from the bare shrub branches, sublimation fluxes declined with increasing shrub exposure. In contrast, sensible heat fluxes to the shrub surface became more negative and those to the underlying snow surface more positive with increasing shrub exposure, because of

  4. USE OF PHOSPHOLIPID FATTY ACID PROFILES TO STUDY THE MICROBIAL COMPOSITION OF CYANOBACTERIAL MATS IN CABO ROJO SOLAR SALTERNS

    EPA Science Inventory

    The Cabo Rojo Saltern located in the West side of Puerto Rico is a hypersaline ecosystem that consists of crystallizer ponds surrounded by series of cyanobacterial mats. Although this ecosystem harbors a variety of microorganisms not much is known about their identity and relati...

  5. The effect of nutrient deposition on bacterial communities in Arctic tundra soil.

    PubMed

    Campbell, Barbara J; Polson, Shawn W; Hanson, Thomas E; Mack, Michelle C; Schuur, Edward A G

    2010-07-01

    The microbial communities of high-latitude ecosystems are expected to experience rapid changes over the next century due to climate warming and increased deposition of reactive nitrogen, changes that will likely affect microbial community structure and function. In moist acidic tundra (MAT) soils on the North Slope of the Brooks Range, Alaska, substantial losses of C and N were previously observed after long-term nutrient additions. To analyse the role of microbial communities in these losses, we utilized 16S rRNA gene tag pyrosequencing coupled with community-level physiological profiling to describe changes in MAT bacterial communities after short- and long-term nutrient fertilization in four sets of paired control and fertilized MAT soil samples. Bacterial diversity was lower in long-term fertilized plots. The Acidobacteria were one of the most abundant phyla in all soils and distinct differences were noted in the distributions of Acidobacteria subgroups between mineral and organic soil layers that were also affected by fertilization. In addition, Alpha- and Gammaproteobacteria were more abundant in long-term fertilized samples compared with control soils. The dramatic increase in sequences within the Gammaproteobacteria identified as Dyella spp. (order Xanthomonadales) in the long-term fertilized samples was confirmed by quantitative PCR (qPCR) in several samples. Long-term fertilization was also correlated with shifts in the utilization of specific substrates by microbes present in the soils. The combined data indicate that long-term fertilization resulted in a significant change in microbial community structure and function linked to changes in carbon and nitrogen availability and shifts in above-ground plant communities.

  6. Micro-structural design and function of an improved absorptive glass mat (AGM) separator for valve-regulated lead-acid batteries

    NASA Astrophysics Data System (ADS)

    Nakayama, Y.; Kishimoto, K.; Sugiyama, S.; Sakaguchi, S.

    Two important properties of absorptive glass mat (AGM) separators are examined in order to design optimum separators for advanced valve-regulated lead-acid (VRLA) batteries. Acid stratification in the separator depends on its micro-glass-fibre diameter, and it is found that the extent of stratification can be estimated based on hydrodynamics theory. Decreasing the plate-group pressure of the separator in the wetted state is also investigated, and it is considered that the phenomenon is caused by the balance between the fibre strength and the surface tension of acid solution. Given these results, the way to design AGM separators according to purpose has been identified. Accordingly, a new AGM separator has been developed and this functions both to suppress stratification and to maintain plate-group pressure.

  7. Archean Microbial Mat Communities

    NASA Astrophysics Data System (ADS)

    Tice, Michael M.; Thornton, Daniel C. O.; Pope, Michael C.; Olszewski, Thomas D.; Gong, Jian

    2011-05-01

    Much of the Archean record of microbial communities consists of fossil mats and stromatolites. Critical physical emergent properties governing the evolution of large-scale (centimeters to meters) topographic relief on the mat landscape are (a) mat surface roughness relative to the laminar sublayer and (b) cohesion. These properties can be estimated for fossil samples under many circumstances. A preliminary analysis of Archean mat cohesion suggests that mats growing in shallow marine environments from throughout this time had cohesions similar to those of modern shallow marine mats. There may have been a significant increase in mat strength at the end of the Archean.

  8. The MAT1-1:MAT1-2 ratio of Sporothrix globosa isolates in Japan.

    PubMed

    Kano, Rui; Tsui, Clement K-M; Hamelin, Richard C; Anzawa, Kazushi; Mochizuki, Takashi; Nishimoto, Katsutaro; Hiruma, Masataro; Kamata, Hiroshi; Hasegawa, Atsuhiko

    2015-02-01

    In order to understand the reproductive biology of pathogenic species in the Sporothrix schenckii complex, we characterized the partial mating type (MAT1-1) loci of Sporothrix schenckii, as well as the S. globosa MAT1-1-1 gene, which encoded 262 amino acid sequences. The data confirmed that the MAT1-1 locus of S. globosa was divergent from the MAT1-2 locus of the opposite mating type, suggesting that the fungus is heterothallic. To determine the mating type ratio of 20 isolates from Japanese patients, we analyzed the MAT loci by specific PCR amplification of MAT1-1-1 and MAT1-2-1 genes. The MAT1-1-1 was detected in 5 isolates but not in the other 15 isolates with the presence of MAT1-2-1. The MAT1-1:1-2 ratio of S. globosa isolates in Japan was estimated to be 1:3. Phylogenetic analysis indicated that the sequences of the MAT1-1-1 were identical among S. globosa isolates but different from S. schenckii and Ophiostoma montium.

  9. Mat2exo

    SciTech Connect

    2012-09-11

    MAT2EXO is a program which translates mesh data from Matlab mat-file format to Exodus II format. This tool is the inverse of the commonly used tool exo2mat which translates Exodus II data to the Matlab mat-file format. These tools provide a means for preprocessing an Exodus II model file or postprocessing an Exodus II results file using Matlab

  10. [The gene pool of native inhabitants of the Samburg tundra].

    PubMed

    Osipova, L P; Posukh, O L; Ivakin, E A; Kriukov, Iu A; Karafet, T M

    1996-06-01

    This study continues a series of investigations of the gene pool of native Siberian ethnic groups. In a population of Tundra Nentsi (Northern Samoyeds) and a group of Komi-Zyryans (Finno-Ugrian) (Samburg settlement, Tyumenskaya oblast, Yamalo-Nenetskii Autonomous okrug), gene markers of the following genetic systems were studied: blood groups (ABO, MNSs, Rhesus, Kell, Duffy, and P), erythrocyte acid phosphatase (AcP), phosphoglucomutase 1 (PGM 1), haptoglobin (Hp), and transferrin (Tf). The population of Samburg Tundra Nentsi was shown to have a close genetic relationship with the "core" of the Forest Nentsi population. In Northern Samoyeds, three carriers of the rare allele K (blood group Kell) were found for the first time. It is suggested that this allele was transferred into the population of Tundra Nentsi from Komi. Samburg Tundra Nentsi are found to have the maximum frequency of the allele PGM 1 (Posphoglucomutase 1) among aboriginal populations of northern Asia. Analysis of original data and the literature revealed a significant genetic distance between the Komi and Northern Samoyed populations. It was shown that Samburg Komi occupy an intermediate position between the clusters of Nenets populations and Finno-Ugrians (Komi) living in Komi Republic.

  11. Methanogenesis at low temperatures by microflora of tundra wetland soil.

    PubMed

    Kotsyurbenko, O R; Nozhevnikova, A N; Soloviova, T I; Zavarzin, G A

    1996-01-01

    Active methanogenesis from organic matter contained in soil samples from tundra wetland occurred even at 6 degrees C. Methane was the only end product in balanced microbial community with H2/CO2 as a substrate, besides acetate was produced as an intermediate at temperatures below 10 degrees C. The activity of different microbial groups of methanogenic community in the temperature range of 6-28 degrees C was investigated using 5% of tundra soil as inoculum. Anaerobic microflora of tundra wetland fermented different organic compounds with formation of hydrogen, volatile fatty acids (VFA) and alcohols. Methane was produced at the second step. Homoacetogenic and methanogenic bacteria competed for such substrates as hydrogen, formate, carbon monoxide and methanol. Acetogens out competed methanogens in an excess of substrate and low density of microbial population. Kinetic analysis of the results confirmed the prevalence of hydrogen acetogenesis on methanogenesis. Pure culture of acetogenic bacteria was isolated at 6 degrees C. Dilution of tundra soil and supply with the excess of substrate disbalanced the methanoigenic microbial community. It resulted in accumulation of acetate and other VFA. In balanced microbial community obviously autotrophic methanogens keep hydrogen concentration below a threshold for syntrophic degradation of VFA. Accumulation of acetate- and H2/CO2-utilising methanogens should be very important in methanogenic microbial community operating at low temperatures. PMID:8678482

  12. Seasonal variation of ecosystem respiration delta 13C in response to experimental permafrost thaw and vegetation removal in moist acidic tundra

    NASA Astrophysics Data System (ADS)

    Mauritz, M.; Pegoraro, E.; Salmon, V. G.; Natali, S.; Schuur, E.

    2015-12-01

    Permafrost soils store twice as much carbon (C) as is contained in the atmosphere and about one-third of global soil C. Under a warmer future climate, permafrost is expected to thaw and decompose, releasing C to the atmosphere, further amplifying global warming. However, studies show that warmer arctic temperatures promote plant growth, in addition to stimulating losses from the soil C pool. Using delta 13C of ecosystem respiration (Reco) during the seasonal cycle of active layer thaw, we seek to understand the effect of permafrost thaw on the relative contributions from microbial decomposition of soil C and more recently fixed, plant-dominated C. We measured weekly CO2 flux rates and delta 13C of Reco from experimentally warmed plots with rapid permafrost thaw and control thaw. Vegetation removal plots, in un-warmed tundra, were monitored to isolate the seasonal contributions from soil alone. We expected delta 13C to be dominated by plant activity in vegetated plots, particularly in areas with greater permafrost thaw because they have highest plant biomass. In vegetation removal plots we expected to see greater contribution from deep soil as seasonal thaw progressed. From May to July delta 13C was extremely variable early in the growing season, but became more uniform as vegetation greened and thaw deepened. In vegetated plots CO2 fluxes doubled, but remained constant in vegetation removal plots. This indicates that, with thaw, microbes had access to a more spatially uniform C substrate, but this had little effect on the magnitude of CO2 flux. Overall delta 13C in rapidly thawed plots was least enriched (-29.4 ‰), control plots intermediate (-28.9 ‰), and vegetation removal plots were most enriched (-28.5 ‰). This suggests that in vegetation removal plots microbes used more decomposed soil C as substrate, and much of the increase in CO2 flux in vegetated plots was the result of C recently fixed and contributed by plants.

  13. Aboveground and belowground responses to nutrient additions and herbivore exclusion in Arctic tundra ecosystems in northern Alaska

    NASA Astrophysics Data System (ADS)

    Moore, J. C.; Gough, L.; Simpson, R.; Johnson, D. R.

    2011-12-01

    The Arctic has experienced significant increased regional warming over the past 30 years. Warming generally increases tundra soil nutrient availability by creating a more favorable environment for plant growth, decomposition and nutrient mineralization. Aboveground there has been a "greening" of the Arctic with increased net primary productivity (NPP), and an increase in woody vegetation. Concurrent with the changes aboveground has been an increase in root growth at lower depths and a loss of soil organic C (40 -100 g C m-2 yr-1). Given that arctic soils contain 14% of the global soil C pool, understanding the mechanisms behind shifts of this magnitude that are changing arctic soils from a net sink to a net source of atmospheric C is critical. We took an integrated multi-trophic level approach to examine how altering soil nutrients and mammalian herbivore activity affects vegetation, soil fauna, and microbial communities as well as soil physical characteristics in moist acidic (MAT) and dry heath (DH) tundra. Our work was conducted at the Arctic LTER site in northern Alaska. We sampled the nutrient (controls and annual N+P additions) and herbivore (controls and exclosures) manipulations established in 1996 after 10 years of treatment. Models that incorporated the biomass estimates from the field were used to characterize the trophic structure of the belowground food web and to estimate carbon flux among soil organisms and C-mineralization rates. Both MAT and DH exhibited significant increases in NPP and root growth and changes in vegetation structure with transitions from a mixed community to deciduous shrubs in MAT and from lichens to grasses and shrubs in DH, with nutrient additions and herbivore exclosures. Belowground responses to the treatments were dependent on ecosystem type, but exposed alterations in trophic structure that included changes in microbial biomass, the establishment of microbivorous enchytreaids, increases in root-feeding nematodes, and

  14. Controls over nutrient flow through plants and microbes in Arctic tundra. Final report

    SciTech Connect

    Schimel, J.

    1994-02-01

    Ecosystem productivity in the Arctic is strongly controlled by N availability to plants. Thus, disturbances to the Arctic system are likely to have their greatest impacts by altering the supply of nutrients to plants. Thus, to understand the dynamics of Arctic tundra, a complete understanding of the controls on N cycling in tundra soils is necessary. This project focused on understanding nutrient dynamics in arctic tussock tundra, specifically evaluating the role of microbial uptake and competition for nutrients as a control on plant N-uptake. The project consisted of several major components: Short- and long-term partitioning of NH{sub 4}{sup +} in tussock tundra (1990--1991); Measurement of NH{sub 4}{sup +} uptake rates by Eriophorum vaginatum and by soil microbes; Determination of microbial NH{sub 4}{sup +} and NO{sub 3}{minus} uptake kinetics; and Determination of the partitioning of NH{sub 4}{sup +} and amino acids between E. vaginatum and soil microbes.

  15. Deposition of ozone to tundra

    NASA Technical Reports Server (NTRS)

    Jacob, D. J.; Fan, S.-M.; Wofsy, S. C.; Spiro, P. A.; Bakwin, P. S.; Ritter, J. A.; Browell, E. V.; Gregory, G. L.; Fitzjarrald, D. R.; Moore, K. E.

    1992-01-01

    Eddy correlation measurements of O3 deposition fluxes to tundra during the Arctic Boundary Layer Expedition (ABLE 3A) are reported. The mean O3 deposition velocity was 0.24 cm/s in the daytime and 0.12 cm/s at night. The day-to-day difference in deposition velocity was driven by both atmospheric stability and surface reactivity. The mean surface resistance to O3 deposition was 2.6 s/cm in the daytime and 3.4 s/cm at night. The relatively low surface resistance at night is attributed to light-insensitive uptake of O3 at dry upland tundra surfaces. The small day-tonight difference in surface resistance is attributed to additional stomatal uptake by wet meadow tundra plants in the daytime. The mean O3 deposition flux to the world north of 60 deg N in July-August is estimated at 8.2 x 10 exp 10 molecules/sq cm/s. Suppression of photochemical loss by small anthropogenic inputs of nitrogen oxides could have a major effect on O3 concentrations in the summertime Arctic troposphere.

  16. Deposition of ozone to tundra

    SciTech Connect

    Jacob, D.J.; Fan, S.M.; Wofsy, S.C.; Spiro, P.A.; Bakwin, P.S.; Ritter, J.A.; Browell, E.V.; Gregory, G.L.; Fitzjarrald, D.R.; Moore, K.E. NASA, Langley Research Center, Hampton, VA New York State Univ., Albany )

    1992-10-01

    Eddy correlation measurements of O3 deposition fluxes to tundra during the Arctic Boundary Layer Expedition (ABLE 3A) are reported. The mean O[sub 3] deposition velocity was 0.24 cm/s in the daytime and 0.12 cm/s at night. The day-to-day difference in deposition velocity was driven by both atmospheric stability and surface reactivity. The mean surface resistance to O[sub 3] deposition was 2.6 s/cm in the daytime and 3.4 s/cm at night. The relatively low surface resistance at night is attributed to light-insensitive uptake of O[sub 3] at dry upland tundra surfaces. The small day-tonight difference in surface resistance is attributed to additional stomatal uptake by wet meadow tundra plants in the daytime. The mean O[sub 3] deposition flux to the world north of 60 deg N in July-August is estimated at 8.2 x 10 exp 10 molecules/sq cm/s. Suppression of photochemical loss by small anthropogenic inputs of nitrogen oxides could have a major effect on O[sub 3] concentrations in the summertime Arctic troposphere. 34 refs.

  17. Microbial communities and exopolysaccharides from Polynesian mats.

    PubMed

    Rougeaux, H; Guezennec, M; Che, L M; Payri, C; Deslandes, E; Guezennec, J

    2001-03-01

    Microbial mats present in two shallow atolls of French Polynesia were characterized by high amounts of exopolysaccharides associated with cyanobacteria as the predominating species. Cyanobacteria were found in the first centimeters of the gelatinous mats, whereas deeper layers showing the occurrence of the sulfate reducers Desulfovibrio and Desulfobacter species as determined by the presence of specific biomarkers. Exopolysaccharides were extracted from these mats and partially characterized. All fractions contained both neutral sugars and uronic acids with a predominance of the former. The large diversity in monosaccharides can be interpreted as the result of exopolymer biosynthesis by either different or unidentified cyanobacterial species. PMID:14961381

  18. Microbial Iron Oxidation in the Arctic Tundra and Its Implications for Biogeochemical Cycling

    PubMed Central

    Scott, Jarrod J.; Benes, Joshua; Bowden, William B.

    2015-01-01

    The role that neutrophilic iron-oxidizing bacteria play in the Arctic tundra is unknown. This study surveyed chemosynthetic iron-oxidizing communities at the North Slope of Alaska near Toolik Field Station (TFS) at Toolik Lake (lat 68.63, long −149.60). Microbial iron mats were common in submerged habitats with stationary or slowly flowing water, and their greatest areal extent is in coating plant stems and sediments in wet sedge meadows. Some Fe-oxidizing bacteria (FeOB) produce easily recognized sheath or stalk morphotypes that were present and dominant in all the mats we observed. The cool water temperatures (9 to 11°C) and reduced pH (5.0 to 6.6) at all sites kinetically favor microbial iron oxidation. A microbial survey of five sites based on 16S rRNA genes found a predominance of Proteobacteria, with Betaproteobacteria and members of the family Comamonadaceae being the most prevalent operational taxonomic units (OTUs). In relative abundance, clades of lithotrophic FeOB composed 5 to 10% of the communities. OTUs related to cyanobacteria and chloroplasts accounted for 3 to 25% of the communities. Oxygen profiles showed evidence for oxygenic photosynthesis at the surface of some mats, indicating the coexistence of photosynthetic and FeOB populations. The relative abundance of OTUs belonging to putative Fe-reducing bacteria (FeRB) averaged around 11% in the sampled iron mats. Mats incubated anaerobically with 10 mM acetate rapidly initiated Fe reduction, indicating that active iron cycling is likely. The prevalence of iron mats on the tundra might impact the carbon cycle through lithoautotrophic chemosynthesis, anaerobic respiration of organic carbon coupled to iron reduction, and the suppression of methanogenesis, and it potentially influences phosphorus dynamics through the adsorption of phosphorus to iron oxides. PMID:26386054

  19. Microbial iron oxidation in the Arctic tundra and its implications for biogeochemical cycling.

    PubMed

    Emerson, David; Scott, Jarrod J; Benes, Joshua; Bowden, William B

    2015-12-01

    The role that neutrophilic iron-oxidizing bacteria play in the Arctic tundra is unknown. This study surveyed chemosynthetic iron-oxidizing communities at the North Slope of Alaska near Toolik Field Station (TFS) at Toolik Lake (lat 68.63, long -149.60). Microbial iron mats were common in submerged habitats with stationary or slowly flowing water, and their greatest areal extent is in coating plant stems and sediments in wet sedge meadows. Some Fe-oxidizing bacteria (FeOB) produce easily recognized sheath or stalk morphotypes that were present and dominant in all the mats we observed. The cool water temperatures (9 to 11°C) and reduced pH (5.0 to 6.6) at all sites kinetically favor microbial iron oxidation. A microbial survey of five sites based on 16S rRNA genes found a predominance of Proteobacteria, with Betaproteobacteria and members of the family Comamonadaceae being the most prevalent operational taxonomic units (OTUs). In relative abundance, clades of lithotrophic FeOB composed 5 to 10% of the communities. OTUs related to cyanobacteria and chloroplasts accounted for 3 to 25% of the communities. Oxygen profiles showed evidence for oxygenic photosynthesis at the surface of some mats, indicating the coexistence of photosynthetic and FeOB populations. The relative abundance of OTUs belonging to putative Fe-reducing bacteria (FeRB) averaged around 11% in the sampled iron mats. Mats incubated anaerobically with 10 mM acetate rapidly initiated Fe reduction, indicating that active iron cycling is likely. The prevalence of iron mats on the tundra might impact the carbon cycle through lithoautotrophic chemosynthesis, anaerobic respiration of organic carbon coupled to iron reduction, and the suppression of methanogenesis, and it potentially influences phosphorus dynamics through the adsorption of phosphorus to iron oxides.

  20. Absorptive glass mat separator surface modification and its influence on the heat generation in valve-regulated lead-acid battery

    NASA Astrophysics Data System (ADS)

    Drenchev, Boris; Dimitrov, Mitko; Boev, Victor; Aleksandrova, Albena

    2015-04-01

    This paper presents the results from a comparative study between two types of valve-regulated lead-acid battery cells, with uncoated and polymer composite coated absorptive glass mat (AGM) separators. The volt-ampere characteristics of the studied cells, recorded at different ambient temperatures, show that the cells with polymer coated separators have significantly lower overcharge (recombinant) current than the cells with conventional untreated AGM separator. During overcharge, the higher recombinant current in the cells with plain separator leads to higher cell temperature than that of the cells with polymer coated AGM separator. The possibility to avoid thermal runaway (TR) is also illustrated during polarization of the cells at 2.65 V. After 320 h, a conventional cell has C/4 current (trend to TR), while the cells with composite coating sustain low (C/26) constant current for long period of time (at least 650 h). The cycle life test indicates stable operation of the cells with coated separator, while the conventional cell reaches high recombinant current and thus, it is susceptible to thermal runaway phenomena.

  1. Isolate-specific effects of ultraviolet radiation on photosynthesis, growth and mycosporine-like amino acids in the microbial mat-forming cyanobacterium Microcoleus chthonoplastes.

    PubMed

    Pattanaik, Bagmi; Roleda, Michael Y; Schumann, Rhena; Karsten, Ulf

    2008-03-01

    Microcoleus chthonoplastes constitutes one of the dominant microorganisms in intertidal microbial mat communities. In the laboratory, the effects of repeated daily exposure to ultraviolet radiation (16:8 light:dark cycle) was investigated in unicyanobacterial cultures isolated from three different localities (Baltic Sea = WW6; North Sea = STO and Brittany = BRE). Photosynthesis and growth were measured in time series (12-15 days) while UV-absorbing mycosporine-like amino acids (MAAs) and cellular integrity were determined after 12 and 3 days exposure to three radiation treatments [PAR (22 mumol photon m(-2) s(-1)) = P; PAR + UV-A (8 W m(-2)) = PA; PAR + UV-A + UV-B (0.4 W m(-2)) = PAB]. Isolate-specific responses to UVR were observed. The proximate response to radiation stress after 1-day treatment showed that isolate WW6 was the most sensitive to UVR. However, repeated exposure to radiation stress indicated that photosynthetic efficiency (F (v)/F (m)) of WW6 acclimated to UVR. Conversely, although photosynthesis in STO exhibited lower reduction in F (v)/F (m) during the first day, the values declined over time. The BRE isolate was the most tolerant to radiation stress with the lowest reduction in F (v)/F (m )sustained over time. While photosynthetic efficiencies of different isolates were able to acclimate to UVR, growth did not. The discrepancy seems to be due to the higher cell density used for photosynthesis compared to the growth measurement. Apparently, the cell density used for photosynthesis was not high enough to offer self-shading protection because cellular damage was also observed in those filaments under UVR. Most likely, the UVR acclimation of photosynthesis reflects predominantly the performance of the surviving cells within the filaments. Different strategies were observed in MAAs synthesis. Total MAAs content in WW6 was not significantly different between all the radiation treatments. In contrast, the additional fluence of UV-A and UV

  2. Micro-hybrid electric vehicle application of valve-regulated lead-acid batteries in absorbent glass mat technology: Testing a partial-state-of-charge operation strategy

    NASA Astrophysics Data System (ADS)

    Schaeck, S.; Stoermer, A. O.; Hockgeiger, E.

    The BMW Group has launched two micro-hybrid functions in high volume models in order to contribute to reduction of fuel consumption in modern passenger cars. Both the brake energy regeneration (BER) and the auto-start-stop function (ASSF) are based on the conventional 14 V vehicle electrical system and current series components with only little modifications. An intelligent control algorithm of the alternator enables recuperative charging in braking and coasting phases, known as BER. By switching off the internal combustion engine at a vehicle standstill the idling fuel consumption is effectively reduced by ASSF. By reason of economy and package a lead-acid battery is used as electrochemical energy storage device. The BMW Group assembles valve-regulated lead-acid (VRLA) batteries in absorbent glass mat (AGM) technology in the micro-hybrid electrical power system since special challenges arise for the batteries. By field data analysis a lower average state-of-charge (SOC) due to partial state-of-charge (PSOC) operation and a higher cycling rate due to BER and ASSF are confirmed in this article. Similar to a design of experiment (DOE) like method we present a long-term lab investigation. Two types of 90 Ah VRLA AGM batteries are operated with a test bench profile that simulates the micro-hybrid vehicle electrical system under varying conditions. The main attention of this lab testing is focused on capacity loss and charge acceptance over cycle life. These effects are put into context with periodically refresh charging the batteries in order to prevent accelerated battery aging due to hard sulfation. We demonstrate the positive effect of refresh chargings concerning preservation of battery charge acceptance. Furthermore, we observe moderate capacity loss over 90 full cycles both at 25 °C and at 3 °C battery temperature.

  3. Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins.

    PubMed

    Plotka, Magdalena; Kaczorowska, Anna-Karina; Stefanska, Aleksandra; Morzywolek, Agnieszka; Fridjonsson, Olafur H; Dunin-Horkawicz, Stanislaw; Kozlowski, Lukasz; Hreggvidsson, Gudmundur O; Kristjansson, Jakob K; Dabrowski, Slawomir; Bujnicki, Janusz M; Kaczorowski, Tadeusz

    2014-02-01

    In this study, we present the discovery and characterization of a highly thermostable endolysin from bacteriophage Ph2119 infecting Thermus strain MAT2119 isolated from geothermal areas in Iceland. Nucleotide sequence analysis of the 16S rRNA gene affiliated the strain with the species Thermus scotoductus. Bioinformatics analysis has allowed identification in the genome of phage 2119 of an open reading frame (468 bp in length) coding for a 155-amino-acid basic protein with an Mr of 17,555. Ph2119 endolysin does not resemble any known thermophilic phage lytic enzymes. Instead, it has conserved amino acid residues (His(30), Tyr(58), His(132), and Cys(140)) that form a Zn(2+) binding site characteristic of T3 and T7 lysozymes, as well as eukaryotic peptidoglycan recognition proteins, which directly bind to, but also may destroy, bacterial peptidoglycan. The purified enzyme shows high lytic activity toward thermophiles, i.e., T. scotoductus (100%), Thermus thermophilus (100%), and Thermus flavus (99%), and also, to a lesser extent, toward mesophilic Gram-negative bacteria, i.e., Escherichia coli (34%), Serratia marcescens (28%), Pseudomonas fluorescens (13%), and Salmonella enterica serovar Panama (10%). The enzyme has shown no activity against a number of Gram-positive bacteria analyzed, with the exception of Deinococcus radiodurans (25%) and Bacillus cereus (15%). Ph2119 endolysin was found to be highly thermostable: it retains approximately 87% of its lytic activity after 6 h of incubation at 95°C. The optimum temperature range for the enzyme activity is 50°C to 78°C. The enzyme exhibits lytic activity in the pH range of 6 to 10 (maximum at pH 7.5 to 8.0) and is also active in the presence of up to 500 mM NaCl.

  4. Changes in tundra vascular plant biomass over thirty years at Imnavait Creek, Alaska, and current ecosystem C and N dynamics.

    NASA Astrophysics Data System (ADS)

    Bret-Harte, M. S.; Shaver, G. R.; Euskirchen, E. S.; Huebner, D. C.; Drew, J. W.; Cherry, J. E.; Edgar, C.

    2015-12-01

    Understanding the magnitude of, and controls over, carbon fluxes in arctic ecosystems is essential for accurate assessment and prediction of their responses to climate change. In 2013, we harvested vegetation and soils in the most common plant community types in source areas for fluxes measured by eddy covariance towers located in three representative Alaska tundra ecosystems along a toposequence (a ridge site of heath tundra and moist non-acidic tundra, a mid-slope site of moist acidic tussock tundra, and a valley bottom site of wet sedge tundra and moist acidic tussock tundra) at Imnavait Creek, Alaska. This harvest sought to relate biomass, production, composition, and C and N stocks in soil and vegetation, to estimates of net ecosystem CO2 exchange obtained by micrometeorological methods. Soil C and N stocks in the seasonally unfrozen soil layer were greatest in the wet sedge community, and least in the heath community. In contrast, moist acidic tussock tundra at the valley bottom site had the highest C and N stocks in vascular plant biomass, while nearby wet sedge tundra had the lowest. Overall, soil C:N ratio was highest in moist acidic tussock tundra at the mid-slope site. Aboveground biomass of vascular plants in moist acidic tundra at the mid-slope site was nearly three times higher than that measured thirty years earlier in vegetation harvests of nearby areas at Imnavait Creek. Other harvests from sites near Toolik Field Station suggest that vascular plant biomass in moist acidic tundra has increased in multiple sites over this time period. Increased biomass in the mid-1990s corresponds with a switch from mostly negative to mostly positive spatially-averaged air temperature anomalies in the climate record. All our sites have been annual net sources of CO2 to the atmosphere over nine years of measurement, but in the last two years, the valley bottom site has been a particularly strong source, due to CO2 losses in fall and winter that correspond with a

  5. Biogeochemical modeling of tundra recovery following thermal erosion of permafrost

    NASA Astrophysics Data System (ADS)

    Pearce, A. R.; Rastetter, E. B.; Bowden, W. B.

    2011-12-01

    We simulate the biogeochemical recovery of tundra from a thermal erosion disturbance using the Multiple Element Limitation model (MEL) and compare model results with soil organic matter and nutrient chemistry measurements collected across a chronosequence of thermal erosion features. Thermal erosion of permafrost initially depletes the tundra of much of its vegetation and shallow soil organic matter. However, several decades later, there is often little distinguishing these scars from the surrounding undisturbed tundra. As thermal erosion features become more abundant on the arctic landscape, we desire to understand how the pools of carbon and nutrients rebuild after these disturbances. MEL is a plot-scale, process-based model that optimizes the acquisition of eight resources (light, water, CO2, PO4, NH4, NO3, DON and N-fixation) by vegetation based on how much of each is required and the effort needed to acquire it. Model output includes pool sizes of carbon, nitrogen and phosphorus in vegetation, litter, young soil organic matter and old soil organic matter and the fluxes among these pools over time. This calibration of MEL, operating on a daily timestep, was created with published data collected at or near the Toolik Field Station (Toolik Lake, AK, USA) from moist acidic tussock tundra sites. We corroborate our calibration with data from plot manipulations (N and P fertilization, greenhouse, and shade house) performed as part of the NSF Arctic LTER project. The initial conditions for the recovery simulations reflect post-failure observations of some of the variation in soil organic matter, and soil and water nutrient chemistry. With sufficient nutrients from residual soil or supplied in soil water from upslope, the model indicates that vegetation can recover within several decades, but recovery of C and nutrients lost from soils may take hundreds of years.

  6. Hypersaline Microbial Mat Lipid Biomarkers

    NASA Technical Reports Server (NTRS)

    Jahnke, Linda L.; Embaye, Tsegereda; Turk, Kendra A.; Summons, Roger E.

    2002-01-01

    Lipid biomarkers and compound specific isotopic abundances are powerful tools for studies of contemporary microbial ecosystems. Knowledge of the relationship of biomarkers to microbial physiology and community structure creates important links for understanding the nature of early organisms and paleoenvironments. Our recent work has focused on the hypersaline microbial mats in evaporation ponds at Guerrero Negro, Baja California Sur, Mexico. Specific biomarkers for diatoms, cyanobacteria, archaea, green nonsulfur (GNS), sulfate reducing, sulfur oxidizing and methanotrophic bacteria have been identified. Analyses of the ester-bound fatty acids indicate a highly diverse microbial community, dominated by photosynthetic organisms at the surface. The delta C-13 of cyanobacterial biomarkers such as the monomethylalkanes and hopanoids are consistent with the delta C-13 measured for bulk mat (-10%o), while a GNS biomarker, wax esters (WXE), suggests a more depleted delta C-13 for GNS biomass (-16%o). This isotopic relationship is different than that observed in mats at Octopus Spring, Yellowstone National Park (YSNP) where GNS appear to grow photoheterotrophic ally. WXE abundance, while relatively low, is most pronounced in an anaerobic zone just below the cyanobacterial layer. The WXE isotope composition at GN suggests that these bacteria utilize photoautotrophy incorporating dissolved inorganic carbon (DIC) via the 3-hydroxypropionate pathway using H2S or H2.

  7. ProMat

    SciTech Connect

    2008-06-12

    ProMAT is a software tool for statistically analyzing data from enzyme-linked immunosorbent assay microarray experiments. The software estimates standard curves, sample protein concentrations and their uncertainties for multiple assays. ProMAT generates a set of comprehensive figures for assessing results and diagnosing process quality. The tool is available for Windows or Mac, and is distributed as open-source Java and R code

  8. Consumption of atmospheric methane by tundra soils

    NASA Technical Reports Server (NTRS)

    Whalen, S. C.; Reeburgh, W. S.

    1990-01-01

    The results of field and laboratory experiments on methane consumption by tundra soils are reported. For methane concentrations ranging from below to well above ambient, moist soils are found to consume methane rapidly; in nonwaterlogged soils, equilibration with atmospheric methane is fast relative to microbial oxidation. It is concluded that lowering of the water table in tundra as a resulting from a warmer, drier climate will decrease methane fluxes and could cause these areas to provide negative feedback for atmospheric methane.

  9. Biomass and production of tundra vegetation under three eddy covariance towers at Imnavait Creek, Alaska

    NASA Astrophysics Data System (ADS)

    Bret-Harte, M. S.; Euskirchen, E. S.; Edgar, C.; Huebner, D. C.; Okano, K.; Tucker, C. L.; Genet, H.; Ray, P. M.; Shaver, G. R.

    2013-12-01

    Understanding the magnitude of, and controls over, CO2 and water fluxes in arctic ecosystems is essential for accurate assessment and prediction of their responses to climate change. There have been relatively few year-round studies of net CO2, water, and energy exchange using micrometeorological methods in the Arctic. We established eddy covariance flux towers in three representative Alaska tundra ecosystems along a toposequence (a ridge site composed of heath tundra and moist non-acidic tundra, a mid-slope site composed of moist acidic tussock tundra, and a valley bottom fen site composed of wet sedge tundra and moist acidic tundra), and have collected CO2, water, and energy flux data continuously for six years. Our ridge site shows a cumulative loss of CO2 over these six years, while the fen site is closer to being in balance. We have also compared net CO2 fluxes measured in chambers and scaled to the footprint of the tower with those measured by the towers. There was good agreement between chamber level fluxes and tower fluxes for overall net ecosystem exchange (NEE), but less agreement for ecosystem respiration (ER) and gross ecosystem production (GEP). In order to improve our assessments of ER and GEP, in 2013 we harvested biomass and soils from the most common community types within the source area for each flux tower during the growing season. We measured above- and belowground biomass and net primary production of the vegetation, soil C and N stocks, and plant-available soil N. Plant biomass and production were greatest in the tussock tundra at the mid-slope tower, and least in the wet sedge community at the fen tower, while plant diversity was greatest in the communities at the ridge site. Soil carbon stocks were greatest at the fen tower, which had the least cumulative CO2 loss over the six years that we have been measuring. These data will be used to improve our calculations of gross ecosystem production and ecosystem respiration, and to parameterize a

  10. Mortality in tundra swans Cygnus columbianus

    USGS Publications Warehouse

    Bartonek, J.C.; Serie, J.R.; Converse, K.A.

    1991-01-01

    Our paper identifies and examines the significance of hunting and non-hunting mortality affecting the Eastern Population (EP) and Western Population (WP) (see Serie & Bartonek 1991a) of Tundra Swans. Sport hunting (Serie & Bartonek 1991b), native subsistence hunting (Copp 1989, Stewart & Bernier 1989), malicious shooting (McKelvey & MacNeill 1981), avian cholera (Friend et al. 1981, Schroeder 1983), ecto- and endoparasites (Trauger & Bartonek 1977, Woebeser 1981), lead poisoning (Sherwood 1960, Friend et al. 1981), collision (Willard 1978), and drowning (Miller et al. 1986) have been documented as being direct or indirect causes of mortality in fledged Tundra Swans; but their relative importance remains unknown.

  11. Research on dynamics of tundra ecosystems and their potential response to energy research development. Progress report, 1 April 1982-March 1983

    SciTech Connect

    Oechel, W.C.

    1983-02-15

    Bryophyte species distributions were analyzed with respect to microtopography at an alpine tundra site in central Alaska which is dominated by tussocks of Eriophorum vaginatum. Bryophyte distributions were found to be significantly correlated with slope but not with azimuth. Different types of tussocks and hollows and mats between tussocks also supported different bryophyte floras. Water loss resistances of three species of moss did not account for differences in their distributions.

  12. Methane flux time series for tundra environments

    SciTech Connect

    Whalen, S.C.; Reeburgh, W.E. )

    1988-12-01

    Seasonal measurements of net methane flux were made at permanent sites representing important components of arctic tundra. The sites include Eriophorum tussocks, intertussock depressions, moss-covered areas, and Carex stands. Methane fluxes showed high diel, seasonal, intra site, and between site variability. Eriophorum tussocks and Carex dominated methane release to the atmosphere, with mean annual net methane fluxes of 8.05 + or{minus}2.50 g CH{sub 4}/sq m and 4.88 + or{minus}0.73 g CH{sub 4}/sq m, respectively. Methane fluxes form the moss sites and intertussock depressions were much lower. Over 90% of the mean annual methane flux from the Eriophorum, intertussock depressions, and Carex sites occurred between thaw and freeze-up. Some 40% of the mean annual methane flux from the moss sites occurred during winter. Composite methane fluxes for tussock tundra and Carex-dominated wet meadow tundra environments were produced by weighting measured component fluxes according to areal coverage. Tussock and wet meadow tundra account for an estimated global methane emission of 19-33 Tg/yr. 39 refs., 7 figs., 2 tabs.

  13. Alaska Coastal Tundra Vegetation's Links to Climate

    NASA Astrophysics Data System (ADS)

    Bieniek, P. A.; Bhatt, U. S.; Walker, D. A.; Raynolds, M. K.; Comiso, J. C.; Epstein, H. E.; Pinzon, J. E.; Tucker, C. J.; Thoman, R. L.; Tran, H.; Molders, N.; Ermold, W.; Zhang, J.; Steele, M.

    2012-12-01

    Changes in the seasonal climate in arctic coastal regions of Alaska have been documented during the satellite record and are linked to tundra vegetation productivity. The Arctic Normalized Difference Vegetation Index (NDVI) data set (a measure of vegetation photosynthetic capacity) has been used to document coherent temporal relationships between near-coastal sea ice, summer tundra land surface temperatures, and vegetation productivity throughout the Arctic. In the tundra of northern Alaska, significant increases have been documented in seasonal maximum (max) NDVI along the Beaufort and Chukchi Sea coasts. In contrast, maxNDVI over coastal tundra areas in southwest Alaska along the Bering Sea has declined. Increasing land surface temperatures have been documented in the Chukchi, Beaufort and Bering Sea tundra regions during the summer, but temperatures have declined in midsummer. NDVI variability has been previously tied with sea ice. The purpose of this study is to identify the climate system components that are linked to Alaska coastal tundra NDVI changes on seasonal and sub-seasonal time scales. Three coastal tundra domains were evaluated based on the Treshnikov divisions and they are named the East Bering, East Chukchi, and Beaufort, in reference to the adjacent seas. In the Beaufort and East Chukchi regions, the strength of the Beaufort High was correlated with NDVI, however the sign of the relationship changes from month to month in summer indicating a complex relationship. The maxNDVI is above average when the June Beaufort High (BH) is stronger, however, a weaker BH in July is also linked with increased TI-NDVI (time-integrated over the season). This suggests that a stronger BH, which suppresses cloudiness and increases solar insolation, may drive warming in June. Trends in wind speeds suggest that the changes in temperature are also linked with changes in the local sea breeze circulation, and stronger winds along the coast are correlated with warmer

  14. Contexts for change in alpine tundra

    USGS Publications Warehouse

    Malanson, George P.; Rose, Jonathan P.; Schroeder, P. Jason; Fagre, Daniel B.

    2011-01-01

    Because alpine tundra is responding to climate change, a need exists to understand the meaning of observed changes. To provide context for such interpretation, the relevance of niche and neutral theories of biogeography and the continuum and classification approaches to biogeographic description are assessed. Two extensive studies of alpine tundra, from the Indian Peaks area, Colorado and Glacier National Park, Montana, are combined. The data are ordinated to describe relations. The pattern that emerges is one of a continuum of vegetation, but with the distinctions one might expect from distant sites. The relationships of the similarity of vegetation on all possible pairs of sites to the environmental differences and geographic distances are analyzed using Mantel correlations. Because distance and environmental differences in climate between the two sites are correlated, partial correlations are weak but still significant. More advanced analyses are suggested for this environment prior to interpretation of monitoring efforts such as GLORIA.

  15. MILLIMETER-SCALE GENETIC GRADIENTS AND COMMUNITY-LEVEL MOLECULAR CONVERGENCE IN A HYPERSALINE MICROBIAL MAT

    SciTech Connect

    Fenner, Marsha W; Kunin, Victor; Raes, Jeroen; Harris, J. Kirk; Spear, John R.; Walker, Jeffrey J.; Ivanova, Natalia; Mering, Christian von; Bebout, Brad M.; Pace, Norman R.; Bork, Peer; Hugenholtz, Philip

    2008-04-30

    To investigate the extent of genetic stratification in structured microbial communities, we compared the metagenomes of 10 successive layers of a phylogenetically complex hypersaline mat from Guerrero Negro, Mexico. We found pronounced millimeter-scale genetic gradients that are consistent with the physicochemical profile of the mat. Despite these gradients, all layers displayed near identical and acid-shifted isoelectric point profiles due to a molecular convergence of amino acid usage indicating that hypersalinity enforces an overriding selective pressure on the mat community.

  16. The unseen iceberg: Plant roots in arctic tundra

    USGS Publications Warehouse

    Iverson, Colleen M.; Sloan, Victoria L.; Sullivan, Patrick F.; Euskirchen, E.S.; McGuire, Anthony; Norby, Richard J.; Walker, Anthony P.; Warren, Jeffrey M.; Wullschleger, Stan D.

    2015-01-01

    Plant roots play a critical role in ecosystem function in arctic tundra, but root dynamics in these ecosystems are poorly understood. To address this knowledge gap, we synthesized available literature on tundra roots, including their distribution, dynamics and contribution to ecosystem carbon and nutrient fluxes, and highlighted key aspects of their representation in terrestrial biosphere models. Across all tundra ecosystems, belowground plant biomass exceeded aboveground biomass, with the exception of polar desert tundra. Roots were shallowly distributed in the thin layer of soil that thaws annually, and were often found in surface organic soil horizons. Root traits – including distribution, chemistry, anatomy and resource partitioning – play an important role in controlling plant species competition, and therefore ecosystem carbon and nutrient fluxes, under changing climatic conditions, but have only been quantified for a small fraction of tundra plants. Further, the annual production and mortality of fine roots are key components of ecosystem processes in tundra, but extant data are sparse. Tundra root traits and dynamics should be the focus of future research efforts. Better representation of the dynamics and characteristics of tundra roots will improve the utility of models for the evaluation of the responses of tundra ecosystems to changing environmental conditions.

  17. The unseen iceberg: plant roots in arctic tundra.

    PubMed

    Iversen, Colleen M; Sloan, Victoria L; Sullivan, Patrick F; Euskirchen, Eugenie S; McGuire, A David; Norby, Richard J; Walker, Anthony P; Warren, Jeffrey M; Wullschleger, Stan D

    2015-01-01

    Plant roots play a critical role in ecosystem function in arctic tundra, but root dynamics in these ecosystems are poorly understood. To address this knowledge gap, we synthesized available literature on tundra roots, including their distribution, dynamics and contribution to ecosystem carbon and nutrient fluxes, and highlighted key aspects of their representation in terrestrial biosphere models. Across all tundra ecosystems, belowground plant biomass exceeded aboveground biomass, with the exception of polar desert tundra. Roots were shallowly distributed in the thin layer of soil that thaws annually, and were often found in surface organic soil horizons. Root traits - including distribution, chemistry, anatomy and resource partitioning - play an important role in controlling plant species competition, and therefore ecosystem carbon and nutrient fluxes, under changing climatic conditions, but have only been quantified for a small fraction of tundra plants. Further, the annual production and mortality of fine roots are key components of ecosystem processes in tundra, but extant data are sparse. Tundra root traits and dynamics should be the focus of future research efforts. Better representation of the dynamics and characteristics of tundra roots will improve the utility of models for the evaluation of the responses of tundra ecosystems to changing environmental conditions.

  18. Plant community responses to experimental warming across the tundra biome.

    PubMed

    Walker, Marilyn D; Wahren, C Henrik; Hollister, Robert D; Henry, Greg H R; Ahlquist, Lorraine E; Alatalo, Juha M; Bret-Harte, M Syndonia; Calef, Monika P; Callaghan, Terry V; Carroll, Amy B; Epstein, Howard E; Jónsdóttir, Ingibjörg S; Klein, Julia A; Magnússon, Borgthór; Molau, Ulf; Oberbauer, Steven F; Rewa, Steven P; Robinson, Clare H; Shaver, Gaius R; Suding, Katharine N; Thompson, Catharine C; Tolvanen, Anne; Totland, Ørjan; Turner, P Lee; Tweedie, Craig E; Webber, Patrick J; Wookey, Philip A

    2006-01-31

    Recent observations of changes in some tundra ecosystems appear to be responses to a warming climate. Several experimental studies have shown that tundra plants and ecosystems can respond strongly to environmental change, including warming; however, most studies were limited to a single location and were of short duration and based on a variety of experimental designs. In addition, comparisons among studies are difficult because a variety of techniques have been used to achieve experimental warming and different measurements have been used to assess responses. We used metaanalysis on plant community measurements from standardized warming experiments at 11 locations across the tundra biome involved in the International Tundra Experiment. The passive warming treatment increased plant-level air temperature by 1-3 degrees C, which is in the range of predicted and observed warming for tundra regions. Responses were rapid and detected in whole plant communities after only two growing seasons. Overall, warming increased height and cover of deciduous shrubs and graminoids, decreased cover of mosses and lichens, and decreased species diversity and evenness. These results predict that warming will cause a decline in biodiversity across a wide variety of tundra, at least in the short term. They also provide rigorous experimental evidence that recently observed increases in shrub cover in many tundra regions are in response to climate warming. These changes have important implications for processes and interactions within tundra ecosystems and between tundra and the atmosphere.

  19. Geochemical drivers of organic matter decomposition in Arctic tundra soils

    SciTech Connect

    Herndon, Elizabeth M.; Yang, Ziming; Graham, David E.; Wullschleger, Stan D.; Gu, Baohua; Liang, Liyuan; Bargar, John; Janot, Noemie; Regier, Tom Z.

    2015-12-07

    Climate change is warming tundra ecosystems in the Arctic, resulting in the decomposition of previously-frozen soil organic matter (SOM) and release of carbon (C) to the atmosphere; however, the processes that control SOM decomposition and C emissions remain highly uncertain. In this study, we evaluate geochemical factors that influence anaerobic production of carbon dioxide (CO2) and methane (CH4) in the active layers of four ice-wedge polygons. Surface and soil pore waters were collected during the annual thaw season over a two-year period in an area containing waterlogged, low-centered polygons and well-drained, high-centered polygons. We report spatial and seasonal patterns of dissolved gases in relation to the geochemical properties of Fe and organic C as determined using spectroscopic and chromatographic techniques. Iron was present as Fe(II) in soil solution near the permafrost boundary but enriched as Fe(III) in the middle of the active layer, similar to dissolved aromatic-C and organic acids. Dissolved CH4 increased relative to dissolved CO2 with depth and varied with soil moisture in the middle of the active layer in patterns that were positively correlated with the proportion of dissolved Fe(III) in transitional and low-centered polygon soils but negatively correlated in the drier flat- and high-centered polygons. These results suggest that microbial-mediated Fe oxidation and reduction influence respiration/fermentation of SOM and production of substrates (e.g., low-molecular-weight organic acids) for methanogenesis. As a result, we infer that geochemical differences induced by water saturation dictate microbial products of SOM decomposition, and Fe geochemistry is an important factor regulating methanogenesis in anoxic tundra soils.

  20. Geochemical drivers of organic matter decomposition in Arctic tundra soils

    DOE PAGES

    Herndon, Elizabeth M.; Yang, Ziming; Graham, David E.; Wullschleger, Stan D.; Gu, Baohua; Liang, Liyuan; Bargar, John; Janot, Noemie; Regier, Tom Z.

    2015-12-07

    Climate change is warming tundra ecosystems in the Arctic, resulting in the decomposition of previously-frozen soil organic matter (SOM) and release of carbon (C) to the atmosphere; however, the processes that control SOM decomposition and C emissions remain highly uncertain. In this study, we evaluate geochemical factors that influence anaerobic production of carbon dioxide (CO2) and methane (CH4) in the active layers of four ice-wedge polygons. Surface and soil pore waters were collected during the annual thaw season over a two-year period in an area containing waterlogged, low-centered polygons and well-drained, high-centered polygons. We report spatial and seasonal patterns ofmore » dissolved gases in relation to the geochemical properties of Fe and organic C as determined using spectroscopic and chromatographic techniques. Iron was present as Fe(II) in soil solution near the permafrost boundary but enriched as Fe(III) in the middle of the active layer, similar to dissolved aromatic-C and organic acids. Dissolved CH4 increased relative to dissolved CO2 with depth and varied with soil moisture in the middle of the active layer in patterns that were positively correlated with the proportion of dissolved Fe(III) in transitional and low-centered polygon soils but negatively correlated in the drier flat- and high-centered polygons. These results suggest that microbial-mediated Fe oxidation and reduction influence respiration/fermentation of SOM and production of substrates (e.g., low-molecular-weight organic acids) for methanogenesis. As a result, we infer that geochemical differences induced by water saturation dictate microbial products of SOM decomposition, and Fe geochemistry is an important factor regulating methanogenesis in anoxic tundra soils.« less

  1. Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska

    DOE PAGES

    Herndon, Elizabeth M.; Mann, Benjamin F.; Chowdhury, Taniya Roy; Wullschleger, Stan D.; Graham, David E.; Liang, Liyuan; Gu, Baohua; Yang, Ziming

    2015-11-23

    Arctic tundra soils store a large quantity of organic carbon that is susceptible to decomposition and release to the atmosphere as methane (CH4) and carbon dioxide (CO2) under a warming climate. Anaerobic processes that generate CH4 and CO2 remain unclear because previous studies have focused on aerobic decomposition pathways. To predict releases of CO2 and CH4 from tundra soils, it is necessary to identify pathways of soil organic matter decomposition under the anoxic conditions that are prevalent in Arctic ecosystems. Here molecular and spectroscopic techniques were used to monitor biological degradation of water-extractable organic carbon (WEOC) during anoxic incubation ofmore » tundra soils from a region of continuous permafrost in northern Alaska. Organic and mineral soils from the tundra active layer were incubated at –2, +4, or +8°C for up to 60 days to mimic the short-term thaw season. Results suggest that, under anoxic conditions, fermentation converted complex organic molecules into simple organic acids that were used in concomitant Fe-reduction and acetoclastic methanogenesis reactions. Nonaromatic compounds increased over time as WEOC increased. Organic acid metabolites initially accumulated in soils but were mostly depleted by day 60 because organic acids were consumed to produce Fe(II), CO2, and CH4. We conclude that fermentation of nonprotected organic matter facilitates methanogenesis and Fe reduction reactions, and that the proportion of organic acids consumed by methanogenesis increases relative to Fe reduction with increasing temperature. As a result, the decomposition pathways observed in this study are important to consider in numerical modeling of greenhouse gas production in the Arctic.« less

  2. Pathways of anaerobic organic matter decomposition in tundra soils from Barrow, Alaska

    SciTech Connect

    Herndon, Elizabeth M.; Mann, Benjamin F.; Chowdhury, Taniya Roy; Wullschleger, Stan D.; Graham, David E.; Liang, Liyuan; Gu, Baohua; Yang, Ziming

    2015-11-23

    Arctic tundra soils store a large quantity of organic carbon that is susceptible to decomposition and release to the atmosphere as methane (CH4) and carbon dioxide (CO2) under a warming climate. Anaerobic processes that generate CH4 and CO2 remain unclear because previous studies have focused on aerobic decomposition pathways. To predict releases of CO2 and CH4 from tundra soils, it is necessary to identify pathways of soil organic matter decomposition under the anoxic conditions that are prevalent in Arctic ecosystems. Here molecular and spectroscopic techniques were used to monitor biological degradation of water-extractable organic carbon (WEOC) during anoxic incubation of tundra soils from a region of continuous permafrost in northern Alaska. Organic and mineral soils from the tundra active layer were incubated at –2, +4, or +8°C for up to 60 days to mimic the short-term thaw season. Results suggest that, under anoxic conditions, fermentation converted complex organic molecules into simple organic acids that were used in concomitant Fe-reduction and acetoclastic methanogenesis reactions. Nonaromatic compounds increased over time as WEOC increased. Organic acid metabolites initially accumulated in soils but were mostly depleted by day 60 because organic acids were consumed to produce Fe(II), CO2, and CH4. We conclude that fermentation of nonprotected organic matter facilitates methanogenesis and Fe reduction reactions, and that the proportion of organic acids consumed by methanogenesis increases relative to Fe reduction with increasing temperature. As a result, the decomposition pathways observed in this study are important to consider in numerical modeling of greenhouse gas production in the Arctic.

  3. Compositions of constructed microbial mats

    DOEpatents

    Bender, Judith A.; Phillips, Peter C.

    1999-01-01

    Compositions and methods of use of constructed microbial mats, comprising cyanobacteria and purple autotrophic bacteria and an organic nutrient source, in a laminated structure, are described. The constructed microbial mat is used for bioremediation of different individual contaminants and for mixed or multiple contaminants, and for production of beneficial compositions and molecules.

  4. M.A.T. Programs.

    ERIC Educational Resources Information Center

    Wildman, Louis

    A proposal is presented for developing a Master of Arts in Teaching (MAT) program at California State University, Bakersfield. The criteria for a MAT program are examined by outlining existing programs at: (1) Harvard Graduate School; (2) University of California, Berkeley; (3) Portland State University; (4) Stanford University; (5) University of…

  5. Hospital use of decontaminating mats.

    PubMed

    Marchetti, M G; Finzi, G; Cugini, P; Manfrini, M; Salvatorelli, G

    2003-09-01

    Decontaminating mats made of several layers of adhesive sheets (water-based acrylic 6 g/m2) supplemented with a bactericidal agent (3-1 benzoisothiazolin) at a concentration of 25% were placed in the passages providing access to the operating rooms of an orthopaedic service. Contact plates containing tryptone soy agar were used to assess bacterial concentration at specific points in front of and beyond the mats. For trolley passageways two areas were defined: central and lateral paths, corresponding to the areas walked upon by the personnel pushing the trolleys and to the paths covered by the trolley wheels, respectively. In order to exclude a simple mechanical effect, a comparison of bacterial loads at defined sites beyond the mats was carried out in the presence and in the absence of decontaminating mats. Bacterial colony counts in the presence of decontaminating mats were substantially and statistically significantly reduced compared with the absence of mats. The lower mean number of colony-forming units detected at points located beyond the mats parallels this finding; this difference is also statistically significant. We thus conclude that decontaminating mats are potentially useful in decreasing micro-organism carry-over due to personnel or the passage of trolleys into areas at high risk of infection such as operating rooms.

  6. MueMat Multicrid Toolbox

    2010-11-23

    MueMat is intended for the research and development of multigrid algorithms used in the solution of sparse linear systems arising from systems of partial differential equations. The software can generate example linear systems and provides short programs to demonstrate the various interfaces for creating, accessing, and applying the solvers. MueMat currently includes two types of algebraic multigrid methods and many commonly used smoothers. However, the software is intended to be extensible, and new methods canmore » be incorporated easily. MueMat also allows for advanced usage, such as combining multiple methods and segregated solves. The library supports point and block access to matrix data. MueMat has been designed for use within the programming environment of the Mathworks program MATLAB®. All algorithms and methods in MueMat have been or will be published in the open scientific literature.« less

  7. MueMat Multicrid Toolbox

    SciTech Connect

    2010-11-23

    MueMat is intended for the research and development of multigrid algorithms used in the solution of sparse linear systems arising from systems of partial differential equations. The software can generate example linear systems and provides short programs to demonstrate the various interfaces for creating, accessing, and applying the solvers. MueMat currently includes two types of algebraic multigrid methods and many commonly used smoothers. However, the software is intended to be extensible, and new methods can be incorporated easily. MueMat also allows for advanced usage, such as combining multiple methods and segregated solves. The library supports point and block access to matrix data. MueMat has been designed for use within the programming environment of the Mathworks program MATLAB®. All algorithms and methods in MueMat have been or will be published in the open scientific literature.

  8. THE ROLE OF THERMAL REGIMEN IN TUNDRA PLANT COMMUNITY RESTORATION

    EPA Science Inventory

    Mineral extraction activities in the Arctic regions of the world produce long-lasting ecological disturbances. Assisted recovery from such disturbances may require restoration of the tundra thermal regime. We transplanted plugs of entire root zone and live tundra plants to a dist...

  9. Experimentally substantiated equations of the interrelations between the agrochemical characteristics of tundra soils

    NASA Astrophysics Data System (ADS)

    Vasil'Evskaya, V. D.; Grigor'ev, V. Ya.; Pogozhev, E. Yu.; Pogozheva, E. A.

    2011-01-01

    The detailed analysis of the results obtained in the course of experimental studying of the tundra soils in Western and Central Siberia and in the European part of Russia has revealed the general regularities of the variability and the relationships between the agrochemical and other properties of the soils. On the basis of these data, the calculated methods for the assessment of a complex of agrochemical properties of natural and disturbed tundra soils under different moisture and thermal conditions were elaborated. Among the properties analyzed, the following are important for plant growth: the acidity and the content of humus, organic carbon, total nitrogen, mobile phosphorus, nitrogen, and potassium. The relationships between the soil agro-chemical properties and the plant productivity allowed applying them for the quantitative evaluation of the environmental threat of the soil-plant cover's degradation because of different predominantly mechanical disturbances.

  10. Intense, natural pollution affects Arctic tundra vegetation at the Smoking Hills, Canada

    SciTech Connect

    Freedman, B. ); Zobens, V.; Hutchinson, T.C.; Gizyn, W.I. )

    1990-04-01

    Long-term, natural emissions of sulfur dioxide and acidic aerosols have had an impact on remote tundra at the Smoking Hills. The emissions have caused plant damage by SO{sub 2} toxicity, and have severely acidified soil and freshwater. At the most intensively fumigated locations closest to the sources of emission, pollution stresses have devegetated the terrestrial ecosystem. The first plants that are encountered along a spatial gradient of decreasing pollution stress are Artemisia tilesii and Arctagrostis latifolia, which dominate a characteristic, pollution-tolerant community. Farther away at moderately polluted sites there are mixed communities with floristic elements of both fumigated and reference, unfumigated tundra. This pattern of ecosystem response to a concatenation of stresses caused by natural air and soil pollution is qualitatively similar to the damage that occurs in the vicinity of anthropogenic point sources of air pollution, such as smelters.

  11. Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils.

    PubMed

    Koyama, Akihiro; Wallenstein, Matthew D; Simpson, Rodney T; Moore, John C

    2014-01-01

    The pool of soil organic carbon (SOC) in the Arctic is disproportionally large compared to those in other biomes. This large quantity of SOC accumulated over millennia due to slow rates of decomposition relative to net primary productivity. Decomposition is constrained by low temperatures and nutrient concentrations, which limit soil microbial activity. We investigated how nutrients limit bacterial and fungal biomass and community composition in organic and mineral soils within moist acidic tussock tundra ecosystems. We sampled two experimental arrays of moist acidic tussock tundra that included fertilized and non-fertilized control plots. One array included plots that had been fertilized annually since 1989 and the other since 2006. Fertilization significantly altered overall bacterial community composition and reduced evenness, to a greater degree in organic than mineral soils, and in the 1989 compared to the 2006 site. The relative abundance of copiotrophic α-Proteobacteria and β-Proteobacteria was higher in fertilized than control soils, and oligotrophic Acidobacteria were less abundant in fertilized than control soils at the 1989 site. Fungal community composition was less sensitive to increased nutrient availability, and fungal responses to fertilization were not consistent between soil horizons and sites. We detected two ectomycorrhizal genera, Russula and Cortinarius spp., associated with shrubs. Their relative abundance was not affected by fertilization despite increased dominance of their host plants in the fertilized plots. Our results indicate that fertilization, which has been commonly used to simulate warming in Arctic tundra, has limited applicability for investigating fungal dynamics under warming.

  12. Tundra Soil-Water Content and Temperature Behavior and Implications for Winter Tundra Travel

    NASA Astrophysics Data System (ADS)

    Lilly, M. R.; Paetzold, R.; Kane, D. L.

    2007-12-01

    Unfrozen soil-water content was monitored in the upper meter of tundra soils, using TDR sensors at several locations on the North Slope of Alaska and in the Brooks Range foothills. In addition, soil temperature was monitored to a depth of 1.5 m at these locations using thermistors. Particular attention was paid to soil water and temperature behavior during freezing and thawing conditions. The upper organic layer of soil often exhibited very wet conditions and showed much greater temporal variability than the lower mineral soil layers. Permafrost acts as a barrier to water flow, so the soils usually are wet as they thaw in the spring. Boundaries between soil layers usually are very irregular and the soil materials are mixed due to churning from frost heaving. Soil-water content sensors integrate soil-water content over a relatively large volume compared to the essentially point measurements of the thermistors used to measure soil temperature. Anyone who has worked in the field knows how difficult it is to place sensors at an exact depth. Soil-surface roughness and vegetation under tundra conditions make accurate placement almost impossible. Minor discrepancies between soil-water freezing and thawing behavior should be expected. However, an overall picture of the annual soil-freezing processes still can be described by these matched sets of sensor observations. In addition to this data, general meteorological and snow depth data is collected. Results of this study may be useful in improving tundra travel guidelines. Currently, tundra travel is allowed if the soil temperature in the upper 30 cm of soil is colder than -5C. Soil water content and resulting ice bonding in the soil matrix does impact soil properties and the resulting impacts of tundra travel.

  13. Molecular cloning and expression analysis of MAT1 gene in black tiger shrimp (Penaeus monodon).

    PubMed

    Wang, Y; Fu, M J; Zhao, C; Bao, W Y; Zhou, F L; Yang, Q B; Jiang, S G; Qiu, L H

    2016-01-01

    MAT1 (ménage à trois 1), an assembly factor and targeting subunit of the CDK-dependent kinase (CAK), can regulate the cell cycle, transcription, and DNA repair. This study was intended to investigate the role of MAT1 in the reproductive maturation of black tiger shrimp (Penaeus monodon). In this study, the P. monodon MAT1 (PmMAT1) gene was identified and characterized. The full-length cDNA of PmMAT1 was 1490 bp in length with an open-reading frame of 993 bp corresponding to 330 amino acids. The temporal expression of PmMAT1 in various tissues was measured by quantitative real-time PCR with the highest expression observed in ovaries. In the ovaries, the PmMAT1 gene was continuously but differentially expressed during the maturation stages. Comparative analyses of MAT1, CDK7, and cyclin H in the CAK complex of P. monodon indicated that the expression of CDK7 and cyclin H coincided with that of MAT1 during the ovary maturation stages. Serotonin (5-HT) injection promoted the expression level of PmMAT1 in the ovaries of shrimp at 6-48 h post-injection. These results indicate that PmMat1 plays a prominent role in the process of ovarian maturation. PMID:26909956

  14. Electrospun chitosan-based nanofiber mats loaded with Garcinia mangostana extracts.

    PubMed

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Sukma, Monrudee; Opanasopit, Praneet

    2013-08-16

    The aim of this study was to prepare electrospun chitosan-based nanofiber mats and to incorporate the fruit hull of Garcinia mangostana (GM) extracts into the mats. Chitosan-ethylenediaminetetraacetic acid/polyvinyl alcohol (CS-EDTA/PVA) was selected as the polymers. The GM extracts with 1, 2 and 3 wt% α-mangostin were incorporated into the CS-EDTA/PVA solution and electrospun to obtain nanofibers. The morphology and diameters of the mats were analyzed using scanning electron microscopy (SEM). The mechanical and swelling properties were investigated. The amount of GM extracts was determined using high-performance liquid chromatography (HPLC). The antioxidative activity, antibacterial activity, extract release and stability of the mats were evaluated. In vivo wound healing tests were also performed in Wistar rats. The results indicated that the diameters of the fibers were on the nanoscale and that no crystals of the extract were observed in the mats at any concentration. The mats provided suitable tensile strength and swelling properties. All of the mats exhibited antioxidant and antibacterial activity. During the wound healing test, the mats accelerated the rate of healing when compared to the control (gauze-covered). The mats maintained 90% of their content of α-mangostin for 3 months. In conclusion, the chitosan-based nanofiber mats loaded with GM extracts were successfully prepared using the electrospinning method. These nanofiber mats loaded with GM extracts may provide a good alternative for accelerating wound healing.

  15. Electrospun chitosan-based nanofiber mats loaded with Garcinia mangostana extracts.

    PubMed

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Sukma, Monrudee; Opanasopit, Praneet

    2013-08-16

    The aim of this study was to prepare electrospun chitosan-based nanofiber mats and to incorporate the fruit hull of Garcinia mangostana (GM) extracts into the mats. Chitosan-ethylenediaminetetraacetic acid/polyvinyl alcohol (CS-EDTA/PVA) was selected as the polymers. The GM extracts with 1, 2 and 3 wt% α-mangostin were incorporated into the CS-EDTA/PVA solution and electrospun to obtain nanofibers. The morphology and diameters of the mats were analyzed using scanning electron microscopy (SEM). The mechanical and swelling properties were investigated. The amount of GM extracts was determined using high-performance liquid chromatography (HPLC). The antioxidative activity, antibacterial activity, extract release and stability of the mats were evaluated. In vivo wound healing tests were also performed in Wistar rats. The results indicated that the diameters of the fibers were on the nanoscale and that no crystals of the extract were observed in the mats at any concentration. The mats provided suitable tensile strength and swelling properties. All of the mats exhibited antioxidant and antibacterial activity. During the wound healing test, the mats accelerated the rate of healing when compared to the control (gauze-covered). The mats maintained 90% of their content of α-mangostin for 3 months. In conclusion, the chitosan-based nanofiber mats loaded with GM extracts were successfully prepared using the electrospinning method. These nanofiber mats loaded with GM extracts may provide a good alternative for accelerating wound healing. PMID:23680732

  16. Molecular cloning and expression analysis of MAT1 gene in black tiger shrimp (Penaeus monodon).

    PubMed

    Wang, Y; Fu, M J; Zhao, C; Bao, W Y; Zhou, F L; Yang, Q B; Jiang, S G; Qiu, L H

    2016-01-01

    MAT1 (ménage à trois 1), an assembly factor and targeting subunit of the CDK-dependent kinase (CAK), can regulate the cell cycle, transcription, and DNA repair. This study was intended to investigate the role of MAT1 in the reproductive maturation of black tiger shrimp (Penaeus monodon). In this study, the P. monodon MAT1 (PmMAT1) gene was identified and characterized. The full-length cDNA of PmMAT1 was 1490 bp in length with an open-reading frame of 993 bp corresponding to 330 amino acids. The temporal expression of PmMAT1 in various tissues was measured by quantitative real-time PCR with the highest expression observed in ovaries. In the ovaries, the PmMAT1 gene was continuously but differentially expressed during the maturation stages. Comparative analyses of MAT1, CDK7, and cyclin H in the CAK complex of P. monodon indicated that the expression of CDK7 and cyclin H coincided with that of MAT1 during the ovary maturation stages. Serotonin (5-HT) injection promoted the expression level of PmMAT1 in the ovaries of shrimp at 6-48 h post-injection. These results indicate that PmMat1 plays a prominent role in the process of ovarian maturation.

  17. Nitrogen mineralization in a tussock tundra soil

    SciTech Connect

    Marion, G.M.; Miller, P.C.

    1982-01-01

    The effects of substrate quality, temperature, and moisture on nitrogen mineralization from a tussock tundra soil were examined with laboratory soil incubations utilizing both air-dried samples and field-moist intact cores. The potentially mineralizable nitrogen (PMN) was highly correlated to both total soil nitrogen (positively) and the carbon/nitrogen ratio (negatively). All soil horizons exhibited a net nitrogen mineralization even at a high carbon/nitrogen ratio of 92. It was concluded that field-moist intact soil cores provide a more reliable estimate than the air-dried samples of both PMN and the mineralization rate under standard laboratory conditions. There was no significant effect of moisture tension (0.0 to 0.4 bars) on net nitrogen mineralization. The average Q/sub 10/ (temperature effect) for net nitrogen mineralization was 2.5. Based on this study and others, it was concluded that temperature through its effect on nitrogen mineralization plays an important role in controlling plant productivity in these naturally nitrogen-deficient tundra ecosystems.

  18. A field operational test on valve-regulated lead-acid absorbent-glass-mat batteries in micro-hybrid electric vehicles. Part I. Results based on kernel density estimation

    NASA Astrophysics Data System (ADS)

    Schaeck, S.; Karspeck, T.; Ott, C.; Weckler, M.; Stoermer, A. O.

    2011-03-01

    In March 2007 the BMW Group has launched the micro-hybrid functions brake energy regeneration (BER) and automatic start and stop function (ASSF). Valve-regulated lead-acid (VRLA) batteries in absorbent glass mat (AGM) technology are applied in vehicles with micro-hybrid power system (MHPS). In both part I and part II of this publication vehicles with MHPS and AGM batteries are subject to a field operational test (FOT). Test vehicles with conventional power system (CPS) and flooded batteries were used as a reference. In the FOT sample batteries were mounted several times and electrically tested in the laboratory intermediately. Vehicle- and battery-related diagnosis data were read out for each test run and were matched with laboratory data in a data base. The FOT data were analyzed by the use of two-dimensional, nonparametric kernel estimation for clear data presentation. The data show that capacity loss in the MHPS is comparable to the CPS. However, the influence of mileage performance, which cannot be separated, suggests that battery stress is enhanced in the MHPS although a battery refresh function is applied. Anyway, the FOT demonstrates the unsuitability of flooded batteries for the MHPS because of high early capacity loss due to acid stratification and because of vanishing cranking performance due to increasing internal resistance. Furthermore, the lack of dynamic charge acceptance for high energy regeneration efficiency is illustrated. Under the presented FOT conditions charge acceptance of lead-acid (LA) batteries decreases to less than one third for about half of the sample batteries compared to new battery condition. In part II of this publication FOT data are presented by multiple regression analysis (Schaeck et al., submitted for publication [1]).

