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Sample records for activate large numbers

  1. Estimating Large Numbers

    ERIC Educational Resources Information Center

    Landy, David; Silbert, Noah; Goldin, Aleah

    2013-01-01

    Despite their importance in public discourse, numbers in the range of 1 million to 1 trillion are notoriously difficult to understand. We examine magnitude estimation by adult Americans when placing large numbers on a number line and when qualitatively evaluating descriptions of imaginary geopolitical scenarios. Prior theoretical conceptions…

  2. Numbers Defy the Law of Large Numbers

    ERIC Educational Resources Information Center

    Falk, Ruma; Lann, Avital Lavie

    2015-01-01

    As the number of independent tosses of a fair coin grows, the rates of heads and tails tend to equality. This is misinterpreted by many students as being true also for the absolute numbers of the two outcomes, which, conversely, depart unboundedly from each other in the process. Eradicating that misconception, as by coin-tossing experiments,…

  3. Product-selective blot: a technique for measuring enzyme activities in large numbers of samples and in native electrophoresis gels

    SciTech Connect

    Thompson, G.A.; Davies, H.M.; McDonald, N.

    1985-08-01

    A method termed product-selective blotting has been developed for screening large numbers of samples for enzyme activity. The technique is particularly well suited to detection of enzymes in native electrophoresis gels. The principle of the method was demonstrated by blotting samples from glutaminase or glutamate synthase reactions into an agarose gel embedded with ion-exchange resin under conditions favoring binding of product (glutamate) over substrates and other substances in the reaction mixture. After washes to remove these unbound substances, the product was measured using either fluorometric staining or radiometric techniques. Glutaminase activity in native electrophoresis gels was visualized by a related procedure in which substrates and products from reactions run in the electrophoresis gel were blotted directly into a resin-containing image gel. Considering the selective-binding materials available for use in the image gel, along with the possible detection systems, this method has potentially broad application.

  4. A Very Large Number of GABAergic Neurons Are Activated in the Tuberal Hypothalamus during Paradoxical (REM) Sleep Hypersomnia

    PubMed Central

    Sapin, Emilie; Bérod, Anne; Léger, Lucienne; Herman, Paul A.; Luppi, Pierre-Hervé; Peyron, Christelle

    2010-01-01

    We recently discovered, using Fos immunostaining, that the tuberal and mammillary hypothalamus contain a massive population of neurons specifically activated during paradoxical sleep (PS) hypersomnia. We further showed that some of the activated neurons of the tuberal hypothalamus express the melanin concentrating hormone (MCH) neuropeptide and that icv injection of MCH induces a strong increase in PS quantity. However, the chemical nature of the majority of the neurons activated during PS had not been characterized. To determine whether these neurons are GABAergic, we combined in situ hybridization of GAD67 mRNA with immunohistochemical detection of Fos in control, PS deprived and PS hypersomniac rats. We found that 74% of the very large population of Fos-labeled neurons located in the tuberal hypothalamus after PS hypersomnia were GAD-positive. We further demonstrated combining MCH immunohistochemistry and GAD67 in situ hybridization that 85% of the MCH neurons were also GAD-positive. Finally, based on the number of Fos-ir/GAD+, Fos-ir/MCH+, and GAD+/MCH+ double-labeled neurons counted from three sets of double-staining, we uncovered that around 80% of the large number of the Fos-ir/GAD+ neurons located in the tuberal hypothalamus after PS hypersomnia do not contain MCH. Based on these and previous results, we propose that the non-MCH Fos/GABAergic neuronal population could be involved in PS induction and maintenance while the Fos/MCH/GABAergic neurons could be involved in the homeostatic regulation of PS. Further investigations will be needed to corroborate this original hypothesis. PMID:20668680

  5. Reading the World through Very Large Numbers

    ERIC Educational Resources Information Center

    Greer, Brian; Mukhopadhyay, Swapna

    2010-01-01

    One original, and continuing, source of interest in large numbers is observation of the natural world, such as trying to count the stars on a clear night or contemplation of the number of grains of sand on the seashore. Indeed, a search of the internet quickly reveals many discussions of the relative numbers of stars and grains of sand. Big…

  6. Insights into Our Understandings of Large Numbers

    ERIC Educational Resources Information Center

    Kastberg, Signe E.; Walker, Vicki

    2008-01-01

    This article explores prospective teachers' understandings of one million to gain insights into the development of adult understanding of large numbers. Themes in the prospective teachers' work included number associated with a quantity of objects, number as an abstraction, and additive and multiplicative approaches. The authors suggest that the…

  7. Tutoring Large Numbers: An Unmet Challenge

    ERIC Educational Resources Information Center

    Lentell, Helen; O'Rourke, Jennifer

    2004-01-01

    Open and distance learning (ODL) is increasingly being regarded as a viable policy option for developing countries with limited educational resources for buildings, books and trained teachers, seeking to increase accessibility for large numbers of learners in education and training opportunities. Advocates of ODL as an appropriate solution to…

  8. Large numbers hypothesis. I - Classical formalism

    NASA Technical Reports Server (NTRS)

    Adams, P. J.

    1982-01-01

    A self-consistent formulation of physics at the classical level embodying Dirac's large numbers hypothesis (LNH) is developed based on units covariance. A scalar 'field' phi(x) is introduced and some fundamental results are derived from the resultant equations. Some unusual properties of phi are noted such as the fact that phi cannot be the correspondence limit of a normal quantum scalar field.

  9. Large numbers hypothesis. II - Electromagnetic radiation

    NASA Technical Reports Server (NTRS)

    Adams, P. J.

    1983-01-01

    This paper develops the theory of electromagnetic radiation in the units covariant formalism incorporating Dirac's large numbers hypothesis (LNH). A direct field-to-particle technique is used to obtain the photon propagation equation which explicitly involves the photon replication rate. This replication rate is fixed uniquely by requiring that the form of a free-photon distribution function be preserved, as required by the 2.7 K cosmic radiation. One finds that with this particular photon replication rate the units covariant formalism developed in Paper I actually predicts that the ratio of photon number to proton number in the universe varies as t to the 1/4, precisely in accord with LNH. The cosmological red-shift law is also derived and it is shown to differ considerably from the standard form of (nu)(R) - const.

  10. Forecasting distribution of numbers of large fires

    USGS Publications Warehouse

    Eidenshink, Jeffery C.; Preisler, Haiganoush K.; Howard, Stephen; Burgan, Robert E.

    2014-01-01

    Systems to estimate forest fire potential commonly utilize one or more indexes that relate to expected fire behavior; however they indicate neither the chance that a large fire will occur, nor the expected number of large fires. That is, they do not quantify the probabilistic nature of fire danger. In this work we use large fire occurrence information from the Monitoring Trends in Burn Severity project, and satellite and surface observations of fuel conditions in the form of the Fire Potential Index, to estimate two aspects of fire danger: 1) the probability that a 1 acre ignition will result in a 100+ acre fire, and 2) the probabilities of having at least 1, 2, 3, or 4 large fires within a Predictive Services Area in the forthcoming week. These statistical processes are the main thrust of the paper and are used to produce two daily national forecasts that are available from the U.S. Geological Survey, Earth Resources Observation and Science Center and via the Wildland Fire Assessment System. A validation study of our forecasts for the 2013 fire season demonstrated good agreement between observed and forecasted values.

  11. A Large number of fast cosmological simulations

    NASA Astrophysics Data System (ADS)

    Koda, Jun; Kazin, E.; Blake, C.

    2014-01-01

    Mock galaxy catalogs are essential tools to analyze large-scale structure data. Many independent realizations of mock catalogs are necessary to evaluate the uncertainties in the measurements. We perform 3600 cosmological simulations for the WiggleZ Dark Energy Survey to obtain the new improved Baron Acoustic Oscillation (BAO) cosmic distance measurements using the density field "reconstruction" technique. We use 1296^3 particles in a periodic box of 600/h Mpc on a side, which is the minimum requirement from the survey volume and observed galaxies. In order to perform such large number of simulations, we developed a parallel code using the COmoving Lagrangian Acceleration (COLA) method, which can simulate cosmological large-scale structure reasonably well with only 10 time steps. Our simulation is more than 100 times faster than conventional N-body simulations; one COLA simulation takes only 15 minutes with 216 computing cores. We have completed the 3600 simulations with a reasonable computation time of 200k core hours. We also present the results of the revised WiggleZ BAO distance measurement, which are significantly improved by the reconstruction technique.

  12. [International migration: small numbers, large challenges].

    PubMed

    Garcia Y Griego, M

    1988-01-01

    Mexican immigration into the United States during the period of 1850-1980 is analyzed relying on census data. In the late 1800's immigrants worked on railway construction and on farms in the central and northern plains, but they numbered only 68,000 in 1880. Between 1900-1930 their numbers exploded from 103,000 to close to 1 million due to the demand for agricultural laborers in California and Texas. The Great Depression saw en masse repatriation, by 1940 their numbers dwindled to 377,000, and it was not until the 60's that a resurgence started. By 1970 their number was 789,000, and the corrected 1980 census figure puts their number at 2,531,000 of which 1.1 million were illegals. Most were males 15-44 years old. Mexicans born outside Mexico were only 269,000 in 1980, a figure slightly higher than Mexicans registered in the U.S. in 1910. North Americans and Spanish have been the most numerous immigrants into Mexico since the 19th century, but in recent years a massive immigration from Central America has occurred as a result of political turmoil and war. Mexican immigration into the U.S. served as a safety valve for the economy and it has been compared to other demographic phenomena such as births and deaths. The legalization of immigrants in 1986 under a U.S. law has significantly dissipated a constant source of friction with the U.S.

  13. Antioxidant properties of the essential oil of Eugenia caryophyllata and its antifungal activity against a large number of clinical Candida species.

    PubMed

    Chaieb, Kamel; Zmantar, Tarek; Ksouri, Riadh; Hajlaoui, Hafedh; Mahdouani, Kacem; Abdelly, Chedly; Bakhrouf, Amina

    2007-09-01

    Many essential oils are known to possess an antioxidant activity and antifungal properties and therefore they potentially act as antimycotic agents. Essential oil of clove (Eugenia caryophyllata) was isolated by hydrodistillation. The chemical composition of the essential oil was analysed by gas chromatography and gas chromatography/mass spectroscopy. The antioxidant effect of the tested oil was evaluated by measuring its 2,2-diphenyl-l-1-picrylhydrazil radical scavenging ability and the antiradical dose required to cause a 50% inhibition (IC50) was recorded. The antifungal activity of essential oils was evaluated against 53 human pathogenic yeasts using a disc paper diffusion method. Our results show that the major components present in the clove bund oil were eugenol (88.6%), eugenyl acetate (5.6%), beta-caryophyllene (1.4%) and 2-heptanone (0.9%). The tested essential oil exhibited a very strong radical scavenging activity (IC50 = 0.2 microg ml-1) when compared with the synthetic antioxidant (tert-butylated hydroxytoluene, IC50 = 11.5 microg ml-1). On the other hand, this species displayed an important antifungal effect against the tested strains. It is clear that clove oil shows powerful antifungal activity; and it can be used as an easily accessible source of natural antioxidants and in pharmaceutical applications.

  14. Thermocapillary Bubble Migration: Thermal Boundary Layers for Large Marangoni Numbers

    NASA Technical Reports Server (NTRS)

    Balasubramaniam, R.; Subramanian, R. S.

    1996-01-01

    The migration of an isolated gas bubble in an immiscible liquid possessing a temperature gradient is analyzed in the absence of gravity. The driving force for the bubble motion is the shear stress at the interface which is a consequence of the temperature dependence of the surface tension. The analysis is performed under conditions for which the Marangoni number is large, i.e. energy is transferred predominantly by convection. Velocity fields in the limit of both small and large Reynolds numbers are used. The thermal problem is treated by standard boundary layer theory. The outer temperature field is obtained in the vicinity of the bubble. A similarity solution is obtained for the inner temperature field. For both small and large Reynolds numbers, the asymptotic values of the scaled migration velocity of the bubble in the limit of large Marangoni numbers are calculated. The results show that the migration velocity has the same scaling for both low and large Reynolds numbers, but with a different coefficient. Higher order thermal boundary layers are analyzed for the large Reynolds number flow field and the higher order corrections to the migration velocity are obtained. Results are also presented for the momentum boundary layer and the thermal wake behind the bubble, for large Reynolds number conditions.

  15. All Numbers Are Not Equal: An Electrophysiological Investigation of Small and Large Number Representations

    PubMed Central

    Hyde, Daniel C.; Spelke, Elizabeth S.

    2009-01-01

    Behavioral and brain imaging research indicates that human infants, humans adults, and many non-human animals represent large non-symbolic numbers approximately, discriminating between sets with a ratio limit on accuracy. Some behavioral evidence, especially with human infants, suggests that these representations differ from representations of small numbers of objects. To investigate neural signatures of this distinction, event-related potentials (ERPs) were recorded as adult humans passively viewed the sequential presentation of dot arrays in an adaptation paradigm. In two studies, subjects viewed successive arrays of a single number of dots interspersed with test arrays presenting the same or a different number; numerical range (small numerical quantities 1-3 vs. large numerical quantities 8-24) and ratio difference varied across blocks as continuous variables were controlled. An early-evoked component (N1), observed over widespread posterior scalp locations, was modulated by absolute number with small but not large number arrays. In contrast, a later component (P2p), observed over the same scalp locations, was modulated by the ratio difference between arrays for large but not small numbers. Despite many years of experience with symbolic systems that apply equally to all numbers, adults spontaneously process small and large numbers differently. They appear to treat small-number arrays as individual objects to be tracked through space and time, and large-number arrays as cardinal values to be compared and manipulated. PMID:18752403

  16. Resurrection of large lepton number asymmetries from neutrino flavor oscillations

    NASA Astrophysics Data System (ADS)

    Barenboim, Gabriela; Kinney, William H.; Park, Wan-Il

    2017-02-01

    We numerically solve the evolution equations of neutrino three-flavor density matrices, and show that, even if neutrino oscillations mix neutrino flavors, large lepton number asymmetries are still allowed in certain limits by big bang nucleosynthesis.

  17. Towards large-Chern-number topological phases by periodic quenching

    NASA Astrophysics Data System (ADS)

    Xiong, Tian-Shi; Gong, Jiangbin; An, Jun-Hong

    2016-05-01

    Topological phases with large Chern numbers have important implications. They were previously predicted to exist by considering fabricated long-range interactions or multilayered materials. Stimulated by recent wide interests in Floquet topological phases, here we propose a scheme to engineer large-Chern-number phases with ease by periodic quenching. Using a two-band system as an example, we theoretically show how a variety of topological phases with widely tunable Chern numbers can be generated by periodic quenching between two simple Hamiltonians that otherwise give low Chern numbers. The obtained large Chern numbers are explained through the emergence of multiple Dirac cones in the Floquet spectra. The transition lines between different topological phases in the two-band model are also explicitly found, thus establishing a class of easily solvable but very rich systems useful for further understandings and applications of topological phases in periodically driven systems.

  18. Large Number Discrimination in 6-Month-Old Infants.

    ERIC Educational Resources Information Center

    Xu, Fei; Spelke, Elizabeth S.

    2000-01-01

    Two experiments examined 6-month-olds' ability to discriminate between visual displays of various number of dots varying in size and position, and with controls for other extraneous variables. Findings indicated that infants could discriminate between large sets on the basis of numerosity if they differed by a large ratio (8 versus 16, but not 8…

  19. Explicit and probabilistic constructions of distance graphs with small clique numbers and large chromatic numbers

    NASA Astrophysics Data System (ADS)

    Kupavskii, A. B.

    2014-02-01

    We study distance graphs with exponentially large chromatic numbers and without k-cliques, that is, complete subgraphs of size k. Explicit constructions of such graphs use vectors in the integer lattice. For a large class of graphs we find a sharp threshold for containing a k-clique. This enables us to improve the lower bounds for the maximum of the chromatic numbers of such graphs. We give a new probabilistic approach to the construction of distance graphs without k-cliques, and this yields better lower bounds for the maximum of the chromatic numbers for large k.

  20. Effects of Rotation on a Large Rayleigh Number Bridgman Furnace

    NASA Astrophysics Data System (ADS)

    Foster, M. R.

    1998-11-01

    It is known that rotating a Bridgman furnace in a centrifuge improves the crystal quality at large Rayleigh number(W.Weber, G. Neumann & G. Mddot u)ller, J. Crys. Growth 100, 145 (1990). Here we determine improvements achieved by rotating the ampoule about its vertical axis. We know that, in the absence of rotation, if the Rayleigh number, Ra, is large and Biot number is small, much larger solutal variations in the crystal are produced by azimuthal variations in the side-wall heating than from the axisymmetric component. However, at moderately large Taylor numbers, the first effects are to reduce the helical variation in solute concentration by inhibiting vertical motion in the melt, and so for Taylor numbers larger than O(Ra^1/6), the melt convection due to axisymmetric heating produces the larger solutal variation than that from azimuthal variations. As the Taylor number increases, the helical component of material segregation continues to decline in magnitude. However, in spite of changes in the interfacial boundary layer for Taylor numbers of order Ra^1/3 and larger, the outer flow/boundary layer coupling is unaltered for axisymmetry. It is not until the Taylor number is O(Ra^1/2) that the axisymmetric flow undergoes a change sufficiently dramatic to allow significant reduction in the material segregation from the zero-rotation case.

  1. First Contact with Astronomy for a Large Number of Pupils

    NASA Astrophysics Data System (ADS)

    Ros, Rosa M.

    The Spanish Royal Society of Physics (RSEF) co-operates with several European institutions to promote Physics and Astronomy in schools through the project ""Fisica en Acción"". This project started in 2000 integrated with the project ""Physics on Stage"" created by CERN ESA and ESO. ""Fisica en Accion"" is a Spanish competition bringing together a group of teachers in a common endeavour: * showing ""physics demonstrations"" to general audiences * engaging pedagogical presentations to introduce science into the classroom. The national final event of this competition takes place annually in a science museum during one weekend (entrance is free). The Science Fair is especially well received by visitors who can ask the demonstrators-teachers questions. Younger visitors enjoy experimenting for themselves. After the first year the RSEF introduced special prizes to encourage schools to participate in astronomical categories. The ""Centro de Astrobiologia de Madrid"" gave a cash prize and a visit to their headquarters to the winners. The ""Instituto Astrofísico de Canarias"" offered a prize of a trip to its observatories. In summary the astronomical elements of ""Fisica en Acción"" stimulate the teachers and students' interest in international activities and has been the first contact with Astronomy for a large number of pupils.

  2. The factorization of large composite numbers on the MPP

    NASA Technical Reports Server (NTRS)

    Mckurdy, Kathy J.; Wunderlich, Marvin C.

    1987-01-01

    The continued fraction method for factoring large integers (CFRAC) was an ideal algorithm to be implemented on a massively parallel computer such as the Massively Parallel Processor (MPP). After much effort, the first 60 digit number was factored on the MPP using about 6 1/2 hours of array time. Although this result added about 10 digits to the size number that could be factored using CFRAC on a serial machine, it was already badly beaten by the implementation of Davis and Holdridge on the CRAY-1 using the quadratic sieve, an algorithm which is clearly superior to CFRAC for large numbers. An algorithm is illustrated which is ideally suited to the single instruction multiple data (SIMD) massively parallel architecture and some of the modifications which were needed in order to make the parallel implementation effective and efficient are described.

  3. Large negative numbers in number theory, thermodynamics, information theory, and human thermodynamics

    NASA Astrophysics Data System (ADS)

    Maslov, V. P.

    2016-10-01

    We show how the abstract analytic number theory of Maier, Postnikov, and others can be extended to include negative numbers and apply this to thermodynamics, information theory, and human thermodynamics. In particular, we introduce a certain large number N 0 on the "zero level" with a high multiplicity number q i ≫ 1 related to the physical concept of gap in the spectrum. We introduce a general notion of "hole," similar to the Dirac hole in physics, in the theory. We also consider analogs of thermodynamical notions in human thermodynamics, in particular, in connection with the role of the individual in history.

  4. Synthetic gene design with a large number of hidden stops.

    PubMed

    Phan, Vinhthuy; Saha, Sudip; Pandey, Ashutosh; Wong, Tit-Yee

    2010-01-01

    Hidden stops are nucleotide triples TAA, TAG and TGA that appear on the second and third reading frames of a protein coding gene. Recent studies suggested the important role of hidden stops in preventing misread of mRNA. We study the problem of designing protein-encoding genes with large number of hidden stops under several biological constraints. With simple constraints, redesigned genes have provable maximal number of hidden stops. With more complex constraints, redesigned genes still have many more hidden stops than wild-type genes. We showed that redesigned genes have a distinct positional advantage in assisting early termination of frame-shifts.

  5. Stellar convection 3: Convection at large Rayleigh numbers

    NASA Technical Reports Server (NTRS)

    Marcus, P. S.

    1979-01-01

    A three dimensional study of convection in a self gravitating sphere of Boussinesq fluid with a Rayleigh number of 10 to the 10th power and a Prandtl of 1 is presented. The velocity and temperature of the fluid are computed at the largest wavelengths using spectral methods. A confirmation that the fluid is anisotropic and that the energy spectra are not smooth functions of wavelength but have a large amount of fine structure is discussed. The parameterization of the transport properties of the unresolvable inertial subrange with eddy viscosities and diffusivities is described. The time dependent fluctuations in the energy spectra and how they cascade from large to small wavelengths is examined.

  6. Generation of Large Numbers of Independently Transformed Fertile Barley Plants.

    PubMed Central

    Wan, Y.; Lemaux, P. G.

    1994-01-01

    A rapid, efficient, and reproducible system to generate large numbers of independently transformed, self-fertile, transgenic barley (Hordeum vulgare L.) plants is described. Immature zygotic embryos, young callus, and microspore-derived embryos were bombarded with a plasmid containing bar and uidA either alone or in combination with another plasmid containing a barley yellow dwarf virus coat protein (BYDVcp) gene. A total of 91 independent bialaphos-resistant callus lines expressed functional phosphinothricin acetyltransferase, the product of bar. Integration of bar was confirmed by DNA hybridization in the 67 lines analyzed. Co-transformation frequencies of 84 and 85% were determined for the two linked genes (bar and uidA) and for two unlinked genes (bar and the BYDVcp gene), respectively. More than 500 green, fertile, transgenic plants were regenerated from 36 transformed callus lines on bialaphos-containing medium; albino plants only were regenerated from 41 lines. T0 plants in 25 lines (three plants per line) were analyzed by DNA hybridization, and all contained bar. Most contained the same integration patterns for the introduced genes (bar, uidA, and the BYDVcp gene) as their parental callus lines. Transmission of the genes to T1 progeny was confirmed in the five families analyzed by DNA hybridization. A germination test of immature T1 embryos on bialaphos-containing medium was useful for selecting individuals that were actively expressing bar, although this was not a good indicator of the presence or absence of bar. Expression of bar in some progeny plants was indicated by resistance to the herbicide Basta. The T1 plants were in soil approximately 7 months after bombardment of the immature embryo. PMID:12232059

  7. Automated DNA extraction for large numbers of plant samples.

    PubMed

    Mehle, Nataša; Nikolić, Petra; Rupar, Matevž; Boben, Jana; Ravnikar, Maja; Dermastia, Marina

    2013-01-01

    The method described here is a rapid, total DNA extraction procedure applicable to a large number of plant samples requiring pathogen detection. The procedure combines a simple and quick homogenization step of crude extracts with DNA extraction based upon the binding of DNA to magnetic beads. DNA is purified in an automated process in which the magnetic beads are transferred through a series of washing buffers. The eluted DNA is suitable for efficient amplification in PCR reactions.

  8. Nonlinear instability of elementary stratified flows at large Richardson number.

    PubMed

    Majda, Andrew J.; Shefter, Michael G.

    2000-03-01

    Elementary stably stratified flows with linear instability at all large Richardson numbers have been introduced recently by the authors [J. Fluid Mech. 376, 319-350 (1998)]. These elementary stratified flows have spatially constant but time varying gradients for velocity and density. Here the nonlinear stability of such flows in two space dimensions is studied through a combination of numerical simulations and theory. The elementary flows that are linearly unstable at large Richardson numbers are purely vortical flows; here it is established that from random initial data, linearized instability spontaneously generates local shears on buoyancy time scales near a specific angle of inclination that nonlinearly saturates into localized regions of strong mixing with density overturning resembling Kelvin-Helmholtz instability. It is also established here that the phase of these unstable waves does not satisfy the dispersion relation of linear gravity waves. The vortical flows are one family of stably stratified flows with uniform shear layers at the other extreme and elementary stably stratified flows with a mixture of vorticity and strain exhibiting behavior between these two extremes. The concept of effective shear is introduced for these general elementary flows; for each large Richardson number there is a critical effective shear with strong nonlinear instability, density overturning, and mixing for elementary flows with effective shear below this critical value. The analysis is facilitated by rewriting the equations for nonlinear perturbations in vorticity-stream form in a mean Lagrangian reference frame. (c) 2000 American Institute of Physics.

  9. Rotating thermal convection at very large Rayleigh numbers

    NASA Astrophysics Data System (ADS)

    Weiss, Stephan; van Gils, Dennis; Ahlers, Guenter; Bodenschatz, Eberhard

    2016-11-01

    The large scale thermal convection systems in geo- and astrophysics are usually influenced by Coriolis forces caused by the rotation of their celestial bodies. To better understand the influence of rotation on the convective flow field and the heat transport at these conditions, we study Rayleigh-Bénard convection, using pressurized sulfur hexaflouride (SF6) at up to 19 bars in a cylinder of diameter D=1.12 m and a height of L=2.24 m. The gas is heated from below and cooled from above and the convection cell sits on a rotating table inside a large pressure vessel (the "Uboot of Göttingen"). With this setup Rayleigh numbers of up to Ra =1015 can be reached, while Ekman numbers as low as Ek =10-8 are possible. The Prandtl number in these experiment is kept constant at Pr = 0 . 8 . We report on heat flux measurements (expressed by the Nusselt number Nu) as well as measurements from more than 150 temperature probes inside the flow. We thank the Deutsche Forschungsgemeinschaft (DFG) for financial support through SFB963: "Astrophysical Flow Instabilities and Turbulence". The work of GA was supported in part by the US National Science Foundation through Grant DMR11-58514.

  10. Analog Magnitudes Support Large Number Ordinal Judgments in Infancy.

    PubMed

    vanMarle, Kristy; Mou, Yi; Seok, Jin H

    2016-01-01

    Few studies have explored the source of infants' ordinal knowledge, and those that have are equivocal regarding the underlying representational system. The present study sought clear evidence that the approximate number system, which underlies children's cardinal knowledge, may also support ordinal knowledge in infancy; 10 - to 12-month-old infants' were tested with large sets (>3) in an ordinal choice task in which they were asked to choose between two hidden sets of food items. The difficulty of the comparison varied as a function of the ratio between the sets. Infants reliably chose the greater quantity when the sets differed by a 2:3 ratio (4v6 and 6v9), but not when they differed by a 3:4 ratio (6v8) or a 7:8 ratio (7v8). This discrimination function is consistent with previous studies testing the precision of number and time representations in infants of roughly this same age, thus providing evidence that the approximate number system can support ordinal judgments in infancy. The findings are discussed in light of recent proposals that different mechanisms underlie infants' reasoning about small and large numbers.

  11. All Numbers Are Not Equal: An Electrophysiological Investigation of Small and Large Number Representations

    ERIC Educational Resources Information Center

    Hyde, Daniel C.; Spelke, Elizabeth S.

    2009-01-01

    Behavioral and brain imaging research indicates that human infants, humans adults, and many nonhuman animals represent large nonsymbolic numbers approximately, discriminating between sets with a ratio limit on accuracy. Some behavioral evidence, especially with human infants, suggests that these representations differ from representations of small…

  12. Dirac cosmology. [large dimensionless numbers relation to universe age

    NASA Technical Reports Server (NTRS)

    Canuto, V.; Lodenquai, J.

    1977-01-01

    The large numbers hypothesis (LNH) linking the magnitude of large dimensionless ratios in physics (on the order of 10 to the 40th power) to cosmic time is examined. The LNH is checked against evidence on 3K background radiation of the universe and the (log N, log S)-relation for radio galaxies. Earlier criticisms of LNH by Gamow and Teller are examined, and alternative hypotheses put forth by Dicke and Carter (1974) are discussed. The discussion covers: continuous (additive or multiplicative) creation of matter, the Einstein metric and the atomic metric, and general cosmological and local astronomical implications of LNH. LNH is also viewed in relation to solar evolution and pulsar physics.

  13. Improving CASINO performance for models with large number of electrons

    SciTech Connect

    Anton, L; Alfe, D; Hood, R Q; Tanqueray, D

    2009-05-13

    Quantum Monte Carlo calculations have at their core algorithms based on statistical ensembles of multidimensional random walkers which are straightforward to use on parallel computers. Nevertheless some computations have reached the limit of the memory resources for models with more than 1000 electrons because of the need to store a large amount of electronic orbitals related data. Besides that, for systems with large number of electrons, it is interesting to study if the evolution of one configuration of random walkers can be done faster in parallel. We present a comparative study of two ways to solve these problems: (1) distributed orbital data done with MPI or Unix inter-process communication tools, (2) second level parallelism for configuration computation.

  14. The 17 GHz active region number

    SciTech Connect

    Selhorst, C. L.; Pacini, A. A.; Costa, J. E. R.; Giménez de Castro, C. G.; Valio, A.; Shibasaki, K.

    2014-08-01

    We report the statistics of the number of active regions (NAR) observed at 17 GHz with the Nobeyama Radioheliograph between 1992, near the maximum of cycle 22, and 2013, which also includes the maximum of cycle 24, and we compare with other activity indexes. We find that NAR minima are shorter than those of the sunspot number (SSN) and radio flux at 10.7 cm (F10.7). This shorter NAR minima could reflect the presence of active regions generated by faint magnetic fields or spotless regions, which were a considerable fraction of the counted active regions. The ratio between the solar radio indexes F10.7/NAR shows a similar reduction during the two minima analyzed, which contrasts with the increase of the ratio of both radio indexes in relation to the SSN during the minimum of cycle 23-24. These results indicate that the radio indexes are more sensitive to weaker magnetic fields than those necessary to form sunspots, of the order of 1500 G. The analysis of the monthly averages of the active region brightness temperatures shows that its long-term variation mimics the solar cycle; however, due to the gyro-resonance emission, a great number of intense spikes are observed in the maximum temperature study. The decrease in the number of these spikes is also evident during the current cycle 24, a consequence of the sunspot magnetic field weakening in the last few years.

  15. Electrohydrodynamic deformation of drops and bubbles at large Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Schnitzer, Ory

    2015-11-01

    In Taylor's theory of electrohydrodynamic drop deformation by a uniform electric field, inertia is neglected at the outset, resulting in fluid velocities that scale with E2, E being the applied-field magnitude. When considering strong fields and low viscosity fluids, the Reynolds number predicted by this scaling may actually become large, suggesting the need for a complementary large-Reynolds-number analysis. Balancing viscous and electrical stresses reveals that the velocity scales with E 4 / 3. Considering a gas bubble, the external flow is essentially confined to two boundary layers propagating from the poles to the equator, where they collide to form a radial jet. Remarkably, at leading order in the Capillary number the unique scaling allows through application of integral mass and momentum balances to obtain a closed-form expression for the O (E2) bubble deformation. Owing to a concentrated pressure load at the vicinity of the collision region, the deformed profile features an equatorial dimple which is non-smooth on the bubble scale. The dynamical importance of internal circulation in the case of a liquid drop leads to an essentially different deformation mechanism. This is because the external boundary layer velocity attenuates at a short distance from the interface, while the internal boundary-layer matches with a Prandtl-Batchelor (PB) rotational core. The dynamic pressure associated with the internal circulation dominates the interfacial stress profile, leading to an O (E 8 / 3) deformation. The leading-order deformation can be readily determined, up to the PB constant, without solving the circulating boundary-layer problem. To encourage attempts to verify this new scaling, we shall suggest a favourable experimental setup in which inertia is dominant, while finite-deformation, surface-charge advection, and gravity effects are negligible.

  16. Workjobs II: Number Activities for Early Childhood.

    ERIC Educational Resources Information Center

    Baratta-Lorton, Mary

    This curriculum guide presents a program of 20 open-ended math activities to be used to supplement the math programs in kindergarten, first, or second grade classrooms. The program consists of child-oriented counters and gameboards used to explore the concept of number from counting to making up and solving addition and subtraction equations. Each…

  17. Saturation of the magnetorotational instability at large Elsasser number

    NASA Astrophysics Data System (ADS)

    Jamroz, B.; Julien, K.; Knobloch, E.

    2008-09-01

    The magnetorotational instability is investigated within the shearing box approximation in the large Elsasser number regime. In this regime, which is of fundamental importance to astrophysical accretion disk theory, shear is the dominant source of energy, but the instability itself requires the presence of a weaker vertical magnetic field. Dissipative effects are weaker still but not negligible. The regime explored retains the condition that (viscous and ohmic) dissipative forces do not play a role in the leading order linear instability mechanism. However, they are sufficiently large to permit a nonlinear feedback mechanism whereby the turbulent stresses generated by the MRI act on and modify the local background shear in the angular velocity profile. To date this response has been omitted in shearing box simulations and is captured by a reduced pde model derived here from the global MHD fluid equations using multiscale asymptotic perturbation theory. Results from numerical simulations of the reduced pde model indicate a linear phase of exponential growth followed by a nonlinear adjustment to algebraic growth and decay in the fluctuating quantities. Remarkably, the velocity and magnetic field correlations associated with these algebraic growth and decay laws conspire to achieve saturation of the angular momentum transport. The inclusion of subdominant ohmic dissipation arrests the algebraic growth of the fluctuations on a longer, dissipative time scale.

  18. Saturation of the Magnetorotational Instability at Large Elssaser Number

    NASA Astrophysics Data System (ADS)

    Julien, Keith; Jamroz, Benjamin; Knobloch, Edgar

    2009-11-01

    The MRI is believed to play an important role in accretion disk physics in extracting angular momentum from the disk and allowing accretion to take place. The instability is investigated within the shearing box approximation under conditions of fundamental importance to astrophysical accretion disk theory. The shear is taken to be the dominant source of energy, but the instability itself requires the presence of a weaker vertical magnetic field. Dissipative effects are suffiently weak that the Elsasser number is large. Thus dissipative forces do not play a role in the leading order linear instability mechanism. However, they are sufficiently large to permit a nonlinear feedback mechanism whereby the turbulent stresses generated by the MRI act on and modify the local background shear in the angular velocity profile. To date this response has been omitted in shearing box simulations and is captured by a reduced pde model derived from the global MHD fluid equations using multiscale asymptotic perturbation theory. Results from simulations of the model indicate a linear phase of exponential growth followed by a nonlinear adjustment to algebraic growth and decay in the fluctuating quantities. Remarkably, the velocity and magnetic field correlations associated with these growth and decay laws conspire to achieve saturation of angular momentum transport.

  19. Viscous range of turbulent scalar of large Prandtl number

    NASA Astrophysics Data System (ADS)

    Qian, J.

    1995-02-01

    The analytical theory of a turbulent scalar, developed in previous papers is extended to the case of large Prandtl number. The fluctuation character of the least principal rate of strain gamma has an important effect upon the scalar spectrum. The scalar variance spectrum in the viscous range is F(k) = 4.472 (nu/epsilon)(exp 1/2) chi k(exp -1) H(x), X is identical to (k/k(sub b))(exp 2), H(x) is a dimensionless universal function and is determined by solving numerically the closed spectral dynamical equations. A simple fitting formula of the numerical result is H(x) = 0.7687 exp(- 3.79x) + 0.2313 exp(-11.13 x), which corresponds a two-values fluctuation model of gamma. Here upsilon is the kinematic viscosity, k(sub b) is identical to (epsilon/upsilon mu(exp 2))(exp 1/4) is the Batchelor wavenumber, mu is the scalar diffusivity, and epsilon and eni are respectively the energy and variance dissipation rates.

  20. Multiassignment for tracking a large number of overlapping objects

    NASA Astrophysics Data System (ADS)

    Kirubarajan, Thiagalingam; Bar-Shalom, Yaakov; Pattipati, Krishna R.