  19. Recent Arctic tundra fire initiates widespread thermokarst development

    USGS Publications Warehouse

    Jones, Benjamin M.; Grosse, Guido; Arp, Christopher D.; Miller, Eric K.; Liu, Lingli; Hayes, Daniel J.; Larsen, Christopher F.

    2015-01-01

    Fire-induced permafrost degradation is well documented in boreal forests, but the role of fires in initiating thermokarst development in Arctic tundra is less well understood. Here we show that Arctic tundra fires may induce widespread thaw subsidence of permafrost terrain in the first seven years following the disturbance. Quantitative analysis of airborne LiDAR data acquired two and seven years post-fire, detected permafrost thaw subsidence across 34% of the burned tundra area studied, compared to less than 1% in similar undisturbed, ice-rich tundra terrain units. The variability in thermokarst development appears to be influenced by the interaction of tundra fire burn severity and near-surface, ground-ice content. Subsidence was greatest in severely burned, ice-rich upland terrain (yedoma), accounting for ~50% of the detected subsidence, despite representing only 30% of the fire disturbed study area. Microtopography increased by 340% in this terrain unit as a result of ice wedge degradation. Increases in the frequency, magnitude, and severity of tundra fires will contribute to future thermokarst development and associated landscape change in Arctic tundra regions.

  20. Recent Arctic tundra fire initiates widespread thermokarst development

    PubMed Central

    Jones, Benjamin M.; Grosse, Guido; Arp, Christopher D.; Miller, Eric; Liu, Lin; Hayes, Daniel J.; Larsen, Christopher F.

    2015-01-01

    Fire-induced permafrost degradation is well documented in boreal forests, but the role of fires in initiating thermokarst development in Arctic tundra is less well understood. Here we show that Arctic tundra fires may induce widespread thaw subsidence of permafrost terrain in the first seven years following the disturbance. Quantitative analysis of airborne LiDAR data acquired two and seven years post-fire, detected permafrost thaw subsidence across 34% of the burned tundra area studied, compared to less than 1% in similar undisturbed, ice-rich tundra terrain units. The variability in thermokarst development appears to be influenced by the interaction of tundra fire burn severity and near-surface, ground-ice content. Subsidence was greatest in severely burned, ice-rich upland terrain (yedoma), accounting for ~50% of the detected subsidence, despite representing only 30% of the fire disturbed study area. Microtopography increased by 340% in this terrain unit as a result of ice wedge degradation. Increases in the frequency, magnitude, and severity of tundra fires will contribute to future thermokarst development and associated landscape change in Arctic tundra regions. PMID:26511650

  1. Recent Arctic tundra fire initiates widespread thermokarst development.

    PubMed

    Jones, Benjamin M; Grosse, Guido; Arp, Christopher D; Miller, Eric; Liu, Lin; Hayes, Daniel J; Larsen, Christopher F

    2015-10-29

    Fire-induced permafrost degradation is well documented in boreal forests, but the role of fires in initiating thermokarst development in Arctic tundra is less well understood. Here we show that Arctic tundra fires may induce widespread thaw subsidence of permafrost terrain in the first seven years following the disturbance. Quantitative analysis of airborne LiDAR data acquired two and seven years post-fire, detected permafrost thaw subsidence across 34% of the burned tundra area studied, compared to less than 1% in similar undisturbed, ice-rich tundra terrain units. The variability in thermokarst development appears to be influenced by the interaction of tundra fire burn severity and near-surface, ground-ice content. Subsidence was greatest in severely burned, ice-rich upland terrain (yedoma), accounting for ~50% of the detected subsidence, despite representing only 30% of the fire disturbed study area. Microtopography increased by 340% in this terrain unit as a result of ice wedge degradation. Increases in the frequency, magnitude, and severity of tundra fires will contribute to future thermokarst development and associated landscape change in Arctic tundra regions.

  2. Evidence and Implications of Frequent Fires in Ancient Shrub Tundra

    SciTech Connect

    Higuera, P E; Brubaker, L B; Anderson, P M; Brown, T A; Kennedy, A T; Hu, F S

    2008-03-06

    Understanding feedbacks between terrestrial and atmospheric systems is vital for predicting the consequences of global change, particularly in the rapidly changing Arctic. Fire is a key process in this context, but the consequences of altered fire regimes in tundra ecosystems are rarely considered, largely because tundra fires occur infrequently on the modern landscape. We present paleoecological data that indicate frequent tundra fires in northcentral Alaska between 14,000 and 10,000 years ago. Charcoal and pollen from lake sediments reveal that ancient birchdominated shrub tundra burned as often as modern boreal forests in the region, every 144 years on average (+/- 90 s.d.; n = 44). Although paleoclimate interpretations and data from modern tundra fires suggest that increased burning was aided by low effective moisture, vegetation cover clearly played a critical role in facilitating the paleo-fires by creating an abundance of fine fuels. These records suggest that greater fire activity will likely accompany temperature-related increases in shrub-dominated tundra predicted for the 21st century and beyond. Increased tundra burning will have broad impacts on physical and biological systems as well as land-atmosphere interactions in the Arctic, including the potential to release stored organic carbon to the atmosphere.

  3. Capillography of Mats of Nanofibers

    NASA Technical Reports Server (NTRS)

    Noca, Flavio; Sansom, Elijah; Zhou, Jijie; Gharib, Mory

    2008-01-01

    Capillography (from the Latin capillus, 'hair', and the Greek graphein, to write ) is a recently conceived technique for forming mats of nanofibers into useful patterns. The concept was inspired by experiments on carpetlike mats of multiwalled carbon nanotubes. Capillography may have the potential to be a less-expensive, less-time-consuming alternative to electron-beam lithography as a means of nanoscale patterning for the fabrication of small devices and instruments. In capillography, one exploits the lateral capillary forces exerted on small objects that pierce the surface of a liquid. If the small objects are identical, then the forces are always attractive. Two examples of the effects of such forces are the agglomeration of small particles floating on the surface of a pond and the drawing together of hairs of a wet paintbrush upon removal of the brush from water. Because nanoscale objects brought into contact remain stuck together indefinitely due to Van der Waals forces, patterns formed by capillography remain even upon removal of the liquid. For the experiments on the mats of carbon nanotubes, a surfactant solution capable of wetting carbon nanotubes (which are ultra-hydrophobic) was prepared. The mats were wetted with the solution, then dried. Once the mats were dry, it was found that the nanotubes had become ordered into various patterns, including nestlike indentations, trenches, and various combinations thereof. It may be possible to exploit such ordering effects through controlled wetting and drying of designated portions of mats of carbon nanotubes (and, perhaps, mats of nanofibers of other materials) to obtain patterns similar to those heretofore formed by use of electron-beam lithography. For making patterns that include nestlike indentations, it has been conjectured that it could be possible to control the nesting processes by use of electrostatic fields. Further research is needed to understand the physics of the patterning processes in order to

  4. Where do the treeless tundra areas of northern highlands fit in the global biome system: toward an ecologically natural subdivision of the tundra biome.

    PubMed

    Virtanen, Risto; Oksanen, Lauri; Oksanen, Tarja; Cohen, Juval; Forbes, Bruce C; Johansen, Bernt; Käyhkö, Jukka; Olofsson, Johan; Pulliainen, Jouni; Tømmervik, Hans

    2016-01-01

    According to some treatises, arctic and alpine sub-biomes are ecologically similar, whereas others find them highly dissimilar. Most peculiarly, large areas of northern tundra highlands fall outside of the two recent subdivisions of the tundra biome. We seek an ecologically natural resolution to this long-standing and far-reaching problem. We studied broad-scale patterns in climate and vegetation along the gradient from Siberian tundra via northernmost Fennoscandia to the alpine habitats of European middle-latitude mountains, as well as explored those patterns within Fennoscandian tundra based on climate-vegetation patterns obtained from a fine-scale vegetation map. Our analyses reveal that ecologically meaningful January-February snow and thermal conditions differ between different types of tundra. High precipitation and mild winter temperatures prevail on middle-latitude mountains, low precipitation and usually cold winters prevail on high-latitude tundra, and Scandinavian mountains show intermediate conditions. Similarly, heath-like plant communities differ clearly between middle latitude mountains (alpine) and high-latitude tundra vegetation, including its altitudinal extension on Scandinavian mountains. Conversely, high abundance of snowbeds and large differences in the composition of dwarf shrub heaths distinguish the Scandinavian mountain tundra from its counterparts in Russia and the north Fennoscandian inland. The European tundra areas fall into three ecologically rather homogeneous categories: the arctic tundra, the oroarctic tundra of northern heights and mountains, and the genuinely alpine tundra of middle-latitude mountains. Attempts to divide the tundra into two sub-biomes have resulted in major discrepancies and confusions, as the oroarctic areas are included in the arctic tundra in some biogeographic maps and in the alpine tundra in others. Our analyses based on climate and vegetation criteria thus seem to resolve the long-standing biome

  5. Molecular ecology of microbial mats.

    PubMed

    Bolhuis, Henk; Cretoiu, Mariana Silvia; Stal, Lucas J

    2014-11-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep and fluctuating physicochemical microgradients, that are the result of the ever changing environmental conditions and of the microorganisms' own activities, give rise to a plethora of potential niches resulting in the formation of one of the most diverse microbial ecosystems known to date. For several decades, microbial mats have been studied extensively and more recently molecular biological techniques have been introduced that allowed assessing and investigating the diversity and functioning of these systems. These investigations also involved metagenomics analyses using high-throughput DNA and RNA sequencing. Here, we summarize some of the latest developments in metagenomic analysis of three representative phototrophic microbial mat types (coastal, hot spring, and hypersaline). We also present a comparison of the available metagenomic data sets from mats emphasizing the major differences between them as well as elucidating the overlap in overall community composition. PMID:25109247

  6. Molecular ecology of microbial mats.

    PubMed

    Bolhuis, Henk; Cretoiu, Mariana Silvia; Stal, Lucas J

    2014-11-01

    Phototrophic microbial mats are ideal model systems for ecological and evolutionary analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly closed, and self-sustaining benthic ecosystems that comprise the major element cycles, trophic levels, and food webs. The steep and fluctuating physicochemical microgradients, that are the result of the ever changing environmental conditions and of the microorganisms' own activities, give rise to a plethora of potential niches resulting in the formation of one of the most diverse microbial ecosystems known to date. For several decades, microbial mats have been studied extensively and more recently molecular biological techniques have been introduced that allowed assessing and investigating the diversity and functioning of these systems. These investigations also involved metagenomics analyses using high-throughput DNA and RNA sequencing. Here, we summarize some of the latest developments in metagenomic analysis of three representative phototrophic microbial mat types (coastal, hot spring, and hypersaline). We also present a comparison of the available metagenomic data sets from mats emphasizing the major differences between them as well as elucidating the overlap in overall community composition.

  7. Spatial energy budgets in alpine tundra

    NASA Astrophysics Data System (ADS)

    Greenland, D.

    1993-12-01

    Modelling and Geographic Information System (GIS) technology are employed in order to extend spatially, estimated and observed growing season values of the components of the surface heat energy budget for an area of alpine tundra in the Colorado Front Range. A surface equilibrium temperature model is calibrated for one sub-class of vegetation surface and is used to model surface heat energy budget component values for other sub-classes of vegetation. The model values compare favorably with values independently estimated or observed. The data are spatially displayed using the Idrisi GIS. At the microclimatic scale the presence of different sub-classes of vegetation plays a large role in controlling the actual values of the surface heat budget components. This is in contrast to the larger scale at which climatic variables such as air temperature control the overall vegetation type found in the area.

  8. Partitioning of organic carbon in European Russian tundra and taiga ecosystems

    NASA Astrophysics Data System (ADS)

    Oosterwoud, M. R.; Temminghoff, E. J. M.; van der Zee, S. E. A. T. M.

    2009-04-01

    Sorption of dissolved organic carbon (DOC) on mineral phases is an important process for carbon preservation and element cycling in soils. Sorption of DOC to active minerals results in its fractionation because hydrophobic compounds (humic and fulvic acids) will be preferentially sorbed. Binding of cations (Ca2+, Mg2+, Al3+, Fe3+) by the DOC reduces the negative charge and thus its water solubility. At low pH and high cation concentrations, cations may cause coagulation of DOC. The sorption and/or coagulation are important factors in relation to DOC transport. Little is known about DOC partitioning between the soil solid and solution phases of arctic ecosystems. As a consequence of future warming arctic ecosystem will shift from surface water dominated to groundwater dominated systems. In general, permafrost affected soils with shallow active layers, having lateral flow towards the stream with only short contact time to mineral layers, lead to higher hydrophobic (humic and fulvic acid) DOC concentrations in streams compared to permafrost free soils where a larger share of hydrophilic DOC is expected to be discharged into streams. Changes in the delivery of DOC, nutrients and major ions to arctic rivers may have important consequences for primary production and carbon cycling. The partitioning of DOC is a fundamental process needed for modelling current and future stream water quality and solute transport. Therefore, the objective of this study is to determine the sorption and consequent fractionation of DOC in arctic ecosystems. During fieldwork carried out in the summer of 2007 and 2008 in the Russian Komi Republic, we collected soil, soil solution and surface water samples in both a forested taiga and a permafrost affected tundra catchment. The liquid samples were analysed for total organic carbon and inorganic cations. A rapid batch procedure was used for determining the humic-, fulvic- and hydrophilic acid fractions. Using the chemical speciation model

  9. 8. DETAIL OF QUONSET HUT SHOWING BOARDWALK ON TUNDRA CONNECTING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    8. DETAIL OF QUONSET HUT SHOWING BOARDWALK ON TUNDRA CONNECTING QUONSET HUTS THAT DID NOT HAVE INTERCONNNECTING WOOD FRAME CORRIDORS - Fort Randall, Neuro-Psychiatric Ward, Northeast of intersection of California Boulevard & Nurse Drive, Cold Bay, Aleutian Islands, AK

  10. Carbon loss from an unprecedented Arctic tundra wildfire.

    PubMed

    Mack, Michelle C; Bret-Harte, M Syndonia; Hollingsworth, Teresa N; Jandt, Randi R; Schuur, Edward A G; Shaver, Gaius R; Verbyla, David L

    2011-07-27

    Arctic tundra soils store large amounts of carbon (C) in organic soil layers hundreds to thousands of years old that insulate, and in some cases maintain, permafrost soils. Fire has been largely absent from most of this biome since the early Holocene epoch, but its frequency and extent are increasing, probably in response to climate warming. The effect of fires on the C balance of tundra landscapes, however, remains largely unknown. The Anaktuvuk River fire in 2007 burned 1,039 square kilometres of Alaska's Arctic slope, making it the largest fire on record for the tundra biome and doubling the cumulative area burned since 1950 (ref. 5). Here we report that tundra ecosystems lost 2,016 ± 435 g C m(-2) in the fire, an amount two orders of magnitude larger than annual net C exchange in undisturbed tundra. Sixty per cent of this C loss was from soil organic matter, and radiocarbon dating of residual soil layers revealed that the maximum age of soil C lost was 50 years. Scaled to the entire burned area, the fire released approximately 2.1 teragrams of C to the atmosphere, an amount similar in magnitude to the annual net C sink for the entire Arctic tundra biome averaged over the last quarter of the twentieth century. The magnitude of ecosystem C lost by fire, relative to both ecosystem and biome-scale fluxes, demonstrates that a climate-driven increase in tundra fire disturbance may represent a positive feedback, potentially offsetting Arctic greening and influencing the net C balance of the tundra biome.

  11. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics

    PubMed Central

    Burow, Luke C; Woebken, Dagmar; Marshall, Ian PG; Lindquist, Erika A; Bebout, Brad M; Prufert-Bebout, Leslie; Hoehler, Tori M; Tringe, Susannah G; Pett-Ridge, Jennifer; Weber, Peter K; Spormann, Alfred M; Singer, Steven W

    2013-01-01

    Photosynthetic microbial mats possess extraordinary phylogenetic and functional diversity that makes linking specific pathways with individual microbial populations a daunting task. Close metabolic and spatial relationships between Cyanobacteria and Chloroflexi have previously been observed in diverse microbial mats. Here, we report that an expressed metabolic pathway for the anoxic catabolism of photosynthate involving Cyanobacteria and Chloroflexi in microbial mats can be reconstructed through metatranscriptomic sequencing of mats collected at Elkhorn Slough, Monterey Bay, CA, USA. In this reconstruction, Microcoleus spp., the most abundant cyanobacterial group in the mats, ferment photosynthate to organic acids, CO2 and H2 through multiple pathways, and an uncultivated lineage of the Chloroflexi take up these organic acids to store carbon as polyhydroxyalkanoates. The metabolic reconstruction is consistent with metabolite measurements and single cell microbial imaging with fluorescence in situ hybridization and NanoSIMS. PMID:23190731

  12. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics.

    PubMed

    Burow, Luke C; Woebken, Dagmar; Marshall, Ian P G; Lindquist, Erika A; Bebout, Brad M; Prufert-Bebout, Leslie; Hoehler, Tori M; Tringe, Susannah G; Pett-Ridge, Jennifer; Weber, Peter K; Spormann, Alfred M; Singer, Steven W

    2013-04-01

    Photosynthetic microbial mats possess extraordinary phylogenetic and functional diversity that makes linking specific pathways with individual microbial populations a daunting task. Close metabolic and spatial relationships between Cyanobacteria and Chloroflexi have previously been observed in diverse microbial mats. Here, we report that an expressed metabolic pathway for the anoxic catabolism of photosynthate involving Cyanobacteria and Chloroflexi in microbial mats can be reconstructed through metatranscriptomic sequencing of mats collected at Elkhorn Slough, Monterey Bay, CA, USA. In this reconstruction, Microcoleus spp., the most abundant cyanobacterial group in the mats, ferment photosynthate to organic acids, CO2 and H2 through multiple pathways, and an uncultivated lineage of the Chloroflexi take up these organic acids to store carbon as polyhydroxyalkanoates. The metabolic reconstruction is consistent with metabolite measurements and single cell microbial imaging with fluorescence in situ hybridization and NanoSIMS. PMID:23190731

  13. Above and below ground carbon stocks in northeast Siberia tundra ecosystems: a comparison between disturbed and undisturbed areas

    NASA Astrophysics Data System (ADS)

    Weber, L. R.; Pena, H., III; Curasi, S. R.; Ramos, E.; Loranty, M. M.; Alexander, H. D.; Natali, S.

    2014-12-01

    Changes in arctic tundra vegetation have the potential to alter the regional carbon (C) budget, with feedback implications for global climate. A number of studies have documented both widespread increases in productivity as well as shifts in the dominant vegetation. In particular, shrubs have been replacing other vegetation, such as graminoids, in response to changes in their environment. Shrub expansion is thought to be facilitated by exposure of mineral soil and increased nutrient availability, which are often associated with disturbance. Such disturbances can be naturally occurring, typically associated with permafrost degradation or with direct anthropogenic causes such as infrastructure development. Mechanical disturbance associated with human development is not uncommon in tundra and will likely become more frequent as warming makes the Arctic more hospitable for resource extraction and other human activities. As such, this type of disturbance will become an increasingly important component of tundra C balance. Both increased productivity and shrub expansion have clear impacts on ecosystem C cycling through increased C uptake and aboveground (AG) storage. What is less clear, however, are the concurrent changes in belowground (BG) C storage. Here we inventoried AG and BG C stocks in disturbed and undisturbed tundra ecosystems to determine the effects of disturbance on tundra C balance. We measured differences in plant functional type, AG and BG biomass, soil C, and specific leaf area (SLA) for the dominant shrub (Salix) in 2 tundra ecosystems in northern Siberia—an undisturbed moist acidic tundra and an adjacent ecosystem that was used as a road ~50 years ago. Deciduous shrubs and grasses dominated both ecosystems, but biomass for both functional types was higher in the disturbed area. SLA was also higher inside the disturbance. Conversely, nonvascular plants and evergreen shrubs were less abundant in the disturbed area. BG plant biomass was substantially

  14. ON TEACHING ARCELLANA'S "THE MATS".

    ERIC Educational Resources Information Center

    ANDERSON, TOMMY R.

    FRANCISCO ARCELLANA'S "THE MATS," LIKE ANY WELL-CONSTRUCTED SHORT STORY, CAN SERVE AS AN IMPORTANT TEACHING DEVICE IN GUIDING STUDENTS, ESPECIALLY THOSE LEARNING ENGLISH AS A SECOND LANGUAGE, TO READ WITH UNDERSTANDING AND APPRECIATION, THE TECHNIQUES OF CONVERTING VERBALS BACK INTO VERBS, REPLACING ALL PRONOUNS WITH THEIR ANTECEDENTS IN PARALLEL…

  15. Organic Carbon Transformation and Mercury Methylation in Tundra Soils from Barrow Alaska

    DOE Data Explorer

    Liang, L.; Wullschleger, Stan; Graham, David; Gu, B.; Yang, Ziming

    2016-04-20

    This dataset includes information on soil labile organic carbon transformation and mercury methylation for tundra soils from Barrow, Alaska. The soil cores were collected from high-centered polygon (trough) at BEO and were incubated under anaerobic laboratory conditions at both freezing and warming temperatures for up to 8 months. Soil organic carbon including reducing sugars, alcohols, and organic acids were analyzed, and CH4 and CO2 emissions were quantified. Net production of methylmercury and Fe(II)/Fe(total) ratio were also measured and provided in this dataset.

  16. Electrospun chitosan/polyvinyl alcohol nanofibre mats for wound healing.

    PubMed

    Charernsriwilaiwat, Natthan; Rojanarata, Theerasak; Ngawhirunpat, Tanasait; Opanasopit, Praneet

    2014-04-01

    Chitosan (CS) aqueous salt blended with polyvinyl alcohol (PVA) nanofibre mats was prepared by electrospinning. CS was dissolved with hydroxybenzotriazole (HOBt), thiamine pyrophosphate (TPP) and ethylenediaminetetraacetic acid (EDTA) in distilled water without the use of toxic or hazardous solvents. The CS aqueous salts were blended with PVA at different weight ratios, and the effect of the solution ratios was investigated. The morphologies and mechanical and swelling properties of the generated fibres were analysed. Indirect cytotoxicity studies indicated that the CS/PVA nanofibre mats were non-toxic to normal human fibroblast cells. The CS-HOBt/PVA and CS-EDTA/PVA nanofibre mats demonstrated satisfactory antibacterial activity against both gram-positive and gram-negative bacteria, and an in vivo wound healing test showed that the CS-EDTA/PVA nanofibre mats performed better than gauze in decreasing acute wound size during the first week after tissue damage. In conclusion, the biodegradable, biocompatible and antibacterial CS-EDTA/PVA nanofibre mats have potential for use as wound dressing materials.

  17. The Extracellular Matrix in Photosynthetic Mats: A Cyanobacterial Gingerbread House

    NASA Astrophysics Data System (ADS)

    Stuart, R.; Stannard, W.; Bebout, B.; Pett-Ridge, J.; Mayali, X.; Weber, P. K.; Lipton, M. S.; Lee, J.; Everroad, R. C.; Thelen, M.

    2014-12-01

    Hypersaline laminated cyanobacterial mats are excellent model systems for investigating photoautotrophic contributions to biogeochemical cycling on a millimeter scale. These self-sustaining ecosystems are characterized by steep physiochemical gradients that fluctuate dramatically on hour timescales, providing a dynamic environment to study microbial response. However, elucidating the distribution of energy from light absorption into biomass requires a complete understanding of the various constituents of the mat. Extracellular polymeric substances (EPS), which can be composed of proteins, polysaccharides, lipids and DNA are a major component of these mats and may function in the redistribution of nutrients and metabolites within the community. To test this notion, we established a model mat-building culture for comparison with the phylogenetically diverse natural mat communities. In these two systems we determined how proteins and glycans in the matrix changed as a function of light and tracked nutrient flow from the matrix. Using mass spectrometry metaproteomics analysis, we found homologous proteins in both field and culture extracellular matrix that point to cyanobacterial turnover of amino acids, inorganic nutrients, carbohydrates and nucleic acids from the EPS. Other abundant functions identified included oxidative stress response from both the cyanobacteria and heterotrophs and cyanobacterial structural proteins that may play a role in mat cohesion. Several degradative enzymes also varied in abundance in the EPS in response to light availability, suggesting active secretion. To further test cyanobacterial EPS turnover, we generated isotopically-labeled EPS and used NanoSIMS to trace uptake of this labeled EPS. Our findings suggest Cyanobacteria may facilitate nutrient transfer to other groups, as well as uptake of their own products through degradation of EPS components. This work provides evidence for the essential roles of EPS for storage, structural

  18. ProMAT: protein microarray analysis tool

    SciTech Connect

    White, Amanda M.; Daly, Don S.; Varnum, Susan M.; Anderson, Kevin K.; Bollinger, Nikki; Zangar, Richard C.

    2006-04-04

    Summary: ProMAT is a software tool for statistically analyzing data from ELISA microarray experiments. The software estimates standard curves, sample protein concentrations and their uncertainties for multiple assays. ProMAT generates a set of comprehensive figures for assessing results and diagnosing process quality. The tool is available for Windows or Mac, and is distributed as open-source Java and R code. Availability: ProMAT is available at http://www.pnl.gov/statistics/ProMAT. ProMAT requires Java version 1.5.0 and R version 1.9.1 (or more recent versions) which are distributed with the tool.

  19. Phenological response of tundra plants to background climate variation tested using the International Tundra Experiment.

    PubMed

    Oberbauer, S F; Elmendorf, S C; Troxler, T G; Hollister, R D; Rocha, A V; Bret-Harte, M S; Dawes, M A; Fosaa, A M; Henry, G H R; Høye, T T; Jarrad, F C; Jónsdóttir, I S; Klanderud, K; Klein, J A; Molau, U; Rixen, C; Schmidt, N M; Shaver, G R; Slider, R T; Totland, Ø; Wahren, C-H; Welker, J M

    2013-08-19

    The rapidly warming temperatures in high-latitude and alpine regions have the potential to alter the phenology of Arctic and alpine plants, affecting processes ranging from food webs to ecosystem trace gas fluxes. The International Tundra Experiment (ITEX) was initiated in 1990 to evaluate the effects of expected rapid changes in temperature on tundra plant phenology, growth and community changes using experimental warming. Here, we used the ITEX control data to test the phenological responses to background temperature variation across sites spanning latitudinal and moisture gradients. The dataset overall did not show an advance in phenology; instead, temperature variability during the years sampled and an absence of warming at some sites resulted in mixed responses. Phenological transitions of high Arctic plants clearly occurred at lower heat sum thresholds than those of low Arctic and alpine plants. However, sensitivity to temperature change was similar among plants from the different climate zones. Plants of different communities and growth forms differed for some phenological responses. Heat sums associated with flowering and greening appear to have increased over time. These results point to a complex suite of changes in plant communities and ecosystem function in high latitudes and elevations as the climate warms.

  20. Vegetation shifts observed in arctic tundra 17 years after fire

    USGS Publications Warehouse

    Barrett, Kirsten; Rocha, Adrian V.; van de Weg, Martine Janet; Shaver, Gaius

    2012-01-01

    With anticipated climate change, tundra fires are expected to occur more frequently in the future, but data on the long-term effects of fire on tundra vegetation composition are scarce. This study addresses changes in vegetation structure that have persisted for 17 years after a tundra fire on the North Slope of Alaska. Fire-related shifts in vegetation composition were assessed from remote-sensing imagery and ground observations of the burn scar and an adjacent control site. Early-season remotely sensed imagery from the burn scar exhibits a low vegetation index compared with the control site, whereas the late-season signal is slightly higher. The range and maximum vegetation index are greater in the burn scar, although the mean annual values do not differ among the sites. Ground observations revealed a greater abundance of moss in the unburned site, which may account for the high early growing season normalized difference vegetation index (NDVI) anomaly relative to the burn. The abundance of graminoid species and an absence of Betula nana in the post-fire tundra sites may also be responsible for the spectral differences observed in the remotely sensed imagery. The partial replacement of tundra by graminoid-dominated ecosystems has been predicted by the ALFRESCO model of disturbance, climate and vegetation succession.

  1. Habitat selection by tundra swans on Northern Alaska breeding grounds

    USGS Publications Warehouse

    Earnst, Susan L.; Rothe, T.

    2004-01-01

    Habitat selection by the Tundra Swan (Cygnus columbianus columbianus) was evaluated on the Colville River Delta prior to oil field development (1982-1989). Tundra Swan territories comprised a lake, used for refuge and foraging, and terrestrial habitats and ponds near the lakea??s perimeter used for foraging and nesting. Tundra swan sightings from early and late summer aerial surveys were used to investigate habitat selection at the territory and within-territory scale. At the territory or lake scale, swan sightings/lake increased with lake size, and increased from discrete to tapped (i.e., connected to a river channel) to drained lakes within size categories. Overall, 49% of the variation in swan sightings/lake was explained by lake size and type, a size-x-type interaction term, and the proportion of lake perimeter comprised of Halophytic Ponds and Halophytic Wet Meadows. At the within-territory or within-lake scale, foraging swans significantly selected Halophytic Ponds, Halophytic Wet Meadows, and Fresh Ponds relative to Uplands; nesting swans significantly selected Halophytic Ponds and significantly avoided Fresh Wet Meadows relative to Uplands. Vegetation sampling indicated that sites used by Tundra Swans on river channels and tapped lakes were significantly more likely to have Sheathed Pondweed (Potamogeton vaginatus) than control sites. The three major components of Tundra Swan diet were Carex sedges, Sheathed Pondweed, and algae, together comprising 85% of identifiable plant fragments in feces.

  2. Future distribution of tundra refugia in northern Alaska

    USGS Publications Warehouse

    Hope, Andrew G.; Waltari, Eric; Payer, David C.; Cook, Joseph A.; Talbot, Sandra L.

    2013-01-01

    Climate change in the Arctic is a growing concern for natural resource conservation and management as a result of accelerated warming and associated shifts in the distribution and abundance of northern species. We introduce a predictive framework for assessing the future extent of Arctic tundra and boreal biomes in northern Alaska. We use geo-referenced museum specimens to predict the velocity of distributional change into the next century and compare predicted tundra refugial areas with current land-use. The reliability of predicted distributions, including differences between fundamental and realized niches, for two groups of species is strengthened by fossils and genetic signatures of demographic shifts. Evolutionary responses to environmental change through the late Quaternary are generally consistent with past distribution models. Predicted future refugia overlap managed areas and indicate potential hotspots for tundra diversity. To effectively assess future refugia, variable responses among closely related species to climate change warrants careful consideration of both evolutionary and ecological histories.

  3. Future distribution of tundra refugia in northern Alaska

    NASA Astrophysics Data System (ADS)

    Hope, Andrew G.; Waltari, Eric; Payer, David C.; Cook, Joseph A.; Talbot, Sandra L.

    2013-10-01

    Climate change in the Arctic is a growing concern for natural resource conservation and management as a result of accelerated warming and associated shifts in the distribution and abundance of northern species. We introduce a predictive framework for assessing the future extent of Arctic tundra and boreal biomes in northern Alaska. We use geo-referenced museum specimens to predict the velocity of distributional change into the next century and compare predicted tundra refugial areas with current land-use. The reliability of predicted distributions, including differences between fundamental and realized niches, for two groups of species is strengthened by fossils and genetic signatures of demographic shifts. Evolutionary responses to environmental change through the late Quaternary are generally consistent with past distribution models. Predicted future refugia overlap managed areas and indicate potential hotspots for tundra diversity. To effectively assess future refugia, variable responses among closely related species to climate change warrants careful consideration of both evolutionary and ecological histories.

  4. A Comparative Review of North American Tundra Delineations

    NASA Technical Reports Server (NTRS)

    Silver, Kirk C.; Carroll, Mark

    2013-01-01

    Recent profound changes have been observed in the Arctic environment, including record low sea ice extents and high latitude greening. Studying the Arctic and how it is changing is an important element of climate change science. The Tundra, an ecoregion of the Arctic, is directly related to climate change due to its effects on the snow ice feedback mechanism and greenhouse gas cycling. Like all ecoregions, the Tundra border is shifting, yet studies and policies require clear delineation of boundaries. There are many options for ecoregion classification systems, as well as resources for creating custom maps. To help decision makers identify the best classification system possible, we present a review of North American Tundra ecoregion delineations and further explore the methodologies, purposes, limitations, and physical properties of five common ecoregion classification systems. We quantitatively compare the corresponding maps by area using a geographic information system.

  5. Methylmercury enters an aquatic food web through acidophilic microbial mats in Yellowstone National Park, Wyoming

    USGS Publications Warehouse

    Boyd, E.S.; King, S.; Tomberlin, J.K.; Nordstrom, D.K.; Krabbenhoft, D.P.; Barkay, T.; Geesey, G.G.

    2009-01-01

    Summary Microbial mats are a visible and abundant life form inhabiting the extreme environments in Yellowstone National Park (YNP), WY, USA. Little is known of their role in food webs that exist in the Park's geothermal habitats. Eukaryotic green algae associated with a phototrophic green/purple Zygogonium microbial mat community that inhabits low-temperature regions of acidic (pH ??? 3.0) thermal springs were found to serve as a food source for stratiomyid (Diptera: Stratiomyidae) larvae. Mercury in spring source water was taken up and concentrated by the mat biomass. Monomethylmercury compounds (MeHg +), while undetectable or near the detection limit (0.025 ng l -1) in the source water of the springs, was present at concentrations of 4-7 ng g-1 dry weight of mat biomass. Detection of MeHg + in tracheal tissue of larvae grazing the mat suggests that MeHg+ enters this geothermal food web through the phototrophic microbial mat community. The concentration of MeHg+ was two to five times higher in larval tissue than mat biomass indicating MeHg+ biomagnification occurred between primary producer and primary consumer trophic levels. The Zygogonium mat community and stratiomyid larvae may also play a role in the transfer of MeHg+ to species in the food web whose range extends beyond a particular geothermal feature of YNP. ?? 2008 The Authors. Journal compilation ?? 2008 Society for Applied Microbiology and Blackwell Publishing Ltd.

  6. Methylmercury enters an aquatic food web through acidophilic microbial mats in Yellowstone National Park, Wyoming.

    PubMed

    Boyd, Eric S; King, Susan; Tomberlin, Jeffery K; Nordstrom, D Kirk; Krabbenhoft, David P; Barkay, Tamar; Geesey, Gill G

    2009-04-01

    Microbial mats are a visible and abundant life form inhabiting the extreme environments in Yellowstone National Park (YNP), WY, USA. Little is known of their role in food webs that exist in the Park's geothermal habitats. Eukaryotic green algae associated with a phototrophic green/purple Zygogonium microbial mat community that inhabits low-temperature regions of acidic (pH approximately 3.0) thermal springs were found to serve as a food source for stratiomyid (Diptera: Stratiomyidae) larvae. Mercury in spring source water was taken up and concentrated by the mat biomass. Monomethylmercury compounds (MeHg(+)), while undetectable or near the detection limit (0.025 ng l(-1)) in the source water of the springs, was present at concentrations of 4-7 ng g(-1) dry weight of mat biomass. Detection of MeHg(+) in tracheal tissue of larvae grazing the mat suggests that MeHg(+) enters this geothermal food web through the phototrophic microbial mat community. The concentration of MeHg(+) was two to five times higher in larval tissue than mat biomass indicating MeHg(+) biomagnification occurred between primary producer and primary consumer trophic levels. The Zygogonium mat community and stratiomyid larvae may also play a role in the transfer of MeHg(+) to species in the food web whose range extends beyond a particular geothermal feature of YNP.

  7. Terrimonas arctica sp. nov., isolated from Arctic tundra soil.

    PubMed

    Jiang, Fan; Qiu, Xia; Chang, Xulu; Qu, Zhihao; Ren, Lvzhi; Kan, Wenjing; Guo, Youhao; Fang, Chengxiang; Peng, Fang

    2014-11-01

    A novel, Gram-stain-negative, aerobic, non-motile and rod-shaped bacterium, designated R9-86(T), was isolated from tundra soil collected near Ny-Ålesund, Svalbard Archipelago, Norway (78° N). Growth occurred at 4-28 °C (optimum, 22-25 °C) and at pH 6.0-9.0 (optimum, pH 7.0). Flexirubin-type pigments were absent. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain R9-86(T) belonged to the genus Terrimonas in the family Chitinophagaceae. 16S rRNA gene sequence similarities between strain R9-86(T) and the type strains of species of the genus Terrimonas with validly published names ranged from 93.7 to 95.0%. Strain R9-86(T) contained iso-C(15:1)-G (25.7%), iso-C(15:0) (24.5%), iso-C(17:0)-3OH (18.3%) and summed feature 3 (C(16:1)ω7c and/or C(16:1)ω6c, 8.7%) as its major cellular fatty acids; phosphatidylethanolamine and an unknown polar lipid as its main polar lipids, and MK-7 as its predominant respiratory quinone. The DNA G+C content was 48.4 mol%. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain R9-86(T) is considered to represent a novel species of the genus Terrimonas, for which the name Terrimonas arctica sp. nov. is proposed. The type strain is R9-86(T) ( =CCTCC AB 2011004(T) =NRRL B-59114(T)).

  8. Geochemical characterization of Arctic tundra and implications for organic matter degradation

    NASA Astrophysics Data System (ADS)

    Gu, B.; Herndon, E.; Graham, D. E.; Phelps, T. J.; Wullschleger, S. D.; Liang, L.

    2013-12-01

    Tundra soils are uniquely cold terrestrial environments that face irrevocable change under warming climate conditions. Specifically, many tundra soils store large quantities of organic carbon that may rapidly degrade with increasing temperature, releasing C into drainage systems or to the atmosphere as greenhouse gases (CH4, CO2). In order to predict rates of C release from tundra soils, it is necessary to quantify how biogeochemical factors such as pore water chemistry, terminal electron acceptor availability, and mineral adsorption regulate rates and pathways of soil organic carbon (SOC) degradation. In this study, we examine spatial and seasonal patterns of aqueous geochemistry and SOC characteristics from across an area of tundra landscape in the Arctic. We aim to identify factors that increase or decrease rates of SOC degradation, including: 1) the composition of organic substrates, 2) abundance of terminal electron acceptors, 3) vertical transport and spatial variability of both organic and inorganic compounds, and 4) adsorption to mineral surfaces. Soil and water samples were obtained from the Barrow Environmental Observatory (BEO) in northern Alaska as part of the Next Generation Ecosystem Experiment (NGEE) Arctic project. Tundra at the BEO is characterized by permafrost below ~60 cm and polygonal features that induce topographic gradients of water saturation. Soils are organic-rich and store large amounts of slowly decomposing plant material. Chemical and physical extractions were used to obtain operationally-defined pools of SOC to evaluate their mineral associations. Water samples collected in early and late summers were analyzed for pH, electrical conductivity, and dissolved concentrations of anions, cations, organic carbon, inorganic carbon, and ferrous iron, as well as dissolved and soil gases (CH4 and CO2). We observe a steep pH gradient, with acidic pH in surface waters and near neutral pH in pore waters >20 cm below the surface. Dissolved organic

  9. Expansion of forest stands into tundra in the Noatak National Preserve, northwest Alaska

    USGS Publications Warehouse

    Suarez, F.; Binkley, D.; Kaye, M.W.; Stottlemyer, R.

    1999-01-01

    Temperatures across the northern regions of North America have been increasing for 150 years, and forests have responded to this increase. In the Noatak National Preserve in Alaska, white spruce (Picea glauca [Moench] Voss) forests reach their northern limit, occurring primarily on well-drained sites and as gallery forests along streams. Rolling plateaus of tundra separate the white spruce forests into disjunct stands. We examined patterns of tree age, tree growth, and tree encroachment into tundra ecosystems in six stands along the Agashashok River. Warming over the past 150 years appears to have increased tree growth and resulted in forest expansion into adjacent tundra ecosystems. The forest/tundra ecotone shifted by about 80 to 100 m into the tundra in the past 200 years, as evidenced by declining maximum tree age with distance towards the tundra. The decadal-scale pattern of tree establishment at the farthest extent of trees into the tundra (the tundra-forest ecotone) correlated with the detrended growth index for trees within the forests; climate conditions that led to higher tree growth appeared to foster tree establishment in the tundra. This recent forest expansion has occurred across topographic boundaries, from well-drained soils on slopes onto poorly drained, flatter areas of tundra. Further expansion of the forests may be limited by more severe wind exposure and poor drainage that make the majority of tundra less suitable for trees.

  10. Direct piezoelectric responses of soft composite fiber mats

    NASA Astrophysics Data System (ADS)

    Varga, M.; Morvan, J.; Diorio, N.; Buyuktanir, E.; Harden, J.; West, J. L.; Jákli, A.

    2013-04-01

    Recently soft fiber mats electrospun from solutions of Barium Titanate (BT) ferroelectric ceramics particles and polylactic acid (PLA) were found to have large (d33 ˜ 1 nm/V) converse piezoelectric signals offering a myriad of applications ranging from active implants to smart textiles. Here, we report direct piezoelectric measurements (electric signals due to mechanical stress) of the BT/PLA composite fiber mats at several BT concentrations. A homemade testing apparatus provided AC stresses in the 50 Hz-1.5 kHz-frequency range. The piezoelectric constant d33 ˜ 0.5 nC/N and the compression modulus Y ˜ 104-105 Pa found are in agreement with the prior converse piezoelectric and compressibility measurements. Importantly, the direct piezoelectric signal is large enough to power a small LCD by simple finger tapping of a 0.15 mm thick 2-cm2 area mat. We propose using these mats in active Braille cells and in liquid crystal writing tablets.

  11. Bacterial contamination control mats: a comparative study.

    PubMed Central

    Meddick, H. M.

    1977-01-01

    The ability of six different types of contamination control mats currently in use at the entrances to theatre suites and other clean areas to remove bacteria-carrying particles from theatre trolley wheeels was compared. Marked differences in the effectiveness of this property were obtained; and all mats showed some disadvantages. Modification of one of the mats has resulted in improved efficiency under working conditions. Images Plate 1 PMID:267665

  12. Archaean metabolic evolution of microbial mats

    PubMed Central

    Nisbet, E. G.; Fowler, C. M. R.

    1999-01-01

    Microbial mats of coexisting bacteria and archaea date back to the early Archaean: many of the major steps in early evolution probably took place within them. The earliest mats may have formed as biofilms of cooperative chemolithotrophs in hyperthermophile settings, with microbial exploitation of diversifying niches. Anoxygenic photosynthesis using bacteriochlorophyll could have allowed mats, including green gliding bacteria, to colonize anaerobic shallow-water mesothermophile habitats. Exploitation of the Calvin–Benson cycle by purple bacteria allowed diversification of microbial mats, with some organisms in more aerobic habitats, while green sulphur bacteria specialized in anaerobic niches. Cyanobacterial evolution led to more complex mats and plankton, allowing widespread colonization of the globe and the creation of further aerobic habitat. Microbial mat structure may reflect this evolutionary development in broad terms, with anaerobic lower levels occupied by archaeal and bacterial respirers, fermenters and green bacteria, while the higher levels contain aerobic purple bacteria and are dominated by cyanobacteria. A possible origin of eukaryotes is from a fusion of symbiotic partners living across a redox boundary in a mat. The geological record of Archaean mats may be present as isotopic fingerprints: with the presence of cyanobacteria, mats may have had a nearly modern structure as early as 3.5 Ga ago (1 Ga = 109 years).

  13. MatLab Script and Functional Programming

    NASA Technical Reports Server (NTRS)

    Shaykhian, Gholam Ali

    2007-01-01

    MatLab Script and Functional Programming: MatLab is one of the most widely used very high level programming languages for scientific and engineering computations. It is very user-friendly and needs practically no formal programming knowledge. Presented here are MatLab programming aspects and not just the MatLab commands for scientists and engineers who do not have formal programming training and also have no significant time to spare for learning programming to solve their real world problems. Specifically provided are programs for visualization. The MatLab seminar covers the functional and script programming aspect of MatLab language. Specific expectations are: a) Recognize MatLab commands, script and function. b) Create, and run a MatLab function. c) Read, recognize, and describe MatLab syntax. d) Recognize decisions, loops and matrix operators. e) Evaluate scope among multiple files, and multiple functions within a file. f) Declare, define and use scalar variables, vectors and matrices.

  14. Acidobacteria dominate the active bacterial communities of Arctic tundra with widely divergent winter-time snow accumulation and soil temperatures.

    PubMed

    Männistö, Minna K; Kurhela, Emilia; Tiirola, Marja; Häggblom, Max M

    2013-04-01

    The timing and extent of snow cover is a major controller of soil temperature and hence winter-time microbial activity and plant diversity in Arctic tundra ecosystems. To understand how snow dynamics shape the bacterial communities, we analyzed the bacterial community composition of windswept and snow-accumulating shrub-dominated tundra heaths of northern Finland using DNA- and RNA-based 16S rRNA gene community fingerprinting (terminal restriction fragment polymorphism) and clone library analysis. Members of the Acidobacteria and Proteobacteria dominated the bacterial communities of both windswept and snow-accumulating habitats with the most abundant phylotypes corresponding to subdivision (SD) 1 and 2 Acidobacteria in both the DNA- and RNA-derived community profiles. However, different phylotypes within Acidobacteria were found to dominate at different sampling dates and in the DNA- vs. RNA-based community profiles. The results suggest that different species within SD1 and SD2 Acidobacteria respond to environmental conditions differently and highlight the wide functional diversity of these organisms even within the SD level. The acidic tundra soils dominated by ericoid shrubs appear to select for diverse stress-tolerant Acidobacteria that are able to compete in the nutrient poor, phenolic-rich soils. Overall, these communities seem stable and relatively insensitive to the predicted changes in the winter-time snow cover.

  15. Shrub expansion in tundra ecosystems: dynamics, impacts and research priorities

    NASA Astrophysics Data System (ADS)

    Myers-Smith, Isla H.; Forbes, Bruce C.; Wilmking, Martin; Hallinger, Martin; Lantz, Trevor; Blok, Daan; Tape, Ken D.; Macias-Fauria, Marc; Sass-Klaassen, Ute; Lévesque, Esther; Boudreau, Stéphane; Ropars, Pascale; Hermanutz, Luise; Trant, Andrew; Siegwart Collier, Laura; Weijers, Stef; Rozema, Jelte; Rayback, Shelly A.; Schmidt, Niels Martin; Schaepman-Strub, Gabriela; Wipf, Sonja; Rixen, Christian; Ménard, Cécile B.; Venn, Susanna; Goetz, Scott; Andreu-Hayles, Laia; Elmendorf, Sarah; Ravolainen, Virve; Welker, Jeffrey; Grogan, Paul; Epstein, Howard E.; Hik, David S.

    2011-12-01

    Recent research using repeat photography, long-term ecological monitoring and dendrochronology has documented shrub expansion in arctic, high-latitude and alpine tundra ecosystems. Here, we (1) synthesize these findings, (2) present a conceptual framework that identifies mechanisms and constraints on shrub increase, (3) explore causes, feedbacks and implications of the increased shrub cover in tundra ecosystems, and (4) address potential lines of investigation for future research. Satellite observations from around the circumpolar Arctic, showing increased productivity, measured as changes in ‘greenness’, have coincided with a general rise in high-latitude air temperatures and have been partly attributed to increases in shrub cover. Studies indicate that warming temperatures, changes in snow cover, altered disturbance regimes as a result of permafrost thaw, tundra fires, and anthropogenic activities or changes in herbivory intensity are all contributing to observed changes in shrub abundance. A large-scale increase in shrub cover will change the structure of tundra ecosystems and alter energy fluxes, regional climate, soil-atmosphere exchange of water, carbon and nutrients, and ecological interactions between species. In order to project future rates of shrub expansion and understand the feedbacks to ecosystem and climate processes, future research should investigate the species or trait-specific responses of shrubs to climate change including: (1) the temperature sensitivity of shrub growth, (2) factors controlling the recruitment of new individuals, and (3) the relative influence of the positive and negative feedbacks involved in shrub expansion.

  16. A Microwave Radiance Assimilation Study for a Tundra Snowpack

    NASA Technical Reports Server (NTRS)

    Kim, Edward; Durand, Michael; Margulis, Steve; England, Anthony

    2010-01-01

    Recent studies have begun exploring the assimilation of microwave radiances for the modeling and retrieval of snow properties. At a point scale, and for short durations (i week), radiance assimilation (RA) results are encouraging. However, in order to determine how practical RA might be for snow retrievals when applied over longer durations, larger spatial scales, and/or different snow types, we must expand the scope of the tests. In this paper we use coincident microwave radiance measurements and station data from a tundra site on the North Slope of Alaska. The field data are from the 3rd Radio-brightness Energy Balance Experiment (REBEX-3) carried out in 1994-95 by the University of Michigan. This dataset will provide a test of RA over months instead of one week, and for a very different type of snow than previous snow RA studies. We will address the following questions: flow well can a snowpack physical model (SM), forced with local weather, match measured conditions for a tundra snowpack?; How well can a microwave emission model, driven by the snowpack model, match measured microwave brightnesses for a tundra snowpack?; How well does RA increase or decrease the fidelity of estimates of snow depth and temperatures for a tundra snowpack?

  17. DOES NITROGEN PARTITIONING PROMOTE SPECIES DIVERSITY IN ARCTIC TUSSOCK TUNDRA?

    EPA Science Inventory

    We used 15N soil-labeling techniques to examine how the dominant species in a N-limited, tussock tundra plant community partitioned soil N, and how such partitioning may contribute to community organization. The five most productive species were well differentiated with respect ...

  18. 14. VIEW FROM TUNDRA CURVES (ON TRAIL RIDGE ROAD) SHOWING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    14. VIEW FROM TUNDRA CURVES (ON TRAIL RIDGE ROAD) SHOWING FALL RIVER ROAD RISING FROM BENEATH CHAPIN PASS (AT EXTREME RIGHT) TO FALL RIVER PASS (FAR LEFT). - Fall River Road, Between Estes Park & Fall River Pass, Estes Park, Larimer County, CO

  19. Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska.

    PubMed

    Kim, Hye Min; Jung, Ji Young; Yergeau, Etienne; Hwang, Chung Yeon; Hinzman, Larry; Nam, Sungjin; Hong, Soon Gyu; Kim, Ok-Sun; Chun, Jongsik; Lee, Yoo Kyung

    2014-08-01

    The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0-10 cm to 10-20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen (NH4+ and NO3-). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska.

  20. Emissions of biogenic sulfur gases from Alaskan tundra

    SciTech Connect

    Hines, M.E.; Morrison, M.C.

    1992-10-30

    Fluxes of the biogenic sulfur gases carbonyl sulfide (COS), dimethyl sulfide (DMS), methyl mercaptan (MeSH), and carbon disulfide (CS{sub 2}) were determined from several freshwater and coastal marine tundra habitats using a dynamic enclosure method and gas chromatography. In the freshwater tundra sites, highest emissions, with a mean of 6.0 nmol m{sup {minus}2}h{sup {minus}1} (1.5-10) occurred in the water-saturated wet meadow areas inhabited by grasses, sedges, and Shpagnum mosses. In the drier upland tundra sites, highest fluxes occurred in areas inhabited by mixed vegetation and labrador tea at 3.0 nmol m{sup {minus}2}h{sup {minus}1} (0-8.3) and lowest fluxes were from lichen-dominated areas at 0.8 nmol m{sup {minus}2}h{sup {minus}1}. Sulfur emissions from a lake surface were also low at 0.8 nmol m{sup {minus}2}h{sup {minus}1}. Of the compounds measured, DMS was the dominant gas emitted from all of these sites. Sulfur emissions from the marine sites were up to 20-fold greater than fluxes in the freshwater habitats and were also dominated by DMS. Emissions of DMS were highest from intertidal soils inhabited by Carex subspathacea. This Carex sp. was grazed thoroughly by geese and DMS fluxes doubled when goose feces were left within the flux chamber. Emissions were much lower from other types of vegetation which were more spatially dominant. Sulfur emissions from tundra were among the lowest reported in the literature. When emission data were extrapolated to include all tundra globally, the global flux of biogenic sulfur from this biome is 2-3 x 10{sup 8} g yr{sup {minus}1}. This represents less than 0.001% of the estimated annual global flux of biogenic sulfur and <0.01% of the estimated terrestrial flux. The low emissions are attributed to the low availability of sulfate, certain hydrological characteristics of tundra, and the tendency for tundra to accumulate organic matter. 31 refs., 1 fig., 2 tabs.

  1. Emissions of biogenic sulfur gases from Alaskan tundra

    NASA Technical Reports Server (NTRS)

    Hines, Mark E.; Morrison, Michael C.

    1992-01-01

    Fluxes of the biogenic sulfur gases carbonyl sulfide (COS), dimethyl sulfide (DMS), methyl mercaptan (MeSH), and carbon disulfide (CS2) were determined for several freshwater and coastal marine tundra habitats using a dynamic enclosure method and gas chromatography. In the freshwater tundra sites, highest emissions, with a mean of 6.0 nmol/m(sup -2)H(sup -1) (1.5-10) occurred in the water-saturated wet meadow areas inhabited by grasses, sedges, and Sphagnum mosses. In the drier upland tundra sites, highest fluxes occurred in areas inhabited by mixed vegetation and labrador tea at 3.0 nmol/m(sup -2)h(sup -1) (0-8.3) and lowest fluxes were from lichen-dominated areas at 0.9 nmol/m(sup -2)h(sup -1). Sulfur emissions from a lake surface were also low at 0.8 nmol/m(sup -2)h(sup -1). Of the compounds measured, DMS was the dominant gas emitted from all of these sites. Sulfure emissions from the marine sites were up to 20-fold greater than fluxes in the freshwater habitats and were also dominated by DMS. Emissions of DMS were highest from intertidal soils inhabited by Carex subspathacea (150-250 nmol/m(sup -2)h(sup -1)). This Carex sp. was grazed thoroughly by geese and DMS fluxes doubled when goose feces were left within the flux chamber. Emissions were much lower from other types of vegetation which were more spatially dominant. Sulfure emissions from tundra were among the lowest reported in the literature. When emission data were extrapolated to include all tundra globally, the global flux of biogenic sulfur from this biome is 2-3 x 10(exp 8) g/yr. This represents less than 0.001 percent of the estimated annual global flux (approximately 50 Tg) of biogenic sulfur and less than 0.01 percent of the estimated terrestrial flux. The low emissions are attributed to the low availability of sulfate, certain hydrological characteristics of tundra, and the tendency for tundra to accumulate organic matter.

  2. Bentonite mat demonstration. Final report

    SciTech Connect

    Serrato, M.G.

    1994-12-30

    The Bentonite Mat Demonstration was developed to provide the Environmental Restoration Department with field performance characteristics and engineering data for an alternative closure cover system configuration. The demonstration was initiated in response to regulatory concerns regarding the use of an alternative cover system for future design configurations. These design considerations are in lieu of the US Environmental Protection Agency (EPA) Recommended Design for Closure Cover Systems and specifically a single compacted kaolin clay layer with a hydraulic conductivity of 1 {times} 10{sup {minus}7} cm/sec. This alternative configuration is a composite geosynthetic material hydraulic barrier consisting from bottom to top: 2 ft compacted sandy clay layer (typical local Savannah River Site soil type) that is covered by a bentonite mat--geosynthetic clay liner (GCL) and is overlaid by a 40 mil High Density Polyethylene (HDPE) geomembrane--flexible membrane liner. This effort was undertaken to obtain and document the necessary field performance/engineering data for future designs and meet regulatory technical requirements for an alternative cover system configuration. The composite geosynthetic materials hydraulic barrier is the recommended alternative cover system configuration for containment of hazardous and low level radiological waste layers that have a high potential of subsidence to be used at the Savannah River Site (SRS). This alternative configuration mitigates subsidence effects in providing a flexible, lightweight cover system to maintain the integrity of the closure. The composite geosynthetic materials hydraulic barrier is recommended for the Sanitary Landfill and Low Level Radiological Waste Disposal Facility (LLRWDF) Closures.

  3. Effects of mat characteristics on plantar pressure patterns and perceived mat properties during landing in gymnastics.

    PubMed

    Pérez-Soriano, Pedro; Llana-Belloch, Salvador; Morey-Klapsing, Gaspar; Perez-Turpin, Jose Antonio; Cortell-Tormo, Juan Manuel; van den Tillaar, Roland

    2010-11-01

    Shock absorption and stability during landings is provided by both, gymnast ability and mat properties. The aims of this study were to determine the influence of different mat constructions on their energy absorption and stability capabilities, and to analyse how these properties affect gymnast's plantar pressures as well as subjective mat perception during landing. Six mats were tested using a standard mechanical drop test. In addition, plantar pressures and subjective perception during landing were obtained from 15 expert gymnasts. The different mats influenced plantar pressures and gymnasts' subjective perception during landing of gymnasts. Significant correlations between plantar pressures at the medial metatarsal and lateral metatarsal zones of the gymnasts' feet with the different shock absorption characteristics of the mats were found. However, subjective perception tests were not able to discriminate mat functionality between the six mats as no significant correlations between the mechanical mat properties with the subjective perception of these properties were found. This study demonstrated that plantar pressures are a useful tool for discriminating different landing mats. Using similar approaches, ideally including kinematics as well, could help us in our understanding about the influences of different mats upon gymnast-mat interaction. PMID:21309299

  4. Canopy Spectral Imaging (NDVI) As A Proxy For Shrub Biomass And Ecosystem Carbon Fluxes Across Arctic Tundra Habitats

    NASA Astrophysics Data System (ADS)

    Flower, C. E.; Welker, J. M.; Gonzalez-Meler, M. A.

    2015-12-01

    There is widespread consensus that climate change is contributing to rapid vegetation shifts in the ecologically sensitive Arctic tundra. These tussock grass dominated systems are shifting to tussock/woody shrub communities leading to likely alterations in carbon (C) sequestration and ecosystem productivity, which in turn can manifest in "greening" and changes in normalized difference vegetation index values (NDVI). While the expansion of woody vegetation is well established, our understanding of the ecosystem dynamics associated with this new habitat remain largely unknown. To untangle how the Arctic tundra may be impacted by these vegetation shifts we paired vegetation measurements (i.e. shrub biomass, leaf area, and shrub canopy area) and ecosystem C fluxes (e.g. net ecosystem exchange, NEE, and ecosystem respiration) with ground-level measurements of NDVI. Measurements were conducted at the Toolik Field Station in dry heath and moist acidic tundra habitats which are two primary habitat types on the North Slope of Alaska. We found strong positive relationships between shrub leaf area and biomass as well as shrub canopy area and biomass, relationships that were corroborated with NDVI measurements. This lends support for the use of NDVI as a proxy measurement of leaf area and shrub biomass. Additionally, NDVI was negatively correlated with ecosystem respiration across habitats, with respiratory fluxes consistently higher in the moist acidic relative to the dry heath tundra. Finally, we observed a significant positive nonlinear relationship between NEE and NDVI (R2~0.8; P<0.01). Shrub removal revealed that NEE was strongly controlled by woody shrubs. The positive relationship between NDVI and NEE highlights the potential shifts in the C balance of the Arctic tundra associated with woody encroachment. This increased plant productivity may offset greenhouse gas losses from permafrost degradation contributing some resilience to this system otherwise considered a

  5. Impacts of Arctic Climate Change on Tundra Fire Regimes at Interannual to Millennial Timescales

    NASA Astrophysics Data System (ADS)

    Hu, F.; Young, A. M.; Chipman, M. L.; Duffy, P.; Higuera, P. E.

    2014-12-01

    Tundra burning is emerging as a key process in the rapidly changing Arctic, and knowledge of tundra fire-regime responses to climate change is essential for projecting Earth system dynamics. This presentation will focus on climate-fire relationships in the Arctic, spatiotemporal patterns of Holocene tundra burning, and the effects of tundra burning on carbon cycling. Analysis of historical records reveals that across the Arctic, tundra burning occurred primarily in areas where mean summer temperature exceeded 9 °C and total summer precipitation was below 115 mm. In Alaska, summer temperature and precipitation explain >90% of the interannual variability in tundra area burned from AD 1950-2009, with thresholds of 10.5 °C and 140 mm. These patterns imply tipping points in tundra fire-regime responses to climate change. The frequency of tundra fires has varied greatly across space and through time. Approximately 1.0% of the circum-Arctic tundra burned from AD 2002-2013, and 4.5% of the Alaskan tundra burned from AD 1950-2009. The latter encompassed ecoregions with fire rotation periods ranging from ~400 to 13,640 years. Charcoal analysis of lake sediments also shows that Arctic tundra can sustain a wide range of fire regimes. Fires were rare on the Alaskan North Slope throughout the Holocene, implying that the climate thresholds evident in the historical records have seldom been crossed. In contrast, in areas of NW Alaska, tundra has burned regularly at 100-250 year intervals during the late Holocene. Tundra burning may cause sudden releases of the enormous amount of Arctic soil C. Charcoal particles from recent burns yielded 14C ages of AD 1952-2006. Thus the C consumed in recent fires may recover through vegetation succession. However, our results suggest that in areas that have burned multiple times in recent decades, old soil C is vulnerable to future fires.

  6. An MAT Program to Meet Future Needs.

    ERIC Educational Resources Information Center

    Shuman, R. Baird

    1981-01-01

    The history of Master of Arts in Teaching (MAT) programs is outlined. The areas in which teaching shortages continue to exist are identified and MAT programs are urged to work to alleviate these shortages. Teacher shortages for prison inmates, youngsters with reading and language handicaps, and ghetto children are described. (MLW)

  7. User's guide to the MATS data

    SciTech Connect

    Berman, S. )

    1990-08-01

    Data collected for the 37 Mesoscale Transport Studies (MATS) experiments are available on a single, double-sided, high-density (1.2MB), IBM-formatted, 5.25 in. floppy disk (MATS disk). Standard ASCII characters are used. This report discusses how to install this disk, symbols used, format of the ratio, and the sample experiment.

  8. Nonwoven glass fiber mat reinforces polyurethane adhesive

    NASA Technical Reports Server (NTRS)

    Roseland, L. M.

    1967-01-01

    Nonwoven glass fiber mat reinforces the adhesive properties of a polyurethane adhesive that fastens hardware to exterior surfaces of aluminum tanks. The mat is embedded in the uncured adhesive. It ensures good control of the bond line and increases the peel strength.

  9. Wintertime ecosystem respiration shifts tundra from carbon sink to carbon source at tundra warming experiment

    NASA Astrophysics Data System (ADS)

    Webb, E.; Schuur, E. A.; Natali, S.; Bracho, R.

    2013-12-01

    Northern latitude ecosystems play a significant role in the global carbon (C) budget due to the roughly 1700 Pg of C stored in permafrost soils. As high latitudes warm, previously frozen C is expected to decompose, thereby increasing CO2 fluxes to the atmosphere and potentially creating a positive feedback to climate warming. While warming has been shown to increase plant C uptake during the growing season, these seasonal C gains may be offset on an annual basis by ecosystem respiration (Reco) during the remaining seven months of the year. Here we present research from the Carbon in Permafrost Experimental Heating Research (CiPEHR) project, a tundra ecosystem warming experiment in interior Alaska. We partitioned the non-growing season into three segments: fall (October 1 until first snow), winter (snow-covered period until spring), and spring (snow depth less than 30cm until melt out). During fall, we measured net ecosystem exchange and Reco using a static flux chamber. In winter, we measured Reco using chamber measurements and soda lime. For spring, we modeled fluxes based on known relationships between snow depth and photosynthetic rate of arctic evergreen species. We found that ecosystem warming caused plants to photosynthesize later in fall and increased C uptake during spring but also enhanced respiration during the long winter. We combined these off-season estimates with measurements from growing season auto-chamber data and found that despite the C gained during the growing season, ecosystem warming resulted in net annual C loss for the two years measured. This annual C loss was dependent on the magnitude of wintertime Reco. Our results indicate that snow depth, soil temperature, and day of season are the major determinants of wintertime Reco. Some climate models predict that arctic ecosystems will experience warmer winters with more snow. Thus, despite increased plant productivity during the growing season, we document that increased wintertime temperatures

  10. Complex polar lipids of a hot spring cyanobacterial mat and its cultivated inhabitants

    NASA Technical Reports Server (NTRS)

    Ward, D. M.; Panke, S.; Kloppel, K. D.; Christ, R.; Fredrickson, H.

    1994-01-01

    The complex polar lipids of the hot spring cyanobacterial mat in the 50 to 55 degrees C region of Octopus Spring, Yellowstone National Park, and of thermophilic bacteria cultivated from this or similar habitats, were compared in an attempt to understand the microbial sources of the major lipid biomarkers in this community. Intact complex lipids were analyzed directly by fast atom bombardment mass spectrometry (FAB-MS), two-dimensional thin-layer chromatography (TLC), and combined TLC-FAB-MS. FAB-MS and TLC gave qualitatively similar results, suggesting that the mat contains major lipids most like those of the cyanobacterial isolate we studied, Synechococcus sp. strain Y-7c-s. These include monoglycosyl, diglycosyl, and sulfoquinosovyl diglycerides (MG, DG, and SQ, respectively) and phosphatidyl glycerol (PG). Though Chloroflexus aurantiacus also contains MG, DG, and PG, the fatty acid chain lengths of mat MGs, DGs, and PGs resemble more those of cyanobacterial than green nonsulfur bacterial lipids. FAB-MS spectra of the lipids of nonphototrophic bacterial isolates were distinctively different from those of the mat and phototrophic isolates. The lipids of these nonphototrophic isolates were not detected in the mat, but most could be detected when added to mat samples. The mat also contains major glycolipids and aminophospholipids of unknown structure and origin. FAB-MS and TLC did not always give quantitatively similar results. In particular, PG and SQ may give disproportionately high FAB-MS responses.

  11. Complex polar lipids of a hot spring cyanobacterial mat and its cultivated inhabitants.

    PubMed

    Ward, D M; Panke, S; Kloppel, K D; Christ, R; Fredrickson, H

    1994-09-01

    The complex polar lipids of the hot spring cyanobacterial mat in the 50 to 55 degrees C region of Octopus Spring, Yellowstone National Park, and of thermophilic bacteria cultivated from this or similar habitats, were compared in an attempt to understand the microbial sources of the major lipid biomarkers in this community. Intact complex lipids were analyzed directly by fast atom bombardment mass spectrometry (FAB-MS), two-dimensional thin-layer chromatography (TLC), and combined TLC-FAB-MS. FAB-MS and TLC gave qualitatively similar results, suggesting that the mat contains major lipids most like those of the cyanobacterial isolate we studied, Synechococcus sp. strain Y-7c-s. These include monoglycosyl, diglycosyl, and sulfoquinosovyl diglycerides (MG, DG, and SQ, respectively) and phosphatidyl glycerol (PG). Though Chloroflexus aurantiacus also contains MG, DG, and PG, the fatty acid chain lengths of mat MGs, DGs, and PGs resemble more those of cyanobacterial than green nonsulfur bacterial lipids. FAB-MS spectra of the lipids of nonphototrophic bacterial isolates were distinctively different from those of the mat and phototrophic isolates. The lipids of these nonphototrophic isolates were not detected in the mat, but most could be detected when added to mat samples. The mat also contains major glycolipids and aminophospholipids of unknown structure and origin. FAB-MS and TLC did not always give quantitatively similar results. In particular, PG and SQ may give disproportionately high FAB-MS responses.

  12. Investigation of VEGGIE Root Mat

    NASA Technical Reports Server (NTRS)

    Subbiah, Arun M.

    2013-01-01

    VEGGIE is a plant growth facility that utilizes the phenomenon of capillary action as its primary watering system. A cloth made of Meta Aramid fiber, known as Nomex is used to wick water up from a reservoir to the bottom of the plants roots. This root mat system is intended to be low maintenance with no moving parts and requires minimal crew interface time. Unfortunately, the water wicking rates are inconsistent throughout the plant life cycle, thus causing plants to die. Over-wicking of water occurs toward the beginning of the cycle, while under-wicking occurs toward the middle. This inconsistency of wicking has become a major issue, drastically inhibiting plant growth. The primary objective is to determine the root cause of the inconsistent wicking through experimental testing. Suspect causes for the capillary water column to break include: a vacuum effect due to a negative pressure gradient in the water reservoir, contamination of material due to minerals in water and back wash from plant fertilizer, induced air bubbles while using syringe refill method, and material limitations of Nomex's ability to absorb and retain water. Experimental testing will be conducted to systematically determine the cause of under and over-wicking. Pressure gages will be used to determine pressure drop during the course of the plant life cycle and during the water refill process. A debubbler device will be connected to a root mat in order to equalize pressure inside the reservoir. Moisture and evaporation tests will simultaneously be implemented to observe moisture content and wicking rates over the course of a plant cycle. Water retention tests will be performed using strips of Nomex to determine materials wicking rates, porosity, and absorptivity. Through these experimental tests, we will have a better understanding of material properties of Nomex, as well as determine the root cause of water column breakage. With consistent test results, a forward plan can be achieved to resolve

  13. Flat laminated microbial mat communities

    NASA Astrophysics Data System (ADS)

    Franks, Jonathan; Stolz, John F.

    2009-10-01

    Flat laminated microbial mats are complex microbial ecosystems that inhabit a wide range of environments (e.g., caves, iron springs, thermal springs and pools, salt marshes, hypersaline ponds and lagoons, methane and petroleum seeps, sea mounts, deep sea vents, arctic dry valleys). Their community structure is defined by physical (e.g., light quantity and quality, temperature, density and pressure) and chemical (e.g., oxygen, oxidation/reduction potential, salinity, pH, available electron acceptors and donors, chemical species) parameters as well as species interactions. The main primary producers may be photoautotrophs (e.g., cyanobacteria, purple phototrophs, green phototrophs) or chemolithoautophs (e.g., colorless sulfur oxidizing bacteria). Anaerobic phototrophy may predominate in organic rich environments that support high rates of respiration. These communities are dynamic systems exhibiting both spatial and temporal heterogeneity. They are characterized by steep gradients with microenvironments on the submillimeter scale. Diel oscillations in the physical-chemical profile (e.g., oxygen, hydrogen sulfide, pH) and species distribution are typical for phototroph-dominated communities. Flat laminated microbial mats are often sites of robust biogeochemical cycling. In addition to well-established modes of metabolism for phototrophy (oxygenic and non-oxygenic), respiration (both aerobic and anaerobic), and fermentation, novel energetic pathways have been discovered (e.g., nitrate reduction couple to the oxidation of ammonia, sulfur, or arsenite). The application of culture-independent techniques (e.g., 16S rRNA clonal libraries, metagenomics), continue to expand our understanding of species composition and metabolic functions of these complex ecosystems.

  14. Summertime N2O, CH4 and CO2 exchanges from a tundra marsh and an upland tundra in maritime Antarctica

    NASA Astrophysics Data System (ADS)

    Zhu, Renbin; Ma, Dawei; Xu, Hua

    2014-02-01

    This study provides the first concurrent measurements of nitrous oxide (N2O), methane (CH4) and carbon dioxide (CO2) fluxes from a tundra marsh and an upland tundra in maritime Antarctica over the summers of 2007/2008 and 2011/2012. Tundra N2O and CH4 fluxes showed large spatial variations depending on local hydrological regimes. N2O sinks generally occurred at waterlogged marsh sites (-3.0 to 27.5 μg N2O m-2 h-1) whereas relatively dry and mesic sites presented weak or strong N2O sources (2.2-41.6 μg N2O m-2 h-1). Upland tundra sites showed negligible N2O emissions due to low soil TN and NH4+-N contents. Dry/upland tundra sites showed weak to strong CH4 uptake (-4.5 to -85.8 μg CH4 m-2 h-1). The waterlogged sites showed weak to strong CH4 emissions (29.8 μg CH4 m-2 h-1-2.4 mg CH4 m-2 h-1). Both tundra marsh and upland tundra experienced a large net CO2 uptake with the greatest mean CO2 uptake rate (-92.1 mg CO2 m-2 h-1) at dry marsh sites. Mean ecosystem respiration (ER) ranged between 82.5 ± 13.2 and 174.9 ± 25.7 mg CO2 m-2 h-1 at all the sites, and showed a strong exponential correlation (P < 0.001) with 0-10 cm soil temperature. Gross photosynthesis (Pg) was more than two times higher in tundra marsh than in upland tundra due to the difference of vegetation coverage. N2O flux showed a strong negative correlation (P < 0.01) with 0-10 cm soil temperature at the marsh sites, and significant or weak positive correlations with total daily radiation (TDR) and sunlight time (ST). No significant correlation was obtained between CH4 fluxes and environmental variables at tundra marsh and upland tundra sites. There was a significant negative correlation (P < 0.01) between NEE and 0-10 cm mean soil temperature, total daily radiation. Our results indicated that the lowering of water table significantly increased N2O emissions and CH4 consumption, but decreased C loss from the tundra marsh. In the future, the combination of climate warming and frequent precipitation

  15. Morphology, release characteristics, and antimicrobial effect of nisin-loaded electrospun gelatin fiber mat.

    PubMed

    Dheraprasart, Chanuttaporn; Rengpipat, Sirirat; Supaphol, Pitt; Tattiyakul, Jirarat

    2009-11-01

    Gelatin electrospun (e-spun) fiber mats containing nisin were produced by electrostatic spinning of gelatin-nisin in 70% (vol/vol) acetic acid aqueous solutions. Varying nisin loading concentration (0 to 3% [wt/wt]) did not affect the fiber average diameter, whereas increasing gelatin concentration from 20 to 24% (wt/vol) caused an increase in the average diameter. All nisin-loaded gelatin e-spun fiber mats demonstrated inhibition against Lactobacillus plantarum TISTR 850. However, all fiber mats were fragile and easily dissolved in water. Cross-linking by saturated glutaraldehyde vapor at 37 degrees C for 5 min was done to strengthen the mat. Tensile strength, Young's modulus, and elongation of the cross-linked gelatin-nisin e-spun fiber mats varied in the range of 2.6 to 20.3 MPa, 163 to 966 MPa, and 1.7 to 5.9% , respectively. Cross-linking did not affect the mat's inhibition activity against L. plantarum TISTR 850. Nisin retention in cross-linked antimicrobial gelatin e-spun fiber mats was in the range of 1.0 to 1.22% . Increasing temperature caused an increase in nisin release, but increasing water activity did not cause a significant difference in nisin release over 50 h. After storage at 25 degrees C for 5 months, the antimicrobial gelatin e-spun fiber mat still showed inhibition against L. plantarum TISTR 850. The mats also inhibited the growth of Staphylococcus aureus and Listeria monocytogenes but not Salmonella Typhimurium. PMID:19903391

  16. Characterization of metal-binding bioflocculants produced by the cyanobacterial component of mixed microbial mats.

    PubMed Central

    Bender, J; Rodriguez-Eaton, S; Ekanemesang, U M; Phillips, P

    1994-01-01

    Mixed-species microbial mats that were dominated by the cyanobacterium Oscillatoria sp. and contained heterotrophic and purple autotrophic bacteria were constructed for specific bioremediation applications. When the mats were challenged with metals, production and secretion of metal-binding extracellular polysaccharide bioflocculants were observed. The concentration of these negatively charged polysaccharides was correlated with the removal of manganese from the water column beneath a surface microbial mat. Bioflocculants from an Oscillatoria sp. that was isolated from the mat were collected and concentrated for characterization. A chromatographic analysis revealed a heterogeneous population of polysaccharides with respect to charge density and molecular size. The subpopulation of polysaccharides which exhibited the highest level of flocculating activity was polyanionic and had a molecular weight of more than 200,000. A glycosyl analysis of the bioflocculants revealed the presence of galacturonic acid (2.2%) and glucuronic acid (1.86%). The presence of these components, which were negatively charged at the pH levels generated by the mats during photosynthesis (pH > 7.5), may account for the metal-binding properties of the mats. PMID:8074512

  17. Winter precipitation and snow accumulation drive the methane sink or source strength of Arctic tussock tundra.

    PubMed

    Blanc-Betes, Elena; Welker, Jeffrey M; Sturchio, Neil C; Chanton, Jeffrey P; Gonzalez-Meler, Miquel A

    2016-08-01

    Arctic winter precipitation is projected to increase with global warming, but some areas will experience decreases in snow accumulation. Although Arctic CH4 emissions may represent a significant climate forcing feedback, long-term impacts of changes in snow accumulation on CH4 fluxes remain uncertain. We measured ecosystem CH4 fluxes and soil CH4 and CO2 concentrations and (13) C composition to investigate the metabolic pathways and transport mechanisms driving moist acidic tundra CH4 flux over the growing season (Jun-Aug) after 18 years of experimental snow depth increases and decreases. Deeper snow increased soil wetness and warming, reducing soil %O2 levels and increasing thaw depth. Soil moisture, through changes in soil %O2 saturation, determined predominance of methanotrophy or methanogenesis, with soil temperature regulating the ecosystem CH4 sink or source strength. Reduced snow (RS) increased the fraction of oxidized CH4 (Fox) by 75-120% compared to Ambient, switching the system from a small source to a net CH4 sink (21 ± 2 and -31 ± 1 mg CH4  m(-2)  season(-1) at Ambient and RS). Deeper snow reduced Fox by 35-40% and 90-100% in medium- (MS) and high- (HS) snow additions relative to Ambient, contributing to increasing the CH4 source strength of moist acidic tundra (464 ± 15 and 3561 ± 97 mg CH4  m(-2)  season(-1) at MS and HS). Decreases in Fox with deeper snow were partly due to increases in plant-mediated CH4 transport associated with the expansion of tall graminoids. Deeper snow enhanced CH4 production within newly thawed soils, responding mainly to soil warming rather than to increases in acetate fermentation expected from thaw-induced increases in SOC availability. Our results suggest that increased winter precipitation will increase the CH4 source strength of Arctic tundra, but the resulting positive feedback on climate change will depend on the balance between areas with more or less snow accumulation than they are currently

  18. Winter precipitation and snow accumulation drive the methane sink or source strength of Arctic tussock tundra.

    PubMed

    Blanc-Betes, Elena; Welker, Jeffrey M; Sturchio, Neil C; Chanton, Jeffrey P; Gonzalez-Meler, Miquel A

    2016-08-01

    Arctic winter precipitation is projected to increase with global warming, but some areas will experience decreases in snow accumulation. Although Arctic CH4 emissions may represent a significant climate forcing feedback, long-term impacts of changes in snow accumulation on CH4 fluxes remain uncertain. We measured ecosystem CH4 fluxes and soil CH4 and CO2 concentrations and (13) C composition to investigate the metabolic pathways and transport mechanisms driving moist acidic tundra CH4 flux over the growing season (Jun-Aug) after 18 years of experimental snow depth increases and decreases. Deeper snow increased soil wetness and warming, reducing soil %O2 levels and increasing thaw depth. Soil moisture, through changes in soil %O2 saturation, determined predominance of methanotrophy or methanogenesis, with soil temperature regulating the ecosystem CH4 sink or source strength. Reduced snow (RS) increased the fraction of oxidized CH4 (Fox) by 75-120% compared to Ambient, switching the system from a small source to a net CH4 sink (21 ± 2 and -31 ± 1 mg CH4  m(-2)  season(-1) at Ambient and RS). Deeper snow reduced Fox by 35-40% and 90-100% in medium- (MS) and high- (HS) snow additions relative to Ambient, contributing to increasing the CH4 source strength of moist acidic tundra (464 ± 15 and 3561 ± 97 mg CH4  m(-2)  season(-1) at MS and HS). Decreases in Fox with deeper snow were partly due to increases in plant-mediated CH4 transport associated with the expansion of tall graminoids. Deeper snow enhanced CH4 production within newly thawed soils, responding mainly to soil warming rather than to increases in acetate fermentation expected from thaw-induced increases in SOC availability. Our results suggest that increased winter precipitation will increase the CH4 source strength of Arctic tundra, but the resulting positive feedback on climate change will depend on the balance between areas with more or less snow accumulation than they are currently

  19. Diversification of Nitrogen Sources in Various Tundra Vegetation Types in the High Arctic.

    PubMed

    Skrzypek, Grzegorz; Wojtuń, Bronisław; Richter, Dorota; Jakubas, Dariusz; Wojczulanis-Jakubas, Katarzyna; Samecka-Cymerman, Aleksandra

    2015-01-01

    Low nitrogen availability in the high Arctic represents a major constraint for plant growth, which limits the tundra capacity for carbon retention and determines tundra vegetation types. The limited terrestrial nitrogen (N) pool in the tundra is augmented significantly by nesting seabirds, such as the planktivorous Little Auk (Alle alle). Therefore, N delivered by these birds may significantly influence the N cycling in the tundra locally and the carbon budget more globally. Moreover, should these birds experience substantial negative environmental pressure associated with climate change, this will adversely influence the tundra N-budget. Hence, assessment of bird-originated N-input to the tundra is important for understanding biological cycles in polar regions. This study analyzed the stable nitrogen composition of the three main N-sources in the High Arctic and in numerous plants that access different N-pools in ten tundra vegetation types in an experimental catchment in Hornsund (Svalbard). The percentage of the total tundra N-pool provided by birds, ranged from 0-21% in Patterned-ground tundra to 100% in Ornithocoprophilous tundra. The total N-pool utilized by tundra plants in the studied catchment was built in 36% by birds, 38% by atmospheric deposition, and 26% by atmospheric N2-fixation. The stable nitrogen isotope mixing mass balance, in contrast to direct methods that measure actual deposition, indicates the ratio between the actual N-loads acquired by plants from different N-sources. Our results enhance our understanding of the importance of different N-sources in the Arctic tundra and the used methodological approach can be applied elsewhere.

  20. Diversification of Nitrogen Sources in Various Tundra Vegetation Types in the High Arctic

    PubMed Central

    Skrzypek, Grzegorz; Wojtuń, Bronisław; Richter, Dorota; Jakubas, Dariusz; Wojczulanis-Jakubas, Katarzyna; Samecka-Cymerman, Aleksandra

    2015-01-01

    Low nitrogen availability in the high Arctic represents a major constraint for plant growth, which limits the tundra capacity for carbon retention and determines tundra vegetation types. The limited terrestrial nitrogen (N) pool in the tundra is augmented significantly by nesting seabirds, such as the planktivorous Little Auk (Alle alle). Therefore, N delivered by these birds may significantly influence the N cycling in the tundra locally and the carbon budget more globally. Moreover, should these birds experience substantial negative environmental pressure associated with climate change, this will adversely influence the tundra N-budget. Hence, assessment of bird-originated N-input to the tundra is important for understanding biological cycles in polar regions. This study analyzed the stable nitrogen composition of the three main N-sources in the High Arctic and in numerous plants that access different N-pools in ten tundra vegetation types in an experimental catchment in Hornsund (Svalbard). The percentage of the total tundra N-pool provided by birds, ranged from 0–21% in Patterned-ground tundra to 100% in Ornithocoprophilous tundra. The total N-pool utilized by tundra plants in the studied catchment was built in 36% by birds, 38% by atmospheric deposition, and 26% by atmospheric N2-fixation. The stable nitrogen isotope mixing mass balance, in contrast to direct methods that measure actual deposition, indicates the ratio between the actual N-loads acquired by plants from different N-sources. Our results enhance our understanding of the importance of different N-sources in the Arctic tundra and the used methodological approach can be applied elsewhere. PMID:26376204

  1. Seasonal dynamics of previously unknown fungal lineages in tundra soils.

    PubMed

    Schadt, Christopher W; Martin, Andrew P; Lipson, David A; Schmidt, Steven K

    2003-09-01

    The finding that microbial communities are active under snow has changed the estimated global rates of biogeochemical processes beneath seasonal snow packs. We used microbiological and molecular techniques to elucidate the phylogenetic composition of undersnow microbial communities in Colorado, the United States. Here, we show that tundra soil microbial biomass reaches its annual peak under snow, and that fungi account for most of the biomass. Phylogenetic analysis of tundra soil fungi revealed a high diversity of fungi and three novel clades that constitute major new groups of fungi (divergent at the subphylum or class level). An abundance of previously unknown fungi that are active beneath the snow substantially broadens our understanding of both the diversity and biogeochemical functioning of fungi in cold environments.

  2. Natural causes of the tundra-taiga boundary.

    PubMed

    Sveinbjörnsson, Bjartmar; Hofgaard, Annika; Lloyd, Andrea

    2002-08-01

    The tundra-taiga interface is characterized by a change in tree cover or density, tree size and shape, tree growth, and reproduction. Generally, trees get denser, taller, and less damaged as one moves from the tundra into the taiga proper. The environmental covariates and possible mechanisms resulting in these patterns are addressed in the paper. Low seed rain density, lack of safe sites caused by microclimatic variation, low surface substrate moisture, and low soil nutrient availability may limit the density of the tree species. Tree growth may be limited by a short growing season and further diminished, by shoot and root damage reducing carbon and nutrient stores as well as by reducing carbon and nutrient uptake capacities. Positive and negative feedbacks of tree density on tree growth exist at treeline. Increased tree density leads to increased air temperature and decreased wind damage, but also to lower soil temperature, reduced nutrient availability, and greater nutrient competition.

  3. Apparent contradiction: psychrotolerant bacteria from hydrocarbon-contaminated arctic tundra soils that degrade diterpenoids synthesized by trees.

    PubMed

    Yu, Z; Stewart, G R; Mohn, W W

    2000-12-01

    Resin acids are tricyclic terpenoids occurring naturally in trees. We investigated the occurrence of resin acid-degrading bacteria on the Arctic tundra near the northern coast of Ellesmere Island (82 degrees N, 62 degrees W). According to most-probable-number assays, resin acid degraders were abundant (10(3) to 10(4) propagules/g of soil) in hydrocarbon-contaminated soils, but they were undetectable (<3 propagules/g of soil) in pristine soils from the nearby tundra. Plate counts indicated that the contaminated and the pristine soils had similar populations of heterotrophs (10(6) to 10(7) propagules/g of soil). Eleven resin acid-degrading bacteria belonging to four phylogenetically distinct groups were enriched and isolated from the contaminated soils, and representative isolates of each group were further characterized. Strains DhA-91, IpA-92, and IpA-93 are members of the genus Pseudomonas. Strain DhA-95 is a member of the genus Sphingomonas. All four strains are psychrotolerant, with growth temperature ranges of 4 degrees C to 30 degrees C (DhA-91 and DhA-95) or 4 degrees C to 22 degrees C (IpA-92 and IpA-93) and with optimum temperatures of 15 to 22 degrees C. Strains DhA-91 and DhA-95 grew on the abietanes, dehydroabietic and abietic acids, but not on the pimaranes, isopimaric and pimaric acids. Strains IpA-92 and IpA-93 grew on the pimaranes but not the abietanes. All four strains grew on either aliphatic or aromatic hydrocarbons, which is unusual for described resin acid degraders. Eleven mesophilic resin acid degraders did not use hydrocarbons, with the exception of two Mycobacterium sp. strains that used aliphatic hydrocarbons. We conclude that hydrocarbon contamination in Arctic tundra soil indirectly selected for resin acid degraders, selecting for hydrocarbon degraders that coincidentally use resin acids. Psychrotolerant resin acid degraders are likely important in the global carbon cycle and may have applications in biotreatment of pulp and paper mill

  4. Apparent Contradiction: Psychrotolerant Bacteria from Hydrocarbon-Contaminated Arctic Tundra Soils That Degrade Diterpenoids Synthesized by Trees

    PubMed Central

    Yu, Zhongtang; Stewart, Gordon R.; Mohn, William W.

    2000-01-01

    Resin acids are tricyclic terpenoids occurring naturally in trees. We investigated the occurrence of resin acid-degrading bacteria on the Arctic tundra near the northern coast of Ellesmere Island (82°N, 62°W). According to most-probable-number assays, resin acid degraders were abundant (103 to 104 propagules/g of soil) in hydrocarbon-contaminated soils, but they were undetectable (<3 propagules/g of soil) in pristine soils from the nearby tundra. Plate counts indicated that the contaminated and the pristine soils had similar populations of heterotrophs (106 to 107 propagules/g of soil). Eleven resin acid-degrading bacteria belonging to four phylogenetically distinct groups were enriched and isolated from the contaminated soils, and representative isolates of each group were further characterized. Strains DhA-91, IpA-92, and IpA-93 are members of the genus Pseudomonas. Strain DhA-95 is a member of the genus Sphingomonas. All four strains are psychrotolerant, with growth temperature ranges of 4°C to 30°C (DhA-91 and DhA-95) or 4°C to 22°C (IpA-92 and IpA-93) and with optimum temperatures of 15 to 22°C. Strains DhA-91 and DhA-95 grew on the abietanes, dehydroabietic and abietic acids, but not on the pimaranes, isopimaric and pimaric acids. Strains IpA-92 and IpA-93 grew on the pimaranes but not the abietanes. All four strains grew on either aliphatic or aromatic hydrocarbons, which is unusual for described resin acid degraders. Eleven mesophilic resin acid degraders did not use hydrocarbons, with the exception of two Mycobacterium sp. strains that used aliphatic hydrocarbons. We conclude that hydrocarbon contamination in Arctic tundra soil indirectly selected for resin acid degraders, selecting for hydrocarbon degraders that coincidentally use resin acids. Psychrotolerant resin acid degraders are likely important in the global carbon cycle and may have applications in biotreatment of pulp and paper mill effluents. PMID:11097882

  5. Cold season emissions dominate the Arctic tundra methane budget.

    PubMed

    Zona, Donatella; Gioli, Beniamino; Commane, Róisín; Lindaas, Jakob; Wofsy, Steven C; Miller, Charles E; Dinardo, Steven J; Dengel, Sigrid; Sweeney, Colm; Karion, Anna; Chang, Rachel Y-W; Henderson, John M; Murphy, Patrick C; Goodrich, Jordan P; Moreaux, Virginie; Liljedahl, Anna; Watts, Jennifer D; Kimball, John S; Lipson, David A; Oechel, Walter C

    2016-01-01

    Arctic terrestrial ecosystems are major global sources of methane (CH4); hence, it is important to understand the seasonal and climatic controls on CH4 emissions from these systems. Here, we report year-round CH4 emissions from Alaskan Arctic tundra eddy flux sites and regional fluxes derived from aircraft data. We find that emissions during the cold season (September to May) account for ≥ 50% of the annual CH4 flux, with the highest emissions from noninundated upland tundra. A major fraction of cold season emissions occur during the "zero curtain" period, when subsurface soil temperatures are poised near 0 °C. The zero curtain may persist longer than the growing season, and CH4 emissions are enhanced when the duration is extended by a deep thawed layer as can occur with thick snow cover. Regional scale fluxes of CH4 derived from aircraft data demonstrate the large spatial extent of late season CH4 emissions. Scaled to the circumpolar Arctic, cold season fluxes from tundra total 12 ± 5 (95% confidence interval) Tg CH4 y(-1), ∼ 25% of global emissions from extratropical wetlands, or ∼ 6% of total global wetland methane emissions. The dominance of late-season emissions, sensitivity to soil environmental conditions, and importance of dry tundra are not currently simulated in most global climate models. Because Arctic warming disproportionally impacts the cold season, our results suggest that higher cold-season CH4 emissions will result from observed and predicted increases in snow thickness, active layer depth, and soil temperature, representing important positive feedbacks on climate warming.

  6. Cold season emissions dominate the Arctic tundra methane budget

    PubMed Central

    Zona, Donatella; Gioli, Beniamino; Lindaas, Jakob; Wofsy, Steven C.; Miller, Charles E.; Dinardo, Steven J.; Dengel, Sigrid; Sweeney, Colm; Karion, Anna; Chang, Rachel Y.-W.; Henderson, John M.; Murphy, Patrick C.; Goodrich, Jordan P.; Moreaux, Virginie; Liljedahl, Anna; Watts, Jennifer D.; Kimball, John S.; Lipson, David A.; Oechel, Walter C.

    2016-01-01

    Arctic terrestrial ecosystems are major global sources of methane (CH4); hence, it is important to understand the seasonal and climatic controls on CH4 emissions from these systems. Here, we report year-round CH4 emissions from Alaskan Arctic tundra eddy flux sites and regional fluxes derived from aircraft data. We find that emissions during the cold season (September to May) account for ≥50% of the annual CH4 flux, with the highest emissions from noninundated upland tundra. A major fraction of cold season emissions occur during the “zero curtain” period, when subsurface soil temperatures are poised near 0 °C. The zero curtain may persist longer than the growing season, and CH4 emissions are enhanced when the duration is extended by a deep thawed layer as can occur with thick snow cover. Regional scale fluxes of CH4 derived from aircraft data demonstrate the large spatial extent of late season CH4 emissions. Scaled to the circumpolar Arctic, cold season fluxes from tundra total 12 ± 5 (95% confidence interval) Tg CH4 y−1, ∼25% of global emissions from extratropical wetlands, or ∼6% of total global wetland methane emissions. The dominance of late-season emissions, sensitivity to soil environmental conditions, and importance of dry tundra are not currently simulated in most global climate models. Because Arctic warming disproportionally impacts the cold season, our results suggest that higher cold-season CH4 emissions will result from observed and predicted increases in snow thickness, active layer depth, and soil temperature, representing important positive feedbacks on climate warming. PMID:26699476

  7. Impact of permafrost thaw on Arctic tundra pond geochemistry

    NASA Astrophysics Data System (ADS)

    Reyes, F.; Lougheed, V.

    2012-12-01

    Increasing evidence indicates the arctic tundra is changing physically, biologically, and chemically due to climate warming. With a warmer climate, permafrost is expected to thaw and influence the chemistry of arctic aquatic ecosystems. However, knowledge is limited on how geochemistry of arctic tundra pond ecosystems will respond. By re-sampling historical IBP ponds in Barrow, AK first sampled in the 1970s, previous studies have shown an increase in water temperature, nutrients and algal biomass through time. Results from this study indicate an increase of Ca, Mg, and Na in the water column, and a decrease in pH relative to the 1970s, suggesting an increased rate and magnitude of carbonate and Mg release. Seasonal trends were also examined to understand what processes, such as mineral weathering, peat decomposition and evaporation, were currently most influential in determining pond geochemistry. An increase in Ca/Na molar ratios, and carbonate and magnesium concentrations indicates that these tundra ponds are experiencing greater carbonate weathering compared to the 1970s and the rate of carbonate weathering increases in ponds as the summer progresses. However, increasing dissolved organic carbon (DOC) concentrations originating from peat decomposition are likely neutralizing additional inputs of carbonate, causing pond pH to decrease and exacerbating mineral weathering. A strong positive relationship between element concentrations and active layer pond thaw depth suggests that the origin of these additional solutes is likely from permafrost thaw. Active layer thaw depth has increased substantially over the past 40 years in the IBP ponds. Chloride/Bromide molar ratios and Deuterium/ 18-Oxygen isotope ratios will be used to determine the degree of evaporation occurring in tundra ponds. Ultimately, this study provides evidence for how geochemistry can identify the sources of chemical inputs to Arctic ponds affected by climate change and permafrost thaw.

  8. Analysis of state of vehicular scars on Arctic Tundra, Alaska

    NASA Technical Reports Server (NTRS)

    Lathram, E. H.

    1974-01-01

    Identification on ERTS images of severe vehicular scars in the northern Alaska tundra suggests that, if such scars are of an intensity or have spread to a dimension such that they can be resolved by ERTS sensors (20 meters), they can be identified and their state monitored by the use of ERTS images. Field review of the state of vehicular scars in the Umiat area indicates that all are revegetating at varying rates and are approaching a stable state.

  9. The 1977 tundra fire at Kokolik River, Alaska

    NASA Technical Reports Server (NTRS)

    Hall, D.; Brown, J.; Johnson, L.

    1981-01-01

    During the summer of 1977, fire totaled 44 sq km of tundra vegetation according to measurements using LANDSAT imagery. Based on the experience gained from analysis of this fire using ground observations, satellite imagery, and topographic maps, it appears that natural drainages form effective fire breaks on the subdued relief of the Arctic coastal plain and northern foothills. It is confirmed that the intensity of the fire is related to vegetation type and to the moisture content of the organic rich soils.

  10. Cold season emissions dominate the Arctic tundra methane budget.

    PubMed

    Zona, Donatella; Gioli, Beniamino; Commane, Róisín; Lindaas, Jakob; Wofsy, Steven C; Miller, Charles E; Dinardo, Steven J; Dengel, Sigrid; Sweeney, Colm; Karion, Anna; Chang, Rachel Y-W; Henderson, John M; Murphy, Patrick C; Goodrich, Jordan P; Moreaux, Virginie; Liljedahl, Anna; Watts, Jennifer D; Kimball, John S; Lipson, David A; Oechel, Walter C

    2016-01-01

    Arctic terrestrial ecosystems are major global sources of methane (CH4); hence, it is important to understand the seasonal and climatic controls on CH4 emissions from these systems. Here, we report year-round CH4 emissions from Alaskan Arctic tundra eddy flux sites and regional fluxes derived from aircraft data. We find that emissions during the cold season (September to May) account for ≥ 50% of the annual CH4 flux, with the highest emissions from noninundated upland tundra. A major fraction of cold season emissions occur during the "zero curtain" period, when subsurface soil temperatures are poised near 0 °C. The zero curtain may persist longer than the growing season, and CH4 emissions are enhanced when the duration is extended by a deep thawed layer as can occur with thick snow cover. Regional scale fluxes of CH4 derived from aircraft data demonstrate the large spatial extent of late season CH4 emissions. Scaled to the circumpolar Arctic, cold season fluxes from tundra total 12 ± 5 (95% confidence interval) Tg CH4 y(-1), ∼ 25% of global emissions from extratropical wetlands, or ∼ 6% of total global wetland methane emissions. The dominance of late-season emissions, sensitivity to soil environmental conditions, and importance of dry tundra are not currently simulated in most global climate models. Because Arctic warming disproportionally impacts the cold season, our results suggest that higher cold-season CH4 emissions will result from observed and predicted increases in snow thickness, active layer depth, and soil temperature, representing important positive feedbacks on climate warming. PMID:26699476

  11. Cold season emissions dominate the Arctic tundra methane budget

    NASA Astrophysics Data System (ADS)

    Zona, Donatella; Gioli, Beniamino; Commane, Róisín; Lindaas, Jakob; Wofsy, Steven C.; Miller, Charles E.; Dinardo, Steven J.; Dengel, Sigrid; Sweeney, Colm; Karion, Anna; Chang, Rachel Y.-W.; Henderson, John M.; Murphy, Patrick C.; Goodrich, Jordan P.; Moreaux, Virginie; Liljedahl, Anna; Watts, Jennifer D.; Kimball, John S.; Lipson, David A.; Oechel, Walter C.

    2016-01-01

    Arctic terrestrial ecosystems are major global sources of methane (CH4); hence, it is important to understand the seasonal and climatic controls on CH4 emissions from these systems. Here, we report year-round CH4 emissions from Alaskan Arctic tundra eddy flux sites and regional fluxes derived from aircraft data. We find that emissions during the cold season (September to May) account for ≥50% of the annual CH4 flux, with the highest emissions from noninundated upland tundra. A major fraction of cold season emissions occur during the "zero curtain" period, when subsurface soil temperatures are poised near 0 °C. The zero curtain may persist longer than the growing season, and CH4 emissions are enhanced when the duration is extended by a deep thawed layer as can occur with thick snow cover. Regional scale fluxes of CH4 derived from aircraft data demonstrate the large spatial extent of late season CH4 emissions. Scaled to the circumpolar Arctic, cold season fluxes from tundra total 12 ± 5 (95% confidence interval) Tg CH4 y-1, ∼25% of global emissions from extratropical wetlands, or ∼6% of total global wetland methane emissions. The dominance of late-season emissions, sensitivity to soil environmental conditions, and importance of dry tundra are not currently simulated in most global climate models. Because Arctic warming disproportionally impacts the cold season, our results suggest that higher cold-season CH4 emissions will result from observed and predicted increases in snow thickness, active layer depth, and soil temperature, representing important positive feedbacks on climate warming.

  12. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats.

    PubMed

    Lee, Jackson Z; Burow, Luke C; Woebken, Dagmar; Everroad, R Craig; Kubo, Mike D; Spormann, Alfred M; Weber, Peter K; Pett-Ridge, Jennifer; Bebout, Brad M; Hoehler, Tori M

    2014-01-01

    Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB). However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico-permanently submerged Microcoleus microbial mat (GN-S), and intertidal Lyngbya microbial mat (GN-I)-were used in microcosm diel manipulation experiments with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), molybdate, ammonium addition, and physical disruption to understand the processes responsible for hydrogen cycling between mat microbes. Across microcosms, H2 production occurred under dark anoxic conditions with simultaneous production of a suite of organic acids. H2 production was not significantly affected by inhibition of nitrogen fixation, but rather appears to result from constitutive fermentation of photosynthetic storage products by oxygenic phototrophs. Comparison to accumulated glycogen and to CO2 flux indicated that, in the GN-I mat, fermentation released almost all of the carbon fixed via photosynthesis during the preceding day, primarily as organic acids. Across mats, although oxygenic and anoxygenic phototrophs were detected, cyanobacterial [NiFe]-hydrogenase transcripts predominated. Molybdate inhibition experiments indicated that SRBs from a wide distribution of DsrA phylotypes were responsible for H2 consumption. Incubation with (13)C-acetate and NanoSIMS (secondary ion mass-spectrometry) indicated higher uptake in both Chloroflexi and SRBs relative to other filamentous bacteria. These manipulations and diel incubations confirm that Cyanobacteria were the main fermenters in Guerrero Negro mats and that the net flux of nighttime fermentation byproducts (not only hydrogen) was largely regulated by the interplay between Cyanobacteria, SRBs, and Chloroflexi.

  13. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats.

    PubMed

    Lee, Jackson Z; Burow, Luke C; Woebken, Dagmar; Everroad, R Craig; Kubo, Mike D; Spormann, Alfred M; Weber, Peter K; Pett-Ridge, Jennifer; Bebout, Brad M; Hoehler, Tori M

    2014-01-01

    Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB). However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico-permanently submerged Microcoleus microbial mat (GN-S), and intertidal Lyngbya microbial mat (GN-I)-were used in microcosm diel manipulation experiments with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), molybdate, ammonium addition, and physical disruption to understand the processes responsible for hydrogen cycling between mat microbes. Across microcosms, H2 production occurred under dark anoxic conditions with simultaneous production of a suite of organic acids. H2 production was not significantly affected by inhibition of nitrogen fixation, but rather appears to result from constitutive fermentation of photosynthetic storage products by oxygenic phototrophs. Comparison to accumulated glycogen and to CO2 flux indicated that, in the GN-I mat, fermentation released almost all of the carbon fixed via photosynthesis during the preceding day, primarily as organic acids. Across mats, although oxygenic and anoxygenic phototrophs were detected, cyanobacterial [NiFe]-hydrogenase transcripts predominated. Molybdate inhibition experiments indicated that SRBs from a wide distribution of DsrA phylotypes were responsible for H2 consumption. Incubation with (13)C-acetate and NanoSIMS (secondary ion mass-spectrometry) indicated higher uptake in both Chloroflexi and SRBs relative to other filamentous bacteria. These manipulations and diel incubations confirm that Cyanobacteria were the main fermenters in Guerrero Negro mats and that the net flux of nighttime fermentation byproducts (not only hydrogen) was largely regulated by the interplay between Cyanobacteria, SRBs, and Chloroflexi. PMID:24616716

  14. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats

    PubMed Central

    Lee, Jackson Z.; Burow, Luke C.; Woebken, Dagmar; Everroad, R. Craig; Kubo, Mike D.; Spormann, Alfred M.; Weber, Peter K.; Pett-Ridge, Jennifer; Bebout, Brad M.; Hoehler, Tori M.

    2013-01-01

    Past studies of hydrogen cycling in hypersaline microbial mats have shown an active nighttime cycle, with production largely from Cyanobacteria and consumption from sulfate-reducing bacteria (SRB). However, the mechanisms and magnitude of hydrogen cycling have not been extensively studied. Two mats types near Guerrero Negro, Mexico—permanently submerged Microcoleus microbial mat (GN-S), and intertidal Lyngbya microbial mat (GN-I)—were used in microcosm diel manipulation experiments with 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), molybdate, ammonium addition, and physical disruption to understand the processes responsible for hydrogen cycling between mat microbes. Across microcosms, H2 production occurred under dark anoxic conditions with simultaneous production of a suite of organic acids. H2 production was not significantly affected by inhibition of nitrogen fixation, but rather appears to result from constitutive fermentation of photosynthetic storage products by oxygenic phototrophs. Comparison to accumulated glycogen and to CO2 flux indicated that, in the GN-I mat, fermentation released almost all of the carbon fixed via photosynthesis during the preceding day, primarily as organic acids. Across mats, although oxygenic and anoxygenic phototrophs were detected, cyanobacterial [NiFe]-hydrogenase transcripts predominated. Molybdate inhibition experiments indicated that SRBs from a wide distribution of DsrA phylotypes were responsible for H2 consumption. Incubation with 13C-acetate and NanoSIMS (secondary ion mass-spectrometry) indicated higher uptake in both Chloroflexi and SRBs relative to other filamentous bacteria. These manipulations and diel incubations confirm that Cyanobacteria were the main fermenters in Guerrero Negro mats and that the net flux of nighttime fermentation byproducts (not only hydrogen) was largely regulated by the interplay between Cyanobacteria, SRBs, and Chloroflexi. PMID:24616716

  15. Identification of unrecognized tundra fire events on the north slope of Alaska

    USGS Publications Warehouse

    Jones, Benjamin M.; Breen, Amy L.; Gaglioti, Benjamin V.; Mann, Daniel H.; Rocha, Adrian V.; Grosse, Guido; Arp, Christopher D.; Kunz, Michael L.; Walker, Donald A.

    2013-01-01

    Characteristics of the natural fire regime are poorly resolved in the Arctic, even though fire may play an important role cycling carbon stored in tundra vegetation and soils to the atmosphere. In the course of studying vegetation and permafrost-terrain characteristics along a chronosequence of tundra burn sites from AD 1977, 1993, and 2007 on the North Slope of Alaska, we discovered two large, previously unrecognized tundra fires. The Meade River fire burned an estimated 500 km2 and the Ketik River fire burned an estimated 1200 km2. Based on radiocarbon dating of charred twigs, analysis of historic aerial photography, and regional climate proxy data, these fires likely occurred between AD 1880 and 1920. Together, these events double the estimated burn area on the North Slope of Alaska over the last ~100 to 130 years. Assessment of vegetation succession along the century-scale chronosequence of tundra fire disturbances demonstrates for the first time on the North Slope of Alaska that tundra fires can facilitate the invasion of tundra by shrubs. Degradation of ice-rich permafrost was also evident at the fire sites and likely aided in the presumed changes of the tundra vegetation postfire. Other previously unrecognized tundra fire events likely exist in Alaska and other Arctic regions and identification of these sites is important for better understanding disturbance regimes and carbon cycling in Arctic tundra.

  16. Temporal changes in soil bacterial diversity and humic substances degradation in subarctic tundra soil.

    PubMed

    Park, Ha Ju; Chae, Namyi; Sul, Woo Jun; Lee, Bang Yong; Lee, Yoo Kyung; Kim, Dockyu

    2015-04-01

    Humic substances (HS), primarily humic acids (HA) and fulvic acids (FA), are the largest constituent of soil organic matter. In microcosm systems with subarctic HS-rich tundra soil (site AK 1-75; approximately 5.6 °C during the thawing period) from Council, Alaska, the HA content significantly decreased to 48% after a 99-day incubation at 5 °C as part of a biologically mediated process. Accordingly, levels of FA, a putative byproduct of HA degradation, consistently increased to 172% during an identical incubation process. Culture-independent microbial community analysis showed that during the microcosm experiments, the relative abundance of phyla Proteobacteria (bacteria) and Euryarchaeota (archaea) largely increased, indicating their involvement in HS degradation. When the indigenous bacteria in AK 1-75 were enriched in an artificial mineral medium spiked with HA, the changes in relative abundance were most conspicuous in Proteobacteria (from 60.2 to 79.0%), specifically Betaproteobacteria-related bacteria. One hundred twenty-two HA-degrading bacterial strains, primarily from the genera Paenibacillus (phylum Firmicutes) and Pseudomonas (class Gammaproteobacteria), were cultivated from AK 1-75 and nearby sites. Through culture-dependent analysis with these bacterial isolates, we observed increasing HS-degradation rates in parallel with rising temperatures in a range of 0 °C to 20 °C, with the most notable increase occurring at 8 °C compared to 6 °C. Our results indicate that, although microbial-mediated HS degradation occurs at temperature as low as 5 °C in tundra ecosystems, increasing soil temperature caused by global climate change could enhance HS degradation rates. Extending the thawing period could also increase degradation activity, thereby directly affecting nearby microbial communities and rhizosphere environments.

  17. Emissions of biogenic sulfur gases from Alaskan tundra

    NASA Technical Reports Server (NTRS)

    Hines, Mark E.; Morrison, Michael C.

    1992-01-01

    Results of sulfur emission measurements made in freshwater and marine wetlands in Alaskan tundra during the Arctic Boundary Layer Expedition 2A (ABLE 3A) in July 1988 are presented. The data indicate that this type of tundra emits very small amounts of gaseous sulfur and, when extrapolated globally, accounts for a very small percentage of the global flux of biogenic sulfur to the atmosphere. Sulfur emissions from marine sites are up to 20-fold greater than fluxes from freshwater habitats and are dominated by dimethyl sulfide (DMS). Highest emissions, with a mean of 6.0 nmol/sq m/h, occurred in water-saturated wet meadow areas. In drier upland tundra sites, highest fluxes occurred in areas inhabited by mixed vegetation and labrador tea at 3.0 nmol/sq m/h and lowest fluxes were from lichen-dominated areas at 0.9 nmol/sq m/h. DMS was the dominant gas emitted from all these sites. Emissions of DMS were highest from intertidal soils inhabited by Carex subspathacea.

  18. Advancing the long view of ecological change in tundra systems

    PubMed Central

    Post, Eric; Høye, Toke T.

    2013-01-01

    Despite uncertainties related to sustained funding, ideological rivalries and the turnover of research personnel, long-term studies and studies espousing a long-term perspective in ecology have a history of contributing landmark insights into fundamental topics, such as population- and community dynamics, species interactions and ecosystem function. They also have the potential to reveal surprises related to unforeseen events and non-stationary dynamics that unfold over the course of ongoing observation and experimentation. The unprecedented rate and magnitude of current and expected abiotic changes in tundra environments calls for a synthetic overview of the scope of ecological responses these changes have elicited. In this special issue, we present a series of contributions that advance the long view of ecological change in tundra systems, either through sustained long-term research, or through retrospective or prospective modelling. Beyond highlighting the value of long-term research in tundra systems, the insights derived herein should also find application to the study of ecological responses to environmental change in other biomes as well. PMID:23836784

  19. How to preserve the tundra in a warming climate?

    NASA Astrophysics Data System (ADS)

    Käyhkö, Jukka

    2014-05-01

    The warming climate of the polar regions may change much of the current arctic-alpine tundra to forest or dense scrubland. This modification requires adaptation by traditional livelihoods such as reindeer herding, which relies on diverse, seasonal pasturelands. Vegetation change may also trigger positive warming feedbacks, where more abundant forest-scrub vegetation will decrease the global albedo. NCoE Tundra team investigates the complex climate-animal-plant interaction of the tundra ecosystem and aim to unravel the capability of herbivorous mammals to control the expansion of woody vegetation. Our interdisciplinary approach involves several work packages, whose results will be summarised in the presentation. In the ecological WPs, we study the dynamics of the natural food chains involving small herbivorous and the impacts of reindeer on the vegetation and the population dynamics of those arctic-alpine plants, which are most likely to become threatened in a warmer climate. Our study demonstrates the potential of a relatively sparse reindeer stocks (2-5 heads per km2) together with natural populations of arvicoline rodents to prevent the expansion of erect woody plants at the arctic-alpine timberline. In the climatic WPs we study the impact of grazing-dependent vegetation differences on the fraction of solar energy converted to heat. In the socio-economic WPs, we study the conditions for maintaining the economic and cultural viability of reindeer herding while managing the land use so that the arctic-alpine biota would be preserved.

  20. Anurans in a Subarctic Tundra Landscape Near Cape Churchill, Manitoba

    USGS Publications Warehouse

    Reiter, M.E.; Boal, C.W.; Andersen, D.E.

    2008-01-01

    Distribution, abundance, and habitat relationships of anurans inhabiting subarctic regions are poorly understood, and anuran monitoring protocols developed for temperate regions may not be applicable across large roadless areas of northern landscapes. In addition, arctic and subarctic regions of North America are predicted to experience changes in climate and, in some areas, are experiencing habitat alteration due to high rates of herbivory by breeding and migrating waterfowl. To better understand subarctic anuran abundance, distribution, and habitat associations, we conducted anuran calling surveys in the Cape Churchill region of Wapusk National Park, Manitoba, Canada, in 2004 and 2005. We conducted surveys along ~l-km transects distributed across three landscape types (coastal tundra, interior sedge meadow-tundra, and boreal forest-tundra interface) to estimate densities and probabilities of detection of Boreal Chorus Frogs (Pseudacris maculata) and Wood Frogs (Lithobates sylvaticus). We detected a Wood Frog or Boreal Chorus Frog on 22 (87%) of 26 transects surveyed, but probability of detection varied between years and species and among landscape types. Estimated densities of both species increased from the coastal zone inland toward the boreal forest edge. Our results suggest anurans occur across all three landscape types in our study area, but that species-specific spatial patterns exist in their abundances. Considerations for both spatial and temporal variation in abundance and detection probability need to be incorporated into surveys and monitoring programs for subarctic anurans.

  1. Lipid biomarkers, pigments and cyanobacterial diversity of microbial mats across intertidal flats of the arid coast of the Arabian Gulf (Abu Dhabi, UAE).

    PubMed

    Abed, Raeid M M; Kohls, Katharina; Schoon, Raphaela; Scherf, Ann-Kathrin; Schacht, Marion; Palinska, Katarzyna A; Al-Hassani, Huda; Hamza, Waleed; Rullkötter, Jürgen; Golubic, Stjepko

    2008-09-01

    Variations in morphology, fatty acids, pigments and cyanobacterial community composition were studied in microbial mats across intertidal flats of the arid Arabian Gulf coast. These mats experience combined extreme conditions of salinity, temperature, UV radiation and desiccation depending on their tidal position. Different mat forms were observed depending on the topology of the coast and location. The mats contained 63 fatty acids in different proportions. The increased amounts of unsaturated fatty acids (12-39%) and the trans/cis ratio (0.6-1.6%) of the cyanobacterial fatty acid n-18:1omega9 in the higher tidal mats suggested an adaptation of the mat microorganisms to environmental stress. Chlorophyll a concentrations suggested lower cyanobacterial abundance in the higher than in the lower intertidal mats. Scytonemin concentrations were dependent on the increase in solar irradiation, salinity and desiccation. The mats showed richness in cyanobacterial species, with Microcoleus chthonoplastes and Lyngbya aestuarii morphotypes as the dominant cyanobacteria. Denaturing gradient gel electrophoresis patterns suggested shifts in the cyanobacterial community dependent on drainage efficiency and salinity from lower to higher tidal zones. We conclude that the topology of the coast and the variable extreme environmental conditions across the tidal flat determine the distribution of microbial mats as well as the presence or absence of different microorganisms.

  2. Lipid Biomarkers for a Hypersaline Microbial Mat Community

    NASA Technical Reports Server (NTRS)

    Jahnke, Linda; Orphan, Victoria; Embaye, Tsegereda; Turk, Kendra; Kubo, Mike; Summons, Roger

    2004-01-01

    The use of lipid biomarkers and their carbon isotopic compositions are valuable tools for establishing links to ancient microbial ecosystems. Various lipids associated with specific microbial groups can serve as biomarkers for establishing organism source and function in contemporary microbial ecosystems (membrane lipids), and by analogy, potential relevance to ancient organic-rich sedimentary rocks (geolipids). As witnessed by the stromatolite record, benthic microbial mats grew in shallow water lagoonal environments. Our recent work has focused on lipid biomarker analysis of a potential analogue for such ancient mats growing in a set of hypersaline evaporation ponds at Guerrero Negro, Baja California Sur, Mexico. The aerobic, surface layer of this mat (0 to 1 mm) contained a variety of ester-bound fatty acids (FA) representing a diverse bacterial population including cyanobacteria, sulphate reducers (SRB) and heterotrophs. Biomarkers for microeukaryotes detected in this layer included sterols, C-20 polyunsaturated FA and a highly branched isoprenoid, diagnostic for diatoms. Cyanobacteria were also indicated by the presence of a diagnostic set of mid-chain methylalkanes. C-28, to C-34 wax esters (WXE) present in relatively small amounts in the upper 3 mm of the mat are considered biomarkers for green non-sulphur bacteria. Ether-bound isoprenoids were also identified although in considerably lower abundance than ester-bound FA (approx. 1:l0). These complex ether lipids included archatol, hydroxyarchaeol and a C-40 tetraether, all in small amounts. After ether cleavage with boron tribromide, the major recovered isoprenyl was a C-30:1. This C(sub 30;1) yelded squalane after hydrogenation, a known geobiomarker for hypersaline environments in ancient oils and sediments. In this mat, it represents the dominant Archaeal population. The carbon isotopic composition of biomarker lipids were generally depleted relative to the bulk organic material (delta C-13 TOC -10%). Most

  3. Effects of chronic warming and nutrient additions on ecosystem respiration and methane fluxes along a tundra moisture gradient

    SciTech Connect

    Nadelhoffer, K.; Murray, G.; Giblin, A.; Shaver, G.; Laundre, J.; Johnson, L.; Stanley, A. ); Schimel, J. )

    1994-06-01

    We measured ecosystem respiration (ER: or CO[sub 2] flux), methane (CH[sub 4]) fluxes and net ecosystem production (NEP) near Toolik Lake, Alaska to compare effects of temperature, moisture and nutrients on tundra C balances. We measured fluxes using closed chambers in control, warmed and fertilized plots in wet, moist and dry tundra. ER rankings of tundra types differed between years. In 1992 ER was [approximately]70 g C m[sup [minus]2]y[sup [minus]1] in wet and moist tundra and was 50% lower in dry tundra. In 1993 ER was >150 g C m[sup [minus]2]y[sup [minus]1] in moist tundra and [approximately]55 g C m[sup [minus]2]y[sup [minus]1] in wet and dry tundra. CH[sub 4] emissions ranged from 3.5 to 7 g C m[sup [minus]2]y[sup [minus]1] in wet and from 0.6 to 2.8 g C m[sup [minus]2]y[sup [minus]1] in moist tundra. Dry tundra consumed about 0.1 g CH[sub 4]-C m[sup [minus]2]y[sup [minus]1]. In wet tundra ER increased slightly with warming but dramatically with fertilization. Wet tundra NEP increased with fertilization but not with warming. CH[sub 4] emissions from wet tundra increased with warming but decreased with fertilization. Warming and fertilization increased ER but neither treatment affected NEP in moist tundra. CH[sub 4] emissions from moist tundra responded similarly but less dramatically to treatments than did wet tundra CH[sub 4] fluxes. Warming did not affect ER or NEP in dry tundra, fertilization increased both process. Consumption of CH[sub 4] in dry tundra increased with warming but decreased with fertilization.

  4. Chemical and spectroscopic analyses of organic matter transformation in warming tundra soils

    NASA Astrophysics Data System (ADS)

    Herndon, E.; Roy Chowdhury, T.; Mann, B. F.; Graham, D. E.; Bargar, J.; Gu, B.; Liang, L.

    2013-12-01

    Many tundra soils are currently major carbon sinks; however, an increase in temperature may shift these systems to C sources and create a positive feedback for warming. In order to predict future C release from tundra soils, it is necessary to quantify rates of SOM degradation and to identify the reactants and products of microbial decomposition reactions. In this study, multiple spectroscopic techniques are used to investigate SOM during laboratory incubations of tundra soils. We aim to characterize the chemical transformation of organic matter during decomposition as a function of temperature and geochemistry. Frozen soil cores were obtained from the Barrow Environmental Observatory (BEO) in northern Alaska as part of the Next Generation Ecosystem Experiment Arctic project. To investigate the influence of temperature on organic matter degradation and compositional changes, soil horizons from each core were homogenized and soil material was incubated at -2°C, +4°C, or +8°C. Samples were sacrificed periodically over 100 days, and chemical and physical extractions were used to separate SOM into operationally-defined pools, including light (density < 1.6 g cm-2) and mineral-bound, and water-, acid-, base-, and non-soluble fractions. A suite of wet-chemical and spectroscopic analyses was used to measure CO2 and CH4 formation and soil C compositional changes, including techniques such as Fourier transform infrared spectroscopy, high performance liquid chromatography (HPLC), high resolution mass spectrometry, and X-ray absorption spectroscopy. Detailed chemical and spectroscopic analyses reveal significant differences amongst extracts and with depth in the soil. In general, more organic C was extracted in the base than in the acid and water fractions, and mineral-bound organic C increased with depth. The water-soluble C fraction showed the lowest molar absorptivity of the three extracts and consisted of mostly lower-molecular weight organics. Acid-soluble C increased

  5. Hydroponic root mats for wastewater treatment-a review.

    PubMed

    Chen, Zhongbing; Cuervo, Diego Paredes; Müller, Jochen A; Wiessner, Arndt; Köser, Heinz; Vymazal, Jan; Kästner, Matthias; Kuschk, Peter

    2016-08-01

    Hydroponic root mats (HRMs) are ecotechnological wastewater treatment systems where aquatic vegetation forms buoyant filters by their dense interwoven roots and rhizomes, sometimes supported by rafts or other floating materials. A preferential hydraulic flow is created in the water zone between the plant root mat and the bottom of the treatment system. When the mat touches the bottom of the water body, such systems can also function as HRM filter; i.e. the hydraulic flow passes directly through the root zone. HRMs have been used for the treatment of various types of polluted water, including domestic wastewater; agricultural effluents; and polluted river, lake, stormwater and groundwater and even acid mine drainage. This article provides an overview on the concept of applying floating HRM and non-floating HRM filters for wastewater treatment. Exemplary performance data are presented, and the advantages and disadvantages of this technology are discussed in comparison to those of ponds, free-floating plant and soil-based constructed wetlands. Finally, suggestions are provided on the preferred scope of application of HRMs. PMID:27164889

  6. Hydroponic root mats for wastewater treatment-a review.

    PubMed

    Chen, Zhongbing; Cuervo, Diego Paredes; Müller, Jochen A; Wiessner, Arndt; Köser, Heinz; Vymazal, Jan; Kästner, Matthias; Kuschk, Peter

    2016-08-01

    Hydroponic root mats (HRMs) are ecotechnological wastewater treatment systems where aquatic vegetation forms buoyant filters by their dense interwoven roots and rhizomes, sometimes supported by rafts or other floating materials. A preferential hydraulic flow is created in the water zone between the plant root mat and the bottom of the treatment system. When the mat touches the bottom of the water body, such systems can also function as HRM filter; i.e. the hydraulic flow passes directly through the root zone. HRMs have been used for the treatment of various types of polluted water, including domestic wastewater; agricultural effluents; and polluted river, lake, stormwater and groundwater and even acid mine drainage. This article provides an overview on the concept of applying floating HRM and non-floating HRM filters for wastewater treatment. Exemplary performance data are presented, and the advantages and disadvantages of this technology are discussed in comparison to those of ponds, free-floating plant and soil-based constructed wetlands. Finally, suggestions are provided on the preferred scope of application of HRMs.

  7. Distinct temperature sensitivity among taiga and tundra shrubs in Alaska

    NASA Astrophysics Data System (ADS)

    Andreu-Hayles, L.; Anchukaitis, K. J.; D'Arrigo, R.

    2014-12-01

    Shrub expansion into Arctic and alpine tundra ecosystems is well documented, mostly over the last 50 years, based on remote sensing data, aerial photography, and in-situ observations. Warming temperatures are considered the main driver of the observed change in shrub vegetation patterns. Here, we assess the relationship between temperatures and shrub growth from five populations of Salix spp. (willow) and Alnus spp. (alder) in Alaska growing within the tundra and the boreal forest (~taiga) using dendrochronological techniques. The three tundra shrub sites are located on the Dalton Highway north from Toolik Lake (~69ºN 148ºW), whereas the two taiga shrub sites are located closer to Fairbanks at the Twelve Mile Summit site (~65ºN 146ºW). Because shrub ages vary among the studied populations lead to different time spans for the ring-width chronologies generated, a common period with available satellite data spanning from 1982 to 2010 was selected for this study. All tundra shrub chronologies shared a strong positive response to summer temperatures despite growing in heterogeneous site conditions and belonging to different species. In contrast, in the taiga, summer temperatures enhance willow growth, whereas alder growth appears almost insensitive to temperature over the interval studied. Extending the analyses back in time, a very strong positive relationship was found between alder ring-width and June temperatures prior to 1970. This phenomenon, a weakening of the previously existing relationship between growth and temperatures, was also detected in white spruce (Picea glauca) growing at the same site, and it is known in the literature as the 'divergence problem'. Thus, at this taiga location, alder shrubs and trees seem to have similar growth patterns. Summer temperatures no longer seem to enhance taiga alder growth. Shrubs of different species exposed to the same climatic conditions can exhibit varied growth responses. The distinct temperature sensitivities

  8. Changing Seasonality of Tundra Vegetation and Associated Climatic Variables

    NASA Astrophysics Data System (ADS)

    Bhatt, U. S.; Walker, D. A.; Raynolds, M. K.; Bieniek, P.; Epstein, H. E.; Comiso, J. C.; Pinzon, J.; Tucker, C. J.; Steele, M.; Ermold, W. S.; Zhang, J.

    2014-12-01

    This study documents changes in the seasonality of tundra vegetation productivity and its associated climate variables using long-term data sets. An overall increase of Pan-Arctic tundra greenness potential corresponds to increased land surface temperatures and declining sea ice concentrations. While sea ice has continued to decline, summer land surface temperature and vegetation productivity increases have stalled during the last decade in parts of the Arctic. To understand the processes behind these features we investigate additional climate parameters. This study employs remotely sensed weekly 25-km sea ice concentration, weekly surface temperature, and bi-weekly NDVI from 1982 to 2013. Maximum NDVI (MaxNDVI, Maximum Normalized Difference Vegetation Index), Time Integrated NDVI (TI-NDVI), Summer Warmth Index (SWI, sum of degree months above freezing during May-August), ocean heat content (PIOMAS, model incorporating ocean data assimilation), and snow water equivalent (GlobSnow, assimilated snow data set) are explored. We analyzed the data for the full period (1982-2013) and for two sub-periods (1982-1998 and 1999-2013), which were chosen based on the declining Pan-Arctic SWI since 1998. MaxNDVI has increased from 1982-2013 over most of the Arctic but has declined from 1999 to 2013 over western Eurasia, northern Canada, and southwest Alaska. TI-NDVI has trends that are similar to those for MaxNDVI for the full period but displays widespread declines over the 1999-2013 period. Therefore, as the MaxNDVI has continued to increase overall for the Arctic, TI-NDVI has been declining since 1999. SWI has large relative increases over the 1982-2013 period in eastern Canada and Greenland and strong declines in western Eurasia and southern Canadian tundra. Weekly Pan-Arctic tundra land surface temperatures warmed throughout the summer during the 1982-1998 period but display midsummer declines from 1999-2013. Weekly snow water equivalent over Arctic tundra has declined over

  9. Cyanobacterial mats: Microanalysis of community metabolism

    NASA Technical Reports Server (NTRS)

    Cohen, Y.; Bermudes, D.; Fischer, U.; Haddad, R.; Prufert, L.; Scheulderman-Suylen, T.; Shaw, T.

    1985-01-01

    The microbial communities in two sites were studied using several approaches: (1) light microscopy; (2) the measurement of microprofiles of oxygen and sulfide at the surface of the microbial mat; (3) the study of diurnal variation of oxygen and sulfides; (4) in situ measurement of photosynthesis and sulfate reduction and study of the coupling of these two processes; (5) measurement of glutathione in the upper layers of the microbial mat as a possible oxygen quencher; (6) measurement of reduced iron as a possible intermediate electron donor along the established redoxcline in the mats; (7) measurement of dissolved phosphate as an indicator of processes of break down of organic matter in these systems; and (8) measurement of carbon dioxide in the interstitial water and its delta C-13 in an attempt to understand the flow of CO2 through the systems. Microbial processes of primary production and initial degradation at the most active zone of the microbial mat were analyzed.

  10. Thermal actuation of graphene oxide nanoribbon mats

    NASA Astrophysics Data System (ADS)

    Oh, Jiyoung; Kozlov, Mikhail E.; Carretero-González, Javier; Castillo-Martínez, Elizabeth; Baughman, Ray H.

    2011-03-01

    Graphene oxide nanoribbons (GOr), obtained by chemically unzipping multi-walled carbon nanotubes, were assembled into macroscopic mats by vacuum filtration. These mats exhibited up to 1.6% reversible contraction when electrically heated at ambient. The experimentally derived work capacity of the mats was about 40 J/kg, which is similar to that of natural muscle. It was limited by the mechanical strength of mats and can be increased upon optimization of their preparation conditions. X-ray diffraction measurements indicated reversible changes in the interplanar spacing of GOr layers during heating. These dimensional changes can be associated with reversible adsorption/desorption of water molecules between GOr layers and used in thermally-driven high performance artificial muscles and moisture sensors.

  11. Alaska North Slope Tundra Travel Model and Validation Study

    SciTech Connect

    Harry R. Bader; Jacynthe Guimond

    2006-03-01

    The Alaska Department of Natural Resources (DNR), Division of Mining, Land, and Water manages cross-country travel, typically associated with hydrocarbon exploration and development, on Alaska's arctic North Slope. This project is intended to provide natural resource managers with objective, quantitative data to assist decision making regarding opening of the tundra to cross-country travel. DNR designed standardized, controlled field trials, with baseline data, to investigate the relationships present between winter exploration vehicle treatments and the independent variables of ground hardness, snow depth, and snow slab thickness, as they relate to the dependent variables of active layer depth, soil moisture, and photosynthetically active radiation (a proxy for plant disturbance). Changes in the dependent variables were used as indicators of tundra disturbance. Two main tundra community types were studied: Coastal Plain (wet graminoid/moist sedge shrub) and Foothills (tussock). DNR constructed four models to address physical soil properties: two models for each main community type, one predicting change in depth of active layer and a second predicting change in soil moisture. DNR also investigated the limited potential management utility in using soil temperature, the amount of photosynthetically active radiation (PAR) absorbed by plants, and changes in microphotography as tools for the identification of disturbance in the field. DNR operated under the assumption that changes in the abiotic factors of active layer depth and soil moisture drive alteration in tundra vegetation structure and composition. Statistically significant differences in depth of active layer, soil moisture at a 15 cm depth, soil temperature at a 15 cm depth, and the absorption of photosynthetically active radiation were found among treatment cells and among treatment types. The models were unable to thoroughly investigate the interacting role between snow depth and disturbance due to a lack

  12. Nonwoven filtration mat production by electrospinning method

    NASA Astrophysics Data System (ADS)

    Lackowski, M.; Krupa, A.; Jaworek, A.

    2011-06-01

    The filtration of nanoparticles and submicron particles is an important problem in industry and health protection. One of the methods which can be used to solve this problem is to use nonwoven nanofibrous filters. The process of producing filtration mats of different thickness by electrospinning is presented in the paper. The experimental results on filtration properties of nanofibrous filter mat, including the efficiency of removal of cigarette smoke particles from a gas are also presented.

  13. Bioremediation of oil by marine microbial mats.

    PubMed

    Cohen, Yehuda

    2002-12-01

    Cyanobacterial mats developing in oil-contaminated sabkhas along the African coasts of the Gulf of Suez and in the pristine Solar Lake, Sinai, were collected for laboratory studies. Samples of both mats showed efficient degradation of crude oil in the light, followed by development of an intense bloom of Phormidium spp. and Oscillatoria spp. Isolated cyanobacterial strains, however, did not degrade crude oil in axenic cultures. Strains of sulfate-reducing bacteria and aerobic heterotrophs were capable of degrading model compounds of aliphatic and aromatic hydrocarbons. Results indicate that degradation of oil was done primarily by aerobic heterotrophic bacteria. The oxygenic photosynthesis of oil-insensitive cyanobacteria supplied the molecular oxygen for the efficient aerobic metabolism of organisms, such as Marinobacter sp. The diurnal shifts in environmental conditions at the mat surface, from highly oxic conditions in the light to anaerobic sulfide-rich habitat in the dark, may allow the combined aerobic and anaerobic degradation of crude oil at the mat surface. Hence, coastal cyanobacterial mats may be used for the degradation of coastline oil spills. Oxygen microelectrodes detected a significant inhibition of photosynthetic activity subsequent to oil addition. This prevailed for a few hours and then rapidly recovered. In addition, shifts in bacterial community structure following exposure to oil were determined by denaturing gradient gel electrophoresis of PCR-amplified fractions of 16S rRNA from eubacteria, cyanobacteria and sulfate-reducing bacteria. Since the mats used for the present study were obtained from oil-contaminated environments, they were believed to be preequilibrated for petroleum remediation. The mesocosm system at Eilat provided a unique opportunity to study petroleum degradation by mats formed under different salinities (up to 21%). These mats, dominated by cyanobacteria, can serve as close analogues to the sabkhas contaminated during the

  14. Microbial Diversity and Lipid Abundance in Microbial Mats from a Sulfidic, Saline, Warm Spring in Utah, USA

    NASA Astrophysics Data System (ADS)

    Gong, J.; Edwardson, C.; Mackey, T. J.; Dzaugis, M.; Ibarra, Y.; Course 2012, G.; Frantz, C. M.; Osburn, M. R.; Hirst, M.; Williamson, C.; Hanselmann, K.; Caporaso, J.; Sessions, A. L.; Spear, J. R.

    2012-12-01

    The microbial diversity of Stinking Springs, a sulfidic, saline, warm spring northeast of the Great Salt Lake was investigated. The measured pH, temperature, salinity, and sulfide concentration along the flow path ranged from 6.64-7.77, 40-28° C, 2.9-2.2%, and 250 μM to negligible, respectively. Five sites were selected along the flow path and within each site microbial mats were dissected into depth profiles based on the color and texture of the mat layers. Genomic DNA was extracted from each layer, and the 16S rRNA gene was amplified and sequenced on the Roche 454 Titanium platform. Fatty acids were also extracted from the mat layers and analyzed by liquid chromatography and mass spectrometry. The mats at Stinking Springs were classified into roughly two morphologies with respect to their spatial distribution: loose, sometimes floating mats proximal to the spring source; and thicker, well-laminated mats distal to the spring source. Loosely-laminated mats were found in turbulent stream flow environments, whereas well-laminated mats were common in less turbulent sheet flows. Phototrophs, sulfur oxidizers, sulfate reducers, methanogens, other bacteria and archaea were identified by 16S rRNA gene sequences. Diatoms, identified by microscopy and lipid analysis were found to increase in abundance with distance from the source. Methanogens were generally more abundant in deeper mat laminae. Photoheterotrophs were found in all mat layers. Microbial diversity increased significantly with depth at most sites. In addition, two distinct microbial streamers were identified and characterized at the two fast flowing sites. These two streamer varieties were dominated by either cyanobacteria or flavobacteria. Overall, our genomic and lipid analysis suggest that the physical and chemical environment is more predictive of the community composition than mat morphology. Site Map

  15. Enhanced dechlorination of trichloroethylene using electrospun polymer nanofibrous mats immobilized with iron/palladium bimetallic nanoparticles.

    PubMed

    Ma, Hui; Huang, Yunpeng; Shen, Mingwu; Guo, Rui; Cao, Xueyan; Shi, Xiangyang

    2012-04-15

    Fe/Pd bimetallic nanoparticles (NPs) have held great promise for treating trichloroethylene (TCE)-contaminated groundwater, without the accumulation of chlorinated intermediates. However, the conventionally used colloidal Fe/Pd NPs usually aggregate rapidly, resulting in a reduced reactivity. To reduce the particle aggregation, we employed electrospun polyacrylic acid (PAA)/polyvinyl alcohol (PVA) polymer nanofibers as a nanoreactor to immobilize Fe/Pd bimetallic NPs. In the study, the water-stable PAA/PVA nanofibrous mats were complexed with Fe (III) ions via the binding with the free carboxyl groups of PAA for subsequent formation and immobilization of zero-valent iron (ZVI) NPs. Fe/Pd bimetallic NPs were then formed by the partial reduction of Pd(II) ions with ZVI NPs. The formed electrospun nanofibrous mats containing Fe/Pd bimetallic NPs with a diameter of 2.8 nm were characterized by scanning electron microscopy, energy-dispersive spectroscopy, transmission electron microscopy, thermogravimetric analysis, and inductively coupled plasma-atomic emission spectroscopy. The Fe/Pd NP-containing electrospun PAA/PVA nanofibrous mats exhibited higher reactivity than that of the ZVI NP-containing mats or colloidal Fe/Pd NPs in the dechlorination of trichloroethylene (TCE), which was used as a model contaminant. With the high surface area to volume ratio, high porosity, and great reusability of the fibrous mats immobilized with the bimetallic NPs, the composite nanofibrous mats should be amenable for applications in remediation of various environmental contaminants. PMID:22138171

  16. Enhanced dechlorination of trichloroethylene using electrospun polymer nanofibrous mats immobilized with iron/palladium bimetallic nanoparticles.

    PubMed

    Ma, Hui; Huang, Yunpeng; Shen, Mingwu; Guo, Rui; Cao, Xueyan; Shi, Xiangyang

    2012-04-15

    Fe/Pd bimetallic nanoparticles (NPs) have held great promise for treating trichloroethylene (TCE)-contaminated groundwater, without the accumulation of chlorinated intermediates. However, the conventionally used colloidal Fe/Pd NPs usually aggregate rapidly, resulting in a reduced reactivity. To reduce the particle aggregation, we employed electrospun polyacrylic acid (PAA)/polyvinyl alcohol (PVA) polymer nanofibers as a nanoreactor to immobilize Fe/Pd bimetallic NPs. In the study, the water-stable PAA/PVA nanofibrous mats were complexed with Fe (III) ions via the binding with the free carboxyl groups of PAA for subsequent formation and immobilization of zero-valent iron (ZVI) NPs. Fe/Pd bimetallic NPs were then formed by the partial reduction of Pd(II) ions with ZVI NPs. The formed electrospun nanofibrous mats containing Fe/Pd bimetallic NPs with a diameter of 2.8 nm were characterized by scanning electron microscopy, energy-dispersive spectroscopy, transmission electron microscopy, thermogravimetric analysis, and inductively coupled plasma-atomic emission spectroscopy. The Fe/Pd NP-containing electrospun PAA/PVA nanofibrous mats exhibited higher reactivity than that of the ZVI NP-containing mats or colloidal Fe/Pd NPs in the dechlorination of trichloroethylene (TCE), which was used as a model contaminant. With the high surface area to volume ratio, high porosity, and great reusability of the fibrous mats immobilized with the bimetallic NPs, the composite nanofibrous mats should be amenable for applications in remediation of various environmental contaminants.

  17. Nitrogen dynamics in arctic tundra soils of varying age: differential responses to fertilization and warming.

    PubMed

    Yano, Yuriko; Shaver, Gaius R; Rastetter, Edward B; Giblin, Anne E; Laundre, James A

    2013-12-01

    In the foothills of the Brooks Range, Alaska, different glaciation histories have created landscapes with varying soil age. Productivity of most of these landscapes is generally N limited, but varies widely, as do plant species composition and soil properties (e.g., pH). We hypothesized that the projected changes in productivity and vegetation composition under a warmer climate might be mediated through differential changes in N availability across soil age. We compared readily available [water-soluble NH4 (+), NO3 (-), and amino acids (AA)], moderately available (soluble proteins), hydrolyzable, and total N pools across three tussock-tundra landscapes with soil ages ranging from 11.5k to 300k years. The effects of fertilization and warming on these N pools were also compared for the two younger sites. Readily available N was highest at the oldest site, and AA accounted for 80-89 % of this N. At the youngest site, inorganic N constituted the majority (80-97 %) of total readily available N. This variation reflected the large differences in plant functional group composition and soil chemical properties. Long-term (8-16 years) fertilization increased the soluble inorganic N by 20- to 100-fold at the intermediate-age site, but only by twofold to threefold at the youngest site. Warming caused small and inconsistent changes in the soil C:N ratio and AA, but only in soils beneath Eriophorum vaginatum, the dominant tussock-forming sedge. These differential responses suggest that the ecological consequences of warmer climates on these tundra ecosystems are more complex than simply elevated N-mineralization rates, and that the responses of landscapes might be impacted by soil age, or time since deglaciation.

  18. Increased wintertime CO2 loss as a result of sustained tundra warming

    NASA Astrophysics Data System (ADS)

    Webb, Elizabeth E.; Schuur, Edward A. G.; Natali, Susan M.; Oken, Kiva L.; Bracho, Rosvel; Krapek, John P.; Risk, David; Nickerson, Nick R.

    2016-02-01

    Permafrost soils currently store approximately 1672 Pg of carbon (C), but as high latitudes warm, this temperature-protected C reservoir will become vulnerable to higher rates of decomposition. In recent decades, air temperatures in the high latitudes have warmed more than any other region globally, particularly during the winter. Over the coming century, the arctic winter is also expected to experience the most warming of any region or season, yet it is notably understudied. Here we present nonsummer season (NSS) CO2 flux data from the Carbon in Permafrost Experimental Heating Research project, an ecosystem warming experiment of moist acidic tussock tundra in interior Alaska. Our goals were to quantify the relationship between environmental variables and winter CO2 production, account for subnivean photosynthesis and late fall plant C uptake in our estimate of NSS CO2 exchange, constrain NSS CO2 loss estimates using multiple methods of measuring winter CO2 flux, and quantify the effect of winter soil warming on total NSS CO2 balance. We measured CO2 flux using four methods: two chamber techniques (the snow pit method and one where a chamber is left under the snow for the entire season), eddy covariance, and soda lime adsorption, and found that NSS CO2 loss varied up to fourfold, depending on the method used. CO2 production was dependent on soil temperature and day of season but atmospheric pressure and air temperature were also important in explaining CO2 diffusion out of the soil. Warming stimulated both ecosystem respiration and productivity during the NSS and increased overall CO2 loss during this period by 14% (this effect varied by year, ranging from 7 to 24%). When combined with the summertime CO2 fluxes from the same site, our results suggest that this subarctic tundra ecosystem is shifting away from its historical function as a C sink to a C source.