    1997-10-01

    In this paper we present a new technique for data association using multiassignment for tracking a large number of closely spaced (and overlapping) objects. The algorithm is illustrated on a biomedical problem, namely the tracking of a group of fibroblast (tissue) cells from an image sequence, which motivated this work. The algorithm presents a novel iterated approach to multiassignment using successive one-to-one assignments of decreasing size with modified costs. The cost functions, which are adjusted depending on the 'depth' of the current assignment level and on the tracking results, are derived. The resulting assignments are used to form, maintain and terminate tracks with a modified version of the probabilistic data association filter, which can handle the contention for a single measurement among multiple tracks in addition to the association of multiple measurements to a single track. Estimation results are given and compared with those of the standard 2-dimensional one-to-one assignment algorithm. It is shown that iterated multiassignment results in superior measurement-to- track association.

  1. The large lungs of elite swimmers: an increased alveolar number?

    PubMed

    Armour, J; Donnelly, P M; Bye, P T

    1993-02-01

    In order to obtain further insight into the mechanisms relating to the large lung volumes of swimmers, tests of mechanical lung function, including lung distensibility (K) and elastic recoil, pulmonary diffusion capacity, and respiratory mouth pressures, together with anthropometric data (height, weight, body surface area, chest width, depth and surface area), were compared in eight elite male swimmers, eight elite male long distance athletes and eight control subjects. The differences in training profiles of each group were also examined. There was no significant difference in height between the subjects, but the swimmers were younger than both the runners and controls, and both the swimmers and controls were heavier than the runners. Of all the training variables, only the mean total distance in kilometers covered per week was significantly greater in the runners. Whether based on: (a) adolescent predicted values; or (b) adult male predicted values, swimmers had significantly increased total lung capacity ((a) 145 +/- 22%, (mean +/- SD) (b) 128 +/- 15%); vital capacity ((a) 146 +/- 24%, (b) 124 +/- 15%); and inspiratory capacity ((a) 155 +/- 33%, (b) 138 +/- 29%), but this was not found in the other two groups. Swimmers also had the largest chest surface area and chest width. Forced expiratory volume in one second (FEV1) was largest in the swimmers ((b) 122 +/- 17%) and FEV1 as a percentage of forced vital capacity (FEV1/FVC)% was similar for the three groups. Pulmonary diffusing capacity (DLCO) was also highest in the swimmers (117 +/- 18%). All of the other indices of lung function, including pulmonary distensibility (K), elastic recoil and diffusion coefficient (KCO), were similar. These findings suggest that swimmers may have achieved greater lung volumes than either runners or control subjects, not because of greater inspiratory muscle strength, or differences in height, fat free mass, alveolar distensibility, age at start of training or sternal length or

  2. Detecting Large Copy Number Variants Using Exome Genotyping Arrays In a Large Swedish Schizophrenia Sample

    PubMed Central

    Szatkiewicz, Jin P.; Neale, Benjamin M.; O'Dushlaine, Colm; Fromer, Menachem; Goldstein, Jacqueline I.; Moran, Jennifer L.; Chambert, Kimberly; Kähler, Anna; Magnusson, Patrik KE; Hultman, Christina M.; Sklar, Pamela; Purcell, Shaun; McCarroll, Steven A.; Sullivan, Patrick F.

    2014-01-01

    Although copy number variants (CNVs) are important in genomic medicine, CNVs have not been systematically assessed for many complex traits. Several large rare CNVs increase risk for schizophrenia (SCZ) and autism and often demonstrate pleiotropic effects; however, their frequencies in the general population and other complex traits are unknown. Genotyping large numbers of samples is essential for progress. Large cohorts from many different diseases are being genotyped using exome-focused arrays designed to detect uncommon or rare protein-altering sequence variation. Although these arrays were not designed for CNV detection, the hybridization intensity data generated in each experiment could, in principle, be used for gene-focused CNV analysis. Our goal was to evaluate the extent to which CNVs can be detected using data from one particular exome array (the Illumina Human Exome Bead Chip). We genotyped 9, 100 Swedish subjects (3, 962 cases with SCZ and 5, 138 controls) using both standard GWAS arrays and exome arrays. In comparison to CNVs detected using GWAS arrays, we observed high sensitivity and specificity for detecting genic CNVs ≥400 kb including known pathogentic CNVs along with replicating the literature finding that cases with SCZ had greater enrichment for genic CNVs. Our data confirm the association of SCZ with 16p11.2 duplications and 22q11.2 deletions and suggest a novel association with deletions at 11q12.2. Our results suggest the utility of exome focused arrays in surveying large genic CNVs in very large samples; and thereby open the door for new opportunities such as conducting well-powered CNV assessment and comparisons between different diseases. The use of a single platform also minimizes potential confounding factors that could impact accurate detection. PMID:23938935

  3. 27% Probable: Estimating Whether or Not Large Numbers Are Prime.

    ERIC Educational Resources Information Center

    Bosse, Michael J.

    2001-01-01

    This brief investigation exemplifies such considerations by relating concepts from number theory, set theory, probability, logic, and calculus. Satisfying the call for students to acquire skills in estimation, the following technique allows one to "immediately estimate" whether or not a number is prime. (MM)

  4. A MODEL OF NONBELIEF IN THE LAW OF LARGE NUMBERS

    PubMed Central

    Benjamin, Daniel J.; Rabin, Matthew; Raymond, Collin

    2015-01-01

    People believe that, even in very large samples, proportions of binary signals might depart significantly from the population mean. We model this “non-belief in the Law of Large Numbers” by assuming that a person believes that proportions in any given sample might be determined by a rate different than the true rate. In prediction, a non-believer expects the distribution of signals will have fat tails. In inference, a non-believer remains uncertain and influenced by priors even after observing an arbitrarily large sample. We explore implications for beliefs and behavior in a variety of economic settings. PMID:27087795

  5. The Law of Large Numbers and Poker Machine Simulations.

    ERIC Educational Resources Information Center

    Fletcher, Rod

    2000-01-01

    Creates graphs to see how the relative frequency of an event tends to approach the probability of that event as the number of trials increases. Uses a simulation of a poker machine to provide context for this subject. (ASK)

  6. Getting Active in the Large Lecture

    ERIC Educational Resources Information Center

    Huerta, Juan Carlos

    2007-01-01

    The benefits of active learning are well documented; nonetheless, the implementation of active learning strategies can be challenging in large lecture environments. The project will examine the research supporting active learning, present the implementation of simple active learning techniques in large lecture classes, and provide evidence to test…

  7. Planing-surface Tests at Large Froude Numbers - Airfoil Comparison

    NASA Technical Reports Server (NTRS)

    Sambraus, A

    1938-01-01

    The take-off capacity of a flying boat depends upon the design of the hull bottom ahead as well as aft of the step. Systematic tests - largely made by industry itself - had proved the benefit accruing from a well designed hull bottom long before theoretical insight into the flow phenomena involved had been obtained. The theoretical framing of the problem was beset with serious difficulties and, though restricted to the processes within range of the planing bottom ahead of the step, the solutions do not yet afford a comprehensive survey.

  8. Active optics with a minimum number of actuators

    NASA Astrophysics Data System (ADS)

    Lemaitre, Gerard R.

    2014-06-01

    Optics for astronomy implies powerful developments of active and adaptive optics methods applied to instrumentation from X-rays to the near infrared for the design of telescopes, spectrographs, and coronagraph planet finders. This presentation particularly emphasizes the development of active optics methods. Highly accurate and remarkably smooth surfaces from active optics methods allow new optical systems that use highly aspheric and non-axisymmetric - freeform - surfaces. Depending on the goal and performance required for a deformable optical surface, elasticity theory analysis is carried out either with small deformation thin plate theory, large deformation thin plate theory, shallow spherical shell theory, or the weakly conical shell theory. A mirror thickness distribution is then determined as a function of associated bending actuators and boundary conditions. For a given optical shape to generate, one searches for optical solutions with a minimum number of actuators.

  9. Analyzing large numbers of data with a programmable calculator. Technic and applications.

    PubMed

    Whitcomb, C C

    1979-08-01

    Programmable calculators or minicomputers can be used in many laboratory activities, including tasks for which large numbers of data must be analyzed. A technic for organizing data into records and files for storage on magnetic tape and for using an index to find the locations of stored data quickly is described. Applications of the technic for analysis of quality control results, determination of potential HLA-compatible tissue donors, and analysis of laboratory administrative data are presented. These applications were written for use with a small programmable calculator.

  10. Small and Large Number Processing in Infants and Toddlers with Williams Syndrome

    ERIC Educational Resources Information Center

    Van Herwegen, Jo; Ansari, Daniel; Xu, Fei; Karmiloff-Smith, Annette

    2008-01-01

    Previous studies have suggested that typically developing 6-month-old infants are able to discriminate between small and large numerosities. However, discrimination between small numerosities in young infants is only possible when variables continuous with number (e.g. area or circumference) are confounded. In contrast, large number discrimination…

  11. The power of sensitivity analysis and thoughts on models with large numbers of parameters

    SciTech Connect

    Havlacek, William

    2008-01-01

    The regulatory systems that allow cells to adapt to their environments are exceedingly complex, and although we know a great deal about the intricate mechanistic details of many of these systems, our ability to make accurate predictions about their system-level behaviors is severely limited. We would like to make such predictions for a number of reasons. How can we reverse dysfunctional molecular changes of these systems that cause disease? More generally, how can we harness and direct cellular activities for beneficial purposes? Our ability to make accurate predictions about a system is also a measure ofour fundamental understanding of that system. As evidenced by our mastery of technological systems, a useful understanding ofa complex system can often be obtained through the development and analysis ofa mathematical model, but predictive modeling of cellular regulatory systems, which necessarily relies on quantitative experimentation, is still in its infancy. There is much that we need to learn before modeling for practical applications becomes routine. In particular, we need to address a number of issues surrounding the large number of parameters that are typically found in a model for a cellular regulatory system.

  12. Patterns of seismic activity preceding large earthquakes

    NASA Technical Reports Server (NTRS)

    Shaw, Bruce E.; Carlson, J. M.; Langer, J. S.

    1992-01-01

    A mechanical model of seismic faults is employed to investigate the seismic activities that occur prior to major events. The block-and-spring model dynamically generates a statistical distribution of smaller slipping events that precede large events, and the results satisfy the Gutenberg-Richter law. The scaling behavior during a loading cycle suggests small but systematic variations in space and time with maximum activity acceleration near the future epicenter. Activity patterns inferred from data on seismicity in California demonstrate a regional aspect; increased activity in certain areas are found to precede major earthquake events. One example is given regarding the Loma Prieta earthquake of 1989 which is located near a fault section associated with increased activity levels.

  13. Single and large grain activities at Fermilab

    SciTech Connect

    Antoine, Claire; /Fermilab

    2006-01-01

    This paper describes the ongoing activities at Fermilab for large grains and monocrystalline niobium. In addition to acquisition of local fabrication expertise, we plan to develop an R&D program dedicated to evidence the possible influence of crystal orientation on physical and chemical properties of niobium, such as mechanical properties, magnetic properties or surface contamination. Some considerations are also given about the morphology at grain boundaries and its role on the behavior of superconducting cavities.

  14. Large-Eddy Simulation Analysis of Unsteady Separation Over a Pitching Airfoil at High Reynolds Number

    DTIC Science & Technology

    2013-12-24

    helicopter rotor blades, wind turbine blades, pitching and flapping airfoils and wings , and rotating turbomachinery blades. For instance, helicopter...of turbulent flow over a pitching airfoil at realistic Reynolds and Mach numbers is performed. Numerical stability at high Reynolds number...Approved for Public Release; Distribution Unlimited Large-Eddy Simulation Analysis of Unsteady Separation Over a Pitching Airfoil at High Reynolds

  15. Toddler Subtraction with Large Sets: Further Evidence for an Analog-Magnitude Representation of Number

    ERIC Educational Resources Information Center

    Slaughter, Virginia; Kamppi, Dorian; Paynter, Jessica

    2006-01-01

    Two experiments were conducted to test the hypothesis that toddlers have access to an analog-magnitude number representation that supports numerical reasoning about relatively large numbers. Three-year-olds were presented with subtraction problems in which initial set size and proportions subtracted were systematically varied. Two sets of cookies…

  16. On the period of the coherent structure in boundary layers at large Reynolds numbers

    NASA Technical Reports Server (NTRS)

    Narayanan, M. A. B.; Marvin, J. G.

    1978-01-01

    The period of the large coherent structure in a subsonic, compressible, turbulent boundary layer was determined using the autocorrelation of the velocity and pressure fluctuations for Reynolds numbers between 5,000 and 35,000. In low Reynolds number flows the overall correlation period scaled with the outer variables - namely, the free stream velocity and the boundary layer thickness.

  17. Very Large Data Volumes Analysis of Collaborative Systems with Finite Number of States

    ERIC Educational Resources Information Center

    Ivan, Ion; Ciurea, Cristian; Pavel, Sorin

    2010-01-01

    The collaborative system with finite number of states is defined. A very large database is structured. Operations on large databases are identified. Repetitive procedures for collaborative systems operations are derived. The efficiency of such procedures is analyzed. (Contains 6 tables, 5 footnotes and 3 figures.)

  18. Solar concentration properties of flat fresnel lenses with large F-numbers

    NASA Technical Reports Server (NTRS)

    Cosby, R. M.

    1978-01-01

    The solar concentration performances of flat, line-focusing sun-tracking Fresnel lenses with selected f-numbers between 0.9 and 2.0 were analyzed. Lens transmittance was found to have a weak dependence on f-number, with a 2% increase occuring as the f-number is increased from 0.9 to 2.0. The geometric concentration ratio for perfectly tracking lenses peaked for an f-number near 1.35. Intensity profiles were more uniform over the image extent for large f-number lenses when compared to the f/0.9 lens results. Substantial decreases in geometri concentration ratios were observed for transverse tracking errors equal to or below 1 degree for all f-number lenses. With respect to tracking errors, the solar performance is optimum for f-numbers between 1.25 and 1.5.

  19. Effect of the capillary meniscus height on the instability of large Prandtl number Czochralski melt flow

    NASA Astrophysics Data System (ADS)

    Miroshnichenko, E.; Kit, E.; Gelfgat, A. Yu.

    2016-11-01

    Effect of the capillary meniscus on the instability of large Prandtl number Czochralski melt flow is studied experimentally. The measurements are conducted in two experimental facilities by two independent non-intrusive optical techniques. The quantitative results are presented as dependencies of the critical Grashof number (critical temperature difference) on the meniscus height for different Prandtl numbers, radii and aspect ratios. The results show that with increase of the meniscus height the critical temperature difference noticeably grows and sometimes doubles. Recently reported parametric relations for the critical Grashof number and oscillations frequency are extended to include parameters of the meniscus.

  20. On large-scale dynamo action at high magnetic Reynolds number

    SciTech Connect

    Cattaneo, F.; Tobias, S. M.

    2014-07-01

    We consider the generation of magnetic activity—dynamo waves—in the astrophysical limit of very large magnetic Reynolds number. We consider kinematic dynamo action for a system consisting of helical flow and large-scale shear. We demonstrate that large-scale dynamo waves persist at high Rm if the helical flow is characterized by a narrow band of spatial scales and the shear is large enough. However, for a wide band of scales the dynamo becomes small scale with a further increase of Rm, with dynamo waves re-emerging only if the shear is then increased. We show that at high Rm, the key effect of the shear is to suppress small-scale dynamo action, allowing large-scale dynamo action to be observed. We conjecture that this supports a general 'suppression principle'—large-scale dynamo action can only be observed if there is a mechanism that suppresses the small-scale fluctuations.

  1. Space Situational Awareness of Large Numbers of Payloads From a Single Deployment

    NASA Astrophysics Data System (ADS)

    Segerman, A.; Byers, J.; Emmert, J.; Nicholas, A.

    2014-09-01

    The nearly simultaneous deployment of a large number of payloads from a single vehicle presents a new challenge for space object catalog maintenance and space situational awareness (SSA). Following two cubesat deployments last November, it took five weeks to catalog the resulting 64 orbits. The upcoming Kicksat mission will present an even greater SSA challenge, with its deployment of 128 chip-sized picosats. Although all of these deployments are in short-lived orbits, future deployments will inevitably occur at higher altitudes, with a longer term threat of collision with active spacecraft. With such deployments, individual scientific payload operators require rapid precise knowledge of their satellites' locations. Following the first November launch, the cataloguing did not initially associate a payload with each orbit, leaving this to the satellite operators. For short duration missions, the time required to identify an experiment's specific orbit may easily be a large fraction of the spacecraft's lifetime. For a Kicksat-type deployment, present tracking cannot collect enough observations to catalog each small object. The current approach is to treat the chip cloud as a single catalog object. However, the cloud dissipates into multiple subclouds and, ultimately, tiny groups of untrackable chips. One response to this challenge may be to mandate installation of a transponder on each spacecraft. Directional transponder transmission detections could be used as angle observations for orbit cataloguing. Of course, such an approach would only be employable with cooperative spacecraft. In other cases, a probabilistic association approach may be useful, with the goal being to establish the probability of an element being at a given point in space. This would permit more reliable assessment of the probability of collision of active spacecraft with any cloud element. This paper surveys the cataloguing challenges presented by large scale deployments of small spacecraft

  2. Eulerian models for particle trajectory crossing in turbulent flows over a large range of Stokes numbers

    NASA Astrophysics Data System (ADS)

    Fox, Rodney O.; Vie, Aymeric; Laurent, Frederique; Chalons, Christophe; Massot, Marc

    2012-11-01

    Numerous applications involve a disperse phase carried by a gaseous flow. To simulate such flows, one can resort to a number density function (NDF) governed a kinetic equation. Traditionally, Lagrangian Monte-Carlo methods are used to solve for the NDF, but are expensive as the number of numerical particles needed must be large to control statistical errors. Moreover, such methods are not well adapted to high-performance computing because of the intrinsic inhomogeneity of the NDF. To overcome these issues, Eulerian methods can be used to solve for the moments of the NDF resulting in an unclosed Eulerian system of hyperbolic conservation laws. To obtain closure, in this work a multivariate bi-Gaussian quadrature is used, which can account for particle trajectory crossing (PTC) over a large range of Stokes numbers. This closure uses up to four quadrature points in 2-D velocity phase space to capture large-scale PTC, and an anisotropic Gaussian distribution around each quadrature point to model small-scale PTC. Simulations of 2-D particle-laden isotropic turbulence at different Stokes numbers are employed to validate the Eulerian models against results from the Lagrangian approach. Good agreement is found for the number density fields over the entire range of Stokes numbers tested. Research carried out at the Center for Turbulence Research 2012 Summer Program.

  3. Structure of Wall-Eddies at Very Large Reynolds Number--A Large-Scale PIV Study

    NASA Astrophysics Data System (ADS)

    Hommema, S. E.; Adrian, R. J.

    2000-11-01

    The results of an experiment performed in the first 5 m of the neutral atmospheric boundary layer are presented. Large-scale PIV measurements (up to 2 m × 2 m field-of-view) were obtained in the streamwise / wall-normal plane of a very-large Reynolds number (Re_θ > 10^6, based on momentum thickness and freestream velocity), flat-plate, zero-pressure-gradient boundary layer. Measurements were obtained at the SLTEST facility in the U.S. Army's Dugway Proving Grounds. Coherent packets of ramp-like structures with downstream inclination are observed and show a remarkable resemblance to those observed in typical laboratory-scale experiments at far lower Reynolds number. The results are interpreted in terms of a vortex packet paradigm(Adrian, R.J., C.D. Meinhart, and C.D. Tomkins, Vortex organization in the outer region of the turbulent boundary layer, to appear in J. Fluid Mech., 2000.) and begin to extend the model to high Reynolds numbers of technological importance. Additional results obtained during periods of non-neutral atmospheric stability are contrasted with those of the canonical neutral boundary layer. Sample smoke visualization images (3 m × 15 m field-of-view) are available online from the author.

  4. Large Active Retrodirective Arrays for Space Applications

    NASA Technical Reports Server (NTRS)

    Chernoff, R. C.

    1978-01-01

    An active retrodirective array (ARA) electronically points a microwave beam back at the apparent source of an incident pilot signal. Retrodirectivity is the result of phase conjugation of the pilot signal received by each element of the array. The problem of supplying the correct phase reference to the phase conjugation circuit (PCC) associated with each element of the array is solved by central phasing. By eliminating the need for structural rigidity, central phasing confers a decisive advantage on ARA's as large spaceborne antennas. A new form of central phasing suitable for very large arrays is described. ARA's may easily be modified to serve both as transmitting and receiving arrays simultaneously. Two new kinds of exact, frequency translating PCC's are described. Such PCC's provide the ARA with input-output isolation and freedom from squint. The pointing errors caused by the radial and transverse components of the ARA's velocity, by the propagation medium, and by multipath are discussed. A two element ARA breadboard was built and tested at JPL. Its performance is limited primarily by multipath induced errors.

  5. Assessment of sugarcane yield potential across large numbers of genotypes using canopy reflectance measurements

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Canopy reflectance indices have been used to monitor plant growth and estimate yields in many field crops. Little is known if canopy reflectance of sugarcane (a complex hybrid of Saccharum spp.) can be used to estimate growth and yield potential across large numbers of genotypes (clones) in the earl...

  6. Resistance law for a turbulent Taylor-Couette flow at very large Taylor numbers

    NASA Astrophysics Data System (ADS)

    Balonishnikov, A. M.

    2016-11-01

    Based on the semi-empirical model of the transport of the specific rate of turbulence energy dissipation, it has been concluded that the resistance laws are observed for a turbulent Taylor-Couette flow between independently rotating coaxial cylinders for very large Taylor numbers.

  7. Infants Use Different Mechanisms to Make Small and Large Number Ordinal Judgments

    ERIC Educational Resources Information Center

    vanMarle, Kristy

    2013-01-01

    Previous research has shown indirectly that infants may use two different mechanisms-an object tracking system and an analog magnitude mechanism--to represent small (less than 4) and large (greater than or equal to 4) numbers of objects, respectively. The current study directly tested this hypothesis in an ordinal choice task by presenting 10- to…

  8. Prospectus: towards the development of high-fidelity models of wall turbulence at large Reynolds number

    PubMed Central

    Klewicki, J. C.; Chini, G. P.; Gibson, J. F.

    2017-01-01

    Recent and on-going advances in mathematical methods and analysis techniques, coupled with the experimental and computational capacity to capture detailed flow structure at increasingly large Reynolds numbers, afford an unprecedented opportunity to develop realistic models of high Reynolds number turbulent wall-flow dynamics. A distinctive attribute of this new generation of models is their grounding in the Navier–Stokes equations. By adhering to this challenging constraint, high-fidelity models ultimately can be developed that not only predict flow properties at high Reynolds numbers, but that possess a mathematical structure that faithfully captures the underlying flow physics. These first-principles models are needed, for example, to reliably manipulate flow behaviours at extreme Reynolds numbers. This theme issue of Philosophical Transactions of the Royal Society A provides a selection of contributions from the community of researchers who are working towards the development of such models. Broadly speaking, the research topics represented herein report on dynamical structure, mechanisms and transport; scale interactions and self-similarity; model reductions that restrict nonlinear interactions; and modern asymptotic theories. In this prospectus, the challenges associated with modelling turbulent wall-flows at large Reynolds numbers are briefly outlined, and the connections between the contributing papers are highlighted. This article is part of the themed issue ‘Toward the development of high-fidelity models of wall turbulence at large Reynolds number’. PMID:28167585

  9. Coherent large-scale structures in high Reynolds number supersonic jets

    NASA Technical Reports Server (NTRS)

    Lepicovsky, J.; Ahuja, K. K.; Brown, W. H.; Burrin, R. H.

    1985-01-01

    The flow structure of a 50.8 mm (2 in) diameter jet operated at a full expanded Mach number of 1.37, with Reynolds numbers in the range 1.7 to 2.35 million, was examined for the first 20 jet diameters. To facilitate the study of the large scale structure, and determine any coherence, a discrete tone acoustic excitation method was used. Phase locked flow visualization as well as laser velocimeter quantitative measurements were made. The main conclusions derived from this study are: (1) large scale coherent like turbulence structures do exist in large Reynolds number supersonic jets, and they prevail even beyond the potential core; (2) the most preferential Strouhal number for these structures is in the vicinity of 0.4; and (3) quantitatively, the peak amplitudes of these structures are rather low, and are about 1% of the jet exit velocity. Finally, since a number of unique problems related to LV measurements in supersonic jets were encountered, a summary of these problems and lessons learned therefrom are also reported.

  10. Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica.

    PubMed

    Nishimura, Osamu; Hosoda, Kazutaka; Kawaguchi, Eri; Yazawa, Shigenobu; Hayashi, Tetsutaro; Inoue, Takeshi; Umesono, Yoshihiko; Agata, Kiyokazu

    2015-01-01

    We established a laboratory clonal strain of freshwater planarian (Dugesia japonica) that was derived from a single individual and that continued to undergo autotomous asexual reproduction for more than 20 years, and we performed large-scale genome sequencing and transcriptome analysis on it. Despite the fact that a completely clonal strain of the planarian was used, an unusually large number of mutations were detected. To enable quantitative genetic analysis of such a unique organism, we developed a new model called the Reference Gene Model, and used it to conduct large-scale transcriptome analysis. The results revealed large numbers of mutations not only outside but also inside gene-coding regions. Non-synonymous SNPs were detected in 74% of the genes for which valid ORFs were predicted. Interestingly, the high-mutation genes, such as metabolism- and defense-related genes, were correlated with genes that were previously identified as diverse genes among different planarian species. Although a large number of amino acid substitutions were apparently accumulated during asexual reproduction over this long period of time, the planarian maintained normal body-shape, behaviors, and physiological functions. The results of the present study reveal a unique aspect of asexual reproduction.

  11. Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica

    PubMed Central

    Nishimura, Osamu; Hosoda, Kazutaka; Kawaguchi, Eri; Yazawa, Shigenobu; Hayashi, Tetsutaro; Inoue, Takeshi; Umesono, Yoshihiko; Agata, Kiyokazu

    2015-01-01

    We established a laboratory clonal strain of freshwater planarian (Dugesia japonica) that was derived from a single individual and that continued to undergo autotomous asexual reproduction for more than 20 years, and we performed large-scale genome sequencing and transcriptome analysis on it. Despite the fact that a completely clonal strain of the planarian was used, an unusually large number of mutations were detected. To enable quantitative genetic analysis of such a unique organism, we developed a new model called the Reference Gene Model, and used it to conduct large-scale transcriptome analysis. The results revealed large numbers of mutations not only outside but also inside gene-coding regions. Non-synonymous SNPs were detected in 74% of the genes for which valid ORFs were predicted. Interestingly, the high-mutation genes, such as metabolism- and defense-related genes, were correlated with genes that were previously identified as diverse genes among different planarian species. Although a large number of amino acid substitutions were apparently accumulated during asexual reproduction over this long period of time, the planarian maintained normal body-shape, behaviors, and physiological functions. The results of the present study reveal a unique aspect of asexual reproduction. PMID:26588467

  12. Scaling of heat flux and energy spectrum for very large Prandtl number convection.

    PubMed

    Pandey, Ambrish; Verma, Mahendra K; Mishra, Pankaj K

    2014-02-01

    Under the limit of infinite Prandtl number, we derive analytical expressions for the large-scale quantities, e.g., Péclet number Pe, Nusselt number Nu, and rms value of the temperature fluctuations θ(rms). We complement the analytical work with direct numerical simulations, and show that Nu ∼ Ra(γ) with γ ≈ (0.30-0.32), Pe ∼ Ra(η) with η ≈ (0.57-0.61), and θ(rms) ∼ const. The Nusselt number is observed to be an intricate function of Pe, θ(rms), and a correlation function between the vertical velocity and temperature. Using the scaling of large-scale fields, we show that the energy spectrum E(u)(k) ∼ k(-13/3), which is in a very good agreement with our numerical results. The entropy spectrum E(θ)(k), however, exhibits dual branches consisting of k(-2) and k(0) spectra; the k(-2) branch corresponds to the Fourier modes θ[over ̂](0,0,2n), which are approximately -1/(2 nπ). The scaling relations for Prandtl number beyond 10(2) match with those for infinite Prandtl number.

  13. Large Chern-number topological superfluids in a coupled-layer system

    NASA Astrophysics Data System (ADS)

    Huang, Beibing; Chan, Chun Fai; Gong, Ming

    2015-04-01

    Large Chern-number topological phase is always an important topic in modern physics. Here we investigate the topological superfluids in a coupled-layer system, in which transitions between different topological superfluids can be realized by controlling the binding energy, interlayer tunneling, and layer asymmetry, etc. These topological transitions are characterized by energy gap closing and reopening at the critical points at zero momentum, where the Chern number and sign of Pfaffian undergo a discontinuous change. Topological protected edge modes at the boundaries are ensured by the bulk-edge correspondence. In a trapped potential the edge modes are spatially localized at the interfaces between distinct topological superfluids, where the number of edge modes is equal to the Chern-number difference between the left and right superfluids. These topological transitions can be detected by spin texture at or near zero momentum, which changes discretely across the critical points due to band inversion. The model can be generalized to a multilayer system in which the Chern number can be equal to any positive integer. These large Chern-number topological superfluids provide fertile grounds for exploring exotic quantum matters in the context of ultracold atoms.

  14. Indirect interband transition induced by optical near fields with large wave numbers

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Maiku; Nobusada, Katsuyuki

    2016-05-01

    Optical near fields (ONFs) have Fourier components with large wave numbers that are two or three orders of magnitude larger than those of far-field propagating light owing to their nonuniformity in space. By utilizing these large wave numbers, the ONF is expected to induce an indirect interband transition between Bloch states having different wave numbers and directly generate an electron-hole pair without electron-phonon coupling. We perform time-dependent dynamics calculations of a one-dimensional periodic potential with an indirect band-gap structure and demonstrate that the ONF definitely induces an indirect interband transition. Instead of using the general Bloch boundary condition, which is usually imposed in conventional band structure calculations, we adopt an alternative boundary condition, the Born-von Kármán boundary condition, to appropriately treat indirect interband transitions. The calculated absorption spectra for the far-field and ONF excitations show different absorption edges and spectral patterns. We argue that this difference can be experimentally measured as evidence of the effects of the large wave numbers of the ONF.

  15. Large deviations of the shifted index number in the Gaussian ensemble

    NASA Astrophysics Data System (ADS)

    Pérez Castillo, Isaac

    2016-06-01

    We show that, using the Coulomb fluid approach, we are able to derive a rate function \\Psi(c,x) of two variables that captures: (i) the large deviations of bulk eigenvalues; (ii) the large deviations of extreme eigenvalues (both left and right large deviations); (iii) the statistics of the fraction c of eigenvalues to the left of a position x. Thus, \\Psi(c,x) explains the full order statistics of the eigenvalues of large random Gaussian matrices as well as the statistics of the shifted index number. All our analytical findings are thoroughly compared with Monte Carlo simulations, obtaining excellent agreement. A summary of preliminary results has already been presented in Pérez Castillo (2014 Phys. Rev. E 90 040102) in the context of one-dimensional trapped spinless fermions in a harmonic potential.

  16. The cost of large numbers of hypothesis tests on power, effect size and sample size.

    PubMed

    Lazzeroni, L C; Ray, A

    2012-01-01

    Advances in high-throughput biology and computer science are driving an exponential increase in the number of hypothesis tests in genomics and other scientific disciplines. Studies using current genotyping platforms frequently include a million or more tests. In addition to the monetary cost, this increase imposes a statistical cost owing to the multiple testing corrections needed to avoid large numbers of false-positive results. To safeguard against the resulting loss of power, some have suggested sample sizes on the order of tens of thousands that can be impractical for many diseases or may lower the quality of phenotypic measurements. This study examines the relationship between the number of tests on the one hand and power, detectable effect size or required sample size on the other. We show that once the number of tests is large, power can be maintained at a constant level, with comparatively small increases in the effect size or sample size. For example at the 0.05 significance level, a 13% increase in sample size is needed to maintain 80% power for ten million tests compared with one million tests, whereas a 70% increase in sample size is needed for 10 tests compared with a single test. Relative costs are less when measured by increases in the detectable effect size. We provide an interactive Excel calculator to compute power, effect size or sample size when comparing study designs or genome platforms involving different numbers of hypothesis tests. The results are reassuring in an era of extreme multiple testing.

  17. Prospectus: towards the development of high-fidelity models of wall turbulence at large Reynolds number

    NASA Astrophysics Data System (ADS)

    Klewicki, J. C.; Chini, G. P.; Gibson, J. F.

    2017-03-01

    Recent and on-going advances in mathematical methods and analysis techniques, coupled with the experimental and computational capacity to capture detailed flow structure at increasingly large Reynolds numbers, afford an unprecedented opportunity to develop realistic models of high Reynolds number turbulent wall-flow dynamics. A distinctive attribute of this new generation of models is their grounding in the Navier-Stokes equations. By adhering to this challenging constraint, high-fidelity models ultimately can be developed that not only predict flow properties at high Reynolds numbers, but that possess a mathematical structure that faithfully captures the underlying flow physics. These first-principles models are needed, for example, to reliably manipulate flow behaviours at extreme Reynolds numbers. This theme issue of Philosophical Transactions of the Royal Society A provides a selection of contributions from the community of researchers who are working towards the development of such models. Broadly speaking, the research topics represented herein report on dynamical structure, mechanisms and transport; scale interactions and self-similarity; model reductions that restrict nonlinear interactions; and modern asymptotic theories. In this prospectus, the challenges associated with modelling turbulent wall-flows at large Reynolds numbers are briefly outlined, and the connections between the contributing papers are highlighted.

  18. Active optics in Large Synoptic Survey Telescope

    NASA Astrophysics Data System (ADS)

    Liang, Ming; Krabbendam, Victor; Claver, Charles F.; Chandrasekharan, Srinivasan; Xin, Bo

    2012-09-01

    The Large Synoptic Survey Telescope (LSST) has a 3.5º field of view and F/1.2 focus that makes the performance quite sensitive to the perturbations of misalignments and mirror surface deformations. In order to maintain the image quality, LSST has an active optics system (AOS) to measure and correct those perturbations in a closed loop. The perturbed wavefront errors are measured by the wavefront sensors (WFS) located at the four corners of the focal plane. The perturbations are solved by the non-linear least square algorithm by minimizing the rms variation of the measured and baseline designed wavefront errors. Then the correction is realized by applying the inverse of the perturbations to the optical system. In this paper, we will describe the correction processing in the LSST AOS. We also will discuss the application of the algorithm, the properties of the sensitivity matrix and the stabilities of the correction. A simulation model, using ZEMAX as a ray tracing engine and MATLAB as an analysis platform, is set up to simulate the testing and correction loop of the LSST AOS. Several simulation examples and results are presented.

  19. Topological superconductor with a large Chern number and a large bulk excitation gap in single-layer graphene

    NASA Astrophysics Data System (ADS)

    Wang, L.; Wu, M. W.

    2016-02-01

    We show that a two-dimensional topological superconductor (TSC) can be realized in a hybrid system with a conventional s -wave superconductor proximity coupled to a quantum anomalous Hall (QAH) state from the Rashba and exchange effects in single-layer graphene. With very low or even zero doping near the Dirac points, i.e., two inequivalent valleys, this TSC has a Chern number as large as 4, which supports four Majorana edge modes. More importantly, we show that this TSC has a robust topologically nontrivial bulk excitation gap, which can be larger or even 1 order of magnitude larger than the proximity-induced superconducting gap. This unique property paves a way for the application of QAH insulators as seed materials to realize robust TSCs and Majorana modes.

  20. Wave propagation in randomly stratified media and the law of large numbers

    NASA Astrophysics Data System (ADS)

    Kotulski, Z.

    1992-10-01

    The propagation of scalar harmonic waves through a randomly stratified slab is investigated. The transition matrix method is applied for the analysis of the problem. To obtain the effective parameters of the material of the slab the law of large numbers for non-commuting products is applied. The results are illustrated with the numerical example of the propagation of elastic waves in steel-titanium laminate in an aluminium environment.

  1. Phase retrieval from a single near-field diffraction pattern with a large Fresnel number.

    PubMed

    Li, Enrong; Liu, Yijin; Liu, Xiaosong; Zhang, Kai; Wang, Zhili; Hong, Youli; Yuan, Qingxi; Huang, Wanxia; Marcelli, Augusto; Zhu, Peiping; Wu, Ziyu

    2008-11-01

    A new method of phase retrieval from a single near-field diffraction image with a large Fresnel number is presented and discussed. This method requires only the oversampled diffraction pattern without any other information such as the object envelope. Moreover, we show that the combination with a fast computational method is possible when the linear oversampling ratio is an integer. Numerical simulations are also presented, showing that the method works well with noisy data.