  19. Photosynthetic response of Eriophorum vaginatum to in situ shrub shading in tussock tundra of northern Alaska

    NASA Astrophysics Data System (ADS)

    Anderson-Smith, A.; Pattison, R.; Sullivan, P.; Welker, J. M.

    2009-12-01

    Eriophorum vaginatum (Cotton Grass) is an important component of moist acidic tussock tundra, a plant community that appears to be undergoing changes in species composition associated with climate warming. This species is one of the most abundant in the arctic tundra, and provides important forage for caribou in their calving grounds on the Arctic Coastal Plain and along their migratory route through the foothills of Alaska. Recently, remote sensing data, repeat photography and plot-level measurements have indicated that shrub abundance is increasing while Eriophorum abundance is either constant or decreasing. One possible explanation for the reduction of Eriophorum while Betula nana is increasing, is that lower light levels in the taller Betula canopy may be constraining Eriophorum photosynthesis and subsequently reducing plant growth. This study measured the effect of shading on the light response of Eriphorum leaf photosynthesis in four different sites near Toolik Lake Alaska during the summer of 2009. Measurements were taken in: 1) a shrub patch within the drift zone of the ITEX long term snow fence experiment, 2) an LTER shade house (50% shading) built in 1989, 3) water track site 1 and water track site 2 (i.e. control areas with no experimental manipulations) Average photosynthetic rates for Eriophorum at a light level of 800 PAR varied from 3.8 to 10.9 umol m-2 s-1 and were not significantly different in shaded and unshaded areas. This study indicates that shading by shrubs does not appear to be altering the light response of Eriophorum nor does long-term shading by itself eliminate Eriophorum from the community. An alternative explanation for the decline of Eriophorum while Betula increases in abundance under changing climates may be related to plant and soil mineral nutrition, plant water relations or biotic processes involving herbivores.

  20. Airborne Spectral Measurements of Surface-Atmosphere Anisotropy for Arctic Sea Ice and Tundra

    NASA Technical Reports Server (NTRS)

    Arnold, G. Thomas; Tsay, Si-Chee; King, Michael D.; Li, Jason Y.; Soulen, Peter F.

    1999-01-01

    Angular distributions of spectral reflectance for four common arctic surfaces: snow-covered sea ice, melt-season sea ice, snow-covered tundra, and tundra shortly after snowmelt were measured using an aircraft based, high angular resolution (1-degree) multispectral radiometer. Results indicate bidirectional reflectance is higher for snow-covered sea ice than melt-season sea ice at all wavelengths between 0.47 and 2.3 pm, with the difference increasing with wavelength. Bidirectional reflectance of snow-covered tundra is higher than for snow-free tundra for measurements less than 1.64 pm, with the difference decreasing with wavelength. Bidirectional reflectance patterns of all measured surfaces show maximum reflectance in the forward scattering direction of the principal plane, with identifiable specular reflection for the melt-season sea ice and snow-free tundra cases. The snow-free tundra had the most significant backscatter, and the melt-season sea ice the least. For sea ice, bidirectional reflectance changes due to snowmelt were more significant than differences among the different types of melt-season sea ice. Also the spectral-hemispherical (plane) albedo of each measured arctic surface was computed. Comparing measured nadir reflectance to albedo for sea ice and snow-covered tundra shows albedo underestimated 5-40%, with the largest bias at wavelengths beyond 1 pm. For snow-free tundra, nadir reflectance underestimates plane albedo by about 30-50%.

  1. Dynamics of Aboveground Phytomass of the Circumpolar Arctic Tundra During the Past Three Decades

    NASA Technical Reports Server (NTRS)

    Epstein, Howard E.; Raynolds, Martha K.; Walker, Donald A.; Bhatt, Uma S.; Tucker, Compton J.; Pinzon, Jorge E.

    2012-01-01

    Numerous studies have evaluated the dynamics of Arctic tundra vegetation throughout the past few decades, using remotely sensed proxies of vegetation, such as the normalized difference vegetation index (NDVI). While extremely useful, these coarse-scale satellite-derived measurements give us minimal information with regard to how these changes are being expressed on the ground, in terms of tundra structure and function. In this analysis, we used a strong regression model between NDVI and aboveground tundra phytomass, developed from extensive field-harvested measurements of vegetation biomass, to estimate the biomass dynamics of the circumpolar Arctic tundra over the period of continuous satellite records (1982-2010). We found that the southernmost tundra subzones (C-E) dominate the increases in biomass, ranging from 20 to 26%, although there was a high degree of heterogeneity across regions, floristic provinces, and vegetation types. The estimated increase in carbon of the aboveground live vegetation of 0.40 Pg C over the past three decades is substantial, although quite small relative to anthropogenic C emissions. However, a 19.8% average increase in aboveground biomass has major implications for nearly all aspects of tundra ecosystems including hydrology, active layer depths, permafrost regimes, wildlife and human use of Arctic landscapes. While spatially extensive on-the-ground measurements of tundra biomass were conducted in the development of this analysis, validation is still impossible without more repeated, long-term monitoring of Arctic tundra biomass in the field.

  2. Summertime CO2 fluxes and ecosystem respiration from marine animal colony tundra in maritime Antarctica

    NASA Astrophysics Data System (ADS)

    Zhu, Renbin; Bao, Tao; Wang, Qing; Xu, Hua; Liu, Yashu

    2014-12-01

    Net ecosystem CO2 exchange (NEE) and ecosystem respiration (ER) were investigated at penguin, seal and skua colony tundra and the adjacent animal-lacking tundra sites in maritime Antarctica. Net CO2 fluxes showed a large difference between marine animal colonies and animal-lacking tundra sites. The mean NEE from penguin, seal and skua colony tundra sites ranged from -37.2 to 5.2 mg CO2 m-2 h-1, whereas animal-lacking tundra sites experienced a larger net gain of CO2 with the mean flux range from -85.6 to -23.9 mg CO2 m-2 h-1. Ecosystem respiration rates at penguin colony tundra sites (mean 201.3 ± 31.4 mg CO2 m-2 h-1) were significantly higher (P < 0.01) than those at penguin-lacking tundra sites (64.0-87.1 mg CO2 m-2 h-1). The gross photosynthesis (Pg) showed a consistent trend to ER with the highest mean Pg (219.7 ± 34.5 mg CO2 m-2 h-1) at penguin colony tundra sites. When all the data were combined from different types of tundra ecosystems, summertime tundra NEE showed a weak or strong positive correlation with air temperature, 0-10 cm soil temperature or precipitation. The NEE from marine animal colony and animal-lacking tundra was significantly positively correlated (P < 0.001) with soil organic carbon (SOC), total nitrogen (TN) contents and C:N ratios. The ER showed a significant exponential correlation (P < 0.01) with mean 0-15 cm soil temperature, and much higher Q10 value (9.97) was obtained compared with other terrestrial ecosystems, indicating greater temperature sensitivity of tundra ecosystem respiration. Our results indicate that marine animals and the deposition of their excreta might have an important effect on tundra CO2 exchanges and ecosystem respiration, and current climate warming will further decrease tundra CO2 sink in maritime Antarctica.

  3. Tundra in the rain: differential vegetation responses to three years of experimentally doubled summer precipitation in Siberian shrub and Swedish bog tundra.

    PubMed

    Keuper, Frida; Parmentier, Frans-Jan W; Blok, Daan; van Bodegom, Peter M; Dorrepaal, Ellen; van Hal, Jurgen R; van Logtestijn, Richard S P; Aerts, Rien

    2012-01-01

    Precipitation amounts and patterns at high latitude sites have been predicted to change as a result of global climatic changes. We addressed vegetation responses to three years of experimentally increased summer precipitation in two previously unaddressed tundra types: Betula nana-dominated shrub tundra (northeast Siberia) and a dry Sphagnum fuscum-dominated bog (northern Sweden). Positive responses to approximately doubled ambient precipitation (an increase of 200 mm year(-1)) were observed at the Siberian site, for B. nana (30 % larger length increments), Salix pulchra (leaf size and length increments) and Arctagrostis latifolia (leaf size and specific leaf area), but none were observed at the Swedish site. Total biomass production did not increase at either of the study sites. This study corroborates studies in other tundra vegetation types and shows that despite regional differences at the plant level, total tundra plant productivity is, at least at the short or medium term, largely irresponsive to experimentally increased summer precipitation.

  4. Recovery of plant biomass and soil N cycling in Alaskan tundra following an unusual fire

    NASA Astrophysics Data System (ADS)

    Bret-Harte, M. S.; Mack, M. C.; Huebner, D. C.; Johnston, M.; Shaver, G. R.

    2012-12-01

    Climate warming is likely to increase the frequency of disturbances in the Arctic. The Anaktuvuk River fire of 2007 burned 1039 km2 of northern Alaskan tundra; this was unprecedented for this vegetation, which is clonal, slow-growing, and long-lived. We harvested plant biomass and soils from severely and moderately burned areas and controls in 2011 to assess recovery of plant productivity and soil N cycling four years after the fire. Biomass of vascular plants had recovered to nearly control levels in moderately burned areas, due primarily to resprouting by graminoids, particularly Eriophorum vaginatum. Graminoid biomass was actually greater in moderately burned tundra than in unburned tundra. Deciduous shrub and evergreen shrub biomass in moderately burned tundra was approximately half that seen in unburned tundra, but non-vascular plant biomass was much less, so that total aboveground biomass in moderately burned tundra had not returned to control levels. Severely burned tundra had less of all components of the community than in moderately burned tundra, except that there was higher biomass of non-vascular plants, due to colonization by fire-following liverworts and mosses. Productivity of vascular plants was similar in unburned and severely burned tundra plots, and higher in moderately burned plots, due in part to higher soil N availability. Recovery of plant biomass was largely due to resprouting of species that survived the fire, though numerous seedlings were seen. Biomass of vascular plants has recovered rapidly in the moderately burned sites, while severely burned sites and nonvascular plants are recovering more slowly, but the relative abundance of different species differs from unburned tundra. The relationship between spectral indices (NDVI, EVI-2) collected at the plot level and either biomass or NPP varied with burn category, which may complicate assessments of NPP by remote sensing following fire.

  5. Lipids of recently-deposited algal mats at Laguna Mormona, Baja California

    NASA Technical Reports Server (NTRS)

    Cardoso, J.; Brooks, P. W.; Eglinton, G.; Goodfellow, R.; Maxwell, J. R.; Philp, R. P.

    1976-01-01

    A preliminary survey of the lipid composition of the core of a recently deposited algal mat of a subtropical, hypersaline coastal pond is described. Two layers of the core were examined: the upper, 2-cm-thick layer, comprising the fresh algal mat of predominantly the blue-green species Microcoleus chthonoplastes, and the black anaerobic algal ooze at a depth of 10 cm. About 75% of the n-alkanes in the mat were accounted for by n-C17, with smaller amounts of higher homologues maximizing at n-C27. The ooze was characterized by a bimodal distribution with maxima at n-C17 and n-C27. The n-alkanoic acids distributions were similar to the corresponding n-alkane distributions. A marked decrease in the ratio of monounsaturated to saturated acids in the ooze relative to the mat was observed, which indicates a preferential removal of unsaturated components. Certain triterpenes of the hopane skeletal type were present in the mat and ooze. The presence of stanols and sterenes in the ooze with similar carbon number distributions suggests a relationship between them.

  6. Tundra Fire Effects Mapping from Synthetic Aperture Radar Satellite Data

    NASA Astrophysics Data System (ADS)

    Jenkins, L. K.; Bourgeau-Chavez, L. L.; French, N. H.; Loboda, T. V.; Chavez, M. C.; Hawkins, S. M.

    2013-12-01

    Traditional electro-optical, satellite-based methods of fire detection and monitoring are severely limited in the arctic due to persistent cloud cover and short growing seasons. Radar data can provide an alternative to traditional electro-optical methods due to all-weather imaging capabilities. Previous research in boreal forests and current evaluation in the Alaskan tundra shows that synthetic aperture radar (SAR) data can be used successfully to map burn perimeters and distinguish burned and unburned areas within the perimeter over a longer period of time than optical sensors. Results will be presented on the use of SAR data to measure spatial variations in the microwave signature across a fire scar as well as temporally throughout the growing season and across multiple years. The extensive historical archive of ERS-1 and -2 SAR data has been used to characterize three burned areas in the tundra regions of Alaska. These fires include the 1993 Wainwright fires in the north-western part of the North Slope (Fig 1), the 1999 Uvgoon fire in the Noatak National Preserve and 2007 Anaktuvuk River fire north of the Brooks Range in the central area of the North Slope. The data record includes pre-burn, burn, and post-burn observations until the fire scars are no longer discernible on the landscape. Our results show that burned areas are visible reliably five years post burn and then faintly apparent thereafter up to 12 or more years post-burn. Conversely, our analysis of electro-optical (Landsat) imagery shows near complete obscuration of the fire scar one year post-burn (Loboda et al. 2013). Also presented are results of an analysis of the effects of post-fire soil moisture, as measured in weather and climate datasets, on the SAR signature measured from the available image data archive. Reference: Loboda, T L, N H F French, C Hight-Harf, L Jenkins, M E Miller. 2013. Mapping fire extent and burn severity in Alaskan tussock tundra: An analysis of the spectral response of

  7. Decadal changes of phenological patterns over Arctic tundra biome

    NASA Astrophysics Data System (ADS)

    Jia, G. J.; Epstein, H. E.; Walker, D. A.; Wang, H.

    2008-12-01

    The northern high latitudes have experienced a continuous and accelerated trend of warming during the past 30 years, with most recent decade ranks the warmest years since 1850. Warmer springs are especially evident throughout the Arctic. Meanwhile, Arctic sea ice declined rapidly to unprecedented low extents in all months, with late summer experiences the most significant declining. Warming in the north is also evident from observations of early melting of snow and reducing snow cover. Now a key question is: in the warmth limited northern biome, what will happen to the phenological patterns of tundra vegetation as the global climate warms and seasonality of air temperature, sea ice, and snow cover shift? To answer the question we examined the onset of vegetation greenness, senescence of greenness, length of growing season, and dates of peak greenness along Arctic bioclimate gradients (subzones) to see how they change over years. Here, we combine multi-scale sub-pixel analysis and remote sensing time-series analysis to investigate recent decadal changes in vegetation phenology along spatial gradients of summer temperature and vegetation in the Arctic. The datasets used here are AVHRR 15-day 8 km time series, AVHRR 8-day 1 km dataset, and MODIS 8-day 500m Collection 5 dataset. There were detectable changes in phenological pattern over tundra biome in past two decades. Increases of vegetation greenness were observed in most of the summer periods in low arctic and mid-summer in high arctic. Peak greenness appeared earlier in high arctic and declined slower after peak in low arctic. Generally, tundra plants were having longer and stronger photosynthesis activities, and therefore increased annual vegetation productivities. Field studies have observed early growth and enhanced peak growth of many deciduous shrub species in tundra plant communities. These changes in seasonality are very likely to alter surface albedo and heat budget, modify plant photosynthesis

  8. Permafrost degradation stimulates carbon loss from experimentally warmed tundra.

    PubMed

    Natali, Susan M; Schuur, Edward A G; Webb, Elizabeth E; Pries, Caitlin E Hicks; Crummer, Kathryn G

    2014-03-01

    A large pool of organic carbon (C) has been accumulating in the Arctic for thousands of years because cold and waterlogged conditions have protected soil organic material from microbial decomposition. As the climate warms this vast and frozen C pool is at risk of being thawed, decomposed, and released to the atmosphere as greenhouse gasses. At the same time, some C losses may be offset by warming-mediated increases in plant productivity. Plant and microbial responses to warming ultimately determine net C exchange from ecosystems, but the timing and magnitude of these responses remain uncertain. Here we show that experimental warming and permafrost (ground that remains below 0 degrees C for two or more consecutive years) degradation led to a two-fold increase in net ecosystem C uptake during the growing season. However, warming also enhanced winter respiration, which entirely offset growing-season C gains. Winter C losses may be even higher in response to actual climate warming than to our experimental manipulations, and, in that scenario, could be expected to more than double overall net C losses from tundra to the atmosphere. Our results highlight the importance of winter processes in determining whether tundra acts as a C source or sink, and demonstrate the potential magnitude of C release from the permafrost zone that might be expected in a warmer climate.

  9. Tundra disturbance and ecosystem production: Implications for impact assessment

    NASA Astrophysics Data System (ADS)

    Truett, Joe C.; Kertell, Kenneth

    1992-07-01

    Environmental regulations governing industrial activities in tundra environments stem largely from the expected ecological effects of the activities. One of the major ecological effects of industrial activities is the surface subsidence associated with thermokarst, which can result in changes in primary and secondary production. The primary production changes associated with thermokarst are strongly governed by three ecosystem properties—soil temperature, water regime, and nutrient availability. Most disturbances set in motion a more-or-less predictable sequence of landscape change related to these properties: soil warming, thermokarst, surface flooding, accelerated organic matter decomposition, and increased nutrient availability. The warmed soil and the enhanced nutrient availability typically lead to increased annual primary production, increased dominance by graminoids, and reduced plant species diversity. These vegetational changes may in turn potentially enhance secondary production, but in general these second-level responses have yet to be quantified. More information is needed about the food-chain effects of tundra landscape disturbances before regulators can make well-informed predictions of impacts or plan useful habitat rehabilitation.

  10. Recovering glycoside hydrolase genes from active tundra cellulolytic bacteria.

    PubMed

    Pinnell, Lee J; Dunford, Eric; Ronan, Patrick; Hausner, Martina; Neufeld, Josh D

    2014-07-01

    Bacteria responsible for cellulose hydrolysis in situ are poorly understood, largely because of the relatively recent development of cultivation-independent methods for their detection and characterization. This study combined DNA stable-isotope probing (DNA-SIP) and metagenomics for identifying active bacterial communities that assimilated carbon from glucose and cellulose in Arctic tundra microcosms. Following DNA-SIP, bacterial fingerprint analysis of gradient fractions confirmed isotopic enrichment. Sequenced fingerprint bands and clone library analysis of 16S rRNA genes identified active bacterial taxa associated with cellulose-associated labelled DNA, including Bacteroidetes (Sphingobacteriales), Betaproteobacteria (Burkholderiales), Alphaproteobacteria (Caulobacteraceae), and Chloroflexi (Anaerolineaceae). We also compared glycoside hydrolase metagenomic profiles from bulk soil and heavy DNA recovered from DNA-SIP incubations. Active populations consuming [(13)C]glucose and [(13)C]cellulose were distinct, based on ordinations of light and heavy DNA. Metagenomic analysis demonstrated a ∼3-fold increase in the relative abundance of glycoside hydrolases in DNA-SIP libraries over bulk-soil libraries. The data also indicate that multiple displacement amplification introduced bias into the resulting metagenomic analysis. This research identified DNA-SIP incubation conditions for glucose and cellulose that were suitable for Arctic tundra soil and confirmed that DNA-SIP enrichment can increase target gene frequencies in metagenomic libraries.

  11. Tundra carbon balance under varying temperature and moisture regimes

    NASA Astrophysics Data System (ADS)

    Huemmrich, K. F.; Kinoshita, G.; Gamon, J. A.; Houston, S.; Kwon, H.; Oechel, W. C.

    2010-12-01

    To understand the effects of environmental change on tundra carbon balance, a manipulation experiment was performed in wet sedge tundra near Barrow, Alaska. Three replicates of six environmental treatments were made: control, heating, raising or lowering water table, and heating along with raising or lowering water table. Carbon fluxes were measured using a portable chamber for six days during the 2001 growing season. Spectral reflectance and meteorological measurements were also collected. Empirical models derived from flux measurements were developed for daily gross ecosystem production (GEP) and ecosystem respiration (Re). The amount of photosynthetically active radiation absorbed by the plants was strongly correlated with GEP. This relationship was not affected by treatment or time during the growing season. Re was related to soil temperature with a different relationship for each water level treatment. Re in the lowered water table treatment had a strong response to temperature changes, while the raised water table treatment showed little temperature response. These models calculated daily net ecosystem exchange for all of the treatments over the growing season. Warming increased both the seasonal carbon gain and carbon loss. By the end of summer the lowered water table treatments, both heated and unheated, were net carbon sources while all other treatments were sinks. Warming and/or raising the water table increased the strength of the net sink. Over the timescale of this experiment, water table primarily determined whether the ecosystem was a source or sink, with temperature modifying the strength of the source or sink.

  12. Tundra swan habitat preferences during migration in North Dakota

    USGS Publications Warehouse

    Earnst, S.L.

    1994-01-01

    I studied tundra swan (Cygnus columbianus columbianus) habitat preference in North Dakota during autumn migration, 1988-89. Many thousand tundra swans stop in the Prairie Pothole region during autumn migration, but swan resource use has not been quantified. I examined habitat preference in relation to an index of sago pondweed (Potamogeton pectinatus) presence, extent of open water, and wetland size. I compared habitat preference derived from counts of all swans to those derived from foraging swans only and cygnets only. Foraging swans preferred wetlands with sago pondweed (P = 0.03); the number of foraging swans per wetland was >4 times higher on wetlands with sago pondweed than on wetlands without sago. In contrast, nonforaging swans did not prefer wetlands with sago pondweed (P = 0.85) but preferred large wetlands (P = 0.02) and those with a high proportion of contiguous open water (P < 0.01). Thus, conclusions about habitat preference derived from counts of all swans, most of which were nonforaging, would not have revealed the importance of sago pondweed. Cygnets were more likely to be feeding than adults (P = 0.03) and occurred proportionately more often in smaller flocks (P = 0.04), but cygnets and adults had similar habitat preferences.

  13. Reactive composite compositions and mat barriers

    DOEpatents

    Langton, Christine A.; Narasimhan, Rajendran; Karraker, David G.

    2001-01-01

    A hazardous material storage area has a reactive multi-layer composite mat which lines an opening into which a reactive backfill and hazardous material are placed. A water-inhibiting cap may cover the hazardous material storage area. The reactive multi-layer composite mat has a backing onto which is placed an active layer which will neutralize or stabilize hazardous waste and a fronting layer so that the active layer is between the fronting and backing layers. The reactive backfill has a reactive agent which can stabilize or neutralize hazardous material and inhibit the movement of the hazardous material through the hazardous material storage area.

  14. Nitrogen cycle in microbial mats: completely unknown?

    NASA Astrophysics Data System (ADS)

    Coban, O.; Bebout, B.

    2015-12-01

    Microbial mats are thought to have originated around 3.7 billion years ago, most likely in the areas around submarine hydrothermal vents, which supplied a source of energy in the form of reduced chemical species from the Earth's interior. Active hydrothermal vents are also believed to exist on Jupiter's moon Europa, Saturn's moon Enceladus, and on Mars, earlier in that planet's history. Microbial mats have been an important force in the maintenance of Earth's ecosystems and the first photosynthesis was also originated there. Microbial mats are believed to exhibit most, if not all, biogeochemical processes that exist in aquatic ecosystems, due to the presence of different physiological groups of microorganisms therein. While most microbially mediated biogeochemical transformations have been shown to occur within microbial mats, the nitrogen cycle in the microbial mats has received very little study in spite of the fact that nitrogen usually limits growth in marine environments. We will present the first results in the determination of a complete nitrogen budget for a photosynthetic microbial mat. Both in situ sources and sinks of nitrogen in photosynthetic microbial mats are being measured using stable isotope techniques. Our work has a particular focus on recently described, but poorly understood, processes, e.g., anammox and dissimilatory nitrate reduction, and an emphasis on understanding the role that nitrogen cycling may play in generating biogenic nitrogen isotopic signatures and biomarker molecules. Measurements of environmental controls on nitrogen cycling should offer insight into the nature of co-evolution of these microbial communities and their planets of origin. Identifying the spatial (microscale) as well as temporal (diel and seasonal) distribution of nitrogen transformations, e.g., rates of nitrification and denitrification, within mats, particularly with respect to the distribution of photosynthetically-produced oxygen, is anticipated. The results

  15. Effect of Salinity on the Stable Carbon Isotopic Composition of Microbial Mats and Associated Lipid Biomarkers

    NASA Astrophysics Data System (ADS)

    Jahnke, L. L.; Parenteau, M. N.; Kubo, M. D.; Des Marais, D. J.

    2014-12-01

    Modern microbial mats are commonly used as analogs for understanding early ecosystem evolution. A primary feature of benthic ecosystems is the fixation of CO2 in the photic zone and transfer and/or mineralization of organic carbon through a diverse tropic structure. Generally, the resulting δ13C values for organic matter relative to DIC is small which indicates that these mats are CO2-limited. Microcoleus mat flux measurements indicate that small amounts of CO2 fixed during the day are lost to the overlying water at night as C13-enriched DIC (Des Marais and Canfield 1994). This loss results in depletion in mat organic matter and is thought to occur as a result of remineralized DIC fixation by chemo- and/or photoautotrophs. We have examined the fate of fixed carbon in hypersaline mats by analysis of the stable C-isotopes of bulk organic carbon and lipid compounds in a laminated-Microcoleus mat (90 ‰, pH 8.6) and in a gypsum-endoevaporitic, Halothece mat (163‰, pH 7.4). In the surface photic zone of Microcoleus mat, the δ13C TOC was -10.0 ‰ with membrane fatty acids (i-15, n-16, n-18, cy-19) ranging from -17.2 to -18.0‰. Cyanobacterial alkanes were similarly depleted (n-17 = -19.5‰). Eurkaryotic sterols and bacterial hopanoids were somewhat enriched with δ13C values ~-15‰. For Microcoleus mat, little variation occurred over 70 mm of core depth. The TOC and FA values for surface, endoevaporitic Halothece mat were generally similar to those of Microcoleus. However, below the surface gypsum crust, discrimination increased. Mass balance calculations for surface FA = -18.5‰ while the FA from layers below the crust = -25.2‰. The δ13C values for cyanobacterial alkanes (~-20‰) were similar from all layers while hopanoids from below crust were slightly depleted relative to those from surface. An apparent increased discrimination during fixation of remineralized DIC presumably by anoxygenic phototrophs present below the surface gypsum crust (Jahnke et al

  16. Can antibrowsing defense regulate the spread of woody vegetation in arctic tundra?

    USGS Publications Warehouse

    Bryant, John P.; Joly, Kyle; Chapin, F. Stuart; DeAngelis, Donald L.; Kielland, Knut

    2014-01-01

    Global climate warming is projected to promote the increase of woody plants, especially shrubs, in arctic tundra. Many factors may affect the extent of this increase, including browsing by mammals. We hypothesize that across the Arctic the effect of browsing will vary because of regional variation in antibrowsing chemical defense. Using birch (Betula) as a case study, we propose that browsing is unlikely to retard birch expansion in the region extending eastward from the Lena River in central Siberia across Beringia and the continental tundra of central and eastern Canada where the more effectively defended resin birches predominate. Browsing is more likely to retard birch expansion in tundra west of the Lena to Fennoscandia, Iceland, Greenland and South Baffin Island where the less effectively defended non-resin birches predominate. Evidence from the literature supports this hypothesis. We further suggest that the effect of warming on the supply of plant-available nitrogen will not significantly change either this pan-Arctic pattern of variation in antibrowsing defense or the resultant effect that browsing has on birch expansion in tundra. However, within central and east Beringia warming-caused increases in plant-available nitrogen combined with wildfire could initiate amplifying feedback loops that could accelerate shrubification of tundra by the more effectively defended resin birches. This accelerated shrubification of tundra by resin birch, if extensive, could reduce the food supply of caribou causing population declines. We conclude with a brief discussion of modeling methods that show promise in projecting invasion of tundra by woody plants.

  17. Frequent fires in ancient shrub tundra: implications of paleorecords for arctic environmental change.

    PubMed

    Higuera, Philip E; Brubaker, Linda B; Anderson, Patricia M; Brown, Thomas A; Kennedy, Alison T; Hu, Feng Sheng

    2008-03-05

    Understanding feedbacks between terrestrial and atmospheric systems is vital for predicting the consequences of global change, particularly in the rapidly changing Arctic. Fire is a key process in this context, but the consequences of altered fire regimes in tundra ecosystems are rarely considered, largely because tundra fires occur infrequently on the modern landscape. We present paleoecological data that indicate frequent tundra fires in northcentral Alaska between 14,000 and 10,000 years ago. Charcoal and pollen from lake sediments reveal that ancient birch-dominated shrub tundra burned as often as modern boreal forests in the region, every 144 years on average (+/- 90 s.d.; n = 44). Although paleoclimate interpretations and data from modern tundra fires suggest that increased burning was aided by low effective moisture, vegetation cover clearly played a critical role in facilitating the paleofires by creating an abundance of fine fuels. These records suggest that greater fire activity will likely accompany temperature-related increases in shrub-dominated tundra predicted for the 21(st) century and beyond. Increased tundra burning will have broad impacts on physical and biological systems as well as on land-atmosphere interactions in the Arctic, including the potential to release stored organic carbon to the atmosphere.

  18. [Vegetation biomass distribution characteristics of alpine tundra ecosystem in Changbai Mountains].

    PubMed

    Wei, Jing; Wu, Gang; Deng, Hongbing

    2004-11-01

    Climate change is one of the hotspots in global environment concerns, while alpine tundra ecosystem is most sensitive to global climate change. Because of the relatively small area of tundra, researches on alpine tundra ecosystem were much less. Based on the measurement of species biomass, dominant species organ biomass and vegetation biomass, this paper discussed the biomass spatial variation in alpine tundra ecosystem of Changbai Mountains. The results showed that among 43 species investigated, the first five species in biomass were Rhododendron chrysanthum (159.01 kg x hm(-2)), Vaccinium uliginosum var. alpinum (137.52 kg x hm(-2)), Vaccinium uliginosum (134.7 kg x hm(-2)), Dryas octopetala var. asiatica (131.5 kg x hm(-2)) and Salix rotundifolia (128.4 kg x hm(-2)), which were the dominant species in the alpine tundra ecosystem of Changbai Mountains. Along with increasing altitude, the ratio of below-/above-ground biomass and below-ground/total biomass gradually increased, while the vegetation biomass gradually decreased. The vegetation biomass showed a significant correlation with altitude in typical alpine tundra ecosystem of Changbai Mountains, and the average vegetation biomass was 2.21 t x hm(-2). Alpine tundra ecosystem is very important for microclimate regulation, soil improvement, water-holding, soil conservation, nutrient cycling, carbon fixation and oxygen production, and currently, it is the CO2 sink of Changbai Mountains.

  19. How will Shrub Expansion Impact Soil Carbon Sequestration in Arctic Tundra?

    NASA Astrophysics Data System (ADS)

    Czimczik, C. I.; Holden, S. R.; He, Y.; Randerson, J. T.

    2015-12-01

    Multiple lines of evidence suggest that plant productivity, and especially shrub abundance, is increasing in the Arctic in response to climate change. This greening is substantiated by increases in the Normalized Difference Vegetation Index, repeat photography and field observations. The implications of a greener Arctic on carbon sequestration by tundra ecosystems remain poorly understood. Here, we explore existing datasets of plant productivity and soil carbon stocks to quantify how greening, and in particular an expansion of woody shrubs, may translate to the sequestration of carbon in arctic soils. As an estimate of carbon storage in arctic tundra soils, we used the Northern Circumpolar Soil Carbon Database v2. As estimates of tundra type and productivity, we used the Circumpolar Arctic Vegetation map as well as the MODIS and Landsat Vegetation Continuous Fields, and MODIS GPP/NPP (MOD17) products. Preliminary findings suggest that in graminoid tundra and erect-shrub tundra higher shrub abundance is associated with greater soil carbon stocks. However, this relationship between shrub abundance and soil carbon is not apparent in prostrate-shrub tundra, or when comparing across graminoid tundra, erect-shrub tundra and prostrate-shrub tundra. Uncertainties originate from the extreme spatial (vertical and horizontal) heterogeneity of organic matter distribution in cryoturbated soils, the fact that (some) permafrost carbon stocks, e.g. yedoma, reflect previous rather than current vegetative cover, and small sample sizes, esp. in the High Arctic. Using Vegetation Continuous Fields and MODIS GPP/NPP (MOD17), we develop quantitative trajectories of soil carbon storage as a function of shrub cover and plant productivity in the Arctic (>60°N). We then compare our greening-derived carbon sequestration estimates to projected losses of carbon from thawing permafrost. Our findings will reduce uncertainties in the magnitude and timing of the carbon-climate feedback from the

  20. Succession Stages of Tundra Plant Communities Following Wildfire Disturbance in Arctic Alaska

    NASA Astrophysics Data System (ADS)

    Breen, A. L.; Hollingsworth, T. N.; Mack, M. C.; Jones, B. M.

    2015-12-01

    Rapid climate change is affecting climate-sensitive disturbance regimes throughout the world. In particular, the impacts of climate change on Arctic disturbance regimes are poorly understood because landscape-scale disturbances are infrequent or occur in remote localities. Wildfire in Arctic Alaska is presently limited by ignition source and favorable burn weather. With rapid climate change, a lengthening growing season, and subsequent increase in plant biomass and productivity, wildfire frequency and annual area burned in tundra ecosystems is expected to increase over the next century. Yet, post-fire tundra vegetation succession is inadequately characterized except at a few point locations. We identify succession stages of tussock tundra communities following wildfire using a chronosequence of 65 relevés in 10 tundra fire scars (1971-2011) and nearby unburned tundra from sites on the Seward Peninsula and northern foothills of the Brooks Range. We used the Braun-Blanquét approach to classify plant communities, and applied nonmetric multidimentional scaling (NMDS) to identify ecological gradients underlying community differentiation. The ordination revealed a clear differentiation between unburned and burned tundra communities. Ecological gradients, reflected by ordination axes, correspond to fire history (e.g., time since last fire, number of times burned, burn severity) and a complex productivity gradient. Post-fire species richness is less than unburned tundra; primarily reflected as a decrease in lichen species and turnover of bryophyte species immediately post-fire. Species richness of grasses increases post-fire and is greatest in communities that burned more than once in the past 30 years. Shrub cover and total aboveground biomass are greatest in repeat burn sites. We review and discuss our results focusing on the implications of a changing tundra fire regime, its effect on vegetation succession trajectories, and subsequent rates of carbon sequestration and

  1. The Tundra is a Net Source of CO2 Measured by Autochambers and Eddy Covariance Techniques During Five Years in a Site With Permafrost Thawing.

    NASA Astrophysics Data System (ADS)

    Celis, G.; Mauritz, M.; Bracho, R. G.; Salmon, V. G.; Webb, E.; Hutchings, J. A.; Natali, S.; Crummer, K. G.; Schuur, E.; Schaedel, C.

    2015-12-01

    Current and future warming of high latitude tundra ecosystems will play an important role in climate change through feedbacks to the global carbon (C) cycle. Long-term observational and experimental studies are pivotal for detecting and understanding changes in the coming decades. Yet studies of the C feedbacks from observational studies and manipulative experiments made on tundra plant communities often have significantly different conclusions with regards to impacts of warming on the ecosystem. Comparing results from these two study types, however, often involves integrating CO2 flux measurements that were collected on different spatial scales using a variety of methods. The process of data assimilation for landscape level analysis is often complicated by the fact that many projects only utilize one method for measuring CO2 fluxes at a given site. This study compares five years of C dynamics in a moist acidic tundra from control plots in a manipulative warming experiment (CiPEHR - plot-scale) and landscape-level natural permafrost thaw gradient (Gradient - Eddy covariance) observations all within a 1km distance from each other. We found net ecosystem exchange (NEE) to be an annual net source of carbon using both methods (Gradient 12.3 - 125.6 g CO2-C m-2 and CiPEHR warming manipulation 80.2 - 175.8 g CO2-C m-2). The differences between sites were biggest in the first three years of observation, and can be explained by lower growing season gross primary production (GPP - first three years) from the manipulation (CiPEHR), and lower ecosystem respiration (Reco) from CiPEHR in the first year only. Suppressed GPP and Reco could be from the impact of experimental setup (chamber soil collars - root damage), which lowered the plant community's capacity to fix C, but recovered within three years. This warrants caution of making generalization of short-term experiments in the tundra and more research is needed evaluating coupling of belowground and aboveground C dynamics.

  2. The effect of silver nanoparticles on seasonal change in arctic tundra bacterial and fungal assemblages.

    PubMed

    Kumar, Niraj; Palmer, Gerald R; Shah, Vishal; Walker, Virginia K

    2014-01-01

    The impact of silver nanoparticles (NPs) and microparticles (MPs) on bacterial and fungal assemblages was studied in soils collected from a low arctic site. Two different concentrations (0.066% and 6.6%) of Ag NPs and Ag MPs were tested in microcosms that were exposed to temperatures mimicking a winter to summer transition. Toxicity was monitored by differential respiration, phospholipid fatty acid analysis, polymerase chain reaction-denaturing gradient gel electrophoresis and DNA sequencing. Notwithstanding the effect of Ag MPs, nanosilver had an obvious, additional impact on the microbial community, underscoring the importance of particle size in toxicity. This impact was evidenced by levels of differential respiration in 0.066% Ag NP-treated soil that were only half that of control soils, a decrease in signature bacterial fatty acids, and changes in both richness and evenness in bacterial and fungal DNA sequence assemblages. Prominent after Ag NP-treatment were Hypocreales fungi, which increased to 70%, from only 1% of fungal sequences under control conditions. Genera within this Order known for their antioxidant properties (Cordyceps/Isaria) dominated the fungal assemblage after NP addition. In contrast, sequences attributed to the nitrogen-fixing Rhizobiales bacteria appeared vulnerable to Ag NP-mediated toxicity. This combination of physiological, biochemical and molecular studies clearly demonstrate that Ag NPs can severely disrupt the natural seasonal progression of tundra assemblages. PMID:24926877

  3. The Effect of Silver Nanoparticles on Seasonal Change in Arctic Tundra Bacterial and Fungal Assemblages

    PubMed Central

    Kumar, Niraj; Palmer, Gerald R.; Shah, Vishal; Walker, Virginia K.

    2014-01-01

    The impact of silver nanoparticles (NPs) and microparticles (MPs) on bacterial and fungal assemblages was studied in soils collected from a low arctic site. Two different concentrations (0.066% and 6.6%) of Ag NPs and Ag MPs were tested in microcosms that were exposed to temperatures mimicking a winter to summer transition. Toxicity was monitored by differential respiration, phospholipid fatty acid analysis, polymerase chain reaction-denaturing gradient gel electrophoresis and DNA sequencing. Notwithstanding the effect of Ag MPs, nanosilver had an obvious, additional impact on the microbial community, underscoring the importance of particle size in toxicity. This impact was evidenced by levels of differential respiration in 0.066% Ag NP-treated soil that were only half that of control soils, a decrease in signature bacterial fatty acids, and changes in both richness and evenness in bacterial and fungal DNA sequence assemblages. Prominent after Ag NP-treatment were Hypocreales fungi, which increased to 70%, from only 1% of fungal sequences under control conditions. Genera within this Order known for their antioxidant properties (Cordyceps/Isaria) dominated the fungal assemblage after NP addition. In contrast, sequences attributed to the nitrogen-fixing Rhizobiales bacteria appeared vulnerable to Ag NP-mediated toxicity. This combination of physiological, biochemical and molecular studies clearly demonstrate that Ag NPs can severely disrupt the natural seasonal progression of tundra assemblages. PMID:24926877

  4. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils

    SciTech Connect

    Lipson, David A.; Raab, Theodore K.; Parker, Melanie; Kelley, Scott T.; Brislawn, Colin J.; Jansson, Janet K.

    2015-07-21

    This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes, dominated by fermenters (Bacteroidetes and Firmicutes).

  5. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils

    SciTech Connect

    Lipson, David A.; Raab, Theodore K.; Parker, Melanie; Kelley, Scott T.; Brislawn, Colin J.; Jansson, Janet K.

    2015-08-01

    Summary This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes,

  6. Fungi benefit from two decades of increased nutrient availability in tundra heath soil.

    PubMed

    Rinnan, Riikka; Michelsen, Anders; Bååth, Erland

    2013-01-01

    If microbial degradation of carbon substrates in arctic soil is stimulated by climatic warming, this would be a significant positive feedback on global change. With data from a climate change experiment in Northern Sweden we show that warming and enhanced soil nutrient availability, which is a predicted long-term consequence of climatic warming and mimicked by fertilization, both increase soil microbial biomass. However, while fertilization increased the relative abundance of fungi, warming caused only a minimal shift in the microbial community composition based on the phospholipid fatty acid (PLFA) and neutral lipid fatty acid (NLFA) profiles. The function of the microbial community was also differently affected, as indicated by stable isotope probing of PLFA and NLFA. We demonstrate that two decades of fertilization have favored fungi relative to bacteria, and increased the turnover of complex organic compounds such as vanillin, while warming has had no such effects. Furthermore, the NLFA-to-PLFA ratio for (13)C-incorporation from acetate increased in warmed plots but not in fertilized ones. Thus, fertilization cannot be used as a proxy for effects on warming in arctic tundra soils. Furthermore, the different functional responses suggest that the biomass increase found in both fertilized and warmed plots was mediated via different mechanisms.

  7. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils.

    PubMed

    Lipson, David A; Raab, Theodore K; Parker, Melanie; Kelley, Scott T; Brislawn, Colin J; Jansson, Janet

    2015-08-01

    This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes, dominated by fermenters (Bacteroidetes and Firmicutes).

  8. The effect of silver nanoparticles on seasonal change in arctic tundra bacterial and fungal assemblages.

    PubMed

    Kumar, Niraj; Palmer, Gerald R; Shah, Vishal; Walker, Virginia K

    2014-01-01

    The impact of silver nanoparticles (NPs) and microparticles (MPs) on bacterial and fungal assemblages was studied in soils collected from a low arctic site. Two different concentrations (0.066% and 6.6%) of Ag NPs and Ag MPs were tested in microcosms that were exposed to temperatures mimicking a winter to summer transition. Toxicity was monitored by differential respiration, phospholipid fatty acid analysis, polymerase chain reaction-denaturing gradient gel electrophoresis and DNA sequencing. Notwithstanding the effect of Ag MPs, nanosilver had an obvious, additional impact on the microbial community, underscoring the importance of particle size in toxicity. This impact was evidenced by levels of differential respiration in 0.066% Ag NP-treated soil that were only half that of control soils, a decrease in signature bacterial fatty acids, and changes in both richness and evenness in bacterial and fungal DNA sequence assemblages. Prominent after Ag NP-treatment were Hypocreales fungi, which increased to 70%, from only 1% of fungal sequences under control conditions. Genera within this Order known for their antioxidant properties (Cordyceps/Isaria) dominated the fungal assemblage after NP addition. In contrast, sequences attributed to the nitrogen-fixing Rhizobiales bacteria appeared vulnerable to Ag NP-mediated toxicity. This combination of physiological, biochemical and molecular studies clearly demonstrate that Ag NPs can severely disrupt the natural seasonal progression of tundra assemblages.

  9. Bacillamides from a hypersaline microbial mat bacterium.

    PubMed

    Socha, Aaron M; Long, Richard A; Rowley, David C

    2007-11-01

    Chemical studies of a Bacillus endophyticus isolated from a Bahamian hypersaline microbial mat led to the isolation of bacillamides B and C, new tryptamide thiazole metabolites. Bioassay-guided fractionation using a HPLC-UV-MS bioassay technique enabled the detection of these trace fermentation products, and their total structures were elucidated by combined spectroscopic techniques.

  10. Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats

    NASA Technical Reports Server (NTRS)

    Ruff-Roberts, A. L.; Kuenen, J. G.; Ward, D. M.

    1994-01-01

    Oligodeoxynucleotide hybridization probes were developed to complement specific regions of the small subunit (SSU) rRNA sequences of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria, which inhabit hot spring microbial mats. The probes were used to investigate the natural distribution of SSU rRNAs from these species in mats of Yellowstone hot springs of different temperatures and pHs as well as changes in SSU rRNA distribution resulting from 1-week in situ shifts in temperature, pH, and light intensity. Synechococcus lividus Y-7c-s SSU rRNA was detected only in the mat of a slightly acid spring, from which it may have been initially isolated, or when samples from a more alkaline spring were incubated in the more acid spring. Chloroflexus aurantiacus Y-400-fl SSU rRNA was detected only in a high-temperature mat sample from the alkaline Octopus Spring or when lower-temperature samples from this mat were incubated at the high-temperature site. SSU rRNAs of uncultivated species were more widely distributed. Temperature distributions and responses to in situ temperature shifts suggested that some of the uncultivated cyanobacteria might be adapted to high-, moderate-, and low-temperature ranges whereas an uncultivated Chloroflexus-like bacterium appears to have broad temperature tolerance. SSU rRNAs of all uncultivated species inhabiting a 48 to 51 degrees C Octopus Spring mat site were most abundant in the upper 1 mm and were not detected below a 2.5-to 3.5-mm depth, a finding consistent with their possible phototrophic nature. However, the effects of light intensity reduction on these SSU rRNAs were variable, indicating the difficulty of demonstrating a phototrophic phenotype in light reduction experiments.

  11. Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats.

    PubMed Central

    Ruff-Roberts, A L; Kuenen, J G; Ward, D M

    1994-01-01

    Oligodeoxynucleotide hybridization probes were developed to complement specific regions of the small subunit (SSU) rRNA sequences of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria, which inhabit hot spring microbial mats. The probes were used to investigate the natural distribution of SSU rRNAs from these species in mats of Yellowstone hot springs of different temperatures and pHs as well as changes in SSU rRNA distribution resulting from 1-week in situ shifts in temperature, pH, and light intensity. Synechococcus lividus Y-7c-s SSU rRNA was detected only in the mat of a slightly acid spring, from which it may have been initially isolated, or when samples from a more alkaline spring were incubated in the more acid spring. Chloroflexus aurantiacus Y-400-fl SSU rRNA was detected only in a high-temperature mat sample from the alkaline Octopus Spring or when lower-temperature samples from this mat were incubated at the high-temperature site. SSU rRNAs of uncultivated species were more widely distributed. Temperature distributions and responses to in situ temperature shifts suggested that some of the uncultivated cyanobacteria might be adapted to high-, moderate-, and low-temperature ranges whereas an uncultivated Chloroflexus-like bacterium appears to have broad temperature tolerance. SSU rRNAs of all uncultivated species inhabiting a 48 to 51 degrees C Octopus Spring mat site were most abundant in the upper 1 mm and were not detected below a 2.5-to 3.5-mm depth, a finding consistent with their possible phototrophic nature. However, the effects of light intensity reduction on these SSU rRNAs were variable, indicating the difficulty of demonstrating a phototrophic phenotype in light reduction experiments. Images PMID:11536630

  12. Characterization of Phototrophic Purple Nonsulfur Bacteria Forming Colored Microbial Mats in a Swine Wastewater Ditch

    PubMed Central

    Okubo, Yoko; Futamata, Hiroyuki; Hiraishi, Akira

    2006-01-01

    The community structure of pink-colored microbial mats naturally occurring in a swine wastewater ditch was studied by culture-independent biomarker and molecular methods as well as by conventional cultivation methods. The wastewater in the ditch contained acetate and propionate as the major carbon nutrients. Thin-section electron microscopy revealed that the microbial mats were dominated by rod-shaped cells containing intracytoplasmic membranes of the lamellar type. Smaller numbers of oval cells with vesicular internal membranes were also found. Spectroscopic analyses of the cell extract from the biomats showed the presence of bacteriochlorophyll a and carotenoids of the spirilloxanthin series. Ubiquinone-10 was detected as the major quinone. A clone library of the photosynthetic gene, pufM, constructed from the bulk DNA of the biomats showed that all of the clones were derived from members of the genera Rhodobacter and Rhodopseudomonas. The dominant phototrophic bacteria from the microbial mats were isolated by cultivation methods and identified as being of the genera Rhodobacter and Rhodopseudomonas by studying 16S rRNA and pufM gene sequence information. Experiments of oxygen uptake with lower fatty acids revealed that the freshly collected microbial mats and the Rhodopseudomonas isolates had a wider spectrum of carbon utilization and a higher affinity for acetate than did the Rhodobacter isolates. These results demonstrate that the microbial mats were dominated by the purple nonsulfur bacteria of the genera Rhodobacter and Rhodopseudomonas, and the bioavailability of lower fatty acids in wastewater is a key factor allowing the formation of visible microbial mats with these phototrophs. PMID:16957249

  13. Climate Variations and Alaska Tundra Vegetation Productivity Declines in Spring

    NASA Astrophysics Data System (ADS)

    Bhatt, U. S.; Walker, D. A.; Bieniek, P.; Raynolds, M. K.; Epstein, H. E.; Comiso, J. C.; Pinzon, J. E.; Tucker, C. J.

    2015-12-01

    While sea ice has continued to decline, vegetation productivity increases have declined particularly during spring in Alaska as well as many parts of the Arctic tundra. To understand the processes behind these features we investigate spring climate variations that includes temperature, circulation patterns, and snow cover to determine how these may be contributing to spring browning. This study employs remotely sensed weekly 25-km sea ice concentration, weekly surface temperature, and bi-weekly NDVI from 1982 to 2014. Maximum NDVI (MaxNDVI, Maximum Normalized Difference Vegetation Index), Time Integrated NDVI (TI-NDVI), Summer Warmth Index (SWI, sum of degree months above freezing during May-August), atmospheric reanalysis data, dynamically downscaled climate data, meteorological station data, and snow water equivalent (GlobSnow, assimilated snow data set). We analyzed the data for the full period (1982-2014) and for two sub-periods (1982-1998 and 1999-2014), which were chosen based on the declining Alaska SWI since 1998. MaxNDVI has increased from 1982-2014 over most of the Arctic but has declined from 1999 to 2014 southwest Alaska. TI-NDVI has trends that are similar to those for MaxNDVI for the full period but display widespread declines over the 1999-2014 period. Therefore, as the MaxNDVI has continued to increase overall for the Arctic, TI-NDVI has been declining since 1999 and these declines are particularly noteworthy during spring in Alaska. Spring declines in Alaska have been linked to increased spring snow cover that can delay greenup (Bieniek et al. 2015) but recent ground observations suggest that after an initial warming and greening, late season freezing temperature are damaging the plants. The late season freezing temperature hypothesis will be explored with meteorological climate/weather data sets for Alaska tundra regions. References P.A. Bieniek, US Bhatt, DA Walker, MK Raynolds, JC Comiso, HE Epstein, JE Pinzon, CJ Tucker, RL Thoman, H Tran, N M

  14. Remotely Sensing Tundra Fire Impacts Using InSAR

    NASA Astrophysics Data System (ADS)

    Liu, L.; Schaefer, K. M.; Jafarov, E. E.; Williams, C. A.; Rogan, J.; Zebker, H. A.

    2013-12-01

    Fire is a major disturbance affecting the arctic tundra and boreal forests, with a significant impacts on the ecosystem, soil hydrology, carbon cycling, and permafrost. The increasing trend in frequency and severity of large fires since 1980, associated with progressively drier conditions, is expected to continue and lead to still greater impacts. In this study, we explore the use of Interferometric Synthetic Aperture Radar (InSAR) to map and quantify several results of tundra fires, including fire severity, the increase in permafrost active layer thickness (ALT), and changes in organic layer thickness. Here we present as an example observations of the Anaktuvuk River fire on the North Slope of Alaska, which burned over 1,000 km2 of tundra in the summer of 2007. Fire causes an abrupt change in the surface scattering characteristics and results in a large drop in InSAR coherence. The magnitude of coherence loss is proportional to the amount of vegetation burned, and thus fire severity. Coherence between two PALSAR images taken by the Japanese ALOS satellite before and after the Anaktuvuk River fire shows a spatial pattern consistent with a map of burn severity based on optical MODIS images using differential Normalized Burn Ratio. Additionally, we used InSAR to calculate the seasonal ground subsidence for the 2006 and 2009 thaw seasons representing pre- and post-fire conditions, and estimated the change in ALT using a retrieval algorithm. Our results are consistent with the 8 to 24 cm ALT increases derived from in situ probing measurements, which we relate to the change in the organic layer thickness due to the fire. Our results illustrate the potential of InSAR for remote sensing of fire impacts in Arctic regions. (a) Burn severity for the Anaktuvuk Rivre Fire based on differential Normalized Burn Ratio (dNBR) from MODIS images. (b) Interferometric coherence loss due to the fire. Spatial mean has been subtracted. Negative values (yellow and red colors) indicate

  15. Method for production of carbon nanofiber mat or carbon paper

    SciTech Connect

    Naskar, Amit K.

    2015-08-04

    Method for the preparation of a non-woven mat or paper made of carbon fibers, the method comprising carbonizing a non-woven mat or paper preform (precursor) comprised of a plurality of bonded sulfonated polyolefin fibers to produce said non-woven mat or paper made of carbon fibers. The preforms and resulting non-woven mat or paper made of carbon fiber, as well as articles and devices containing them, and methods for their use, are also described.

  16. Lipid Biomarkers for a Hypersaline Microbial Mat Community

    NASA Technical Reports Server (NTRS)

    Jahnke, Linda L.; Embaye, Tsege; Turk, Kendra A.

    2003-01-01

    The use of lipid biomarkers and their carbon isotopic compositions are valuable tools for establishing links to ancient microbial ecosystems. As witnessed by the stromatolite record, benthic microbial mats grew in shallow water lagoonal environments where microorganisms had virtually no competition apart from the harsh conditions of hypersalinity, desiccation and intense light. Today, the modern counterparts of these microbial ecosystems find appropriate niches in only a few places where extremes eliminate eukaryotic grazers. Answers to many outstanding questions about the evolution of microorganisms and their environments on early Earth are best answered through study of these extant analogs. Lipids associated with various groups of bacteria can be valuable biomarkers for identification of specific groups of microorganisms both in ancient organic-rich sedimentary rocks (geolipids) and contemporary microbial communities (membrane lipids). Use of compound specific isotope analysis adds additional refinement to the identification of biomarker source, so that it is possible to take advantage of the 3C-depletions associated with various functional groups of organisms (i.e. autotrophs, heterotrophs, methanotrophs, methanogens) responsible for the cycling of carbon within a microbial community. Our recent work has focused on a set of hypersaline evaporation ponds at Guerrero Negro, Baja California Sur, Mexico which support the abundant growth of Microcoleus-dominated microbial mats. Specific biomarkers for diatoms, cyanobacteria, archaea, green nonsulfur (GNS), sulfate reducing, and methanotrophic bacteria have been identified. Analyses of the ester-bound fatty acids indicate a highly diverse microbial community, dominated by photosynthetic organisms at the surface.

  17. Preparation of electrospun fiber mats using siloxane-containing vaterite and biodegradable polymer hybrids for bone regeneration.

    PubMed

    Fujikura, Kie; Lin, Sen; Nakamura, Jin; Obata, Akiko; Kasuga, Toshihiro

    2013-11-01

    An electrospun fiber mat using a new composite consisting of siloxane-containing vaterite (SiV) and poly(lactic-co-glycolic acid) (PLGA) (denoted by SiPLGVH) was prepared with the aim of applying it as a membrane for use in a guided bone regeneration (GBR) system. Another electrospun fiber mat using a previously described composite consisting of SiV and poly(L-lactic acid) (denoted by SiPVH) was also prepared as a comparative sample. SiPLG VH fiber mats showed superior results in terms of mechanical tensile properties and cellular behavior. Their elongation before failure was about eight times higher than that of SiPVH. The numbers of osteoblast-like cells that proliferated on the SiPLGVH fiber mats, regardless of the hydroxyapatite coating, were comparable to that of SiPVH. The cells spread more, two dimensionally, on the SiPLGVH fiber mats, since the pores between fibers were narrowed down because of swelling of the PLGA matrix during cell culture. This two-dimensional cellular proliferation quality on the SiPLGVH fiber mats is expected to be suitable for materials used in GBR, leading to control of infiltration of the soft tissue and great tissue integration with the surrounding tissue.

  18. BRDF characteristics of tundra vegetation communities in Yamal, Western Siberia

    NASA Astrophysics Data System (ADS)

    Buchhorn, Marcel; Heim, Birgit; Walker, Donald A. Skip; Epstein, Howard; Leibman, Marina

    2013-04-01

    Satellite data from platforms with pointing capabilities (CHRIS/Proba, RapidEye) or from sensors with wide swath (AVHRR, MODIS, MERIS) is influenced by the bidirectional reflectance distribution function (BRDF). This effect can cause significant changes in the measured spectral surface reflectance depending on the solar illumination geometry and sensor viewing conditions. The Environmental Mapping and Analysis Program (EnMAP), a German hyperspectral mission with expected launch in 2016, will provide high spectral resolution observations with a ground sampling distance of 30 meters. Since the EnMAP sensor has pointing capabilities, both spectral and directional reflection characteristics need to be taken into account for the algorithms development for vegetation parameters. The 'hyperspectral method development for Arctic VEGetation biomes' (hy-Arc-VEG) project is part of the national preparation program for the EnMAP mission. Within the EnMAP projcect hy-Arc-VEG we developed a portable field spectro-goniometer, named ManTIS (Manual Transportable Instrument for Spherical BRDF observations), for the in-situ measurements of anisotropic effects of tundra surfaces (national and international patent pending - DE 102011117713.6). The goniometer was designed for field use in difficult as well as challenging terrain and climate. It is therefore of low weight, without electrical devices and weatherproof. It can be disassembled and packed into small boxes for transport. The current off-nadir viewing capacity is matched to the EnMAP sensor configuration (up to 30°). We carried out spectral field and goniometer measurements on the joint YAMAL 2011 expedition (RU-US-DE) organized by the Earth-Cryosphere Institute (ECI) in August 2011 on the Yamal Peninsula, northwestern Siberia, Russia. The field goniometer measurements (conducted under varying sun zenith angles) as well as field spectro-radiometrical measurements were carried out at the NASA Yamal Land Cover/Land Use Change

  19. From Tropics to Tundra: Global Convergence in Plant Functioning

    NASA Astrophysics Data System (ADS)

    Reich, Peter B.; Walters, Michael B.; Ellsworth, David S.

    1997-12-01

    Despite striking differences in climate, soils, and evolutionary history among diverse biomes ranging from tropical and temperate forests to alpine tundra and desert, we found similar interspecific relationships among leaf structure and function and plant growth in all biomes. Our results thus demonstrate convergent evolution and global generality in plant functioning, despite the enormous diversity of plant species and biomes. For 280 plant species from two global data sets, we found that potential carbon gain (photosynthesis) and carbon loss (respiration) increase in similar proportion with decreasing leaf life-span, increasing leaf nitrogen concentration, and increasing leaf surface area-to-mass ratio. Productivity of individual plants and of leaves in vegetation canopies also changes in constant proportion to leaf life-span and surface area-to-mass ratio. These global plant functional relationships have significant implications for global scale modeling of vegetation-atmosphere CO2 exchange.

  20. Spatial Scale Gaps of Turbulent Heat Fluxes in Arctic Tundra

    NASA Astrophysics Data System (ADS)

    Fochesatto, G. J.; Gruber, M. A.; Cristóbal-Rosselló, J.; Edgar, C.; Kane, D. L.

    2013-12-01

    Large-area averaged turbulent fluxes of scalars (heat and carbon) play an important role in climate and ecosystem models by resolving the scale-gap closure defining top-down and bottom-up scaling schemes. Large Aperture Scintillometer (LAS) measurement of the refractive index structure function (CN2) allows for indirect retrieval of area-averaged (>km2) atmospheric boundary layer sensible heat fluxes. In this work we report observations of LAS in Arctic tundra at Imnavait Creek Basin. LAS-derived fluxes are compared to more localized measurements of heat fluxes obtained by an eddy-covariance (EC) system distributed across the basin. This article discusses the divergence observed in the temporal series of LAS-fluxes in comparison to spatially distributed measurements of EC-fluxes. The comparison stresses the role of the Arctic ABL structure, terrain-flow characteristics and radiative fluxes in the overall spatial representation of fluxes.

  1. Potential responses of tundra ecosystems to perturbations from energy development. Part I. Final report

    SciTech Connect

    Oechel, W.C.

    1986-01-01

    This report discusses research conducted to understand the effects of energy development on changes in nutrient status, changes in water flow and water availability, and changes in surface energy balance of the arctic tundra. (ACR)

  2. Transformation of nitrogen compounds in the tundra soils of Northern Fennoscandia

    NASA Astrophysics Data System (ADS)

    Maslov, M. N.; Makarov, M. I.

    2016-07-01

    The transformation of organic nitrogen compounds in the soils of tundra ecosystems of Northern Fennoscandia has been studied under laboratory and natural conditions. Tundra soils contain significant reserves of total nitrogen, but they are poor in its extractable mineral and organic forms. The potential rates of the net mineralization and net immobilization of nitrogen by microorganisms vary among the soils and depend on the C: N ratio in the extractable organic matter and microbial biomass of soil. Under natural conditions, the rate of nitrogen net mineralization is lower than the potential rate determined under laboratory conditions by 6-25 times. The incubation of tundra soils in the presence of plants does not result in the accumulation of mineral nitrogen compounds either in the soil or in microbial biomass. This confirms the high competitive capacity of plants under conditions of limited nitrogen availability in tundra ecosystems.

  3. Quantifying the historic and future distribution of fire in Alaskan tundra ecosystems

    NASA Astrophysics Data System (ADS)

    Young, A. M.; Higuera, P. E.; Duffy, P. A.

    2012-12-01

    During the past 60 years fire has been relatively rare and small in size within tundra ecosystems. However, historical observations and paleoecological evidence indicates that fire regimes vary widely across Alaskan tundra, in both space and time. These lines of evidence suggest that fire occupies a highly specified niche or ecological space in Alaskan tundra, which may change significantly with future climate warming. The objective of this research was to quantify the relationships between fire occurrence and different seasonal climate variables, and to begin to make inferences about future distributions of fire across the tundra landscape. The results of this research will ultimately contribute to the goal of summarizing the linkages that exist among climate, vegetation, and fire in the historical record, and for making predictions concerning fire disturbance in tundra ecosystems throughout the next century. Historic tundra fires occurred non-randomly across space, and a relationship exists between fire occurrence and warm, dry climates. We quantified this relationship with generalized boosting models (GBM) using datasets of downscaled temperature and precipitation (2 km, 1971-2000), and historic records of tundra area burned (1950-2010). The GBM used six seasonal climate variables, focused on growing season temperature and precipitation, to predict the probability of fire occurrence over the 1950-2010 time period. To understand implications of these historic relationships given ongoing climate warming, we constructed future climatologies of temperature and precipitation for the five GCMs which performed best in Alaska under the IPCC AR4 A1B (middle-of-the-road) emissions scenario for the time period 2021-2050. The GBM performed well predicting the observed spatial distribution of tundra area burned, capturing key regions which experienced the most fire activity from 1950-2010. The mean temperature of the warmest month (MeanMaxTemp) was the most influential

  4. Climate feedbacks at the tundra-taiga interface.

    PubMed

    Harding, Richard; Kuhry, Peter; Christensen, Torben R; Sykes, Martin T; Dankers, Rutger; van der Linden, Sandra

    2002-08-01

    Feedbacks, or internal interactions, play a crucial role in the climate system. Negative feedback will reduce the impact of an external perturbation, a positive feedback will amplify the effect and could lead to an unstable system. Many of the feedbacks found in the climate system are positive; thus, for example, increasing CO2 levels will increase temperature, reduce the snow cover, increase the absorption of radiation and hence increase temperature further. The most obvious feedbacks, such as the snow example quoted above, are already included within our models of the climate and earth system. Others, such as the impact of increasing forest cover due to global warming, are only just being included. Others, such as, the impact of global warming on the northern peatlands and the impact of freshwater flows on the Arctic Ocean are not yet considered. The contrast in surface characteristics between low tundra vegetation to high taiga forest is considerable. The contrast is greatest in the winter, when the tundra is snow covered but the trees of the taiga protrude through the snow pack, and is probably the greatest contrast found on the land surface anywhere. This variation causes massive changes in the energy fluxes at the surface and hence the temperature conditions on the ground and within the atmosphere. There will be large resultant changes in the vegetation development, the carbon fluxes, the permafrost and the hydrology. The Arctic is already experiencing change and it is essential for us to understand the basic processes, and how these interact, to be confident of our predictions of environmental change in the future.

  5. Fourfold higher tundra volatile emissions due to arctic summer warming

    NASA Astrophysics Data System (ADS)

    Lindwall, Frida; Schollert, Michelle; Michelsen, Anders; Blok, Daan; Rinnan, Riikka

    2016-03-01

    Biogenic volatile organic compounds (BVOCs), which are mainly emitted by vegetation, may create either positive or negative climate forcing feedbacks. In the Subarctic, BVOC emissions are highly responsive to temperature, but the effects of climatic warming on BVOC emissions have not been assessed in more extreme arctic ecosystems. The Arctic undergoes rapid climate change, with air temperatures increasing at twice the rate of the global mean. Also, the amount of winter precipitation is projected to increase in large areas of the Arctic, and it is unknown how winter snow depth affects BVOC emissions during summer. Here we examine the responses of BVOC emissions to experimental summer warming and winter snow addition—each treatment alone and in combination—in an arctic heath during two growing seasons. We observed a 280% increase relative to ambient in BVOC emissions in response to a 4°C summer warming. Snow addition had minor effects on growing season BVOC emissions after one winter but decreased BVOC emissions after the second winter. We also examined differences between canopy and air temperatures and found that the tundra canopy surface was on average 7.7°C and maximum 21.6°C warmer than air. This large difference suggests that the tundra surface temperature is an important driver for emissions of BVOCs, which are temperature dependent. Our results demonstrate a strong response of BVOC emissions to increasing temperatures in the Arctic, suggesting that emission rates will increase with climate warming and thereby feed back to regional climate change.

  6. Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

    NASA Technical Reports Server (NTRS)

    Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

    2001-01-01

    Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended

  7. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.

    PubMed

    Johnston, Eric R; Rodriguez-R, Luis M; Luo, Chengwei; Yuan, Mengting M; Wu, Liyou; He, Zhili; Schuur, Edward A G; Luo, Yiqi; Tiedje, James M; Zhou, Jizhong; Konstantinidis, Konstantinos T

    2016-01-01

    How soil microbial communities contrast with respect to taxonomic and functional composition within and between ecosystems remains an unresolved question that is central to predicting how global anthropogenic change will affect soil functioning and services. In particular, it remains unclear how small-scale observations of soil communities based on the typical volume sampled (1-2 g) are generalizable to ecosystem-scale responses and processes. This is especially relevant for remote, northern latitude soils, which are challenging to sample and are also thought to be more vulnerable to climate change compared to temperate soils. Here, we employed well-replicated shotgun metagenome and 16S rRNA gene amplicon sequencing to characterize community composition and metabolic potential in Alaskan tundra soils, combining our own datasets with those publically available from distant tundra and temperate grassland and agriculture habitats. We found that the abundance of many taxa and metabolic functions differed substantially between tundra soil metagenomes relative to those from temperate soils, and that a high degree of OTU-sharing exists between tundra locations. Tundra soils were an order of magnitude less complex than their temperate counterparts, allowing for near-complete coverage of microbial community richness (~92% breadth) by sequencing, and the recovery of 27 high-quality, almost complete (>80% completeness) population bins. These population bins, collectively, made up to ~10% of the metagenomic datasets, and represented diverse taxonomic groups and metabolic lifestyles tuned toward sulfur cycling, hydrogen metabolism, methanotrophy, and organic matter oxidation. Several population bins, including members of Acidobacteria, Actinobacteria, and Proteobacteria, were also present in geographically distant (~100-530 km apart) tundra habitats (full genome representation and up to 99.6% genome-derived average nucleotide identity). Collectively, our results revealed that

  8. Astronaut Thomas Mattingly performs EVA during Apollo 16 transearth coast

    NASA Technical Reports Server (NTRS)

    1972-01-01

    Astronaut Thomas K. Mattingly II, command module pilot of the Apollo 16 lunar landing mission, performs extravehicular activity (EVA) during the Apollo 16 transearth coast. mattingly is assisted by Astronaut Charles M. Duke Jr., lunar module pilot. Mattingly inspected the SIM bay of the Service Module, and retrieved film from the Mapping and Panoramic cameras. Mattingly is wearing the helmet of Astronaut John W. Young, commander. The helmet's lunar extravehicular visor assembly helped protect Mattingly's eyes frmo the bright sun. This view is a frame from motion picture film exposed by a 16mm Maurer camera.

  9. Multi-Sensor Approach for Assessing the Taiga-Tundra Boundary

    NASA Technical Reports Server (NTRS)

    Ranson, K. J.; Sun, G.; Kharuk, V. I.; Kovacs, K.

    2003-01-01

    Monitoring the dynamics of the tundra-taiga boundary is critical for our understanding of the causes and consequences of the changes in this area. Because of its inaccessibility, remote sensing data will play an important role. In this study we examined the use of several remote sensing techniques for identifying the existing tundra-taiga ecotone. These include Landsat, MISR and RADARSAT data. High-resolution IKONOS images were used for local ground truth. It was found that on Landsat ETM+ summer images, reflectance from tundra and taiga at band 4 (NIR) is similar, but different at other bands such as red, and MIR bands. When the incidence angle is small, C-band HH-pol backscattering coefficients from both tundra and taiga are relatively high. The backscattering from tundra targets decreases faster than taiga targets when the incidence angle increases, because the tundra targets look smoother than taiga. Because of the shading effect of the vegetation, the MISR data, both multi-spectral data at nadir looking and multi-angle data at red and NIR bands, clearly show the transition zone.

  10. Fire behavior, weather, and burn severity of the 2007 anaktuvuk river tundra fire, North Slope, Alaska

    USGS Publications Warehouse

    Jones, B.; Kolden, C.; Jandt, R.; Abatzoglou, J.; Urban, F.; Arp, C.

    2009-01-01

    In 2007, the Anaktuvuk River Fire (ARF) became the largest recorded tundra fire on the North Slope of Alaska. The ARF burned for nearly three months, consuming more than 100,000 ha. At its peak in early September, the ARF burned at a rate of 7000 ha d-1. The conditions potentially responsible for this large tundra fire include modeled record high summer temperature and record low summer precipitation, a late-season high-pressure system located over the Beaufort Sea, extremely dry soil conditions throughout the summer, and sustained southerly winds during the period of vegetation senescence. Burn severity mapping revealed that more than 80% of the ARF burned at moderate to extreme severity, while the nearby Kuparuk River Fire remained small and burned at predominantly (80%) low severity. While this study provides information that may aid in the prediction of future large tundra fires in northern Alaska, the fact that three other tundra fires that occurred in 2007 combined to burn less than 1000 ha suggests site specific complexities associated with tundra fires on the North Slope, which may hamper the development of tundra fire forecasting models.