  2. Filament actuation by an active colloid at low Reynolds number

    NASA Astrophysics Data System (ADS)

    Laskar, Abhrajit; Adhikari, R.

    2017-03-01

    Active colloids and externally actuated semi-flexible filaments provide basic building blocks for designing autonomously motile micro-machines. Here, we show that a passive semi-flexible filament can be actuated and transported by attaching an active colloid to its terminus. We study the dynamics of this assembly when it is free, tethered, or clamped using overdamped equations of motion that explicitly account for active fluid flow and the forces it mediates. Linear states are destabilised by buckling instabilities to produce stable states of non-zero curvature and writhe. We demarcate boundaries of these states in the two-dimensional parameter space representing dimensionless measures of polar and apolar activity. Our proposed assembly can be used as a novel component in the design of micro-machines at low Reynolds number and to study elastic instabilities driven by ‘follower’ forces.

  3. An autostereoscopic display with high resolution and large number of view zones

    NASA Astrophysics Data System (ADS)

    Chen, Wu-Li; Hsu, Wei-Liang; Tsai, Chao-Hsu; Wang, Chy-Lin; Wu, Chang-Shuo; Yang, Jinn-Cherng; Cheng, Shu-Chuan

    2008-02-01

    For a spatial-multiplexed 3D display, trade-off between resolution and number of view-zones are usually unavoidable due to the limited number of pixels on the screen. In this paper, we present a new autostereoscopic system, named as "integrated-screen system," to substantially increase the total number of pixels on the screen, which in turn increase both the resolution and number of view-zones. In the integrated-screen system, a large number of mini-projectors are arrayed and the images are tiled together without seams in between. For displaying 3D images, the lenticular screen with predesigned tilted angle is used for distributing different viewing zones. In order to achieve good performance, we design a brand-new projector with special lens set to meet the low-distortion requirement because the distortion of the image will induce serious crosstalk between view-zones. The proposed system has two advantages. One is the extensibility of the screen size. The size of the display can be chosen based on the applications we deal with, including the size of the projected pixel and the number of viewing zones. The other advantage is that the integrated-screen system provides projected pixels in great density to solve the major problem of the poor resolution that a lenticular-type 3D display has.

  4. Thermocapillary Migration of Deformable Bubbles at Moderate to Large Marangoni Number in Microgravity

    NASA Astrophysics Data System (ADS)

    Zhao, Jian-Fu; Li, Zhen-Dong; Li, Hui-Xiong; Li, Jing

    2010-09-01

    Using the level-set method and the continuum interface model, the axisymmetric thermocapillary migration of gas bubbles in an immiscible bulk liquid with a temperature gradient at moderate to large Marangoni number is simulated numerically. Constant material properties of the two phases are assumed. Steady state of the motion can always be reached. The terminal migration velocity decreases monotonously with the increase of the Marangoni number due to the wrapping of isotherms around the front surface of the bubble. Good agreements with space experimental data and previous theoretical and numerical studies in the literature are evident. Slight deformation of bubble is observed, but no distinct influence on the motion occurs. It is also found that the influence of the convective transport of heat inside bubbles cannot be neglected at finite Marangoni number, while the influence of the convective transport of momentum inside bubbles may be actually negligible.

  5. Monitoring a large number of pesticides and transformation products in water samples from Spain and Italy.

    PubMed

    Rousis, Nikolaos I; Bade, Richard; Bijlsma, Lubertus; Zuccato, Ettore; Sancho, Juan V; Hernandez, Felix; Castiglioni, Sara

    2017-03-14

    Assessing the presence of pesticides in environmental waters is particularly challenging because of the huge number of substances used which may end up in the environment. Furthermore, the occurrence of pesticide transformation products (TPs) and/or metabolites makes this task even harder. Most studies dealing with the determination of pesticides in water include only a small number of analytes and in many cases no TPs. The present study applied a screening method for the determination of a large number of pesticides and TPs in wastewater (WW) and surface water (SW) from Spain and Italy. Liquid chromatography coupled to high-resolution mass spectrometry (HRMS) was used to screen a database of 450 pesticides and TPs. Detection and identification were based on specific criteria, i.e. mass accuracy, fragmentation, and comparison of retention times when reference standards were available, or a retention time prediction model when standards were not available. Seventeen pesticides and TPs from different classes (fungicides, herbicides and insecticides) were found in WW in Italy and Spain, and twelve in SW. Generally, in both countries more compounds were detected in effluent WW than in influent WW, and in SW than WW. This might be due to the analytical sensitivity in the different matrices, but also to the presence of multiple sources of pollution. HRMS proved a good screening tool to determine a large number of substances in water and identify some priority compounds for further quantitative analysis.

  6. Large-scale multielectrode recording and stimulation of neural activity

    NASA Astrophysics Data System (ADS)

    Sher, A.; Chichilnisky, E. J.; Dabrowski, W.; Grillo, A. A.; Grivich, M.; Gunning, D.; Hottowy, P.; Kachiguine, S.; Litke, A. M.; Mathieson, K.; Petrusca, D.

    2007-09-01

    Large circuits of neurons are employed by the brain to encode and process information. How this encoding and processing is carried out is one of the central questions in neuroscience. Since individual neurons communicate with each other through electrical signals (action potentials), the recording of neural activity with arrays of extracellular electrodes is uniquely suited for the investigation of this question. Such recordings provide the combination of the best spatial (individual neurons) and temporal (individual action-potentials) resolutions compared to other large-scale imaging methods. Electrical stimulation of neural activity in turn has two very important applications: it enhances our understanding of neural circuits by allowing active interactions with them, and it is a basis for a large variety of neural prosthetic devices. Until recently, the state-of-the-art in neural activity recording systems consisted of several dozen electrodes with inter-electrode spacing ranging from tens to hundreds of microns. Using silicon microstrip detector expertise acquired in the field of high-energy physics, we created a unique neural activity readout and stimulation framework that consists of high-density electrode arrays, multi-channel custom-designed integrated circuits, a data acquisition system, and data-processing software. Using this framework we developed a number of neural readout and stimulation systems: (1) a 512-electrode system for recording the simultaneous activity of as many as hundreds of neurons, (2) a 61-electrode system for electrical stimulation and readout of neural activity in retinas and brain-tissue slices, and (3) a system with telemetry capabilities for recording neural activity in the intact brain of awake, naturally behaving animals. We will report on these systems, their various applications to the field of neurobiology, and novel scientific results obtained with some of them. We will also outline future directions.

  7. XCAN project : coherent beam combining of large number fibers in femtosecond regime (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Antier, Marie; Le Dortz, Jeremy; Bourderionnet, Jerome; Larat, Christian; Lallier, Eric; Daniault, Louis; Fsaifes, Ihsan; Heilmann, Anke; Bellanger, Severine; Simon-Boisson, Christophe; Chanteloup, Jean-Christophe; Brignon, Arnaud

    2016-10-01

    The XCAN project, which is a three years project and began in 2015, carried out by Thales and the Ecole Polytechnique aims at developing a laser system based on the coherent combination of laser beams produced through a network of amplifying optical fibers. This technique provides an attractive mean of reaching simultaneously the high peak and high average powers required for various industrial, scientific and defense applications. The architecture has to be compatible with very large number of fibers (1000-10000). The goal of XCAN is to overcome all the key scientific and technological barriers to the design and development of an experimental laser demonstrator. The coherent addition of multiple individual phased beams is aimed to provide tens of Gigawatt peak power at 50 kHz repetition rate. Coherent beam combining (CBC) of fiber amplifiers involves a master oscillator which is split into N fiber channels and then amplified through series of polarization maintaining fiber pre-amplifiers and amplifiers. In the so-called tiled aperture configuration, the N fibers are arranged in an array and collimated in the near field of the laser output. The N beamlets then interfere constructively in the far field, and give a bright central lobe. CBC techniques with active phase locking involve phase mismatch detection, calculation of the correction and phase compensation of each amplifier by means of phase modulators. Interferometric phase measurement has proven to be particularly well suited to phase-lock a very large number of fibers in continuous regime. A small fraction of the N beamlets is imaged onto a camera. The beamlets interfere separately with a reference beam. The phase mismatch of each beam is then calculated from the interferences' position. In this presentation, we demonstrate the phase locking of 19 fibers in femtosecond pulse regime with this technique. In our first experiment, a master oscillator generates pulses of 300 fs (chirped at 200 ps). The beam is

  8. The 3 K blackbody radiation, Dirac's Large Numbers Hypothesis, and scale-covariant cosmology

    NASA Technical Reports Server (NTRS)

    Canuto, V.; Hsieh, S.-H.

    1978-01-01

    A program is described which is intended to derive a generalized system of gravitational equations that allow (but do not require) G to vary, to use the 3-K blackbody radiation to fix the relation between G and the gauge function, and to employ Dirac's (1937) Large Numbers Hypothesis to derive the geometry of the universe. Einstein's equations are retained in their total integrity, but the specification is made that they are valid only when gravitational units are used. A scale-invariant form of Einstein's equations is obtained, and from this are derived the energy conservation law, the baryon-number conservation law, and the appropriate cosmological equations. Dirac's proposals of 1937 and 1973 are incorporated into the formalism, and a gauge based on consolidation of the 3-K blackbody radiation is presented. A unique solution for the geometry of the universe is determined for zero curvature solely from the 3-K radiation and the Large Numbers Hypothesis; this solution predicts a deceleration parameter exactly equal to unity.

  9. The genus Drosophila is characterized by a large number of sibling species showing evolutionary significance.

    PubMed

    Singh, Bashisth N

    2016-12-01

    Mayr (1942) defined sibling species as sympatric forms which are morphologically very similar or indistinguishable, but which possess specific biological characteristics and are reproductively isolated. Another term, cryptic species has also been used for such species. However, this concept changed later. Sibling species are as similar as twins. This category does not necessarily include phylogenetic siblings as members of a superspecies. Since the term sibling species was defined by Mayr, a large number of cases of sibling species pairs/groups have been reported and thus they are widespread in the animal kingdom. However, they seem to be more common in some groups such as insects. In insects, they have been reported in diptera, lepidoptera, coleoptera, orthoptera, hymenoptera and others. Sibling species are widespread among the dipteran insects and as such are well studied because some species are important medically (mosquitoes), genetically (Drosophila) and cytologically (Sciara and Chironomus). The well-studied classical pairs of sibling species in Drosophila are: D. pseudoobscura and D. persimilis, and D. melanogaster and D. simulans. Subsequently, a number of sibling species have been added to these pairs and a large number of other sibling species pairs/groups in different species groups of the genus Drosophila have been reported in literature. The present review briefly summarizes the cases of sibling species pairs/groups in the genus Drosophila with their evolutionary significance.

  10. Measuring effective radium concentration with large numbers of samples. Part II--general properties and representativity.

    PubMed

    Girault, Frédéric; Perrier, Frédéric

    2012-11-01

    Effective radium concentration EC(Ra), product of radium concentration and radon emanation, is the source term for radon release into the pore space of rocks and the environment. Over a period of three years, we performed more than 6000 radon-222 accumulation experiments in the laboratory with scintillation flasks and SSNTDs and we obtained experimental EC(Ra) values from more than 1570 rock and soil samples. With this method, which allowed the measurement of EC(Ra) from large numbers of samples with sufficient accuracy and uncertainty, as detailed in the companion paper, the dependence of the emanation factor on temperature and moisture content is revisited. In addition, with such a large EC(Ra) dataset, dispersion of EC(Ra) can be studied at sample-scale (cm to dm) and at scarp-scale (m to tens of m). Furthermore, we are able to discuss the representativity of obtained EC(Ra) values at field-scale, and to investigate the spatial variations of EC(Ra) over kilometric scales, within geological formations and across formations and faults. This experimental study opens new perspectives in the understanding of radium geochemistry and illustrates the importance of studying the radon source term with large numbers of samples for the modelling of geological and environmental processes, and also for the assessment of the radon health hazard.

  11. Analogue algorithm for parallel factorization of an exponential number of large integers: I. Theoretical description

    NASA Astrophysics Data System (ADS)

    Tamma, Vincenzo

    2016-12-01

    We describe a novel analogue algorithm that allows the simultaneous factorization of an exponential number of large integers with a polynomial number of experimental runs. It is the interference-induced periodicity of "factoring" interferograms measured at the output of an analogue computer that allows the selection of the factors of each integer. At the present stage, the algorithm manifests an exponential scaling which may be overcome by an extension of this method to correlated qubits emerging from n-order quantum correlations measurements. We describe the conditions for a generic physical system to compute such an analogue algorithm. A particular example given by an "optical computer" based on optical interference will be addressed in the second paper of this series (Tamma in Quantum Inf Process 11128:1189, 2015).

  12. Estimating the effective Reynolds number in implicit large-eddy simulation.

    PubMed

    Zhou, Ye; Grinstein, Fernando F; Wachtor, Adam J; Haines, Brian M

    2014-01-01

    In implicit large-eddy simulation (ILES), energy-containing large scales are resolved, and physics capturing numerics are used to spatially filter out unresolved scales and to implicitly model subgrid scale effects. From an applied perspective, it is highly desirable to estimate a characteristic Reynolds number (Re)-and therefore a relevant effective viscosity-so that the impact of resolution on predicted flow quantities and their macroscopic convergence can usefully be characterized. We argue in favor of obtaining robust Re estimates away from the smallest scales of the simulated flow-where numerically controlled dissipation takes place and propose a theoretical basis and framework to determine such measures. ILES examples include forced turbulence as a steady flow case, the Taylor-Green vortex to address transition and decaying turbulence, and simulations of a laser-driven reshock experiment illustrating a fairly complex turbulence problem of current practical interest.

  13. Impact factors for Reggeon-gluon transition in N=4 SYM with large number of colours

    NASA Astrophysics Data System (ADS)

    Fadin, V. S.; Fiore, R.

    2014-06-01

    We calculate impact factors for Reggeon-gluon transition in supersymmetric Yang-Mills theory with four supercharges at large number of colours Nc. In the next-to-leading order impact factors are not uniquely defined and must accord with BFKL kernels and energy scales. We obtain the impact factor corresponding to the kernel and the energy evolution parameter, which is invariant under Möbius transformation in momentum space, and show that it is also Möbius invariant up to terms taken into account in the BDS ansatz.

  14. Diffractive imaging at large Fresnel number: Challenge of dynamic mesoscale imaging with hard x rays

    NASA Astrophysics Data System (ADS)

    Barber, John L.; Barnes, Cris W.; Sandberg, Richard L.; Sheffield, Richard L.

    2014-05-01

    Real materials have structure at both the atomic or crystalline scale as well as at interfaces and defects at the larger scale of grains. There is a need for the study of materials at the "mesoscale," the scale at which subgranular physical processes and intergranular organization couple to determine microstructure, crucially impacting constitutive response at the engineering macroscale. Diffractive imaging using photons that can penetrate multiple grains of material would be a transformative technique for the study of the performance of materials in dynamic extremes. Thicker samples imply higher energy photons of shorter wavelength, and imaging of multiple grains implies bigger spot sizes. Such imaging requires the use of future planned and proposed hard x-ray free electron lasers (such as the European XFEL) to provide both the spatial coherence transverse to the large spots and the peak brilliance to provide the short illumination times. The result is that the Fresnel number of the system becomes large and is no longer in the Fraunhofer far-field limit. The interrelated issues of diffractive imaging at large Fresnel number are analyzed, including proof that diffractive imaging is possible in this limit and estimates of the signal-to-noise possible. In addition, derivation of the heating rates for brilliant pulses of x rays are presented. The potential and limitations on multiple dynamic images are derived. This paper will present a study of x-ray interactions with materials in this new regime of spatially coherent but relatively large mesoscale spots at very hard energies. It should provide the theory and design background for the experiments and facilities required to control materials in extreme environments, in particular for the next generation of very-hard-x-ray free electron lasers.

  15. Design and test of a natural laminar flow/large Reynolds number airfoil with a high design cruise lift coefficient

    NASA Technical Reports Server (NTRS)

    Kolesar, C. E.

    1987-01-01

    Research activity on an airfoil designed for a large airplane capable of very long endurance times at a low Mach number of 0.22 is examined. Airplane mission objectives and design optimization resulted in requirements for a very high design lift coefficient and a large amount of laminar flow at high Reynolds number to increase the lift/drag ratio and reduce the loiter lift coefficient. Natural laminar flow was selected instead of distributed mechanical suction for the measurement technique. A design lift coefficient of 1.5 was identified as the highest which could be achieved with a large extent of laminar flow. A single element airfoil was designed using an inverse boundary layer solution and inverse airfoil design computer codes to create an airfoil section that would achieve performance goals. The design process and results, including airfoil shape, pressure distributions, and aerodynamic characteristics are presented. A two dimensional wind tunnel model was constructed and tested in a NASA Low Turbulence Pressure Tunnel which enabled testing at full scale design Reynolds number. A comparison is made between theoretical and measured results to establish accuracy and quality of the airfoil design technique.

  16. A top-down model to generate ensembles of runoff from a large number of hillslopes

    NASA Astrophysics Data System (ADS)

    Furey, P. R.; Gupta, V. K.; Troutman, B. M.

    2013-09-01

    We hypothesize that total hillslope water loss for a rainfall-runoff event is inversely related to a function of a lognormal random variable, based on basin- and point-scale observations taken from the 21 km2 Goodwin Creek Experimental Watershed (GCEW) in Mississippi, USA. A top-down approach is used to develop a new runoff generation model both to test our physical-statistical hypothesis and to provide a method of generating ensembles of runoff from a large number of hillslopes in a basin. The model is based on the assumption that the probability distributions of a runoff/loss ratio have a space-time rescaling property. We test this assumption using streamflow and rainfall data from GCEW. For over 100 rainfall-runoff events, we find that the spatial probability distributions of a runoff/loss ratio can be rescaled to a new distribution that is common to all events. We interpret random within-event differences in runoff/loss ratios in the model to arise from soil moisture spatial variability. Observations of water loss during events in GCEW support this interpretation. Our model preserves water balance in a mean statistical sense and supports our hypothesis. As an example, we use the model to generate ensembles of runoff at a large number of hillslopes for a rainfall-runoff event in GCEW.

  17. Automated 3D trajectory measuring of large numbers of moving particles.

    PubMed

    Wu, Hai Shan; Zhao, Qi; Zou, Danping; Chen, Yan Qiu

    2011-04-11

    Complex dynamics of natural particle systems, such as insect swarms, bird flocks, fish schools, has attracted great attention of scientists for years. Measuring 3D trajectory of each individual in a group is vital for quantitative study of their dynamic properties, yet such empirical data is rare mainly due to the challenges of maintaining the identities of large numbers of individuals with similar visual features and frequent occlusions. We here present an automatic and efficient algorithm to track 3D motion trajectories of large numbers of moving particles using two video cameras. Our method solves this problem by formulating it as three linear assignment problems (LAP). For each video sequence, the first LAP obtains 2D tracks of moving targets and is able to maintain target identities in the presence of occlusions; the second one matches the visually similar targets across two views via a novel technique named maximum epipolar co-motion length (MECL), which is not only able to effectively reduce matching ambiguity but also further diminish the influence of frequent occlusions; the last one links 3D track segments into complete trajectories via computing a globally optimal assignment based on temporal and kinematic cues. Experiment results on simulated particle swarms with various particle densities validated the accuracy and robustness of the proposed method. As real-world case, our method successfully acquired 3D flight paths of fruit fly (Drosophila melanogaster) group comprising hundreds of freely flying individuals.

  18. Superposition of elliptic functions as solutions for a large number of nonlinear equations

    NASA Astrophysics Data System (ADS)

    Khare, Avinash; Saxena, Avadh

    2014-03-01

    For a large number of nonlinear equations, both discrete and continuum, we demonstrate a kind of linear superposition. We show that whenever a nonlinear equation admits solutions in terms of both Jacobi elliptic functions cn(x, m) and dn(x, m) with modulus m, then it also admits solutions in terms of their sum as well as difference. We have checked this in the case of several nonlinear equations such as the nonlinear Schrödinger equation, MKdV, a mixed KdV-MKdV system, a mixed quadratic-cubic nonlinear Schrödinger equation, the Ablowitz-Ladik equation, the saturable nonlinear Schrödinger equation, λϕ4, the discrete MKdV as well as for several coupled field equations. Further, for a large number of nonlinear equations, we show that whenever a nonlinear equation admits a periodic solution in terms of dn2(x, m), it also admits solutions in terms of dn^2(x,m) ± sqrt{m} cn(x,m) dn(x,m), even though cn(x, m)dn(x, m) is not a solution of these nonlinear equations. Finally, we also obtain superposed solutions of various forms for several coupled nonlinear equations.

  19. A novel method to accurately locate and count large numbers of steps by photobleaching

    PubMed Central

    Tsekouras, Konstantinos; Custer, Thomas C.; Jashnsaz, Hossein; Walter, Nils G.; Pressé, Steve

    2016-01-01

    Photobleaching event counting is a single-molecule fluorescence technique that is increasingly being used to determine the stoichiometry of protein and RNA complexes composed of many subunits in vivo as well as in vitro. By tagging protein or RNA subunits with fluorophores, activating them, and subsequently observing as the fluorophores photobleach, one obtains information on the number of subunits in a complex. The noise properties in a photobleaching time trace depend on the number of active fluorescent subunits. Thus, as fluorophores stochastically photobleach, noise properties of the time trace change stochastically, and these varying noise properties have created a challenge in identifying photobleaching steps in a time trace. Although photobleaching steps are often detected by eye, this method only works for high individual fluorophore emission signal-to-noise ratios and small numbers of fluorophores. With filtering methods or currently available algorithms, it is possible to reliably identify photobleaching steps for up to 20–30 fluorophores and signal-to-noise ratios down to ∼1. Here we present a new Bayesian method of counting steps in photobleaching time traces that takes into account stochastic noise variation in addition to complications such as overlapping photobleaching events that may arise from fluorophore interactions, as well as on-off blinking. Our method is capable of detecting ≥50 photobleaching steps even for signal-to-noise ratios as low as 0.1, can find up to ≥500 steps for more favorable noise profiles, and is computationally inexpensive. PMID:27654946

  20. Methods to produce and safely work with large numbers of Toxoplasma gondii oocysts and bradyzoite cysts

    PubMed Central

    Fritz, H.; Barr, B.; Packham, A.; Melli, A.; Conrad, P.A.

    2012-01-01

    Two major obstacles to conducting studies with Toxoplasma gondii oocysts are the difficulty in reliably producing large numbers of this life stage and safety concerns because the oocyst is the most environmentally resistant stage of this zoonotic organism. Oocyst production requires oral infection of the definitive feline host with adequate numbers of T. gondii organisms to obtain unsporulated oocysts that are shed in the feces for 3-10 days after infection. Since the most successful and common mode of experimental infection of kittens with T. gondii is by ingestion of bradyzoite tissue cysts, the first step in successful oocyst production is to ensure a high bradyzoite tissue cyst burden in the brains of mice that can be used for the oral inoculum. We compared two methods for producing bradyzoite brain cysts in mice, by infecting them either orally or subcutaneously with oocysts. In both cases, oocysts derived from a low passage T. gondii Type II strain (M4) were used to infect eight-ten week-old Swiss Webster mice. First the number of bradyzoite cysts that were purified from infected mouse brains was compared. Then to evaluate the effect of the route of oocyst inoculation on tissue cyst distribution in mice, a second group of mice was infected with oocysts by one of each route and tissues were examined by histology. In separate experiments, brains from infected mice were used to infect kittens for oocyst production. Greater than 1.3 billion oocysts were isolated from the feces of two infected kittens in the first production and greater than 1.8 billion oocysts from three kittens in the second production. Our results demonstrate that oral delivery of oocysts to mice results in both higher cyst loads in the brain and greater cyst burdens in other tissues examined as compared to those of mice that received the same number of oocysts subcutaneously. The ultimate goal in producing large numbers of oocysts in kittens is to generate adequate amounts of starting material

  1. Methods to produce and safely work with large numbers of Toxoplasma gondii oocysts and bradyzoite cysts.

    PubMed

    Fritz, H; Barr, B; Packham, A; Melli, A; Conrad, P A

    2012-01-01

    Two major obstacles to conducting studies with Toxoplasma gondii oocysts are the difficulty in reliably producing large numbers of this life stage and safety concerns because the oocyst is the most environmentally resistant stage of this zoonotic organism. Oocyst production requires oral infection of the definitive feline host with adequate numbers of T. gondii organisms to obtain unsporulated oocysts that are shed in the feces for 3-10 days after infection. Since the most successful and common mode of experimental infection of kittens with T. gondii is by ingestion of bradyzoite tissue cysts, the first step in successful oocyst production is to ensure a high bradyzoite tissue cyst burden in the brains of mice that can be used for the oral inoculum. We compared two methods for producing bradyzoite brain cysts in mice, by infecting them either orally or subcutaneously with oocysts. In both cases, oocysts derived from a low passage T. gondii Type II strain (M4) were used to infect eight-ten week-old Swiss Webster mice. First the number of bradyzoite cysts that were purified from infected mouse brains was compared. Then to evaluate the effect of the route of oocyst inoculation on tissue cyst distribution in mice, a second group of mice was infected with oocysts by one of each route and tissues were examined by histology. In separate experiments, brains from infected mice were used to infect kittens for oocyst production. Greater than 1.3 billion oocysts were isolated from the feces of two infected kittens in the first production and greater than 1.8 billion oocysts from three kittens in the second production. Our results demonstrate that oral delivery of oocysts to mice results in both higher cyst loads in the brain and greater cyst burdens in other tissues examined as compared to those of mice that received the same number of oocysts subcutaneously. The ultimate goal in producing large numbers of oocysts in kittens is to generate adequate amounts of starting material

  2. Large-eddy simulations of impinging jets at high Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Wu, Wen; Piomelli, Ugo

    2013-11-01

    We have performed large-eddy simulations of an impinging jet with embedded azimuthal vortices. We used a hybrid approach in which the near-wall layer is modelled using the RANS equations with the Spalart-Allmaras model, while away from the wall Lagrangian-averaged dynamic eddy-viscosity modelled LES is used. This method allowed us to reach Reynolds numbers that would be prohibitively expensive for wall-resolving LES. First, we compared the results of the hybrid calculation with a wall-resolved one at moderate Reynolds number, Re = 66 , 000 (based on jet diameter and velocity). The mean velocity and Reynolds stresses were in good agreement between the simulations, and, in particular, the generation of secondary vorticity at the wall and its liftup were captured well. The simulation cost was reduced by 86%. We then carried out simulations at Re = 266 , 000 and 1.3 million. The effect of Reynolds number on vortex development will be discussed. Canada Research Chair in Computational Turbulence, HPCVL-Sun Microsystems Chair in Computational Science and Engineering.

  3. Laws of Large Numbers and Langevin Approximations for Stochastic Neural Field Equations

    PubMed Central

    2013-01-01

    In this study, we consider limit theorems for microscopic stochastic models of neural fields. We show that the Wilson–Cowan equation can be obtained as the limit in uniform convergence on compacts in probability for a sequence of microscopic models when the number of neuron populations distributed in space and the number of neurons per population tend to infinity. This result also allows to obtain limits for qualitatively different stochastic convergence concepts, e.g., convergence in the mean. Further, we present a central limit theorem for the martingale part of the microscopic models which, suitably re-scaled, converges to a centred Gaussian process with independent increments. These two results provide the basis for presenting the neural field Langevin equation, a stochastic differential equation taking values in a Hilbert space, which is the infinite-dimensional analogue of the chemical Langevin equation in the present setting. On a technical level, we apply recently developed law of large numbers and central limit theorems for piecewise deterministic processes taking values in Hilbert spaces to a master equation formulation of stochastic neuronal network models. These theorems are valid for processes taking values in Hilbert spaces, and by this are able to incorporate spatial structures of the underlying model. Mathematics Subject Classification (2000): 60F05, 60J25, 60J75, 92C20. PMID:23343328

  4. Support for the involvement of large copy number variants in the pathogenesis of schizophrenia.

    PubMed

    Kirov, George; Grozeva, Detelina; Norton, Nadine; Ivanov, Dobril; Mantripragada, Kiran K; Holmans, Peter; Craddock, Nick; Owen, Michael J; O'Donovan, Michael C

    2009-04-15

    We investigated the involvement of rare (<1%) copy number variants (CNVs) in 471 cases of schizophrenia and 2792 controls that had been genotyped using the Affymetrix GeneChip 500K Mapping Array. Large CNVs >1 Mb were 2.26 times more common in cases (P = 0.00027), with the effect coming mostly from deletions (odds ratio, OR = 4.53, P = 0.00013) although duplications were also more common (OR = 1.71, P = 0.04). Two large deletions were found in two cases each, but in no controls: a deletion at 22q11.2 known to be a susceptibility factor for schizophrenia and a deletion on 17p12, at 14.0-15.4 Mb. The latter is known to cause hereditary neuropathy with liability to pressure palsies. The same deletion was found in 6 of 4618 (0.13%) cases and 6 of 36 092 (0.017%) controls in the re-analysed data of two recent large CNV studies of schizophrenia (OR = 7.82, P = 0.001), with the combined significance level for all three studies achieving P = 5 x 10(-5). One large duplication on 16p13.1, which has been previously implicated as a susceptibility factor for autism, was found in three cases and six controls (0.6% versus 0.2%, OR = 2.98, P = 0.13). We also provide the first support for a recently reported association between deletions at 15q11.2 and schizophrenia (P = 0.026). This study confirms the involvement of rare CNVs in the pathogenesis of schizophrenia and contributes to the growing list of specific CNVs that are implicated.

  5. Reynolds number dependence of large-scale friction control in turbulent channel flow

    NASA Astrophysics Data System (ADS)

    Canton, Jacopo; Örlü, Ramis; Chin, Cheng; Schlatter, Philipp

    2016-12-01

    The present work investigates the effectiveness of the control strategy introduced by Schoppa and Hussain [Phys. Fluids 10, 1049 (1998), 10.1063/1.869789] as a function of Reynolds number (Re). The skin-friction drag reduction method proposed by these authors, consisting of streamwise-invariant, counter-rotating vortices, was analyzed by Canton et al. [Flow, Turbul. Combust. 97, 811 (2016), 10.1007/s10494-016-9723-8] in turbulent channel flows for friction Reynolds numbers (Reτ) corresponding to the value of the original study (i.e., 104) and 180. For these Re, a slightly modified version of the method proved to be successful and was capable of providing a drag reduction of up to 18%. The present study analyzes the Reynolds number dependence of this drag-reducing strategy by performing two sets of direct numerical simulations (DNS) for Reτ=360 and 550. A detailed analysis of the method as a function of the control parameters (amplitude and wavelength) and Re confirms, on the one hand, the effectiveness of the large-scale vortices at low Re and, on the other hand, the decreasing and finally vanishing effectiveness of this method for higher Re. In particular, no drag reduction can be achieved for Reτ=550 for any combination of the parameters controlling the vortices. For low Reynolds numbers, the large-scale vortices are able to affect the near-wall cycle and alter the wall-shear-stress distribution to cause an overall drag reduction effect, in accordance with most control strategies. For higher Re, instead, the present method fails to penetrate the near-wall region and cannot induce the spanwise velocity variation observed in other more established control strategies, which focus on the near-wall cycle. Despite the negative outcome, the present results demonstrate the shortcomings of the control strategy and show that future focus should be on methods that directly target the near-wall region or other suitable alternatives.

  6. Solar effects on circulation types over Europe: an analysis based on a large number of classifications

    NASA Astrophysics Data System (ADS)

    Huth, R.; Cahynová, M.; Kyselý, J.

    2010-09-01

    Recently, effects of the 11-year solar cycle on various aspects of tropospheric circulation in the Northern Hemisphere in winter have been recognized. One of our previous studies showed a significant solar effect on the frequency of synoptic types from the Hess-Brezowsky catalogue. Here, we use a large collection of varied classifications of circulation patterns, defined over central Europe, assembled within the COST733 Action "Harmonization and Applications of Weather Types Classifications for European Regions" to detect the solar effect on the frequency of synoptic types. The advantage of this multi-classification approach is that peculiarities or biases present in any single classification (catalogue) that might influence the detected solar signal are eliminated once a large ensemble of classifications is used. We divide winter months (December to March) into three groups according to the mean monthly solar activity, quantified by the solar 10.7 cm flux. The three groups correspond to the minima of the 11-year solar cycle, a moderate solar activity, and solar maxima. Within each group, frequencies of occurrence of individual circulation types are calculated. Differences in the occurrence of individual classes between solar activity groups indicate the presence of a solar activity effect on atmospheric circulation over Europe. Statistical significance of these differences is estimated by a block resampling method. An enhanced frequency under solar minima and a reduced frequency under solar maxima are observed almost exclusively for the types with easterly flow over central Europe. On the other hand, a reduced frequency under solar minima and an enhanced frequency under solar maxima are found for the types with westerly flow over central Europe. The research is supported by the Grant Agency of the Czech Academy of Sciences, project A300420805, and by the Ministry of Education, Youth, and Sports of the Czech Republic, contract OC115.

  7. Properties of sound attenuation around a two-dimensional underwater vehicle with a large cavitation number

    NASA Astrophysics Data System (ADS)

    Ye, Peng-Cheng; Pan, Guang

    2015-06-01

    Due to the high speed of underwater vehicles, cavitation is generated inevitably along with the sound attenuation when the sound signal traverses through the cavity region around the underwater vehicle. The linear wave propagation is studied to obtain the influence of bubbly liquid on the acoustic wave propagation in the cavity region. The sound attenuation coefficient and the sound speed formula of the bubbly liquid are presented. Based on the sound attenuation coefficients with various vapor volume fractions, the attenuation of sound intensity is calculated under large cavitation number conditions. The result shows that the sound intensity attenuation is fairly small in a certain condition. Consequently, the intensity attenuation can be neglected in engineering. Project supported by the National Natural Science Foundation of China (Grant Nos. 51279165 and 51479170) and the National Defense Basic Scientific Research Program of China (Grant No. B2720133014).

  8. Inclined layer convection in a colloidal suspension with negative Soret coefficient at large solutal Rayleigh numbers.

    PubMed

    Italia, Matteo; Croccolo, Fabrizio; Scheffold, Frank; Vailati, Alberto

    2014-10-01

    Convection in an inclined layer of fluid is affected by the presence of a component of the acceleration of gravity perpendicular to the density gradient that drives the convective motion. In this work we investigate the solutal convection of a colloidal suspension characterized by a negative Soret coefficient. Convection is induced by heating the suspension from above, and at large solutal Rayleigh numbers (of the order of 10(7)-10(8)) convective spoke patterns form. We show that in the presence of a marginal inclination of the cell as small as 19 mrad the isotropy of the spoke pattern is broken and the convective patterns tend to align in the direction of the inclination. At intermediate inclinations of the order of 33 mrad ordered square patterns are obtained, while at inclination of the order of 67 mrad the strong shear flow determined by the inclination gives rise to ascending and descending sheets of fluid aligned parallel to the direction of inclination.

  9. Variation of froude number with discharge for large-gradient steams

    USGS Publications Warehouse

    Wahl, Kenneth L.; ,

    1993-01-01

    Under chemical-control conditions, the Froude number (f) for a cross-section can be approximated as a function of the ratio R2/ 3/d 1/2 , where R is the hydraulic radius and d is the average depth. For cross sections where the ratio increases with increasing depth, F can also increase with depth Current-meter measurement data for 433 streamflow gaging stations in Colorado were reviewed, and 62 stations were identified at which F increases with depth of flow. Data for four streamflow gaging stations are presented. In some cases, F approaches 1 as the discharge approaches the magnitude of the median annual peak discharge. The data also indicate that few actual current meter measurement have been made at the large discharges where velocities can be supercritical.

  10. Large Deviation Function for the Number of Eigenvalues of Sparse Random Graphs Inside an Interval

    NASA Astrophysics Data System (ADS)

    Metz, Fernando L.; Pérez Castillo, Isaac

    2016-09-01

    We present a general method to obtain the exact rate function Ψ[a ,b ](k ) controlling the large deviation probability Prob[IN[a ,b ]=k N ]≍e-N Ψ[a ,b ](k ) that an N ×N sparse random matrix has IN[a ,b ]=k N eigenvalues inside the interval [a ,b ]. The method is applied to study the eigenvalue statistics in two distinct examples: (i) the shifted index number of eigenvalues for an ensemble of Erdös-Rényi graphs and (ii) the number of eigenvalues within a bounded region of the spectrum for the Anderson model on regular random graphs. A salient feature of the rate function in both cases is that, unlike rotationally invariant random matrices, it is asymmetric with respect to its minimum. The asymmetric character depends on the disorder in a way that is compatible with the distinct eigenvalue statistics corresponding to localized and delocalized eigenstates. The results also show that the level compressibility κ2/κ1 for the Anderson model on a regular graph satisfies 0 <κ2/κ1<1 in the bulk regime, in contrast with the behavior found in Gaussian random matrices. Our theoretical findings are thoroughly compared to numerical diagonalization in both cases, showing a reasonable good agreement.

  11. Large Deviation Function for the Number of Eigenvalues of Sparse Random Graphs Inside an Interval.

    PubMed

    Metz, Fernando L; Pérez Castillo, Isaac

    2016-09-02

    We present a general method to obtain the exact rate function Ψ_{[a,b]}(k) controlling the large deviation probability Prob[I_{N}[a,b]=kN]≍e^{-NΨ_{[a,b]}(k)} that an N×N sparse random matrix has I_{N}[a,b]=kN eigenvalues inside the interval [a,b]. The method is applied to study the eigenvalue statistics in two distinct examples: (i) the shifted index number of eigenvalues for an ensemble of Erdös-Rényi graphs and (ii) the number of eigenvalues within a bounded region of the spectrum for the Anderson model on regular random graphs. A salient feature of the rate function in both cases is that, unlike rotationally invariant random matrices, it is asymmetric with respect to its minimum. The asymmetric character depends on the disorder in a way that is compatible with the distinct eigenvalue statistics corresponding to localized and delocalized eigenstates. The results also show that the level compressibility κ_{2}/κ_{1} for the Anderson model on a regular graph satisfies 0<κ_{2}/κ_{1}<1 in the bulk regime, in contrast with the behavior found in Gaussian random matrices. Our theoretical findings are thoroughly compared to numerical diagonalization in both cases, showing a reasonable good agreement.

  12. Cosmonumerology, Cosmophysics, and the Large Numbers Hypothesis: British Cosmology in the 1930s

    NASA Astrophysics Data System (ADS)

    Durham, Ian

    2001-04-01

    A number of unorthodox cosmological models were developed in the 1930s, many by British theoreticians. Three of the most notable of these theories included Eddington's cosmonumerology, Milne's cosmophysics, and Dirac's large numbers hypothesis (LNH). Dirac's LNH was based partly on the other two and it has been argued that modern steady-state theories are based partly on Milne's cosmophysics. But what influenced Eddington and Milne? Both were products of the late Victorian education system in Britain and could conceivably have been influenced by Victorian thought which, in addition to its strict (though technically unoffical) social caste system, had a flair for the unusual. Victorianism was filled with a fascination for the occult and the supernatural, and science was not insulated from this trend (witness the Henry Slade trial in 1877). It is conceivable that the normally strict mentality of the scientific process in the minds of Eddington and Milne was affected, indirectly, by this trend for the unusual, possibly pushing them into thinking "outside the box" as it were. In addition, cosmonumerology and the LNH exhibit signs of Pythagorean and Aristotelian thought. It is the aim of this ongoing project at St. Andrews to determine the influences and characterize the relations existing in and within these and related theories.

  13. Conflict of Interest Policies for Organizations Producing a Large Number of Clinical Practice Guidelines

    PubMed Central

    Norris, Susan L.; Holmer, Haley K.; Burda, Brittany U.; Ogden, Lauren A.; Fu, Rongwei

    2012-01-01

    Background Conflict of interest (COI) of clinical practice guideline (CPG) sponsors and authors is an important potential source of bias in CPG development. The objectives of this study were to describe the COI policies for organizations currently producing a significant number of CPGs, and to determine if these policies meet 2011 Institute of Medicine (IOM) standards. Methodology/Principal Findings We identified organizations with five or more guidelines listed in the National Guideline Clearinghouse between January 1, 2009 and November 5, 2010. We obtained the COI policy for each organization from publicly accessible sources, most often the organization's website, and compared those polices to IOM standards related to COI. 37 organizations fulfilled our inclusion criteria, of which 17 (46%) had a COI policy directly related to CPGs. These COI policies varied widely with respect to types of COI addressed, from whom disclosures were collected, monetary thresholds for disclosure, approaches to management, and updating requirements. Not one organization's policy adhered to all seven of the IOM standards that were examined, and nine organizations did not meet a single one of the standards. Conclusions/Significance COI policies among organizations producing a large number of CPGs currently do not measure up to IOM standards related to COI disclosure and management. CPG developers need to make significant improvements in these policies and their implementation in order to optimize the quality and credibility of their guidelines. PMID:22629391

  14. A New Approach to Reduce Number of Split Fields in Large Field IMRT

    SciTech Connect

    Lee, Chen-Chiao; Wu, Andrew; Garg, Madhur; Mutyala, Subhakar; Kalnicki, Shalom; Sayed, Gary; Mah, Dennis

    2011-04-01

    Intensity-modulated radiation therapy (IMRT) has been applied for treatments of primary head with neck nodes, lung with supraclavicular nodes, and high-risk prostate cancer with pelvis wall nodes, all of which require large fields. However, the design of the Varian multileaf collimator requires fields >14 cm in width to be split into 2 or more carriage movements. With the split-field technique, both the number of monitor units (MUs) and total treatment time are significantly increased. Although many different approaches have been investigated to reduce the MU, including introducing new leaf segmentation algorithms, none have resulted in widespread success. In addition, for most clinics, writing such algorithms is not a feasible solution, particularly with commercial treatment planning systems. We introduce a new approach that can minimize the number of split fields and reduce the total MUs, thereby reducing treatment time. The technique is demonstrated on the Eclipse planning system V7.3, but could be generalized to any other system.

  15. A new approach to reduce number of split fields in large field IMRT.

    PubMed

    Lee, Chen-Chiao; Wu, Andrew; Garg, Madhur; Mutyala, Subhakar; Kalnicki, Shalom; Sayed, Gary; Mah, Dennis

    2011-01-01

    Intensity-modulated radiation therapy (IMRT) has been applied for treatments of primary head with neck nodes, lung with supraclavicular nodes, and high-risk prostate cancer with pelvis wall nodes, all of which require large fields. However, the design of the Varian multileaf collimator requires fields >14 cm in width to be split into 2 or more carriage movements. With the split-field technique, both the number of monitor units (MUs) and total treatment time are significantly increased. Although many different approaches have been investigated to reduce the MU, including introducing new leaf segmentation algorithms, none have resulted in widespread success. In addition, for most clinics, writing such algorithms is not a feasible solution, particularly with commercial treatment planning systems. We introduce a new approach that can minimize the number of split fields and reduce the total MUs, thereby reducing treatment time. The technique is demonstrated on the Eclipse planning system V7.3, but could be generalized to any other system.

  16. MHC variability supports dog domestication from a large number of wolves: high diversity in Asia.

    PubMed

    Niskanen, A K; Hagström, E; Lohi, H; Ruokonen, M; Esparza-Salas, R; Aspi, J; Savolainen, P

    2013-01-01

    The process of dog domestication is still somewhat unresolved. Earlier studies indicate that domestic dogs from all over the world have a common origin in Asia. So far, major histocompatibility complex (MHC) diversity has not been studied in detail in Asian dogs, although high levels of genetic diversity are expected at the domestication locality. We sequenced the second exon of the canine MHC gene DLA-DRB1 from 128 Asian dogs and compared our data with a previously published large data set of MHC alleles, mostly from European dogs. Our results show that Asian dogs have a higher MHC diversity than European dogs. We also estimated that there is only a small probability that new alleles have arisen by mutation since domestication. Based on the assumption that all of the currently known 102 DLA-DRB1 alleles come from the founding wolf population, we simulated the number of founding wolf individuals. Our simulations indicate an effective population size of at least 500 founding wolves, suggesting that the founding wolf population was large or that backcrossing has taken place.

  17. Large eddy simulation of the FDA benchmark nozzle for a Reynolds number of 6500.

    PubMed

    Janiga, Gábor

    2014-04-01

    This work investigates the flow in a benchmark nozzle model of an idealized medical device proposed by the FDA using computational fluid dynamics (CFD). It was in particular shown that a proper modeling of the transitional flow features is particularly challenging, leading to large discrepancies and inaccurate predictions from the different research groups using Reynolds-averaged Navier-Stokes (RANS) modeling. In spite of the relatively simple, axisymmetric computational geometry, the resulting turbulent flow is fairly complex and non-axisymmetric, in particular due to the sudden expansion. The resulting flow cannot be well predicted with simple modeling approaches. Due to the varying diameters and flow velocities encountered in the nozzle, different typical flow regions and regimes can be distinguished, from laminar to transitional and to weakly turbulent. The purpose of the present work is to re-examine the FDA-CFD benchmark nozzle model at a Reynolds number of 6500 using large eddy simulation (LES). The LES results are compared with published experimental data obtained by Particle Image Velocimetry (PIV) and an excellent agreement can be observed considering the temporally averaged flow velocities. Different flow regimes are characterized by computing the temporal energy spectra at different locations along the main axis.

  18. Using large clinical data sets to infer pathogenicity for rare copy number variants in autism cohorts

    PubMed Central

    Moreno-De-Luca, D; Sanders, S J; Willsey, A J; Mulle, J G; Lowe, J K; Geschwind, D H; State, M W; Martin, C L; Ledbetter, D H

    2013-01-01

    Copy number variants (CNVs) have a major role in the etiology of autism spectrum disorders (ASD), and several of these have reached statistical significance in case–control analyses. Nevertheless, current ASD cohorts are not large enough to detect very rare CNVs that may be causative or contributory (that is, risk alleles). Here, we use a tiered approach, in which clinically significant CNVs are first identified in large clinical cohorts of neurodevelopmental disorders (including but not specific to ASD), after which these CNVs are then systematically identified within well-characterized ASD cohorts. We focused our initial analysis on 48 recurrent CNVs (segmental duplication-mediated ‘hotspots') from 24 loci in 31 516 published clinical cases with neurodevelopmental disorders and 13 696 published controls, which yielded a total of 19 deletion CNVs and 11 duplication CNVs that reached statistical significance. We then investigated the overlap of these 30 CNVs in a combined sample of 3955 well-characterized ASD cases from three published studies. We identified 73 deleterious recurrent CNVs, including 36 deletions from 11 loci and 37 duplications from seven loci, for a frequency of 1 in 54; had we considered the ASD cohorts alone, only 58 CNVs from eight loci (24 deletions from three loci and 34 duplications from five loci) would have reached statistical significance. In conclusion, until there are sufficiently large ASD research cohorts with enough power to detect very rare causative or contributory CNVs, data from larger clinical cohorts can be used to infer the likely clinical significance of CNVs in ASD. PMID:23044707

  19. Exploring the Effects of Large Networks on Evolution in Low Mach Number Flows

    NASA Astrophysics Data System (ADS)

    Orvedahl, Ryan; Zingale, M.; Almgren, A.; Bell, J.; Nonaka, A.

    2013-01-01

    Many phenomena in Astrophysics are largely subsonic and require special techniques for long-time integration. MAESTRO is a low Mach number stellar hydrodynamics code that can be used to simulate long-time, low-speed flows that would be extremely time consuming using traditional compressible codes. MAESTRO filters sound waves while retaining both local and large-scale compressibility which gives increased accuracy and efficiency. In this project we describe the results of applying MAESTRO to thermonuclear flames (thin propagating thermonuclear fusion fronts) as well as the convective layer of a nova. The nova is a carbon-oxygen white dwarf with a hydrogen-helium envelope in tight hydrostatic equilibrium. As the envelope increases in mass, the pressure and temperature increase at the base of the accreted layer. When the pressure and temperature are sufficiently high, nuclear fusion (burning) occurs. To capture this burning, MAESTRO models multiple species using the mass density of the fluid and the mass fraction of the species. A typical MAESTRO carbon burning reaction network only carries 3 species; C12, O16 and Mg24. We present the results of combining the extensive reaction network of the Modules for Experiments in Stellar Astrophysics (MESA) code with the MAESTRO code. MESA provides various values including atomic mass and atomic weight for over 5400 isotopes. We apply these large networks to study the dynamics of the convective layer in the nova as well as the dynamics of thermonuclear flames. This work was supported in part by a DOE/Office of Nuclear Physics grant No. DE-FG02-06ER41448 to Stony Brook.

  20. Porous medium convection at large Rayleigh number: Studies of coherent structure, transport, and reduced dynamics

    NASA Astrophysics Data System (ADS)

    Wen, Baole

    Buoyancy-driven convection in fluid-saturated porous media is a key environmental and technological process, with applications ranging from carbon dioxide storage in terrestrial aquifers to the design of compact heat exchangers. Porous medium convection is also a paradigm for forced-dissipative infinite-dimensional dynamical systems, exhibiting spatiotemporally chaotic dynamics if not "true" turbulence. The objective of this dissertation research is to quantitatively characterize the dynamics and heat transport in two-dimensional horizontal and inclined porous medium convection between isothermal plane parallel boundaries at asymptotically large values of the Rayleigh number Ra by investigating the emergent, quasi-coherent flow. This investigation employs a complement of direct numerical simulations (DNS), secondary stability and dynamical systems theory, and variational analysis. The DNS confirm the remarkable tendency for the interior flow to self-organize into closely-spaced columnar plumes at sufficiently large Ra (up to Ra ≃ 105), with more complex spatiotemporal features being confined to boundary layers near the heated and cooled walls. The relatively simple form of the interior flow motivates investigation of unstable steady and time-periodic convective states at large Ra as a function of the domain aspect ratio L. To gain insight into the development of spatiotemporally chaotic convection, the (secondary) stability of these fully nonlinear states to small-amplitude disturbances is investigated using a spatial Floquet analysis. The results indicate that there exist two distinct modes of instability at large Ra: a bulk instability mode and a wall instability mode. The former usually is excited by long-wavelength disturbances and is generally much weaker than the latter. DNS, strategically initialized to investigate the fully nonlinear evolution of the most dangerous secondary instability modes, suggest that the (long time) mean inter-plume spacing in

  1. HPC-Colony: Services and Interfaces to Aupport Systems With Very Large Numbers of Processors

    SciTech Connect

    Jones, T; Kale, L; Moreira, J; Mendes, C; Chakravorty, S; Tauferner, A; Inglett, T

    2007-01-31

    The HPC-Colony Project, a collaboration with Lawrence Livermore National Laboratory, the University of Illinois at Urbana-Champaign and IBM, is focused on services and interfaces for very large numbers of processors. Advances in parallel systems in the last decade have delivered phenomenal progress in the overall capability available to a single parallel application. Several systems with peak capability of over 100TF are already available and systems are expected to exceed 1PF within a few years. Despite these impressive advances in peak performance capability, the sustained performance of these systems continues to fall as a percentage of the peak capability. Initial analysis suggests that key architectural bottlenecks (in hardware and software) are responsible for the lower sustained performance and some architectural change of direction may be necessary to address the declining sustained performance. In this proposal we focus on addressing software architectural bottlenecks, in the areas of operating system and runtime systems. While the trend towards larger processor counts benefits application developers through more processing power, it also challenges application developers to harness ever-increasing numbers of processors for productive work. Much of the burden falls to operating systems and runtime systems that were originally designed for much smaller processor counts. Under the Colony project, we are researching and developing system software to enable general purpose operating and runtime systems for tens of thousands of processors. Difficulties in achieving a balanced partitioning and dynamically scheduling workloads can limit scaling for complex problems on large machines. Scientific simulations that span components of large machines require common operating system services, such as process scheduling, event notification, and job management to scale to large machines. Today, application programmers must explicitly manage these resources. We address

  2. The 3D MHD code GOEMHD3 for astrophysical plasmas with large Reynolds numbers. Code description, verification, and computational performance

    NASA Astrophysics Data System (ADS)

    Skála, J.; Baruffa, F.; Büchner, J.; Rampp, M.

    2015-08-01

    efficiently with the number of processors up to tens of thousands of CPU cores. This excellent scalability of the code was obtained by simulating the 3D evolution of the solar corona above an active region (NOAA AR1249) for which GOEMHD3 revealed the energy distribution in the solar atmosphere in response to the energy influx from the chromosphere through the transition region, taking into account the weak Joule current dissipation and viscosity in the almost dissipationless solar corona. Conclusions: The new massively parallel simulation code GOEMHD3 enables efficient and fast simulations of almost ideal astrophysical plasma flows with large Reynolds numbers well resolved and on huge grids covering large domains. Its abilities are verified by comprehensive set of tests of ideal and weakly dissipative plasma phenomena. The high-resolution (20483 grid points) simulation of a large part of the solar corona above an observed active region proves the excellent parallel scalability of the code up to more than 30 000 processor cores. A movie associated to Fig. 21 is available in electronic form at http://www.aanda.org

  3. Dynamics of Active Separation Control at High Reynolds Numbers

    NASA Technical Reports Server (NTRS)

    Pack, LaTunia G.; Seifert, Avi

    2000-01-01

    A series of active flow control experiments were recently conducted at high Reynolds numbers on a generic separated configuration. The model simulates the upper surface of a 20% thick Glauert-Goldschmied type airfoil at zero angle of attack. The flow is fully turbulent since the tunnel sidewall boundary layer flows over the model. The main motivation for the experiments is to generate a comprehensive data base for validation of unsteady numerical simulation as a first step in the development of a CFD design tool, without which it would not be possible to effectively utilize the great potential of unsteady flow control. This paper focuses on the dynamics of several key features of the baseline as well as the controlled flow. It was found that the thickness of the upstream boundary layer has a negligible effect on the flow dynamics. It is speculated that separation is caused mainly by the highly convex surface while viscous effects are less important. The two-dimensional separated flow contains unsteady waves centered on a reduced frequency of 0.8, while in the three dimensional separated flow, frequencies around a reduced frequency of 0.3 and 1 are active. Several scenarios of resonant wave interaction take place at the separated shear-layer and in the pressure recovery region. The unstable reduced frequency bands for periodic excitation are centered on 1.5 and 5, but these reduced frequencies are based on the length of the baseline bubble that shortens due to the excitation. The conventional swept wing-scaling works well for the coherent wave features. Reproduction of these dynamic effects by a numerical simulation would provide benchmark validation.

  4. Ecological specialization and rarity indices estimated for a large number of plant species in France.

    PubMed

    Mobaied, Samira; Machon, Nathalie; Porcher, Emmanuelle

    2015-06-01

    The biological diversity of the Earth is being rapidly depleted due to the direct and indirect consequences of human activities. Specialist or rare species are generally thought to be more extinction prone than generalist or common species. Testing this assumption however requires that the rarity and ecological specialization of the species are quantified. Many indices have been developed to classify species as generalists vs. specialists or as rare vs. common, but large data sets are needed to calculate these indices. Here, we present a list of specialization and rarity values for more than 2800 plant species of continental France, which were computed from the large botanical and ecological dataset SOPHY. Three specialization indices were calculated using species co-occurrence data. All three indices are based on (dis)similarity among plant communities containing a focal species, quantified either as beta diversity in an additive (Fridley et al., 2007 [6]) or multiplicative (Zeleny, 2008 [15]) partitioning of diversity or as the multiple site similarity of Baselga et al. (2007) [1]. Species rarity was calculated as the inverse of a species occurrence.

  5. Ecological specialization and rarity indices estimated for a large number of plant species in France

    PubMed Central

    Mobaied, Samira; Machon, Nathalie; Porcher, Emmanuelle

    2015-01-01

    The biological diversity of the Earth is being rapidly depleted due to the direct and indirect consequences of human activities. Specialist or rare species are generally thought to be more extinction prone than generalist or common species. Testing this assumption however requires that the rarity and ecological specialization of the species are quantified. Many indices have been developed to classify species as generalists vs. specialists or as rare vs. common, but large data sets are needed to calculate these indices. Here, we present a list of specialization and rarity values for more than 2800 plant species of continental France, which were computed from the large botanical and ecological dataset SOPHY. Three specialization indices were calculated using species co-occurrence data. All three indices are based on (dis)similarity among plant communities containing a focal species, quantified either as beta diversity in an additive (Fridley et al., 2007 [6]) or multiplicative (Zeleny, 2008 [15]) partitioning of diversity or as the multiple site similarity of Baselga et al. (2007) [1]. Species rarity was calculated as the inverse of a species occurrence. PMID:26217738

  6. Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology.

    PubMed

    Imamura, Yuya; Haruta, Miwa; Tomita, Yusuke; Matsumura, Keiko; Ikeda, Tokunori; Yuno, Akira; Hirayama, Masatoshi; Nakayama, Hideki; Mizuta, Hiroshi; Nishimura, Yasuharu; Senju, Satoru

    2016-01-01

    We previously reported a method to expand human monocytes through lentivirus-mediated introduction of cMYC and BMI1, and we named the monocyte-derived proliferating cells, CD14-ML. CD14-ML differentiated into functional DC (CD14-ML-DC) upon addition of IL-4, resulting in the generation of a large number of DC. One drawback of this method was the extensive donor-dependent variation in proliferation efficiency. In the current study, we found that introduction of BCL2 or LYL1 along with cMYC and BMI1 was beneficial. Using the improved method, we obtained CD14-ML from all samples, regardless of whether the donors were healthy individuals or cancer patients. In vitro stimulation of peripheral blood T cells with CD14-ML-DC that were loaded with cancer antigen-derived peptides led to the establishment of CD4+ and CD8+ T cell lines that recognized the peptides. Since CD14-ML was propagated for more than 1 month, we could readily conduct genetic modification experiments. To generate CD14-ML-DC that expressed antigenic proteins, we introduced lentiviral antigen-expression vectors and subjected the cells to 2 weeks of culture for drug-selection and expansion. The resulting antigen-expressing CD14-ML-DC successfully induced CD8+ T cell lines that were reactive to CMVpp65 or MART1/MelanA, suggesting an application in vaccination therapy. Thus, this improved method enables the generation of a sufficient number of DC for vaccination therapy from a small amount of peripheral blood from cancer patients. Information on T cell epitopes is not necessary in vaccination with cancer antigen-expressing CD14-ML-DC; therefore, all patients, irrespective of HLA type, will benefit from anti-cancer therapy based on this technology.

  7. Laboratory astrophysics using differential rotation of unmagnetized plasma at large magnetic Reynolds number

    NASA Astrophysics Data System (ADS)

    Weisberg, David

    2016-10-01

    Differentially rotating plasma flow has been measured in the Madison Plasma Dynamo Experiment (MPDX). Spherical cusp-confined plasmas have been stirred both from the plasma boundary using electrostatic stirring in the magnetized edge and in the plasma core using weak global fields and cross-field currents to impose a body-force torque. Laminar velocity profiles conducive to shear-driven MHD instabilities like the dynamo and the MRI are now being generated and controlled with magnetic Reynolds numbers of Rm < 250 and fluid Reynolds numbers of Re < 200 . The measured plasma confinement contradicts existing theories for magnetic cusp confinement, and a new quasi-1D ambipolar diffusion model is presented to explain measurements of cusp loss widths that do not fit the classic hybrid gyroradius theory. Emissive electrode discharge is shown to be an efficient method for plasma heating, but limits on input heating power have been observed (believed to be caused by the formation of double-layers at anodes). These confinement studies have culminated in large (R = 1.4 m), warm (Te < 20 eV), dense (ne < 5 ×1018 m-3), unmagnetized (MA > 1), steady-state plasmas. Results of the ambipolar transport model are good fits to measurements of pressure gradients and fluid drifts in the cusp, and offer a predictive tool for future cusp-confined devices. Hydrodynamic modeling is shown to be a good description for measured plasma flows, where ion viscosity proves to be an efficient mechanism for transporting momentum from the magnetized edge into the unmagnetized core. In addition, the body-force stirring technique produces velocity profiles conducive to MRI experiments where dΩ / dr < 0 . Measured values of Rm and Re are significantly higher than previous flow experiments in cusp-confined plasmas, setting the stage for future progress in laboratory research of flow-driven astrophysical MHD instabilities.

  8. Generation of Large Numbers of Antigen-Expressing Human Dendritic Cells Using CD14-ML Technology

    PubMed Central

    Imamura, Yuya; Haruta, Miwa; Tomita, Yusuke; Matsumura, Keiko; Ikeda, Tokunori; Yuno, Akira; Hirayama, Masatoshi; Nakayama, Hideki; Mizuta, Hiroshi; Nishimura, Yasuharu; Senju, Satoru

    2016-01-01

    We previously reported a method to expand human monocytes through lentivirus-mediated introduction of cMYC and BMI1, and we named the monocyte-derived proliferating cells, CD14-ML. CD14-ML differentiated into functional DC (CD14-ML-DC) upon addition of IL-4, resulting in the generation of a large number of DC. One drawback of this method was the extensive donor-dependent variation in proliferation efficiency. In the current study, we found that introduction of BCL2 or LYL1 along with cMYC and BMI1 was beneficial. Using the improved method, we obtained CD14-ML from all samples, regardless of whether the donors were healthy individuals or cancer patients. In vitro stimulation of peripheral blood T cells with CD14-ML-DC that were loaded with cancer antigen-derived peptides led to the establishment of CD4+ and CD8+ T cell lines that recognized the peptides. Since CD14-ML was propagated for more than 1 month, we could readily conduct genetic modification experiments. To generate CD14-ML-DC that expressed antigenic proteins, we introduced lentiviral antigen-expression vectors and subjected the cells to 2 weeks of culture for drug-selection and expansion. The resulting antigen-expressing CD14-ML-DC successfully induced CD8+ T cell lines that were reactive to CMVpp65 or MART1/MelanA, suggesting an application in vaccination therapy. Thus, this improved method enables the generation of a sufficient number of DC for vaccination therapy from a small amount of peripheral blood from cancer patients. Information on T cell epitopes is not necessary in vaccination with cancer antigen-expressing CD14-ML-DC; therefore, all patients, irrespective of HLA type, will benefit from anti-cancer therapy based on this technology. PMID:27050553

  9. Large-Actuator-Number Horizontal Path Correction of Atmospheric Turbulence utilizing an Interferometric Phase Conjugate Engine

    SciTech Connect

    Baker, K L; Stappaerts, E A; Gavel, D; Tucker, J; Silva, D A; Wilks, S C; Olivier, S S; Olsen, J

    2004-08-25

    An adaptive optical system used to correct horizontal beam propagation paths has been demonstrated. This system utilizes an interferometric wave-front sensor and a large-actuator-number MEMS-based spatial light modulator to correct the aberrations incurred by the beam after propagation along the path. Horizontal path correction presents a severe challenge to adaptive optics systems due to the short atmospheric transverse coherence length and the high degree of scintillation incurred by laser propagation along these paths. Unlike wave-front sensors that detect phase gradients, however, the interferometric wave-front sensor measures the wrapped phase directly. Because the system operates with nearly monochromatic light and uses a segmented spatial light modulator, it does not require that the phase be unwrapped to provide a correction and it also does not require a global reconstruction of the wave-front to determine the phase as required by gradient detecting wave-front sensors. As a result, issues with branch points are eliminated. Because the atmospheric probe beam is mixed with a large amplitude reference beam, it can be made to operate in a photon noise limited regime making its performance relatively unaffected by scintillation. The MEMS-based spatial light modulator in the system contains 1024 pixels and is controlled to speeds in excess of 800 Hz, enabling its use for correction of horizontal path beam propagation. In this article results are shown of both atmospheric characterization with the system and open loop horizontal path correction of a 1.53 micron laser by the system. To date Strehl ratios of greater than 0.5 have been achieved.

  10. Atoms and quantum dots with a large number of electrons: The ground-state energy

    SciTech Connect

    Kunz, Herve; Rueedi, Rico

    2010-03-15

    We compute the ground-state energy of atoms and quantum dots with a large number N of electrons. Both systems are described by a nonrelativistic Hamiltonian of electrons in a d-dimensional space. The electrons interact via the Coulomb potential. In the case of atoms (d=3), the electrons are attracted by the nucleus via the Coulomb potential. In the case of quantum dots (d=2), the electrons are confined by an external potential, whose shape can be varied. We show that the dominant terms of the ground-state energy are those given by a semiclassical Hartree-exchange energy, whose N{yields}{infinity} limit corresponds to Thomas-Fermi theory. This semiclassical Hartree-exchange theory creates oscillations in the ground-state energy as a function of N. These oscillations reflect the dynamics of a classical particle moving in the presence of the Thomas-Fermi potential. The dynamics is regular for atoms and some dots, but in general in the case of dots, the motion contains a chaotic component. We compute the correlation effects. They appear at the order NlnN for atoms, in agreement with available data. For dots, they appear at the order N.

  11. An evidential approach to problem solving when a large number of knowledge systems is available

    NASA Technical Reports Server (NTRS)

    Dekorvin, Andre

    1989-01-01

    Some recent problems are no longer formulated in terms of imprecise facts, missing data or inadequate measuring devices. Instead, questions pertaining to knowledge and information itself arise and can be phrased independently of any particular area of knowledge. The problem considered in the present work is how to model a problem solver that is trying to find the answer to some query. The problem solver has access to a large number of knowledge systems that specialize in diverse features. In this context, feature means an indicator of what the possibilities for the answer are. The knowledge systems should not be accessed more than once, in order to have truly independent sources of information. Moreover, these systems are allowed to run in parallel. Since access might be expensive, it is necessary to construct a management policy for accessing these knowledge systems. To help in the access policy, some control knowledge systems are available. Control knowledge systems have knowledge about the performance parameters status of the knowledge systems. In order to carry out the double goal of estimating what units to access and to answer the given query, diverse pieces of evidence must be fused. The Dempster-Shafer Theory of Evidence is used to pool the knowledge bases.

  12. Large ν - \\overline{ν} oscillations from high-dimensional lepton number violating operator

    NASA Astrophysics Data System (ADS)

    Geng, Chao-Qiang; Huang, Da

    2017-03-01

    It is usually believed that the observation of the neutrino-antineutrino ( ν - \\overline{ν} ) oscillations is almost impossible since the oscillation probabilities are expected to be greatly suppressed by the square of tiny ratio of neutrino masses to energies. Such an argument is applicable to most models for neutrino mass generation based on the Weinberg operator, including the seesaw models. However, in the present paper, we shall give a counterexample to this argument, and show that large ν - \\overline{ν} oscillation probabilities can be obtained in a class of models in which both neutrino masses and neutrinoless double beta (0 νββ) decays are induced by the high-dimensional lepton number violating operator O}_7={\\overline{u}}_R{l}_R^c{\\overline{L}}_L{H}^{\\ast }{d}_R+H.c. with u and d representing the first two generations of quarks. In particular, we find that the predicted 0 νββ decay rates have already placed interesting constraints on the {ν}_e\\leftrightarrow {\\overline{ν}}_e oscillation. Moreover, we provide an UV-complete model to realize this scenario, in which a dark matter candidate naturally appears due to the new U(1) d symmetry.

  13. Wall-modeled large-eddy simulation of transonic airfoil buffet at high Reynolds number

    NASA Astrophysics Data System (ADS)

    Fukushima, Yuma; Kawai, Soshi

    2016-11-01

    In this study, we conduct the wall-modeled large-eddy simulation (LES) of transonic buffet phenomena over the OAT15A supercritical airfoil at high Reynolds number. The transonic airfoil buffet involves shock-turbulent boundary layer interactions and shock vibration associated with the flow separation downstream of the shock wave. The wall-modeled LES developed by Kawai and Larsson PoF (2012) is tuned on the K supercomputer for high-fidelity simulation. We first show the capability of the present wall-modeled LES on the transonic airfoil buffet phenomena and then investigate the detailed flow physics of unsteadiness of shock waves and separated boundary layer interaction phenomena. We also focus on the sustaining mechanism of the buffet phenomena, including the source of the pressure waves propagated from the trailing edge and the interactions between the shock wave and the generated sound waves. This work was supported in part by MEXT as a social and scientific priority issue to be tackled by using post-K computer. Computer resources of the K computer was provided by the RIKEN Advanced Institute for Computational Science (Project ID: hp150254).

  14. Why are small and large numbers enumerated differently? A limited-capacity preattentive stage in vision.

    PubMed

    Trick, L M; Pylyshyn, Z W

    1994-01-01

    "Subitizing," the process of enumeration when there are fewer than 4 items, is rapid (40-100 ms/item), effortless, and accurate. "Counting," the process of enumeration when there are more than 4 items, is slow (250-350 ms/item), effortful, and error-prone. Why is there a difference in the way the small and large numbers of items are enumerated? A theory of enumeration is proposed that emerges from a general theory of vision, yet explains the numeric abilities of preverbal infants, children, and adults. We argue that subitizing exploits a limited-capacity parallel mechanism for item individuation, the FINST mechanism, associated with the multiple target tracking task (Pylyshyn, 1989; Pylyshyn & Storm, 1988). Two kinds of evidence support the claim that subitizing relies on preattentive information, whereas counting requires spatial attention. First, whenever spatial attention is needed to compute a spatial relation (cf. Ullman, 1984) or to perform feature integration (cf. Treisman & Gelade, 1980), subitizing does not occur (Trick & Pylyshyn, 1993a). Second, the position of the attentional focus, as manipulated by cue validity, has a greater effect on counting than subitizing latencies (Trick & Pylyshyn, 1993b).

  15. Dynamic non-equilibrium wall-modeling for large eddy simulation at high Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Kawai, Soshi; Larsson, Johan

    2013-01-01

    A dynamic non-equilibrium wall-model for large-eddy simulation at arbitrarily high Reynolds numbers is proposed and validated on equilibrium boundary layers and a non-equilibrium shock/boundary-layer interaction problem. The proposed method builds on the prior non-equilibrium wall-models of Balaras et al. [AIAA J. 34, 1111-1119 (1996)], 10.2514/3.13200 and Wang and Moin [Phys. Fluids 14, 2043-2051 (2002)], 10.1063/1.1476668: the failure of these wall-models to accurately predict the skin friction in equilibrium boundary layers is shown and analyzed, and an improved wall-model that solves this issue is proposed. The improvement stems directly from reasoning about how the turbulence length scale changes with wall distance in the inertial sublayer, the grid resolution, and the resolution-characteristics of numerical methods. The proposed model yields accurate resolved turbulence, both in terms of structure and statistics for both the equilibrium and non-equilibrium flows without the use of ad hoc corrections. Crucially, the model accurately predicts the skin friction, something that existing non-equilibrium wall-models fail to do robustly.

  16. Silent Students' Participation in a Large Active Learning Science Classroom

    ERIC Educational Resources Information Center

    Obenland, Carrie A.; Munson, Ashlyn H.; Hutchinson, John S.