  11. Tundra ecosystems observed to be CO2 sources due to differential amplification of the carbon cycle.

    PubMed

    Belshe, E F; Schuur, E A G; Bolker, B M

    2013-10-01

    Are tundra ecosystems currently a carbon source or sink? What is the future trajectory of tundra carbon fluxes in response to climate change? These questions are of global importance because of the vast quantities of organic carbon stored in permafrost soils. In this meta-analysis, we compile 40 years of CO2 flux observations from 54 studies spanning 32 sites across northern high latitudes. Using time-series analysis, we investigated if seasonal or annual CO2 fluxes have changed over time, and whether spatial differences in mean annual temperature could help explain temporal changes in CO2 flux. Growing season net CO2 uptake has definitely increased since the 1990s; the data also suggest (albeit less definitively) an increase in winter CO2 emissions, especially in the last decade. In spite of the uncertainty in the winter trend, we estimate that tundra sites were annual CO2 sources from the mid-1980s until the 2000s, and data from the last 7 years show that tundra continue to emit CO2 annually. CO2 emissions exceed CO2 uptake across the range of temperatures that occur in the tundra biome. Taken together, these data suggest that despite increases in growing season uptake, tundra ecosystems are currently CO2 sources on an annual basis.

  12. NDVI as a predictor of canopy arthropod biomass in the Alaskan arctic tundra.

    PubMed

    Sweet, Shannan K; Asmus, Ashley; Rich, Matthew E; Wingfield, John; Gough, Laura; Boelman, Natalie T

    2015-04-01

    The physical and biological responses to rapid arctic warming are proving acute, and as such, there is a need to monitor, understand, and predict ecological responses over large spatial and temporal scales. The use of the normalized difference vegetation index (NDVI) acquired from airborne and satellite sensors addresses this need, as it is widely used as a tool for detecting and quantifying spatial and temporal dynamics of tundra vegetation cover, productivity, and phenology. Such extensive use of the NDVI to quantify vegetation characteristics suggests that it may be similarly applied to characterizing primary and secondary consumer communities. Here, we develop empirical models to predict canopy arthropod biomass with canopy-level measurements of the NDVI both across and within distinct tundra vegetation communities over four growing seasons in the Arctic Foothills region of the Brooks Range, Alaska, USA. When canopy arthropod biomass is predicted with the NDVI across all four growing seasons, our overall model that includes all four vegetation communities explains 63% of the variance in canopy arthropod biomass, whereas our models specific to each of the four vegetation communities explain 74% (moist tussock tundra), 82% (erect shrub tundra), 84% (riparian shrub tundra), and 87% (dwarf shrub tundra) of the observed variation in canopy arthropod biomass. Our field-based study suggests that measurements of the NDVI made from air- and spaceborne sensors may be able to quantify spatial and temporal variation in canopy arthropod biomass at landscape to regional scales.

  13. ChemMatCARS Data Archive

    DOE Data Explorer

    ChemMatCARS is a high-brilliance national synchrotron x-ray facility dedicated primarily to static and dynamic condensed matter chemistry and materials science. The scientific focus of the facility includes the study of surface and interfacial properties of liquids and solids as well as their bulk structure at atomic, molecular and mesoscopic length scales with high spatial and energy resolution. Experimental techniques supported by the facility include: 1) Liquid Surface X-ray Scattering; 2) Solid Surface X-ray Scattering; 3) Time-Resolved Crystallography; 4) Micro-Crystal Diffraction; 5) Small and Wide-angle X-ray Scattering. The data archive referenced here contains data for various components along the beamline within the First Optics Enclosure and is intended to be input or parameter data. See the Science Nuggets at http://cars9.uchicago.edu/chemmat/pages/nuggets.html for leads to some of the research conducted at the ChemMatCARS beamline.

  14. Bioflumology: Microbial mat growth in flumes

    NASA Astrophysics Data System (ADS)

    Airo, A.; Weigert, S.; Beck, C.

    2014-04-01

    The emergence of oxygenic photosynthesis resulted in a transformational change of Earth's geochemical cycles and the subsequent evolution of life. However, it remains vigorously debated when this metabolic ability had evolved in cyanobacteria. This is largely because studies of Archean microfossil morphology, molecular biomarkers, and isotopic characteristics are frequently ambiguous. However, the high degree of morphological similarities between modern photosynthetic and Archean fossil mats has been interpreted to indicate phototactic microbial behavior or oxygenic photosynthesis. In order to better evaluate the relationship between mat morphology and metabolism, we here present a laboratory set-up for conducting month-long experiments in several sterilizable circular flumes designed to allow single-species cyanobacterial growth under adjustable fluid-flow conditions and protected from contamination.

  15. Microbial mats: an ecological niche for fungi

    PubMed Central

    Cantrell, Sharon A.; Duval-Pérez, Lisabeth

    2013-01-01

    Fungi were documented in tropical hypersaline microbial mats and their role in the degradation of complex carbohydrates (exopolymeric substance – EPS) was explored. Fungal diversity is higher during the wet season with Acremonium, Aspergillus, Cladosporium, and Penicillium among the more common genera. Diversity is also higher in the oxic layer and in young and transient mats. Enrichments with xanthan (a model EPS) show that without antibiotics (full community) degradation is faster than enrichments with antibacterial (fungal community) and antifungal (bacterial community) agents, suggesting that degradation is performed by a consortium of organisms (bacteria and fungi). The combined evidence from all experiments indicates that bacteria carried out approximately two-third of the xanthan degradation. The pattern of degradation is similar between seasons and layers but degradation is faster in enrichments from the wet season. The research suggests that fungi thrive in these hypersaline consortia and may participate in the carbon cycle through the degradation of complex carbohydrates. PMID:23577004

  16. The Changing Seasonality of Tundra Nutrient Cycling: Implications for Arctic Ecosystem Function

    NASA Astrophysics Data System (ADS)

    Weintraub, M. N.; Steltzer, H.; Sullivan, P.; Schimel, J.; Wallenstein, M. D.; Darrouzet-Nardi, A.; Segal, A. D.

    2011-12-01

    Arctic soils contain large stores of carbon (C) and may act as a significant CO2 source with warming. However, the key to understanding tundra soil processes is nitrogen (N), as both plant growth and decomposition are N limited. However, current models of tundra ecosystems assume that while N limits plant growth, C limits decomposition. In addition, N availability is strongly seasonal with relatively high concentrations early in the growing season followed by a pronounced crash. We need to understand the controls on this seasonality to predict responses to climate change, but there are multiple questions that need answers: 1) What causes the seasonality in N? 2) Does microbial activity switch seasonally between C and N limitation? 3) How will a lengthening of the growing season alter overall ecosystem C and N dynamics, as a result of differential extension of the periods before and after the nutrient crash? We hypothesized that microbial activity is C limited early in the growing season, when N availability is higher and root exudate C is unavailable, and that microbial activity becomes N limited in response to plant N uptake and immobilization stimulated by root C. To address these questions we are conducting an accelerated snow-melt X warming field experiment in an Alaskan moist acidic arctic tundra community, and following plant and soil dynamics. Changes in the timing of C and N interactions in the different treatments will enable us to develop an enhanced mechanistic understanding of why the nutrient crash occurs and what the implications are for a lengthening of the arctic growing season. In 2010 we successfully accelerated snowmelt by 4 days. Both earlier snowmelt and warming accelerated early season plant life history events, with a few exceptions. However, responses to the combined treatment could not always be predicted from single factor effects. End of season life history events occurred later in response to the treatments, again with a few exceptions

  17. Increasing shrub abundance and N addition in Arctic tundra affect leaf and root litter decomposition differently

    NASA Astrophysics Data System (ADS)

    McLaren, J.; van de Weg, M. J.; Shaver, G. R.; Gough, L.

    2013-12-01

    Changes in global climate have resulted in a ';greening' of the Arctic as the abundance of deciduous shrub species increases. Consequently, not only the living plant community, but also the litter composition changes, which in turn can affect carbon turnover patterns in the Arctic. We examined effects of changing litter composition (both root and leaf litter) on decomposition rates with a litter bag study, and specifically focused on the impact of deciduous shrub Betula nana litter on litter decomposition from two evergreen shrubs (Ledum palustre, and Vaccinium vitis-idaea) and one graminoid (Eriophorum vaginatum) species. Additionally, we investigated how decomposition was affected by nutrient availability by placing the litterbags in an ambient and a fertilized moist acidic tundra environment. Measurements were carried out seasonally over 2 years (after snow melt, mid-growing season, end growing season). We measured litter mass loss over time, as well as the respiration rates (standardized for temperature and moisture) and temperature sensitivity of litter respiration at the time of harvesting the litter bags. For leaves, Betula litter decomposed faster than the other three species, with Eriophorum leaves decomposing the slowest. This pattern was observed for both mass loss and litter respiration rates, although the differences in respiration became smaller over time. Surprisingly, combining Betula with any other species resulted in slower overall weight loss rates than would be predicted based on monoculture weight loss rates. This contrasted with litter respiration at the time of sampling, which showed a positive mixing effect of adding Betula leaf liter to the other species. Apparently, during the first winter months (September - May) Betula litter decomposition is negatively affected by mixing the species and this legacy can still be observed in the total mass loss results later in the year. For root litter there were fewer effects of species identity on root

  18. The effects of mats on back and leg fatigue.

    PubMed

    Kim, J Y; Stuart-Buttle, C; Marras, W S

    1994-02-01

    Prolonged standing is common in many industrial workplaces. It is also quite common for workers to complain of discomfort in the back and legs as a result of prolonged standing. Mats are often provided for the worker to relieve this fatigue. However, there is no quantitative evidence that these mats relieve leg and back fatigue. Five subjects were asked to stand on a concrete surface and two mat surfaces for prolonged periods of time. Spectral electromyographic analyses indicated that mats reduced localized muscle fatigue in the erector spinae muscle only. Furthermore, this fatigue reduction occurred only with the more compressible of the two mats tested. These results imply that localized muscular fatigue in the leg may not be relieved with 'anti-fatigue' mats, and some of these mats only benefit the back. PMID:15676945

  19. [Methanotrophs of the psychrophilic microbial community of the Russian Arctic tundra].

    PubMed

    Berestovskaia, Iu Iu; Vasil'eva, L V; Chestnykh, O V; Zavarzin, G A

    2002-01-01

    In tundra, at a low temperature, there exists a slowly developing methanotrophic community. Methane-oxidizing bacteria are associated with plants growing at high humidity, such as sedge and sphagnum; no methonotrophs were found in polytrichous and aulacomnious mosses and lichens, typical of more arid areas. The methanotrophic bacterial community inhabits definite soil horizons, from moss dust to peat formed from it. Potential ability of the methanotrophic community to oxidize methane at 5 degrees C enhances with the depth of the soil profile in spite of the decreasing soil temperature. The methanotrophic community was found to gradually adapt to various temperatures due to the presence of different methane-oxidizing bacteria in its composition. Depending on the temperature and pH, different methanotrophs occupy different econiches. Within a temperature range from 5 to 15 degrees C, three morphologically distinct groups of methanotrophs could be distinguished. At pH 5-7 and 5-15 degrees C, forms morphologically similar to Methylobacter psychrophilus predominated, whereas at the acidic pH 4-6 and 10-15 degrees C, bipolar cells typical of Methylocella palustris were mostly found. The third group of methanotrophic bacteria growing at pH 5-7 and 5-10 degrees C was represented by a novel methanotroph whole large coccoid cells had a thick mucous capsule. PMID:12244726

  20. Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra

    NASA Astrophysics Data System (ADS)

    Hicks Pries, Caitlin E.; Schuur, Edward A. G.; Natali, Susan M.; Crummer, K. Grace

    2016-02-01

    Old soil carbon (C) respired to the atmosphere as a result of permafrost thaw has the potential to become a large positive feedback to climate change. As permafrost thaws, quantifying old soil contributions to ecosystem respiration (Reco) and understanding how these contributions change with warming is necessary to estimate the size of this positive feedback. We used naturally occurring C isotopes (δ13C and Δ14C) to partition Reco into plant, young soil and old soil sources in a subarctic air and soil warming experiment over three years. We found that old soil contributions to Reco increased with soil temperature and Reco flux. However, the increase in the soil warming treatment was smaller than expected because experimentally warming the soils increased plant contributions to Reco by 30%. On the basis of these data, an increase in mean annual temperature from -5 to 0 °C will increase old soil C losses from moist acidic tundra by 35-55 g C m-2 during the growing season. The largest losses will probably occur where the plant response to warming is minimal.

  1. Commander Mattingly prepares meal on middeck

    NASA Technical Reports Server (NTRS)

    1982-01-01

    Commander Mattingly, wearing flight coveralls, opens beverage container using a pair of scissors in front of middeck lockers (covered with spacecrew supplies, meal tray assemblies, and additional food items). Continuous Flow Electrophoresis System (CFES) and control panel ML86B appear on port side wall. CFES is designed to separate biological materials according to their surface electrical charges as they pass through an electrical field.

  2. The Archaea of a Hypersaline Microbial Mat

    NASA Astrophysics Data System (ADS)

    Robertson, C.; Spear, J. R.; Pace, N. R.

    2006-12-01

    The overarching goal of this work is to describe and understand the organismal composition within the domain Archaea for the microbial ecosystem of a hypersaline microbial mat. Sea salt is crystallized by solar evaporation at North America's largest saltworks, the Exportadora de Sal, in Guerrero Negro, Baja California Sur. Sea water flows through a series of evaporative basins with an increase in salinity until saturation is reached and halite crystallization begins. Several of these ponds are underlined with thick microbial mats. To date, it has not been known what kinds of organisms comprise these complex microbial ecosystems. Here, we report a survey of the stratified microbial communities for the distribution of representatives of Archaea in layers of the mats. This survey uses molecular approaches, based on cloning and sequencing of SSU rRNA genes for phylogenetic analyses, to determine the nature and extent of archaeal diversity that constitute these ecosystems. We compiled an altogether new phylogenetic backbone for the domain Archaea and placed representative sequences from this hypersaline analysis onto that framework. Analyses to date indicate the ubiquitous dominance of uncultured organisms of phylogenetic kinds not generally thought to be associated with hypersaline environments. Collectively, the results indicate that the diversity of life is extensive even in this seemingly inhospitable "extreme" environment.

  3. Biomarkers as Indicators of Respiration During Laboratory Incubations of Alaskan Arctic Tundra Permafrost Soils

    NASA Astrophysics Data System (ADS)

    Hutchings, J.; Schuur, E.; Bianchi, T. S.; Bracho, R. G.

    2015-12-01

    High latitude permafrost soils are estimated to store 1,330 - 1,580 Pg C, which account for ca. 40% of global soil C and nearly twice that of atmospheric C. Disproportionate heating of high latitude regions during climate warming potentially results in permafrost thaw and degradation of surficial and previously-frozen soil C. Understanding how newly-thawed soils respond to microbial degradation is essential to predicting C emissions from this region. Laboratory incubations have been a key tool in understanding potential respiration rates from high latitude soils. A recent study found that among the common soil measurements, C:N was the best predictor of C losses. Here, we analyzed Alaskan Arctic tundra soils from before and after a nearly 3-year laboratory incubation. Bulk geochemical values as well as the following biomarkers were measured: lignin, amino acids, n-alkanes, and glycerol dialkyl glycerol tetraethers (GDGT). We found that initial C:N did not predict C losses and no significant change in C:N between initial and final samples. The lignin acid to aldehyde (Ad:Al) degradation index showed the same results with a lack of C loss prediction and no significant change during the experiment. However, we did find that C:N and Ad:Al had a significant negative correlation suggesting behavior consistent with expectations. The failure to predict C losses was likely influenced by a number of factors, including the possibility that biomarkers were tracking a smaller fraction of slower cycling components of soil C. To better interpret these results, we also used a hydroxyproline-based amino acid degradation index and n-alkanes to estimate the contribution Sphagnum mosses to soil samples - known to have slower turnover times than vascular plants. Finally, we applied a GDGT soil temperature proxy to estimate the growing season soil temperatures before each incubation, as well as investigating the effects of incubation temperature on the index's temperature estimate.

  4. Shrub expansion and climate feedbacks in Arctic tundra

    NASA Astrophysics Data System (ADS)

    Loranty, Michael M.; Goetz, Scott J.

    2012-03-01

    Arctic tundra ecosystems stand to play a substantial role in both the magnitude and rate of global climate warming over the coming decades and centuries. The exact nature of this role will be determined by the combined effects of currently amplified rates of climate warming in the Arctic (Serreze et al 2000) and a series of related positive climate feedbacks that include mobilization of permafrost carbon (Schuur et al 2008), decreases in surface albedo (Chapin et al 2005) and evapotranspiration (ET) mediated increases in atmospheric water vapor (Swann et al 2010). Conceptually, these feedback mechanisms are intuitive and readily comprehensible: warming-induced permafrost thaw will make new soil carbon pools accessible for microbial respiration, and increased vegetation productivity, expansion of shrubs in particular, will lower surface reflectance and increase ET. However, our current understanding of these feedback mechanisms relies largely on limited and local field studies and, as such, the quantitative estimates of feedback effects on regional and global climate require spatial upscaling and uncertainty estimates derived from models. Moreover, the feedback mechanisms interact and their combined net effect on climate is highly variable and not well characterized. A recent study by Bonfils et al (2012) is among the first to explicitly examine how shrub expansion in tundra ecosystems will impact regional climate. Using an Earth system model, Bonfils et al find that an idealized 20% increase in shrub cover north of 60°N latitude will lead to annual temperature increases of 0.66 °C and 1.84 °C, respectively, when the shrubs are 0.5 m and 2 m tall. The modeled temperature increases arise from atmospheric heating as a combined consequence of decreased albedo and increased ET. The primary difference between the two cases is associated with the fact that tall shrubs protrude above the snow, thus reducing albedo year round, whereas short shrubs are completely

  5. Characterizing adsorptive properties and DOC concentrations in soils of Northern European Russian tundra and taiga.

    NASA Astrophysics Data System (ADS)

    Oosterwoud, Marieke; Temminghoff, Erwin; van der Zee, Sjoerd

    2010-05-01

    Subarctic river basins have an enormous potential to mobilize and transport terrestrial OC to the Arctic Ocean, because 23-48% of the worlds soils organic carbon (SOC) is stored in the high latitude region. Currently the Arctic drainage basin (~24 x 106 km2) processes about 11% of the global dissolved organic carbon (DOC), which is exported to the ocean. About 10-25% of annual C input to the organic surface layer with litter is leached from the organic surface layers. As climate changes, the amount and chemical composition of DOC exported from these basins are expected to change. Adsorption of DOC on mineral phases is the key geochemical process for the release and removal of DOC from this potentially soluble carbon pool. Most DOC leached from organic horizons is adsorbed and retained in the subsoils. The adsorption depends much on the content of sesquioxides and amount of carbon previously accumulated in soils. Besides adsorption, polyvalent metal ions in solution, such as Al and Ca, can cause precipitation of DOC. Along with the decrease of DOC concentrations on its passage through mineral soil, there are major biochemical alterations of DOC composition. Hydrophobic compounds (humic and fulvic acids) of high molecular weight that are rich in acidic functional groups and aromatic compounds adsorb most strongly. Hydrophilic compounds can contribute to DOC adsorption but are also easily desorbed because of the weaker bonding strength. The aim of this study was to characterize the DOC concentrations and their chemical composition as well as the DOC adsorptive properties of soils found in a tundra and taiga catchment of Northern Russia. We sampled soil and soil solution from two catchments in the Komi Republic of European Northern Russia: a tundra (67N/62E) and a taiga (62N/50E). The soil samples were analysed for total organic carbon (Ct) and the content of sequioxides. By extracting soil samples with water we got an impression of the potentially extractable organic

  6. Methane dynamics in warming tundra of Northeast European Russia

    NASA Astrophysics Data System (ADS)

    Marushchak, M. E.; Friborg, T.; Biasi, C.; Herbst, M.; Johansson, T.; Kiepe, I.; Liimatainen, M.; Lind, S. E.; Martikainen, P. J.; Virtanen, T.; Soegaard, H.; Shurpali, N. J.

    2015-08-01

    Methane (CH4) fluxes were investigated in a subarctic Russian tundra site in a multi-approach study combining plot scale data, ecosystem scale eddy covariance (EC) measurements and fine resolution land cover classification scheme for regional upscaling. The flux data as measured by the two independent techniques resulted in a seasonal (May-October 2008) cumulative CH4 emission of 2.4 (EC) and 3.7 g CH4 m-2 (manual chambers) for the source area representative of the footprint of the EC instruments. Upon upscaling for the entire study region of 98.6 km2, the chamber measured flux data yielded a regional flux estimate of 6.7 g CH4 m-2 yr-1. Our upscaling efforts accounted for the large spatial variability in the distribution of the various land cover types (LCTs) predominant at our study site. In particular, wetlands with emissions ranging from 34 to 53 g CH4 m-2 yr-1 were the most dominant CH4 emitting surfaces. Emissions from thermokarst lakes were an order of magnitude lower, while the rest of the landscape (mineral tundra) was a weak sink for atmospheric methane. Vascular plant cover was a key factor in explaining the spatial variability of CH4 emissions among wetland types, as indicated by the positive correlation of emissions with the leaf area index (LAI). As elucidated through a stable isotope analysis, the plant transport was the dominant CH4 release pathway that discriminates against heavier δ13C-CH4. The methane released from wetlands was lighter than that in the surface porewater and δ13C in the emitted CH4 correlated with the vascular plant cover (LAI) implying that the plant-mediated CH4 release dominates. A mean value of δ13C obtained here for the emitted CH4, -68.2 ± 2.0 ‰, is within the range of values from other wetlands, thus reinforcing the use of inverse modeling tools to better constrain the CH4 budget. Based on the IPCC A1B emission scenario, a temperature increase of 7 °C has been predicted for the tundra region of European Russia by the

  7. Satellite based permafrost modeling in low land tundra landscapes

    NASA Astrophysics Data System (ADS)

    Langer, M.; Westermann, S.; Heikenfeld, M.; Boike, J.

    2012-12-01

    For most of the cryosphere components such as glaciers, ice sheets, sea ice, and snow satellite monitoring and change detection is well established since several decades. For permafrost, however, which represents the largest component of the Arctic cryosphere operational satellite monitoring schemes do not exist so far. Most of the processes which control the Arctic terrestrial ecosystems are related to the thermal state of permafrost and the freeze/thaw dynamics of the active layer. Hence, satellite based permafrost monitoring would be highly beneficial for the impact assessment of climate change in the Arctic. Permafrost monitoring could also be highly beneficial for the risk assessment of infrastructure in the Arctic such as roads, pipelines, and buildings which are directly affected by the thermal stability of permafrost. Increasing thaw depths and prolonged thaw periods can damage pipelines and interrupt the access to vast regions due to road damages. Sustained warming of permafrost can result in thermal erosion and landslides which threaten buildings and other infrastructural facilities. In this study we present a possible permafrost monitoring scheme based on a numerical heat flow model which is forced by multiple satellite products and initialized by weather reanalysis data. The used forcing and initialization dataset includes the land surface temperature (LST), the snow cover fraction (SCF), and the snow water equivalent (SWE). Previous studies demonstrated that MODIS LST products can deliver reasonable surface temperature measurements in tundra landscapes (Langer et al. 2010, Westermann et al. 2011). This study is based on the ten year record of the daily MOD11A1v5 and MYD11A1v5 land surface temperature products with a spatial resolution of 1km. The snow cover evolution is obtained from the daily GlobSnow SWE product with a spatial resolution of about 25km. In addition, the MODIS snow cover products MOD10A1v5 and MYD10v5 with a resolution of 1km are used

  8. Topographic Variation and Methane Production in Siberian Arctic Tundra

    NASA Astrophysics Data System (ADS)

    Eason, J.; Kuhn, M. A.; Dunn, S.; Spawn, S.; Schade, J. D.

    2014-12-01

    Understanding the fate of soil carbon when permafrost soils begin to thaw is critical for predicting the impact of permafrost thaw on global climate change. Microbial metabolism of soil carbon can produce carbon dioxide or methane, depending on soil conditions, and which pathway dominates has great significance for the strength of climate feedbacks since methane is a much more powerful greenhouse gas than carbon dioxide. In Arctic ecosystems, methane production from upland environments is not well understood and generally assumed to be low because conditions there are generally not favorable for methanogenesis. Small changes in topography, however, can lead to great heterogeneity in soil conditions at small scales that may lead to higher methane flux than generally recognized. In this study, we investigated patterns in methane, carbon dioxide, and oxygen concentrations in in surface waters of 15 small ponds in the Kolyma River watershed in Northeast Siberia. The ponds were distributed across a topographic gradient from upland tundra high in the landscape to low-lying ponds in the floodplain of the Kolyma River. In addition, we used chambers to measured methane fluxes from a variety of topographic depressions that ranged from pools to moss-dominated saturated soils lacking surface water, to dry soils dominated by sedges. Dissolved carbon dioxide concentrations in ponds showed no trend down the topographic gradient while methane concentrations decreased downslope. The decrease in methane production may be the result of a switch from green moss to brown moss, which may act as a host for methanotrophic bacteria. Ponds with green moss had significantly higher concentrations of methane than the ponds with brown moss. In addition, we found significantly higher methane fluxes from pools and saturated soils then from drier soils, which showed very low fluxes. These results suggest that upland tundra may be a significant source of methane, and that methane fluxes are driven

  9. Can lemmings control the expansion of woody plants on tundra?

    NASA Astrophysics Data System (ADS)

    Oksanen, Lauri; Oksanen, Tarja; Olofsson, Johan; Virtanen, Risto; Hoset, Katrine; Tuomi, Maria; Kyrö, Kukka

    2013-04-01

    The ongoing expansion of woody vegetation in the arctic, due to global warming, creates a positive feed back loop. Increasing abundance of woody plants reduces surface albedo both directly and via speeding up snow melt. Thus a successively greater fraction of incoming solar radiation is absorbed and converted to heat. Browsing mammals - both big and small - can prevent this by consuming woody plants. However, the grazer/browser community of many tundra areas is dominated by brown/Norwegian lemmings (Lemmus spp.) which eat graminoids and mosses and cannot use woody plants as forage. It would seem a priori likely that in such areas, mammalian herbivores speed up the expansion of woody plants by improving the chances of their seedlings to get established. We studied the impact of lemmings on woody plants by constructing lemming proof exclosures within piece high-altitude tundra at Joatkanjávri, northernmost Norway. The exclosures were constructed in 1998, during a period of low lemming densities, in snow-beds, where Norwegian lemmings (L. lemmus) were the only ecologically significant herbivorous mammals. (Reindeer migrate through the area in May, when snow-beds are inaccessible for them; during the fall migration, the area represents a dead end and is therefore avoided.) We chose pairs of maximally similar vegetation patches of 0.5 by 0.5 m and randomly assigned one of each pair to become an exclosure while the other plot was left open. The initial state of the vegetation was documented by the point frequency method. In 2008, after the 2007 lemming outbreak, the same documentation was repeated; thereafter the plots were harvested, the vegetation was sorted to species, oven dried and weighed. Exclusion of lemmings resulted to pronounced increase in community level plant biomass. Evergreen woody plants were especially favored by the exclusion of lemming: their above-ground biomass in exclosures was 14 times as great as their biomass on open reference plots. The

  10. Water track distribution and effects on carbon dioxide flux in an eastern Siberian upland tundra landscape

    NASA Astrophysics Data System (ADS)

    Curasi, Salvatore R.; Loranty, Michael M.; Natali, Susan M.

    2016-04-01

    Shrub expansion in tundra ecosystems may act as a positive feedback to climate warming, the strength of which depends on its spatial extent. Recent studies have shown that shrub expansion is more likely to occur in areas with high soil moisture and nutrient availability, conditions typically found in sub-surface water channels known as water tracks. Water tracks are 5–15 m wide channels of subsurface water drainage in permafrost landscapes and are characterized by deeper seasonal thaw depth, warmer soil temperatures, and higher soil moisture and nutrient content relative to adjacent tundra. Consequently, enhanced vegetation productivity, and dominance by tall deciduous shrubs, are typical in water tracks. Quantifying the distribution of water tracks may inform investigations of the extent of shrub expansion and associated impacts on tundra ecosystem carbon cycling. Here, we quantify the distribution of water tracks and their contribution to growing season CO2 dynamics for a Siberian tundra landscape using satellite observations, meteorological data, and field measurements. We find that water tracks occupy 7.4% of the 448 km2 study area, and account for a slightly larger proportion of growing season carbon uptake relative to surrounding tundra. For areas inside water tracks dominated by shrubs, field observations revealed higher shrub biomass and higher ecosystem respiration and gross primary productivity relative to adjacent upland tundra. Conversely, a comparison of graminoid-dominated areas in water tracks and inter-track tundra revealed that water track locations dominated by graminoids had lower shrub biomass yet increased net uptake of CO2. Our results show water tracks are an important component of this landscape. Their distribution will influence ecosystem structural and functional responses to climate, and is therefore of importance for modeling.

  11. Water track distribution and effects on carbon dioxide flux in an eastern Siberian upland tundra landscape

    NASA Astrophysics Data System (ADS)

    Curasi, Salvatore R.; Loranty, Michael M.; Natali, Susan M.

    2016-04-01

    Shrub expansion in tundra ecosystems may act as a positive feedback to climate warming, the strength of which depends on its spatial extent. Recent studies have shown that shrub expansion is more likely to occur in areas with high soil moisture and nutrient availability, conditions typically found in sub-surface water channels known as water tracks. Water tracks are 5-15 m wide channels of subsurface water drainage in permafrost landscapes and are characterized by deeper seasonal thaw depth, warmer soil temperatures, and higher soil moisture and nutrient content relative to adjacent tundra. Consequently, enhanced vegetation productivity, and dominance by tall deciduous shrubs, are typical in water tracks. Quantifying the distribution of water tracks may inform investigations of the extent of shrub expansion and associated impacts on tundra ecosystem carbon cycling. Here, we quantify the distribution of water tracks and their contribution to growing season CO2 dynamics for a Siberian tundra landscape using satellite observations, meteorological data, and field measurements. We find that water tracks occupy 7.4% of the 448 km2 study area, and account for a slightly larger proportion of growing season carbon uptake relative to surrounding tundra. For areas inside water tracks dominated by shrubs, field observations revealed higher shrub biomass and higher ecosystem respiration and gross primary productivity relative to adjacent upland tundra. Conversely, a comparison of graminoid-dominated areas in water tracks and inter-track tundra revealed that water track locations dominated by graminoids had lower shrub biomass yet increased net uptake of CO2. Our results show water tracks are an important component of this landscape. Their distribution will influence ecosystem structural and functional responses to climate, and is therefore of importance for modeling.

  12. The southernmost Andean Mountain soils: a toposequence from Nothofagus Forest to Sub Antarctic Tundra at Ushuaia, Tierra del Fuego

    NASA Astrophysics Data System (ADS)

    Firme Sá, Mariana M.; Schaefer, Carlos E.; Loureiro, Diego C.; Simas, Felipe N.; Francelino, Marcio R.; Senra, Eduardo O.

    2015-04-01

    Located at the southern tip of the Fuegian Andes Cordilhera, the Martial glacier witnessed a rapid process of retreat in the last century. Up to now little is known about the development and genesis of soils of this region. A toposequence of six soils, ranging from 430-925 m a.s.l, was investigated, with emphasis on genesis, chemical and mineralogical properties. The highest, youngest soil is located just below the Martial Glacier Martial Sur sector, and the lowest soils occur on sloping moraines under Nothofagus pumilio forests. Based on chemical, physical and mineralogical characteristics, the soils were classified according to the Soil taxonomy, being keyed out as Inceptisols and Entisols. Soil parent material of the soil is basically moraines, in which the predominant lithic components dominated by metamorphic rocks, with allochthonous contributions of wind-blown materials (very small fragments of volcanic glass) observed by hand lens in all horizons, except the highest profile under Tundra. In Nothofagus Deciduous Forests at the lowest part of the toposequence, poorly developed Inceptisols occur with Folistic horizons, with mixed "andic" and "spodic" characters, but with a predominance of andosolization (Andic Drystrocryepts). Under Tundra vegetation, Inceptisols are formed under hydromorphism and andosolization processes (Oxiaquic Dystrocrepts and Typic Dystrocrepts). On highland periglacial environments, soils without B horizon with strong evidence of cryoturbation and cryogenesis occur, without present-day permafrost down to 2 meters (Typic Cryorthents and Lithic Haploturbels). The mountain soils of Martial glacier generalize young, stony and rich in organic matter, with the exception of barely vegetated Tundra soils at higher altitudes. The forest soils are more acidic and have higher Al3+activity. All soils are dystrophic, except for the highest profile of the local periglacial environment. The organic carbon amounts are higher in forest soils and

  13. A Cyanine Dye Encapsulated Porous Fibrous Mat for Naked-Eye Ammonia Sensing.

    PubMed

    Ji, Chendong; Ma, Lijing; Yin, Meizhen; Yang, Wantai; Pan, Kai

    2016-08-19

    Electrospun ultrathin fiber-based sensors are desirable because of their practicality and sensitivity. Ammonia-detection systems are in high demand in different areas, including the industrial and agricultural fields. However, current technologies rely on large and complex instruments that restrict their actual utilization. Herein, we report a flexible naked-eye ammonia sensor, the polylactic acid-cyanine (PLA-Cy) fibrous mat, which was fabricated by blending a carboxyl-functionalized cyanine dye (D1) into electospun PLA porous fibers. The sensing mat was shown to undergo a naked-eye-detectable color change from white to blue upon exposure to ammonia vapor. The mat showed high selectivity to ammonia gas with a detection limit of 3.3 ppm. Aggregated D1 was first encapsulated by PLA and was then ionized by NH3 . These mechanisms were examined by photophysical studies and scanning electron microscopy. The aggregation-deaggregation process of D1 in the PLA-Cy fibrous mat led to the color change. This work provides a facile method for the naked-eye detection of ammonia and a novel strategy for the use of organic dyes in ammonia sensing.

  14. A Cyanine Dye Encapsulated Porous Fibrous Mat for Naked-Eye Ammonia Sensing.

    PubMed

    Ji, Chendong; Ma, Lijing; Yin, Meizhen; Yang, Wantai; Pan, Kai

    2016-08-19

    Electrospun ultrathin fiber-based sensors are desirable because of their practicality and sensitivity. Ammonia-detection systems are in high demand in different areas, including the industrial and agricultural fields. However, current technologies rely on large and complex instruments that restrict their actual utilization. Herein, we report a flexible naked-eye ammonia sensor, the polylactic acid-cyanine (PLA-Cy) fibrous mat, which was fabricated by blending a carboxyl-functionalized cyanine dye (D1) into electospun PLA porous fibers. The sensing mat was shown to undergo a naked-eye-detectable color change from white to blue upon exposure to ammonia vapor. The mat showed high selectivity to ammonia gas with a detection limit of 3.3 ppm. Aggregated D1 was first encapsulated by PLA and was then ionized by NH3 . These mechanisms were examined by photophysical studies and scanning electron microscopy. The aggregation-deaggregation process of D1 in the PLA-Cy fibrous mat led to the color change. This work provides a facile method for the naked-eye detection of ammonia and a novel strategy for the use of organic dyes in ammonia sensing. PMID:27411059

  15. Proliferation of Purple Sulphur Bacteria at the Sediment Surface Affects Intertidal Mat Diversity and Functionality

    PubMed Central

    Hubas, Cédric; Jesus, Bruno; Ruivo, Mickael; Meziane, Tarik; Thiney, Najet; Davoult, Dominique; Spilmont, Nicolas; Paterson, David M.; Jeanthon, Christian

    2013-01-01

    There is a relative absence of studies dealing with mats of purple sulphur bacteria in the intertidal zone. These bacteria display an array of metabolic pathways that allow them to disperse and develop under a wide variety of conditions, making these mats important in terms of ecosystem processes and functions. Mass blooms of purple sulphur bacteria develop during summer on sediments in the intertidal zone especially on macroalgal deposits. The microbial composition of different types of mats differentially affected by the development of purple sulphur bacteria was examined, at low tide, using a set of biochemical markers (fatty acids, pigments) and composition was assessed against their influence on ecosystem functions (sediment cohesiveness, CO2 fixation). We demonstrated that proliferation of purple sulphur bacteria has a major impact on intertidal mats diversity and functions. Indeed, assemblages dominated by purple sulphur bacteria (Chromatiaceae) were efficient exopolymer producers and their biostabilisation potential was significant. In addition, the massive growth of purple sulphur bacteria resulted in a net CO2 degassing whereas diatom dominated biofilms represented a net CO2 sink. PMID:24340018

  16. Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities

    NASA Technical Reports Server (NTRS)

    Paerl, H. W.; Bebout, B. M.; Joye, S. B.; Des Marais, D. J.

    1993-01-01

    Intertidal marine microbial mats exhibited biologically mediated uptake of low molecular weight dissolved organic matter (DOM), including D-glucose, acetate, and an L-amino acid mixture at trace concentrations. Uptake of all compounds occurred in darkness, but was frequently enhanced under natural illumination. The photosystem 2 inhibitor, 3-(3,4-dichlorophenyl)-1,1-dimethyl urea (DCMU) generally failed to inhibit light-stimulated DOM uptake. Occasionally, light plus DCMU-amended treatments led to uptake rates higher than light-incubated samples, possibly due to phototrophic bacteria present in subsurface anoxic layers. Uptake was similar with either 3H- or 14C-labeled substrates, indicating that recycling of labeled CO2 via photosynthetic fixation was not interfering with measurements of light-stimulated DOM uptake. Microautoradiographs showed a variety of pigmented and nonpigmented bacteria and, to a lesser extent, cyanobacteria and eucaryotic microalgae involved in light-mediated DOM uptake. Light-stimulated DOM uptake was often observed in bacteria associated with sheaths and mucilage surrounding filamentous cyanobacteria, revealing a close association of organisms taking up DOM with photoautotrophic members of the mat community. The capacity for dark- and light-mediated heterotrophy, coupled to efficient retention of fixed carbon in the mat community, may help optimize net production and accretion of mats, even in oligotrophic waters.

  17. Microscale characterization of dissolved organic matter production and uptake in marine microbial mat communities.

    PubMed

    Paerl, H W; Bebout, B M; Joye, S B; Des Marais, D J

    1993-01-01

    Intertidal marine microbial mats exhibited biologically mediated uptake of low molecular weight dissolved organic matter (DOM), including D-glucose, acetate, and an L-amino acid mixture at trace concentrations. Uptake of all compounds occurred in darkness, but was frequently enhanced under natural illumination. The photosystem 2 inhibitor, 3-(3,4-dichlorophenyl)-1,1-dimethyl urea (DCMU) generally failed to inhibit light-stimulated DOM uptake. Occasionally, light plus DCMU-amended treatments led to uptake rates higher than light-incubated samples, possibly due to phototrophic bacteria present in subsurface anoxic layers. Uptake was similar with either 3H- or 14C-labeled substrates, indicating that recycling of labeled CO2 via photosynthetic fixation was not interfering with measurements of light-stimulated DOM uptake. Microautoradiographs showed a variety of pigmented and nonpigmented bacteria and, to a lesser extent, cyanobacteria and eucaryotic microalgae involved in light-mediated DOM uptake. Light-stimulated DOM uptake was often observed in bacteria associated with sheaths and mucilage surrounding filamentous cyanobacteria, revealing a close association of organisms taking up DOM with photoautotrophic members of the mat community. The capacity for dark- and light-mediated heterotrophy, coupled to efficient retention of fixed carbon in the mat community, may help optimize net production and accretion of mats, even in oligotrophic waters.

  18. Super-Hydrophobic High Throughput Electrospun Cellulose Acetate (CA) Nanofibrous Mats as Oil Selective Sorbents

    NASA Astrophysics Data System (ADS)

    Han, Chao

    The threat of oil pollution increases with the expansion of oil exploration and production activities, as well as the industrial growth around the world. Use of sorbents is a common method to deal with the oil spills. In this work, an advanced sorbent technology is described. A series of non-woven Cellulose Acetate (CA) nanofibrous mats with a 3D fibrous structure were synthesized by a novel high-throughput electrospinning technique. The precursor was solutions of CA/ acetic acid-acetone in various concentrations. Among them, 15.0% CA exhibits a superhydrophobic surface property, with a water contact angle of 128.95°. Its oil sorption capacity is many times higher the oil sorption capacity of the best commercial sorbent available in the market. Also, it showed good buoyancy properties on the water both as dry-mat and oil-saturated mat. In addition, it is biodegradable, easily available, easily manufactured, so the CA nanofibrous mat is an excellent candidate as oil sorbent for oil spill in water treatment.

  19. Carbon and Oxygen Budgets of Hypersaline Cyanobacterial Mats: Effects of Tidal Cycle and Temperature

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; Bebout, Brad M.; Carpenter, Steven; Discipulo, Mykell; Turk, Kendra

    2003-01-01

    The hierarchical organization of microbial ecosystems determines the rates of processes that shape Earth#s environment, define the stage upon which major evolutionary events occurred, and create biosignatures in sediments and atmospheres. In cyanobacterial mats, oxygenic photosynthesis provides energy, organic substrates and oxygen to the ecosystem. Incident light changes with depth in the mat, both in intensity and spectral composition, and counteracting gradients of oxygen and sulfide shape the chemical microenvironment. A combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods and to various depths in the mat. Microbiota produce hydrogen, small organic acids, and nitrogen and sulfur species. Such compounds fuel a flow of energy and electrons in these ecosystems and thus shape interactions between groups of microorganisms. Coordinated observations of population distribution, abundance, and activity for an entire community are making fundamental questions in ecology accessible. These questions address those factors that sustain the remarkable diversity of microorganisms that are now being revealed by molecular techniques. These questions also target the processes that shape the various kinds of biosignatures that we will seek, both in ancient rocks from Earth and Mars, and in atmospheres of distant planets beyond our Solar System.

  20. Modelling tundra vegetation response to recent arctic warming.

    PubMed

    Miller, Paul A; Smith, Benjamin

    2012-01-01

    The Arctic land area has warmed by > 1 °C in the last 30 years and there is evidence that this has led to increased productivity and stature of tundra vegetation and reduced albedo, effecting a positive (amplifying) feedback to climate warming. We applied an individual-based dynamic vegetation model over the Arctic forced by observed climate and atmospheric CO(2) for 1980-2006. Averaged over the study area, the model simulated increases in primary production and leaf area index, and an increasing representation of shrubs and trees in vegetation. The main underlying mechanism was a warming-driven increase in growing season length, enhancing the production of shrubs and trees to the detriment of shaded ground-level vegetation. The simulated vegetation changes were estimated to correspond to a 1.75 % decline in snow-season albedo. Implications for modelling future climate impacts on Arctic ecosystems and for the incorporation of biogeophysical feedback mechanisms in Arctic system models are discussed. PMID:22864701

  1. Domibacillus tundrae sp. nov., isolated from active layer soil of tussock tundra in Alaska, and emended description of the genus Domibacillus.

    PubMed

    Gyeong, Hye Ryeon; Baek, Kiwoon; Hwang, Chung Yeon; Park, Key Hun; Kim, Hye Min; Lee, Hong Kum; Lee, Yoo Kyung

    2015-10-01

    A novel Gram-stain-positive, spore-forming, aerobic, motile and rod-shaped bacterium designated strain PAMC 80007T was isolated from an active layer soil sample of Council, Alaska. Optimal growth of strain PAMC 80007T was observed at 30 °C, pH 7.0 and in the presence of 2 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence indicated that strain PAMC 80007T belonged to the genus Domibacillus. This strain was closely related to Domibacillus enclensis (98.3 %), Domibacillus robiginosus (98.3 %) and Domibacillus indicus (97.2 %). Genomic DNA G+C content was 43.5 mol% and genomic relatedness analyses based on the average nucleotide identity and the genome-to-genome distance showed that strain PAMC 80007T is clearly distinguished from the closely related species of the genus Domibacillus. The major fatty acids (>5 %) were iso-C15 : 0 (24.7 %), C16 : 1ω11c (16.8 %), anteiso-C15 : 0 (16.5 %), C16 : 0 (15.6 %) and anteiso-C17 : 0 (8.7 %). The major respiratory isoprenoid quinones were menaquinone-6 (MK-6) and menaquinone-7 (MK-7), and the polar lipid profile contained diphosphatidylglycerol, phosphatidylglycerol, phosphoglycolipid, phospholipid and two unidentified lipids. meso-Diaminopimelic acid (type A1γ) was present in the cell-wall peptidoglycan, and the major whole-cell sugar was ribose with a minor quantity of glucose. Results from a polyphasic study suggested that strain PAMC 80007T represents a novel species of the genus Domibacillus for which the name Domibacillus tundrae sp. nov. is proposed. The type strain is PAMC 80007T ( = JCM 30371T = KCTC 33549T = DSM 29572T). An emended description of the genus Domibacillus is also provided.

  2. [The processes of methane formation and oxidation in the soils of the Russian arctic tundra].

    PubMed

    Berestovskaia, Iu Iu; Rusanov, I I; Vasil'eva, L V; Pimenov, N V

    2005-01-01

    Methane emission from the following types of tundra soils was studied: coarse humic gleyey loamy cryo soil, peaty gley soil, and peaty gleyey midloamy cryo soil of the arctic tundra. All the soils studied were found to be potential sources of atmospheric methane. The highest values of methane emission were recorded in August at a soil temperature of 8-10 degrees C. Flooded parcels were the sources of atmospheric methane throughout the observation period. The rates of methane production and oxidation in tundra soils of various types at 5 and 15 degrees C were studied by the radioisotope method. Methane oxidation was found to occur in bog water, in the green part of peat moss, and in all the soil horizons studied. Methane formation was recorded in the horizons of peat, in clay with plant roots, and in peaty moss dust of the bogey parcels. At both temperatures, the methane oxidation rate exceeded the rate of methane formation in all the horizons of the mossy-lichen tundra and of the bumpy sinkhole complex. Methanogenesis prevailed only in a sedge-peat moss bog at 15 degrees C. Enrichment bacterial cultures oxidizing methane at 5 and 15 degrees C were obtained. Different types of methanotrophic bacteria were shown to be responsible for methane oxidation under these conditions. A representative of type I methylotrophs oxidized methane at 5 degrees C, and Methylocella tundrae, a psychroactive representative of an acidophilic methanotrophic genus Methylocella, at 15 degrees C. PMID:15938404

  3. Atmospheric methane sources - Alaskan tundra bogs, an alpine fen, and a subarctic boreal marsh

    NASA Technical Reports Server (NTRS)

    Sebacher, D. I.; Harriss, R. C.; Grice, S. S.; Bartlett, K. B.; Sebacher, S. M.

    1986-01-01

    Methane (CH4) flux measurements from Alaska tundra bogs, an alpine fen, and a subarctic boreal marsh were obtained at field sites ranging from Prudhoe Bay on the coast of the Arctic Ocean to the Alaskan Range south of Fairbanks during August 1984. In the tundra, average CH4 emission rates varied from 4.9 mg CH4 per sq m per day (moist tundra) to 119 mg CH4 per sq m per day (waterlogged tundra). Fluxes averaged 40 mg CH4 per sq m per day from wet tussock meadows in the Brooks Range and 289 mg Ch4 per sq m per day from an alpine fen in the Alaskan Range. The boreal marsh had an average CH4 emission rate of 106 mg CH4 per sq m per day. Significant emissions were detected in tundra areas where peat temperatures were as low as 4 C, and permafrost was only 25 cm below the ground surface. Emission rates from the 17 sites sampled were found to be logarithmically related to water levels at the sites. Extrapolation of the data to an estimate of the total annual CH4 emission from all arctic and boreal wetlands suggests that these ecosystems are a major source of atmospheric CH4 and could account for up to 23 percent of global CH4 emissions from wetlands.

  4. How will the tundra-taiga interface respond to climate change?

    PubMed

    Skre, Oddvar; Baxter, Robert; Crawford, Robert M M; Callaghan, Terry V; Fedorkov, Alexey

    2002-08-01

    The intuitive and logical answer to the question of how the tundra-taiga interface will react to global warming is that it should move north and this is mirrored by many models of potential treeline migration. Northward movement may be the eventual outcome if climatic warming persists over centuries or millennia. However, closer examination of the tundra-taiga interface across its circumpolar extent reveals a more complex situation. The regional climatic history of the tundra-taiga interface is highly varied, and consequently it is to be expected that the forest tundra boundary zone will respond differently to climate change depending on local variations in climate, evolutionary history, soil development, and hydrology. Investigations reveal considerable stability at present in the position of the treeline and while there may be a long-term advance northwards there are oceanic regions where climatic warming may result in a retreat southwards due to increased bog development. Reinforcing this trend is an increasing human impact, particularly in the forest tundra of Russia, which forces the limit of the forested areas southwards. Local variations will therefore require continued observation and research, as they will be of considerable importance economically as well as for ecology and conservation.

  5. Carbon and nutrient responses to fire and climate warming in Alaskan arctic tundra

    NASA Astrophysics Data System (ADS)

    Jiang, Y.; Rastetter, E. B.; Shaver, G. R.; Rocha, A. V.; Kwiatkowski, B.; Pearce, A.; Zhuang, Q.; Mishra, U.

    2015-12-01

    Fire frequency has dramatically increased in the tundra of northern Alaska, which has major implications for the carbon budget of the region and the functioning of these ecosystems that support important wildlife species. We applied the Multiple Element Limitation (MEL) model to investigate both the short- and long-term post-fire succession of plant and soil carbon, nitrogen, and phosphorus fluxes and stocks along a burn severity gradient in the 2007 Anaktuvuk River Fire scar in northern Alaska. We compared the patterns of biomass and soil carbon, nitrogen and phosphorus recoveries with different burn severities and warming intensities. Modeling results indicated that the early regrowth of post-fire tundra vegetation was limited primarily by its canopy photosynthetic potential, rather than nutrient availability. The long-term recovery of C balance from fire disturbance is mainly determined by the internal redistribution of nutrients among ecosystem components, rather than the supply of nutrients from external sources (e.g., nitrogen deposition and fixation, phosphorus weathering). Soil organic matter is the principal source of plant-available nutrients and determines the spatial variation of vegetation biomass across the North Slope of Alaska. Across the North Slope of Alaska, we examined the effects of changes in N and P cycles on tundra C budgets under climate warming. Our results indicate that the ongoing climate warming in Arctic enhances mineralization and leads to a net transfer of nutrient from soil organic matter to vegetation, thereby stimulating tundra plant growth and increased C sequestration in the tundra ecosystems.

  6. Methane emissions from tundra environments in the Yukon-Kuskokwin Delta, Alaska

    NASA Technical Reports Server (NTRS)

    Bartlett, Karen B.; Crill, Patrick M.; Sass, Ronald L.; Harriss, Robert C.; Dise, Nancy B.

    1992-01-01

    This paper reports CH4 flux to the atmosphere from a variety of tundra environments near Bethel, Alaska during the summer months of 1988. Emissions from wet meadow tundra averaged 144 +/- 31 mg/sq m/d and ranged from 15.6 to 426 mg/sq m/d varying with soil moisture and temperature. Flux from the drier upland tundra was about two orders of magnitude lower and averaged 2.3 +/- 1.1 mg/sq m/d. Tundra lakes emit CH4 from the open water surface as well as from fringing aquatic vegetation; the presence of vegetation significantly enhanced flux over open water rates. Calculated diffusive fluxes from open water varied with lake size, the large lakes emitting 3.8 mg/sq m/d and small lakes emitting an average of 77 mg/sq m/d. An updated estimate of global emissions from tundra indicates an annual fluxes of approximately 11 +/- 3 Tg CH4.

  7. Modeling carbon-nutrient interactions during the early recovery of tundra after fire.

    PubMed

    Jiang, Yueyang; Rastetter, Edward B; Rocha, Adrian V; Pearce, Andrea R; Kwiatkowski, Bonnie L; Shaver, Gaius R

    2015-09-01

    Fire frequency has dramatically increased in the tundra of northern Alaska, USA, which has major implications for the carbon budget of the region and the functioning of these ecosystems, which support important wildlife species. We investigated the postfire succession of plant and soil carbon (C), nitrogen (N), and phosphorus (P) fluxes and stocks along a burn severity gradient in the 2007 Anaktuvuk River fire scar in northern Alaska. Modeling results indicated that the early regrowth of postfire tundra vegetation was limited primarily by its canopy photosynthetic potential, rather than nutrient availability, because of the initially low leaf area and relatively high inorganic N and P concentrations in soil. Our simulations indicated that the postfire recovery of tundra vegetation was sustained predominantly by the uptake of residual inorganic N (i.e., in the remaining ash), and the redistribution of N and P from soil organic matter to vegetation. Although residual nutrients in ash were higher in the severe burn than the moderate burn, the moderate burn recovered faster because of the higher remaining biomass and consequent photosynthetic potential. Residual nutrients in ash allowed both burn sites to recover and exceed the unburned site in both aboveground biomass and production five years after the fire. The investigation of interactions among postfire C, N, and P cycles has contributed to a mechanistic understanding of the response of tundra ecosystems to fire disturbance. Our study provided insight on how the trajectory of recovery of tundra from wildfire is regulated during early succession.

  8. Methane emissions from tundra environments in the Yukon-Kuskokwin Delta, Alaska

    SciTech Connect

    Bartlett, K.B.; Crill, P.M.; Sass, R.L.; Harriss, R.C.; Dise, N.B. New Hampshire Univ., Durham Rice Univ., Houston, TX Minnesota Univ., Minneapolis )

    1992-10-01

    This paper reports CH[sub 4] flux to the atmosphere from a variety of tundra environments near Bethel, Alaska during the summer months of 1988. Emissions from wet meadow tundra averaged 144 +/- 31 mg/sq m/d and ranged from 15.6 to 426 mg/sq m/d varying with soil moisture and temperature. Flux from the drier upland tundra was about two orders of magnitude lower and averaged 2.3 +/- 1.1 mg/sq m/d. Tundra lakes emit CH4 from the open water surface as well as from fringing aquatic vegetation; the presence of vegetation significantly enhanced flux over open water rates. Calculated diffusive fluxes from open water varied with lake size, the large lakes emitting 3.8 mg/sq m/d and small lakes emitting an average of 77 mg/sq m/d. An updated estimate of global emissions from tundra indicates an annual fluxes of approximately 11 +/- 3 Tg CH[sub 4]. 41 refs.

  9. Below-ground carbon transfer among Betula nana may increase with warming in Arctic tundra.

    PubMed

    Deslippe, Julie R; Simard, Suzanne W

    2011-11-01

    • Shrubs are expanding in Arctic tundra, but the role of mycorrhizal fungi in this process is unknown. We tested the hypothesis that mycorrhizal networks are involved in interplant carbon (C) transfer within a tundra plant community. • Here, we installed below-ground treatments to control for C transfer pathways and conducted a (13)CO(2)-pulse-chase labelling experiment to examine C transfer among and within plant species. • We showed that mycorrhizal networks exist in tundra, and facilitate below-ground transfer of C among Betula nana individuals, but not between or within the other tundra species examined. Total C transfer among conspecific B. nana pairs was 10.7 ± 2.4% of photosynthesis, with the majority of C transferred through rhizomes or root grafts (5.2 ± 5.3%) and mycorrhizal network pathways (4.1 ± 3.3%) and very little through soil pathways (1.4 ± 0.35%). • Below-ground C transfer was of sufficient magnitude to potentially alter plant interactions in Arctic tundra, increasing the competitive ability and mono-dominance of B. nana. C transfer was significantly positively related to ambient temperatures, suggesting that it may act as a positive feedback to ecosystem change as climate warms.

  10. Bioremediation of metals, organic and mixed contaminants with microbial mats

    SciTech Connect

    Bender, J.

    1995-12-31

    Microbial mats are natural heterotrophic and autotrophic communities dominated by cyanobacteria (blue-green algae). They are self-organized laminated structures annealed tightly together by slimy secretions from various microbial components. The surface slime of the mats effectively immobilizes the ecosystem to a variety of substrates, thereby stabilizing the most efficient internal microbial structure. Cyanobacteria mats are generated for bioremediation applications by enriching a water surface with ensiled grass clippings. These constructed mats have been used to reduce selenate to elemental selenium, remove Pb, Cd, Cu, Zn, Co, Cr, Fe and Mn from water and to remove Pb from sediments of shallow laboratory ponds. Uranium, U{sup 238}, was removed from groundwater samples at the rate of 3.19 Mg/m{sup 2}/h. Degradation of recalcitrant organic contaminants by mats is relatively rapid under both dark and light conditions. The following contaminants have been degraded in water and/or soil media by constructed mats: TNT, chrysene, naphthalene, hexadecane, phenanthrene, PCB, TCE, pulp and paper mill wastes, and three pesticides: chlordane, carbofuran and paraquat. Radio-labeled experiments with mat-treated carbofuran, petroleum distillates, TNT, chlordane, PCB and TCE show that these compounds are mineralized by the constructed mats. Mats applied to mixed contaminant solutions (TCE + Zn and TNT + pb) sequestered the metal while mineralizing the TCE. Remediation rates of the organic and inorganic components were the same in mixed solution as they were in single application.

  11. Reduced Gas Cycling in Microbial Mats: Implications for Early Earth

    NASA Technical Reports Server (NTRS)

    Hoehler, Tori M.; Bebout, Brad M.; DesMarais, David J.; DeVincenzi, Donald L. (Technical Monitor)

    2000-01-01

    For more than half the history of life on Earth, biological productivity was dominated by photosynthetic microbial mats. During this time, mats served as the preeminent biological influence on earth's surface and atmospheric chemistry and also as the primary crucible for microbial evolution. We find that modern analogs of these ancient mat communities generate substantial quantities of hydrogen, carbon monoxide, and methane. Escape of these gases from the biosphere would contribute strongly to atmospheric evolution and potentially to the net oxidation of earth's surface; sequestration within the biosphere carries equally important implications for the structure, function, and evolution of anaerobic microbial communities within the context of mat biology.

  12. Organic geochemical studies of modern microbial mats from Shark Bay: Part I: Influence of depth and salinity on lipid biomarkers and their isotopic signatures.

    PubMed

    Pagès, A; Grice, K; Ertefai, T; Skrzypek, G; Jahnert, R; Greenwood, P

    2014-09-01

    The present study investigated the influence of abiotic conditions on microbial mat communities from Shark Bay, a World Heritage area well known for a diverse range of extant mats presenting structural similarities with ancient stromatolites. The distributions and stable carbon isotopic values of lipid biomarkers [aliphatic hydrocarbons and polar lipid fatty acids (PLFAs)] and bulk carbon and nitrogen isotope values of biomass were analysed in four different types of mats along a tidal flat gradient to characterize the microbial communities and systematically investigate the relationship of the above parameters with water depth. Cyanobacteria were dominant in all mats, as demonstrated by the presence of diagnostic hydrocarbons (e.g. n-C17 and n-C17:1). Several subtle but important differences in lipid composition across the littoral gradient were, however, evident. For instance, the shallower mats contained a higher diatom contribution, concordant with previous mat studies from other locations (e.g. Antarctica). Conversely, the organic matter (OM) of the deeper mats showed evidence for a higher seagrass contribution [high C/N, 13C-depleted long-chain n-alkanes]. The morphological structure of the mats may have influenced CO2 diffusion leading to more 13C-enriched lipids in the shallow mats. Alternatively, changes in CO2 fixation pathways, such as increase in the acetyl COA-pathway by sulphate-reducing bacteria, could have also caused the observed shifts in δ13C values of the mats. In addition, three smooth mats from different Shark Bay sites were analysed to investigate potential functional relationship of the microbial communities with differing salinity levels. The C25:1 HBI was identified in the high salinity mat only and a lower abundance of PLFAs associated with diatoms was observed in the less saline mats, suggesting a higher abundance of diatoms at the most saline site. Furthermore, it appeared that the most and least saline mats were dominated by

  13. Variation in bird's originating nitrogen availability limits High Arctic tundra development over last 2000 year (Hornsund, Svalbard)

    NASA Astrophysics Data System (ADS)

    Skrzypek, Grzegorz; Wojtuń, Bronisław; Hua, Quan; Richter, Dorota; Jakubas, Dariusz; Wojczulanis-Jakubas, Katarzyna; Samecka-Cymerman, Aleksandra

    2016-04-01

    Arctic and subarctic regions play important roles in the global carbon balance. However, nitrogen (N) deficiency is a major constraint for organic carbon sequestration in the High Arctic. Hence, the identification of the relative contributions from different N-sources is critical for understanding the constraints that limit tundra growth. The stable nitrogen composition of the three main N-sources and numerous plants were analyzed in ten tundra types (including those influenced by seabirds) in the Fuglebekken catchment (Hornsund, Svalbard, 77°N 15°E). The percentage of the total tundra N-pool provided by seabirds' feces (from planktivorous colonially breeding little auks Alle alle), ranged from 0-21% in Patterned-ground tundra to 100% in Ornithocoprophilous tundra. The total N-pool utilized by tundra plants in the studied catchment originated from birds (36%), atmospheric deposition (38%), and N2-fixation (26%). The results clearly show that N-pool in the tundra is significantly supplemented by nesting seabirds. Thus, if they experienced climate change induced substantial negative environmental pressure, it would adversely influence the tundra N-budget (Skrzypek et al. 2015). The growth rates and the sediment thickness (<15cm) in different tundra types varied considerably but the tundra age was similar in the whole area, <450 cal BP. The only exception was Ornithocoprophilous bird-N rich tundra with very diverse ages ranging from 235 to 2300 cal BP and thickness up to 110 cm. The growth rates for this tundra (62 cm core, 18 AMS 14C dates) were high (1.5-3.0 mm/yr) between 1568 and 1804 AD and then substantially declined for the period between 1804 and 1929 AD (0.2 mm/yr). These findings deliver an additional argument, that the organic matter accumulation is driven not only directly by climatic conditions but also by birds' contribution to the tundra N-pool. Skrzypek G, Wojtuń B, Richter D, Jakubas D, Wojczulanis-Jakubas K, Samecka-Cymerman A, 2015

  14. Arctic lakes and streams as gas conduits to the atmosphere: Implications for tundra carbon budgets

    SciTech Connect

    Kling, G.W. ); Kipphut, G.W. ); Miller, M.C. )

    1991-01-01

    Arctic tundra has large amounts of stored carbon and is thought to be a sink for atmospheric carbon dioxide (CO{sub 2}) (0.1 to 0.3 petagram of carbon per year) (1 petagram = 10{sup 15} grams). But this estimate of carbon balance is only for terrestrial ecosystems. Measurements of the partial pressure of CO{sub 2} in 29 aquatic ecosystems across arctic Alaska showed that in most cases (27 of 29) CO{sub 2} was released to the atmosphere. This CO{sub 2} probably originates in terrestrial environments; erosion of particulate carbon plus ground-water transport of dissolved carbon from tundra contribute to the CO{sub 2} flux from surface waters to the atmosphere. If this mechanism is typical of that of other tundra areas, then current estimates of the arctic terrestrial sink for atmospheric CO{sub 2} may be 20 percent too high. 1 table, 2 figs., 21 refs.

  15. Controls over nutrient flow through plants and microbes in Arctic tundra. Final technical report

    SciTech Connect

    Chapin, F.S. III

    1995-01-01

    We successfully developed a series of models to explore the importance of species differences in phenologies of growth and nitrogen uptake to competitive interactions in upland tussock tundra. We developed growth models for 4 major tussock tundra species, based on observed growth rates and phenologies. We found that differences in phenology and nutrient use strategy could permit coexistence of some, but not all of the tundra plants modeled. The plant that was the best competitor, because of its rapid growth rate and superior ability to retranslocate nitrogen, may be naturally limited in its competitive ability by its tussock growth form. The mechanisms behind this limitation, and the contributions of patterns of mortality to observed production, will be explored in future modeling and experimental studies. In addition, our models point out that our understanding of the dynamics of nitrogen supply is still inadequate.

  16. Stromatolites, Metals, Statistics and Microbial Mats: A Complex Interplay

    NASA Astrophysics Data System (ADS)

    Spear, J. R.

    2014-12-01

    Initially thought to be relatively 'simple' ecosystems for study, microbial mats have long been considered ideal for any number of research questions. Microbial mats can be found in any number of environments, both natural and manmade, and are typically dependent upon the physiochemical environment for their structure, maintenance and longevity. Ultimately, these and other parameters govern community whereby a microbial mat provides overall ecosystem services to their environment. On the edge of a hotspring in Yellowstone National Park we have found an active microbial mat community that can form a laminated, lithified, accretionary structure that is likely the best example of a living and growing stromatolite. In the outfall channel of the sulfidic Stinking Spring, Utah, we have found examples of both naturally occurring laminated and floating mats where the carbon flux is controlled by abiotic degassing of CO2 rather than metabolism. δ13C-bicarbonate uptake experiments reveal an autotrophic growth rate of 0 - 0.16%/day while δ13C-acetate reveals a higher heterotrophic growth rate of 0.03 - 0.65%/day, which highlights the role of heterotrophs in these mats. Similar growth experiments on Little Hot Creek, California laminated microbial mats reveal a trend for top-down microbial growth with similar microbial taxonomy and diversity to other mat-types. Of a curious note is that incubation experiments with Little Hot Creek mats reveals the importance of particular metals in mat structure and function. Statistically, alpha- and beta-diversity metrics are often used to characterize microbial communities in such systems, but from an analysis of a wastewater treatment system, Hill diversities can better interpret the effective number of species to produce an ecologically intuitive quantity to better understand a microbial mat ecosystem.

  17. Can Long-Term Precipitation Trends Explain Net Annual Carbon Loss From High Elevation Alpine Tundra?

    NASA Astrophysics Data System (ADS)

    Knowles, J. F.; Blanken, P.; Williams, M. W.

    2013-12-01

    Five continuous years of eddy covariance measurements over predominantly snow-free alpine tundra on Niwot Ridge, Colorado show that ecosystem respiration dominates over gross primary productivity on an annual basis, and that this ecosystem is a significant source of carbon to the atmosphere over long periods of time. Long-term data also show that precipitation has increased since the 1960s, in contrast to modeled forecasts that generally predict decreasing precipitation through the 21st century across the Rocky Mountain region. To constrain the specific relationship between precipitation and the alpine tundra carbon cycle, we tested the degree to which precipitation and soil moisture determined respiration fluxes over the course of three years, and across a range of 17 sites, including xeric, mesic, and hydric alpine tundra soils, within the footprint of ongoing eddy covariance measurements. Overall, we found that respiration from this ecosystem was principally moisture-limited. Cumulatively, the highest respiration rates were measured from hydric soils associated with seasonal ice lenses and perched water tables, however, growing season respiration rates peaked in mesic areas when hydric soils were saturated. Respiration from xeric soils increased with soil moisture, but fluxes from these areas were small in magnitude relative to mesic and hydric soils. Changes in precipitation and resultant soil moisture thus invoked a bidirectional response from alpine tundra soils, as moisture and respiration were positively correlated in some areas, but negatively correlated in others, depending on landscape position and prevailing soil moisture regime. Interannually, however, respiration fluxes were highest in wet years, indicating that moisture stimulated respiration from xeric and mesic soils more than it was suppressed from hydric soils. In sum, increased precipitation over the last half-century may be augmenting respiratory fluxes from alpine tundra, but changes in

  18. Modeling the spatiotemporal variability in subsurface thermal regimes across a low-relief polygonal tundra landscape

    NASA Astrophysics Data System (ADS)

    Kumar, Jitendra; Collier, Nathan; Bisht, Gautam; Mills, Richard T.; Thornton, Peter E.; Iversen, Colleen M.; Romanovsky, Vladimir

    2016-09-01

    Vast carbon stocks stored in permafrost soils of Arctic tundra are under risk of release to the atmosphere under warming climate scenarios. Ice-wedge polygons in the low-gradient polygonal tundra create a complex mosaic of microtopographic features. This microtopography plays a critical role in regulating the fine-scale variability in thermal and hydrological regimes in the polygonal tundra landscape underlain by continuous permafrost. Modeling of thermal regimes of this sensitive ecosystem is essential for understanding the landscape behavior under the current as well as changing climate. We present here an end-to-end effort for high-resolution numerical modeling of thermal hydrology at real-world field sites, utilizing the best available data to characterize and parameterize the models. We develop approaches to model the thermal hydrology of polygonal tundra and apply them at four study sites near Barrow, Alaska, spanning across low to transitional to high-centered polygons, representing a broad polygonal tundra landscape. A multiphase subsurface thermal hydrology model (PFLOTRAN) was developed and applied to study the thermal regimes at four sites. Using a high-resolution lidar digital elevation model (DEM), microtopographic features of the landscape were characterized and represented in the high-resolution model mesh. The best available soil data from field observations and literature were utilized to represent the complex heterogeneous subsurface in the numerical model. Simulation results demonstrate the ability of the developed modeling approach to capture - without recourse to model calibration - several aspects of the complex thermal regimes across the sites, and provide insights into the critical role of polygonal tundra microtopography in regulating the thermal dynamics of the carbon-rich permafrost soils. Areas of significant disagreement between model results and observations highlight the importance of field-based observations of soil thermal and

  19. Assessing the carbon balance of circumpolar Arctic tundra using remote sensing and process modeling.

    PubMed

    Sitch, Stephen; McGuire, A David; Kimball, John; Gedney, Nicola; Gamon, John; Engstrom, Ryan; Wolf, Annett; Zhuang, Qianlai; Clein, Joy; McDonald, Kyle C

    2007-01-01

    This paper reviews the current status of using remote sensing and process-based modeling approaches to assess the contemporary and future circumpolar carbon balance of Arctic tundra, including the exchange of both carbon dioxide and methane with the atmosphere. Analyses based on remote sensing approaches that use a 20-year data record of satellite data indicate that tundra is greening in the Arctic, suggesting an increase in photosynthetic activity and net primary production. Modeling studies generally simulate a small net carbon sink for the distribution of Arctic tundra, a result that is within the uncertainty range of field-based estimates of net carbon exchange. Applications of process-based approaches for scenarios of future climate change generally indicate net carbon sequestration in Arctic tundra as enhanced vegetation production exceeds simulated increases in decomposition. However, methane emissions are likely to increase dramatically, in response to rising soil temperatures, over the next century. Key uncertainties in the response of Arctic ecosystems to climate change include uncertainties in future fire regimes and uncertainties relating to changes in the soil environment. These include the response of soil decomposition and respiration to warming and deepening of the soil active layer, uncertainties in precipitation and potential soil drying, and distribution of wetlands. While there are numerous uncertainties in the projections of process-based models, they generally indicate that Arctic tundra will be a small sink for carbon over the next century and that methane emissions will increase considerably, which implies that exchange of greenhouse gases between the atmosphere and Arctic tundra ecosystems is likely to contribute to climate warming.

  20. Responses of Tundra Ecosystems to Environmental Change: Observational and Experimental Results

    NASA Astrophysics Data System (ADS)

    Henry, G. H.