    2012-01-01

    Active learning in large science classrooms furthers opportunities for students to engage in the content and in meaningful learning, yet students can still remain anonymously silent. This study aims to understand the impact of active learning on these silent students in a large General Chemistry course taught via Socratic questioning and…

  17. Controller certification: The generalized stability margin inference for a large number of MIMO controllers

    NASA Astrophysics Data System (ADS)

    Park, Jisang

    In this dissertation, we investigate MIMO stability margin inference of a large number of controllers using pre-established stability margins of a small number of nu-gap-wise adjacent controllers. The generalized stability margin and the nu-gap metric are inherently able to handle MIMO system analysis without the necessity of repeating multiple channel-by-channel SISO analyses. This research consists of three parts: (i) development of a decision support tool for inference of the stability margin, (ii) computational considerations for yielding the maximal stability margin with the minimal nu-gap metric in a less conservative manner, and (iii) experiment design for estimating the generalized stability margin with an assured error bound. A modern problem from aerospace control involves the certification of a large set of potential controllers with either a single plant or a fleet of potential plant systems, with both plants and controllers being MIMO and, for the moment, linear. Experiments on a limited number of controller/plant pairs should establish the stability and a certain level of margin of the complete set. We consider this certification problem for a set of controllers and provide algorithms for selecting an efficient subset for testing. This is done for a finite set of candidate controllers and, at least for SISO plants, for an infinite set. In doing this, the nu-gap metric will be the main tool. We provide a theorem restricting a radius of a ball in the parameter space so that the controller can guarantee a prescribed level of stability and performance if parameters of the controllers are contained in the ball. Computational examples are given, including one of certification of an aircraft engine controller. The overarching aim is to introduce truly MIMO margin calculations and to understand their efficacy in certifying stability over a set of controllers and in replacing legacy single-loop gain and phase margin calculations. We consider methods for the

  18. In silico identification of conserved microRNAs in large number of diverse plant species

    PubMed Central

    Sunkar, Ramanjulu; Jagadeeswaran, Guru

    2008-01-01

    Background MicroRNAs (miRNAs) are recently discovered small non-coding RNAs that play pivotal roles in gene expression, specifically at the post-transcriptional level in plants and animals. Identification of miRNAs in large number of diverse plant species is important to understand the evolution of miRNAs and miRNA-targeted gene regulations. Now-a-days, publicly available databases play a central role in the in-silico biology. Because, at least ~21 miRNA families are conserved in higher plants, a homology based search using these databases can help identify orthologs or paralogs in plants. Results We searched all publicly available nucleotide databases of genome survey sequences (GSS), high-throughput genomics sequences (HTGS), expressed sequenced tags (ESTs) and nonredundant (NR) nucleotides and identified 682 miRNAs in 155 diverse plant species. We found more than 15 conserved miRNA families in 11 plant species, 10 to14 families in 10 plant species and 5 to 9 families in 29 plant species. Nineteen conserved miRNA families were identified in important model legumes such as Medicago, Lotus and soybean. Five miRNA families – miR319, miR156/157, miR169, miR165/166 and miR394 – were found in 51, 45, 41, 40 and 40 diverse plant species, respectively. miR403 homologs were found in 16 dicots, whereas miR437 and miR444 homologs, as well as the miR396d/e variant of the miR396 family, were found only in monocots, thus providing large-scale authenticity for the dicot- and monocot-specific miRNAs. Furthermore, we provide computational and/or experimental evidence for the conservation of 6 newly found Arabidopsis miRNA homologs (miR158, miR391, miR824, miR825, miR827 and miR840) and 2 small RNAs (small-85 and small-87) in Brassica spp. Conclusion Using all publicly available nucleotide databases, 682 miRNAs were identified in 155 diverse plant species. By combining the expression analysis with the computational approach, we found that 6 miRNAs and 2 small RNAs that have

  19. Activities with Whole Numbers, Mathematics (Experimental): 5212.73.

    ERIC Educational Resources Information Center

    Dade County Public Schools, Miami, FL.

    Designed for the student who has acquired basic computational skills with non-negative rational numbers, this guidebook delineates minimum course content to further develop students' computational skills with whole numbers. Place value and estimation are also covered. General goals, performance objectives, a course outline, suggested teaching…

  20. Agricultural Science Lab Activities. Instructor Guide. Volume 27, Number 2.

    ERIC Educational Resources Information Center

    Thompson, Gregory W.; And Others

    This instructor guide contains 20 laboratory activities for grades 9-10 Agricultural Science I-II classes. The activities are cross-referenced to Missouri Core Competencies and Key Skills. The activities are organized into the following areas: introductory (microscope use); animal nutrition (absorption of nutrients, bacteria and disease, enzyme…

  1. Investigating the evolution of Shared Socioeconomic Pathways with a large number of scenarios

    NASA Astrophysics Data System (ADS)

    Schweizer, V. J.; Guivarch, C.; Rozenberg, J.

    2013-12-01

    The new scenario framework for climate change research includes alternative possible trends for socioeconomic development called Shared Socioeconomic Pathways (SSPs). The SSPs bear some similarities to other scenarios used for global change research, but they also have important differences. Like the IPCC Special Report on Emissions Scenarios or the Millennium Ecosystem Assessment, SSPs are defined by a scenario logic consisting of two axes. However, these axes define SSPs with respect to their location in an outcome space for challenges to mitigation and to adaptation rather than by their drivers. Open questions for the SSPs include what their drivers are and how the time dimension could be interpreted with the outcomes space. We present a new analytical approach for addressing both questions by studying large numbers of scenarios produced by an integrated assessment model, IMACLIM-R. We systematically generated 432 scenarios and used the SSP framework to classify them by typology. We then analyzed them dynamically, tracing their evolution through the SSP challenges space at annual time steps over the period 2010-2090. Through this approach, we found that many scenarios do not remain fixed to a particular SSP domain; they drift from one domain to another. In papers describing the framework for new scenarios, SSPs are envisioned as hypothetical (counter-factual) reference scenarios that remain fixed in one domain over some time period of interest. However, we conclude that it may be important to also research scenarios that shift across SSP domains. This is relevant for another open question, which is what scenarios are important to explore given their consequences. Through a data mining technique, we uncovered prominent drivers for scenarios that shift across SSP domains. Scenarios with different challenges for adaptation and mitigation (that is, mitigation and adaptation challenges that are not co-varying) were found to be the least stable, and the following

  2. ACTIVE SOIL DEPRESSURIZATION (ASD) DEMONSTRATION IN A LARGE BUILDING

    EPA Science Inventory

    The report gives results of an evaluation of the feasibility of implementing radon resistant construction techniques -- especially active soil depressurization (ASD) -- in new large buildings in Florida. Indoor radon concentrations and radon entry were monitored in a finished bui...

  3. Noshing on Numbers: Using and Interpreting Data in Activities

    NASA Astrophysics Data System (ADS)

    Shupla, C. B.

    2014-07-01

    Students must learn how to plot and analyze data as a fundamental science and math skill. Data must also be incorporated into activities in meaningful ways that allow students to build understanding of the concepts being shared. In this workshop, attendees participated in three graphing activities, which served as the basis for discussion of these numerical literacy issues in the science classroom.

  4. Number Wonders: 171 Activities to Meet Math Standards & Inspire Students

    ERIC Educational Resources Information Center

    Kuhns, Catherine Jones

    2006-01-01

    In this book, author Catherine Jones Kuhns introduces student- and teacher-friendly math activities designed to get students thinking like mathematicians and loving mathematics, while addressing content standards through grade 2. She also shows how to make math fun for students, get children actively engaged in learning, create a student-centered…

  5. Spatiotemporal dynamics of large-scale brain activity

    NASA Astrophysics Data System (ADS)

    Neuman, Jeremy

    Understanding the dynamics of large-scale brain activity is a tough challenge. One reason for this is the presence of an incredible amount of complexity arising from having roughly 100 billion neurons connected via 100 trillion synapses. Because of the extremely high number of degrees of freedom in the nervous system, the question of how the brain manages to properly function and remain stable, yet also be adaptable, must be posed. Neuroscientists have identified many ways the nervous system makes this possible, of which synaptic plasticity is possibly the most notable one. On the other hand, it is vital to understand how the nervous system also loses stability, resulting in neuropathological diseases such as epilepsy, a disease which affects 1% of the population. In the following work, we seek to answer some of these questions from two different perspectives. The first uses mean-field theory applied to neuronal populations, where the variables of interest are the percentages of active excitatory and inhibitory neurons in a network, to consider how the nervous system responds to external stimuli, self-organizes and generates epileptiform activity. The second method uses statistical field theory, in the framework of single neurons on a lattice, to study the concept of criticality, an idea borrowed from physics which posits that in some regime the brain operates in a collectively stable or marginally stable manner. This will be examined in two different neuronal networks with self-organized criticality serving as the overarching theme for the union of both perspectives. One of the biggest problems in neuroscience is the question of to what extent certain details are significant to the functioning of the brain. These details give rise to various spatiotemporal properties that at the smallest of scales explain the interaction of single neurons and synapses and at the largest of scales describe, for example, behaviors and sensations. In what follows, we will shed some

  6. Development and application of an optogenetic platform for controlling and imaging a large number of individual neurons

    NASA Astrophysics Data System (ADS)

    Mohammed, Ali Ibrahim Ali

    The understanding and treatment of brain disorders as well as the development of intelligent machines is hampered by the lack of knowledge of how the brain fundamentally functions. Over the past century, we have learned much about how individual neurons and neural networks behave, however new tools are critically needed to interrogate how neural networks give rise to complex brain processes and disease conditions. Recent innovations in molecular techniques, such as optogenetics, have enabled neuroscientists unprecedented precision to excite, inhibit and record defined neurons. The impressive sensitivity of currently available optogenetic sensors and actuators has now enabled the possibility of analyzing a large number of individual neurons in the brains of behaving animals. To promote the use of these optogenetic tools, this thesis integrates cutting edge optogenetic molecular sensors which is ultrasensitive for imaging neuronal activity with custom wide field optical microscope to analyze a large number of individual neurons in living brains. Wide-field microscopy provides a large field of view and better spatial resolution approaching the Abbe diffraction limit of fluorescent microscope. To demonstrate the advantages of this optical platform, we imaged a deep brain structure, the Hippocampus, and tracked hundreds of neurons over time while mouse was performing a memory task to investigate how those individual neurons related to behavior. In addition, we tested our optical platform in investigating transient neural network changes upon mechanical perturbation related to blast injuries. In this experiment, all blasted mice show a consistent change in neural network. A small portion of neurons showed a sustained calcium increase for an extended period of time, whereas the majority lost their activities. Finally, using optogenetic silencer to control selective motor cortex neurons, we examined their contributions to the network pathology of basal ganglia related to

  7. Reliability issues in active control of large flexible space structures

    NASA Technical Reports Server (NTRS)

    Vandervelde, W. E.

    1983-01-01

    The unreliability of control system components was investigated in our attempt to deal with that problem. This matter is of concern in large space structure control because of the large number of components required to achieve specified performance in some situations, and the long operating period required between maintenance visits. The detection and isolation of component failures during system operation, and algorithms for reconfiguring control systems following detection and isolation of a failure were emphasized.

  8. 105-DR Large Sodium Fire Facility closure activities evaluation report

    SciTech Connect

    Adler, J.G.

    1996-04-11

    This report evaluates the closure activities at the 105-DR Large Sodium Fire Facility. The evaluation compares these activities to the regulatory requirements and closure plan requirements. The report concludes that the areas identified in the closure plan can be clean closed. This report summarizes and evaluates the closure activities performed in support of partial closure of the 105-DR Large Sodium Fire Facility (LSFF). This evaluation will be used in assessing the condition of the 105-DR LSFF for the purpose of meeting the partial clean closure conditions described in the 105-DR Large Sodium Fire Facility Closure Plan (DOE-RL 1995). Based on the evaluation of the decontamination activities, sampling activities, and sample data, it is has been determined that the partial clean closure conditions for the 105-DR LSFF have been met.

  9. Modeling users' activity on Twitter networks: validation of Dunbar's number

    NASA Astrophysics Data System (ADS)

    Goncalves, Bruno; Perra, Nicola; Vespignani, Alessandro

    2012-02-01

    Microblogging and mobile devices appear to augment human social capabilities, which raises the question whether they remove cognitive or biological constraints on human communication. In this paper we analyze a dataset of Twitter conversations collected across six months involving 1.7 million individuals and test the theoretical cognitive limit on the number of stable social relationships known as Dunbar's number. We find that the data are in agreement with Dunbar's result; users can entertain a maximum of 100-200 stable relationships. Thus, the ``economy of attention'' is limited in the online world by cognitive and biological constraints as predicted by Dunbar's theory. We propose a simple model for users' behavior that includes finite priority queuing and time resources that reproduces the observed social behavior.

  10. Modeling users' activity on twitter networks: validation of Dunbar's number.

    PubMed

    Gonçalves, Bruno; Perra, Nicola; Vespignani, Alessandro

    2011-01-01

    Microblogging and mobile devices appear to augment human social capabilities, which raises the question whether they remove cognitive or biological constraints on human communication. In this paper we analyze a dataset of Twitter conversations collected across six months involving 1.7 million individuals and test the theoretical cognitive limit on the number of stable social relationships known as Dunbar's number. We find that the data are in agreement with Dunbar's result; users can entertain a maximum of 100-200 stable relationships. Thus, the 'economy of attention' is limited in the online world by cognitive and biological constraints as predicted by Dunbar's theory. We propose a simple model for users' behavior that includes finite priority queuing and time resources that reproduces the observed social behavior.

  11. Modelling large scale human activity in San Francisco

    NASA Astrophysics Data System (ADS)

    Gonzalez, Marta

    2010-03-01

    Diverse group of people with a wide variety of schedules, activities and travel needs compose our cities nowadays. This represents a big challenge for modeling travel behaviors in urban environments; those models are of crucial interest for a wide variety of applications such as traffic forecasting, spreading of viruses, or measuring human exposure to air pollutants. The traditional means to obtain knowledge about travel behavior is limited to surveys on travel journeys. The obtained information is based in questionnaires that are usually costly to implement and with intrinsic limitations to cover large number of individuals and some problems of reliability. Using mobile phone data, we explore the basic characteristics of a model of human travel: The distribution of agents is proportional to the population density of a given region, and each agent has a characteristic trajectory size contain information on frequency of visits to different locations. Additionally we use a complementary data set given by smart subway fare cards offering us information about the exact time of each passenger getting in or getting out of the subway station and the coordinates of it. This allows us to uncover the temporal aspects of the mobility. Since we have the actual time and place of individual's origin and destination we can understand the temporal patterns in each visited location with further details. Integrating two described data set we provide a dynamical model of human travels that incorporates different aspects observed empirically.

  12. Comparison of jet Mach number decay data with a correlation and jet spreading contours for a large variety of nozzles

    NASA Technical Reports Server (NTRS)

    Groesbeck, D. E.; Huff, R. G.; Vonglahn, U. H.

    1977-01-01

    Small-scale circular, noncircular, single- and multi-element nozzles with flow areas as large as 122 sq cm were tested with cold airflow at exit Mach numbers from 0.28 to 1.15. The effects of multi-element nozzle shape and element spacing on jet Mach number decay were studied in an effort to reduce the noise caused by jet impingement on externally blown flap (EBF) STOL aircraft. The jet Mach number decay data are well represented by empirical relations. Jet spreading and Mach number decay contours are presented for all configurations tested.

  13. Two Learning Activities for a Large Introductory Statistics Class

    ERIC Educational Resources Information Center

    Zacharopoulou, Hrissoula

    2006-01-01

    In a very large Introductory Statistics class, i.e. in a class of more than 300 students, instructors may hesitate to apply active learning techniques, discouraged by the volume of extra work. In this paper two such activities are presented that evoke student involvement in the learning process. The first is group peer teaching and the second is…

  14. Practical quantum metrology with large precision gains in the low-photon-number regime

    NASA Astrophysics Data System (ADS)

    Knott, P. A.; Proctor, T. J.; Hayes, A. J.; Cooling, J. P.; Dunningham, J. A.

    2016-03-01

    Quantum metrology exploits quantum correlations to make precise measurements with limited particle numbers. By utilizing inter- and intramode correlations in an optical interferometer, we find a state that combines entanglement and squeezing to give a sevenfold enhancement in the quantum Fisher information (QFI)—a metric related to the precision—over the shot-noise limit, for low photon numbers. Motivated by practicality we then look at the squeezed cat state, which has recently been made experimentally, and shows further precision gains over the shot-noise limit and a threefold improvement in the QFI over the optimal Gaussian state. We present a conceptually simple measurement scheme that saturates the QFI, and we demonstrate a robustness to loss for small photon numbers. The squeezed cat state can therefore give a significant precision enhancement in optical quantum metrology in practical and realistic conditions.

  15. Accelerated Modular Multiplication Algorithm of Large Word Length Numbers with a Fixed Module

    NASA Astrophysics Data System (ADS)

    Bardis, Nikolaos; Drigas, Athanasios; Markovskyy, Alexander; Vrettaros, John

    A new algorithm is proposed for the software implementation of modular multiplication, which uses pre-computations with a constant module. The developed modular multiplication algorithm provides high performance in comparison with the already known algorithms, and is oriented at the variable value of the module, especially with the software implementation on micro controllers and smart cards with a small number of bits.

  16. Distance graphs having large chromatic numbers and containing no cliques or cycles of a given size

    SciTech Connect

    Demekhin, Evgenii E; Raigorodskii, Andrei M; Rubanov, Oleg I

    2013-04-30

    It is established that there exist sequences of distance graphs G{sub n} subset of R{sup n}, with chromatic numbers which grow exponentially, but, at the same time, without cliques or cycles of a given size. Bibliography: 42 titles.

  17. A Treatment of Computational Precision, Number Representation, and Large Integers in an Introductory Fortran Course

    ERIC Educational Resources Information Center

    Richardson, William H., Jr.

    2006-01-01

    Computational precision is sometimes given short shrift in a first programming course. Treating this topic requires discussing integer and floating-point number representations and inaccuracies that may result from their use. An example of a moderately simple programming problem from elementary statistics was examined. It forced students to…

  18. Physician resource databank: numbers, distribution and activities of Canada's physicians

    PubMed Central

    Woodward, Christel; Adams, Orvill

    1985-01-01

    The physician resource databank, compiled and maintained by the Canadian Medical Association (CMA), contains functional information from 41 599 of Canada's licensed physicians. The information was gathered from a 20-item questionnaire sent to 47 162 physicians. Of the total, 38 653 responses came from physicians who had completed their training and these were included in the analysis to produce a profile of the supply of physicians in Canada. The data from physicians younger than 35 years indicate some changes in the structure of the supply: 27% are women (compared with only about 9% of physicians older than 45 years). The implications of these statistics are not yet clear, but within the next decade the numbers in some specialties—surgery, anesthesia, obstetrics and gynecology, and radiology—may be too few to meet the demand as more than 20% of the current practitioners reach retirement age. Other findings are that [List: see text] PMID:3995440

  19. Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats.

    PubMed

    Platt, Roy N; Vandewege, Michael W; Kern, Colin; Schmidt, Carl J; Hoffmann, Federico G; Ray, David A

    2014-06-01

    Vesper bats (family Vespertilionidae) experienced a rapid adaptive radiation beginning around 36 Ma that resulted in the second most species-rich mammalian family (>400 species). Coincident with that radiation was an initial burst of DNA transposon activity that has continued into the present in some species. Such extensive and recent DNA transposon activity has not been seen in any other extant mammal. Indeed, retrotransposon activity is much more common in all other sequenced mammal genomes. Deep sequencing of the small RNA fraction from a vespertilionid bat, Eptesicus fuscus, as well as a dog and horse revealed large numbers of 17-24 bp putative miRNAs (p/miRNAs). Although the origination rate of p/miRNAs is similar in all three taxa, 61.1% of postdivergence p/miRNAs in Eptesicus are derived from transposable elements (TEs) compared with only 23.9% and 16.5% in the dog and horse, respectively. Not surprisingly, given the retrotransposon bias of dog and horse, the majority of TE-derived p/miRNAs are associated with retrotransposons. In Eptesicus, however, 58.7% of the TE-derived and 35.9% of the total p/miRNAs arose not from retrotransposons but from bat-specific DNA transposons. Notably, we observe that the timing of the DNA transposon expansion and the resulting introduction of novel p/miRNAs coincide with the rapid diversification of the family Vespertilionidae. Furthermore, potential targets of the DNA transposon-derived p/miRNAs are identifiable and enriched for genes that are important for regulation of transcription. We propose that lineage-specific DNA transposon activity lead to the rapid and repeated introduction of novel p/miRNAs. Some of these p/miRNAs are likely functional miRNAs and potentially influenced the diversification of Vespertilionidae. Our observations suggest a mechanism for introducing functional genomic variation rapidly through the expansion of DNA transposons that fits within the TE-thrust hypothesis.

  20. A comment on "bats killed in large numbers at United States wind energy facilities"

    USGS Publications Warehouse

    Huso, Manuela M.P.; Dalthorp, Dan

    2014-01-01

    Widespread reports of bat fatalities caused by wind turbines have raised concerns about the impacts of wind power development. Reliable estimates of the total number killed and the potential effects on populations are needed, but it is crucial that they be based on sound data. In a recent BioScience article, Hayes (2013) estimated that over 600,000 bats were killed at wind turbines in the United States in 2012. The scientific errors in the analysis are numerous, with the two most serious being that the included sites constituted a convenience sample, not a representative sample, and that the individual site estimates are derived from such different methodologies that they are inherently not comparable. This estimate is almost certainly inaccurate, but whether the actual number is much smaller, much larger, or about the same is uncertain. An accurate estimate of total bat fatality is not currently possible, given the shortcomings of the available data.

  1. Analogue algorithm for parallel factorization of an exponential number of large integers: II—optical implementation

    NASA Astrophysics Data System (ADS)

    Tamma, Vincenzo

    2016-12-01

    We report a detailed analysis of the optical realization of the analogue algorithm described in the first paper of this series (Tamma in Quantum Inf Process 11128:1190, 2015) for the simultaneous factorization of an exponential number of integers. Such an analogue procedure, which scales exponentially in the context of first-order interference, opens up the horizon to polynomial scaling by exploiting multi-particle quantum interference.

  2. Large scale Direct Numerical Simulation of premixed turbulent jet flames at high Reynolds number

    NASA Astrophysics Data System (ADS)

    Attili, Antonio; Luca, Stefano; Lo Schiavo, Ermanno; Bisetti, Fabrizio; Creta, Francesco

    2016-11-01

    A set of direct numerical simulations of turbulent premixed jet flames at different Reynolds and Karlovitz numbers is presented. The simulations feature finite rate chemistry with 16 species and 73 reactions and up to 22 Billion grid points. The jet consists of a methane/air mixture with equivalence ratio ϕ = 0 . 7 and temperature varying between 500 and 800 K. The temperature and species concentrations in the coflow correspond to the equilibrium state of the burnt mixture. All the simulations are performed at 4 atm. The flame length, normalized by the jet width, decreases significantly as the Reynolds number increases. This is consistent with an increase of the turbulent flame speed due to the increased integral scale of turbulence. This behavior is typical of flames in the thin-reaction zone regime, which are affected by turbulent transport in the preheat layer. Fractal dimension and topology of the flame surface, statistics of temperature gradients, and flame structure are investigated and the dependence of these quantities on the Reynolds number is assessed.

  3. Distributed calculation method for large-pixel-number holograms by decomposition of object and hologram planes.

    PubMed

    Jackin, Boaz Jessie; Miyata, Hiroaki; Ohkawa, Takeshi; Ootsu, Kanemitsu; Yokota, Takashi; Hayasaki, Yoshio; Yatagai, Toyohiko; Baba, Takanobu

    2014-12-15

    A method has been proposed to reduce the communication overhead in computer-generated hologram (CGH) calculations on parallel and distributed computing devices. The method uses the shifting property of Fourier transform to decompose calculations, thereby avoiding data dependency and communication. This enables the full potential of parallel and distributed computing devices. The proposed method is verified by simulation and optical experiments and can achieve a 20 times speed improvement compared to conventional methods, while using large data sizes.

  4. Detailed Measurements of Turbulent Rayleigh-Taylor Mixing at Large and Small Atwood Numbers

    SciTech Connect

    Malcolm J. Andrews, Ph.D.

    2004-12-14

    This project has two major tasks: Task 1. The construction of a new air/helium facility to collect detailed measurements of Rayleigh-Taylor (RT) mixing at high Atwood number, and the distribution of these data to LLNL, LANL, and Alliance members for code validation and design purposes. Task 2. The collection of initial condition data from the new Air/Helium facility, for use with validation of RT simulation codes at LLNL and LANL. Also, studies of multi-layer mixing with the existing water channel facility. Over the last twelve (12) months there has been excellent progress, detailed in this report, with both tasks. As of December 10, 2004, the air/helium facility is now complete and extensive testing and validation of diagnostics has been performed. Currently experiments with air/helium up to Atwood numbers of 0.25 (the maximum is 0.75, but the highest Reynolds numbers are at 0.25) are being performed. The progress matches the project plan, as does the budget, and we expect this to continue for 2005. With interest expressed from LLNL we have continued with initial condition studies using the water channel. This work has also progressed well, with one of the graduate Research Assistants (Mr. Nick Mueschke) visiting LLNL the past two summers to work with Dr. O. Schilling. Several journal papers are in preparation that describe the work. Two MSc.'s have been completed (Mr. Nick Mueschke, and Mr. Wayne Kraft, 12/1/03). Nick and Wayne are both pursuing Ph.D.s' funded by this DOE Alliances project. Presently three (3) Ph.D. graduate Research Assistants are supported on the project, and two (2) undergraduate Research Assistants. During the year two (2) journal papers and two (2) conference papers have been published, ten (10) presentations made at conferences, and three (3) invited presentations.

  5. Large-Eddy Simulation of Conductive Flows at Low Magnetic Reynolds Number

    NASA Technical Reports Server (NTRS)

    Knaepen, B.; Moin, P.

    2003-01-01

    In this paper we study the LES method with dynamic procedure in the context of conductive flows subject to an applied external magnetic field at low magnetic Reynolds number R(sub m). These kind of flows are encountered in many industrial applications. For example, in the steel industry, applied magnetic fields can be used to damp turbulence in the casting process. In nuclear fusion devices (Tokamaks), liquid-lithium flows are used as coolant blankets and interact with the surrounding magnetic field that drives and confines the fusion plasma. Also, in experimental facilities investigating the dynamo effect, the flow consists of liquid-sodium for which the Prandtl number and, as a consequence, the magnetic Reynolds number is low. Our attention is focused here on the case of homogeneous (initially isotropic) decaying turbulence. The numerical simulations performed mimic the thought experiment described in Moffatt in which an initially homogeneous isotropic conductive flow is suddenly subjected to an applied magnetic field and freely decays without any forcing. Note that this flow was first studied numerically by Schumann. It is well known that in that case, extra damping of turbulence occurs due to the Joule effect and that the flow tends to become progressively independent of the coordinate along the direction of the magnetic field. Our comparison of filtered direct numerical simulation (DNS) predictions and LES predictions show that the dynamic Smagorinsky model enables one to capture successfully the flow with LES, and that it automatically incorporates the effect of the magnetic field on the turbulence. Our paper is organized as follows. In the next section we summarize the LES approach in the case of MHD turbulence at low R(sub m) and recall the definition of the dynamic Smagorinsky model. In Sec. 3 we describe the parameters of the numerical experiments performed and the code used. Section 4 is devoted to the comparison of filtered DNS results and LES results

  6. A comparison of three approaches to compute the effective Reynolds number of the implicit large-eddy simulations

    SciTech Connect

    Zhou, Ye; Thornber, Ben

    2016-04-12

    Here, the implicit large-eddy simulation (ILES) has been utilized as an effective approach for calculating many complex flows at high Reynolds number flows. Richtmyer–Meshkov instability (RMI) induced flow can be viewed as a homogeneous decaying turbulence (HDT) after the passage of the shock. In this article, a critical evaluation of three methods for estimating the effective Reynolds number and the effective kinematic viscosity is undertaken utilizing high-resolution ILES data. Effective Reynolds numbers based on the vorticity and dissipation rate, or the integral and inner-viscous length scales, are found to be the most self-consistent when compared to the expected phenomenology and wind tunnel experiments.

  7. Laboratory Study of Magnetorotational Instability and Hydrodynamic Stability at Large Reynolds Numbers

    NASA Technical Reports Server (NTRS)

    Ji, H.; Burin, M.; Schartman, E.; Goodman, J.; Liu, W.

    2006-01-01

    Two plausible mechanisms have been proposed to explain rapid angular momentum transport during accretion processes in astrophysical disks: nonlinear hydrodynamic instabilities and magnetorotational instability (MRI). A laboratory experiment in a short Taylor-Couette flow geometry has been constructed in Princeton to study both mechanisms, with novel features for better controls of the boundary-driven secondary flows (Ekman circulation). Initial results on hydrodynamic stability have shown negligible angular momentum transport in Keplerian-like flows with Reynolds numbers approaching one million, casting strong doubt on the viability of nonlinear hydrodynamic instability as a source for accretion disk turbulence.

  8. Experimental Investigation of Free-Convection Heat Transfer in Vertical Tube at Large Grashof Numbers

    NASA Technical Reports Server (NTRS)

    Eckert, E R G; Diaguila, A J

    1955-01-01

    Report presents the results of an investigation conducted to study free-convection heat transfer in a stationary vertical tube closed at the bottom. The walls of the tube were heated, and heated air in the tube was continuously replaced by fresh cool air at the top. The tube was designed to provide a gravitational field with Grashof numbers of a magnitude comparable with those generated by the centrifugal field in rotating-blade coolant passages (10(8) to 10(13)). Local heat-transfer coefficients in the turbulent-flow range and the temperature field within the fluid were obtained.

  9. ActiveSeismoPick3D - automatic first arrival determination for large active seismic arrays

    NASA Astrophysics Data System (ADS)

    Paffrath, Marcel; Küperkoch, Ludger; Wehling-Benatelli, Sebastian; Friederich, Wolfgang

    2016-04-01

    We developed a tool for automatic determination of first arrivals in active seismic data based on an approach, that utilises higher order statistics (HOS) and the Akaike information criterion (AIC), commonly used in seismology, but not in active seismics. Automatic picking is highly desirable in active seismics as the number of data provided by large seismic arrays rapidly exceeds of what an analyst can evaluate in a reasonable amount of time. To bring the functionality of automatic phase picking into the context of active data, the software package ActiveSeismoPick3D was developed in Python. It uses a modified algorithm for the determination of first arrivals which searches for the HOS maximum in unfiltered data. Additionally, it offers tools for manual quality control and postprocessing, e.g. various visualisation and repicking functionalities. For flexibility, the tool also includes methods for the preparation of geometry information of large seismic arrays and improved interfaces to the Fast Marching Tomography Package (FMTOMO), which can be used for the prediction of travel times and inversion for subsurface properties. Output files are generated in the VTK format, allowing the 3D visualization of e.g. the inversion results. As a test case, a data set consisting of 9216 traces from 64 shots was gathered, recorded at 144 receivers deployed in a regular 2D array of a size of 100 x 100 m. ActiveSeismoPick3D automatically checks the determined first arrivals by a dynamic signal to noise ratio threshold. From the data a 3D model of the subsurface was generated using the export functionality of the package and FMTOMO.

  10. Location, number and morphology of parathyroid glands: results from a large anatomical series.

    PubMed

    Lappas, Dimitrios; Noussios, George; Anagnostis, Panagiotis; Adamidou, Fotini; Chatzigeorgiou, Antonios; Skandalakis, Panagiotis

    2012-09-01

    Surgical management of parathyroid gland disease may sometimes be difficult, due mainly to the surgeon's failure to successfully detect parathyroids in unusual locations. The records of 942 cadavers (574 men and 368 women) who underwent autopsy in the Department of Forensic Medicine in Athens during the period 1988-2009 were reviewed. In total, 3,796 parathyroid glands were resected and histologically verified. Parathyroid glands varied in number. In 47 cases (5 %), one supernumerary (fifth) parathyroid was found, while in 19 cases (2 %) three parathyroid glands found. Superior glands were larger than inferior ones. However, there was no significant difference between the genders with respect to gland size. In 324 (8.5 %) out of 3,796, the glands were detected in an ectopic location: 7 (0.2 %) in the thyroid parenchyma, 79 (2 %) in different sites in the neck and 238 (6.3 %) in the mediastinum, 152 (4.1 %) of which were found in the upper and 86 (2.2 %) in the lower mediastinum. Significant anatomical variations of normal parathyroid glands may exist regarding number and location-knowledge that is essential for their successful identification and surgical management.

  11. Itinerary profiling to analyze a large number of protein-folding trajectories

    PubMed Central

    Ota, Motonori; Ikeguchi, Mitsunori; Kidera, Akinori

    2016-01-01

    Understanding how proteins fold through a vast number of unfolded states is a major subject in the study of protein folding. Herein, we present itinerary profiling as a simple method to analyze molecular dynamics trajectories, and apply this method to Trp-cage. In itinerary profiling, structural clusters included in a trajectory are represented by a bit sequence, and a number of trajectories, as well as the structural clusters, can be compared and classified. As a consequence, the structural clusters that characterize the foldability of trajectories were able to be identified. The connections between the clusters were then illustrated as a network and the structural features of the clusters were examined. We found that in the true folding funnel, Trp-cage formed a left-handed main-chain topology and the Trp6 side-chain was located at the front of the main-chain ring, even in the initial unfolded states. In contrast, in the false folding funnel of the pseudo-native states, in which the Trp6 side-chain is upside down in the protein core, Trp-cage had a right-handed main-chain topology and the Trp side-chain was at the back. The initial topological partition, as determined by the main-chain handedness and the location of the Trp residue, predetermines Trp-cage foldability and the destination of the trajectory to the native state or the pseudo-native states.

  12. The Empirical Distribution of a Large Number of Correlated Normal Variables

    PubMed Central

    Azriel, David; Schwartzman, Armin

    2015-01-01

    Motivated by the advent of high dimensional highly correlated data, this work studies the limit behavior of the empirical cumulative distribution function (ecdf) of standard normal random variables under arbitrary correlation. First, we provide a necessary and sufficient condition for convergence of the ecdf to the standard normal distribution. Next, under general correlation, we show that the ecdf limit is a random, possible infinite, mixture of normal distribution functions that depends on a number of latent variables and can serve as an asymptotic approximation to the ecdf in high dimensions. We provide conditions under which the dimension of the ecdf limit, defined as the smallest number of effective latent variables, is finite. Estimates of the latent variables are provided and their consistency proved. We demonstrate these methods in a real high-dimensional data example from brain imaging where it is shown that, while the study exhibits apparently strongly significant results, they can be entirely explained by correlation, as captured by the asymptotic approximation developed here. PMID:26858467

  13. Large Eddy Simulation of Airfoil Self-Noise at High Reynolds Number

    NASA Astrophysics Data System (ADS)

    Kocheemoolayil, Joseph; Lele, Sanjiva

    2015-11-01

    The trailing edge noise section (Category 1) of the Benchmark Problems for Airframe Noise Computations (BANC) workshop features five canonical problems. No first-principles based approach free of empiricism and tunable coefficients has successfully predicted trailing edge noise for the five configurations to date. Our simulations predict trailing edge noise accurately for all five configurations. The simulation database is described in detail, highlighting efforts undertaken to validate the results through systematic comparison with dedicated experiments and establish insensitivity to grid resolution, domain size, alleatory uncertainties such as the tripping mechanism used to force transition to turbulence and epistemic uncertainties such as models for unresolved near-wall turbulence. Ongoing efforts to extend the predictive capability to non-canonical configurations featuring flow separation are summarized. A novel, large-span calculation that predicts the flow past a wind turbine airfoil in deep stall with unprecedented accuracy is presented. The simulations predict airfoil noise in the near-stall regime accurately. While the post-stall noise predictions leave room for improvement, significant uncertainties in the experiment might preclude a fair comparison in this regime. We thank Cascade Technologies Inc. for providing access to the CharLES toolkit - a massively-parallel, unstructured large eddy simulation framework.

  14. Number of deaths due to lung diseases: How large is the problem

    SciTech Connect

    Wagener, D.K. )

    1990-06-01

    The importance of lung disease as an indicator of environmentally induced adverse health effects has been recognized by inclusion among the Health Objectives for the Nation. The 1990 Health Objectives for the Nation (US Department of Health and Human Services, 1986) includes an objective that there should be virtually no new cases among newly exposed workers for four preventable occupational lung diseases-asbestosis, byssinosis, silicosis, and coal workers' pneumoconiosis. This brief communication describes two types of cause-of-death statistics- underlying and multiple cause-and demonstrates the differences between the two statistics using lung disease deaths among adult men. The choice of statistic has a large impact on estimated lung disease mortality rates. The choice of statistics also may have large effect on the estimated mortality rates due to other chromic diseases thought to be environmentally mediated. Issues of comorbidity and the way causes of death are reported become important in the interpretation of these statistics. The choice of which statistic to use when comparing data from a study population with national statistics may greatly affect the interpretations of the study findings.

  15. How number line estimation skills relate to neural activations in single digit subtraction problems.

    PubMed

    Berteletti, I; Man, G; Booth, J R

    2015-02-15

    The Number Line (NL) task requires judging the relative numerical magnitude of a number and estimating its value spatially on a continuous line. Children's skill on this task has been shown to correlate with and predict future mathematical competence. Neurofunctionally, this task has been shown to rely on brain regions involved in numerical processing. However, there is no direct evidence that performance on the NL task is related to brain areas recruited during arithmetical processing and that these areas are domain-specific to numerical processing. In this study, we test whether 8- to 14-year-old's behavioral performance on the NL task is related to fMRI activation during small and large single-digit subtraction problems. Domain-specific areas for numerical processing were independently localized through a numerosity judgment task. Results show a direct relation between NL estimation performance and the amount of the activation in key areas for arithmetical processing. Better NL estimators showed a larger problem size effect than poorer NL estimators in numerical magnitude (i.e., intraparietal sulcus) and visuospatial areas (i.e., posterior superior parietal lobules), marked by less activation for small problems. In addition, the direction of the activation with problem size within the IPS was associated with differences in accuracies for small subtraction problems. This study is the first to show that performance in the NL task, i.e. estimating the spatial position of a number on an interval, correlates with brain activity observed during single-digit subtraction problem in regions thought to be involved in numerical magnitude and spatial processes.