    2004-05-01

    Evidence of environmental changes due to human-enhanced climate warming continues to accumulate from polar regions. Responses in tundra and taiga ecosystems to climate changes have been variable because of the wide range in process response rates, from metabolic processes to adjustments in ecosystem carbon balance, and the variability in environmental settings across local to regional scales. For example, strong increases in rates of plant growth and changes in species composition and abundance have been observed in parts of the Low Arctic, but very little change has been measured in high arctic tundra. A dramatic increase in the cover of deciduous shrubs in areas of the western North American Arctic is predicted to result in positive feedbacks to soil temperature, through increased surface roughness and snow depth, and to atmospheric heating by reducing albedo. Increased shrub cover has also been found in long-term experimental warming studies conducted throughout the tundra biome as part of the International Tundra Experiment (ITEX). Warming is also affecting the carbon balance of tundra and taiga, which hold 25% of the soil carbon of global terrestrial ecosystems. However, trajectories of these changes are largely unknown for most northern systems, and differ because of initial conditions of the carbon and nutrient economy. Over the longer-term, the positive increases in plant growth may be constrained by negative feedbacks to nutrient cycling, as increases in C:N ratios of plant litter slow the release of nitrogen to soils. However, nitrogen availability has been shown to increase in response to short-term warming. In this presentation, I will review the responses of tundra ecosystems to climate variability and change, both through observational and experimental studies.

  1. Reduced postfire tree regeneration along a boreal forest-forest-tundra transect in northern Quebec

    SciTech Connect

    Sirois, L.; Payette, S. )

    1991-04-01

    The large 1950s fires that burned > 5,500 km{sup 2} of land across a south-to-north climatic gradient in northern Quebec provide an opportunity to evaluate the role of fire in forest-tundra development on a demographic basis. The tree population density before and {approx} 30 yr after fire was estimated by censusing trees in plots of 400 m{sup 2} located in upland and lowland within four representative ecoregions of northern Quebec. The analysis of tree recruitment before and after fire, in 410 randomly selected sites along a transect crossing the upper boreal forest and forest-tundra zones, indicated that wildfires induced substantial depletion of tree populations. Taken as a whole, fires have significantly reduced the density of black spruce populations in forest-tundra uplands, but not in the lowlands. Sustained reduction of tree population density after several destructive fires appears as one of the main deforestation processed in the subarctic zone. This leads to the patchy distribution of forest stands and scattered tree populations typical of the forest-tundra biome. Comparisons with paleoecological data suggest that the impact of the 1950s fires contributed to the expansion of the forest tundra into the upper boreal forest. The ecological impact of these fires was probably similar to those fires responsible for development of the forest tundra during the Holocene. It is suggested that the fire-climate interaction should be considered in order to predict the ecological impact of warming climate on high-latitude forest ecosystems.

  2. Persistence of high lead concentrations and associated effects in Tundra Swans captured near a mining and smelting complex in northern Idaho

    USGS Publications Warehouse

    Blus, L.J.; Henny, C.J.; Hoffman, D.J.; Sileo, L.; Audet, D.J.

    1999-01-01

    Lead poisoning of waterfowl, particularly tundra swans (Cygnus columbianus), has been documented in the Coeur d'Alene River Basin in northern Idaho for nearly a century. Over 90% of the lead-poisoned tundra swans in this area that were necropsied have no ingested lead shot. Spent lead shot from hunting activities over the years is therefore a minor source of lead in these swans. The migrating swans accumulated lethal burdens of lead from ingestion of sediments and aquatic vegetation during a short stopover in the spring. The lead originated from mining and smelting activities. Lead concentrations and physiological characteristics of blood were compared in swans captured in swim-in traps, with moribund swans caught by hand in the lead-contaminated area in 1987 and 1994-1995 and with birds captured by night-lighting in reference areas in 1994-1995. Blood lead concentrations in swans were highest in moribund birds (3.3 ?g g-1 in 1987 and 1995), intermediate in those trapped in the contaminated area (0.82 ?g g-1 in 1987 and 1.8 ?g g-1 in 1995), and lowest (0.11 ?g g-1) in those trapped in the reference areas. daminolevulinic acid dehydratase (ALAD) was significantly inhibited in swans from the contaminated area. Hematocrit and hemoglobin were significantly depressed only in moribund swans. Of the 19 swans found moribund and euthanized, 18 were classified as having lead toxicosis on the basis of lead levels in blood (1.3 to 9.6 ?g g-1) and livers (6 to 40 ?g g-1) and necropsy findings. The 19th swan had aspergillosis. There was no evidence that effects of lead on tundra swans had diminished from 1987 to 1995.

  3. Decoupled connection between soil microbial community and organic geochemical composition: a case study in the Arctic tundra, North Slope of Alaska

    NASA Astrophysics Data System (ADS)

    Liang, C.; Steffens, M.; Jastrow, J. D.; Zhang, X.; Antonopoulos, D. A.; Kogel-Knabner, I.

    2013-12-01

    Two-way feedback interactions persist between the soil microbiology and the carbon (C) geochemistry through C substrate-uptake preference and microbial utilization/transformation. Therefore, an understanding of how those continuously iterative processes influence soil microbial community and geochemical composition of soil organic matter is essential. However, finding direct correlations between the both has remained a challenge and been little explored. Here we show an unequivocal evidence that the forces structuring the soil microbial community and the organic geochemical composition of tundra soils differ. We determined soil microbial community and soil organic C (SOC) composition by four molecular-level techniques, i.e. DNA pyrosequencing and phospholipids fatty acid (PLFA) biomarkers for microbial analysis and solid-state 13C NMR spectroscopy and neutral sugars for SOC characterization for active-layer and permafrost. By independently summarizing explanatory structures of the relative abundance of microbial groups and soil C forms (using ordination and cluster analysis), we found that microbial community and the SOC chemistry were each consistently characterized by the two distinct measurement approaches. These methods identified distinct pattern differences between soil horizons (permafrost layer versus active organic layer) in both microbial community and the SOC. We used correlations to build the hypothesis about 'decoupled connection between microbiology and SOC geochemistry', particularly of their non-linearity in tundra soils, and then to assess how the C decomposition rate constants (at 4°C) relate to those structural patterns. We demonstrate that the controls on soil microbial community structure are fundamentally different from those on substrate C composition within tundra soils, thus enriching our understanding of C biogeochemical cycling and associated microbial behaviors.

  4. Shrub Abundance Mapping in Arctic Tundra with Misr

    NASA Astrophysics Data System (ADS)

    Duchesne, R.; Chopping, M. J.; Wang, Z.; Schaaf, C.; Tape, K. D.

    2013-12-01

    Over the last 60 years an increase in shrub abundance has been observed in the Arctic tundra in connection with a rapid surface warming trend. Rapid shrub expansion may have consequences in terms of ecosystem structure and function, albedo, and feedbacks to climate; however, its rate is not yet known. The goal of this research effort is thus to map large scale changes in Arctic tundra vegetation by exploiting the structural signal in moderate resolution satellite remote sensing images from NASA's Multiangle Imaging SpectroRadiometer (MISR), mapped onto a 250m Albers Conic Equal Area grid. We present here large area shrub mapping supported by reference data collated using extensive field inventory data and high resolution panchromatic imagery. MISR Level 1B2 Terrain radiance scenes from the Terra satellite from 15 June-31 July, 2000 - 2010 were converted to surface bidirectional reflectance factors (BRF) using MISR Toolkit routines and the MISR 1 km LAND product BRFs. The red band data in all available cameras were used to invert the RossThick-LiSparse-Reciprocal BRDF model to retrieve kernel weights, model-fitting RMSE, and Weights of Determination. The reference database was constructed using aerial survey, three field campaigns (field inventory for shrub count, cover, mean radius and height), and high resolution imagery. Tall shrub number, mean crown radius, cover, and mean height estimates were obtained from QuickBird and GeoEye panchromatic image chips using the CANAPI algorithm, and calibrated using field-based estimates, thus extending the database to over eight hundred locations. Tall shrub fractional cover maps for the North Slope of Alaska were constructed using the bootstrap forest machine learning algorithm that exploits the surface information provided by MISR. The reference database was divided into two datasets for training and validation. The model derived used a set of 19 independent variables(the three kernel weights, ratios and interaction terms

  5. Fire disturbance effects on land surface albedo in Alaskan tundra

    NASA Astrophysics Data System (ADS)

    French, Nancy H. F.; Whitley, Matthew A.; Jenkins, Liza K.

    2016-03-01

    The study uses satellite Moderate Resolution Imaging Spectroradiometer albedo products (MCD43A3) to assess changes in albedo at two sites in the treeless tundra region of Alaska, both within the foothills region of the Brooks Range, the 2007 Anaktuvuk River Fire (ARF) and 2012 Kucher Creek Fire (KCF). Results are compared to each other and other studies to assess the magnitude of albedo change and the longevity of impact of fire on land surface albedo. In both sites there was a marked decrease of albedo in the year following the fire. In the ARF, albedo slowly increased until 4 years after the fire, when it returned to albedo values prior to the fire. For the year immediately after the fire, a threefold difference in the shortwave albedo decrease was found between the two sites. ARF showed a 45.3% decrease, while the KCF showed a 14.1% decrease in shortwave albedo, and albedo is more variable in the KCF site than ARF site 1 year after the fire. These differences are possibly the result of differences in burn severity of the two fires, wherein the ARF burned more completely with more contiguous patches of complete burn than KCF. The impact of fire on average growing season (April-September) surface shortwave forcing in the year following fire is estimated to be 13.24 ± 6.52 W m-2 at the ARF site, a forcing comparable to studies in other treeless ecosystems. Comparison to boreal studies and the implications to energy flux are discussed in the context of future increases in fire occurrence and severity in a warming climate.

  6. Flowpath Transformations of Precipitation Chemistry in an Arctic Tundra Catchment

    NASA Astrophysics Data System (ADS)

    Quinton, W. L.; Pomeroy, J. W.

    2003-12-01

    This paper traces the drainage pathways followed by rainfall and snowmelt in an actic tundra basin. The major hydrological processes operating within each flowpath segment from the surface of melting snow to the basin outlet are related to changes in the ion chemistry of the water flowing from each segment. In so doing, this paper offers physically-based explanations for the transformation of major ion concentrations and loads of snowmelt water as it travels to the stream outlet in this environment. Despite representing only five percent of the basin water equivalent, snow drifts were found to control the ion chemistry of the water in hillslope flowpaths and in the stream channel. As the initial pulse of ion-rich meltwater was conveyed through hillslope flowpaths, the concentrations of most ions increased, and the duration of peak ionic pulse lengthened. The hillslope runoff process also replaced Na+ and Cl-, the major ions in the percolate with Ca2+ and Mg2+. Over the first three metres of surface flow, concentrations of most ions increased by one to two orders of magnitude, which was roughly equivalent to the concentration increase that resulted from percolation of relatively dilute water through 0.25 m of unsaturated soil. On slopes below a large melting snowdrift, ion concentrations of meltwater flowing in the saturated layer of the soil were very similar to the relatively dilute concentrations found in surface runoff. However, once the snowdrift ablated, sub-surface flow ion concentrations rose steadily above parent meltwater concentrations. Water chemistry in the stream channel strongly resembled that of drainage from adjacent hillslopes. In-channel geochemical processes increased the concentration of most ions with flow distance in the major channel.

  7. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem

    PubMed Central

    Johnston, Eric R.; Rodriguez-R, Luis M.; Luo, Chengwei; Yuan, Mengting M.; Wu, Liyou; He, Zhili; Schuur, Edward A. G.; Luo, Yiqi; Tiedje, James M.; Zhou, Jizhong; Konstantinidis, Konstantinos T.

    2016-01-01

    How soil microbial communities contrast with respect to taxonomic and functional composition within and between ecosystems remains an unresolved question that is central to predicting how global anthropogenic change will affect soil functioning and services. In particular, it remains unclear how small-scale observations of soil communities based on the typical volume sampled (1–2 g) are generalizable to ecosystem-scale responses and processes. This is especially relevant for remote, northern latitude soils, which are challenging to sample and are also thought to be more vulnerable to climate change compared to temperate soils. Here, we employed well-replicated shotgun metagenome and 16S rRNA gene amplicon sequencing to characterize community composition and metabolic potential in Alaskan tundra soils, combining our own datasets with those publically available from distant tundra and temperate grassland and agriculture habitats. We found that the abundance of many taxa and metabolic functions differed substantially between tundra soil metagenomes relative to those from temperate soils, and that a high degree of OTU-sharing exists between tundra locations. Tundra soils were an order of magnitude less complex than their temperate counterparts, allowing for near-complete coverage of microbial community richness (~92% breadth) by sequencing, and the recovery of 27 high-quality, almost complete (>80% completeness) population bins. These population bins, collectively, made up to ~10% of the metagenomic datasets, and represented diverse taxonomic groups and metabolic lifestyles tuned toward sulfur cycling, hydrogen metabolism, methanotrophy, and organic matter oxidation. Several population bins, including members of Acidobacteria, Actinobacteria, and Proteobacteria, were also present in geographically distant (~100–530 km apart) tundra habitats (full genome representation and up to 99.6% genome-derived average nucleotide identity). Collectively, our results revealed

  8. Modeling dynamics of tundra plant communities on the Yamal Peninsula, Russia

    NASA Astrophysics Data System (ADS)

    Yu, Q.; Epstein, H. E.; Walker, D. A.

    2010-12-01

    Multiple environmental drivers, including climate, soil conditions and herbivory, affect arctic tundra vegetation dynamics. These factors may have been evaluated individually in the past; however, their interactions contribute to more complicated tundra plant community dynamics and may represent a substantial source of uncertainty in predicting tundra ecosystem properties in the changing Arctic. This study investigates the effects of soils, grazing, and climate change on tundra plant communities at the plant functional type (PFT) level, based on previous integrated modeling research at the ecosystem level. The study area encompasses the Yamal Peninsula, northwestern Siberia, where soil and biomass data were collected along the Yamal Arctic Transect (YAT), to drive a nutrient-based tundra vegetation model (ArcVeg) and to validate the simulation results. We analyzed plant functional type biomass and net primary productivity (NPP), and found that with higher temperatures (+2°C mean growing season temperature), most plant functional types responded positively with increased biomass and NPP, while grazing suppressed such responses in both high and low soil organic nitrogen (SON) sites. The magnitudes of the responses to warming depended on SON and grazing intensity. Relatively, there were greater responses of biomass and NPP in low SON sites compared to high SON sites. Moss biomass (in contrast to other plant types) declined 34% with warming in the low SON site and 28% in the high SON site in subzone E (the most southern tundra subzone). Increases in Low Arctic shrub biomass with warming were 61% in the high SON site in subzone E and 96% in the low SON site. Decrease in moss biomass due to warming was mitigated about 2% by high grazing frequency (maximum of 25% of biomass removal every two years) in the high SON site in subzone E, with an opposite effect in the low SON site. High grazing frequency caused greater relative increases in total shrub biomass for both low

  9. Response of tundra ecosystems to elevated atmospheric carbon dioxide: Final report

    SciTech Connect

    Oechel, W.C.

    1986-01-01

    This report includes: a detailed description of the system which we have developed for providing control of CO/sub 2/ and temperature; the effects of this treatment on ecosystem fluxes of CO/sub 2/ at ecosystem; the effects of three years CO/sub 2/ enrichment on the photosynthetic response of important tundra species; effects of mineral nutrition and CO/sub 2/ enrichment on growth, photosynthesis, and biomass partitioning of tundra species; and the effects of CO/sub 2/ on soil respiration.

  10. Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.

    PubMed

    Johnston, Eric R; Rodriguez-R, Luis M; Luo, Chengwei; Yuan, Mengting M; Wu, Liyou; He, Zhili; Schuur, Edward A G; Luo, Yiqi; Tiedje, James M; Zhou, Jizhong; Konstantinidis, Konstantinos T

    2016-01-01

    How soil microbial communities contrast with respect to taxonomic and functional composition within and between ecosystems remains an unresolved question that is central to predicting how global anthropogenic change will affect soil functioning and services. In particular, it remains unclear how small-scale observations of soil communities based on the typical volume sampled (1-2 g) are generalizable to ecosystem-scale responses and processes. This is especially relevant for remote, northern latitude soils, which are challenging to sample and are also thought to be more vulnerable to climate change compared to temperate soils. Here, we employed well-replicated shotgun metagenome and 16S rRNA gene amplicon sequencing to characterize community composition and metabolic potential in Alaskan tundra soils, combining our own datasets with those publically available from distant tundra and temperate grassland and agriculture habitats. We found that the abundance of many taxa and metabolic functions differed substantially between tundra soil metagenomes relative to those from temperate soils, and that a high degree of OTU-sharing exists between tundra locations. Tundra soils were an order of magnitude less complex than their temperate counterparts, allowing for near-complete coverage of microbial community richness (~92% breadth) by sequencing, and the recovery of 27 high-quality, almost complete (>80% completeness) population bins. These population bins, collectively, made up to ~10% of the metagenomic datasets, and represented diverse taxonomic groups and metabolic lifestyles tuned toward sulfur cycling, hydrogen metabolism, methanotrophy, and organic matter oxidation. Several population bins, including members of Acidobacteria, Actinobacteria, and Proteobacteria, were also present in geographically distant (~100-530 km apart) tundra habitats (full genome representation and up to 99.6% genome-derived average nucleotide identity). Collectively, our results revealed that

  11. Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis

    PubMed Central

    Woebken, Dagmar; Burow, Luke C; Prufert-Bebout, Leslie; Bebout, Brad M; Hoehler, Tori M; Pett-Ridge, Jennifer; Spormann, Alfred M; Weber, Peter K; Singer, Steven W

    2012-01-01

    N2 fixation is a key process in photosynthetic microbial mats to support the nitrogen demands associated with primary production. Despite its importance, groups that actively fix N2 and contribute to the input of organic N in these ecosystems still remain largely unclear. To investigate the active diazotrophic community in microbial mats from the Elkhorn Slough estuary, Monterey Bay, CA, USA, we conducted an extensive combined approach, including biogeochemical, molecular and high-resolution secondary ion mass spectrometry (NanoSIMS) analyses. Detailed analysis of dinitrogenase reductase (nifH) transcript clone libraries from mat samples that fixed N2 at night indicated that cyanobacterial nifH transcripts were abundant and formed a novel monophyletic lineage. Independent NanoSIMS analysis of 15N2-incubated samples revealed significant incorporation of 15N into small, non-heterocystous cyanobacterial filaments. Mat-derived enrichment cultures yielded a unicyanobacterial culture with similar filaments (named Elkhorn Slough Filamentous Cyanobacterium-1 (ESFC-1)) that contained nifH gene sequences grouping with the novel cyanobacterial lineage identified in the transcript clone libraries, displaying up to 100% amino-acid sequence identity. The 16S rRNA gene sequence recovered from this enrichment allowed for the identification of related sequences from Elkhorn Slough mats and revealed great sequence diversity in this cluster. Furthermore, by combining 15N2 tracer experiments, fluorescence in situ hybridization and NanoSIMS, in situ N2 fixation activity by the novel ESFC-1 group was demonstrated, suggesting that this group may be the most active cyanobacterial diazotroph in the Elkhorn Slough mat. Pyrotag sequences affiliated with ESFC-1 were recovered from mat samples throughout 2009, demonstrating the prevalence of this group. This work illustrates that combining standard and single-cell analyses can link phylogeny and function to identify previously unknown key

  12. Matting of hair: what is the role of conditioners?

    PubMed

    Rigopoulos, D; Kontochristopoulos, G; Kalogirou, O; Gregoriou, S; Katsambas, A

    2006-03-01

    Matting of the hair is a very rare and multifactorial condition affecting usually women. We present three female patients with matting of the hair as a result of the shampoo used. In all three cases, cutting of the affected hair was unavoidable. PMID:16503900

  13. MAT@USC Candidates and Latino English Language Learners

    ERIC Educational Resources Information Center

    Lomeli, Cynthia Leticia

    2012-01-01

    The purpose of this study was to further understand the perceptions of MAT@USC teacher candidates and how their perceptions and previous experiences affect the educational experiences of Latino English language learners. Three questions were developed to guide this study: (1) What are the perceptions of MAT@USC candidates in selected courses…

  14. User`s guide to the MATS data

    SciTech Connect

    Berman, S.

    1990-08-01

    Data collected for the 37 Mesoscale Transport Studies (MATS) experiments are available on a single, double-sided, high-density (1.2MB), IBM-formatted, 5.25 in. floppy disk (MATS disk). Standard ASCII characters are used. This report discusses how to install this disk, symbols used, format of the ratio, and the sample experiment.

  15. Use of constructed mixed microbial mats for landfill leachate treatment

    SciTech Connect

    Goodroad, L.; Bender, J.; Phillips, P.

    1995-12-31

    BIOMAT{trademark} (Mats) is a system of constructed microbial mats which are natural heterotrophic and autotrophic communities dominated by cyanobacteria (blue-green algae). Mats constructed with specific microbial components have been developed for various bioremediation applications: removal of metals, organic degradation, removal of radionuclides, treatment of mixed contaminants, biological treatment ponds, and soil remediation. Based on the potential applications of the constructed microbial mat system, a pilot scale leachate treatment system has been constructed at the Waste Management, Inc. Outer Loop RDF near Louisville, KY in conjunction with M.A.T.S., Inc. The system consists of two lined lagoons with various constructed mat configurations. Changes in leachate chemistry including: pH, dissolved oxygen, color, nitrate/nitrite and ammonium concentration were monitored on influent and effluent leachate streams and within the pilot system to determine operational characteristics of the constructed microbial mat system. The M.A.T.S., Inc. treatment system is expected to reduce capital costs for leachate treatment plants, decrease leachate treatment operating costs, and create a {open_quotes}green{close_quotes} self-contained image for landfills.

  16. Compositions and method of use of constructed microbial mats

    DOEpatents

    Bender, Judith A.; Phillips, Peter C.

    1997-01-01

    Compositions and methods of use of constructed microbial mats, comprising cyanobacteria and purple autotrophic bacteria and an organic nutrient source, in a laminated structure, are described. The constructed microbial mat is used for bioremediation of different individual contaminants and for mixed or multiple contaminants, and for production of beneficial compositions and molecules.

  17. Microbial mats for multiple applications in aquaculture and bioremediation.

    PubMed

    Bender, Judith; Phillips, Peter

    2004-09-01

    Microbial mats occur in nature as stratified communities of cyanobacteria and bacteria, but they can be cultured on large-scale and manipulated for a variety of functions. They are complex systems, but require few external inputs. The functional uses of mats broadly cover the areas of aquaculture and bioremediation. Preliminary research also points to promising uses in agriculture and energy production. Regarding aquaculture, mats were shown to produce protein, via nitrogen fixation, and were capable of supplying nutrition to tilapia (Oreochromis niloticus). Current research is examining the role of mats in the nitrification of nutrient-enriched effluents from aquaculture. Most research has addressed bioremediation, within which two majors categories of contaminants were examined: metals and radionuclides, and organic contaminants. Mats sequester or precipitate metals/radionuclides by surface absorption or by conditioning the surrounding chemical environment, thus bioconcentrating the metal/radionuclide in a small volume. Organic contaminants are degraded and may be completely mineralized. For agriculture mats hold promise as a soil amendment and nitrogen fertilizer. The use of mats in biohydrogen production has been verified, but is in a preliminary phase of development. We propose a comprehensive closed system based on microbial mats for aquaculture and waste management.

  18. The Blazing Arctic? Linkages of Tundra Fire Regimes to Climatic Change and Implications for Carbon Cycling (Invited)

    NASA Astrophysics Data System (ADS)

    Hu, F.; Higuera, P. E.; Walsh, J. E.; Chapman, W.; Duffy, P.; Brubaker, L.; Chipman, M. L.

    2010-12-01

    Among the major challenges in anticipating Arctic changes are “surprises” stemming from changes in system components that have remained relatively stable in the historic record. Tundra burning is potentially one such component. We conducted charcoal analysis of lake sediments from several tundra regions to evaluate the uniqueness of recent tundra fires, and examined potential climatic controls of Alaskan tundra fires from CE 1950-2009. A striking example of tundra burning is the 2007 Anaktuvuk River (AR) Fire, an unusually large fire in the tundra of the Alaskan Arctic. This fire doubled the area burned north of 68 oN in that region since record keeping began in 1950. Analysis of lake-sediment cores reveals peak values of charcoal accumulation corresponding to the AR Fire in 2007, with no evidence of other fire events in that area throughout the past five millennia. However, a number of tundra fires, including one as large as the AR Fire, have occurred over the past 60 years in western Alaska, where average summer temperatures are substantially higher than the AR area. In addition, charcoal analysis of lake sediments from interior and northwestern Alaska suggests that during certain periods of the Late Glacial and Holocene, tundra fire frequencies were as high as those of the modern boreal forests. These records along with the AR and historic fires demonstrate that tundra ecosystems support diverse fire regimes and can burn frequently. Reconciling these dramatic differences in tundra fire regimes requires knowledge of climate-fire relationships. Atmospheric reanalysis suggests that the AR Fire was favored by exceptionally warm/dry weather conditions in summer and early autumn. Boosted regression tree modeling shows that warm, dry summer conditions can explain up to 95% of the inter-annual variability in tundra area burned throughout Alaska over the past 60 years and that the response of tundra burning to climatic warming is non-linear. Additionally, tundra area

  19. Quantitative PCR analysis of functional genes in iron-rich microbial mats at an active hydrothermal vent system (Lō'ihi Seamount, Hawai'i).

    PubMed

    Jesser, Kelsey J; Fullerton, Heather; Hager, Kevin W; Moyer, Craig L

    2015-05-01

    The chemolithotrophic Zetaproteobacteria represent a novel class of Proteobacteria which oxidize Fe(II) to Fe(III) and are the dominant bacterial population in iron-rich microbial mats. Zetaproteobacteria were first discovered at Lō'ihi Seamount, located 35 km southeast off the big island of Hawai'i, which is characterized by low-temperature diffuse hydrothermal venting. Novel nondegenerate quantitative PCR (qPCR) assays for genes associated with microbial nitrogen fixation, denitrification, arsenic detoxification, Calvin-Benson-Bassham (CBB), and reductive tricarboxylic acid (rTCA) cycles were developed using selected microbial mat community-derived metagenomes. Nitrogen fixation genes were not detected, but all other functional genes were present. This suggests that arsenic detoxification and denitrification processes are likely cooccurring in addition to two modes of carbon fixation. Two groups of microbial mat community types were identified by terminal restriction fragment length polymorphism (T-RFLP) and were further described based on qPCR data for zetaproteobacterial abundance and carbon fixation mode preference. qPCR variance was associated with mat morphology but not with temperature or sample site. Geochemistry data were significantly associated with sample site and mat morphology. Together, these qPCR assays constitute a functional gene signature for iron microbial mat communities across a broad array of temperatures, mat types, chemistries, and sampling sites at Lō'ihi Seamount.

  20. Quantitative PCR Analysis of Functional Genes in Iron-Rich Microbial Mats at an Active Hydrothermal Vent System (Lō'ihi Seamount, Hawai'i)

    PubMed Central

    Jesser, Kelsey J.; Fullerton, Heather; Hager, Kevin W.

    2015-01-01

    The chemolithotrophic Zetaproteobacteria represent a novel class of Proteobacteria which oxidize Fe(II) to Fe(III) and are the dominant bacterial population in iron-rich microbial mats. Zetaproteobacteria were first discovered at Lō'ihi Seamount, located 35 km southeast off the big island of Hawai'i, which is characterized by low-temperature diffuse hydrothermal venting. Novel nondegenerate quantitative PCR (qPCR) assays for genes associated with microbial nitrogen fixation, denitrification, arsenic detoxification, Calvin-Benson-Bassham (CBB), and reductive tricarboxylic acid (rTCA) cycles were developed using selected microbial mat community-derived metagenomes. Nitrogen fixation genes were not detected, but all other functional genes were present. This suggests that arsenic detoxification and denitrification processes are likely cooccurring in addition to two modes of carbon fixation. Two groups of microbial mat community types were identified by terminal restriction fragment length polymorphism (T-RFLP) and were further described based on qPCR data for zetaproteobacterial abundance and carbon fixation mode preference. qPCR variance was associated with mat morphology but not with temperature or sample site. Geochemistry data were significantly associated with sample site and mat morphology. Together, these qPCR assays constitute a functional gene signature for iron microbial mat communities across a broad array of temperatures, mat types, chemistries, and sampling sites at Lō'ihi Seamount. PMID:25681182

  1. Algal Species and Light Microenvironment in a Low-pH, Geothermal Microbial Mat Community

    PubMed Central

    Ferris, M. J.; Sheehan, K. B.; Kühl, M.; Cooksey, K.; Wigglesworth-Cooksey, B.; Harvey, R.; Henson, J. M.

    2005-01-01

    Unicellular algae are the predominant microbial mat-forming phototrophs in the extreme environments of acidic geothermal springs. The ecology of these algae is not well known because concepts of species composition are inferred from cultivated isolates and microscopic observations, methods known to provide incomplete and inaccurate assessments of species in situ. We used sequence analysis of 18S rRNA genes PCR amplified from mat samples from different seasons and different temperatures along a thermal gradient to identify algae in an often-studied acidic (pH 2.7) geothermal creek in Yellowstone National Park. Fiber-optic microprobes were used to show that light for algal photosynthesis is attenuated to <1% over the 1-mm surface interval of the mat. Three algal sequences were detected, and each was present year-round. A Cyanidioschyzon merolae sequence was predominant at temperatures of ≥49°C. A Chlorella protothecoides var. acidicola sequence and a Paradoxia multisita-like sequence were predominant at temperatures of ≤39°C. PMID:16269755

  2. Pressure influence on the structural characteristics of modified absorptive glass mat separators: A standard contact porosimetry study

    NASA Astrophysics Data System (ADS)

    Burashnikova, M. M.; Khramkova, T. S.; Kazarinov, I. A.; Shmakov, S. L.

    2015-09-01

    The article presents a comparative analysis of the structural characteristics of absorptive glass mats manufactured by "Hollingsworth & Vose" (a 2.8 mm thickness) and "Bernard Dumas" (a 3.0 mm thickness) modified by impregnation with polymeric emulsions based on polyvinylidene fluoride, a polyvinylpyrrolidone styrene copolymer, and polytetrafluoroethylene, by means of standard contact porosimetry. The key study is influence of features of the porous structure on the compression properties, the rate of wicking, and the oxygen cycle efficiency in lead-acid battery mock-ups under several plate-group compression pressures. It is found that the treatment of the absorptive glass mat separators with polymeric emulsions leads to redistribution of their pores by size. An increased pressure in the electrode unit insignificantly changes the pore structure of the modified absorptive glass mat separators, and the oxygen cycle efficiency rises in comparison with unmodified separators.

  3. Chlorophyll and carotenoid pigments in solar saltern microbial mats

    NASA Astrophysics Data System (ADS)

    Villanueva, Joan; Grimalt, Joan O.; de Wit, Rutger; Keely, Brendan J.; Maxwell, James R.

    1994-11-01

    The distributions of carotenoids, chlorophylls, and their degradation products have been studied in two microbial mat systems developed in the calcite and calcite/gypsum evaporite domains of a solar saltern system. Phormidium valderianum and Microcoleus chthonoplastes are the dominant cyanobacterial species, respectively, and large amounts of Chloroflexus-like bacteria occur in the carbonate/gypsum mat. In both systems, the major pigments are chlorophyll a, zeaxanthin, β-carotene and myxoxanthophyll, which originate from these mat-building cyanobacteria. This common feature contrasts with differences in other pigments that are specific for each mat community. Thus, chlorophyll c and fucoxanthin, reflecting diatom inputs, are only found in the calcite mat, whereas the calcite/gypsum mat contains high concentrations of bacteriochlorophylls c produced by the multicellular green filamentous bacteria. In both cases, the depth concentration profiles (0-30 and 0-40 mm) show a relatively good preservation of the cyanobacterial carotenoids, zeaxanthin, β-carotene, myxoxanthophyll, and echinenone. This contrasts with the extensive biodegradation of cyanobacterial remains observed microscopically. Fucoxanthin in the calcite mat is also transformed at a faster rate than the cyanobacterial carotenoids. Chlorophyll a, the major pigment in both mats, exhibits different transformation pathways. In the calcite/gypsum mat, it is transformed via C-13 2 carbomethoxy defunctionalization prior to loss of the phytyl chain, leading to the formation of pyrophaeophytin a and, subsequently, pyrophaeophorbide a. On the other hand, the occurrence of the enzyme chlorophyllase, attributed to diatoms in the calcite mat, gives rise to extensive phytyl hydrolysis, with the formation of chlorophyllide a, pyrophaeophorbide a and, in minor proportion, phaeophorbide a. Studies of the sources of the photosynthetic pigments and of their transformation pathways in such simplified ecosystems provide a

  4. Benthic Marine Cyanobacterial Mat Ecosystems: Biogeochemistry and Biomarkers

    NASA Technical Reports Server (NTRS)

    DesMarais, David J.; DeVincenzi, Donald (Technical Monitor)

    2001-01-01

    Cyanobacterial mats are complete ecosystems that can include processes of primary production, diagenesis and lithification. Light sustains oxygenic photosynthesis, which in turn provides energy, organic matter and oxygen to the community. Due to both absorption and scattering phenomena, incident light is transformed with depth in the mat, both in intensity and spectral composition. Mobile photo synthesizers optimize their position with respect to this light gradient. When photosynthesis ceases at night, the upper layers of the mat become reduced and sulfidic. Counteracting gradients of oxygen and sulfide combine to provide daily-contrasting environments separated on a scale of a few mm. The functional complexity of mats, coupled with the highly proximal and ordered spatial arrangement of biota, offers the potential for a staggering number of interactions. At a minimum, the products of each functional group of microorganisms affect the other groups both positively and negatively. For example, cyanobacteria generate organic matter (potential substrates) but also oxygen (a toxin for many anaerobes). Anaerobic activity recycles nutrients to the photosynthesizers but also generates potentially toxic sulfide. The combination of benefits and hazards of light, oxygen and sulfide promotes the allocation of the various essential mat processes between light and dark periods, and to various depths in the mat. Observations of mats have produced numerous surprises. For example, obligately anaerobic processes can occur in the presence of abundant oxygen, highly reduced gases are produced in the presence of abundant sulfate, meiofauna thrive at high sulfide concentrations, and the mats' constituent populations respond to environmental changes in complex ways. While photosynthetic bacteria dominate the biomass and productivity of the mat, nonphotosynthetic, anaerobic processes constitute the ultimate biological filter on the ecosystem's emergent biosignatures, including those

  5. Elastic-plastic behavior of non-woven fibrous mats

    NASA Astrophysics Data System (ADS)

    Silberstein, Meredith N.; Pai, Chia-Ling; Rutledge, Gregory C.; Boyce, Mary C.

    2012-02-01

    Electrospinning is a novel method for creating non-woven polymer mats that have high surface area and high porosity. These attributes make them ideal candidates for multifunctional composites. Understanding the mechanical properties as a function of fiber properties and mat microstructure can aid in designing these composites. Further, a constitutive model which captures the membrane stress-strain behavior as a function of fiber properties and the geometry of the fibrous network would be a powerful design tool. Here, mats electrospun from amorphous polyamide are used as a model system. The elastic-plastic behavior of single fibers are obtained in tensile tests. Uniaxial monotonic and cyclic tensile tests are conducted on non-woven mats. The mat exhibits elastic-plastic stress-strain behavior. The transverse strain behavior provides important complementary data, showing a negligible initial Poisson's ratio followed by a transverse:axial strain ratio greater than -1:1 after an axial strain of 0.02. A triangulated framework has been developed to emulate the fibrous network structure of the mat. The micromechanically based model incorporates the elastic-plastic behavior of single fibers into a macroscopic membrane model of the mat. This representative volume element based model is shown to capture the uniaxial elastic-plastic response of the mat under monotonic and cyclic loading. The initial modulus and yield stress of the mat are governed by the fiber properties, the network geometry, and the network density. The transverse strain behavior is linked to discrete deformation mechanisms of the fibrous mat structure including fiber alignment, fiber bending, and network consolidation. The model is further validated in comparison to experiments under different constrained axial loading conditions and found to capture the constraint effect on stiffness, yield, post-yield hardening, and post-yield transverse strain behavior. Due to the direct connection between

  6. Deeper winter snow reduces ecosystem C losses but increases the global warming potential of Arctic tussock tundra over the growing season.

    NASA Astrophysics Data System (ADS)

    Blanc-Betes, E.; Welker, J. M.; Gomez-Casanovas, N.; Gonzalez-Meler, M. A.

    2015-12-01

    Arctic winter precipitation is projected to increase globally over the next decades, spatial variability encompassing areas with increases and decreases in winter snow. Changes in winter precipitation strongly affect C dynamics in Arctic systems and may lead to major positive climate forcing feedbacks. However, impacts of predicted changes in snowfall and accumulation on the rate and form of C fluxes (CO2 and CH4) and associated forcing feedbacks from Arctic tundra remain uncertain. We investigated how changes in winter precipitation affect net ecosystem CO2 and CH4 fluxes and budgets of moist acidic tundra in an 18-yrs snow fence experiment over a complete growing season at Toolik Lake, AK. Arctic tundra under ambient winter precipitation (CTL) was a net source of CO2 and CH4, yielding net C losses over the growing season. Reduced snow (-15-30% snow depth; RS) switched the system to a net CO2 sink mostly by limiting SOC decomposition within colder soils. Snow additions progressively reduced net ecosystem CO2 losses compared to CTL, switching the system into a weaker net CO2 source with medium additions (+20-45% snow depth; MS) and into a small net CO2 sink with high additions (+70-100% snow depth; HS). Increasingly wetter soils with snow additions constrained the temperature sensitivity of aerobic decomposition and favored the anaerobic metabolism, buffering ecosystem CO2 losses despite substantial soil warming. Accordingly, Arctic tundra switched from a sustained CH4 sink at RS site to an increasingly stronger CH4 source with snow additions. Accounting for both CO2 and CH4, the RS site became a net C sink over the growing season, overall reducing the global warming potential (CO2 equiv.; GWP) of the system relative to CTL. Snow additions progressively reduced net C losses at the MS site compared to CTL and the system transitioned into a net C sink at HS plots, partly due to the slower metabolism of anaerobic decomposition. However, given the greater radiative

  7. Lipid Biomarkers and Carbon Isotope Signatures of a Microbial (Beggiatoa) Mat Associated with Gas Hydrates in the Gulf of Mexico

    PubMed Central

    Zhang, Chuanlun L.; Huang, Zhiyong; Cantu, James; Pancost, Richard D.; Brigmon, Robin L.; Lyons, Timothy W.; Sassen, Roger

    2005-01-01

    White and orange mats are ubiquitous on surface sediments associated with gas hydrates and cold seeps in the Gulf of Mexico. The goal of this study was to determine the predominant pathways for carbon cycling within an orange mat in Green Canyon (GC) block GC 234 in the Gulf of Mexico. Our approach incorporated laser-scanning confocal microscopy, lipid biomarkers, stable carbon isotopes, and 16S rRNA gene sequencing. Confocal microscopy showed the predominance of filamentous microorganisms (4 to 5 μm in diameter) in the mat sample, which are characteristic of Beggiatoa. The phospholipid fatty acids extracted from the mat sample were dominated by 16:1ω7c/t (67%), 18:1ω7c (17%), and 16:0 (8%), which are consistent with lipid profiles of known sulfur-oxidizing bacteria, including Beggiatoa. These results are supported by the 16S rRNA gene analysis of the mat material, which yielded sequences that are all related to the vacuolated sulfur-oxidizing bacteria, including Beggiatoa, Thioploca, and Thiomargarita. The δ13C value of total biomass was −28.6‰; those of individual fatty acids were −29.4 to −33.7‰. These values suggested heterotrophic growth of Beggiatoa on organic substrates that may have δ13C values characteristic of crude oil or on their by-products from microbial degradation. This study demonstrated that integrating lipid biomarkers, stable isotopes, and molecular DNA could enhance our understanding of the metabolic functions of Beggiatoa mats in sulfide-rich marine sediments associated with gas hydrates in the Gulf of Mexico and other locations. PMID:15812044

  8. Identification And Survival Of Bacteriohopanepolyol In A Hot Spring Microbial Mat

    NASA Technical Reports Server (NTRS)

    Janke, Linda L.; Chang, Sherwood (Technical Monitor)

    1995-01-01

    The polar lipids of a hot spring microbial mat located in Yellowstone National Park were examined for the presence of bacteriohopanepolvols (BHP). BHP are a group of molecules consisting of a hopanoid (peotacyclic triterpene) linked via a n-alkyl polyhydroxylated chain to a variety of polar end groups. BHP have been isolated in varying amounts from phylogenetically diverse eubacterial groups including cyanobacteria, methanotrophs and the Rhodospirillaceae. The hopanoids are excellent biomarkers and have been detected in sedimentary rocks as old as 1.7 bya. In order to interpret the ancient organic record, it is important to understand the abundance, source and fate of such biomarker compounds in microbial mats. A 40 sq cm mat section was taken from a 52 to 55 C site in the effluent channel of Octopus Spring and was sampled vertically over approximately 16 mm. The first 5-6 mm was sectioned into a top green layer (310 mg dry weight) and several subjacent, deep orange layers (240 and 250 mg, respectively). The lower 10 mm of the mat was sectioned into two gelatinous orange layers containing a siliceous gritty material (260 and 440 mg) which increased with depth, and a bottom layer composed almost exclusively of siliceous sinter (4.1 g). The progressive decrease in total organic carbon from 45% in the top green layer to only 4% in the bottom layer reflects the observed increase in siliceous deposition. GC-MS analysis of the phospholipid and glycolipid fatty acids yielded predominantly saturated normal chain acids, n-15 to n-18, and iso-branched acids, i-15 to i-17. Small amounts of unsaturated fatty acids (16:1, two positional isomers of 18:1, and two cyclopropyl acids, C(sub 17) and C(sub 19)) were present mainly in the top layer. Esterified fatty acid which is a good index for intact cellular membrane, i.e. viable organisms, was highest in the top two layers (203 and 231 micro g/mg total lipid, respectively) and gradually decreased to 66 micro g/mg total lipid in

  9. The footprint of Alaskan tundra fires during the past half-century: implications for surface properties and radiative forcing

    USGS Publications Warehouse

    Rocha, Adrian V.; Loranty, Michael M.; Higuera, Phil E.; Mack, Michelle C.; Hu, Feng Sheng; Jones, Benjamin M.; Breen, Amy L.; Rastetter, Edward B.; Goetz, Scott J.; Shaver, Gus R.

    2012-01-01

    Recent large and frequent fires above the Alaskan arctic circle have forced a reassessment of the ecological and climatological importance of fire in arctic tundra ecosystems. Here we provide a general overview of the occurrence, distribution, and ecological and climate implications of Alaskan tundra fires over the past half-century using spatially explicit climate, fire, vegetation and remote sensing datasets for Alaska. Our analyses highlight the importance of vegetation biomass and environmental conditions in regulating tundra burning, and demonstrate that most tundra ecosystems are susceptible to burn, providing the environmental conditions are right. Over the past two decades, fire perimeters above the arctic circle have increased in size and importance, especially on the North Slope, indicating that future wildfire projections should account for fire regime changes in these regions. Remote sensing data and a literature review of thaw depths indicate that tundra fires have both positive and negative implications for climatic feedbacks including a decadal increase in albedo radiative forcing immediately after a fire, a stimulation of surface greenness and a persistent long-term (>10 year) increase in thaw depth. In order to address the future impact of tundra fires on climate, a better understanding of the control of tundra fire occurrence as well as the long-term impacts on ecosystem carbon cycling will be required.

  10. A Recombinationally Repressed Region between Mat2 and Mat3 Loci Shares Homology to Centromeric Repeats and Regulates Directionality of Mating-Type Switching in Fission Yeast

    PubMed Central

    Grewal, SIS.; Klar, AJS.

    1997-01-01

    Cells of the fission yeast Schizosaccharomyces pombe switch mating type by replacing genetic information at the transcriptionally active mat1 locus with sequences copied from one of two closely linked silent loci, mat2-P or mat3-M. By a process referred to as directionality of switching, cells predominantly switch to the opposite mat1 allele; the mat1-P allele preferentially recombines with mat3, while mat1-M selects the mat2. In contrast to efficient recombination at mat1, recombination within the adjoining mat2-mat3 interval is undetectable. We defined the role of sequences between mat2 and mat3, designated the K-region, in directionality as well as recombinational suppression. Cloning and sequencing analysis revealed that a part of the K-region is homologous to repeat sequences present at centromeres, which also display transcriptional and recombinational suppression. Replacement of 7.5 kb of the K-region with the ura4(+) gene affected directionality in a variegated manner. Analysis of the swi6-mod locus, which was previously shown to affect directionality, in KΔ::ura4(+) strains suggested the existence of at least two overlapping directionality mechanisms. Our work furthers the model that directionality is regulated by cell-type-specific organization of the heterochromatin-like structure in the mating-type region and provides evidence that the K-region contributes to silencing of the mat2-mat3 interval. PMID:9258669

  11. Estimating carbon and energy fluxes in arctic tundra

    NASA Astrophysics Data System (ADS)

    Gokkaya, K.; Jiang, Y.; Rastetter, E.; Shaver, G. R.; Rocha, A. V.

    2013-12-01

    Arctic ecosystems are undergoing a very rapid change due to climate change and their response to climate change has important implications for the global energy budget and carbon (C) cycling. Therefore, it is important to understand how (C) and energy fluxes in the Arctic will respond to climate change. However, attribution of these responses to climate is challenging because measured fluxes are the sum of multiple processes that respond differently to environmental factors. For example, net ecosystem exchange of CO2 (NEE) is the net result of gross (C) uptake by plant photosynthesis (GPP) and (C) loss by ecosystem respiration (ER) and similarly, evapotranspiration (i.e. latent energy, LE) is the sum of transpiration and evaporation. Partitioning of NEE into GPP and ER requires nighttime measurements of NEE, when photosynthesis does not take place, to be extrapolated to daytime. This is challenging in the Arctic because of the long photoperiod during the growing season and the errors involved during the extrapolation. Transpiration (energy), photosynthesis (carbon), and vegetation phenology are inherently coupled because leaf stomata are the primary regulators of gas exchange. Our objectives in this study are to i) estimate canopy resistance (Rc) based on a light use efficiency model, ii) utilize the estimated Rc to predict GPP and transpiration using a coupled C and energy model and thus improve the partitioning of NEE and LE, and iii) to test ensemble Kalman filter (EnKF) to estimate model parameters and improve model predictions. Results from one growing season showed that the model predictions can explain 75 and 71% of the variance in GPP and LE in the Arctic tundra ecosystem, respectively. When the model was embedded within the EnKF for estimating Rc, the amount of variance explained for GPP increased to 81% but there was no improvement for the prediction of LE. This suggests that the factors controlling LE are not fully integrated in the model such as the

  12. Methane production in sediments of small tundra ponds during winter

    NASA Astrophysics Data System (ADS)

    Macrae, M. L.; Fishback, L.; Bourbonniere, R. A.; Duguay, C. R.; Soliman, A. S.

    2011-12-01

    Shallow tundra ponds in the Churchill region of the Hudson Bay Lowlands (HBL) store large quantities of organic material in the form of sediments. Organic sediments in ponds and wetlands have been identified as a source of atmospheric methane (CH4) during the summer season in many landscapes. However, less is known about CH4 production and emission during the winter months, following the formation of an ice layer on the water surface. Unfrozen sediments may continue to produce methane (CH4) during this time, which may become trapped in the ponds beneath the ice layer. This occurrence has been identified in some regions through the sampling and analysis of CH4 bubbles frozen in lake ice. The goal of this project is to examine the potential for the production and trapping of CH4 in ponds beneath the pond ice (water/ice and sediment profiles) in the Churchill region of the HBL. Thermistor and gas sampling arrays were installed in the water and sediments of two ponds. Gas samples were collected at 1-4 week intervals at the sediment-water interface and at 0-15cm and 20-35 cm depth. Results show that sediments are indeed thawed for 3-4 months of the winter season, and deeper sediments remain within the range of 0 to -5 C whereas shallow sediment temperatures ranged between 10 and -10 C over an annual cycle. Laboratory experiments showed that little difference in CH4 production was observed at sediment temperatures between -2 and 5 C, whereas production was very low at -10 C. No significant differences in CH4 production rates were observed for different sediment depths in the laboratory. Field data collected between August 2010 and June 2011 showed consistent accumulation of CH4 in sediments following the formation of an ice layer on pond surfaces. However, CH4 concentrations in gas samplers decreased in February through April after sediments were frozen, but began to increase again (May-June) as sediments thawed and began to warm. Future work will include the examination

  13. Transformations Of Runoff Chemistry In An Arctic Tundra Catchment

    NASA Astrophysics Data System (ADS)

    Quinton, W. L.; Pomeroy, J. W.

    2004-05-01

    This paper traces the transformation of snow meltwater chemical composition during melt, elution and runoff in an Arctic tundra basin. The chemistry of the water flowing through pathway segments from the surface of melting snow to the basin outlet are related to the relevant hydrological processes. In so doing, this paper offers physically-based explanations for the transformation of major ion concentrations and loads of runoff water arising from snowmelt and rainfall input as it travels to the stream outlet in this environment. Late-lying snow drifts were found to greatly influence the ion chemistry in adjacent reaches of the stream channel. As the initial pulse of ion-rich meltwater drained from the drift and was conveyed through hillslope flowpaths, the concentrations of most ions increased, and the duration of peak ionic pulse lengthened. Over the first three metres of surface flow, the concentrations of all ions except for NO3- increased by one to two orders of magnitude, with the largest increase occurring for K+, Ca2+ and Mg2+. This was roughly equivalent to the concentration increase that resulted from percolation of relatively dilute water through 0.25 m of unsaturated soil. The hillslope runoff pathways replaced Na+ and Cl-, the major ions in the snow melt percolate arriving at the ground surface with Ca2+ and Mg2+. On slopes below a large melting snowdrift, ion concentrations of meltwater flowing in the saturated layer of the soil were very similar to the relatively dilute concentrations found in surface runoff. However, once the snowdrift ablated, sub-surface flow ion concentrations rose steadily above parent meltwater concentrations. Three seasonally-characteristic hydro-chemical regimes were identified in a stream reach adjacent to late-lying drifts. In the first two stages, the water chemistry in the stream channel strongly resembled that of the hillslope drainage water. In the third stage, in-stream geochemical processes, particularly weathering of

  14. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

    PubMed Central

    Kim, Young-Mo; Nowack, Shane; Olsen, Millie T.; Becraft, Eric D.; Wood, Jason M.; Thiel, Vera; Klapper, Isaac; Kühl, Michael; Fredrickson, James K.; Bryant, Donald A.; Ward, David M.; Metz, Thomas O.

    2015-01-01

    Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptive and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics for understanding community response to such changing environmental conditions. In this study, we quantified volatile organic acids, polar metabolites (amino acids, glycolytic and citric acid cycle intermediates, nucleobases, nucleosides, and sugars), wax esters, and polyhydroxyalkanoates, resulting in the identification of 104 metabolites and related molecules in thermal chlorophototrophic microbial mat cores collected over a diel cycle in Mushroom Spring, Yellowstone National Park. A limited number of predominant taxa inhabit this community and their functional potentials have been previously identified through metagenomic and metatranscriptomic analyses and in situ metabolisms, and metabolic interactions among these taxa have been hypothesized. Our metabolomics results confirmed the diel cycling of photorespiration (e.g., glycolate) and fermentation (e.g., acetate, propionate, and lactate) products, the carbon storage polymers polyhydroxyalkanoates, and dissolved gasses (e.g., H2 and CO2) in the waters overlying the mat, which were hypothesized to occur in major mat chlorophototrophic community members. In addition, we have formulated the following new hypotheses: (1) the morning hours are a time of biosynthesis of amino acids, DNA, and RNA; (2) photo-inhibited cells may also produce lactate via fermentation as an alternate metabolism; (3) glycolate and lactate are exchanged among Synechococcus and Roseiflexus spp.; and (4) fluctuations in many metabolite pools (e.g., wax esters) at different times of day result from species found at different depths within the mat responding to temporal differences in their niches. PMID:25941514

  15. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

    DOE PAGES

    Kim, Young-Mo; Nowack, Shane; Olsen, Millie; Becraft, Eric; Wood, Jason M.; Thiel, Vera; Klapper, Isaac; Kuhl, Michael; Fredrickson, Jim K.; Bryant, Donald A.; et al

    2015-04-17

    Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptative and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics for understanding community response to such changing environmental conditions. In this study, we quantified volatile organic acids, polar metabolites (amino acids, glycolytic and citric acid cycle intermediates, nucleobases, nucleosides, and sugars), wax esters, and polyhydroxyalkanoates, resulting in the identification of 104 metabolites and related molecules in thermal chlorophototrophic microbial mat cores collected over a diel cycle in Mushroom Spring, Yellowstone National Park. A limited number ofmore » predominant taxa inhabiting this community and their functional potentials have been previously identified through metagenomic and metatranscriptomic analyses and in situ metabolisms and metabolic interactions among these taxa have been hypothesized. Our metabolomics results confirmed the diel cycling of photorespiration (e.g. glycolate) and fermentation (e.g. acetate, propionate, and lactate) products, the carbon storage polymers polyhydroxyalkanoates, and dissolved gases (e.g. H2 and CO2) in the waters overlying the mat, which were hypothesized to occur in major mat chlorophototrophic community members. In addition, we have formulated the following new hypotheses: 1) the morning hours are a time of biosynthesis of amino acids, DNA, and RNA; 2) Synechococcus spp. produce CH4 via metabolism of phosphonates, and photo-inhibited cells may also produce lactate via fermentation as an alternate metabolism; 3) glycolate and lactate are exchanged among Synechococcus and Roseiflexus spp.; and 4) fluctuations in many metabolite pools (e.g. wax esters) at different times of day result from species found at different depths within the mat responding to temporal differences

  16. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms

    SciTech Connect

    Kim, Young-Mo; Nowack, Shane; Olsen, Millie; Becraft, Eric; Wood, Jason M.; Thiel, Vera; Klapper, Isaac; Kuhl, Michael; Fredrickson, Jim K.; Bryant, Donald A.; Ward, David M.; Metz, Thomas O.

    2015-04-17

    Dynamic environmental factors such as light, nutrients, salt, and temperature continuously affect chlorophototrophic microbial mats, requiring adaptative and acclimative responses to stabilize composition and function. Quantitative metabolomics analysis can provide insights into metabolite dynamics for understanding community response to such changing environmental conditions. In this study, we quantified volatile organic acids, polar metabolites (amino acids, glycolytic and citric acid cycle intermediates, nucleobases, nucleosides, and sugars), wax esters, and polyhydroxyalkanoates, resulting in the identification of 104 metabolites and related molecules in thermal chlorophototrophic microbial mat cores collected over a diel cycle in Mushroom Spring, Yellowstone National Park. A limited number of predominant taxa inhabiting this community and their functional potentials have been previously identified through metagenomic and metatranscriptomic analyses and in situ metabolisms and metabolic interactions among these taxa have been hypothesized. Our metabolomics results confirmed the diel cycling of photorespiration (e.g. glycolate) and fermentation (e.g. acetate, propionate, and lactate) products, the carbon storage polymers polyhydroxyalkanoates, and dissolved gases (e.g. H2 and CO2) in the waters overlying the mat, which were hypothesized to occur in major mat chlorophototrophic community members. In addition, we have formulated the following new hypotheses: 1) the morning hours are a time of biosynthesis of amino acids, DNA, and RNA; 2) Synechococcus spp. produce CH4 via metabolism of phosphonates, and photo-inhibited cells may also produce lactate via fermentation as an alternate metabolism; 3) glycolate and lactate are exchanged among Synechococcus and Roseiflexus spp.; and 4) fluctuations in many metabolite pools (e.g. wax esters) at different times of day result from species found at different depths within the mat responding to temporal differences in their

  17. CLIMATIC EFFECTS ON TUNDRA CARBON STORAGE INFERRED FROM EXPERIMENTAL DATA AND A MODEL

    EPA Science Inventory

    We used a process-based model of ecosystem carbon (C) and nitrogen (N)dynamics, MBL-GEM (Marine Biological Laboratory General Ecosystem Model), to integrated and analyze the results of several experiments that examined the response of arctic tussock tundra to manipulations of CO2...

  18. Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time.

    PubMed

    Elmendorf, Sarah C; Henry, Gregory H R; Hollister, Robert D; Björk, Robert G; Bjorkman, Anne D; Callaghan, Terry V; Collier, Laura Siegwart; Cooper, Elisabeth J; Cornelissen, Johannes H C; Day, Thomas A; Fosaa, Anna Maria; Gould, William A; Grétarsdóttir, Járngerður; Harte, John; Hermanutz, Luise; Hik, David S; Hofgaard, Annika; Jarrad, Frith; Jónsdóttir, Ingibjörg Svala; Keuper, Frida; Klanderud, Kari; Klein, Julia A; Koh, Saewan; Kudo, Gaku; Lang, Simone I; Loewen, Val; May, Jeremy L; Mercado, Joel; Michelsen, Anders; Molau, Ulf; Myers-Smith, Isla H; Oberbauer, Steven F; Pieper, Sara; Post, Eric; Rixen, Christian; Robinson, Clare H; Schmidt, Niels Martin; Shaver, Gaius R; Stenström, Anna; Tolvanen, Anne; Totland, Orjan; Troxler, Tiffany; Wahren, Carl-Henrik; Webber, Patrick J; Welker, Jeffery M; Wookey, Philip A

    2012-02-01

    Understanding the sensitivity of tundra vegetation to climate warming is critical to forecasting future biodiversity and vegetation feedbacks to climate. In situ warming experiments accelerate climate change on a small scale to forecast responses of local plant communities. Limitations of this approach include the apparent site-specificity of results and uncertainty about the power of short-term studies to anticipate longer term change. We address these issues with a synthesis of 61 experimental warming studies, of up to 20 years duration, in tundra sites worldwide. The response of plant groups to warming often differed with ambient summer temperature, soil moisture and experimental duration. Shrubs increased with warming only where ambient temperature was high, whereas graminoids increased primarily in the coldest study sites. Linear increases in effect size over time were frequently observed. There was little indication of saturating or accelerating effects, as would be predicted if negative or positive vegetation feedbacks were common. These results indicate that tundra vegetation exhibits strong regional variation in response to warming, and that in vulnerable regions, cumulative effects of long-term warming on tundra vegetation - and associated ecosystem consequences - have the potential to be much greater than we have observed to date. PMID:22136670

  19. Assessing the Tundra-taiga Boundary with Multi-Sensor Satellite Data

    NASA Technical Reports Server (NTRS)

    Ranson, K. J.; Sun, G.; Kharuk, V. I.; Kovacs, K.

    2004-01-01

    Monitoring the dynamics of the circumpolar boreal forest (taiga) and Arctic tundra boundary is important for understanding the causes and consequences of changes observed in these areas. This ecotone, the world's largest, stretches for over 13,400 km and marks the transition between the northern limits of forests and the southern margin of the tundra. Because of the inaccessibility and large extent of this zone, remote sensing data can play an important role for mapping the characteristics and monitoring the dynamics. Basic understanding of the capabilities of existing space borne instruments for these purposes is required. In this study we examined the use of several remote sensing techniques for identifying the existing tundra- taiga ecotone. These include Landsat-7, MISR, MODIS and RADARSAT data. Historical cover maps, recent forest stand measurements and high-resolution IKONOS images were used for local ground truth. It was found that a tundra-taiga transitional area can be characterized using multi- spectral Landsat ETM+ summer images, multi-angle MISR red band reflectance images, RADARSAT images with larger incidence angle, or multi-temporal and multi-spectral MODIS data. Because of different resolutions and spectral regions covered, the transition zone maps derived from different data types were not identical, but the general patterns were consistent.

  20. Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time.

    PubMed

    Elmendorf, Sarah C; Henry, Gregory H R; Hollister, Robert D; Björk, Robert G; Bjorkman, Anne D; Callaghan, Terry V; Collier, Laura Siegwart; Cooper, Elisabeth J; Cornelissen, Johannes H C; Day, Thomas A; Fosaa, Anna Maria; Gould, William A; Grétarsdóttir, Járngerður; Harte, John; Hermanutz, Luise; Hik, David S; Hofgaard, Annika; Jarrad, Frith; Jónsdóttir, Ingibjörg Svala; Keuper, Frida; Klanderud, Kari; Klein, Julia A; Koh, Saewan; Kudo, Gaku; Lang, Simone I; Loewen, Val; May, Jeremy L; Mercado, Joel; Michelsen, Anders; Molau, Ulf; Myers-Smith, Isla H; Oberbauer, Steven F; Pieper, Sara; Post, Eric; Rixen, Christian; Robinson, Clare H; Schmidt, Niels Martin; Shaver, Gaius R; Stenström, Anna; Tolvanen, Anne; Totland, Orjan; Troxler, Tiffany; Wahren, Carl-Henrik; Webber, Patrick J; Welker, Jeffery M; Wookey, Philip A

    2012-02-01

    Understanding the sensitivity of tundra vegetation to climate warming is critical to forecasting future biodiversity and vegetation feedbacks to climate. In situ warming experiments accelerate climate change on a small scale to forecast responses of local plant communities. Limitations of this approach include the apparent site-specificity of results and uncertainty about the power of short-term studies to anticipate longer term change. We address these issues with a synthesis of 61 experimental warming studies, of up to 20 years duration, in tundra sites worldwide. The response of plant groups to warming often differed with ambient summer temperature, soil moisture and experimental duration. Shrubs increased with warming only where ambient temperature was high, whereas graminoids increased primarily in the coldest study sites. Linear increases in effect size over time were frequently observed. There was little indication of saturating or accelerating effects, as would be predicted if negative or positive vegetation feedbacks were common. These results indicate that tundra vegetation exhibits strong regional variation in response to warming, and that in vulnerable regions, cumulative effects of long-term warming on tundra vegetation - and associated ecosystem consequences - have the potential to be much greater than we have observed to date.

  1. Importance of Marine-Derived Nutrients Supplied by Planktivorous Seabirds to High Arctic Tundra Plant Communities.

    PubMed

    Zwolicki, Adrian; Zmudczyńska-Skarbek, Katarzyna; Richard, Pierre; Stempniewicz, Lech

    2016-01-01

    We studied the relative importance of several environmental factors for tundra plant communities in five locations across Svalbard (High Arctic) that differed in geographical location, oceanographic and climatic influence, and soil characteristics. The amount of marine-derived nitrogen in the soil supplied by seabirds was locally the most important of the studied environmental factors influencing the tundra plant community. We found a strong positive correlation between δ15N isotopic values and total N content in the soil, confirming the fundamental role of marine-derived matter to the generally nutrient-poor Arctic tundra ecosystem. We also recorded a strong correlation between the δ15N values of soil and of the tissues of vascular plants and mosses, but not of lichens. The relationship between soil δ15N values and vascular plant cover was linear. In the case of mosses, the percentage ground cover reached maximum around a soil δ 15N value of 8‰, as did plant community diversity. This soil δ15N value clearly separated the occurrence of plants with low nitrogen tolerance (e.g. Salix polaris) from those predominating on high N content soils (e.g. Cerastium arcticum, Poa alpina). Large colonies of planktivorous little auks have a great influence on Arctic tundra vegetation, either through enhancing plant abundance or in shaping plant community composition at a local scale. PMID:27149113

  2. Determining Regional Arctic Tundra Carbon Exchange: A Bottom-Up Approach

    NASA Technical Reports Server (NTRS)

    Huemmrich, Fred

    2006-01-01

    This viewgraph presentation reviews the carbon atmospheric exchange with Arctic tundra. In the Arctic the ecosystem has been a net carbon sink. The project investigates the question of how might climate warming effect high latitude ecosystems and the Earth ecosystems and how to measure the changes.

  3. Resistance and resilience of tundra plant communities to disturbance by winter seismic vehicles

    SciTech Connect

    Felix, N.A.; Raynolds, M.K.; Jorgenson, J.C.; DuBois, K.E. )

    1992-02-01

    Effects of winter seismic exploration on arctic tundra were evaluated on the coastal plain of the Arctic National Wildlife Refuge, four to five growing seasons after disturbance. Plant cover, active layer depths, and track depression were measured at plots representing major tundra plant communities and different levels of initial disturbance. Results are compared with the initial effects reported earlier. Little resilience was seen in any vegetation type, with no clearly decreasing trends in community dissimilarity. Active layer depths remained greater on plots in all nonriparian vegetation types, and most plots still had visible trails. Decreases in plant cover persisted on most plots, although a few species showed recovery or increases in cover above predisturbance level. Moist sedge-shrub tundra and dryas terraces had the largest community dissimilarities initially, showing the least resistance to high levels of winter vehicle disturbance. Community dissimilarity continued to increase for five seasons in moist sedge-shrub tundra, with species composition changing to higher sedge cover and lower shrub cover. The resilience amplitude may have been exceeded on four plots which had significant track depression.

  4. Importance of Marine-Derived Nutrients Supplied by Planktivorous Seabirds to High Arctic Tundra Plant Communities.

    PubMed

    Zwolicki, Adrian; Zmudczyńska-Skarbek, Katarzyna; Richard, Pierre; Stempniewicz, Lech

    2016-01-01

    We studied the relative importance of several environmental factors for tundra plant communities in five locations across Svalbard (High Arctic) that differed in geographical location, oceanographic and climatic influence, and soil characteristics. The amount of marine-derived nitrogen in the soil supplied by seabirds was locally the most important of the studied environmental factors influencing the tundra plant community. We found a strong positive correlation between δ15N isotopic values and total N content in the soil, confirming the fundamental role of marine-derived matter to the generally nutrient-poor Arctic tundra ecosystem. We also recorded a strong correlation between the δ15N values of soil and of the tissues of vascular plants and mosses, but not of lichens. The relationship between soil δ15N values and vascular plant cover was linear. In the case of mosses, the percentage ground cover reached maximum around a soil δ 15N value of 8‰, as did plant community diversity. This soil δ15N value clearly separated the occurrence of plants with low nitrogen tolerance (e.g. Salix polaris) from those predominating on high N content soils (e.g. Cerastium arcticum, Poa alpina). Large colonies of planktivorous little auks have a great influence on Arctic tundra vegetation, either through enhancing plant abundance or in shaping plant community composition at a local scale.

  5. DIFFERENTIATION IN N15 UPTAKE AND THE ORGANIZATION OF AN ARCTIC TUNDRA PLANT COMMUNITY

    EPA Science Inventory

    We used N15 soil-labeling techniques to examine how the dominant species in a N-limited, tussock tundra plant community partitioned soil N, and how such partitioning may contribute to community organization. The five most abundant species were well differentiated with respect to...

  6. Importance of Marine-Derived Nutrients Supplied by Planktivorous Seabirds to High Arctic Tundra Plant Communities

    PubMed Central

    Zwolicki, Adrian; Zmudczyńska-Skarbek, Katarzyna; Richard, Pierre; Stempniewicz, Lech

    2016-01-01

    We studied the relative importance of several environmental factors for tundra plant communities in five locations across Svalbard (High Arctic) that differed in geographical location, oceanographic and climatic influence, and soil characteristics. The amount of marine-derived nitrogen in the soil supplied by seabirds was locally the most important of the studied environmental factors influencing the tundra plant community. We found a strong positive correlation between δ15N isotopic values and total N content in the soil, confirming the fundamental role of marine-derived matter to the generally nutrient-poor Arctic tundra ecosystem. We also recorded a strong correlation between the δ15N values of soil and of the tissues of vascular plants and mosses, but not of lichens. The relationship between soil δ15N values and vascular plant cover was linear. In the case of mosses, the percentage ground cover reached maximum around a soil δ 15N value of 8‰, as did plant community diversity. This soil δ15N value clearly separated the occurrence of plants with low nitrogen tolerance (e.g. Salix polaris) from those predominating on high N content soils (e.g. Cerastium arcticum, Poa alpina). Large colonies of planktivorous little auks have a great influence on Arctic tundra vegetation, either through enhancing plant abundance or in shaping plant community composition at a local scale. PMID:27149113

  7. Micrometeorological measurements of CH4 and CO2 exchange between the atmosphere and subarctic tundra

    NASA Technical Reports Server (NTRS)

    Fan, S. M.; Wofsy, S. C.; Bakwin, P. S.; Jacob, D. J.; Anderson, S. M.; Kebabian, P. L.; Mcmanus, J. B.; Kolb, C. E.; Fitzjarrald, D. R.

    1992-01-01

    Eddy correlation flux measurements and concentration profiles of total hydrocarbons (THC) and CO2 were combined to provide a comprehensive record of atmosphere-biosphere exchange for these gases over a 30-day period in July-August 1988 in the Yukon-Kuskokwin River Delta of Alaska. Over 90 percent of net ecosystem exchanges of THC were due to methane. Lakes and wet meadow tundra provided the major sources of methane. The average fluxes from lake, dry tundra, and wet tundra were 11 +/- 3, 29 +/- 3, and 57 +/- 6 mg CH4/sq m/d, respectively. The mean remission rate for the site was 25 mg/sq m/d. Maximum uptake of CO2 by the tundra was 1.4 gC/sq m/d between 1000 and 1500 hrs, and nocturnal respiration averaged 0.73 gC/sq m/d. Net uptake of CO2 was 0.30 gC/sq m/d for the 30 days of measurement; methane flux accounted for 6 percent of CO2 net uptake.

  8. Does earlier snowmelt lead to greater CO2 sequestration in two low Arctic tundra ecosystems?

    NASA Astrophysics Data System (ADS)

    Humphreys, Elyn R.; Lafleur, Peter M.

    2011-05-01

    Some studies have reported that spring warming and earlier snowmelt leads to increased CO2 sequestration in Arctic terrestrial ecosystems. We measured tundra-atmosphere CO2 exchange via eddy covariance at two low Arctic sites (mixed upland tundra and sedge fen) in central Canada over multiple snow-free periods to assess this hypothesis. Both sites were net sinks for atmospheric CO2 in all years (2004-2010), but with high interannual variability. Despite a large range in snowmelt date (30 days), we did not find a statistically significant correlation between seasonal accumulated net ecosystem production (NEP) and snowmelt for either site. Although many factors can influence seasonal total NEP, our analysis shows that annual variations in photosynthetic capacity, likely driven by changes in leaf area, is a dominating control at these Arctic sites. At the upland tundra site, protection of overwintering buds by a longer duration of deep snow appears to be linked to greater photosynthetic capacity and NEP. Whereas at the fen site, sedge growth benefits from earlier snowmelt resulting in a strong correlation with early season NEP and an increase in total study period NEP with increasing growing degree days. These results highlight the complexity of interannual variation in ecosystem CO2 exchange in Arctic tundra and suggest that snowmelt date alone cannot predict seasonal, or annual, NEP.

  9. Alpine forest-tundra ecotone response to temperature change,Sayan Mountains, Siberia

    NASA Technical Reports Server (NTRS)

    Ranson, K Jon; Kharuk, Vyetcheslav I.

    2007-01-01

    Models of climate change predict shifts of vegetation zones. Tree response to climate trends is most likely observable in the forest-tundra ecotone, where temperature mainly limits tree growth. There is evidence of vegetation change on the northern treeline However, observations on alpine tree line response are controversial. In this NEESPI related study we show that during the past three decades in the forest-tundra ecotone of the Sayan Mountains, Siberia, there was an increase in forest stand crown closure, regeneration propagation into the alpine tundra, and transformation of prostrate Siberian pine and fir into arboreal forms. We found that these changes occurred since the mid 1980s, and strongly correlates with positive temperature (and to a lesser extent, precipitation) trends. Improving climate for forest growth( i.e., warmer temperatures and increased precipitation) provides competitive advantages to Siberian pine in the alpine forest-tundra ecotone, as well as in areas typically dominated by larch, where it has been found to be forming a secondary canopy layer. Substitution of deciduous conifer, larch, for evergreen conifers, decreases albedo and provides positive feedback for temperature increase.

  10. Genome sequence of Pedobacter arcticus sp. nov., a sea ice bacterium isolated from tundra soil.

    PubMed

    Yin, Ye; Yue, Guidong; Gao, Qiang; Wang, Zhiyong; Peng, Fang; Fang, Chengxiang; Yang, Xu; Pan, Li

    2012-12-01

    Pedobacter arcticus sp. nov. was originally isolated from tundra soil collected from Ny-Ålesund, in the Arctic region of Norway. It is a Gram-negative bacterium which shows bleb-shaped appendages on the cell surface. Here, we report the draft annotated genome sequence of Pedobacter arcticus sp. nov., which belongs to the genus Pedobacter.

  11. Tundra ponds of the Yukon Delta, Alaska, and their macroinvertebrate communities.

    USGS Publications Warehouse

    Maciolek, J.A.

    1989-01-01

    The Yukon Delta, a low alluvial tundra in western Alaska, has more than 105 thaw-basin ponds within its 70000 km2 area. In 1984 and 1985, 68 ponds in three interior areas of the Delta were surveyed to determine limnological features, macroinvertebrate fauna, and trophic character. Ponds ranged up to 90 ha in area, 2 m in depth, and 17 m in elevation, and occurred in various temporal stages of growth and senescence. Among the 18 major invertebrate taxa collected, in order of decreasing frequency of occurrence, Trichoptera, Hemiptera, Diptera, Pelecypoda, Isopoda, Coleoptera, Gastropoda, and Oligochaeta were found in over 50% of the ponds. Trichoptera, the only taxon occurring in all ponds, was represented by 22 species of 6 families. The average Delta pond had 6.6 of the nine more common taxa. This measure of faunal richness was similar among study areas but was higher in low-tundra (sea level) ponds and in older ponds on raised tundra. In comparison, lentic invertebrate communities in five other areas of Alaskan and Canadian tundra had fewer taxa and also lower average richness based on occurrence of the same nine taxa.

  12. First insights into fern matK phylogeny.

    PubMed

    Kuo, Li-Yaung; Li, Fay-Wei; Chiou, Wen-Liang; Wang, Chun-Neng

    2011-06-01

    MatK, the only maturase gene in the land plant plastid genome, is a very popular phylogenetic marker that has been extensively applied in reconstructing angiosperm phylogeny. However, the use of matK in fern phylogeny is largely unknown, due to difficulties with amplification: ferns have lost the flanking trnK exons, typically the region used for designing stable priming sites. We developed primers that are either universal or lineage-specific that successfully amplify matK across all fern families. To evaluate whether matK is as powerful a phylogenetic marker in ferns as in angiosperms, we compared its sequence characteristics and phylogenetic performance to those of rbcL and atpA. Among these three genes, matK has the highest variability and substitution evenness, yet shows the least homoplasy. Most importantly, applying matK in fern phylogenetics better resolved relationships among families, especially within eupolypods I and II. Here we demonstrate the power of matK for fern phylogenetic reconstruction, as well as provide primers and extensive sequence data that will greatly facilitate future evolutionary studies of ferns.

  13. Potential for bioremediating using constructed mixed microbial mats

    SciTech Connect

    Goodroad, L.; Bender, J.; Phillips, P.; Gould, J.; Saha, G.; Rodriguez-Eaton, S.; Vatcharapijarn, Y.; Lee, R.; Word, J.

    1994-12-31

    Microbial mats are natural heterotrophic and autotrophic communities dominated by cyanobacteria (blue-green algae). They are self-organized laminated structures annealed tightly together by slimy secretions from various Microbial components. The surface slime of the mats effectively immobilizes the ecosystem to a variety of substrates, thereby stabilizing the most efficient internal microbial structure. Constructed microbial mats can be generated rapidly by enriching a water surface with ensiled grass clippings. These constructed mats are durable, tolerant to a variety of toxins and resilient under changing environmental conditions. The mats can he designed for specific tasks by inoculating the cyanobacteria/silage with selected microorganisms. Mats constructed with specific microbial components have been developed for various bioremediation applications: removal of metals, organic degradation, treatment of mixed contaminants, biological treatment ponds, and soil remediation. Constructed mats offer a broad range of mechanisms related to the sequestration of heavy metals, the biodegradation of recalcitrant organic compounds, and the remediation of mixed organic/inorganic contaminants such as TCE and carbofuran with heavy metals.

  14. The MAT locus genes play different roles in sexual reproduction and pathogenesis in Fusarium graminearum.

    PubMed

    Zheng, Qian; Hou, Rui; Juanyu; Zhang; Ma, Jiwen; Wu, Zhongshou; Wang, Guanghui; Wang, Chenfang; Xu, Jin-Rong

    2013-01-01

    Sexual reproduction plays a critical role in the infection cycle of Fusarium graminearum because ascospores are the primary inoculum. As a homothallic ascomycete, F. graminearum contains both the MAT1-1 and MAT1-2-1 loci in the genome. To better understand their functions and regulations in sexual reproduction and pathogenesis, in this study we assayed the expression, interactions, and mutant phenotypes of individual MAT locus genes. Whereas the expression of MAT1-1-1 and MAT12-1 rapidly increased after perithecial induction and began to decline after 1 day post-perithecial induction (dpi), the expression of MAT1-1-2 and MAT1-1-3 peaked at 4 dpi. MAT1-1-2 and MAT1-1-3 had a similar expression profile and likely are controlled by a bidirectional promoter. Although none of the MAT locus genes were essential for perithecium formation, all of them were required for ascosporogenesis in self-crosses. In outcrosses, the mat11-1-2 and mat11-1-3 mutants were fertile but the mat1-1-1 and mat1-2-1 mutants displayed male- and female-specific defects, respectively. The mat1-2-1 mutant was reduced in FgSO expression and hyphal fusion. Mat1-1-2 interacted with all other MAT locus transcription factors, suggesting that they may form a protein complex during sexual reproduction. Mat1-1-1 also interacted with FgMcm1, which may play a role in controlling cell identity and sexual development. Interestingly, the mat1-1-1 and mat1-2-1 mutants were reduced in virulence in corn stalk rot assays although none of the MAT locus genes was important for wheat infection. The MAT1-1-1 and MAT1-2-1 genes may play a host-specific role in colonization of corn stalks. PMID:23826182

  15. The MAT Locus Genes Play Different Roles in Sexual Reproduction and Pathogenesis in Fusarium graminearum

    PubMed Central

    Juanyu; Zhang; Ma, Jiwen; Wu, Zhongshou; Wang, Guanghui; Wang, Chenfang; Xu, Jin-Rong

    2013-01-01

    Sexual reproduction plays a critical role in the infection cycle of Fusarium graminearum because ascospores are the primary inoculum. As a homothallic ascomycete, F. graminearum contains both the MAT1-1 and MAT1-2-1 loci in the genome. To better understand their functions and regulations in sexual reproduction and pathogenesis, in this study we assayed the expression, interactions, and mutant phenotypes of individual MAT locus genes. Whereas the expression of MAT1-1-1 and MAT12-1 rapidly increased after perithecial induction and began to decline after 1 day post-perithecial induction (dpi), the expression of MAT1-1-2 and MAT1-1-3 peaked at 4 dpi. MAT1-1-2 and MAT1-1-3 had a similar expression profile and likely are controlled by a bidirectional promoter. Although none of the MAT locus genes were essential for perithecium formation, all of them were required for ascosporogenesis in self-crosses. In outcrosses, the mat11-1-2 and mat11-1-3 mutants were fertile but the mat1-1-1 and mat1-2-1 mutants displayed male- and female-specific defects, respectively. The mat1-2-1 mutant was reduced in FgSO expression and hyphal fusion. Mat1-1-2 interacted with all other MAT locus transcription factors, suggesting that they may form a protein complex during sexual reproduction. Mat1-1-1 also interacted with FgMcm1, which may play a role in controlling cell identity and sexual development. Interestingly, the mat1-1-1 and mat1-2-1 mutants were reduced in virulence in corn stalk rot assays although none of the MAT locus genes was important for wheat infection. The MAT1-1-1 and MAT1-2-1 genes may play a host-specific role in colonization of corn stalks. PMID:23826182

  16. The MAT locus genes play different roles in sexual reproduction and pathogenesis in Fusarium graminearum.

    PubMed

    Zheng, Qian; Hou, Rui; Juanyu; Zhang; Ma, Jiwen; Wu, Zhongshou; Wang, Guanghui; Wang, Chenfang; Xu, Jin-Rong

    2013-01-01

    Sexual reproduction plays a critical role in the infection cycle of Fusarium graminearum because ascospores are the primary inoculum. As a homothallic ascomycete, F. graminearum contains both the MAT1-1 and MAT1-2-1 loci in the genome. To better understand their functions and regulations in sexual reproduction and pathogenesis, in this study we assayed the expression, interactions, and mutant phenotypes of individual MAT locus genes. Whereas the expression of MAT1-1-1 and MAT12-1 rapidly increased after perithecial induction and began to decline after 1 day post-perithecial induction (dpi), the expression of MAT1-1-2 and MAT1-1-3 peaked at 4 dpi. MAT1-1-2 and MAT1-1-3 had a similar expression profile and likely are controlled by a bidirectional promoter. Although none of the MAT locus genes were essential for perithecium formation, all of them were required for ascosporogenesis in self-crosses. In outcrosses, the mat11-1-2 and mat11-1-3 mutants were fertile but the mat1-1-1 and mat1-2-1 mutants displayed male- and female-specific defects, respectively. The mat1-2-1 mutant was reduced in FgSO expression and hyphal fusion. Mat1-1-2 interacted with all other MAT locus transcription factors, suggesting that they may form a protein complex during sexual reproduction. Mat1-1-1 also interacted with FgMcm1, which may play a role in controlling cell identity and sexual development. Interestingly, the mat1-1-1 and mat1-2-1 mutants were reduced in virulence in corn stalk rot assays although none of the MAT locus genes was important for wheat infection. The MAT1-1-1 and MAT1-2-1 genes may play a host-specific role in colonization of corn stalks.

  17. Using Intact Iron Microbial Mats to Gain Insights Into Mat Ecology and Geochemical Niche at the Microbial Scale

    NASA Astrophysics Data System (ADS)

    Glazer, B. T.; Chan, C. S. Y.; Mcallister, S.; Leavitt, A.; Emerson, D.

    2015-12-01

    Microbial mats are formed by microorganisms working in coordinated symbiosis, often benefitting the community by controlling the local geochemical or physical environment. Thus, the ecology of the mat depends on the individual roles of microbes organized into niches within a larger architecture. Chemolithotrophic Fe-oxidizing bacteria (FeOB) form distinctive Fe oxyhydroxide biominerals which constitute the building blocks of the mat. However, the majority of our progress has been in understanding the overall community structure. Understanding the physical mat structure on the microbial scale is important to unraveling FeOB evolution, the biogeochemistry and ecology of Fe-rich habitats, and ultimately interpreting FeOB biosignatures in the rock record. Mats in freshwater and marine environments contain strikingly similar biomineral morphologies, yet they are formed by phylogenetically distinct microorganisms. This suggests that the overall architecture and underlying genetics of freshwater and marine mats has evolved to serve particular roles specific to Fe oxidation. Thus, we conducted a comparative study of Fe seep freshwater mats and marine hydrothermal mats. We have developed a new approach to sampling Fe mats in order to preserve the delicate structure for analysis by confocal and scanning electron microscopy. Our analyses of these intact mats show that freshwater and marine mats are similarly initiated by a single type of structure-former. These ecosystem engineers form either a hollow sheath or a twisted stalk biomineral during mat formation, with a highly directional structure. These microbes appear to be the vanguard organisms that anchor the community within oxygen/Fe(II) gradients, further allowing for community succession in the mat interior as evidenced by other mineralized morphologies. Patterns in biomineral thickness and directionality were indicative of redox gradients and temporal changes in the geochemical environment. These observations show that

  18. Manganese Influences Carbonate Precipitation in a Laminated Microbial Mat

    NASA Astrophysics Data System (ADS)

    Krusor, M.; Grim, S. L.; Wilmeth, D.; Johnson, H.; Berelson, W.; Stevenson, B. S.; Stamps, B. W.; Corsetti, F. A.; Spear, J. R.

    2015-12-01

    Investigating mineralization within modern microbial mats informs our interpretation of ancient microbialites and the mineralization process. Microbial mats in Little Hot Creek (LHC), California contain 4 distinct layers with different microbiota. Each layer of the mat is supersaturated with regard to calcium carbonate (CaCO3), which increases with depth. Total organic carbon decreases with depth through the mat. We used 13C-labeled bicarbonate incubations of each mat layer to calculate growth rates of organic carbon and CaCO3 within the mat. Incubations were also amended with Mn or Mg to test their effect on rates of CaCO3 and organic carbon formation. The Mn-amended top layer increased CaCO3 precipitation and organic carbon growth. Mn increased organic carbon production in the lowest layer to a lesser extent, but not growth of CaCO3. Mn addition had no effect on growth rates in the two intervening layers. Mg amendment stimulated only organic carbon formation in the top layer, with little to no effect on the lower layers or overall CaCO3 formation. We attribute the elevated CaCO3 precipitation noted after Mn addition to increased oxygenic photosynthetic activity. Oxygenic photosynthesis requires Mn as an enzyme cofactor and promotes carbonate precipitation. We propose that the phototrophic community was responsible for most of the CaCO3 precipitation in the upper layer. Phototrophs gradually moved upwards for optimal access to sunlight, and as the mat grew, "tenant" microorganisms inhabited the lower carbonate layers while the "builders" remained on top. The relatively constant percentages of inorganic carbon below the top layer combined with observed minimal CaCO3 precipitation under laboratory conditions suggest that additional research into potential metabolisms that impact carbonate formation would be informative. These results improve our understanding of the linkages between microbial metabolisms, carbonate precipitation in microbial mats, and the potential

  19. Will Arctic ground squirrels impede or accelerate climate-induced vegetation changes to the Arctic tundra?

    NASA Astrophysics Data System (ADS)

    Dalton, J.; Flower, C. E.; Brown, J.; Gonzalez-Meler, M. A.; Whelan, C.

    2014-12-01

    Considerable attention has been given to the climate feedbacks associated with predicted vegetation shifts in the Arctic tundra in response to global environmental change. However, little is known regarding the extent to which consumers can facilitate or respond to shrub expansion. Arctic ground squirrels, the largest and most northern ground squirrel, are abundant and widespread throughout the North American tundra. Their broad diet of seeds, flowers, herbage, bird's eggs and meat speaks to the need to breed, feed, and fatten in a span of some 12-16 weeks that separate their 8-9 month bouts of hibernation with the potential consequence to impact ecosystem dynamics. Therefore Arctic ground squirrels are a good candidate to evaluate whether consumers are mere responders (bottom-up effects) or drivers (top-down) of the observed and predicted vegetation changes. As a start towards this question, we measured the foraging intensity (giving-up densities) of Arctic ground squirrels in experimental food patches within which the squirrels experience diminishing returns as they seek the raisins and peanuts that we provided at the Toolik Lake field station in northern Alaska. If the squirrels show their highest feeding intensity in the shrubs, they may impede vegetation shifts by slowing the establishment and expansion of shrubs in the tundra. Conversely, if they show their lowest feeding intensity within shrub dominated areas, they may accelerate vegetation shifts. We found neither. Feeding intensity varied most among transects and times of day, and least along a tundra-to-shrub vegetation gradient. This suggests that the impacts of squirrels will be heterogeneous - in places responders and in others drivers. We should not be surprised then to see patches of accelerated and impeded vegetation changes in the tundra ecosystem. Some of these patterns may be predictable from the foraging behavior of Arctic ground squirrels.

  20. Greater shrub dominance alters breeding habitat and food resources for migratory songbirds in Alaskan arctic tundra.

    PubMed

    Boelman, Natalie T; Gough, Laura; Wingfield, John; Goetz, Scott; Asmus, Ashley; Chmura, Helen E; Krause, Jesse S; Perez, Jonathan H; Sweet, Shannan K; Guay, Kevin C

    2015-04-01

    Climate warming is affecting the Arctic in multiple ways, including via increased dominance of deciduous shrubs. Although many studies have focused on how this vegetation shift is altering nutrient cycling and energy balance, few have explicitly considered effects on tundra fauna, such as the millions of migratory songbirds that breed in northern regions every year. To understand how increasing deciduous shrub dominance may alter breeding songbird habitat, we quantified vegetation and arthropod community characteristics in both graminoid and shrub dominated tundra. We combined measurements of preferred nest site characteristics for Lapland longspurs (Calcarius lapponicus) and Gambel's White-crowned sparrows (Zonotrichia leucophrys gambelii) with modeled predictions for the distribution of plant community types in the Alaskan arctic foothills region for the year 2050. Lapland longspur nests were found in sedge-dominated tussock tundra where shrub height does not exceed 20 cm, whereas White-crowned sparrows nested only under shrubs between 20 cm and 1 m in height, with no preference for shrub species. Shrub canopies had higher canopy-dwelling arthropod availability (i.e. small flies and spiders) but lower ground-dwelling arthropod availability (i.e. large spiders and beetles). Since flies are the birds' preferred prey, increasing shrubs may result in a net enhancement in preferred prey availability. Acknowledging the coarse resolution of existing tundra vegetation models, we predict that by 2050 there will be a northward shift in current White-crowned sparrow habitat range and a 20-60% increase in their preferred habitat extent, while Lapland longspur habitat extent will be equivalently reduced. Our findings can be used to make first approximations of future habitat change for species with similar nesting requirements. However, we contend that as exemplified by this study's findings, existing tundra modeling tools cannot yet simulate the fine-scale habitat

  1. Greater deciduous shrub abundance extends tundra peak season and increases modeled net CO2 uptake.

    PubMed

    Sweet, Shannan K; Griffin, Kevin L; Steltzer, Heidi; Gough, Laura; Boelman, Natalie T

    2015-06-01

    Satellite studies of the terrestrial Arctic report increased summer greening and longer overall growing and peak seasons since the 1980s, which increases productivity and the period of carbon uptake. These trends are attributed to increasing air temperatures and reduced snow cover duration in spring and fall. Concurrently, deciduous shrubs are becoming increasingly abundant in tundra landscapes, which may also impact canopy phenology and productivity. Our aim was to determine the influence of greater deciduous shrub abundance on tundra canopy phenology and subsequent impacts on net ecosystem carbon exchange (NEE) during the growing and peak seasons in the arctic foothills region of Alaska. We compared deciduous shrub-dominated and evergreen/graminoid-dominated community-level canopy phenology throughout the growing season using the normalized difference vegetation index (NDVI). We used a tundra plant-community-specific leaf area index (LAI) model to estimate LAI throughout the green season and a tundra-specific NEE model to estimate the impact of greater deciduous shrub abundance and associated shifts in both leaf area and canopy phenology on tundra carbon flux. We found that deciduous shrub canopies reached the onset of peak greenness 13 days earlier and the onset of senescence 3 days earlier compared to evergreen/graminoid canopies, resulting in a 10-day extension of the peak season. The combined effect of the longer peak season and greater leaf area of deciduous shrub canopies almost tripled the modeled net carbon uptake of deciduous shrub communities compared to evergreen/graminoid communities, while the longer peak season alone resulted in 84% greater carbon uptake in deciduous shrub communities. These results suggest that greater deciduous shrub abundance increases carbon uptake not only due to greater leaf area, but also due to an extension of the period of peak greenness, which extends the period of maximum carbon uptake.

  2. Greater shrub dominance alters breeding habitat and food resources for migratory songbirds in Alaskan arctic tundra.

    PubMed

    Boelman, Natalie T; Gough, Laura; Wingfield, John; Goetz, Scott; Asmus, Ashley; Chmura, Helen E; Krause, Jesse S; Perez, Jonathan H; Sweet, Shannan K; Guay, Kevin C

    2015-04-01

    Climate warming is affecting the Arctic in multiple ways, including via increased dominance of deciduous shrubs. Although many studies have focused on how this vegetation shift is altering nutrient cycling and energy balance, few have explicitly considered effects on tundra fauna, such as the millions of migratory songbirds that breed in northern regions every year. To understand how increasing deciduous shrub dominance may alter breeding songbird habitat, we quantified vegetation and arthropod community characteristics in both graminoid and shrub dominated tundra. We combined measurements of preferred nest site characteristics for Lapland longspurs (Calcarius lapponicus) and Gambel's White-crowned sparrows (Zonotrichia leucophrys gambelii) with modeled predictions for the distribution of plant community types in the Alaskan arctic foothills region for the year 2050. Lapland longspur nests were found in sedge-dominated tussock tundra where shrub height does not exceed 20 cm, whereas White-crowned sparrows nested only under shrubs between 20 cm and 1 m in height, with no preference for shrub species. Shrub canopies had higher canopy-dwelling arthropod availability (i.e. small flies and spiders) but lower ground-dwelling arthropod availability (i.e. large spiders and beetles). Since flies are the birds' preferred prey, increasing shrubs may result in a net enhancement in preferred prey availability. Acknowledging the coarse resolution of existing tundra vegetation models, we predict that by 2050 there will be a northward shift in current White-crowned sparrow habitat range and a 20-60% increase in their preferred habitat extent, while Lapland longspur habitat extent will be equivalently reduced. Our findings can be used to make first approximations of future habitat change for species with similar nesting requirements. However, we contend that as exemplified by this study's findings, existing tundra modeling tools cannot yet simulate the fine-scale habitat

  3. Human impacts on the tundra-taiga zone dynamics: the case of the Russian lesotundra.

    PubMed

    Vlassova, T K

    2002-08-01

    The tundra-taiga zone is considered not only as a natural ecotone, but as a unique fringe zone with socioeconomic peculiarities. This holistic approach enables us to analyze several significant types of human impacts (industrial impacts and those associated with renewable resources development, including traditional reindeer herding and human settlements) and their role in the displacement of the lesotundra zone. In Russia, there is much evidence of deforestation and ecosystem degradation in different regions of the lesotundra zone and the northern taiga which borders the lesotundra zone. One indicator of this is that in the Archangelsk region and the Komi Republic, the observed current southern border of the lesotundra zone lies 40-100 km to the south of the southern boundary of the Protection Belt of Pretundra Forests, established in 1959. Human impacts also displace the northern boundary of the lesotundra zone (the boundary with the tundra zone) to the south. As a result, according to published estimations, the total area of human-made tundra and lesotundra stretching from the Kola Peninsula to Chukotka, is c. 470-500,000 km2. The increases in man-made tundra lead to negative consequences for the sociocultural sustainability of the lesotundra zone, a decrease in the quality of life (notably for permanent residents and native people and increases in mortality and depopulation. It cannot be predicted with any certainty that climate warming in the tundra-taiga zone will lead to a northward movement of the boreal forest treeline. We need also to consider the human impacts discussed in this article, which may actually lead to a southward movement of the lesotundra zone.

  4. Surface energy exchanges along a tundra-forest transition and feedbacks to climate

    USGS Publications Warehouse

    Beringer, J.; Chapin, F. S.; Thompson, Catharine Copass; McGuire, A.D.

    2005-01-01

    Surface energy exchanges were measured in a sequence of five sites representing the major vegetation types in the transition from arctic tundra to forest. This is the major transition in vegetation structure in northern high latitudes. We examined the influence of vegetation structure on the rates of sensible heating and evapotranspiration to assess the potential feedbacks to climate if high-latitude warming were to change the distribution of these vegetation types. Measurements were made at Council on the Seward Peninsula, Alaska, at representative tundra, low shrub, tall shrub, woodland (treeline), and boreal forest sites. Structural differences across the transition from tundra to forest included an increase in the leaf area index (LAI) from 0.52 to 2.76, an increase in canopy height from 0.1 to 6.1 m, and a general increase in canopy complexity. These changes in vegetation structure resulted in a decrease in albedo from 0.19 to 0.10 as well as changes to the partitioning of energy at the surface. Bulk surface resistance to water vapor flux remained virtually constant across sites, apparently because the combined soil and moss evaporation decreased while transpiration increased along the transect from tundra to forest. In general, sites became relatively warmer and drier along the transect with the convective fluxes being increasingly dominated by sensible heating, as evident by an increasing Bowen ratio from 0.94 to 1.22. The difference in growing season average daily sensible heating between tundra and forest was 21 W m-2. Fluxes changed non-linearly along the transition, with both shrubs and trees substantially enhancing heat transfer to the atmosphere. These changes in vegetation structure that increase sensible heating could feed back to enhance warming at local to regional scales. The magnitude of these vegetation effects on potential high-latitude warming is two to three times greater than suggested by previous modeling studies. ?? 2005 Elsevier B.V. All

  5. Atmospheric loading of nitrogen to alpine tundra in the Colorado front range

    SciTech Connect

    Sievering, H.; Burton, D. ); Caine, N. )

    1992-12-01

    Dry deposition of atmospheric nitrogen gas and aerosol species was estimated for the alpine tundra of Niwot Ridge, 3525 m elevation in the Colorado Rockies. Comparisons, for the 4 month long growing season and the remaining 8 months of the year, were made with wet deposition and throughfall incident measurements taken during 1987-1989. Dry deposition of N to the tundra is estimated to be equal to or slightly greater than its wet deposition. During the mid-May to mid-September growing season, atmospheric N deposition is > 1.0 mg N m[sup -2] d[sup -1] directly from the atmosphere with a similar amount contributed indirectly as NO[sub 3]-N in snowmelt water as a result of dry and wet deposition to the winter snowpack. The total N deposition to Niwot Ridge tundra during the growing season of about 2 mg N m[sup -2] d[sup -1] may be compared to an earlier measurement of dry plus fog deposition (1-2 mg N m[sup -2] d[sup -1]) to a subalpine coniferous canopy at Niwot Ridge. Nitrate yields from two small drainage basins at Niwot Ridge match these fluxes. Seven years of record from an unvegetated glacial cirque suggest an average yield from the alpine of 0.7 mg N m[sup -2] d[sup -1]. The equivalent estimate for a basin with 50% tundra vegetation cover is 0.4 mg N m[sup -2] d[sup -1]. The contrast in these two estimates of daily averaged N yields for the entire year suggests the retention of nearly 1 mg N m[sup -2] d[sup -1] during the growing season in the more vegetated basin. The sink for this N could be the tundra soil and vegetation where biological activity is often limited by the availability of N. 26 refs., 3 tabs.

  6. Critical review of mercury fates and contamination in the Arctic tundra ecosystem.

    PubMed

    Poissant, Laurier; Zhang, Hong H; Canário, João; Constant, Philippe

    2008-08-01

    Mercury (Hg) contamination in tundra region has raised substantial concerns, especially since the first report of atmospheric mercury depletion events (AMDEs) in the Polar Regions. During the past decade, steady progress has been made in the research of Hg cycling in the Polar Regions. This has generated a unique opportunity to survey the whole Arctic in respect to Hg issue and to find out new discoveries. However, there are still considerable knowledge gaps and debates on the fate of Hg in the Arctic and Antarctica, especially regarding the importance and significance of AMDEs vs. net Hg loadings and other processes that burden Hg in the Arctic. Some studies argued that climate warming since the last century has exerted profound effects on the limnology of High Arctic lakes, including substantial increases in autochthonous primary productivity which increased in sedimentary Hg, whereas some others pointed out the importance of the formation and postdeposition crystallographic history of the snow and ice crystals in determining the fate and concentration of mercury in the cryosphere in addition to AMDEs. Is mercury re-emitted back to the atmosphere after AMDEs? Is Hg methylation effective in the Arctic tundra? Where the sources of MeHg are? What is its fate? Is this stimulated by human made? This paper presents a critical review about the fate of Hg in the Arctic tundra, such as pathways and process of Hg delivery into the Arctic ecosystem; Hg concentrations in freshwater and marine ecosystems; Hg concentrations in terrestrial biota; trophic transfer of Hg and bioaccumulation of Hg through food chain. This critical review of mercury fates and contamination in the Arctic tundra ecosystem is assessing the impacts and potential risks of Hg contamination on the health of Arctic people and the global northern environment by highlighting and "perspectiving" the various mercury processes and concentrations found in the Arctic tundra.

  7. Water flow and solute transport in floating fen root mats

    NASA Astrophysics Data System (ADS)

    Stofberg, Sija F.; EATM van der Zee, Sjoerd

    2015-04-01

    Floating fens are valuable wetlands, found in North-Western Europe, that are formed by floating root mats when old turf ponds are colonized by plants. These terrestrialization ecosystems are known for their biodiversity and the presence of rare plant species, and the root mats reveal different vegetation zones at a small scale. The vegetation zones are a result of strong gradients in abiotic conditions, including groundwater dynamics, nutrients and pH. To prevent irreversible drought effects such as land subsidence and mineralization of peat, water management involves import of water from elsewhere to maintain constant surface water levels. Imported water may have elevated levels of salinity during dry summers, and salt exposure may threaten the vegetation. To assess the risk of exposure of the rare plant species to salinity, the hydrology of such root mats must be understood. Physical properties of root mats have scarcely been investigated. We have measured soil characteristics, hydraulic conductivity, vertical root mat movement and groundwater dynamics in a floating root mat in the nature reserve Nieuwkoopse Plassen, in the Netherlands. The root mat mostly consists of roots and organic material, in which the soil has a high saturated water content, and strongly varies in its stage of decomposition. We have found a distinct negative correlation between degree of decomposition and hydraulic conductivity, similar to observations for bogs in the literature. Our results show that the relatively young, thin edge of the root mat that colonizes the surface water has a high hydraulic conductivity and floats in the surface water, resulting in very small groundwater fluctuations within the root mat. The older part of the root mat, that is connected to the deeper peat layers is hydrologically more isolated and the material has a lower conductivity. Here, the groundwater fluctuates strongly with atmospheric forcing. The zones of hydraulic properties and vegetation, appear to

  8. Electrospun graphene-ZnO nanofiber mats for photocatalysis applications

    NASA Astrophysics Data System (ADS)

    An, Seongpil; Joshi, Bhavana N.; Lee, Min Wook; Kim, Na Young; Yoon, Sam S.

    2014-03-01

    Graphene-decorated zinc oxide (G-ZnO) nanofibers were fabricated, for the first time, by electrospinning. The effect of graphene concentration on the properties of G-ZnO mats were investigated by scanning electron microscopy, X-ray diffraction, Raman spectroscopy, and thermo gravimetric analysis. The G-ZnO mats decorated with 0.5 wt.% of graphene showed excellent photocatalytic activity through degradation of methylene blue under UV irradiation. The highest photocatalytic activity (80% degradation) was observed for 0.5 wt.% G-ZnO mats annealed at 400 °C after 4 h of UV irradiation.

  9. Protocyanobacteria: Oxygenic and Anoxygenic photosynthesis in mat-forming bacteria

    NASA Technical Reports Server (NTRS)

    Cohen, Y.

    1985-01-01

    The oldest record of life is preserved in prePhanerozoic stromatolites dated 3500 million years old and is most likely of filamentous mat-forming cyanobacteria. The sedimentary records of cyanobacterial mats in stromatolites are the most abundant record of life throughout the prePhanerozoic. Stromatolites persisted into the Phanerozoic Eon, yet they become much less pronounced relative to earlier ones. The abundance and persistence of cyanobacterial mats throughout most of geological time point to the evolutionary success of these kinds of microbial communities and their possible role in the evolution of the earth and atmosphere.

  10. Formation and fate of fermentation products in hot spring cyanobacterial mats

    SciTech Connect

    Anderson, K.L.; Tayne, T.A.; Ward, D.M.

    1987-10-01

    The fate of representative fermentation products (acetate, propionate, butyrate, lactate, and ethanol) in hot spring cyanobacterial mats was investigated. The major fate during incubations in the light was photoassimilation by filamentous bacteria resembling Chloroflexus aurantiacus. Some metabolism of all compounds occurred under dark aerobic conditions. Under dark anaerobic conditions, only lactate was oxidized extensively to carbon dioxide. Extended preincubation under dark anaerobic conditions did not enhance anaerobic catabolism of acetate, propionate, or ethanol. Acetogenesis of butyrate was suggested by the hydrogen sensitivity of butyrate conversion to acetate and by the enrichment of butyrate-degrading acetogenic bacteria. Accumulation of fermentation products which were not catabolized under dark anaerobic conditions revealed their importance. Acetate and propionate were the major fermentation products which accumulated in samples collected at temperatures ranging from 50 to 70/sup 0/C. Other organic acids and alcohols accumulated to a much lesser extent. Fermentation occurred mainly in the top 4 mm of the mat. Exposure to light decreased the accumulation of acetate and presumably of other fermentation products. The importance of interspecies hydrogen transfer was investigated by comparing fermentation product accumulation at a 65/sup 0/C site, with naturally high hydrogen levels, and a 55/sup 0/C site, where active methanogenesis prevented significant hydrogen accumulation. There was a greater relative accumulation of reduced products, notably ethanol, in the 65/sup 2/C mat.

  11. Eukaryotic microbial diversity of phototrophic microbial mats in two Icelandic geothermalhot springs.

    PubMed

    Aguilera, Angeles; Souza-Egipsy, Virginia; González-Toril, Elena; Rendueles, Olaya; Amils, Ricardo

    2010-03-01

    The composition of the eukaryotic community and the three-dimensional structure of diverse phototrophic microbial mats from two hot springs in Iceland (Seltun and Hveradalir geothermal areas) were explored by comparing eukaryotic assemblages from microbial mats. Samples were collected in July 2007 from 15 sampling stations along thermal and pH gradients following both hot springs. Physicochemical data revealed high variability in terms of pH (ranging from 2.8 to 7), with high concentrations of heavy metals, including up to 20 g Fe/l, 80 mg Zn/l, 117 mg Cu/l, and 39 mg Ni/l at the most acidic sampling points. Phylogenetic analysis of 18S rDNA genes revealed a diversity of sequences related to several taxa, including members of the Bacillariophyta, Chlorophyta, Rhodophyta, and Euglenophyta phyla as well as ciliates, amoebae, and stramenopiles. The closest relatives to some of the sequences detected came from acidophilic organisms, even when the samples were collected at circumneutral water locations. Electron microscopy showed that most of the microecosystems analyzed were organized as phototrophic microbial mats in which filamentous cyanobacteria usually appeared as a major component. Deposits of amorphous minerals rich in silica, iron, and aluminium around the filaments were frequently detected.

  12. Tracking the Effect of Algal Mats on Coral Bleaching Using Remote Sensing

    NASA Astrophysics Data System (ADS)

    El-Askary, H. M.; Johnson, S. H.; Idris, N.; Qurban, M. A. B.

    2014-12-01

    Benthic habitats rely on relatively stable environmental conditions for survival. The introduction of algal mats into an ecosystem can have a notable effect on the livelihood of organisms such as coral reefs by causing changes in the biogeochemistry of the surrounding water. Increasing levels of acidity and new competition for sunlight caused by congregations of cyanobacteria essentially starve coral reefs of natural resources. These changes are particularly prevalent in waters near quickly developing population centers, such as the ecologically diverse Arabian Gulf. While ground-truthing studies to determine the extensiveness of coral death proves useful on a microcosmic level, new ventures in remote sensing research allow scientists to utilize satellite data to track these changes on a broader scale. Satellite images acquired from Landsat 5, 1987, Landsat 7, 2000, and Landsat 8, 2013 along with higher resolution IKONOS data are digitally analyzed in order to create spectral libraries for relevant benthic types, which in turn can be used to perform supervised classifications and change detection analyses over a larger area. The supervised classifications performed over the three scenes show five significant marine-related classes, namely coral, mangroves, macro-algae, and seagrass, in different degrees of abundance, yet here we focus only on the algal mats impact on corals bleaching. The change detection analysis is introduced to study see the degree of algal mats impact on coral bleaching over the course of time with possible connection to the local meteorology and current climate scenarios.

  13. Fabrication and Formation Mechanism of Ag Nanoplate-Decorated Nanofiber Mats and Their Application in SERS.

    PubMed

    Jia, Peng; Chang, Jiao; Wang, Jianqiang; Zhang, Pan; Cao, Bing; Geng, Yuting; Wang, Xiuxing; Pan, Kai

    2016-01-01

    We report a new simple method to fabricate a highly active SERS substrate consisting of poly-m-phenylenediamine/polyacrylonitrile (PmPD/PAN) decorated with Ag nanoplates. The formation mechanism of Ag nanoplates is investigated. The synthetic process of the Ag nanoplate-decorated PmPD/PAN (Ag nanoplates@PmPD/PAN) nanofiber mats consists of the assembly of Ag nanoparticles on the surface of PmPD/PAN nanofibers as crystal nuclei followed by in situ growth of Ag nanoparticles exclusively into nanoplates. Both the reducibility of the polymer and the concentration of AgNO3 are found to play important roles in the formation and the density of Ag nanoplates. The optimized Ag nanoplates@PmPD/PAN nanofiber mats exhibit excellent activity and reproducibility in surface-enhanced Raman scattering (SERS) detection of 4-mercaptobenzoic acid (4-MBA) with a detection limit of 10(-10)  m, making the Ag nanoplates@PmPD/PAN nanofiber mats a promising substrate for SERS detection of chemical molecules. In addition, this work also provides a design and fabrication process for a 3D SERS substrate made of a reducible polymer with noble metals.

  14. Electrospinning strategies of drug-incorporated nanofibrous mats for wound recovery.

    PubMed

    Choi, Ji Suk; Kim, Hye Sung; Yoo, Hyuk Sang

    2015-04-01

    Electrospun nanofibrous mats have recently been employed as drug reservoirs for their unique features, such as high surface-to-volume ratios and easy fabrication process. We describe herein various methods of fabricating drug- and gene-encapsulated nanofibrous meshes, which can be prepared by electrospinning. The electrospinning process of nanofibrous mats is affected by many parameters, including viscosity and ejection speeds of the polymeric solutions and the electrical potential applied to the system. Both single- and dual-nozzle systems are widely employed in the preparation of electrospun nanofibers encapsulating drugs and genes, which are usually incorporated into the electrospun mats either by physical mixing with polymeric solutions before electrospinning or by physical incorporation after electrospinning. Various strategies have been tailored to maintain the bioactivity of proteins for tissue regeneration before and after electrospinning. Nucleic acids, such as DNA and siRNA, are also incorporated into nanofibrous meshes to enhance tissue regeneration by expressing transgenes or silencing domestic genes in specific tissues. Drug- or gene-incorporated nanofibrous meshes can greatly increase tissue regeneration rates and reduce scar formation in normal and diabetic wounds. Hybrid nanofibers, with multiple cell layers or hydrogels, have also been used to improve wound healing efficiency by increasing cell infiltration.

  15. Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile.

    PubMed

    Fernandez, Ana B; Rasuk, Maria C; Visscher, Pieter T; Contreras, Manuel; Novoa, Fernando; Poire, Daniel G; Patterson, Molly M; Ventosa, Antonio; Farias, Maria E

    2016-01-01

    We combined nucleic acid-based molecular methods, biogeochemical measurements, and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity, and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions, and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea) in bulk samples, and in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity) in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB, and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum, and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems) than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity. PMID:27597845

  16. Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile

    PubMed Central

    Fernandez, Ana B.; Rasuk, Maria C.; Visscher, Pieter T.; Contreras, Manuel; Novoa, Fernando; Poire, Daniel G.; Patterson, Molly M.; Ventosa, Antonio; Farias, Maria E.

    2016-01-01

    We combined nucleic acid-based molecular methods, biogeochemical measurements, and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity, and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions, and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea) in bulk samples, and in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity) in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB, and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum, and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems) than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity.

  17. Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile

    PubMed Central

    Fernandez, Ana B.; Rasuk, Maria C.; Visscher, Pieter T.; Contreras, Manuel; Novoa, Fernando; Poire, Daniel G.; Patterson, Molly M.; Ventosa, Antonio; Farias, Maria E.

    2016-01-01

    We combined nucleic acid-based molecular methods, biogeochemical measurements, and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity, and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions, and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea) in bulk samples, and in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity) in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB, and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum, and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems) than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity. PMID:27597845

  18. Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile.

    PubMed

    Fernandez, Ana B; Rasuk, Maria C; Visscher, Pieter T; Contreras, Manuel; Novoa, Fernando; Poire, Daniel G; Patterson, Molly M; Ventosa, Antonio; Farias, Maria E

    2016-01-01

    We combined nucleic acid-based molecular methods, biogeochemical measurements, and physicochemical characteristics to investigate microbial sedimentary ecosystems of Laguna Tebenquiche, Atacama Desert, Chile. Molecular diversity, and biogeochemistry of hypersaline microbial mats, rhizome-associated concretions, and an endoevaporite were compared with: The V4 hypervariable region of the 16S rRNA gene was amplified by pyrosequencing to analyze the total microbial diversity (i.e., bacteria and archaea) in bulk samples, and in addition, in detail on a millimeter scale in one microbial mat and in one evaporite. Archaea were more abundant than bacteria. Euryarchaeota was one of the most abundant phyla in all samples, and particularly dominant (97% of total diversity) in the most lithified ecosystem, the evaporite. Most of the euryarchaeal OTUs could be assigned to the class Halobacteria or anaerobic and methanogenic archaea. Planctomycetes potentially also play a key role in mats and rhizome-associated concretions, notably the aerobic organoheterotroph members of the class Phycisphaerae. In addition to cyanobacteria, members of Chromatiales and possibly the candidate family Chlorotrichaceae contributed to photosynthetic carbon fixation. Other abundant uncultured taxa such as the candidate division MSBL1, the uncultured MBGB, and the phylum Acetothermia potentially play an important metabolic role in these ecosystems. Lithifying microbial mats contained calcium carbonate precipitates, whereas endoevoporites consisted of gypsum, and halite. Biogeochemical measurements revealed that based on depth profiles of O2 and sulfide, metabolic activities were much higher in the non-lithifying mat (peaking in the least lithified systems) than in lithifying mats with the lowest activity in endoevaporites. This trend in decreasing microbial activity reflects the increase in salinity, which may play an important role in the biodiversity.

  19. Scribble tracker: a matting-based approach for robust tracking.

    PubMed

    Fan, Jialue; Shen, Xiaohui; Wu, Ying

    2012-08-01

    Model updating is a critical problem in tracking. Inaccurate extraction of the foreground and background information in model adaptation would cause the model to drift and degrade the tracking performance. The most direct yet difficult solution to the drift problem is to obtain accurate boundaries of the target. We approach such a solution by proposing a novel model adaptation framework based on the combination of matting and tracking. In our framework, coarse tracking results automatically provide sufficient and accurate scribbles for matting, which makes matting applicable in a tracking system. Meanwhile, accurate boundaries of the target can be obtained from matting results even when the target has large deformation. An effective model combining short-term features and long-term appearances is further constructed and successfully updated based on such accurate boundaries. The model can successfully handle occlusion by explicit inference. Extensive experiments show that our adaptation scheme largely avoids model drift and significantly outperforms other discriminative tracking models. PMID:22745003

  20. A Modular Sensorized Mat for Monitoring Infant Posture

    PubMed Central

    Donati, Marco; Cecchi, Francesca; Bonaccorso, Filippo; Branciforte, Marco; Dario, Paolo; Vitiello, Nicola

    2014-01-01

    We present a novel sensorized mat for monitoring infant's posture through the measure of pressure maps. The pressure-sensitive mat is based on an optoelectronic technology developed in the last few years at Scuola Superiore Sant'Anna: a soft silicone skin cover, which constitutes the mat, participates in the transduction principle and provides the mat with compliance. The device has a modular structure (with a minimum of one and a maximum of six sub-modules, and a total surface area of about 1 m2) that enables dimensional adaptation of the pressure-sensitive area to different specific applications. The system consists of on-board electronics for data collection, pre-elaboration, and transmission to a remote computing unit for analysis and posture classification. In this work we present a complete description of the sensing apparatus along with its experimental characterization and validation with five healthy infants. PMID:24385029

  1. BIOGEOCHEMICAL STUDIES OF PHOTOSYNTHETIC MICROBIAL MATS AND THEIR BIOTA

    NASA Technical Reports Server (NTRS)

    DesMarais, David; Discipulo, M.; Turk, K.; Londry, K. L.

    2005-01-01

    Photosynthetic microbial mats offer an opportunity to define holistic functionality at the millimeter scale. At the same time. their biogeochemistry contributes to environmental processes on a planetary scale. These mats are possibly direct descendents of the most ancient biological communities; communities in which oxygenic photosynthesis might have been invented. Mats provide one of the best natural systems to study how microbial populations associate to control dynamic biogeochemical gradients. These are self- sustaining, complete ecosystems in which light energy absorbed over a dial (24 hour) cycle drives the synthesis of spatially-organized, diverse biomass. Tightly-coupled microorganisms in the mat have specialized metabolisms that catalyze transformations of carbon, nitrogen, sulfur, and a host of other elements.

  2. Microbial mats and the early evolution of life.

    PubMed

    Des Marais, D J

    1990-05-01

    Microbial mats have descended from perhaps the oldest and most widespread biological communities known. Mats harbor microbes that are crucial for studies of bacterial phylogeny and physiology. They illustrate how several oxygen-sensitive biochemical processes have adapted to oxygen, and they show how life adapted to dry land long before the rise of plants. The search for the earliest grazing protists and metazoa in stromatolites is aided by observations of mats: in them, organic compounds characteristic of ancient photosynthetic protists can be identified. Recent mat studies suggest that the 13C/12C increase observed over geological time in stromatolitic organic matter was driven at least in part by a long-term decline in atmospheric carbon dioxide levels.

  3. Microbial mats and the early evolution of life

    NASA Technical Reports Server (NTRS)

    Des Marais, D. J.

    1990-01-01

    Microbial mats have descended from perhaps the oldest and most widespread biological communities known. Mats harbor microbes that are crucial for studies of bacterial phylogeny and physiology. They illustrate how several oxygen-sensitive biochemical processes have adapted to oxygen, and they show how life adapted to dry land long before the rise of plants. The search for the earliest grazing protists and metazoa in stromatolites is aided by observations of mats: in them, organic compounds characteristic of ancient photosynthetic protists can be identified. Recent mat studies suggest that the 13C/12C increase observed over geological time in stromatolitic organic matter was driven at least in part by a long-term decline in atmospheric carbon dioxide levels.

  4. The MATS satellite mission - tomographic perspectives on the mesosphere

    NASA Astrophysics Data System (ADS)

    Christensen, Ole Martin; Gumbel, Jörg; Megner, Linda; Murtagh, Donal P.; Ivchenko, Nickolay

    2016-04-01

    MATS (Mesospheric Airglow/Aerosol Tomography and Spectroscopy) is a Swedish satellite mission scheduled for launch in 2019. MATS science focuses on mesospheric wave activity and noctilucent clouds. Primary measurement targets are O2 Atmospheric band dayglow and nightglow in the near infrared (759-767 nm) and sunlight scattered from noctilucent clouds in the ultraviolet (270-300 nm). While tomography provides horizontally and vertically resolved data, spectroscopy allows analysis in terms of mesospheric composition, temperature and cloud properties. During 2015, the design of the MATS instrument was finalized, and the first complete instrument design will be shown in this presentation. As a part of this work, simulated measurements were performed and inverted using a 3 dimensional tomographic algorithm based on the optimal estimation method. As a result, the first quantitative estimation of the instruments capabilities and performance figures can now be presented, and hence give a more accurate picture of the scientific opportunities that the MATS mission provides.

  5. Fabrication of nanofiber mats from electrospinning of functionalized polymers

    NASA Astrophysics Data System (ADS)

    Oktay, Burcu; Kayaman-Apohan, Nilhan; Erdem-Kuruca, Serap

    2014-08-01

    Electrospinning technique enabled us to prepare nanofibers from synthetic and natural polymers. In this study, it was aimed to fabricate electrospun poly(vinyl alcohol) (PVA) based nanofibers by reactive electrospinning process. To improve endurance of fiber toward to many solvents, PVA was functionalized with photo-crosslinkable groups before spinning. Afterward PVA was crosslinked by UV radiation during electrospinning process. The nanofiber mats were characterized by scanning electron microscopy (SEM). The results showed that homogenous, uniform and crosslinked PVA nanofibers in diameters of about 200 nm were obtained. Thermal stability of the nanofiber mat was investigated with thermal gravimetric analysis (TGA). Also the potential use of this nanofiber mats for tissue engineering was examined. Osteosarcoma (Saos) cells were cultured on the nanofiber mats.

  6. Microbial mats and modern stromatolites in Shark Bay, Western Australia

    NASA Technical Reports Server (NTRS)

    Golubic, S.

    1985-01-01

    Distribution, external morphology, texture, and microbial composition of microbial mats in Hamelin Pool, Shark Bay, Western Australia, have been studied and reviewed along a composite representative profile starting from the permanently submerged zone, across the zones of periodic flooding, toward permanently emerged land and coastal dunes. The following nine types of algal mats have been recognized: colloform, gelatinous, smooth, pincushion, tufted, mamillate, film, reticulate, and blister. Solar ponds represent a particular environment. The mat types represent microbial communities that are characterized by one or more dominant microorganisms. The colonization and stabilization of loose sediment is carried out by a microbial assemblage of generalists that prepare the ground for later replacement and succession by specialized microflora. Lithification of microbial mats takes place periodically, mainly during the austral summer. This process is destructive for the microbial community but increases the preservation potential of the stromatolitic structures.

  7. The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat.

    PubMed

    Estrella Alcamán, María; Fernandez, Camila; Delgado, Antonio; Bergman, Birgitta; Díez, Beatriz

    2015-10-01

    Cyanobacteria from Subsection V (Stigonematales) are important components of microbial mats in non-acidic terrestrial hot springs. Despite their diazotrophic nature (N2 fixers), their impact on the nitrogen cycle in such extreme ecosystems remains unknown. Here, we surveyed the identity and activity of diazotrophic cyanobacteria in the neutral hot spring of Porcelana (Northern Patagonia, Chile) during 2009 and 2011-2013. We used 16S rRNA and the nifH gene to analyze the distribution and diversity of diazotrophic cyanobacteria. Our results demonstrate the dominance of the heterocystous genus Mastigocladus (Stigonematales) along the entire temperature gradient of the hot spring (69-38 °C). In situ nitrogenase activity (acetylene reduction), nitrogen fixation rates (cellular uptake of (15)N2) and nifH transcription levels in the microbial mats showed that nitrogen fixation and nifH mRNA expression were light-dependent. Nitrogen fixation activities were detected at temperatures ranging from 58 °C to 46 °C, with maximum daily rates of 600 nmol C2H4 cm(-2) per day and 94.1 nmol N cm(-2) per day. These activity patterns strongly suggest a heterocystous cyanobacterial origin and reveal a correlation between nitrogenase activity and nifH gene expression during diurnal cycles in thermal microbial mats. N and C fixation in the mats contributed ~3 g N m(-2) per year and 27 g C m(-2) per year, suggesting that these vital demands are fully met by the diazotrophic and photoautotrophic capacities of the cyanobacteria in the Porcelana hot spring.

  8. The cyanobacterium Mastigocladus fulfills the nitrogen demand of a terrestrial hot spring microbial mat

    PubMed Central

    Estrella Alcamán, María; Fernandez, Camila; Delgado, Antonio; Bergman, Birgitta; Díez, Beatriz

    2015-01-01

    Cyanobacteria from Subsection V (Stigonematales) are important components of microbial mats in non-acidic terrestrial hot springs. Despite their diazotrophic nature (N2 fixers), their impact on the nitrogen cycle in such extreme ecosystems remains unknown. Here, we surveyed the identity and activity of diazotrophic cyanobacteria in the neutral hot spring of Porcelana (Northern Patagonia, Chile) during 2009 and 2011–2013. We used 16S rRNA and the nifH gene to analyze the distribution and diversity of diazotrophic cyanobacteria. Our results demonstrate the dominance of the heterocystous genus Mastigocladus (Stigonematales) along the entire temperature gradient of the hot spring (69–38 °C). In situ nitrogenase activity (acetylene reduction), nitrogen fixation rates (cellular uptake of 15N2) and nifH transcription levels in the microbial mats showed that nitrogen fixation and nifH mRNA expression were light-dependent. Nitrogen fixation activities were detected at temperatures ranging from 58 °C to 46 °C, with maximum daily rates of 600 nmol C2H4 cm−2 per day and 94.1 nmol N cm−2 per day. These activity patterns strongly suggest a heterocystous cyanobacterial origin and reveal a correlation between nitrogenase activity and nifH gene expression during diurnal cycles in thermal microbial mats. N and C fixation in the mats contributed ~3 g N m−2 per year and 27 g C m−2 per year, suggesting that these vital demands are fully met by the diazotrophic and photoautotrophic capacities of the cyanobacteria in the Porcelana hot spring. PMID:26230049

  9. The temperature response of methane emission in Arctic wet sedge tundra

    NASA Astrophysics Data System (ADS)

    Lim, Edward; Zona, Donatella

    2015-04-01

    Since the last glacial maximum Arctic tundra soils have acted as an important carbon sink, having accumulated carbon under cold, anaerobic conditions (Zona et al. 2009). Several studies indicate that recent climate warming has altered this balance, with the Arctic tundra now posited to be a significant annual source of atmospheric methane (CH4) (McGuire et al. 2012). Nonetheless, the response of Arctic tundra CH4 fluxes to continued climate warming remains uncertain. Laboratory and field studies indicate that CH4 fluxes are temperature sensitive, thus accurate calculation of the temperature sensitivity is vital for the prediction of future CH4 emission. For this, the increase in reaction rate over a 10°C range (Q10) is frequently used, with single fixed Q10 values (between 2 and 4) commonly incorporated into climate-carbon cycle models. However, the temperature sensitivity of CH4 emission can vary considerably depending on factors such as vegetation composition, water table and season. This promotes the use of spatially and seasonally variable Q10 values for accurate CH4 flux estimation under different future climate change scenarios. This study investigates the temperature sensitivity (Q10) of Arctic tundra methane fluxes, using an extensive number of soil cores (48) extracted from wet sedge polygonal tundra (Barrow Experimental Observatory, Alaska). 'Wet' and 'dry' cores were taken from the centre and raised perimeter of ice-wedge polygons, where the water tables are 0cm and -15cm respectively. Cores were incubated in two controlled environment chambers (University of Sheffield, UK) for 12 weeks under different thaw depth treatments (control and control + 6.8cm), water tables (surface and -15cm), and CO2 concentrations (400ppm and 850ppm) in a multifactorial manner. Chamber temperature was gradually increased from -5°C to 20°C, then gradually decreased to -5°C, with each temperature stage lasting one week. Average CH4 fluxes from 'dry' cores were consistently

  10. Biosphere/atmosphere CO2 exchange in tundra ecosystems - Community characteristics and relationships with multispectral surface reflectance

    NASA Technical Reports Server (NTRS)

    Whiting, Gary J.; Bartlett, David S.; Fan, Song-Miao; Bakwin, Peter S.; Wofsy, Steven C.

    1992-01-01

    CO2 exchange rates were measured at selected tundra sites near Bethel, Alaska using portable, climate-controlled, instrumented enclosures. The empirically modeled exchange rate for a representative area of vegetated tundra was 1.2 +/- 1.2 g/sq m/d, compared to a tower-measured exchange over the same time period of 1.1 +.0- 1.2 g/sq m/d. Net exchange in response to varying light levels was compared to wet meadow and dry upland tundra, and to the net exchange measured by the micrometeoroidal tower technique. The multispectral reflectance properties of the sites were measured and related to exchange rates in order to provide a quantitative foundation for the use of satellite remote sensing to monitor biosphere/atmosphere CO2 exchange in the tundra biome.

  11. Biosphere/atmosphere CO[sub 2] exchange in tundra ecosystems - community characteristics and relationships with multispectral surface reflectance

    SciTech Connect

    Whiting, G.J.; Bartlett, D.S.; Fan, Songmiao; Bakwin, P.S.; Wofsy, S.C. New Hampshire Univ., Durham Harvard Univ., Cambridge, MA )

    1992-10-01

    CO2 exchange rates were measured at selected tundra sites near Bethel, Alaska using portable, climate-controlled, instrumented enclosures. The empirically modeled exchange rate for a representative area of vegetated tundra was 1.2 +/- 1.2 g/sq m/d, compared to a tower-measured exchange over the same time period of 1.1 +.0- 1.2 g/sq m/d. Net exchange in response to varying light levels was compared to wet meadow and dry upland tundra, and to the net exchange measured by the micrometeoroidal tower technique. The multispectral reflectance properties of the sites were measured and related to exchange rates in order to provide a quantitative foundation for the use of satellite remote sensing to monitor biosphere/atmosphere CO[sub 2] exchange in the tundra biome. 28 refs.

  12. Commander Mattingly tangles with NOSL experiment on aft flight deck

    NASA Technical Reports Server (NTRS)

    1982-01-01

    Commander Mattingly uses Nighttime / Daytime Optical Survey of Lightning (NOSL) experiment on aft flight deck. Cables connecting the data recorder to 16mm data aquisition camera (DAC), electronic package, and optical sensor package become tangled as Mattingly points NOSL instrument out overhead aft flight deck window. His cap is also lost amidst the maze of wiring, tape recorder, and camera equipment onboard the Earth-orbiting Columbia, Orbiter Vehicle (OV) 102.

  13. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat.

    PubMed

    Fan, Haoxin; Bolhuis, Henk; Stal, Lucas J

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is present in both AOA and AOB, were assessed and the potential nitrification rates in these mats were measured. The potential nitrification rates in the three mat types were highest in autumn and lowest in summer. AOB and AOA amoA genes were present in all three mat types. The composition of the AOA and AOB communities in the mats of the tidal and intertidal stations, based on the diversity of amoA, were similar and clustered separately from the supratidal microbial mat. In all three mats AOB amoA genes were significantly more abundant than AOA amoA genes. The abundance of neither AOB nor AOA amoA genes correlated with the potential nitrification rates, but AOB amoA transcripts were positively correlated with the potential nitrification rate. The composition and abundance of amoA genes seemed to be partly driven by salinity, ammonium, temperature, and the nitrate/nitrite concentration. We conclude that AOB are responsible for the bulk of the ammonium oxidation in these coastal microbial mats. PMID:26648931

  14. The biogeochemistry of microbial mats, stromatolites and the ancient biosphere

    NASA Technical Reports Server (NTRS)

    Desmarais, D. J.; Canfield, D. E.

    1991-01-01

    Stromatolites offer an unparalleled geologic record of early life, because they constitute the oldest and most abundant recognizable remains of microbial ecosystems. Microbial mats are living homologs of stromatolites; thus, the physiology of the microbiota as well as the processes which create those features of mats (e.g., biomarker organic compounds, elemental and stable isotopic compositions) which are preserved in the ancient record. Observations of the carbon isotopic composition (delta C-13) of stromatolites and microbial mats were made and are consistent with the hypothesis that atmospheric CO2 concentrations have declined by at least one to two orders of magnitude during the past 2.5 Ga. Whereas delta C-13 values of carbonate carbon average about 0 permil during both the early and mid-Proterozoic, the delta C-13 values of stromatolitic organic matter increase from an average of -35 between 2.0 and 2.6 Ga ago to an average of about -28 about 1.0 Ga ago. Modern microbial mats in hypersaline environments have delta C-13 values typically in the range of -5 to -9, relative to an inorganic bicarbonate source at 0 permil. Both microbial mats and pur cultures of cyanobacteria grown in waters in near equilibrium with current atmospheric CO2 levels exhibit minimal discrimination against C-13. In contrast, hot spring cyanobacterial mats or cyanobacterial cultures grown under higher CO2 levels exhibit substantially greater discrimination. If care is taken to compare modern mats with stromatolites from comparable environments, it might be possible to estimate ancient levels of atmospheric CO2. In modern microbial mats, a tight coupling exists between photosynthetic organic carbon production and subsequent carbon oxidation, mostly by sulfate reduction. The rate of one process fuels a high rate of the other, with much of the sulfate reduction occurring within the same depth interval as oxygenic photosynthesis. Other aspects of this study are presented.

  15. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat

    PubMed Central

    Fan, Haoxin; Bolhuis, Henk; Stal, Lucas J.

    2015-01-01

    The first step of nitrification, the oxidation of ammonia to nitrite, can be performed by ammonia-oxidizing archaea (AOA) or ammonium-oxidizing bacteria (AOB). We investigated the presence of these two groups in three structurally different types of coastal microbial mats that develop along the tidal gradient on the North Sea beach of the Dutch barrier island Schiermonnikoog. The abundance and transcription of amoA, a gene encoding for the alpha subunit of ammonia monooxygenase that is present in both AOA and AOB, were assessed and the potential nitrification rates in these mats were measured. The potential nitrification rates in the three mat types were highest in autumn and lowest in summer. AOB and AOA amoA genes were present in all three mat types. The composition of the AOA and AOB communities in the mats of the tidal and intertidal stations, based on the diversity of amoA, were similar and clustered separately from the supratidal microbial mat. In all three mats AOB amoA genes were significantly more abundant than AOA amoA genes. The abundance of neither AOB nor AOA amoA genes correlated with the potential nitrification rates, but AOB amoA transcripts were positively correlated with the potential nitrification rate. The composition and abundance of amoA genes seemed to be partly driven by salinity, ammonium, temperature, and the nitrate/nitrite concentration. We conclude that AOB are responsible for the bulk of the ammonium oxidation in these coastal microbial mats. PMID:26648931

  16. The effect of a permafrost disturbance on growing-season carbon-dioxide fluxes in a high Arctic tundra ecosystem

    NASA Astrophysics Data System (ADS)

    Cassidy, Alison E.; Christen, Andreas; Henry, Gregory H. R.

    2016-04-01

    Soil carbon stored in high-latitude permafrost landscapes is threatened by warming and could contribute significant amounts of carbon to the atmosphere and hydrosphere as permafrost thaws. Thermokarst and permafrost disturbances, especially active layer detachments and retrogressive thaw slumps, are present across the Fosheim Peninsula, Ellesmere Island, Canada. To determine the effects of retrogressive thaw slumps on net ecosystem exchange (NEE) of CO2 in high Arctic tundra, we used two eddy covariance (EC) tower systems to simultaneously and continuously measure CO2 fluxes from a disturbed site and the surrounding undisturbed tundra. During the 32-day measurement period in the 2014 growing season, the undisturbed tundra was a small net sink (NEE = -0.1 g C m-2 d-1); however, the disturbed terrain of the retrogressive thaw slump was a net source (NEE = +0.4 g C m-2 d-1). Over the measurement period, the undisturbed tundra sequestered 3.8 g C m-2, while the disturbed tundra released 12.5 g C m-2. Before full leaf-out in early July, the undisturbed tundra was a small source of CO2 but shifted to a sink for the remainder of the sampling season (July), whereas the disturbed tundra remained a source of CO2 throughout the season. A static chamber system was also used to measure daytime fluxes in the footprints of the two towers, in both disturbed and undisturbed tundra, and fluxes were partitioned into ecosystem respiration (Re) and gross primary production (GPP). Average GPP and Re found in disturbed tundra were smaller (+0.40 µmol m-2 s-1 and +0.55 µmol m-2 s-1, respectively) than those found in undisturbed tundra (+1.19 µmol m-2 s-1 and +1.04 µmol m-2 s-1, respectively). Our measurements indicated clearly that the permafrost disturbance changed the high Arctic tundra system from a sink to a source for CO2 during the majority of the growing season (late June and July).

  17. The effect of a permafrost disturbance on growing-season carbon-dioxide fluxes in a high Arctic tundra ecosystem

    NASA Astrophysics Data System (ADS)

    Cassidy, A. E.; Christen, A.; Henry, G. H. R.

    2015-12-01

    Soil carbon stored in high-latitude permafrost landscapes is threatened by warming, and could contribute significant amounts of carbon to the atmosphere and hydrosphere as permafrost thaws. Permafrost disturbances, especially active layer detachments and retrogressive thaw slumps, have increased in frequency and magnitude across the Fosheim Peninsula, Ellesmere Island, Canada. To determine the effects of retrogressive thaw slumps on net ecosystem exchange (NEE) of CO2 in high Arctic tundra, we used two eddy covariance (EC) tower systems to simultaneously and continuously measure CO2 fluxes from a disturbed site and the surrounding undisturbed tundra. During the 32-day measurement period in the 2014 growing season the undisturbed tundra was a small net sink (NEE = -0.12 g C m-2 d-1); however, the disturbed terrain of the retrogressive thaw slump was a net source (NEE = +0.39 g C m-2 d-1). Over the measurement period, the undisturbed tundra sequestered 3.84 g C m-2, while the disturbed tundra released 12.48 g C m-2. Before full leaf out in early July, the undisturbed tundra was a small source of CO2, but shifted to a sink for the remainder of the sampling season (July), whereas the disturbed tundra remained a source of CO2 throughout the season. A static chamber system was also used to measure fluxes in the footprints of the two towers, in both disturbed and undisturbed tundra, and fluxes were partitioned into ecosystem respiration (Re) and gross primary production (GPP). Average GPP and Re found in disturbed tundra were smaller (+0.41 μmol m-2 s-1 and +0.50 μmol m-2 s-1, respectively) than those found in undisturbed tundra (+1.21 μmol m-2 s-1 and +1.00 μmol m-2 s-1, respectively). Our measurements indicated clearly that the permafrost disturbance changed the high Arctic tundra system from a sink to a source for CO2 during the growing season.

  18. Regulation of electron transfer processes affects phototrophic mat structure and activity.

    PubMed

    Ha, Phuc T; Renslow, Ryan S; Atci, Erhan; Reardon, Patrick N; Lindemann, Stephen R; Fredrickson, James K; Call, Douglas R; Beyenal, Haluk

    2015-01-01

    Phototrophic microbial mats are among the most diverse ecosystems in nature. These systems undergo daily cycles in redox potential caused by variations in light energy input and metabolic interactions among the microbial species. In this work, solid electrodes with controlled potentials were placed under mats to study the electron transfer processes between the electrode and the microbial mat. The phototrophic microbial mat was harvested from Hot Lake, a hypersaline, epsomitic lake located near Oroville (Washington, USA). We operated two reactors: graphite electrodes were polarized at potentials of -700 mVAg/AgCl [cathodic (CAT) mat system] and +300 mVAg/AgCl [anodic (AN) mat system] and the electron transfer rates between the electrode and mat were monitored. We observed a diel cycle of electron transfer rates for both AN and CAT mat systems. Interestingly, the CAT mats generated the highest reducing current at the same time points that the AN mats showed the highest oxidizing current. To characterize the physicochemical factors influencing electron transfer processes, we measured depth profiles of dissolved oxygen (DO) and sulfide in the mats using microelectrodes. We further demonstrated that the mat-to-electrode and electrode-to-mat electron transfer rates were light- and temperature-dependent. Using nuclear magnetic resonance (NMR) imaging, we determined that the electrode potential regulated the diffusivity and porosity of the microbial mats. Both porosity and diffusivity were higher in the CAT mats than in the AN mats. We also used NMR spectroscopy for high-resolution quantitative metabolite analysis and found that the CAT mats had significantly higher concentrations of osmoprotectants such as betaine and trehalose. Subsequently, we performed amplicon sequencing across the V4 region of the 16S rRNA gene of incubated mats to understand the impact of electrode potential on microbial community structure. These data suggested that variation in the

  19. Regulation of electron transfer processes affects phototrophic mat structure and activity.

    PubMed

    Ha, Phuc T; Renslow, Ryan S; Atci, Erhan; Reardon, Patrick N; Lindemann, Stephen R; Fredrickson, James K; Call, Douglas R; Beyenal, Haluk

    2015-01-01

    Phototrophic microbial mats are among the most diverse ecosystems in nature. These systems undergo daily cycles in redox potential caused by variations in light energy input and metabolic interactions among the microbial species. In this work, solid electrodes with controlled potentials were placed under mats to study the electron transfer processes between the electrode and the microbial mat. The phototrophic microbial mat was harvested from Hot Lake, a hypersaline, epsomitic lake located near Oroville (Washington, USA). We operated two reactors: graphite electrodes were polarized at potentials of -700 mVAg/AgCl [cathodic (CAT) mat system] and +300 mVAg/AgCl [anodic (AN) mat system] and the electron transfer rates between the electrode and mat were monitored. We observed a diel cycle of electron transfer rates for both AN and CAT mat systems. Interestingly, the CAT mats generated the highest reducing current at the same time points that the AN mats showed the highest oxidizing current. To characterize the physicochemical factors influencing electron transfer processes, we measured depth profiles of dissolved oxygen (DO) and sulfide in the mats using microelectrodes. We further demonstrated that the mat-to-electrode and electrode-to-mat electron transfer rates were light- and temperature-dependent. Using nuclear magnetic resonance (NMR) imaging, we determined that the electrode potential regulated the diffusivity and porosity of the microbial mats. Both porosity and diffusivity were higher in the CAT mats than in the AN mats. We also used NMR spectroscopy for high-resolution quantitative metabolite analysis and found that the CAT mats had significantly higher concentrations of osmoprotectants such as betaine and trehalose. Subsequently, we performed amplicon sequencing across the V4 region of the 16S rRNA gene of incubated mats to understand the impact of electrode potential on microbial community structure. These data suggested that variation in the

  20. Regulation of electron transfer processes affects phototrophic mat structure and activity

    PubMed Central

    Ha, Phuc T.; Renslow, Ryan S.; Atci, Erhan; Reardon, Patrick N.; Lindemann, Stephen R.; Fredrickson, James K.; Call, Douglas R.; Beyenal, Haluk

    2015-01-01

    Phototrophic microbial mats are among the most diverse ecosystems in nature. These systems undergo daily cycles in redox potential caused by variations in light energy input and metabolic interactions among the microbial species. In this work, solid electrodes with controlled potentials were placed under mats to study the electron transfer processes between the electrode and the microbial mat. The phototrophic microbial mat was harvested from Hot Lake, a hypersaline, epsomitic lake located near Oroville (Washington, USA). We operated two reactors: graphite electrodes were polarized at potentials of -700 mVAg/AgCl [cathodic (CAT) mat system] and +300 mVAg/AgCl [anodic (AN) mat system] and the electron transfer rates between the electrode and mat were monitored. We observed a diel cycle of electron transfer rates for both AN and CAT mat systems. Interestingly, the CAT mats generated the highest reducing current at the same time points that the AN mats showed the highest oxidizing current. To characterize the physicochemical factors influencing electron transfer processes, we measured depth profiles of dissolved oxygen (DO) and sulfide in the mats using microelectrodes. We further demonstrated that the mat-to-electrode and electrode-to-mat electron transfer rates were light- and temperature-dependent. Using nuclear magnetic resonance (NMR) imaging, we determined that the electrode potential regulated the diffusivity and porosity of the microbial mats. Both porosity and diffusivity were higher in the CAT mats than in the AN mats. We also used NMR spectroscopy for high-resolution quantitative metabolite analysis and found that the CAT mats had significantly higher concentrations of osmoprotectants such as betaine and trehalose. Subsequently, we performed amplicon sequencing across the V4 region of the 16S rRNA gene of incubated mats to understand the impact of electrode potential on microbial community structure. These data suggested that variation in the

  1. Methane Production by Microbial Mats Under Low Sulfate Concentrations

    NASA Technical Reports Server (NTRS)

    Bebout, Brad M.; Hoehler, Tori M.; Thamdrup, Bo; Albert, Dan; Carpenter, Steven P.; Hogan, Mary; Turk, Kendra; DesMarais, David J.