  16. Multistability in Large Scale Models of Brain Activity

    PubMed Central

    Golos, Mathieu; Jirsa, Viktor; Daucé, Emmanuel

    2015-01-01

    Noise driven exploration of a brain network’s dynamic repertoire has been hypothesized to be causally involved in cognitive function, aging and neurodegeneration. The dynamic repertoire crucially depends on the network’s capacity to store patterns, as well as their stability. Here we systematically explore the capacity of networks derived from human connectomes to store attractor states, as well as various network mechanisms to control the brain’s dynamic repertoire. Using a deterministic graded response Hopfield model with connectome-based interactions, we reconstruct the system’s attractor space through a uniform sampling of the initial conditions. Large fixed-point attractor sets are obtained in the low temperature condition, with a bigger number of attractors than ever reported so far. Different variants of the initial model, including (i) a uniform activation threshold or (ii) a global negative feedback, produce a similarly robust multistability in a limited parameter range. A numerical analysis of the distribution of the attractors identifies spatially-segregated components, with a centro-medial core and several well-delineated regional patches. Those different modes share similarity with the fMRI independent components observed in the “resting state” condition. We demonstrate non-stationary behavior in noise-driven generalizations of the models, with different meta-stable attractors visited along the same time course. Only the model with a global dynamic density control is found to display robust and long-lasting non-stationarity with no tendency toward either overactivity or extinction. The best fit with empirical signals is observed at the edge of multistability, a parameter region that also corresponds to the highest entropy of the attractors. PMID:26709852

  17. Space Situational Awareness of Large Numbers of Payloads from a Single Deployment

    DTIC Science & Technology

    2014-09-01

    solar cells .) The cubesat orbit parameters were derived from the actual Kicksat orbit and are given in Table 1. Table 1. Simulated Kicksat Orbit...inevitably occur at higher altitudes, with a longer term threat of collision with active spacecraft . With such deployments, individual scientific payload...transponder on each spacecraft . Directional transponder transmission detections could be used as angle observations for orbit cataloging. Of course, such an

  18. Exploring the feasibility of using copy number variants as genetic markers through large-scale whole genome sequencing experiments

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Copy number variants (CNV) are large scale duplications or deletions of genomic sequence that are caused by a diverse set of molecular phenomena that are distinct from single nucleotide polymorphism (SNP) formation. Due to their different mechanisms of formation, CNVs are often difficult to track us...

  19. Double large field stereoscopic PIV in a high Reynolds number turbulent boundary layer

    NASA Astrophysics Data System (ADS)

    Coudert, S.; Foucaut, J. M.; Kostas, J.; Stanislas, M.; Braud, P.; Fourment, C.; Delville, J.; Tutkun, M.; Mehdi, F.; Johansson, P.; George, W. K.

    2011-01-01

    An experiment on a flat plate turbulent boundary layer at high Reynolds number has been carried out in the Laboratoire de Mecanique de Lille (LML, UMR CNRS 8107) wind tunnel. This experiment was performed jointly with LEA (UMR CNRS 6609) in Poitiers (France) and Chalmers University of Technology (Sweden), in the frame of the WALLTURB European project. The simultaneous recording of 143 hot wires in one transverse plane and of two perpendicular stereoscopic PIV fields was performed successfully. The first SPIV plane is 1 cm upstream of the hot wire rake and the second is both orthogonal to the first one and to the wall. The first PIV results show a blockage effect which based on both statistical results (i.e. mean, RMS and spatial correlation) and a potential model does not seem to affect the turbulence organization.

  20. Delayed entanglement echo for individual control of a large number of nuclear spins.

    PubMed

    Wang, Zhen-Yu; Casanova, Jorge; Plenio, Martin B

    2017-03-03

    Methods to selectively detect and manipulate nuclear spins by single electrons of solid-state defects play a central role for quantum information processing and nanoscale nuclear magnetic resonance (NMR). However, with standard techniques, no more than eight nuclear spins have been resolved by a single defect centre. Here we develop a method that improves significantly the ability to detect, address and manipulate nuclear spins unambiguously and individually in a broad frequency band by using a nitrogen-vacancy (NV) centre as model system. On the basis of delayed entanglement control, a technique combining microwave and radio frequency fields, our method allows to selectively perform robust high-fidelity entangling gates between hardly resolved nuclear spins and the NV electron. Long-lived qubit memories can be naturally incorporated to our method for improved performance. The application of our ideas will increase the number of useful register qubits accessible to a defect centre and improve the signal of nanoscale NMR.

  1. Delayed entanglement echo for individual control of a large number of nuclear spins

    NASA Astrophysics Data System (ADS)

    Wang, Zhen-Yu; Casanova, Jorge; Plenio, Martin B.

    2017-03-01

    Methods to selectively detect and manipulate nuclear spins by single electrons of solid-state defects play a central role for quantum information processing and nanoscale nuclear magnetic resonance (NMR). However, with standard techniques, no more than eight nuclear spins have been resolved by a single defect centre. Here we develop a method that improves significantly the ability to detect, address and manipulate nuclear spins unambiguously and individually in a broad frequency band by using a nitrogen-vacancy (NV) centre as model system. On the basis of delayed entanglement control, a technique combining microwave and radio frequency fields, our method allows to selectively perform robust high-fidelity entangling gates between hardly resolved nuclear spins and the NV electron. Long-lived qubit memories can be naturally incorporated to our method for improved performance. The application of our ideas will increase the number of useful register qubits accessible to a defect centre and improve the signal of nanoscale NMR.

  2. Large boson number IBM calculations and their relationship to the Bohr model

    NASA Astrophysics Data System (ADS)

    Thiamova, G.; Rowe, D. J.

    2009-08-01

    Recently, the SO(5) Clebsch-Gordan (CG) coefficients up to the seniority v max = 40 were computed in floating point arithmetic (T.A. Welsh, unpublished (2008)); and, in exact arithmetic, as square roots of rational numbers (M.A. Caprio et al., to be published in Comput. Phys. Commun.). It is shown in this paper that extending the QQQ model calculations set up in the work by D.J. Rowe and G. Thiamova (Nucl. Phys. A 760, 59 (2005)) to N = v max = 40 is sufficient to obtain the IBM results converged to its Bohr contraction limit. This will be done by comparing some important matrix elements in both models, by looking at the seniority decomposition of low-lying states and at the behavior of the energy and B( E2) transition strengths ratios with increasing seniority.

  3. Delayed entanglement echo for individual control of a large number of nuclear spins

    PubMed Central

    Wang, Zhen-Yu; Casanova, Jorge; Plenio, Martin B.

    2017-01-01

    Methods to selectively detect and manipulate nuclear spins by single electrons of solid-state defects play a central role for quantum information processing and nanoscale nuclear magnetic resonance (NMR). However, with standard techniques, no more than eight nuclear spins have been resolved by a single defect centre. Here we develop a method that improves significantly the ability to detect, address and manipulate nuclear spins unambiguously and individually in a broad frequency band by using a nitrogen-vacancy (NV) centre as model system. On the basis of delayed entanglement control, a technique combining microwave and radio frequency fields, our method allows to selectively perform robust high-fidelity entangling gates between hardly resolved nuclear spins and the NV electron. Long-lived qubit memories can be naturally incorporated to our method for improved performance. The application of our ideas will increase the number of useful register qubits accessible to a defect centre and improve the signal of nanoscale NMR. PMID:28256508

  4. Large-Scale Numerical Simulation of Fluid Structure Interactions in Low Reynolds Number Flows

    NASA Astrophysics Data System (ADS)

    Eken, Ali; Sahin, Mehmet

    2011-11-01

    A fully coupled numerical algorithm has been developed for the numerical simulation of large-scale fluid structure interaction problems. The incompressible Navier-Stokes equations are discretized using an Arbitrary Lagrangian-Eulerian (ALE) formulation based on the side-centered unstructured finite volume method. A special attention is given to satisfy the discrete continuity equation within each element at discrete level as well as the Geometric Conservation Law (GCL). The linear elasticity equations are discretized within the structure domain using the Galerkin finite element method. The resulting algebraic linear equations are solved in a fully coupled form using a monolitic multigrid method. The implementation of the fully coupled iterative solvers is based on the PETSc library for improving the efficiency of the parallel code. The present numerical algorithm is initially validated for a beam in cross flow and then it is used to simulate the fluid structure interaction of a membrane-wing micro aerial vehicle (MAV).

  5. Circulating megakaryocytes: delivery of large numbers of intact, mature megakaryocytes to the lungs.

    PubMed

    Levine, R F; Eldor, A; Shoff, P K; Kirwin, S; Tenza, D; Cramer, E M

    1993-10-01

    To determine the locus of platelet production, we sought to determine if sufficient megakaryocytes reach the lungs in a state that could produce platelets. Elutriation was used to isolate megakaryocytes from blood reaching and leaving the lungs of 20 patients undergoing routine cardiac catheterizations. A mean of 5.0 intact megakaryocytes/ml were found in pulmonary artery blood, compared to only 0.5 megakaryocytes/ml, with partial cytoplasmic content, in aortic samples. The megakaryocytes in central venous and aortic samples were all mature. The identity of these cells as megakaryocytes, their maturity and normal morphology were confirmed by standard and immunoelectron microscopy. Cardiac outputs were obtained for each patient at the time of blood sampling, allowing an extrapolation that 40 x 10(6) intact, mature megakaryocytes were being delivered to the lungs every day in the average patient, compared to only 4.0 x 10(6) partially spent megakaryocytes exiting the lungs daily. About 98% of megakaryocyte cytoplasm reaching the lungs did not exit as recognizable megakaryocytes or fragments. The number and state of the megakaryocytes apparently filtered in the lungs is consistent with the hypothesis that megakaryocytes may shed platelets within the pulmonary microvasculature, which may be the primary site of platelet production.

  6. Reynolds number dependence of large-scale friction control in turbulent channel flow

    NASA Astrophysics Data System (ADS)

    Canton, Jacopo; Örlü, Ramis; Chin, Cheng; Hutchins, Nicholas; Monty, Jason; Schlatter, Philipp

    2016-11-01

    The present study reconsiders the control scheme proposed by Schoppa & Hussain, using new direct numerical simulations (DNS). The DNS are performed in a turbulent channel at friction Reynolds number (Reτ) between 104 (employed value in original study) and 550. The aim is to better characterise the physics of the control, investigate the optimal parameters and Re dependence. The former purpose lead to a re-design of the method: moving from imposing the mean flow to the application of a volume force. Results show that the original method only provides transient drag reduction (DR) but actually increases the drag for longer times. The forcing method, instead, leads to sustained DR, and is therefore superior for all wavelengths investigated. A DR of 18% is obtained at the lowest Reτ for a viscous-scaled spanwise wavelength of the vortices of 230; the optimal wavelength increases with Reτ , but the efficiency is reduced, leading to a zero DR for Reτ = 550 , confining the method to low Re for internal flows. Although the findings by Schoppa & Hussain are invalidated, the forcing method is currently implemented in a spatially developing boundary layer to check whether it might lead to a different conclusion in external flows.

  7. Normal zone detectors for a large number of inductively coupled coils

    SciTech Connect

    Owen, E.W.; Shimer, D.W.

    1983-11-28

    In order to protect a set of inductively coupled superconducting magnets, it is necessary to locate and measure normal zone voltages that are small compared with the mutual and self-induced voltages. The method described in this paper uses two sets of voltage measurements to locate and measure one or more normal zones in any number of coupled coils. One set of voltages is the outputs of bridges that balance out the self-induced voltages. The other set of voltages can be the voltages across the coils, although alternatives are possible. The two sets of equations form a single combined set of equations. Each normal zone location or combination of normal zones has a set of these combined equations associated with it. It is demonstrated that the normal zone can be located and the correct set chosen, allowing determination of the size of the normal zone. Only a few operations take place in a working detector: multiplication of a constant, addition, and simple decision-making. In many cases the detector for each coil, although weakly linked to the other detectors, can be considered to be independent.

  8. Normal zone detectors for a large number of inductively coupled coils. Revision 1

    SciTech Connect

    Owen, E.W.; Shimer, D.W.

    1983-11-03

    In order to protect a set of inductively coupled superconducting magnets, it is necessary to locate and measure normal zone voltages that are small compared with the mutual and self-induced voltages. The method described in this paper uses two sets of voltage measurements to locate and measure one or more normal zones in any number of coupled coils. One set of voltages is the outputs of bridges that balance out the self-induced voltages. The other set of voltages can be the voltages across the coils, although alternatives are possible. The two sets of equations form a single combined set of equations. Each normal zone location or combination of normal zones has a set of these combined equations associated with it. It is demonstrated that the normal zone can be located and the correct set chosen, allowing determination of the size of the normal zone. Only a few operations take place in a working detector: multiplication of a constant, addition, and simple decision-making. In many cases the detector for each coil, although weakly linked to the other detectors, can be considered to be independent. The effect on accuracy of changes in the system parameters is discussed.

  9. Normal zone detectors for a large number of inductively coupled coils

    SciTech Connect

    Owen, E.W.; Shimer, D.W.

    1983-01-10

    In order to protect a set of inductively coupled superconducting magnets, it is necessary to locate and measure normal zone voltages that are small compared with the mutual and self-induced voltages. The method described in this report uses two sets of voltage measurements to locate and measure one or more normal zones in any number of coupled coils. One set of voltages is the outputs of bridges that balance out the self-induced voltages The other set of voltages can be the voltages across the coils, although alternatives are possible. The two sets of equations form a single combined set of equations. Each normal zone location or combination of normal zones has a set of these combined equations associated with it. It is demonstrated that the normal zone can be located and the correct set chosen, allowing determination of the size of the normal zone. Only a few operations take plae in a working detector: multiplication of a constant, addition, and simple decision-making. In many cases the detector for each coil, although weakly linked to the other detectors, can be considered to be independent. An example of the detector design is given for four coils with realistic parameters. The effect on accuracy of changes in the system parameters is discussed.

  10. High Reynolds Number Investigation of a Flush-Mounted, S-Duct Inlet With Large Amounts of Boundary Layer Ingestion

    NASA Technical Reports Server (NTRS)

    Berrier, Bobby L.; Carter, Melissa B.; Allan, Brian G.

    2005-01-01

    An experimental investigation of a flush-mounted, S-duct inlet with large amounts of boundary layer ingestion has been conducted at Reynolds numbers up to full scale. The study was conducted in the NASA Langley Research Center 0.3-Meter Transonic Cryogenic Tunnel. In addition, a supplemental computational study on one of the inlet configurations was conducted using the Navier-Stokes flow solver, OVERFLOW. Tests were conducted at Mach numbers from 0.25 to 0.83, Reynolds numbers (based on aerodynamic interface plane diameter) from 5.1 million to 13.9 million (full-scale value), and inlet mass-flow ratios from 0.29 to 1.22, depending on Mach number. Results of the study indicated that increasing Mach number, increasing boundary layer thickness (relative to inlet height) or ingesting a boundary layer with a distorted profile decreased inlet performance. At Mach numbers above 0.4, increasing inlet airflow increased inlet pressure recovery but also increased distortion. Finally, inlet distortion was found to be relatively insensitive to Reynolds number, but pressure recovery increased slightly with increasing Reynolds number.

  11. High Reynolds Number Investigation of a Flush Mounted, S-Duct Inlet With Large Amounts of Boundary Layer Ingestion

    NASA Technical Reports Server (NTRS)

    Berrier, Bobby L.; Carter, Melissa B.; Allan, Brian G.

    2005-01-01

    An experimental investigation of a flush-mounted, S-duct inlet with large amounts of boundary layer ingestion has been conducted at Reynolds numbers up to full scale. The study was conducted in the NASA Langley Research Center 0.3-Meter Transonic Cryogenic Tunnel. In addition, a supplemental computational study on one of the inlet configurations was conducted using the Navier-Stokes flow solver, OVERFLOW. Tests were conducted at Mach numbers from 0.25 to 0.83, Reynolds numbers (based on aerodynamic interface plane diameter) from 5.1 million to 13.9 million (full-scale value), and inlet mass-flow ratios from 0.29 to 1.22, depending on Mach number. Results of the study indicated that increasing Mach number, increasing boundary layer thickness (relative to inlet height) or ingesting a boundary layer with a distorted profile decreased inlet performance. At Mach numbers above 0.4, increasing inlet airflow increased inlet pressure recovery but also increased distortion. Finally, inlet distortion was found to be relatively insensitive to Reynolds number, but pressure recovery increased slightly with increasing Reynolds number.This CD-ROM supplement contains inlet data including: Boundary layer data, Duct static pressure data, performance-AIP (fan face) data, Photos, Tunnel wall P-PTO data and definitions.

  12. Positrons for Antihydrogen with ATRAP: efficient transfer of large positron numbers

    NASA Astrophysics Data System (ADS)

    Storry, Cody; Comeau, Daniel; Dror, Asaf; Fitzakerley, Daniel; George, Matthew; Hessels, Eric; Weel, Matthew

    2012-06-01

    Positrons accumulated in a room-temperature buffer-gas-cooled positron accumulator are efficiently transferred into a superconducting solenoid which houses the ATRAP cryogenic Penning trap for antihydrogen research. The positrons are guided along a 9-meter-long magnetic guide which connects the central field lines of the 0.15-tesla field in the positron accumulator to central magnetic field lines of the superconducting solenoid. Seventy independently-controllable electromagnets are required to overcome the fringing field of the large-bore superconducting solenoid. The guide includes both a 15 degree upward bend and a 105 degree downward bend to account for the orthogonal orientation of the accumulator with respect to the cryogenic Penning trap. Low-energy positrons ejected from the accumulator follow the magnetic field lines within the guide and are transferred into the superconducting solenoid with nearly 100% efficiency. 7 meters of 5-cm-diameter stainless-steel tube, and a 20-mm-long, 1.5-mm-diameter cryogenic pumping restriction ensure that the 10-2 mbar pressure in the accumulator is well isolated from the extreme vacuum required in the Penning trap to allow long antimatter storage times.

  13. Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity.

    PubMed

    Gautam, Pramod; Jha, Pankaj; Kumar, Dhirendra; Tyagi, Shivani; Varma, Binuja; Dash, Debasis; Mukhopadhyay, Arijit; Mukerji, Mitali

    2012-01-01

    Copy number variations (CNVs) have provided a dynamic aspect to the apparently static human genome. We have analyzed CNVs larger than 100 kb in 477 healthy individuals from 26 diverse Indian populations of different linguistic, ethnic and geographic backgrounds. These CNVRs were identified using the Affymetrix 50K Xba 240 Array. We observed 1,425 and 1,337 CNVRs in the deletion and amplification sets, respectively, after pooling data from all the populations. More than 50% of the genes encompassed entirely in CNVs had both deletions and amplifications. There was wide variability across populations not only with respect to CNV extent (ranging from 0.04-1.14% of genome under deletion and 0.11-0.86% under amplification) but also in terms of functional enrichments of processes like keratinization, serine proteases and their inhibitors, cadherins, homeobox, olfactory receptors etc. These did not correlate with linguistic, ethnic, geographic backgrounds and size of populations. Certain processes were near exclusive to deletion (serine proteases, keratinization, olfactory receptors, GPCRs) or duplication (homeobox, serine protease inhibitors, embryonic limb morphogenesis) datasets. Populations having same enriched processes were observed to contain genes from different genomic loci. Comparison of polymorphic CNVRs (5% or more) with those cataloged in Database of Genomic Variants revealed that 78% (2473) of the genes in CNVRs in Indian populations are novel. Validation of CNVs using Sequenom MassARRAY revealed extensive heterogeneity in CNV boundaries. Exploration of CNV profiles in such diverse populations would provide a widely valuable resource for understanding diversity in phenotypes and disease.

  14. Large numbers of vertebrates began rapid population decline in the late 19th century

    PubMed Central

    Li, Haipeng; Xiang-Yu, Jinggong; Dai, Guangyi; Gu, Zhili; Ming, Chen; Yang, Zongfeng; Ryder, Oliver A.; Li, Wen-Hsiung; Fu, Yun-Xin; Zhang, Ya-Ping

    2016-01-01

    Accelerated losses of biodiversity are a hallmark of the current era. Large declines of population size have been widely observed and currently 22,176 species are threatened by extinction. The time at which a threatened species began rapid population decline (RPD) and the rate of RPD provide important clues about the driving forces of population decline and anticipated extinction time. However, these parameters remain unknown for the vast majority of threatened species. Here we analyzed the genetic diversity data of nuclear and mitochondrial loci of 2,764 vertebrate species and found that the mean genetic diversity is lower in threatened species than in related nonthreatened species. Our coalescence-based modeling suggests that in many threatened species the RPD began ∼123 y ago (a 95% confidence interval of 20–260 y). This estimated date coincides with widespread industrialization and a profound change in global living ecosystems over the past two centuries. On average the population size declined by ∼25% every 10 y in a threatened species, and the population size was reduced to ∼5% of its ancestral size. Moreover, the ancestral size of threatened species was, on average, ∼22% smaller than that of nonthreatened species. Because the time period of RPD is short, the cumulative effect of RPD on genetic diversity is still not strong, so that the smaller ancestral size of threatened species may be the major cause of their reduced genetic diversity; RPD explains 24.1–37.5% of the difference in genetic diversity between threatened and nonthreatened species. PMID:27872315

  15. What caused a large number of fatalities in the Tohoku earthquake?

    NASA Astrophysics Data System (ADS)

    Ando, M.; Ishida, M.; Nishikawa, Y.; Mizuki, C.; Hayashi, Y.

    2012-04-01

    The Mw9.0 earthquake caused 20,000 deaths and missing persons in northeastern Japan. 115 years prior to this event, there were three historical tsunamis that struck the region, one of which is a "tsunami earthquake" resulted with a death toll of 22,000. Since then, numerous breakwaters were constructed along the entire northeastern coasts and tsunami evacuation drills were carried out and hazard maps were distributed to local residents on numerous communities. However, despite the constructions and preparedness efforts, the March 11 Tohoku earthquake caused numerous fatalities. The strong shaking lasted three minutes or longer, thus all residents recognized that this is the strongest and longest earthquake that they had been ever experienced in their lives. The tsunami inundated an enormous area at about 560km2 over 35 cities along the coast of northeast Japan. To find out the reasons behind the high number of fatalities due to the March 11 tsunami, we interviewed 150 tsunami survivors at public evacuation shelters in 7 cities mainly in Iwate prefecture in mid-April and early June 2011. Interviews were done for about 30min or longer focused on their evacuation behaviors and those that they had observed. On the basis of the interviews, we found that residents' decisions not to evacuate immediately were partly due to or influenced by earthquake science results. Below are some of the factors that affected residents' decisions. 1. Earthquake hazard assessments turned out to be incorrect. Expected earthquake magnitudes and resultant hazards in northeastern Japan assessed and publicized by the government were significantly smaller than the actual Tohoku earthquake. 2. Many residents did not receive accurate tsunami warnings. The first tsunami warning were too small compared with the actual tsunami heights. 3. The previous frequent warnings with overestimated tsunami height influenced the behavior of the residents. 4. Many local residents above 55 years old experienced

  16. Emission analysis of large number of various passenger electronic devices in aircraft

    NASA Astrophysics Data System (ADS)

    Schüür, Jens; Oppermann, Lukas; Enders, Achim; Nunes, Rafael R.; Oertel, Carl-Henrik

    2016-09-01

    The ever increasing use of PEDs (passenger or portable electronic devices) has put pressure on the aircraft industry as well as operators and administrations to reevaluate established restrictions in PED-use on airplanes in the last years. Any electronic device could cause electromagnetic interference to the electronics of the airplane, especially interference at receiving antennas of sensitive wireless navigation and communication (NAV/COM) systems. This paper presents a measurement campaign in an Airbus A320. 69 test passengers were asked to actively use a combination of about 150 electronic devices including many attached cables, preferentially with a high data load on their buses, to provoke maximal emissions. These emissions were analysed within the cabin as well as at the inputs of aircraft receiving antennas outside of the fuselage. The emissions of the electronic devices as well as the background noise are time-variant, so just comparing only one reference and one transmission measurement is not sufficient. Repeated measurements of both cases lead to a more reliable first analysis. Additional measurements of the absolute received power at the antennas of the airplane allow a good estimation of the real interference potential to aircraft NAV/COM systems. Although there were many measured emissions within the cabin, there were no disturbance signals detectable at the aircraft antennas.

  17. Large Roads Reduce Bat Activity across Multiple Species

    PubMed Central

    Kitzes, Justin; Merenlender, Adina

    2014-01-01

    Although the negative impacts of roads on many terrestrial vertebrate and bird populations are well documented, there have been few studies of the road ecology of bats. To examine the effects of large roads on bat populations, we used acoustic recorders to survey bat activity along ten 300 m transects bordering three large highways in northern California, applying a newly developed statistical classifier to identify recorded calls to the species level. Nightly counts of bat passes were analyzed with generalized linear mixed models to determine the relationship between bat activity and distance from a road. Total bat activity recorded at points adjacent to roads was found to be approximately one-half the level observed at 300 m. Statistically significant road effects were also found for the Brazilian free-tailed bat (Tadarida brasiliensis), big brown bat (Eptesicus fuscus), hoary bat (Lasiurus cinereus), and silver-haired bat (Lasionycteris noctivagans). The road effect was found to be temperature dependent, with hot days both increasing total activity at night and reducing the difference between activity levels near and far from roads. These results suggest that the environmental impacts of road construction may include degradation of bat habitat and that mitigation activities for this habitat loss may be necessary to protect bat populations. PMID:24823689

  18. Large roads reduce bat activity across multiple species.

    PubMed

    Kitzes, Justin; Merenlender, Adina

    2014-01-01

    Although the negative impacts of roads on many terrestrial vertebrate and bird populations are well documented, there have been few studies of the road ecology of bats. To examine the effects of large roads on bat populations, we used acoustic recorders to survey bat activity along ten 300 m transects bordering three large highways in northern California, applying a newly developed statistical classifier to identify recorded calls to the species level. Nightly counts of bat passes were analyzed with generalized linear mixed models to determine the relationship between bat activity and distance from a road. Total bat activity recorded at points adjacent to roads was found to be approximately one-half the level observed at 300 m. Statistically significant road effects were also found for the Brazilian free-tailed bat (Tadarida brasiliensis), big brown bat (Eptesicus fuscus), hoary bat (Lasiurus cinereus), and silver-haired bat (Lasionycteris noctivagans). The road effect was found to be temperature dependent, with hot days both increasing total activity at night and reducing the difference between activity levels near and far from roads. These results suggest that the environmental impacts of road construction may include degradation of bat habitat and that mitigation activities for this habitat loss may be necessary to protect bat populations.

  19. Email-Based Informed Consent: Innovative Method for Reaching Large Numbers of Subjects for Data Mining Research

    NASA Technical Reports Server (NTRS)

    Lee, Lesley R.; Mason, Sara S.; Babiak-Vazquez, Adriana; Ray, Stacie L.; Van Baalen, Mary

    2015-01-01

    Since the 2010 NASA authorization to make the Life Sciences Data Archive (LSDA) and Lifetime Surveillance of Astronaut Health (LSAH) data archives more accessible by the research and operational communities, demand for data has greatly increased. Correspondingly, both the number and scope of requests have increased, from 142 requests fulfilled in 2011 to 224 in 2014, and with some datasets comprising up to 1 million data points. To meet the demand, the LSAH and LSDA Repositories project was launched, which allows active and retired astronauts to authorize full, partial, or no access to their data for research without individual, study-specific informed consent. A one-on-one personal informed consent briefing is required to fully communicate the implications of the several tiers of consent. Due to the need for personal contact to conduct Repositories consent meetings, the rate of consenting has not kept up with demand for individualized, possibly attributable data. As a result, other methods had to be implemented to allow the release of large datasets, such as release of only de-identified data. However the compilation of large, de-identified data sets places a significant resource burden on LSAH and LSDA and may result in diminished scientific usefulness of the dataset. As a result, LSAH and LSDA worked with the JSC Institutional Review Board Chair, Astronaut Office physicians, and NASA Office of General Counsel personnel to develop a "Remote Consenting" process for retrospective data mining studies. This is particularly useful since the majority of the astronaut cohort is retired from the agency and living outside the Houston area. Originally planned as a method to send informed consent briefing slides and consent forms only by mail, Remote Consenting has evolved into a means to accept crewmember decisions on individual studies via their method of choice: email or paper copy by mail. To date, 100 emails have been sent to request participation in eight HRP

  20. Enumeration of protozoan ciliates in activated sludge: determination of replicate number using probability.

    PubMed

    Dubber, Donata; Gray, N F

    2009-08-01

    A new approach to the enumeration of ciliate protozoa in activated sludge is described. A 25 microL sub-sample volume is optimal for routine analysis using a standard slide and 24 x 24 mm cover slip requiring between 20 and 40 min per sub-sample for full enumeration and identification of species. However, to achieve high probability (>or=95%) of recovering all species large numbers of replicates are required (i.e. 23-47). To achieve high probabilities of recovery using less replicates it is necessary to neglect rare species with low densities (<0.5%); based on the assumption that they do not play a significant role in plant performance. The precise number of replicates required for different probabilities of recovering species is determined by conducting an initial pilot survey analysing a minimum of 8 replicates and using a probability equation to determine the optimum replicate number for that particular plant. Six replicate 25 microL sub-samples provided excellent species recovery (90-95% excluding up to 3 rare species), while analysing just two or three replicates, as commonly used in previous wastewater studies, only gave probabilities of 25 and 50% respectively for the same recovery. Ciliate analysis should be completed within 8h of collection with significant changes in community structure occurring beyond this period.

  1. Active Learning in a Large General Physics Classroom.

    NASA Astrophysics Data System (ADS)

    Trousil, Rebecca

    2008-04-01

    In 2004, we launched a new calculus-based, introductory physics sequence at Washington University. Designed as an alternative to our traditional lecture-based sequence, the primary objectives for this new course were to actively engage students in the learning process, to significantly strengthen students' conceptual reasoning skills, to help students develop higher level quantitative problem solving skills necessary for analyzing ``real world'' problems, and to integrate modern physics into the curriculum. This talk will describe our approach, using The Six Ideas That Shaped Physics text by Thomas Moore, to creating an active learning environment in large classes as well as share our perspective on key elements for success and challenges that we face in the large class environment.

  2. The LATT way towards large active primaries for space telescopes

    NASA Astrophysics Data System (ADS)

    Briguglio, Runa; Arcidiacono, Carmelo; Xompero, Marco; Lisi, Franco; Riccardi, Armando; Biasi, Roberto; Patauner, Christian; Gallieni, Daniele; Lazzarini, Paolo; Tintori, Matteo; d'Amato, Francesco; Pucci, Mauro; Duò, Fabrizio; Vettore, Christian; Zuccaro Marchi, Alessandro

    2016-07-01

    The Large Aperture Telescope Technology (LATT) goes beyond the current paradigm of future space telescopes, based on a deformable mirror in the pupil relay. Through the LATT project we demonstrated the concept of a low-weight active primary mirror, whose working principle and control strategy benefit from two decades of advances in adaptive optics for ground-based telescopes. We developed a forty centimeter spherical mirror prototype, with an areal density lower than 17 kg/m2, controlled through contactless voice coil actuators with co-located capacitive position sensors. The prototype was subjected to thermo-vacuum, vibration and optical tests, to push its technical readiness toward level 5. In this paper we present the background and the outcomes of the LATT activities under ESA contract (TRP programme), exploring the concept of a lightweight active primary mirror for space telescopes. Active primaries will open the way to very large segmented apertures, actively shaped, which can be lightweight, deployable and accurately phased once in flight.

  3. Digital Genotyping of Macrosatellites and Multicopy Genes Reveals Novel Biological Functions Associated with Copy Number Variation of Large Tandem Repeats

    PubMed Central

    Quilez, Javier; Hasson, Dan; Borel, Christelle; Warburton, Peter; Sharp, Andrew J.

    2014-01-01

    Tandem repeats are common in eukaryotic genomes, but due to difficulties in assaying them remain poorly studied. Here, we demonstrate the utility of Nanostring technology as a targeted approach to perform accurate measurement of tandem repeats even at extremely high copy number, and apply this technology to genotype 165 HapMap samples from three different populations and five species of non-human primates. We observed extreme variability in copy number of tandemly repeated genes, with many loci showing 5–10 fold variation in copy number among humans. Many of these loci show hallmarks of genome assembly errors, and the true copy number of many large tandem repeats is significantly under-represented even in the high quality ‘finished’ human reference assembly. Importantly, we demonstrate that most large tandem repeat variations are not tagged by nearby SNPs, and are therefore essentially invisible to SNP-based GWAS approaches. Using association analysis we identify many cis correlations of large tandem repeat variants with nearby gene expression and DNA methylation levels, indicating that variations of tandem repeat length are associated with functional effects on the local genomic environment. This includes an example where expansion of a macrosatellite repeat is associated with increased DNA methylation and suppression of nearby gene expression, suggesting a mechanism termed “repeat induced gene silencing”, which has previously been observed only in transgenic organisms. We also observed multiple signatures consistent with altered selective pressures at tandemly repeated loci, suggesting important biological functions. Our studies show that tandemly repeated loci represent a highly variable fraction of the genome that have been systematically ignored by most previous studies, copy number variation of which can exert functionally significant effects. We suggest that future studies of tandem repeat loci will lead to many novel insights into their role in

  4. Reynolds Number Versus Roughness Effects in the Princeton “Super-Pipe” Re-examined in the Context of Large Reynolds Number Asymptotics*

    NASA Astrophysics Data System (ADS)

    Nagib, Hassan; Monkewitz, Peter; Österlund, Jens; Christensen, Kenneth; Adrian, Ronald

    2001-11-01

    Tony Perry, et al. (J. Fluid Mech., v. 439, 2001) have recently contributed to the discussion concerning the reasons for systematic deviations with Re’s (Reynolds numbers) in the Princeton “Super-Pipe” data. Perry et al. demonstrate that the deviation of the constant within the “log-law” is compatible with the “Colebrook formula” for transitionally rough pipes. Since the experiments were completed, Lex Smits and the Princeton Group have argued that the pipe is smooth for at least the majority of the Re range. Here we show that the observed deviations are equally compatible with the finite Re effects obtained from a methodology based on matched asymptotic expansion techniques proposed by us (see abstract at this meeting), in which the infinite-Re limit of the “log-law”, as well as its correction for large but finite Re’s, are derived in a systematic manner. As argued by Perry et al., in these cases one cannot rely on the variation of the centerline velocity with Re to extract the log-law coefficients. The values of the “Karman constant” extracted using either interpretation is significantly lower than the 0.436 value originally proposed and it is closer to the value of 0.38 based on our recent work on boundary layers; see two publications by Österlund et al. (Phys. of Fluids, v. 12 no. 1 and no. 9, 2001). *Supported by NSF, AFOSR & ERCOFTAC.

  5. Large area flexible SERS active substrates using engineered nanostructures

    NASA Astrophysics Data System (ADS)

    Chung, Aram J.; Huh, Yun Suk; Erickson, David

    2011-07-01

    Surface enhanced Raman scattering (SERS) is an analytical sensing method that provides label-free detection, molecularly specific information, and extremely high sensitivity. The Raman enhancement that makes this method attractive is mainly attributed to the local amplification of the incident electromagnetic field that occurs when a surface plasmon mode is excited at a metallic nanostructure. Here, we present a simple, cost effective method for creating flexible, large area SERS-active substrates using a new technique we call shadow mask assisted evaporation (SMAE). The advantage of large, flexible SERS substrates such as these is they have more area for multiplexing and can be incorporated into irregular surfaces such as clothing. We demonstrate the formation of four different types of nanostructure arrays (pillar, nib, ellipsoidal cylinder, and triangular tip) by controlling the evaporation angle, substrate rotation, and deposition rate of metals onto anodized alumina nanoporous membranes as large as 27 mm. In addition, we present experimental results showing how a hybrid structure comprising of gold nanospheres embedded in a silver nano-pillar structure can be used to obtain a 50× SERS enhancement over the raw nanoparticles themselves.Surface enhanced Raman scattering (SERS) is an analytical sensing method that provides label-free detection, molecularly specific information, and extremely high sensitivity. The Raman enhancement that makes this method attractive is mainly attributed to the local amplification of the incident electromagnetic field that occurs when a surface plasmon mode is excited at a metallic nanostructure. Here, we present a simple, cost effective method for creating flexible, large area SERS-active substrates using a new technique we call shadow mask assisted evaporation (SMAE). The advantage of large, flexible SERS substrates such as these is they have more area for multiplexing and can be incorporated into irregular surfaces such as

  6. The number of patients with severe encapsulating peritoneal sclerosis is decreasing in a large referral center in Germany

    PubMed Central

    Kitterer, Daniel; Braun, Niko; Alscher, M Dominik; Segerer, Stephan; Latus, Joerg

    2016-01-01

    Background Encapsulating peritoneal sclerosis (EPS) is the most severe complication associated with long-term peritoneal dialysis (PD). Previous studies noticed a sharp decline in new patients with severe EPS. We investigated the number of severe EPS patients in our large referral center over almost 20 years. Methods All late-stage EPS patients who underwent major surgery due to extensive symptoms caused by bowel obstruction (vomiting, abdominal pain, and weight loss) between March 1997 and end of December 2015 in our hospital were included in the present study. An index was calculated between the number of patients with severe EPS and the implanted PD catheters in our center. Results Between 1979 and 2015, a total of 745 PD catheters were implanted in our center, with a steady increase in the numbers between 2003 and 2015. First patient with severe EPS was treated in 1998, then a rise in the number of patients with EPS was present in 2005. The number of patients with EPS peaked in the period of 2010–2012 (15 patients within 3 years). Afterward, both the absolute numbers and the index between the number of patients with severe EPS and the implanted catheters demonstrated a prominent reduction in the next 3-year period from 2013 to 2015. Conclusion Our data support the hypothesis that there seems to be a decrease of late-stage EPS incidence over the last years, but data about milder or asymptomatic patients are lacking. This should be kept in mind while giving the patients information about different renal replacement therapies at start of dialysis. PMID:27540308

  7. A large-domain approach for calculating ship boundary layers and wakes and wave fields for nonzero Froude number

    SciTech Connect

    Tahara, Y.; Stern, F.

    1996-09-01

    A large-domain approach is developed for calculating ship boundary layers and wakes and wave fields for nonzero Froude number. The Reynolds-averaged Navier-Stokes and continuity equations are solved with the Baldwin-Lomax turbulence model, exact nonlinear kinematic and approximate dynamic free-surface boundary conditions, and a body/free-surface conforming grid. The results are validated through comparisons with data for the Series 60 C{sub B} = 0.6 ship model at low and high Froude numbers and results of a precursory interactive approach. Both approaches yield satisfactory results; however, the large-domain results indicate improved resolution of the flow close to the hull and wake centerplane and of the Froucle number differences due to near-wall turbulence modeling and non-linear free-surface boundary conditions. Additional evaluation is provided through discussion of the recent CFD Workshop Tokyo 1994, where both methods were among the best. Last, some concluding remarks are made. 20 refs., 7 figs.

  8. Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii.

    PubMed

    Pritchard, V L; Abadía-Cardoso, A; Garza, J C

    2012-09-01

    Hybridization of cutthroat trout and steelhead/rainbow trout is ubiquitous where they are sympatric, either naturally or owing to introductions. The ability to detect hybridization and introgression between the two species would be greatly improved by the development of more diagnostic markers validated across the two species' many phylogenetic lineages. Here, we describe 81 novel genetic markers and associated assays for discriminating the genomes of these sister species. These diagnostic nucleotide polymorphisms were discovered by sequencing of rainbow trout expressed sequence tags (ESTs) in a diverse panel of both cutthroat trout and steelhead/rainbow trout. The resulting markers were validated in a large number of lineages of both species, including all extant subspecies of cutthroat trout and most of the lineages of rainbow trout that are found in natural sympatry with cutthroat trout or used in stocking practices. Most of these markers (79%) distinguish genomic regions for all lineages of the two species, but a small number do not reliably diagnose coastal, westslope and/or other subspecies of cutthroat trout. Surveys of natural populations and hatchery strains of trout and steelhead found rare occurrences of the alternative allele, which may be due to either previous introgression or shared polymorphism. The availability of a large number of genetic markers for distinguishing genomic regions originating in these sister species will allow the detection of both recent and more distant hybridization events, facilitate the study of the evolutionary dynamics of hybridization and provide a powerful set of tools for the conservation and management of both species.

  9. Ultrabright fluorescent silica particles with a large number of complex spectra excited with a single wavelength for multiplex applications.

    PubMed

    Palantavida, S; Peng, B; Sokolov, I

    2017-02-08

    We report on a novel approach to synthesize ultrabright fluorescent silica particles capable of producing a large number of complex spectra. The spectra can be excited using a single wavelength which is paramount in quantitative fluorescence imaging, flow cytometry and sensing applications. The approach employs the physical encapsulation of organic fluorescent molecules inside a nanoporous silica matrix with no dye leakage. As was recently demonstrated, such an encapsulation allowed for the encapsulation of very high concentrations of organic dyes without quenching their fluorescent efficiency. As a result, dye molecules are distanced within ∼5 nm from each other; it theoretically allows for efficient exchange of excitation energy via Förster resonance energy transfer (FRET). Here we present the first experimental demonstration of the encapsulation of fluorescent dyes in the FRET sequence. Attaining a FRET sequence of up to five different dyes is presented. The number of distinguishable spectra can be further increased by using different relative concentrations of encapsulated dyes. Combining these approaches allows for creating a large number of ultrabright fluorescent particles with substantially different fluorescence spectra. We also demonstrate the utilization of these particles for potential multiplexing applications. Though fluorescence spectra of the obtained multiplex probes are typically overlapping, they can be distinguished by using standard linear decomposition algorithms.

  10. On the variational computation of a large number of vibrational energy levels and wave functions for medium-sized molecules

    NASA Astrophysics Data System (ADS)

    Mátyus, Edit; Šimunek, Ján; Császár, Attila G.

    2009-08-01

    In a recent publication [J. Chem. Phys. 127, 084102 (2007)], the nearly variational DEWE approach (DEWE denotes Discrete variable representation of the Watson Hamiltonian using the Eckart frame and an Exact inclusion of a potential energy surface expressed in arbitrarily chosen coordinates) was developed to compute a large number of (ro)vibrational eigenpairs for medium-sized semirigid molecules having a single well-defined minimum. In this publication, memory, CPU, and hard disk usage requirements of DEWE, and thus of any DEWE-type approach, are carefully considered, analyzed, and optimized. Particular attention is paid to the sparse matrix-vector multiplication, the most expensive part of the computation, and to rate-determining steps in the iterative Lanczos eigensolver, including spectral transformation, reorthogonalization, and restart of the iteration. Algorithmic improvements are discussed in considerable detail. Numerical results are presented for the vibrational band origins of the C12H4 and C12H2D2 isotopologues of the methane molecule. The largest matrix handled on a personal computer during these computations is of the size of (4•108)×(4•108). The best strategy for determining vibrational eigenpairs depends largely on the actual details of the required computation. Nevertheless, for a usual scenario requiring a large number of the lowest eigenpairs of the Hamiltonian matrix the combination of the thick-restart Lanczos method, shift-fold filtering, and periodic reorthogonalization appears to result in the computationally most feasible approach.

  11. Evaluation of Origin Ensemble algorithm for image reconstruction for pixelated solid-state detectors with large number of channels

    NASA Astrophysics Data System (ADS)

    Kolstein, M.; De Lorenzo, G.; Mikhaylova, E.; Chmeissani, M.; Ariño, G.; Calderón, Y.; Ozsahin, I.; Uzun, D.

    2013-04-01

    The Voxel Imaging PET (VIP) Pathfinder project intends to show the advantages of using pixelated solid-state technology for nuclear medicine applications. It proposes designs for Positron Emission Tomography (PET), Positron Emission Mammography (PEM) and Compton gamma camera detectors with a large number of signal channels (of the order of 106). For PET scanners, conventional algorithms like Filtered Back-Projection (FBP) and Ordered Subset Expectation Maximization (OSEM) are straightforward to use and give good results. However, FBP presents difficulties for detectors with limited angular coverage like PEM and Compton gamma cameras, whereas OSEM has an impractically large time and memory consumption for a Compton gamma camera with a large number of channels. In this article, the Origin Ensemble (OE) algorithm is evaluated as an alternative algorithm for image reconstruction. Monte Carlo simulations of the PET design are used to compare the performance of OE, FBP and OSEM in terms of the bias, variance and average mean squared error (MSE) image quality metrics. For the PEM and Compton camera designs, results obtained with OE are presented.

  12. Evaluation of Origin Ensemble algorithm for image reconstruction for pixelated solid-state detectors with large number of channels

    PubMed Central

    Kolstein, M.; De Lorenzo, G.; Mikhaylova, E.; Chmeissani, M.; Ariño, G.; Calderón, Y.; Ozsahin, I.; Uzun, D.

    2013-01-01

    The Voxel Imaging PET (VIP) Pathfinder project intends to show the advantages of using pixelated solid-state technology for nuclear medicine applications. It proposes designs for Positron Emission Tomography (PET), Positron Emission Mammography (PEM) and Compton gamma camera detectors with a large number of signal channels (of the order of 106). For PET scanners, conventional algorithms like Filtered Back-Projection (FBP) and Ordered Subset Expectation Maximization (OSEM) are straightforward to use and give good results. However, FBP presents difficulties for detectors with limited angular coverage like PEM and Compton gamma cameras, whereas OSEM has an impractically large time and memory consumption for a Compton gamma camera with a large number of channels. In this article, the Origin Ensemble (OE) algorithm is evaluated as an alternative algorithm for image reconstruction. Monte Carlo simulations of the PET design are used to compare the performance of OE, FBP and OSEM in terms of the bias, variance and average mean squared error (MSE) image quality metrics. For the PEM and Compton camera designs, results obtained with OE are presented. PMID:23814604

  13. Evaluation of Origin Ensemble algorithm for image reconstruction for pixelated solid-state detectors with large number of channels.

    PubMed

    Kolstein, M; De Lorenzo, G; Mikhaylova, E; Chmeissani, M; Ariño, G; Calderón, Y; Ozsahin, I; Uzun, D

    2013-04-29

    The Voxel Imaging PET (VIP) Pathfinder project intends to show the advantages of using pixelated solid-state technology for nuclear medicine applications. It proposes designs for Positron Emission Tomography (PET), Positron Emission Mammography (PEM) and Compton gamma camera detectors with a large number of signal channels (of the order of 10(6)). For PET scanners, conventional algorithms like Filtered Back-Projection (FBP) and Ordered Subset Expectation Maximization (OSEM) are straightforward to use and give good results. However, FBP presents difficulties for detectors with limited angular coverage like PEM and Compton gamma cameras, whereas OSEM has an impractically large time and memory consumption for a Compton gamma camera with a large number of channels. In this article, the Origin Ensemble (OE) algorithm is evaluated as an alternative algorithm for image reconstruction. Monte Carlo simulations of the PET design are used to compare the performance of OE, FBP and OSEM in terms of the bias, variance and average mean squared error (MSE) image quality metrics. For the PEM and Compton camera designs, results obtained with OE are presented.

  14. Where syntax meets math: Right Intraparietal Sulcus activation in response to grammatical number agreement violations

    PubMed Central

    Carreiras, Manuel; Carr, Lindsay; Barber, Horacio A.; Hernandez, Arturo

    2009-01-01

    Previous research has shown that the processing of words referring to actions activated motor areas. Here we show activation of the right intraparietal sulcus, an area that has been associated with quantity processing, when participants are asked to read pairs of words with number agreement violations as opposed to phrases with gender agreement violations or with no violation. In addition, we show activation in the left premotor and left inferior frontal areas when either gender or number agreement is violated. We argue that number violation automatically activates processes linked to quantity processing which are not directly related to language mechanisms. PMID:19800410

  15. Technologies for imaging neural activity in large volumes

    PubMed Central

    Ji, Na; Freeman, Jeremy; Smith, Spencer L.

    2017-01-01

    Neural circuitry has evolved to form distributed networks that act dynamically across large volumes. Collecting data from individual planes, conventional microscopy cannot sample circuitry across large volumes at the temporal resolution relevant to neural circuit function and behaviors. Here, we review emerging technologies for rapid volume imaging of neural circuitry. We focus on two critical challenges: the inertia of optical systems, which limits image speed, and aberrations, which restrict the image volume. Optical sampling time must be long enough to ensure high-fidelity measurements, but optimized sampling strategies and point spread function engineering can facilitate rapid volume imaging of neural activity within this constraint. We also discuss new computational strategies for the processing and analysis of volume imaging data of increasing size and complexity. Together, optical and computational advances are providing a broader view of neural circuit dynamics, and help elucidate how brain regions work in concert to support behavior. PMID:27571194

  16. High-resolution copy number analysis of paired normal-tumor samples from diffuse large B cell lymphoma.

    PubMed

    Sebastián, Elena; Alcoceba, Miguel; Martín-García, David; Blanco, Óscar; Sanchez-Barba, Mercedes; Balanzategui, Ana; Marín, Luis; Montes-Moreno, Santiago; González-Barca, Eva; Pardal, Emilia; Jiménez, Cristina; García-Álvarez, María; Clot, Guillem; Carracedo, Ángel; Gutiérrez, Norma C; Sarasquete, M Eugenia; Chillón, Carmen; Corral, Rocío; Prieto-Conde, M Isabel; Caballero, M Dolores; Salaverria, Itziar; García-Sanz, Ramón; González, Marcos

    2016-01-01

    Copy number analysis can be useful for assessing prognosis in diffuse large B cell lymphoma (DLBCL). We analyzed copy number data from tumor samples of 60 patients diagnosed with DLBCL de novo and their matched normal samples. We detected 63 recurrent copy number alterations (CNAs), including 33 gains, 30 losses, and nine recurrent acquired copy number neutral loss of heterozygosity (CNN-LOH). Interestingly, 20 % of cases acquired CNN-LOH of 6p21 locus, which involves the HLA region. In normal cells, there were no CNAs but we observed CNN-LOH involving some key lymphoma regions such as 6p21 and 9p24.1 (5 %) and 17p13.1 (2.5 %) in DLBCL patients. Furthermore, a model with some specific CNA was able to predict the subtype of DLBCL, 1p36.32 and 10q23.31 losses being restricted to germinal center B cell-like (GCB) DLBCL. In contrast, 8p23.3 losses and 11q24.3 gains were strongly associated with the non-GCB subtype. A poor prognosis was associated with biallelic inactivation of TP53 or 18p11.32 losses, while prognosis was better in cases carrying 11q24.3 gains. In summary, CNA abnormalities identify specific DLBCL groups, and we describe CNN-LOH in germline cells from DLBCL patients that are associated with genes that probably play a key role in DLBCL development.

  17. Modelling high Reynolds number wall-turbulence interactions in laboratory experiments using large-scale free-stream turbulence

    NASA Astrophysics Data System (ADS)

    Dogan, Eda; Hearst, R. Jason; Ganapathisubramani, Bharathram

    2017-03-01

    A turbulent boundary layer subjected to free-stream turbulence is investigated in order to ascertain the scale interactions that dominate the near-wall region. The results are discussed in relation to a canonical high Reynolds number turbulent boundary layer because previous studies have reported considerable similarities between these two flows. Measurements were acquired simultaneously from four hot wires mounted to a rake which was traversed through the boundary layer. Particular focus is given to two main features of both canonical high Reynolds number boundary layers and boundary layers subjected to free-stream turbulence: (i) the footprint of the large scales in the logarithmic region on the near-wall small scales, specifically the modulating interaction between these scales, and (ii) the phase difference in amplitude modulation. The potential for a turbulent boundary layer subjected to free-stream turbulence to `simulate' high Reynolds number wall-turbulence interactions is discussed. The results of this study have encouraging implications for future investigations of the fundamental scale interactions that take place in high Reynolds number flows as it demonstrates that these can be achieved at typical laboratory scales.

  18. Multiplex titration RT-PCR: rapid determination of gene expression patterns for a large number of genes

    NASA Technical Reports Server (NTRS)

    Nebenfuhr, A.; Lomax, T. L.

    1998-01-01

    We have developed an improved method for determination of gene expression levels with RT-PCR. The procedure is rapid and does not require extensive optimization or densitometric analysis. Since the detection of individual transcripts is PCR-based, small amounts of tissue samples are sufficient for the analysis of expression patterns in large gene families. Using this method, we were able to rapidly screen nine members of the Aux/IAA family of auxin-responsive genes and identify those genes which vary in message abundance in a tissue- and light-specific manner. While not offering the accuracy of conventional semi-quantitative or competitive RT-PCR, our method allows quick screening of large numbers of genes in a wide range of RNA samples with just a thermal cycler and standard gel analysis equipment.

  19. Atomic Number Dependence of Hadron Production at Large Transverse Momentum in 300 GeV Proton--Nucleus Collisions

    DOE R&D Accomplishments Database

    Cronin, J. W.; Frisch, H. J.; Shochet, M. J.; Boymond, J. P.; Mermod, R.; Piroue, P. A.; Sumner, R. L.

    1974-07-15

    In an experiment at the Fermi National Accelerator Laboratory we have compared the production of large transverse momentum hadrons from targets of W, Ti, and Be bombarded by 300 GeV protons. The hadron yields were measured at 90 degrees in the proton-nucleon c.m. system with a magnetic spectrometer equipped with 2 Cerenkov counters and a hadron calorimeter. The production cross-sections have a dependence on the atomic number A that grows with P{sub 1}, eventually leveling off proportional to A{sup 1.1}.

  20. Arrangement of scale-interaction and large-scale modulation in high Reynolds number turbulent boundary layers

    NASA Astrophysics Data System (ADS)

    Baars, Woutijn J.; Hutchins, Nicholas; Marusic, Ivan

    2015-11-01

    Interactions between small- and large-scale motions are inherent in the near-wall dynamics of wall-bounded flows. We here examine the scale-interaction embedded within the streamwise velocity component. Data were acquired using hot-wire anemometry in ZPG turbulent boundary layers, for Reynolds numbers ranging from Reτ ≡ δUτ / ν ~ 2800 to 22800. After first decomposing velocity signals into contributions from small- and large-scales, we then represent the time-varying small-scale energy with time series of its instantaneous amplitude and instantaneous frequency, via a wavelet-based method. Features of the scale-interaction are inferred from isocorrelation maps, formed by correlating the large-scale velocity with its concurrent small-scale amplitude and frequency. Below the onset of the log-region, the physics constitutes aspects of amplitude modulation and frequency modulation. Time shifts, associated with the correlation extrema--representing the lead/lag of the small-scale signatures relative to the large-scales--are shown to be governed by inner-scaling. Wall-normal trends of time shifts are explained by considering the arrangement of scales in the log- and intermittent-regions, and how they relate to stochastic top-down and bottom-up processes.

  1. Low frequency of broadly neutralizing HIV antibodies during chronic infection even in quaternary epitope targeting antibodies containing large numbers of somatic mutations.

    PubMed

    Hicar, Mark D; Chen, Xuemin; Kalams, Spyros A; Sojar, Hakimuddin; Landucci, Gary; Forthal, Donald N; Spearman, Paul; Crowe, James E

    2016-02-01

    Neutralizing antibodies (Abs) are thought to be a critical component of an appropriate HIV vaccine response. It has been proposed that Abs recognizing conformationally dependent quaternary epitopes on the HIV envelope (Env) trimer may be necessary to neutralize diverse HIV strains. A number of recently described broadly neutralizing monoclonal Abs (mAbs) recognize complex and quaternary epitopes. Generally, many such Abs exhibit extensive numbers of somatic mutations and unique structural characteristics. We sought to characterize the native antibody (Ab) response against circulating HIV focusing on such conformational responses, without a prior selection based on neutralization. Using a capture system based on VLPs incorporating cleaved envelope protein, we identified a selection of B cells that produce quaternary epitope targeting Abs (QtAbs). Similar to a number of broadly neutralizing Abs, the Ab genes encoding these QtAbs showed extensive numbers of somatic mutations. However, when expressed as recombinant molecules, these Abs failed to neutralize virus or mediate ADCVI activity. Molecular analysis showed unusually high numbers of mutations in the Ab heavy chain framework 3 region of the variable genes. The analysis suggests that large numbers of somatic mutations occur in Ab genes encoding HIV Abs in chronically infected individuals in a non-directed, stochastic, manner.

  2. Low frequency of broadly neutralizing HIV antibodies during chronic infection even in quaternary epitope targeting antibodies containing large numbers of somatic mutations

    PubMed Central

    Hicar, Mark D.; Chen, Xuemin; Kalams, Spyros A.; Sojar, Hakimuddin; Landucci, Gary; Forthal, Donald N.; Spearman, Paul; Crowe, James E.

    2016-01-01

    Neutralizing antibodies (Abs) are thought to be a critical component of an appropriate HIV vaccine response. It has been proposed that Abs recognizing conformationally dependent quaternary epitopes on the HIV envelope (Env) trimer may be necessary to neutralize diverse HIV strains. A number of recently described broadly neutralizing monoclonal Abs (mAbs) recognize complex and quaternary epitopes. Generally, many such Abs exhibit extensive numbers of somatic mutations and unique structural characteristics. We sought to characterize the native antibody (Ab) response against circulating HIV focusing on such conformational responses, without a prior selection based on neutralization. Using a capture system based on VLPs incorporating cleaved envelope protein, we identified a selection of B cells that produce quaternary epitope targeting Abs (QtAbs). Similar to a number of broadly neutralizing Abs, the Ab genes encoding these QtAbs showed extensive numbers of somatic mutations. However, when expressed as recombinant molecules, these Abs failed to neutralize virus or mediate ADCVI activity. Molecular analysis showed unusually high numbers of mutations in the Ab heavy chain framework 3 region of the variable genes. The analysis suggests that large numbers of somatic mutations occur in Ab genes encoding HIV Abs in chronically infected individuals in a non-directed, stochastic, manner. PMID:26748387

  3. Oxidative Regulation of Large Conductance Calcium-Activated Potassium Channels

    PubMed Central

    Tang, Xiang D.; Daggett, Heather; Hanner, Markus; Garcia, Maria L.; McManus, Owen B.; Brot, Nathan; Weissbach, Herbert; Heinemann, Stefan H.; Hoshi, Toshinori

    2001-01-01

    Reactive oxygen/nitrogen species are readily generated in vivo, playing roles in many physiological and pathological conditions, such as Alzheimer's disease and Parkinson's disease, by oxidatively modifying various proteins. Previous studies indicate that large conductance Ca2+-activated K+ channels (BKCa or Slo) are subject to redox regulation. However, conflicting results exist whether oxidation increases or decreases the channel activity. We used chloramine-T, which preferentially oxidizes methionine, to examine the functional consequences of methionine oxidation in the cloned human Slo (hSlo) channel expressed in mammalian cells. In the virtual absence of Ca2+, the oxidant shifted the steady-state macroscopic conductance to a more negative direction and slowed deactivation. The results obtained suggest that oxidation enhances specific voltage-dependent opening transitions and slows the rate-limiting closing transition. Enhancement of the hSlo activity was partially reversed by the enzyme peptide methionine sulfoxide reductase, suggesting that the upregulation is mediated by methionine oxidation. In contrast, hydrogen peroxide and cysteine-specific reagents, DTNB, MTSEA, and PCMB, decreased the channel activity. Chloramine-T was much less effective when concurrently applied with the K+ channel blocker TEA, which is consistent with the possibility that the target methionine lies within the channel pore. Regulation of the Slo channel by methionine oxidation may represent an important link between cellular electrical excitability and metabolism. PMID:11222629

  4. Experimental Surface Pressure Data Obtained on 65 deg Delta Wing Across Reynolds Number and Mach Number Ranges. Vol. 4: Large-radius leading edge

    NASA Technical Reports Server (NTRS)

    Chu, Julio; Luckring, James M.

    1996-01-01

    An experimental wind tunnel test of a 65 deg delta wing model with interchangeable leading edges was conducted in the Langley National Transonic Facility (NTF). The objective was to investigate the effects of Reynolds and Mach numbers on slender-wing leading-edge vortex flows with four values of wing leading-edge bluntness. Experimentally obtained pressure data are presented without analysis in tabulated and graphical formats across a Reynolds number range of 6 x 10(exp 6) to 120 x 10(exp 6) at a Mach number of 0.85 and across a Mach number range of 0.4 to 0.9 at Reynolds numbers of 6 x 10(exp 6) and 60 x 10(exp 6). Normal-force and pitching-moment coefficient plots for these Reynolds number and Mach number ranges are also presented.

  5. Large area flexible SERS active substrates using engineered nanostructures.

    PubMed

    Chung, Aram J; Huh, Yun Suk; Erickson, David

    2011-07-01

    Surface enhanced Raman scattering (SERS) is an analytical sensing method that provides label-free detection, molecularly specific information, and extremely high sensitivity. The Raman enhancement that makes this method attractive is mainly attributed to the local amplification of the incident electromagnetic field that occurs when a surface plasmon mode is excited at a metallic nanostructure. Here, we present a simple, cost effective method for creating flexible, large area SERS-active substrates using a new technique we call shadow mask assisted evaporation (SMAE). The advantage of large, flexible SERS substrates such as these is they have more area for multiplexing and can be incorporated into irregular surfaces such as clothing. We demonstrate the formation of four different types of nanostructure arrays (pillar, nib, ellipsoidal cylinder, and triangular tip) by controlling the evaporation angle, substrate rotation, and deposition rate of metals onto anodized alumina nanoporous membranes as large as 27 mm. In addition, we present experimental results showing how a hybrid structure comprising of gold nanospheres embedded in a silver nano-pillar structure can be used to obtain a 50× SERS enhancement over the raw nanoparticles themselves.

  6. Analyzing Number Composition and Decomposition Activities in Kindergarten from a Numeracy Perspective

    ERIC Educational Resources Information Center

    Tsamir, Pessia; Tirosh, Dina; Levenson, Esther; Tabach, Michal; Barkai, Ruthi

    2015-01-01

    This study explores two number composition and decomposition activities from a numeracy perspective. Both activities have the same mathematical structure but each employs different tools and contexts. Twenty kindergarten children engaged individually with these activities. Verbal utterances as well as actions of the child and interviewer were…

  7. A genome-wide association study in large white and landrace pig populations for number piglets born alive.

    PubMed

    Bergfelder-Drüing, Sarah; Grosse-Brinkhaus, Christine; Lind, Bianca; Erbe, Malena; Schellander, Karl; Simianer, Henner; Tholen, Ernst

    2015-01-01

    The number of piglets born alive (NBA) per litter is one of the most important traits in pig breeding due to its influence on production efficiency. It is difficult to improve NBA because the heritability of the trait is low and it is governed by a high number of loci with low to moderate effects. To clarify the biological and genetic background of NBA, genome-wide association studies (GWAS) were performed using 4,012 Large White and Landrace pigs from herdbook and commercial breeding companies in Germany (3), Austria (1) and Switzerland (1). The animals were genotyped with the Illumina PorcineSNP60 BeadChip. Because of population stratifications within and between breeds, clusters were formed using the genetic distances between the populations. Five clusters for each breed were formed and analysed by GWAS approaches. In total, 17 different significant markers affecting NBA were found in regions with known effects on female reproduction. No overlapping significant chromosome areas or QTL between Large White and Landrace breed were detected.

  8. Numerical Investigation on Large Scale Eddy Structure in Unsteady Pipe Elbow Flow at High Reynolds Number Conditions with Large Eddy Simulation Approach

    NASA Astrophysics Data System (ADS)

    Tanaka, Masaaki; Ohshima, Hiroyuki

    Flow induced vibration in primary cooling system of the Japan Sodium cooled Fast Reactor (JSFR) has been investigated. The primary cooling system consists of a large diameter pipe and a pipe elbow with short curvature radius corresponding to its diameter (short-elbow). Flow-induced vibration by flow through the short-elbow is an important issue in design study of the JSFR, because it may affect to structural integrity of the piping. In this paper, numerical simulations for several pipe elbows with different pipe diameters and curvature radii in literature were conducted at Reynolds number conditions from Re=500 to 1.47x107 to investigate unsteady flow behavior through the short-elbow, including validation study of an in-house LES code (MUGTHES). Numerical results in each condition were compared with the experimental results in literature. Unsteady flow characteristics and pressure fluctuation generation mechanism in the short-elbow were clarified in relation to the large-scale eddy motion.

  9. Gyrase activity and number of copies of the gyrase B subunit gene in Haemophilus influenzae.

    PubMed Central

    Cabrera-Juárez, E; Setlow, J K

    1985-01-01

    Gyrase activities in extracts of various strains of Haemophilus influenzae can differ by more than an order of magnitude (J. K. Setlow, E. Cabrera-Juárez, W. L. Albritton, D. Spikes, and A. Mutschler, J. Bacteriol. 164:525-534, 1985). Measurements of in vitro activity and copy number indicated that most of these differences arose from variations in the number of copies of the gene for the gyrase B subunit, with some strains containing multicopy plasmids coding for that subunit. The quantitative relationship between gyrase and copy number depended on the mutations in the plasmids and in the host. The gyrase and copy number were considerably lower in plasmid-bearing strains carrying the prophage HP1c1. Two mutations affecting gyrase that are apparently regulatory caused an increase in gyrase without a concomitant increase in copy number. The possibility that the in vivo gyrase activity did not reflect the in vitro data was explored by measurement of alkaline phosphatase and ATPase activity in the extracts. Alkaline phosphatase activity increased with increasing gyrase activity measured in vitro, but ATPase activity did not. We conclude that extra supercoiling enhanced transcription of the alkaline phosphatase gene but not the ATPase gene and that it is unlikely that there is much discrepancy between gyrase activity assayed in vitro and the activity in the cell. PMID:2997116

  10. Two-dimensional wave-number spectral analysis techniques for phase contrast imaging turbulence imaging data on large helical device

    SciTech Connect

    Michael, C. A.; Tanaka, K.; Kawahata, K.; Vyacheslavov, L.; Sanin, A.

    2015-09-15

    An analysis method for unfolding the spatially resolved wave-number spectrum and phase velocity from the 2D CO{sub 2} laser phase contrast imaging system on the large helical device is described. This is based on the magnetic shear technique which identifies propagation direction from 2D spatial Fourier analysis of images detected by a 6 × 8 detector array. Because the strongest modes have wave-number at the lower end of the instrumental k range, high resolution spectral techniques are necessary to clearly resolve the propagation direction and hence the spatial distribution of fluctuations along the probing laser beam. Multiple-spatial point cross-correlation averaging is applied before calculating the spatial power spectrum. Different methods are compared, and it is found that the maximum entropy method (MEM) gives best results. The possible generation of artifacts from the over-narrowing of spectra are investigated and found not to be a significant problem. The spatial resolution Δρ (normalized radius) around the peak wave-number, for conventional Fourier analysis, is ∼0.5, making physical interpretation difficult, while for MEM, Δρ ∼ 0.1.

  11. The Isolation and Enrichment of Large Numbers of Highly Purified Mouse Spleen Dendritic Cell Populations and Their In Vitro Equivalents.

    PubMed

    Vremec, David

    2016-01-01

    Dendritic cells (DCs) form a complex network of cells that initiate and orchestrate immune responses against a vast array of pathogenic challenges. Developmentally and functionally distinct DC subtypes differentially regulate T-cell function. Importantly it is the ability of DC to capture and process antigen, whether from pathogens, vaccines, or self-components, and present it to naive T cells that is the key to their ability to initiate an immune response. Our typical isolation procedure for DC from murine spleen was designed to efficiently extract all DC subtypes, without bias and without alteration to their in vivo phenotype, and involves a short collagenase digestion of the tissue, followed by selection for cells of light density and finally negative selection for DC. The isolation procedure can accommodate DC numbers that have been artificially increased via administration of fms-like tyrosine kinase 3 ligand (Flt3L), either directly through a series of subcutaneous injections or by seeding with an Flt3L secreting murine melanoma. Flt3L may also be added to bone marrow cultures to produce large numbers of in vitro equivalents of the spleen DC subsets. Total DC, or their subsets, may be further purified using immunofluorescent labeling and flow cytometric cell sorting. Cell sorting may be completely bypassed by separating DC subsets using a combination of fluorescent antibody labeling and anti-fluorochrome magnetic beads. Our procedure enables efficient separation of the distinct DC subsets, even in cases where mouse numbers or flow cytometric cell sorting time is limiting.

  12. Productive Activities and Subjective Well-Being among Older Adults: The Influence of Number of Activities and Time Commitment

    ERIC Educational Resources Information Center

    Baker, Lindsey A.; Cahalin, Lawrence P.; Gerst, Kerstin; Burr, Jeffrey A.

    2005-01-01

    This study examines relationships among three measures of subjective well-being (life satisfaction, happiness and depressive symptoms), and two global measures of productive activity (number of activities and time commitment). We argue that participation in multiple productive activities should increase subjective well-being because these…

  13. Monthly Deaths Number And Concomitant Environmental Physical Activity: 192 Months Observation (1990-2005)

    NASA Astrophysics Data System (ADS)

    Stoupel, E.; Kalediene, R.; Petrauskiene, J.; Starkuviene, S.; Abramson, E.; Israelevich, P.; Sulkes, J.

    2007-12-01

    Human life and health state are dependent on many endogenous and exogenous influence factors. The aim of this study is to check the possible links between monthly deaths distribution and concomitant activity of three groups of cosmophysical factors: solar (SA), geomagnetic (GMA) and cosmic ray (CRA) activities. 192 months death number in years 1990-2005 (n=674004) at the Republic of Lithuania were analyzed. Total and both gender data were considered. In addition to the total death numbers, groups of ischemic heart disease (IHD), stroke (CVA), non-cardiovascular (NCV), accident, traffic accident and suicide-related deaths were studied. Sunspot number and solar radio flux (for SA), Ap, Cp and Am indices (for GMA) and neutron activity on the Earth s surface (for CRA) were the environmental physical activity parameters used in this study. Yearly and monthly deaths distributions were also studied. Pearson correlation coefficients (r) and their probabilities (p) were calculated. Multivariate analysis was conducted. Results revealed: 1) significant correlation of monthly deaths number with CRA (total, stroke, NCV and suicides) and inverse with SA and GMA; 2) significant correlation of monthly number of traffic accidents number with SA and GMA, and inverse with CRA; 3) a strong negative relationship between year and IHD/CVA victims number (an evidence for growing role of stroke in cardiovascular mortality); 4) significant links of rising cardiovascular deaths number at the beginning of the year and traffic accidents victims at the end of the year. It is concluded that CRA is related to monthly deaths distribution.

  14. Active disturbance rejection in large flexible space structures

    NASA Technical Reports Server (NTRS)

    Parlos, Alexander G.; Sunkel, John W.

    1990-01-01

    The design of an active control law for the rejection of persistent disturbances, in large space structures is presented. The control system design approach is based on a deterministic model of the disturbances and it optimizes the magnitude of the disturbance that the structure can tolerate without violating certain predetermined constraints. In addition to closed-loop stability, the explicit treatment of state, control, and control rate constraints, such as structural displacement and control actuator effort, guarantees that the final design will exhibit desired performance characteristics. The technique is applied to a simple two-bay truss structure, and its response is compared with that obtained using a linear-quadratic-Gaussian/loop-transfer-recovery (LQG/LTR) compensator. Preliminary results indicate that the proposed control system can reject persistent disturbances of greater magnitude by utilizing most of the available control, while limiting the structural displacements to within desired tolerances.

  15. Structural and functional maturation of active zones in large synapses.

    PubMed

    Cano, Raquel; Torres-Benito, Laura; Tejero, Rocío; Biea, Anca I; Ruiz, Rocío; Betz, William J; Tabares, Lucía

    2013-02-01

    Virtually all functions of the nervous system rely upon synapses, the sites of communication between neurons and between neurons and other cells. Synapses are complex structures, each one comprising hundreds of different types of molecules working in concert. They are organized by adhesive and scaffolding molecules that align presynaptic vesicular release sites, namely, active zones, with postsynaptic neurotransmitter receptors, thereby allowing rapid and reliable intercellular communication. Most synapses are relatively small, and acting alone exerts little effect on their postsynaptic partners. Some, however, are much larger and stronger, reliably driving the postsynaptic cell to its action potential threshold, acting essentially as electrical relays of excitation. These large synapses are among the best understood, and two of these are the subject of this review, namely, the vertebrate neuromuscular junction and the calyx of Held synapse in the mammalian auditory pathway of the brain stem. Both synapses undergo through a complex and well-coordinated maturation process, during which time the molecular elements and the biophysical properties of the secretory machinery are continuously adjusted to the synapse size and to the functional requirements. We here review the morphological and functional changes occurring during postnatal maturation, noting particular similarities and differences between these two large synapses.