    2003-01-01

    Cyanobacterial mats collected in hypersaline salterns were incubated in a greenhouse under low sulfate concentrations ([SO4]) and examined for their primary productivity and emissions of methane and other major carbon species. Atmospheric greenhouse warming by gases such as carbon dioxide and methane must have been greater during the Archean than today in order to account for a record of moderate to warm paleoclemates, despite a less luminous early sun. It has been suggested that decreased levels of oxygen and sulfate in Archean oceans could have significantly stimulated microbial methanogenesis relative to present marine rates, with a resultant increase in the relative importance of methane in maintaining the early greenhouse. We maintained modern microbial mats, models of ancient coastal marine communities, in artificial brine mixtures containing both modern [SO4=] (ca. 70 mM) and "Archean" [SO4] (less than 0.2 mM). At low [SO4], primary production in the mats was essentially unaffected, while rates of sulfate reduction decreased by a factor of three, and methane fluxes increased by up to ten-fold. However, remineralization by methanogenesis still amounted to less than 0.4 % of the total carbon released by the mats. The relatively low efficiency of conversion of photosynthate to methane is suggested to reflect the particular geometry and chemical microenvironment of hypersaline cyanobacterial mats. Therefore, such mats w-ere probably relatively weak net sources of methane throughout their 3.5 Ga history, even during periods of low- environmental levels oxygen and sulfate.

  2. Cyanobacterial reuse of extracellular organic carbon in microbial mats.

    PubMed

    Stuart, Rhona K; Mayali, Xavier; Lee, Jackson Z; Craig Everroad, R; Hwang, Mona; Bebout, Brad M; Weber, Peter K; Pett-Ridge, Jennifer; Thelen, Michael P

    2016-05-01

    Cyanobacterial organic matter excretion is crucial to carbon cycling in many microbial communities, but the nature and bioavailability of this C depend on unknown physiological functions. Cyanobacteria-dominated hypersaline laminated mats are a useful model ecosystem for the study of C flow in complex communities, as they use photosynthesis to sustain a more or less closed system. Although such mats have a large C reservoir in the extracellular polymeric substances (EPSs), the production and degradation of organic carbon is not well defined. To identify extracellular processes in cyanobacterial mats, we examined mats collected from Elkhorn Slough (ES) at Monterey Bay, California, for glycosyl and protein composition of the EPS. We found a prevalence of simple glucose polysaccharides containing either α or β (1,4) linkages, indicating distinct sources of glucose with differing enzymatic accessibility. Using proteomics, we identified cyanobacterial extracellular enzymes, and also detected activities that indicate a capacity for EPS degradation. In a less complex system, we characterized the EPS of a cyanobacterial isolate from ES, ESFC-1, and found the extracellular composition of biofilms produced by this unicyanobacterial culture were similar to that of natural mats. By tracing isotopically labeled EPS into single cells of ESFC-1, we demonstrated rapid incorporation of extracellular-derived carbon. Taken together, these results indicate cyanobacteria reuse excess organic carbon, constituting a dynamic pool of extracellular resources in these mats. PMID:26495994

  3. Cyanobacterial reuse of extracellular organic carbon in microbial mats

    PubMed Central

    Stuart, Rhona K; Mayali, Xavier; Lee, Jackson Z; Craig Everroad, R; Hwang, Mona; Bebout, Brad M; Weber, Peter K; Pett-Ridge, Jennifer; Thelen, Michael P

    2016-01-01

    Cyanobacterial organic matter excretion is crucial to carbon cycling in many microbial communities, but the nature and bioavailability of this C depend on unknown physiological functions. Cyanobacteria-dominated hypersaline laminated mats are a useful model ecosystem for the study of C flow in complex communities, as they use photosynthesis to sustain a more or less closed system. Although such mats have a large C reservoir in the extracellular polymeric substances (EPSs), the production and degradation of organic carbon is not well defined. To identify extracellular processes in cyanobacterial mats, we examined mats collected from Elkhorn Slough (ES) at Monterey Bay, California, for glycosyl and protein composition of the EPS. We found a prevalence of simple glucose polysaccharides containing either α or β (1,4) linkages, indicating distinct sources of glucose with differing enzymatic accessibility. Using proteomics, we identified cyanobacterial extracellular enzymes, and also detected activities that indicate a capacity for EPS degradation. In a less complex system, we characterized the EPS of a cyanobacterial isolate from ES, ESFC-1, and found the extracellular composition of biofilms produced by this unicyanobacterial culture were similar to that of natural mats. By tracing isotopically labeled EPS into single cells of ESFC-1, we demonstrated rapid incorporation of extracellular-derived carbon. Taken together, these results indicate cyanobacteria reuse excess organic carbon, constituting a dynamic pool of extracellular resources in these mats. PMID:26495994

  4. Invasive algal mats degrade coral reef physical habitat quality

    NASA Astrophysics Data System (ADS)

    Martinez, Jonathan A.; Smith, Celia M.; Richmond, Robert H.

    2012-03-01

    Invasive species alter the ecology of marine ecosystems through a variety of mechanisms or combination of mechanisms. This study documented critical physical parameters altered by the invasive red macroalga Gracilaria salicornia in situ, including: reduced irradiance, increased sedimentation, and marked variation in diurnal dissolved oxygen and pH cycles in Kāne'ohe Bay, O'ahu, Hawai'i. Paired studies showed that algal mats reduced irradiance by 99% and doubled sediment accumulation. Several mats developed hypoxia and hyperoxia in the extreme minima and maxima, though there was no statistical difference detected in the mean or the variability of dissolved oxygen between different 30 min time points of 24 h cycles between algal mat-open reef pairs. The algal mat significantly acidified the water under the algal mat by decreasing pH by 0.10-0.13 pH units below open reef pH. A minimum of pH 7.47 occurred between 14 and 19 h after sunrise. Our combined results suggest that mats of G. salicornia can alter various physical parameters on a fine scale and time course not commonly detected. These changes in parameters give insight into the underlying basis for negative impact, and suggest new ways in which the presence of invasive species leads to decline of coral reef ecosystems.

  5. Relative roles of different-sized herbivores and plant-plant interactions in tall shrub tundra vegetation

    NASA Astrophysics Data System (ADS)

    Ravolainen, Virve; Ims, Rolf; Bårdsen, Bård-Jørgen; Stien, Audun; Kollstrøm, Julie; Lægreid, Eiliv; Bråthen, Kari Anne

    2013-04-01

    Tall shrubs play important roles in the ecology of Arctic tundra ecosystems, including support of high shrub-associated biodiversity and regulation of a range of ecosystem processes. Tall shrub patches and herbaceous vegetation surrounding them often form a two-state vegetation mosaic. Such tall shrub tundra vegetation is an important locus for current vegetation changes in the Arctic. Both abiotic and biotic drivers are known to influence the shrub component. However, although expansion of the shrub state has received much focus lately, relative strengths of the multiple drivers of vegetation state are currently not fully understood. We investigated the role of herbivory relative to temperature and relative to plant-plant interactions, conducting a field survey and experimental studies at large spatial scales in riparian tall shrub tundra in Norway. We found both summer temperatures and summer grazing by reindeer (Rangifer tarandus) to affect tall shrub distribution and expansion potential. Furthermore, we found strong and rapid shrub growth change in response to abundance of key arctic herbivores; small rodents. Finally, we quantified the relative importance of neighboring plants and both herbivore types to recruiting tall shrubs. The previously unforeseen rate at which tall shrub tundra responded to altered herbivore pressures further exemplifies its central role in the tundra ecosystems, promoting tall shrub tundra as a bell-whether of change with respect to both abiotic and biotic drivers. While many of the results clearly relate to herbivory, neighboring plants or climate as drivers, some variation remains unexplained warranting future research focus on this highly dynamic part of the tundra ecosystem. Our results suggest that spatially variable biotic interactions are likely to modify forcing by climate, calling for an ecosystem approach when studying change in tundra ecosystems.

  6. Response of a tundra ecosystem to elevated atmospheric carbon dioxide and CO{sub 2}-induced climate change. Progress report

    SciTech Connect

    Oechel, W.C.

    1992-04-01

    This report presents the progress on the DOE funded project: ``Response of a Tundra Ecosystem to Elevated Atmospheric Carbon Dioxide and CO{sub 2}-Induced Climate Change.`` The current funding cycle was initiated on September 1, 1989, to run through August 31, 1992. There was an initial reduction in scope dictated by budget availabilities, primarily manipulations of CO{sub 2}, temperature and nutrients at a wet tundra located at Barrow Alaska. These experiments still need to be done over the mid- to longer term in order to accurately predict, apriori, the effects of climate change on the arctic tundra as well as possible feedbacks. Coordination and cooperation with other agencies was initiated in 1990 and formally proposed in our 1991 renewal at the national and international level and has become an important aspect of the research. To accurately and precisely scale plot and transect measurements to the circumpolar tundra is beyond the scope of the current DOE project. It is possible, however to determine the patterns and controls of CO{sub 2} flux from the current circumpolar arctic tundra with the involvement of additional agencies and governments. Results from the past two years of this project confirm that the arctic has become a source of CO{sub 2} to the atmosphere. This change coincides with recent climatic variation in the arctic, and suggest a positive feedback of arctic ecosystems on atmospheric CO{sub 2} and global change. Measurements along a latitudinal gradient across the north slope of Alaska indicate a loss of carbon from tussock tundra and wet tundra, decreasing in magnitude along a decreasing gradient of temperature but an increasing gradient in soil moisture. These data are in agreement with work done on tussock tundra in 1983{endash}85 and 1987.

  7. Response of a tundra ecosystem to elevated atmospheric carbon dioxide and CO sub 2 -induced climate change

    SciTech Connect

    Oechel, W.C.

    1992-04-01

    This report presents the progress on the DOE funded project: Response of a Tundra Ecosystem to Elevated Atmospheric Carbon Dioxide and CO{sub 2}-Induced Climate Change.'' The current funding cycle was initiated on September 1, 1989, to run through August 31, 1992. There was an initial reduction in scope dictated by budget availabilities, primarily manipulations of CO{sub 2}, temperature and nutrients at a wet tundra located at Barrow Alaska. These experiments still need to be done over the mid- to longer term in order to accurately predict, apriori, the effects of climate change on the arctic tundra as well as possible feedbacks. Coordination and cooperation with other agencies was initiated in 1990 and formally proposed in our 1991 renewal at the national and international level and has become an important aspect of the research. To accurately and precisely scale plot and transect measurements to the circumpolar tundra is beyond the scope of the current DOE project. It is possible, however to determine the patterns and controls of CO{sub 2} flux from the current circumpolar arctic tundra with the involvement of additional agencies and governments. Results from the past two years of this project confirm that the arctic has become a source of CO{sub 2} to the atmosphere. This change coincides with recent climatic variation in the arctic, and suggest a positive feedback of arctic ecosystems on atmospheric CO{sub 2} and global change. Measurements along a latitudinal gradient across the north slope of Alaska indicate a loss of carbon from tussock tundra and wet tundra, decreasing in magnitude along a decreasing gradient of temperature but an increasing gradient in soil moisture. These data are in agreement with work done on tussock tundra in 1983{endash}85 and 1987.

  8. Le matérialisme scientifique

    NASA Astrophysics Data System (ADS)

    Meunier, Jean-François

    2004-03-01

    De nos jours, il arrive quotidiennement aux grands hommes d'avoir à fréquenter d'ignorants mortels épris d'une conviction maladive que la science est la grande responsable de tous les maux du monde. Évidemment sans physique atomique, il n'y aurait pas eu d'Hiroshima et sans révolution industrielle, pas de pollution et etc. Cependant, ces accusations envers le progrès technique sont tout à fait injustes, irréfléchies et, j'irai même jusqu'à dire, irresponsables, puisque le calcul, i.e. la planification, même la plus élémentaire, est ce qui caractérise le mieux, pragmatiquement, la société humaine. À mon avis, les problèmes sociaux tireraient plutôt leur origine de sciences sociales irréalistes, qui, concrètment, inspireraient ou serviraient d'alibis à ceux qui détiennent véritablement le pouvoir. Dans cet article, je tenterai donc de démontrer la meilleure véracité et efficacité du matérialisme scientifique. Cette doctrine, dont Mario Bunge est le plus illustre représentant, s'appuy sur les résultats théoriques et expérimentaux des sciences factuelles ainsi que sur l'exactitude logique des mathématiques, utilisées ici comme langage universel de l'expression des idées. Cette conception philosophique qui s'inspire principalement du modèle des théories physiques, stipule que les réalités sociales sont, comme tout autre réalité, matérielles, mathématisables et représentables comme des systèmes en interaction. En fait, le modèle des physiciens ayant historiquement fait ses preuves en matière de testabilité et de cohérence interne est proposé d'être appliquer aux sciences sociales, aujourd'hui scindées des sciences dites pures sous l'inspiration des pseudo penseurs néo-kantiens, phénoménologiques et post-moderne. Cette nouvelle approche permettrait ainsi d'évoluer plus exactement vers une compréhension des bases sociales et biologiques du comportement humain afin de développer une éthique sans cesse plus r

  9. Long-term recovery patterns of arctic tundra after winter seismic exploration.

    PubMed

    Jorgenson, Janet C; Ver Hoef, Jay M; Jorgenson, M T

    2010-01-01

    In response to the increasing global demand for energy, oil exploration and development are expanding into frontier areas of the Arctic, where slow-growing tundra vegetation and the underlying permafrost soils are very sensitive to disturbance. The creation of vehicle trails on the tundra from seismic exploration for oil has accelerated in the past decade, and the cumulative impact represents a geographic footprint that covers a greater extent of Alaska's North Slope tundra than all other direct human impacts combined. Seismic exploration for oil and gas was conducted on the coastal plain of the Arctic National Wildlife Refuge, Alaska, USA, in the winters of 1984 and 1985. This study documents recovery of vegetation and permafrost soils over a two-decade period after vehicle traffic on snow-covered tundra. Paired permanent vegetation plots (disturbed vs. reference) were monitored six times from 1984 to 2002. Data were collected on percent vegetative cover by plant species and on soil and ground ice characteristics. We developed Bayesian hierarchical models, with temporally and spatially autocorrelated errors, to analyze the effects of vegetation type and initial disturbance levels on recovery patterns of the different plant growth forms as well as soil thaw depth. Plant community composition was altered on the trails by species-specific responses to initial disturbance and subsequent changes in substrate. Long-term changes included increased cover of graminoids and decreased cover of evergreen shrubs and mosses. Trails with low levels of initial disturbance usually improved well over time, whereas those with medium to high levels of initial disturbance recovered slowly. Trails on ice-poor, gravel substrates of riparian areas recovered better than those on ice-rich loamy soils of the uplands, even after severe initial damage. Recovery to pre-disturbance communities was not possible where trail subsidence occurred due to thawing of ground ice. Previous studies of

  10. Modeling the spatiotemporal variability in subsurface thermal regimes across a low-relief polygonal tundra landscape

    DOE PAGES

    Kumar, Jitendra; Collier, Nathan; Bisht, Gautam; Mills, Richard T.; Thornton, Peter E.; Iversen, Colleen M.; Romanovsky, Vladimir

    2016-09-27

    Vast carbon stocks stored in permafrost soils of Arctic tundra are under risk of release to the atmosphere under warming climate scenarios. Ice-wedge polygons in the low-gradient polygonal tundra create a complex mosaic of microtopographic features. This microtopography plays a critical role in regulating the fine-scale variability in thermal and hydrological regimes in the polygonal tundra landscape underlain by continuous permafrost. Modeling of thermal regimes of this sensitive ecosystem is essential for understanding the landscape behavior under the current as well as changing climate. Here, we present an end-to-end effort for high-resolution numerical modeling of thermal hydrology at real-world fieldmore » sites, utilizing the best available data to characterize and parameterize the models. We also develop approaches to model the thermal hydrology of polygonal tundra and apply them at four study sites near Barrow, Alaska, spanning across low to transitional to high-centered polygons, representing a broad polygonal tundra landscape. A multiphase subsurface thermal hydrology model (PFLOTRAN) was developed and applied to study the thermal regimes at four sites. Using a high-resolution lidar digital elevation model (DEM), microtopographic features of the landscape were characterized and represented in the high-resolution model mesh. The best available soil data from field observations and literature were utilized to represent the complex heterogeneous subsurface in the numerical model. Simulation results demonstrate the ability of the developed modeling approach to capture – without recourse to model calibration – several aspects of the complex thermal regimes across the sites, and provide insights into the critical role of polygonal tundra microtopography in regulating the thermal dynamics of the carbon-rich permafrost soils. Moreover, areas of significant disagreement between model results and observations highlight the importance of field

  11. Tundra fire alters stream water chemistry and benthic invertebrate communities, North Slope, Alaska

    NASA Astrophysics Data System (ADS)

    Allen, A. R.; Bowden, W. B.; Kling, G. W.; Schuett, E.; Kostrzewski, J. M.; Kolden Abatzoglou, C.; Findlay, R. H.

    2010-12-01

    Increased fire frequency and severity are potentially important consequences of climate change in high latitude ecosystems. The 2007 Anaktuvuk River fire, which burned from July until October, is the largest recorded tundra fire from Alaska's north slope (≈1,000 km2). The immediate effects of wildfire on water chemistry and biotic assemblages in tundra streams are heretofore unknown. We hypothesized that a tundra fire would increase inorganic nutrient inputs to P-limited tundra streams, increasing primary production and altering benthic macroinvertebrate community structure. We examined linkages among: 1) percentage of riparian zone and overall watershed vegetation burned, 2) physical, chemical and biological stream characteristics, and 3) macroinvertebrate communities in streams draining burned and unburned watersheds during the summers of 2008 and 2009. Streams in burned watersheds contained higher mean concentrations of soluble reactive phosphorus (SRP), ammonium (NH4+), and dissolved organic carbon (DOC). In contrast, stream nitrate (NO3-) concentrations were lower in burned watersheds. The net result was that the tundra fire did not affect concentrations of dissolved inorganic nitrogen (NH4+ + NO3-). In spite of increased SRP, benthic chlorophyll-a biomass was not elevated. Macroinvertebrate abundances were 1.5 times higher in streams draining burned watersheds; Chironomidae midges, Nematodes, and Nemoura stoneflies showed the greatest increases in abundance. Multivariate multiple regression identified environmental parameters associated with the observed changes in the macroinvertebrate communities. Since we identified stream latitude as a significant predictor variable, latitude was included in the model as a covariate. After removing the variation associated with latitude, 67.3 % of the variance in macroinvertebrate community structure was explained by a subset of 7 predictor variables; DOC, conductivity, mean temperature, NO3-, mean discharge, SRP and NH

  12. Long-term recovery patterns of arctic tundra after winter seismic exploration.

    PubMed

    Jorgenson, Janet C; Ver Hoef, Jay M; Jorgenson, M T

    2010-01-01

    In response to the increasing global demand for energy, oil exploration and development are expanding into frontier areas of the Arctic, where slow-growing tundra vegetation and the underlying permafrost soils are very sensitive to disturbance. The creation of vehicle trails on the tundra from seismic exploration for oil has accelerated in the past decade, and the cumulative impact represents a geographic footprint that covers a greater extent of Alaska's North Slope tundra than all other direct human impacts combined. Seismic exploration for oil and gas was conducted on the coastal plain of the Arctic National Wildlife Refuge, Alaska, USA, in the winters of 1984 and 1985. This study documents recovery of vegetation and permafrost soils over a two-decade period after vehicle traffic on snow-covered tundra. Paired permanent vegetation plots (disturbed vs. reference) were monitored six times from 1984 to 2002. Data were collected on percent vegetative cover by plant species and on soil and ground ice characteristics. We developed Bayesian hierarchical models, with temporally and spatially autocorrelated errors, to analyze the effects of vegetation type and initial disturbance levels on recovery patterns of the different plant growth forms as well as soil thaw depth. Plant community composition was altered on the trails by species-specific responses to initial disturbance and subsequent changes in substrate. Long-term changes included increased cover of graminoids and decreased cover of evergreen shrubs and mosses. Trails with low levels of initial disturbance usually improved well over time, whereas those with medium to high levels of initial disturbance recovered slowly. Trails on ice-poor, gravel substrates of riparian areas recovered better than those on ice-rich loamy soils of the uplands, even after severe initial damage. Recovery to pre-disturbance communities was not possible where trail subsidence occurred due to thawing of ground ice. Previous studies of

  13. Swi6, a Gene Required for Mating-Type Switching, Prohibits Meiotic Recombination in the Mat2-Mat3 ``cold Spot'' of Fission Yeast

    PubMed Central

    Klar, AJS.; Bonaduce, M. J.

    1991-01-01

    Mitotic interconversion of the mating-type locus (mat1) of the fission yeast Schizosaccharomyces pombe is initiated by a double-strand break at mat1. The mat2 and mat3 loci act as nonrandom donors of genetic information for mat1 switching such that switches occur primarily (or only) to the opposite mat1 allele. Location of the mat1 ``hot spot'' for transposition should be contrasted with the ``cold spot'' of meiotic recombination located within the adjoining mat2-mat3 interval. That is, meiotic interchromosomal recombination in mat2, mat3 and the intervening 15-kilobase region does not occur at all. swi2 and swi6 switching-deficient mutants possess the normal level of double-strand break at mat1, yet they fail to switch efficiently. By testing for meiotic recombination in the cold spot, we found the usual lack of recombination in a swi2 mutant but a significant level of recombination in a swi6 mutant. Therefore, the swi6 gene function is required to keep the donor loci inert for interchromosomal recombination. This finding, combined with the additional result that switching primarily occurs intrachromosomally, suggests that the donor loci are made accessible for switching by folding them onto mat1, thus causing the cold spot of recombination. PMID:1783290

  14. ERB master archival tape specification no. T 134081 ERB MAT, revision 1

    NASA Technical Reports Server (NTRS)

    1984-01-01

    The Earth radiation budget (ERB)MAT tapes are generated by the ERB MATGEN software using the IBM 3081 computer system operated by the Science and Applications Computer Center at Goddard Space Flight Center. All MAT's are 9-track and MAT data are in ascending time order. The gross tape format for NIMBUS year-1 and year-2 MAT's is different from the format of MAT's starting with year-3. The MATs from the first two years are to contain one day's worth of data while all other MATs are to contain multiple day's worth of data stacked onto the tapes.

  15. The dynamics of the tundra-taiga boundary: an overview and suggested coordinated and integrated approach to research.

    PubMed

    Callaghan, Terry V; Crawford, Robert M M; Eronen, Matti; Hofgaard, Annika; Payette, Serge; Rees, W Gareth; Skre, Oddvar; Sveinbjörnsson, Bjartmar; Vlassova, Tatiana K; Werkman, Ben R

    2002-08-01

    The tundra-taiga boundary stretches for more than 13,400 km around the Northern Hemisphere and is probably the Earth's greatest vegetation transition. The trees that define the boundary have been sensitive to climate changes in the past and models of future vegetation distribution suggest a rapid and dramatic invasion of the tundra by the taiga. Such changes would generate both positive and negative feedbacks to the climate system and the balance could result in a net warming effect. However, the boundary is becoming increasingly affected by human activities that remove trees and degrade forest-tundra into tundra-like areas. Because of the vastness and remoteness of the tundra-taiga boundary, and of methodological problems such as problematic definitions and lack of standardized methods to record the location and characteristics of the ecotone, a project group has been established under the auspices of the International Arctic Science Committee (IASC). This paper summarizes the initial output of the group and focuses on our uncertainties in understanding the current processes at the tundra-taiga boundary and the conflicts between model predictions of changes in the location of the boundary and contrasting recently observed changes due to human activities. Finally, we present recommendations for a coordinated international approach to the problem and invite the international community to join us in reducing the uncertainties about the dynamics of the ecotone and their consequences.

  16. The impact of climate change on ecosystem carbon dynamics at the Scandinavian mountain birch forest-tundra heath ecotone.

    PubMed

    Sjögersten, Sofie; Wookey, Philip A

    2009-02-01

    Changes in temperature and moisture resulting from climate change are likely to strongly modify the ecosystem carbon sequestration capacity in high-latitude areas, both through vegetation shifts and via direct warming effects on photosynthesis and decomposition. This paper offers a synthesis of research addressing the potential impacts of climate warming on soil processes and carbon fluxes at the forest-tundra ecotone in Scandinavia. Our results demonstrated higher rates of organic matter decomposition in mountain birch forest than in tundra heath soils, with markedly shallower organic matter horizons in the forest. Field and laboratory experiments suggest that increased temperatures are likely to increase CO2 efflux from both tundra and forest soil providing moisture availability does not become limiting for the decomposition process. Furthermore, colonization of tundra heath by mountain birch forest would increase rates of decomposition, and thus CO2 emissions, from the tundra heath soils, which currently store substantial amounts of potentially labile carbon. Mesic soils underlying both forest and tundra heath are currently weak sinks of atmospheric methane, but the strength of this sink could be increased with climate warming and/or drying.

  17. [Characteristics of erythrocyte lipids in blood of tundra voles (Microtus oeconomus Pall.) inhabiting areas with increased natural radioactivity].

    PubMed

    Shevchenko, O G; Shuktomova, I I; Shishkina, L N

    2011-01-01

    Interrelations between the lipid characteristics of the blood erythrocytes and 226Ra accumulation in the body of tundra voles (Microtus oeconomus Pall.) inhabiting areas with different levels of the radiation background were investigated. It is shown that the ratio of the phospholipid (PL) fractions which cause the blood erythrocyte structure depends on the phase of the population cycle, as well as on the sex and age of tundra voles. The statistically significant interrelation between lysoforms and the sphingomielin content has been revealed in the blood erythrocyte PL of tundra voles; its scale somewhat differs for the animals from the reference and Ra areas. The peroxide concentration in the blood erythrocyte lipids of tundra voles from the Ra area exceeded the control values in all mature groups of the animals trapped at the depression phase of the population density. The 226Ra content in the bodies of the tundra voles which were trapped in the Ra area at the increased phase of the population cycle is for certain higher than that for the animals from the reference area. Interrelations between the lipid peroxidation parameters in the blood erythrocytes and the body 226Ra content for separate sex-age groups of tundra voles have been revealed.

  18. Epicardial delivery of VEGF and cardiac stem cells guided by 3-dimensional PLLA mat enhancing cardiac regeneration and angiogenesis in acute myocardial infarction.

    PubMed

    Chung, Hye-Jin; Kim, Jong-Tae; Kim, Hee-Jung; Kyung, Hei-Won; Katila, Pramila; Lee, Jeong-Han; Yang, Tae-Hyun; Yang, Young-Il; Lee, Seung-Jin

    2015-05-10

    Congestive heart failure is mostly resulted in a consequence of the limited myocardial regeneration capacity after acute myocardial infarction. Targeted delivery of proangiogenic factors and/or stem cells to the ischemic myocardium is a promising strategy for enhancing their local and sustained therapeutic effects. Herein, we designed an epicardial delivery system of vascular endothelial growth factor (VEGF) and cardiac stem cells (CSCs) using poly(l-lactic acid) (PLLA) mat applied to the acutely infarcted myocardium. The fibrous VEGF-loaded PLLA mat was fabricated by an electrospinning method using PLLA solution emulsified VEGF. This mat not only allowed for sustained release of VEGF for 4weeks but boosted migration and proliferation of both endothelial cells and CSCs in vitro. Furthermore, sustained release of VEGF showed a positive effect on in vitro capillary-like network formation of endothelial cells compared with bolus treatment of VEGF. PLLA mat provided a permissive 3-dimensional (3D) substratum that led to spontaneous cardiomyogenic differentiation of CSCs in vitro. Notably, sustained stimulation by VEGF-loaded PLLA mat resulted in a substantial increase in the expression of proangiogenic mRNAs of CSCs in vitro. The epicardially implanted VEGF-loaded PLLA mat showed modest effects on angiogenesis and cardiomyogenesis in the acutely infarcted hearts. However, co-implantation of VEGF and CSCs using the PLLA mat showed meaningful therapeutic effects on angiogenesis and cardiomyogenesis compared with controls, leading to reduced cardiac remodeling and enhanced global cardiac function. Collectively, the PLLA mat allowed a smart cargo that enabled the sustained release of VEGF and the delivery of CSCs, thereby synergistically inducing angiogenesis and cardiomyogenesis in acute myocardial infarction.

  19. Morphology and properties of the soils of permafrost peatlands in the southeast of the Bol'shezemel'skaya tundra

    NASA Astrophysics Data System (ADS)

    Kaverin, D. A.; Pastukhov, A. V.; Lapteva, E. M.; Biasi, C.; Marushchak, M.; Martikainen, P.

    2016-05-01

    The morphology and properties of the soils of permafrost peatlands in the southeast of the Bol'shezemel'skaya tundra are characterized. The soils developing in the areas of barren peat circles differ from oligotrophic permafrost-affected peat soils (Cryic Histosols) of vegetated peat mounds in a number of morphological and physicochemical parameters. The soils of barren circles are characterized by the wellstructured surface horizons, relatively low exchangeable acidity, and higher rates of decomposition and humification of organic matter. It is shown that the development of barren peat circles on tops of peat mounds is favored by the activation of erosional and cryogenic processes in the topsoil. The role of winter wind erosion in the destruction of the upper peat and litter horizons is demonstrated. A comparative analysis of the temperature regime of soils of vegetated peat mounds and barren peat circles is presented. The soil-geocryological complex of peat mounds is a system consisting of three major layers: seasonally thawing layer-upper permafrost-underlying permafrost. The upper permafrost horizons of peat mounds at the depth of 50-90 cm are morphologically similar to the underlying permafrost. However, these layers differ in their physicochemical properties, especially in the composition and properties of their organic matter.

  20. Photosynthetic Microbial Mats are Exemplary Sources of Diverse Biosignatures (Invited)

    NASA Astrophysics Data System (ADS)

    Des Marais, D. J.; Jahnke, L. L.

    2013-12-01

    Marine cyanobacterial microbial mats are widespread, compact, self-contained ecosystems that create diverse biosignatures and have an ancient fossil record. Within the mats, oxygenic photosynthesis provides organic substrates and O2 to the community. Both the absorption and scattering of light change the intensity and spectral composition of incident radiation as it penetrates a mat. Some phototrophs utilize infrared light near the base of the photic zone. A mat's upper layers can become highly reduced and sulfidic at night. Counteracting gradients of O2 and sulfide shape the chemical environment and provide daily-contrasting microenvironments separated on a scale of a few mm. Radiation hazards (UV, etc.), O2 and sulfide toxicity elicit motility and other physiological responses. This combination of benefits and hazards of light, O2 and sulfide promotes the allocation of various essential mat processes between light and dark periods and to various depths in the mat. Associated nonphotosynthetic communities, including anaerobes, strongly influence many of the ecosystem's overall characteristics, and their processes affect any biosignatures that enter the fossil record. A biosignature is an object, substance and/or pattern whose origin specifically requires a biological agent. The value of a biosignature depends not only on the probability of life creating it, but also on the improbability of nonbiological processes producing it. Microbial mats create biosignatures that identify particular groups of organisms and also reveal attributes of the mat ecosystem. For example, branched hydrocarbons and pigments can be diagnostic of cyanobacteria and other phototrophic bacteria, and isoprenoids can indicate particular groups of archea. Assemblages of lipid biosignatures change with depth due to changes in microbial populations and diagenetic transformations of organic matter. The 13C/12C values of organic matter and carbonates reflect isotopic discrimination by particular

  1. InSAR detects increase in surface subsidence caused by an Arctic tundra fire

    NASA Astrophysics Data System (ADS)

    Liu, Lin; Jafarov, Elchin E.; Schaefer, Kevin M.; Jones, Benjamin M.; Zebker, Howard A.; Williams, Christopher A.; Rogan, John; Zhang, Tingjun

    2014-06-01

    Wildfire is a major disturbance in the Arctic tundra and boreal forests, having a significant impact on soil hydrology, carbon cycling, and permafrost dynamics. This study explores the use of the microwave Interferometric Synthetic Aperture Radar (InSAR) technique to map and quantify ground surface subsidence caused by the Anaktuvuk River fire on the North Slope of Alaska. We detected an increase of up to 8 cm of thaw-season ground subsidence after the fire, which is due to a combination of thickened active layer and permafrost thaw subsidence. Our results illustrate the effectiveness and potential of using InSAR to quantify fire impacts on the Arctic tundra, especially in regions underlain by ice-rich permafrost. Our study also suggests that surface subsidence is a more comprehensive indicator of fire impacts on ice-rich permafrost terrain than changes in active layer thickness alone.

  2. [Methanotrophic communities in the soils of Russian northern taiga and subarctic tundra].

    PubMed

    Kaliuzhnaia, M G; Makutina, V A; Rusakova, T G; Nikitin, D V; Khmelenina, V N; Dmitriev, V V; Trotsenko, Iu A

    2002-01-01

    The PCR analysis of DNA extracted from soil samples taken in Russian northern taiga and subarctic tundra showed that the DNA extracts contain genes specific to methanotrophic bacteria, i.e., the mmoX gene encoding the conserved alpha-subunit of the hydroxylase component of soluble methane monooxygenase, the pmoA gene encoding the alpha-subunit of particulate methane monooxygenase, and the mxaF gene encoding the alpha-subunit of methanol dehydrogenase. PCR analysis with group-specific primers also showed that methanotrophic bacteria in the northern taiga and subarctic tundra soils are essentially represented by the type I genera Methylobacter, Methylomonas, Methylosphaera, and Methylomicrobium and that some soil samples contain type II methanotrophs close to members of the genera Methylosinus and Methylocystis. The electron microscopic examination of enrichment cultures obtained from the soil samples confirmed the presence of methanotrophic bacteria in the ecosystems studied and showed that the methanotrophs contain only small amounts of intracytoplasmic membranes.

  3. The modeled effects of fire on carbon balance and vegetation abundance in Alaskan tundra

    NASA Astrophysics Data System (ADS)

    Dietze, M. C.; Davidson, C. D.; Kelly, R.; Higuera, P. E.; Hu, F.

    2012-12-01

    Arctic climate is warming at a rate disproportionately faster than the rest of the world. Changes have been observed within the tundra that are attributed to this trend, including active layer thickening, shrub land expansion, and increases in fire frequency. Whether tundra remains a global net sink of carbon could depend upon the effects of fire on vegetation, specifically concerning the speed at which vegetation reestablishes, the stimulation of growth after fire, and the changes that occur in species composition during succession. While rapid regeneration of graminoid vegetation favors the spread of this functional type in early succession, late succession appears to favor shrub vegetation at abundances greater than those observed before fire. Possible reasons for this latter observation include changes in albedo, soil insulation, and soil moisture regimes. Here we investigate the course of succession after fire disturbance within tundra ecosystems, and the mechanisms involved. A series of simulated burn experiments were conducted on the burn site left by the 2007 Anaktuvuk River fire to access the behavior of the Ecosystem Demography model v2.2 (ED2) in the simulation of fire on the tundra. The land surface sub-model within ED is modified to improve simulate permafrost through the effects of an increased soil-column depth, a peat texture class, and the effects of wind compaction and depth hoar on snow density. Parameterization is conducted through Bayesian techniques used to constrain parameter distributions based upon data from a literature survey, field measurements at Toolik Lake, Alaska, and a data assimilation over three datasets. At each step, priority was assigned to measurements that could constrain parameters that account for the greatest explained variance in model output as determined through sensitivity analysis. Following parameterization, a series of simulations were performed to gauge the suitability of the model in predicting carbon balance and

  4. AmeriFlux US-ICt Imnavait Creek Watershed Tussock Tundra

    SciTech Connect

    Bret-Harte, Syndonia; Euskirchen, Eugenie; Shaver, Gaius

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-ICt Imnavait Creek Watershed Tussock Tundra. Site Description - The Imnavait Creek Watershed Tussock Tundra (Biocomplexity Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Biocomplexity Station was deployed in 2004, and it has been in operation during the melt seasons ever since.

  5. AmeriFlux US-ICh Imnavait Creek Watershed Heath Tundra

    SciTech Connect

    Bret-Harte, Syndonia; Euskirchen, Eugenie; Shaver, Gaius

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-ICh Imnavait Creek Watershed Heath Tundra. Site Description - The Imnavait Creek Watershed Heath Tundra (Ridge Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Ridge Station was deployed at the end of Summer 2007.

  6. AmeriFlux US-ICs Imnavait Creek Watershed Wet Sedge Tundra

    SciTech Connect

    Bret-Harte, Syndonia; Euskirchen, Eugenie; Shaver, Gaius

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-ICs Imnavait Creek Watershed Wet Sedge Tundra. Site Description - The Imnavait Creek Watershed Wet Sedge Tundra (Fen Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Fen Station was deployed at the end of Summer 2007.

  7. The 1977 tundra fire in the Kokolik River area of Alaska

    NASA Technical Reports Server (NTRS)

    1981-01-01

    Presumably caused by lightning, a large fire occurred due east of Point Lay several kilometers southwest of the Kokolik River, the farthest north a fire was ever fought by Bureau of Land Management personnel in Alaska. The progress and area extent of the fire were determined by analysis of LANDSAT MSS band 5 and 7 imagery. Low altitude observations from helicopter showed the fire burned a range of vegetation and relief types which included low polygonized and upland tussock tundras. The burned area appeared wetter on the surface than the unburned area, due to a lack of moisture absorbing organic matter and the possible release of moisture from the deeper thawed zone. Suggestions for future investigations of the effects of fire on tundra and permafrost terrains are discussed.

  8. Alaska tundra vegetation trends and their links to the large-scale climate

    NASA Astrophysics Data System (ADS)

    Bieniek, P. A.; Bhatt, U. S.; Walker, D. A.; Raynolds, M. K.; Comiso, J. C.

    2011-12-01

    The arctic Normalized Vegetation Index (NDVI) data set (a measure of vegetation photosynthetic capacity) has been used to document coherent temporal relationships between near-coastal sea ice, summer tundra land surface temperatures, and vegetation productivity throughout the Arctic (Bhatt et al. 2010). Land warming over North America has displayed larger trends (+30%) when compared to Eurasia (+16%) since 1982. In the tundra of northern Alaska the greatest change was found in absolute maximum NDVI along the Beaufort Sea coast (+14%). In contrast, tundra areas in southwest Alaska along the Bering Sea have seen a decline (-4%). Greenup date in these regions has been occurring as much as 1-4 days earlier per decade, but trends are mixed. Winter snow water equivalent (SWE) has only increased slightly (+0.1 mm/yr) in the Arctic region of Alaska since 1987 (R. Muskett, personal communication). These findings suggest that there have been changes in the seasonal climate in Alaska during the NDVI record. The tundra trends are further investigated by evaluating remotely sensed sea ice, surface air temperature, SWE, daily snow cover, and NDVI3g. While the snow data has a relatively short record (1999-2010), notable trends can be observed in snow melt, occurring as much 15 days earlier per decade in northern Alaska. Unfortunately, other snow data sets have been found to be problematic and could not be used to extend our analysis. This highlights the need for a long-term pan-arctic snow data set that is suitable for climate analysis. Possible climate drivers are also investigated. Results show that the summer tundra, in terms of NDVI and summer warmth index (SWI), has few direct links with the large-scale climate. However, the sea ice concentration along the coast of the tundra regions has strong preseason links to the large-scale climate. This suggests that the large-scale climate influences the sea ice concentration which then affects the NDVI and SWI. Three tundra regions

  9. Controls over nutrient flow through plants and microbes in Arctic tundra

    SciTech Connect

    Chapin, F.S. III.

    1991-01-01

    During 1990, we worked primarily on two major projects. The first was a field study of {sup 15}N partitioning between plants and microbes at Imnavait Creek. {sup 15}N was absorbed faster on the tundra than in temperate climates, and release of labeled nitrogen occurs much more slowly, indicating a slow turnover. The second major project was a model of nutrient uptake by {und Eriophorum vaginatum}. The major effort for 1991 will be on continued model development to match model predictions with results of current field work. Also scheduled for 1991 is completion of field work with {und E. vaginatum} and related soils. This should provide validation of the applicability of R4D concepts to anthropogenic disturbances in tundra. 5 figs. (MHB)

  10. Sequencing and analysis of the complete mitochondrial genome of tundra shrew (Sorex tundrensis) from China.

    PubMed

    Xu, Chunzhu; Zhao, Shuai; Wu, Hualin; Wu, Shengyang; Zhang, Zhongwen; Wang, Bo; Dou, Huashan

    2016-07-01

    The complete mitogenome sequence of tundra shrew (Sorex tundrensis) was determined using long PCR. The genome was 17,444 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 23 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (32.9%), C (24.8%), T (29.0%), and G (13.3%). The base compositions present clearly the A-T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of tundra shrew. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. The three Sorex species formed a monophyletic group with the high bootstrap value (100 %) in all examinations.

  11. InSAR detects increase in surface subsidence caused by an Arctic tundra fire

    USGS Publications Warehouse

    Liu, Lin; Jafarov, Elchin E.; Schaefer, Kevin M.; Jones, Benjamin M.; Zebker, Howard A.; Williams, Christopher A.; Rogan, John; Zhang, Tingjun

    2014-01-01

    Wildfire is a major disturbance in the Arctic tundra and boreal forests, having a significant impact on soil hydrology, carbon cycling, and permafrost dynamics. This study explores the use of the microwave Interferometric Synthetic Aperture Radar (InSAR) technique to map and quantify ground surface subsidence caused by the Anaktuvuk River fire on the North Slope of Alaska. We detected an increase of up to 8 cm of thaw-season ground subsidence after the fire, which is due to a combination of thickened active layer and permafrost thaw subsidence. Our results illustrate the effectiveness and potential of using InSAR to quantify fire impacts on the Arctic tundra, especially in regions underlain by ice-rich permafrost. Our study also suggests that surface subsidence is a more comprehensive indicator of fire impacts on ice-rich permafrost terrain than changes in active layer thickness alone.

  12. Species differences in whole plant carbon balance following winter dormancy in Alaskan tundra plants

    SciTech Connect

    Bret-Harte, M.S.; Chapin, F.S. III

    1995-09-01

    We froze ramets of seven vascular plant species and a mixed community of mosses common to upland tussock tundra for several months, then measured whole-plant photosynthesis and respiration in a growth chamber under simulated spring conditions, to examine whole plant carbon metabolism following winter dormancy. In addition, respiration and photosynthesis of aboveground stems and leaves were measured in the field in a spatial gradient away from a melting snowbank, at comparable developmental stages. Species differences in early respiration were not pronounced, but large differences were seen once development of leaves began. Root development in deciduous shrubs delayed their attainment of a positive whole plant carbon balance compared to that seen in aboveground stems and leaves alone, and partially compensated for differences in photosynthetic rates between shrubs and other species. Temporal patterns of carbon metabolism during spring growth may affect competitive balance in tussock tundra and vegetation response to global change.

  13. Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter.

    PubMed

    Kim, MyongChol; Pak, SeHong; Rim, SongGuk; Ren, Lvzhi; Jiang, Fan; Chang, Xulu; Liu, Ping; Zhang, Yumin; Fang, Chengxiang; Zheng, Congyi; Peng, Fang

    2015-06-01

    A pale yellow, Gram-reaction-negative, non-motile, aerobic bacterium, designated MC 3726T, was isolated from a tundra soil near Ny-Ålesund, Svalbard Archipelago, Norway (78 °N). Growth occurred at 4-37 °C (optimum 25-30 °C) and at pH 5.0-9.0 (optimum pH 8.0). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain MC 3726T belonged to the genus Luteolibacter in the family Verrucomicrobiaceae. The 16S rRNA gene sequence of this strain showed 93.18, 92.54 and 92.44 % similarity to those of Luteolibacter cuticulihirudinis E100T, Luteolibacter pohnpeiensis A4T-83T and Luteolibacter yonseiensis EBTL01T, respectively. The cell wall of strain MC 3726T contained meso-diaminopimelic acid as the diagnostic amino acid. Strain MC 3726T contained iso-C14:0 (38.28 %), C16:0 (15.89 %), C16:1ω9c (14.24 %), iso-C16:0 (10.42 %) and anteiso-C15:0 (5.75 %) as the predominant cellular fatty acids, MK-9 and MK-10 as the major respiratory quinones, and phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol and diphosphatidylglycerol as the main polar lipids. The DNA G+C content was 60.7 mol %. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain MC 3726T is considered to represent a novel species of the genus Luteolibacter, for which the name Luteolibacter arcticus sp. nov. is proposed. The type strain is MC 3726T ( = CCTCC AB 2014275T = LMG 28638T). An emended description of the genus Luteolibacter is also provided, along with emended descriptions of Luteolibacter cuticulihirudinis, Luteolibacter yonseiensis and Luteolibacter pohnpeiensis.

  14. Fast releasing oral electrospun PVP/CD nanofiber mats of taste-masked meloxicam.

    PubMed

    Samprasit, Wipada; Akkaramongkolporn, Prasert; Ngawhirunpat, Tanasait; Rojanarata, Theerasak; Kaomongkolgit, Ruchadaporn; Opanasopit, Praneet

    2015-06-20

    Fast release and taste masking of meloxicam (MX)-loaded polyvinylpyrrolidone (PVP)/cyclodextrin (CD) nanofiber mats were developed using an electrospinning process. CDs were blended to improve the stability of the mats. The morphology and diameter of the mats were determined using scanning electron microscopy (SEM); physical and mechanical properties were also studied. The MX content, disintegration time, MX release and cytotoxicity of the mats were investigated. In vivo studies were also performed in healthy human volunteers. The results indicated that the mats were successfully prepared with fiber in the nanometer range. MX was well incorporated into the mats, with an amorphous form. The mats showed suitable tensile strength. CDs improved the physical stability by their cage-like supramolecular structure to protect from humidity and moisture, and create bead free nanofiber mats. The nanofiber mats with CDs were physically stable without any hygroscopicity and fusion. A fast disintegration and release of MX was achieved. Moreover, this mat released MX faster than the MX powder and commercial tablets. The cytotoxicity test revealed that mats were safe for a 5-min incubation. The disintegration studies indicated that in vivo disintegration agreed with the in vitro studies; the mat rapidly disintegrated in the mouth. The less bitter of MX was occurred in the mats that incorporated CD, menthol and aspartame. In addition, this mat was physical stable for 6 months. The results suggest that these mats may be a good candidate for fast dissolving drug delivery systems of bitter drugs to increase the palatability of dosage forms.

  15. Diel Migrations of Microorganisms within a Benthic, Hypersaline Mat Community

    PubMed Central

    Garcia-Pichel, Ferran; Mechling, Margaret; Castenholz, Richard W.

    1994-01-01

    We studied the diel migrations of several species of microorganisms in a hypersaline, layered microbial mat. The migrations were quantified by repeated coring of the mat with glass capillary tubes. The resulting minicores were microscopically analyzed by using bright-field and epifluorescence (visible and infrared) microscopy to determine depths of coherent layers and were later dissected to determine direct microscopic counts of microorganisms. Microelectrode measurements of oxygen concentration, fiber optic microprobe measurements of light penetration within the mat, and incident irradiance measurements accompanied the minicore sampling. In addition, pigment content, photosynthesis and irradiance responses, the capacity for anoxygenic photosynthesis, and gliding speeds were determined for the migrating cyanobacteria. Heavily pigmented Oscillatoria sp. and Spirulina cf. subsalsa migrated downward into the mat during the early morning and remained deep until dusk, when upward migration occurred. The mean depth of the migration (not more than 0.4 to 0.5 mm) was directly correlated with the incident irradiance over the mat surface. We estimated that light intensity at the upper boundary of the migrating cyanobacteria was attenuated to such an extent that photoinhibition was effectively avoided but that intensities which saturated photosynthesis were maintained through most of the daylight hours. Light was a cue of paramount importance in triggering and modulating the migration of the cyanobacteria, even though the migrating phenomenon could not be explained solely in terms of a light response. We failed to detect diel migration patterns for other cyanobacterial species and filamentous anoxyphotobacteria. The sulfide-oxidizing bacterium Beggiatoa sp. migrated as a band that followed low oxygen concentrations within the mat during daylight hours. During the nighttime, part of this population migrated toward the mat surface, but a significant proportion remained deep

  16. CO2 flux from tundra lichen, moss, and tussock, Council, Alaska: Assessment of spatial representativeness

    NASA Astrophysics Data System (ADS)

    Kim, Y.; Chae, N.

    2012-12-01

    CO2 flux-measurement in dominant tundra vegetation on the Seward Peninsula of Alaska was examined for spatial representativeness, using a manual chamber system. In order to assess the representativeness of CO2 flux, a 40 m × 40 m (5-m interval; 81 total points) plot was used in June, August, and September of 2011. Average CO2 fluxes in lichen, moss, and tussock tundra were 3.4 ± 2.7, 4.5 ± 2.9, and 7.2 ± 5.7 mgCO2/m2/m during growing season, respectively, suggesting that tussock tundra is a significant CO2 source, especially considering the wide distribution of tussock tundra in the circumpolar region. Further, soil temperature, rather than soil moisture, held the key role in regulating CO2 flux at the study site: CO2 flux from tussock increased linearly as soil temperature increased, while the flux from lichen and moss followed soil temperature nearly exponentially, reflecting differences in surface area covered by the chamber system. Regarding sample size, the 81 total sampling points over June, August, and September satisfy an experimental average that falls within ±10% of full sample average, with a 95% confidence level. However, the number of sampling points for each variety of vegetation during each month must provide at least ±20%, with an 80% confidence level. In order to overcome the logistical constraints, we were required to identify the site's characteristics with a manual chamber system over a 40 m × 40 m plot and to subsequently employ an automated chamber for spatiotemporal representativeness.

  17. Herbivore Impact on Tundra Plant Community Dynamics Using Long-term Remote Sensing Observation

    NASA Astrophysics Data System (ADS)

    Yu, Q.; Engstrom, R.; Shiklomanov, N. I.

    2014-12-01

    Arctic tundra biome is now experiencing dramatic environmental changes accentuated by summer sea-ice decline, permafrost thaw, and shrub expansion. Multi-decadal time-series of the Normalized Difference Vegetation Index (NDVI, a spectral metric of vegetation productivity) shows an overall "greening" trend across the Arctic tundra biome. Regional trends in climate plausibly explain large-scale patterns of increasing plant productivity, as diminished summer sea-ice extent warms the adjacent land causing tundra vegetation to respond positively (increased photosynthetic aboveground biomass). However, at more local scales, there is a great deal of spatial variability in NDVI trends that likely reflects differences in hydrology and soil conditions, disturbance history, and use by wildlife and humans. Particularly, habitat use by large herbivores, such as reindeer and caribou, has large impacts on vegetation dynamics at local and regional scales, but the role of herbivores in modulating the response of vegetation to warming climate has received little attention. This study investigates regional tundra plant community dynamics within inhabits of different sizes of wild caribou/reindeer herds across the Arctic using GIMMS NDVI (Normalized Difference Vegetation Index) 3g data product. The Taimyr herd in Russia is one of the largest herds in the world with a population increase from 450,000 in 1975 to about 1 million animals in 2000. The population of the porcupine caribou herd has fluctuated in the past three decades between 100,000 and 180,000. Time-series of the maximum NDVI within the inhabit area of the Taimyr herd has increased about 2% per decade over the past three decades, while within the inhabit area of the Porcupine herd the maximum NDVI has increased about 5% per decade. Our results indicate that the impact of large herbivores can be detected from space and further analyses on seasonal dynamics of vegetation indices and herbivore behavior may provide more

  18. Blood lead concentrations in Alaskan tundra swans: linking breeding and wintering areas with satellite telemetry

    USGS Publications Warehouse

    Ely, Craig R.; Franson, Christian

    2014-01-01

    Tundra swans (Cygnus columbianus) like many waterfowl species are susceptible to lead (Pb) poisoning, and Pb-induced mortality has been reported from many areas of their wintering range. Little is known however about Pb levels throughout the annual cycle of tundra swans, especially during summer when birds are on remote northern breeding areas where they are less likely to be exposed to anthropogenic sources of Pb. Our objective was to document summer Pb levels in tundra swans throughout their breeding range in Alaska to determine if there were population-specific differences in blood Pb concentrations that might pose a threat to swans and to humans that may consume them. We measured blood Pb concentrations in tundra swans at five locations in Alaska, representing birds that winter in both the Pacific Flyway and Atlantic Flyway. We also marked swans at each location with satellite transmitters and coded neck bands, to identify staging and wintering sites and determine if winter site use correlated with summer Pb concentrations. Blood Pb levels were generally low (<0.2 μg/ml) in swans across all breeding areas. Pb levels were lower in cygnets than adults, suggesting that swans were likely exposed to Pb on wintering areas or on return migration to Alaska, rather than on the summer breeding grounds. Blood Pb levels varied significantly across the five breeding areas, with highest concentrations in birds on the North Slope of Alaska (wintering in the Atlantic Flyway), and lowest in birds from the lower Alaska Peninsula that rarely migrate south for winter.

  19. Blood lead concentrations in Alaskan tundra swans: linking breeding and wintering areas with satellite telemetry.

    PubMed

    Ely, Craig R; Franson, J Christian

    2014-04-01

    Tundra swans (Cygnus columbianus) like many waterfowl species are susceptible to lead (Pb) poisoning, and Pb-induced mortality has been reported from many areas of their wintering range. Little is known however about Pb levels throughout the annual cycle of tundra swans, especially during summer when birds are on remote northern breeding areas where they are less likely to be exposed to anthropogenic sources of Pb. Our objective was to document summer Pb levels in tundra swans throughout their breeding range in Alaska to determine if there were population-specific differences in blood Pb concentrations that might pose a threat to swans and to humans that may consume them. We measured blood Pb concentrations in tundra swans at five locations in Alaska, representing birds that winter in both the Pacific Flyway and Atlantic Flyway. We also marked swans at each location with satellite transmitters and coded neck bands, to identify staging and wintering sites and determine if winter site use correlated with summer Pb concentrations. Blood Pb levels were generally low (<0.2 μg/ml) in swans across all breeding areas. Pb levels were lower in cygnets than adults, suggesting that swans were likely exposed to Pb on wintering areas or on return migration to Alaska, rather than on the summer breeding grounds. Blood Pb levels varied significantly across the five breeding areas, with highest concentrations in birds on the North Slope of Alaska (wintering in the Atlantic Flyway), and lowest in birds from the lower Alaska Peninsula that rarely migrate south for winter.

  20. Long-term persistence of spent lead shot in tundra wetlands

    USGS Publications Warehouse

    Flint, Paul L.; Schamber, Jason L.

    2010-01-01

    We seeded experimental plots with number 4 lead pellets and sampled these plots for 10 years to assess the settlement rate of pellets in tundra wetland types commonly used by foraging waterfowl. After 10 years, about 10% of pellets remained within 6 cm of the surface, but >50% remained within 10 cm. We predict that spent lead pellets will eventually become unavailable to waterfowl; however, it will likely require >25 years for all pellets to exceed depths at which waterfowl species may forage.

  1. Estimated storage of amorphous silica in soils of the circum-Arctic tundra region

    NASA Astrophysics Data System (ADS)

    Alfredsson, H.; Clymans, W.; Hugelius, G.; Kuhry, P.; Conley, D. J.

    2016-03-01

    We investigated the vertical distribution, storage, landscape partitioning, and spatial variability of soil amorphous silica (ASi) at four different sites underlain by continuous permafrost and representative of mountainous and lowland tundra, in the circum-Arctic region. Based on a larger set of data, we present the first estimate of the ASi soil reservoir (0-1 m depth) in circum-Arctic tundra terrain. At all sites, the vertical distribution of ASi concentrations followed the pattern of either (1) declining concentrations with depth (most common) or (2) increasing/maximum concentrations with depth. Our results suggest that a set of processes, including biological control, solifluction and other slope processes, cryoturbation, and formation of inorganic precipitates influence vertical distributions of ASi in permafrost terrain, with the capacity to retain stored ASi on millennial timescales. At the four study sites, areal ASi storage (0-1 m) is generally higher in graminoid tundra compared to wetlands. Our circum-Arctic upscaling estimates, based on both vegetation and soil classification separately, suggest a storage amounting to 219 ± 28 and 274 ± 33 Tmol Si, respectively, of which at least 30% is stored in permafrost. This estimate would account for about 3% of the global soil ASi storage while occupying an equal portion of the global land area. This result does not support the hypothesis that the circum-Arctic tundra soil ASi reservoir contains relatively higher amounts of ASi than other biomes globally as demonstrated for carbon. Nevertheless, climate warming has the potential to significantly alter ASi storage and terrestrial Si cycling in the Arctic.

  2. Controls over nutrient flow through plants and microbes in arctic tundra

    SciTech Connect

    Schimel, J.P.

    1990-01-01

    Plant growth in arctic tundra is generally strongly limited by nutrient availability, particularly by nitrogen. The purpose of this sub-project of the R4D program was to examine plant N-uptake and the competition for N between plants and microbes in tundra. This competition can be an important control on N-flow and plant uptake but its significance in tundra has not been studied intensively. How the factors controlling the outcome of competition are altered by disturbance has also received very limited study, yet this is important facet of the R4D program. The primary goal for this project in 1990 was to initiate studies on N-partitioning and turnover in tussock tundra and how this is affected by dust deposition. Secondary goals were to examine the effect of differential dust deposition on microbial activity and nutrient cycling processes (mineralization and nitrification), and begin studies on the control of microbial N-uptake. The N-partitioning studies used {sup 15}N injected into Eriophorum tussocks to examine both the short-term (1 day) partitioning of N and the long-term (1 month and 1 year) redistribution of N through the plant-soil system. These experiments were done in both the early season (June) and peak season (July). To examine the effect of dust on N-partitioning tussocks in the heavy dust zone and in a control site were labeled with {sup 15}N and harvested at the end of the growing season. 4 refs., 1 tab.

  3. Winter and early spring CO2 efflux from tundra communities of northern Alaska

    USGS Publications Warehouse

    Fahnestock, J.T.; Jones, M.H.; Brooks, P.D.; Walker, D. A.; Welker, J.M.

    1998-01-01

    Carbon dioxide concentrations through snow were measured in different arctic tundra communities on the North Slope of Alaska during winter and early spring of 1996. Subnivean CO2 concentrations were always higher than atmospheric CO2. A steady state diffusion model was used to generate conservative estimates of CO2 flux to the atmosphere. The magnitude of CO2 efflux differed with tundra community type, and rates of carbon release increased from March to May. Winter CO2 efflux was highest in riparian and snow bed communities and lowest in dry heath, upland tussock, and wet sedge communities. Snow generally accrues earlier in winter and is deeper in riparian and snow bed communities compared with other tundra communities, which are typically windswept and do not accumulate much snow during the winter. These results support the hypothesis that early and deep snow accumulation may insulate microbial populations from very cold temperatures, allowing sites with earlier snow cover to sustain higher levels of activity throughout winter compared to communities that have later developing snow cover. Extrapolating our estimates of CO2 efflux to the entire snow-covered season indicates that total carbon flux during winter in the Arctic is 13-109 kg CO2-C ha-1, depending on the vegetation community type. Wintertime CO2 flux is a potentially important, yet largely overlooked, part of the annual carbon cycle of tundra, and carbon release during winter should be accounted for in estimates of annual carbon balance in arctic ecosystems. Copyright 1998 by the American Geophysical Union.

  4. Bird Communities of the Arctic Shrub Tundra of Yamal: Habitat Specialists and Generalists

    PubMed Central

    Sokolov, Vasiliy; Ehrich, Dorothée; Yoccoz, Nigel G.; Sokolov, Alexander; Lecomte, Nicolas

    2012-01-01

    Background The ratio of habitat generalists to specialists in birds has been suggested as a good indicator of ecosystem changes due to e.g. climate change and other anthropogenic perturbations. Most studies focusing on this functional component of biodiversity originate, however, from temperate regions. The Eurasian Arctic tundra is currently experiencing an unprecedented combination of climate change, change in grazing pressure by domestic reindeer and growing human activity. Methodology/Principal Findings Here we monitored bird communities in a tundra landscape harbouring shrub and open habitats in order to analyse bird habitat relationships and quantify habitat specialization. We used ordination methods to analyse habitat associations and estimated the proportions of specialists in each of the main habitats. Correspondence Analysis identified three main bird communities, inhabiting upland, lowland and dense willow shrubs. We documented a stable structure of communities despite large multiannual variations of bird density (from 90 to 175 pairs/km2). Willow shrub thickets were a hotspot for bird density, but not for species richness. The thickets hosted many specialized species whose main distribution area was south of the tundra. Conclusion/Significance If current arctic changes result in a shrubification of the landscape as many studies suggested, we would expect an increase in the overall bird abundance together with an increase of local specialists, since they are associated with willow thickets. The majority of these species have a southern origin and their increase in abundance would represent a strengthening of the boreal component in the southern tundra, perhaps at the expense of species typical of the subarctic zone, which appear to be generalists within this zone. PMID:23239978

  5. Methane and nitrous oxide fluxes from four tundra ecotopes in Ny-Ålesund of the High Arctic.

    PubMed

    Chen, Qingqing; Zhu, Renbin; Wang, Qing; Xu, Hua

    2014-07-01

    During the summers of 2008 and 2009, net methane (CH₄) and nitrous oxide (N₂O) fluxes were investigated from 4 tundra ecotopes: normal lowland tundra (LT), bird sanctuary tundra (BT), the tundra in an abandoned coal mine (CT) and the tundra in scientific bases (ST) in Ny-Ålesund of the High Arctic. Tundra soils in CT (184.5 ± 40.0 μg CH4/(m²·hr)) and ST (367.6 ± 92.3μg CH4/(m²·hr)) showed high CH4 emissions due to the effects of human activities, whereas high CH4 uptake or low emission occurred in the soils of LT and BT. The lowland tundra soils (mean, -4.4-4.3μg N₂O/(m²·hr)) were weak N₂O sources and even sinks. Bird activity increased N₂O emissions from BT with the mean flux of 7.9μgN2O/(m(2)·hr). The mean N₂O fluxes from CT (45.4 ± 10.2 μg N₂O/(m²·hr)) and ST (78.8 ± 18.5μg N₂O/(m²·hr)) were one order of magnitude higher than those from LT and BT, indicating that human activities significantly increased N₂O emissions from tundra soils. Soil total carbon and water regime were important factors affecting CH₄ fluxes from tundra soils. The N₂O fluxes showed a significant positive correlation with ammonia nitrogen (NH₄(+)-N) contents (r=0.66, p<0.001) at all the observation sites, indicating that ammonia nitrogen (NH₄(+)-N) content acted as a strong predictor for N₂O emissions from tundra soils. The CH4 and N₂O fluxes did not correspond to the temperature variations of soil at 0-15 cm depths. Overall our results implied that human activities might have greater effects on soil CH₄ and N₂O emissions than current climate warming in Ny-Ålesund, High Arctic.

  6. Methane and nitrous oxide fluxes from four tundra ecotopes in Ny-Ålesund of the High Arctic.

    PubMed

    Chen, Qingqing; Zhu, Renbin; Wang, Qing; Xu, Hua

    2014-07-01

    During the summers of 2008 and 2009, net methane (CH₄) and nitrous oxide (N₂O) fluxes were investigated from 4 tundra ecotopes: normal lowland tundra (LT), bird sanctuary tundra (BT), the tundra in an abandoned coal mine (CT) and the tundra in scientific bases (ST) in Ny-Ålesund of the High Arctic. Tundra soils in CT (184.5 ± 40.0 μg CH4/(m²·hr)) and ST (367.6 ± 92.3μg CH4/(m²·hr)) showed high CH4 emissions due to the effects of human activities, whereas high CH4 uptake or low emission occurred in the soils of LT and BT. The lowland tundra soils (mean, -4.4-4.3μg N₂O/(m²·hr)) were weak N₂O sources and even sinks. Bird activity increased N₂O emissions from BT with the mean flux of 7.9μgN2O/(m(2)·hr). The mean N₂O fluxes from CT (45.4 ± 10.2 μg N₂O/(m²·hr)) and ST (78.8 ± 18.5μg N₂O/(m²·hr)) were one order of magnitude higher than those from LT and BT, indicating that human activities significantly increased N₂O emissions from tundra soils. Soil total carbon and water regime were important factors affecting CH₄ fluxes from tundra soils. The N₂O fluxes showed a significant positive correlation with ammonia nitrogen (NH₄(+)-N) contents (r=0.66, p<0.001) at all the observation sites, indicating that ammonia nitrogen (NH₄(+)-N) content acted as a strong predictor for N₂O emissions from tundra soils. The CH4 and N₂O fluxes did not correspond to the temperature variations of soil at 0-15 cm depths. Overall our results implied that human activities might have greater effects on soil CH₄ and N₂O emissions than current climate warming in Ny-Ålesund, High Arctic. PMID:25079988

  7. Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

    NASA Astrophysics Data System (ADS)

    Xue, Kai; M. Yuan, Mengting; J. Shi, Zhou; Qin, Yujia; Deng, Ye; Cheng, Lei; Wu, Liyou; He, Zhili; van Nostrand, Joy D.; Bracho, Rosvel; Natali, Susan; Schuur, Edward. A. G.; Luo, Chengwei; Konstantinidis, Konstantinos T.; Wang, Qiong; Cole, James R.; Tiedje, James M.; Luo, Yiqi; Zhou, Jizhong

    2016-06-01

    Microbial decomposition of soil carbon in high-latitude tundra underlain with permafrost is one of the most important, but poorly understood, potential positive feedbacks of greenhouse gas emissions from terrestrial ecosystems into the atmosphere in a warmer world. Using integrated metagenomic technologies, we showed that the microbial functional community structure in the active layer of tundra soil was significantly altered after only 1.5 years of warming, a rapid response demonstrating the high sensitivity of this ecosystem to warming. The abundances of microbial functional genes involved in both aerobic and anaerobic carbon decomposition were also markedly increased by this short-term warming. Consistent with this, ecosystem respiration (Reco) increased up to 38%. In addition, warming enhanced genes involved in nutrient cycling, which very likely contributed to an observed increase (30%) in gross primary productivity (GPP). However, the GPP increase did not offset the extra Reco, resulting in significantly more net carbon loss in warmed plots compared with control plots. Altogether, our results demonstrate the vulnerability of active-layer soil carbon in this permafrost-based tundra ecosystem to climate warming and the importance of microbial communities in mediating such vulnerability.

  8. Microbial diversity in alpine tundra soils correlates with snow cover dynamics.

    PubMed

    Zinger, Lucie; Shahnavaz, Bahar; Baptist, Florence; Geremia, Roberto A; Choler, Philippe

    2009-07-01

    The temporal and spatial snow cover dynamics is the primary factor controlling the plant communities' composition and biogeochemical cycles in arctic and alpine tundra. However, the relationships between the distribution of snow and the diversity of soil microbial communities remain largely unexplored. Over a period of 2 years, we monitored soil microbial communities at three sites, including contiguous alpine meadows of late and early snowmelt locations (LSM and ESM, respectively). Bacterial and fungal communities were characterized by using molecular fingerprinting and cloning/sequencing of microbial ribosomal DNA extracted from the soil. Herein, we show that the spatial and temporal distribution of snow strongly correlates with microbial community composition. High seasonal contrast in ESM is associated with marked seasonal shifts for bacterial communities; whereas less contrasted seasons because of long-lasting snowpack in LSM is associated with increased fungal diversity. Finally, our results indicate that, similar to plant communities, microbial communities exhibit important shifts in composition at two extremes of the snow cover gradient. However, winter conditions lead to the convergence of microbial communities independently of snow cover presence. This study provides new insights into the distribution of microbial communities in alpine tundra in relation to snow cover dynamics, and may be helpful in predicting the future of microbial communities and biogeochemical cycles in arctic and alpine tundra in the context of a warmer climate.

  9. The response of Arctic vegetation and soils following an unusually severe tundra fire

    PubMed Central

    Bret-Harte, M. Syndonia; Mack, Michelle C.; Shaver, Gaius R.; Huebner, Diane C.; Johnston, Miriam; Mojica, Camilo A.; Pizano, Camila; Reiskind, Julia A.

    2013-01-01

    Fire causes dramatic short-term changes in vegetation and ecosystem function, and may promote rapid vegetation change by creating recruitment opportunities. Climate warming likely will increase the frequency of wildfire in the Arctic, where it is not common now. In 2007, the unusually severe Anaktuvuk River fire burned 1039 km2 of tundra on Alaska's North Slope. Four years later, we harvested plant biomass and soils across a gradient of burn severity, to assess recovery. In burned areas, above-ground net primary productivity of vascular plants equalled that in unburned areas, though total live biomass was less. Graminoid biomass had recovered to unburned levels, but shrubs had not. Virtually all vascular plant biomass had resprouted from surviving underground parts; no non-native species were seen. However, bryophytes were mostly disturbance-adapted species, and non-vascular biomass had recovered less than vascular plant biomass. Soil nitrogen availability did not differ between burned and unburned sites. Graminoids showed allocation changes consistent with nitrogen stress. These patterns are similar to those seen following other, smaller tundra fires. Soil nitrogen limitation and the persistence of resprouters will likely lead to recovery of mixed shrub–sedge tussock tundra, unless permafrost thaws, as climate warms, more extensively than has yet occurred. PMID:23836794

  10. Remote sensing of vegetation and land-cover change in Arctic Tundra Ecosystems

    USGS Publications Warehouse

    Stow, D.A.; Hope, A.; McGuire, D.; Verbyla, D.; Gamon, J.; Huemmrich, F.; Houston, S.; Racine, C.; Sturm, M.; Tape, K.; Hinzman, L.; Yoshikawa, K.; Tweedie, C.; Noyle, B.; Silapaswan, C.; Douglas, D.; Griffith, B.; Jia, G.; Epstein, H.; Walker, D.; Daeschner, S.; Petersen, A.; Zhou, L.; Myneni, R.

    2004-01-01

    The objective of this paper is to review research conducted over the past decade on the application of multi-temporal remote sensing for monitoring changes of Arctic tundra lands. Emphasis is placed on results from the National Science Foundation Land-Air-Ice Interactions (LAII) program and on optical remote sensing techniques. Case studies demonstrate that ground-level sensors on stationary or moving track platforms and wide-swath imaging sensors on polar orbiting satellites are particularly useful for capturing optical remote sensing data at sufficient frequency to study tundra vegetation dynamics and changes for the cloud prone Arctic. Less frequent imaging with high spatial resolution instruments on aircraft and lower orbiting satellites enable more detailed analyses of land cover change and calibration/validation of coarser resolution observations. The strongest signals of ecosystem change detected thus far appear to correspond to expansion of tundra shrubs and changes in the amount and extent of