  16. Large-Aperture Membrane Active Phased-Array Antennas

    NASA Technical Reports Server (NTRS)

    Karasik, Boris; McGrath, William; Leduc, Henry

    2009-01-01

    Large-aperture phased-array microwave antennas supported by membranes are being developed for use in spaceborne interferometric synthetic aperture radar systems. There may also be terrestrial uses for such antennas supported on stationary membranes, large balloons, and blimps. These antennas are expected to have areal mass densities of about 2 kg/sq m, satisfying a need for lightweight alternatives to conventional rigid phased-array antennas, which have typical areal mass densities between 8 and 15 kg/sq m. The differences in areal mass densities translate to substantial differences in total mass in contemplated applications involving aperture areas as large as 400 sq m. A membrane phased-array antenna includes patch antenna elements in a repeating pattern. All previously reported membrane antennas were passive antennas; this is the first active membrane antenna that includes transmitting/receiving (T/R) electronic circuits as integral parts. Other integral parts of the antenna include a network of radio-frequency (RF) feed lines (more specifically, a corporate feed network) and of bias and control lines, all in the form of flexible copper strip conductors on flexible polymeric membranes. Each unit cell of a prototype antenna (see Figure 1) contains a patch antenna element and a compact T/R module that is compatible with flexible membrane circuitry. There are two membrane layers separated by a 12.7-mm air gap. Each membrane layer is made from a commercially available flexible circuit material that, as supplied, comprises a 127-micron-thick polyimide dielectric layer clad on both sides with 17.5-micron-thick copper layers. The copper layers are patterned into RF, bias, and control conductors. The T/R module is located on the back side of the ground plane and is RF-coupled to the patch element via a slot. The T/R module is a hybrid multilayer module assembled and packaged independently and attached to the membrane array. At the time of reporting the information for

  17. Large-eddy simulation of circular cylinder flow at subcritical Reynolds number: Turbulent wake and sound radiation

    NASA Astrophysics Data System (ADS)

    Guo, Li; Zhang, Xing; He, Guowei

    2016-02-01

    The flows past a circular cylinder at Reynolds number 3900 are simulated using large-eddy simulation (LES) and the far-field sound is calculated from the LES results. A low dissipation energy-conserving finite volume scheme is used to discretize the incompressible Navier-Stokes equations. The dynamic global coefficient version of the Vreman's subgrid scale (SGS) model is used to compute the sub-grid stresses. Curle's integral of Lighthill's acoustic analogy is used to extract the sound radiated from the cylinder. The profiles of mean velocity and turbulent fluctuations obtained are consistent with the previous experimental and computational results. The sound radiation at far field exhibits the characteristic of a dipole and directivity. The sound spectra display the -5/3 power law. It is shown that Vreman's SGS model in company with dynamic procedure is suitable for LES of turbulence generated noise.

  18. Genome-Wide Survey of Large Rare Copy Number Variants in Alzheimer’s Disease Among Caribbean Hispanics

    PubMed Central

    Ghani, Mahdi; Pinto, Dalila; Lee, Joseph H.; Grinberg, Yakov; Sato, Christine; Moreno, Danielle; Scherer, Stephen W.; Mayeux, Richard; St. George-Hyslop, Peter; Rogaeva, Ekaterina

    2012-01-01

    Recently genome-wide association studies have identified significant association between Alzheimer’s disease (AD) and variations in CLU, PICALM, BIN1, CR1, MS4A4/MS4A6E, CD2AP, CD33, EPHA1, and ABCA7. However, the pathogenic variants in these loci have not yet been found. We conducted a genome-wide scan for large copy number variation (CNV) in a dataset of Caribbean Hispanic origin (554 controls and 559 AD cases that were previously investigated in a SNP-based genome-wide association study using Illumina HumanHap 650Y platform). We ran four CNV calling algorithms to obtain high-confidence calls for large CNVs (>100 kb) that were detected by at least two algorithms. Global burden analyses did not reveal significant differences between cases and controls in CNV rate, distribution of deletions or duplications, total or average CNV size; or number of genes affected by CNVs. However, we observed a nominal association between AD and a ∼470 kb duplication on chromosome 15q11.2 (P = 0.037). This duplication, encompassing up to five genes (TUBGCP5, CYFIP1, NIPA2, NIPA1, and WHAMML1) was present in 10 cases (2.6%) and 3 controls (0.8%). The dosage increase of CYFIP1 and NIPA1 genes was further confirmed by quantitative PCR. The current study did not detect CNVs that affect novel AD loci identified by recent genome-wide association studies. However, because the array technology used in our study has limitations in detecting small CNVs, future studies must carefully assess novel AD genes for the presence of disease-related CNVs. PMID:22384383

  19. Large number of rebounding/founder HIV variants emerge from multifocal infection in lymphatic tissues after treatment interruption.

    PubMed

    Rothenberger, Meghan K; Keele, Brandon F; Wietgrefe, Stephen W; Fletcher, Courtney V; Beilman, Gregory J; Chipman, Jeffrey G; Khoruts, Alexander; Estes, Jacob D; Anderson, Jodi; Callisto, Samuel P; Schmidt, Thomas E; Thorkelson, Ann; Reilly, Cavan; Perkey, Katherine; Reimann, Thomas G; Utay, Netanya S; Nganou Makamdop, Krystelle; Stevenson, Mario; Douek, Daniel C; Haase, Ashley T; Schacker, Timothy W

    2015-03-10

    Antiretroviral therapy (ART) suppresses HIV replication in most individuals but cannot eradicate latently infected cells established before ART was initiated. Thus, infection rebounds when treatment is interrupted by reactivation of virus production from this reservoir. Currently, one or a few latently infected resting memory CD4 T cells are thought be the principal source of recrudescent infection, but this estimate is based on peripheral blood rather than lymphoid tissues (LTs), the principal sites of virus production and persistence before initiating ART. We, therefore, examined lymph node (LN) and gut-associated lymphoid tissue (GALT) biopsies from fully suppressed subjects, interrupted therapy, monitored plasma viral load (pVL), and repeated biopsies on 12 individuals as soon as pVL became detectable. Isolated HIV RNA-positive (vRNA+) cells were detected by in situ hybridization in LTs obtained before interruption in several patients. After interruption, multiple foci of vRNA+ cells were detected in 6 of 12 individuals as soon as pVL was measureable and in some subjects, in more than one anatomic site. Minimal estimates of the number of rebounding/founder (R/F) variants were determined by single-gene amplification and sequencing of viral RNA or DNA from peripheral blood mononuclear cells and plasma obtained at or just before viral recrudescence. Sequence analysis revealed a large number of R/F viruses representing recrudescent viremia from multiple sources. Together, these findings are consistent with the origins of recrudescent infection by reactivation from many latently infected cells at multiple sites. The inferred large pool of cells and sites to rekindle recrudescent infection highlights the challenges in eradicating HIV.

  20. Modification of the large-scale features of high Reynolds number wall turbulence by passive surface obtrusions

    NASA Astrophysics Data System (ADS)

    Monty, J. P.; Allen, J. J.; Lien, K.; Chong, M. S.

    2011-12-01

    A high Reynolds number boundary-layer wind-tunnel facility at New Mexico State University was fitted with a regularly distributed braille surface. The surface was such that braille dots were closely packed in the streamwise direction and sparsely spaced in the spanwise direction. This novel surface had an unexpected influence on the flow: the energy of the very large-scale features of wall turbulence (approximately six-times the boundary-layer thickness in length) became significantly attenuated, even into the logarithmic region. To the author's knowledge, this is the first experimental study to report a modification of `superstructures' in a rough-wall turbulent boundary layer. The result gives rise to the possibility that flow control through very small, passive surface roughness may be possible at high Reynolds numbers, without the prohibitive drag penalty anticipated heretofore. Evidence was also found for the uninhibited existence of the near-wall cycle, well known to smooth-wall-turbulence researchers, in the spanwise space between roughness elements.

  1. Drug testing and flow cytometry analysis on a large number of uniform sized tumor spheroids using a microfluidic device

    PubMed Central

    Patra, Bishnubrata; Peng, Chien-Chung; Liao, Wei-Hao; Lee, Chau-Hwang; Tung, Yi-Chung

    2016-01-01

    Three-dimensional (3D) tumor spheroid possesses great potential as an in vitro model to improve predictive capacity for pre-clinical drug testing. In this paper, we combine advantages of flow cytometry and microfluidics to perform drug testing and analysis on a large number (5000) of uniform sized tumor spheroids. The spheroids are formed, cultured, and treated with drugs inside a microfluidic device. The spheroids can then be harvested from the device without tedious operation. Due to the ample cell numbers, the spheroids can be dissociated into single cells for flow cytometry analysis. Flow cytometry provides statistical information in single cell resolution that makes it feasible to better investigate drug functions on the cells in more in vivo-like 3D formation. In the experiments, human hepatocellular carcinoma cells (HepG2) are exploited to form tumor spheroids within the microfluidic device, and three anti-cancer drugs: Cisplatin, Resveratrol, and Tirapazamine (TPZ), and their combinations are tested on the tumor spheroids with two different sizes. The experimental results suggest the cell culture format (2D monolayer vs. 3D spheroid) and spheroid size play critical roles in drug responses, and also demonstrate the advantages of bridging the two techniques in pharmaceutical drug screening applications. PMID:26877244

  2. Drug testing and flow cytometry analysis on a large number of uniform sized tumor spheroids using a microfluidic device

    NASA Astrophysics Data System (ADS)

    Patra, Bishnubrata; Peng, Chien-Chung; Liao, Wei-Hao; Lee, Chau-Hwang; Tung, Yi-Chung

    2016-02-01

    Three-dimensional (3D) tumor spheroid possesses great potential as an in vitro model to improve predictive capacity for pre-clinical drug testing. In this paper, we combine advantages of flow cytometry and microfluidics to perform drug testing and analysis on a large number (5000) of uniform sized tumor spheroids. The spheroids are formed, cultured, and treated with drugs inside a microfluidic device. The spheroids can then be harvested from the device without tedious operation. Due to the ample cell numbers, the spheroids can be dissociated into single cells for flow cytometry analysis. Flow cytometry provides statistical information in single cell resolution that makes it feasible to better investigate drug functions on the cells in more in vivo-like 3D formation. In the experiments, human hepatocellular carcinoma cells (HepG2) are exploited to form tumor spheroids within the microfluidic device, and three anti-cancer drugs: Cisplatin, Resveratrol, and Tirapazamine (TPZ), and their combinations are tested on the tumor spheroids with two different sizes. The experimental results suggest the cell culture format (2D monolayer vs. 3D spheroid) and spheroid size play critical roles in drug responses, and also demonstrate the advantages of bridging the two techniques in pharmaceutical drug screening applications.

  3. Large number of replacement polymorphisms in rapidly evolving genes of Drosophila. Implications for genome-wide surveys of DNA polymorphism.

    PubMed Central

    Schmid, K J; Nigro, L; Aquadro, C F; Tautz, D

    1999-01-01

    We present a survey of nucleotide polymorphism of three novel, rapidly evolving genes in populations of Drosophila melanogaster and D. simulans. Levels of silent polymorphism are comparable to other loci, but the number of replacement polymorphisms is higher than that in most other genes surveyed in D. melanogaster and D. simulans. Tests of neutrality fail to reject neutral evolution with one exception. This concerns a gene located in a region of high recombination rate in D. simulans and in a region of low recombination rate in D. melanogaster, due to an inversion. In the latter case it shows a very low number of polymorphisms, presumably due to selective sweeps in the region. Patterns of nucleotide polymorphism suggest that most substitutions are neutral or nearly neutral and that weak (positive and purifying) selection plays a significant role in the evolution of these genes. At all three loci, purifying selection of slightly deleterious replacement mutations appears to be more efficient in D. simulans than in D. melanogaster, presumably due to different effective population sizes. Our analysis suggests that current knowledge about genome-wide patterns of nucleotide polymorphism is far from complete with respect to the types and range of nucleotide substitutions and that further analysis of differences between local populations will be required to understand the forces more completely. We note that rapidly diverging and nearly neutrally evolving genes cannot be expected only in the genome of Drosophila, but are likely to occur in large numbers also in other organisms and that their function and evolution are little understood so far. PMID:10581279

  4. Sertoli Cells Maintain Leydig Cell Number and Peritubular Myoid Cell Activity in the Adult Mouse Testis

    PubMed Central

    Monteiro, Ana; Milne, Laura; Cruickshanks, Lyndsey; Jeffrey, Nathan; Guillou, Florian; Freeman, Tom C.; Mitchell, Rod T.; Smith, Lee B.

    2014-01-01

    The Sertoli cells are critical regulators of testis differentiation and development. In the adult, however, their known function is restricted largely to maintenance of spermatogenesis. To determine whether the Sertoli cells regulate other aspects of adult testis biology we have used a novel transgenic mouse model in which Amh-Cre induces expression of the receptor for Diphtheria toxin (iDTR) specifically within Sertoli cells. This causes controlled, cell-specific and acute ablation of the Sertoli cell population in the adult animal following Diphtheria toxin injection. Results show that Sertoli cell ablation leads to rapid loss of all germ cell populations. In addition, adult Leydig cell numbers decline by 75% with the remaining cells concentrated around the rete and in the sub-capsular region. In the absence of Sertoli cells, peritubular myoid cell activity is reduced but the cells retain an ability to exclude immune cells from the seminiferous tubules. These data demonstrate that, in addition to support of spermatogenesis, Sertoli cells are required in the adult testis both for retention of the normal adult Leydig cell population and for support of normal peritubular myoid cell function. This has implications for our understanding of male reproductive disorders and wider androgen-related conditions affecting male health. PMID:25144714

  5. 76 FR 66945 - Agency Information Collection Activities: No Agency Form Number; File Number OMB 25, Extension of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-28

    ... ACTION: 60-Day Notice of Information Collection Under Review: OMB-25, Special Immigrant Visas for Fourth... Immigrant Visas for Fourth ] Preference Employment-Based Broadcasters. (3) Agency form number, if any, and... Employment-based immigrant broadcasters. (5) An estimate of the total number of respondents and the amount...

  6. Large-scale field trials of active immunizing agents

    PubMed Central

    Cockburn, W. Charles

    1955-01-01

    In this discussion of the methods to be used in large-scale field trials of active immunizing agents and of the results to be expected from such trials, special emphasis is laid on pertussis vaccine trials in Great Britain. After a review of the criteria for strictly controlled field studies and of the investigation of typhoid vaccines conducted in 1904-08 by the Antityphoid Committee of the British Army, the author describes the pertussis vaccine studies which have been and are now being carried by the Whooping-Cough Immunization Committee of the Medical Research Council of Great Britain. The original strictly controlled trials have been completed and the results published. Studies are now being made of vaccines prepared by different methods and evaluated both in the field and in the laboratory. Each vaccine is given to some 2000-3000 children of 4-6 months to 4 years of age. By the end of the studies 30 000-40 000 children will have been followed up for a period of two years. Since in the current studies all the children are vaccinated and none are left as unvaccinated controls, the relative and not the absolute protective value of the vaccines will be measured. PMID:13270079

  7. Automated calculation of the evapotranspiration and crop coefficients for a large number of peatland sites using diurnal groundwater table fluctuations

    NASA Astrophysics Data System (ADS)

    Maurer, Eike; Bechtold, Michel; Dettmann, Ullrich; Tiemeyer, Bärbel

    2014-05-01

    Evapotranspiration is one of the main processes controlling peatland hydrology. Greenhouse gas (GHG) emissions from peatlands are in turn strongly controlled by the groundwater table. Through the increasing political and scientific interest to reduce GHG emissions, monitoring and modelling strategies to optimize re-wetting strategies and to quantify GHG emissions are needed. To achieve these aims, an accurate determination of the evapotranspiration as an essential part of the water balance is required. Many different approaches are known to determine the evapotranspiration. They are mostly either expensive or hard to parameterize. Plant specific crop coefficients (Kc-values) are an option to calculate plant-specific evapotranspiration but due to the lack of Kc-values for typical peatland vegetation types more data on evapotranspiration from peatlands in the temperate zone are required. Furthermore, simple methods to estimate evapotranspiration are needed especially for monitoring projects. Diurnal groundwater table fluctuations caused by root water uptake and groundwater inflow can be used to calculate daily evapotranspiration rates. This approach was first described by White (1932) who compared groundwater recovery rates at night to the decline during daytime. Besides the groundwater table data only the specific yield (Sy) is needed to calculate evapotranspiration. However, the method has some limitations because not all days can be evaluated which leads to data gaps during rainy and very dry or very wet periods. This study presents an automated method to calculate the specific yield, evapotranspiration and crop coefficients for a large number of sites covering all major peatland types and their typical land uses in Germany. As an input for our method, only groundwater level, precipitation and grass reference evapotranspiration (ET0) data is required. In a first step, the groundwater level data was smoothed by a LOESS function. In a second step, site-specific SY

  8. An improved multiphase lattice Boltzmann flux solver for three-dimensional flows with large density ratio and high Reynolds number

    NASA Astrophysics Data System (ADS)

    Wang, Y.; Shu, C.; Yang, L. M.

    2015-12-01

    An improved multiphase lattice Boltzmann flux solver (MLBFS) is proposed in this work for effective simulation of three-dimensional (3D) multiphase flows with large density ratio and high Reynolds number. As a finite volume scheme, the MLBFS originally proposed in [27] applies the finite volume method to solve for macroscopic flow variables directly. The fluxes are reconstructed locally at each cell interface by using the standard LBM solutions. Due to the modeling error of the standard LBM, the reconstructed fluxes deviate from those in the Navier-Stokes equations; and to compensate this error, a complex tensor is introduced in the original MLBFS. However, the computation of the tensor introduces additional complexity and usually needs a relatively thicker interface thickness to maintain numerical stability, which makes the solver be complex and inefficient in the 3D case. To remove this drawback, in this work, a theoretical analysis to the formulations obtained from the Chapman-Enskog expansion is conducted. It is shown that the modeling error can be effectively removed by modifying the computation of the equilibrium density distribution function. With this improvement, the proposed 3D MLBFS not only avoids the calculation of the compensation tensor but also is able to maintain numerical stability with very thin interface thickness. Several benchmark cases, including the challenging droplet impacting on a dry surface, head-on collisions of binary droplets and droplet splashing on a thin film with density ratio 1000 and Reynolds number up to 3000, are studied to validate the proposed solver. The obtained results agree well with the published data.

  9. Is Active Learning Like Broccoli? Student Perceptions of Active Learning in Large Lecture Classes

    ERIC Educational Resources Information Center

    Smith, C. Veronica; Cardaciotto, LeeAnn

    2011-01-01

    Although research suggests that active learning is associated with positive outcomes (e.g., memory, test performance), use of such techniques can be difficult to implement in large lecture-based classes. In the current study, 1,091 students completed out-of-class group exercises to complement course material in an Introductory Psychology class.…

  10. International Airport Impacts to Air Quality: Size and Related Properties of Large Increases in Ultrafine Particle Number Concentrations.

    PubMed

    Hudda, N; Fruin, S A

    2016-04-05

    We measured particle size distributions and spatial patterns of particle number (PN) and particle surface area concentrations downwind from the Los Angeles International Airport (LAX) where large increases (over local background) in PN concentrations routinely extended 18 km downwind. These elevations were mostly comprised of ultrafine particles smaller than 40 nm. For a given downwind distance, the greatest increases in PN concentrations, along with the smallest mean sizes, were detected at locations under the landing jet trajectories. The smaller size of particles in the impacted area, as compared to the ambient urban aerosol, increased calculated lung deposition fractions to 0.7-0.8 from 0.5-0.7. A diffusion charging instrument (DiSCMini), that simulates alveolar lung deposition, measured a fivefold increase in alveolar-lung deposited surface area concentrations 2-3 km downwind from the airport (over local background), decreasing steadily to a twofold increase 18 km downwind. These ratios (elevated lung-deposited surface area over background) were lower than the corresponding ratios for elevated PN concentrations, which decreased from tenfold to twofold over the same distance, but the spatial patterns of elevated concentrations were similar. It appears that PN concentration can serve as a nonlinear proxy for lung deposited surface area downwind of major airports.

  11. Large Eddy Simulation study of the development of finite-channel lock-release currents at high Grashof numbers

    NASA Astrophysics Data System (ADS)

    Ooi, Seng-Keat

    2005-11-01

    Lock-exchange gravity current flows produced by the instantaneous release of a heavy fluid are investigated using 3-D well resolved Large Eddy Simulation simulations at Grashof numbers up to 8*10^9. It is found the 3-D simulations correctly predict a constant front velocity over the initial slumping phase and a front speed decrease proportional to t-1/3 (the time t is measured from the release) over the inviscid phase, in agreement with theory. The evolution of the current in the simulations is found to be similar to that observed experimentally by Hacker et al. (1996). The effect of the dynamic LES model on the solutions is discussed. The energy budget of the current is discussed and the contribution of the turbulent dissipation to the total dissipation is analyzed. The limitations of less expensive 2D simulations are discussed; in particular their failure to correctly predict the spatio-temporal distributions of the bed shear stresses which is important in determining the amount of sediment the gravity current can entrain in the case in advances of a loose bed.

  12. Meta-ethnography 25 years on: challenges and insights for synthesising a large number of qualitative studies

    PubMed Central

    2014-01-01

    Studies that systematically search for and synthesise qualitative research are becoming more evident in health care, and they can make an important contribution to patient care. Our team was funded to complete a meta-ethnography of patients’ experience of chronic musculoskeletal pain. It has been 25 years since Noblit and Hare published their core text on meta-ethnography, and the current health research environment brings additional challenges to researchers aiming to synthesise qualitative research. Noblit and Hare propose seven stages of meta-ethnography which take the researcher from formulating a research idea to expressing the findings. These stages are not discrete but form part of an iterative research process. We aimed to build on the methods of Noblit and Hare and explore the challenges of including a large number of qualitative studies into a qualitative systematic review. These challenges hinge upon epistemological and practical issues to be considered alongside expectations about what determines high quality research. This paper describes our method and explores these challenges. Central to our method was the process of collaborative interpretation of concepts and the decision to exclude original material where we could not decipher a concept. We use excerpts from our research team’s reflexive statements to illustrate the development of our methods. PMID:24951054

  13. Characterization of high-copy-number retrotransposons from the large genomes of the louisiana iris species and their use as molecular markers.

    PubMed Central

    Kentner, Edward K; Arnold, Michael L; Wessler, Susan R

    2003-01-01

    The Louisiana iris species Iris brevicaulis and I. fulva are morphologically and karyotypically distinct yet frequently hybridize in nature. A group of high-copy-number TY3/gypsy-like retrotransposons was characterized from these species and used to develop molecular markers that take advantage of the abundance and distribution of these elements in the large iris genome. The copy number of these IRRE elements (for iris retroelement), is approximately 1 x 10(5), accounting for approximately 6-10% of the approximately 10,000-Mb haploid Louisiana iris genome. IRRE elements are transcriptionally active in I. brevicaulis and I. fulva and their F(1) and backcross hybrids. The LTRs of the elements are more variable than the coding domains and can be used to define several distinct IRRE subfamilies. Transposon display or S-SAP markers specific to two of these subfamilies have been developed and are highly polymorphic among wild-collected individuals of each species. As IRRE elements are present in each of 11 iris species tested, the marker system has the potential to provide valuable comparative data on the dynamics of retrotransposition in large plant genomes. PMID:12807789

  14. Millennium-scale sunspot number reconstruction: evidence for an unusually active sun since the 1940s.

    PubMed

    Usoskin, Ilya G; Solanki, Sami K; Schüssler, Manfred; Mursula, Kalevi; Alanko, Katja

    2003-11-21

    The extension of the sunspot number series backward in time is of considerable interest for dynamo theory, solar, stellar, and climate research. We have used records of the (10)Be concentration in polar ice to reconstruct the average sunspot activity level for the period between the year 850 to the present. Our method uses physical models for processes connecting the (10)Be concentration with the sunspot number. The reconstruction shows reliably that the period of high solar activity during the last 60 years is unique throughout the past 1150 years. This nearly triples the time interval for which such a statement could be made previously.

  15. Longitudinal Aerodynamic Characteristics to Large Angles of Attack of a Cruciform Missile Configuration at a Mach Number of 2

    NASA Technical Reports Server (NTRS)

    Spahr, J. R.

    1954-01-01

    The lift, pitching-moment, and drag characteristics of a missile configuration having a body of fineness ratio 9.33 and a cruciform triangular wing and tail of aspect ratio 4 were measured at a Mach number of 1.99 and a Reynolds number of 6.0 million, based on the body length. The tests were performed through an angle-of-attack range of -5 deg to 28 deg to investigate the effects on the aerodynamic characteristics of roll angle, wing-tail interdigitation, wing deflection, and interference among the components (body, wing, and tail). Theoretical lift and moment characteristics of the configuration and its components were calculated by the use of existing theoretical methods which have been modified for application to high angles of attack, and these characteristics are compared with experiment. The lift and drag characteristics of all combinations of the body, wing, and tail were independent of roll angle throughout the angle-of-attack range. The pitching-moment characteristics of the body-wing and body-wing-tail combinations, however, were influenced significantly by the roll angle at large angles of attack (greater than 10 deg). A roll from 0 deg (one pair of wing panels horizontal) to 45 deg caused a forward shift in the center of pressure which was of the same magnitude for both of these combinations, indicating that this shift originated from body-wing interference effects. A favorable lift-interference effect (lift of the combination greater than the sum of the lifts of the components) and a rearward shift in the center of pressure from a position corresponding to that for the components occurred at small angles of attack when the body was combined with either the exposed wing or tail surfaces. These lift and center-of-pressure interference effects were gradually reduced to zero as the angle of attack was increased to large values. The effect of wing-tail interference, which influenced primarily the pitching-moment characteristics, is dependent on the distance

  16. Longitudinal Aerodynamic Characteristics to Large Angles of Attack of a Cruciform Missile Configuration at a Mach Number of 2

    NASA Technical Reports Server (NTRS)

    Spahr, J Richard

    1954-01-01

    The lift, pitching-moment, and drag characteristics of a missile configuration having a body of fineness ratio 9.33 and a cruciform triangular wing and tail of aspect ratio 4 were measured at a Mach number of 1.99 and a Reynolds number of 6.0 million, based on the body length. The tests were performed through an angle-of-attack range of -5 deg to 28 deg to investigate the effects on the aerodynamic characteristics of roll angle, wing-tail interdigitation, wing deflection, and interference among the components (body, wing, and tail). Theoretical lift and moment characteristics of the configuration and its components were calculated by the use of existing theoretical methods which have been modified for application to high angles of attack, and these characteristics are compared with experiment. The lift and drag characteristics of all combinations of the body, wing, and tail were independent of roll angle throughout the angle-of-attack range. The pitching-moment characteristics of the body-wing and body-wing- tail combinations, however, were influenced significantly by the roll angle at large angles of attack (greater than 10 deg). A roll from 0 deg (one pair of wing panels horizontal) to 45 deg caused a forward shift in the center of pressure which was of the same magnitude for both of these combinations, indicating that this shift originated from body-wing interference effects. A favorable lift - interference effect (lift of the combination greater than the sum of the lifts of the components) and a rearward shift in the center of pressure from a position corresponding to that for the components occurred at small angles of attack when the body was combined with either the exposed wing or tail surfaces. These lift and center-of-pressure interference effects were gradually reduced to zero as the angle of attack was increased to large values. The effect of wing-tail interference, which influenced primarily the pitching-moment characteristics, is dependent on the

  17. 77 FR 3486 - Agency Information Collection Activities: No Agency Form Number, File Number OMB 25, Extension of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-24

    ...] [FR Doc No: 2012-1278] DEPARTMENT OF HOMELAND SECURITY U.S. Citizenship and Immigration Services... Control No. 1615-0064. The Department of Homeland Security, U.S. Citizenship and Immigration Services... sponsoring the collection: No Agency Form Number; File No. OMB-25, U.S. Citizenship and Immigration...

  18. Reported frequency of physical activity in a large epidemiological study: relationship to specific activities and repeatability over time

    PubMed Central

    2011-01-01

    Background How overall physical activity relates to specific activities and how reported activity changes over time may influence interpretation of observed associations between physical activity and health. We examine the relationships between various physical activities self-reported at different times in a large cohort study of middle-aged UK women. Methods At recruitment, Million Women Study participants completed a baseline questionnaire including questions on frequency of strenuous and of any physical activity. About 3 years later 589,896 women also completed a follow-up questionnaire reporting the hours they spent on a range of specific activities. Time spent on each activity was used to estimate the associated excess metabolic equivalent hours (MET-hours) and this value was compared across categories of physical activity reported at recruitment. Additionally, 18,655 women completed the baseline questionnaire twice, at intervals of up to 4 years; repeatability over time was assessed using the weighted kappa coefficient (κweighted) and absolute percentage agreement. Results The average number of hours per week women reported doing specific activities was 14.0 for housework, 4.5 for walking, 3.0 for gardening, 0.2 for cycling, and 1.4 for all strenuous activity. Time spent and the estimated excess MET-hours associated with each activity increased with increasing frequency of any or strenuous physical activity reported at baseline (tests for trend, P < 0.003), although the associations for housework were by far the weakest (Spearman correlations, 0.01 and -0.03 respectively for housework, and 0.11-0.37 for all other activities). Repeatability of responses to physical activity questions on the baseline questionnaire declined significantly over time. For strenuous activity, absolute agreement was 64% (κweighted = 0.71) for questionnaires administered less than 6 months apart, and 52% (κweighted = 0.51) for questionnaires more than 2 years apart. Corresponding

  19. The Calibration of a Large Number of Scientific Instruments for the Auroral Spatial Structures Probe Sub-Orbital Mission.

    NASA Astrophysics Data System (ADS)

    Swenson, A.; Miller, J.; Neilsen, T. L.; Fish, C. S.; Swenson, C.

    2014-12-01

    The Auroral Spatial Structures Probe (ASSP) is a NASA sounding rocket mission to be launched in the early January 2015 time frame from the Poker Flat Research Range. The primary scientific objective of this mission is to determine the contribution of small spatial and temporal scale fluctuations of the electric fields to the larger-scale processes during active aurora. This will be accomplished through the use of a constellation of six small payloads ejected at high velocity from a sounding rocket. The multiple baseline observations of the electric and magnetic fields will be used to observe variability of both the E-field and the Poynting flux. These observations will be placed in the context of available data, including winds, large scale E-fields, and proxy conductivity (airglow images) observations.Each sub-payload will carry a crossed pair of electric field double-probe sensors, a three-axis magnetometer, and a Langmuir probe. In total there are eight of each instrument type requireing calibration. Since the instruments need to be calibrated over temperature a full calibration of a single instrument is very time-consuming. The decision was made to automate the calibration process. Measurements were taken using a relay switch-box connecting the instruments to test sources. Calibration data were saved into a database. Using post-processing scripts on these databases a calibration for each instrument at each temperature point was made. This approach is a prototype process that might be used for calibrating a large constellation of CubeSats with similar instruments. In this poster we review the ASSP science and mission, and the results of the pre-flight calibration of the science instruments.

  20. 77 FR 38650 - Agency Information Collection Activities: Refugee/Asylee Adjusting Status, OMB Control Number...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-28

    ... SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: Refugee/Asylee... Services Statistical Data for Refugee/Asylee Adjusting Status; OMB Control No.1615-0070. The Department of.../Collection: Refugee/Asylee Adjusting Status. (3) Agency form number, if any, and the applicable component...

  1. Learning Activity Package, Physical Science. LAP Numbers 1, 2, 3, and 4.

    ERIC Educational Resources Information Center

    Williams, G. J.

    These four units of the Learning Activity Packages (LAPs) for individualized instruction in physical science cover measuring techniques, operations of instruments, metric system heat, matter, energy, elements, atomic numbers, isotopes, molecules, mixtures, compounds, physical and chemical properties, liquids, solids, and gases. Each unit contains…

  2. 78 FR 5477 - Agency Information Collection Activities: InfoPass System, No Form Number; Extension, Without...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-25

    ... SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: InfoPass... Collection. (2) Title of the Form/Collection: InfoPass System. (3) Agency form number, if any, and the.... The InfoPass system allows an applicant or petitioner to schedule an interview appointment with...

  3. Small on the Left, Large on the Right: Numbers Orient Visual Attention onto Space in Preverbal Infants

    ERIC Educational Resources Information Center

    Bulf, Hermann; de Hevia, Maria Dolores; Macchi Cassia, Viola

    2016-01-01

    Numbers are represented as ordered magnitudes along a spatially oriented number line. While culture and formal education modulate the direction of this number-space mapping, it is a matter of debate whether its emergence is entirely driven by cultural experience. By registering 8-9-month-old infants' eye movements, this study shows that numerical…

  4. Effects of petroleum contamination on soil microbial numbers, metabolic activity and urease activity.

    PubMed

    Guo, Huan; Yao, Jun; Cai, Minmin; Qian, Yiguang; Guo, Yue; Richnow, Hans H; Blake, Ruth E; Doni, Serena; Ceccanti, Brunello

    2012-06-01

    The influence of petroleum contamination on soil microbial activities was investigated in 13 soil samples from sites around an injection water well (Iw-1, 2, 3, 4) (total petroleum hydrocarbons (TPH): 7.5-78 mg kg(-1)), an oil production well (Op-1, 2, 3, 4, 5) (TPH: 149-1110 mg kg(-1)), and an oil spill accident well (Os-1, 2, 3, 4) (TPH: 4500-34600 mg kg(-1)). The growth rate constant (μ) of glucose stimulated organisms, determined by microcalorimetry, was higher in Iw soil samples than in Op and Os samples. Total cultivable bacteria and fungi and urease activity also decreased with increasing concentration of TPH. Total heat produced demonstrated that TPH at concentrations less than about 1 g kg(-1) soil stimulated anaerobic respiration. A positive correlation between TPH and soil organic matter (OM) and stimulation of fungi-bacteria-urease at low TPH doses suggested that TPH is bound to soil OM and slowly metabolized in Iw soils during OM consumption. These methods can be used to evaluate the potential of polluted soils to carry out self-bioremediation by metabolizing TPH.

  5. Small on the left, large on the right: numbers orient visual attention onto space in preverbal infants.

    PubMed

    Bulf, Hermann; de Hevia, Maria Dolores; Macchi Cassia, Viola

    2016-05-01

    Numbers are represented as ordered magnitudes along a spatially oriented number line. While culture and formal education modulate the direction of this number-space mapping, it is a matter of debate whether its emergence is entirely driven by cultural experience. By registering 8-9-month-old infants' eye movements, this study shows that numerical cues are critical in orienting infants' visual attention towards a peripheral region of space that is congruent with the number's relative position on a left-to-right oriented representational continuum. This finding provides the first direct evidence that, in humans, the association between numbers and oriented spatial codes occurs before the acquisition of symbols or exposure to formal education, suggesting that the number line is not merely a product of human invention.

  6. Intervention for First Graders with Limited Number Knowledge: Large-Scale Replication of a Randomized Controlled Trial

    ERIC Educational Resources Information Center

    Gersten, Russell; Rolfhus, Eric; Clarke, Ben; Decker, Lauren E.; Wilkins, Chuck; Dimino, Joseph

    2015-01-01

    Replication studies are extremely rare in education. This randomized controlled trial (RCT) is a scale-up replication of Fuchs et al., which in a sample of 139 found a statistically significant positive impact for Number Rockets, a small-group intervention for at-risk first graders that focused on building understanding of number operations. The…

  7. Large Strain Transparent Magneto-Active Polymer Nanocomposites

    NASA Technical Reports Server (NTRS)

    Yoonessi, Mitra (Inventor); Meador, Michael A (Inventor)

    2016-01-01

    A large strain polymer nanocomposite actuator is provided that upon subjected to an external stimulus, such as a magnetic field (static or electromagnetic field), an electric field, thermal energy, light, etc., will deform to thereby enable mechanical manipulations of structural components in a remote and wireless manner.

  8. Analysis of Fluctuating Static Pressure Measurements in a Large High Reynolds Number Transonic Cryogenic Wind Tunnel. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Igoe, William B.

    1991-01-01

    Dynamic measurements of fluctuating static pressure levels were made using flush mounted high frequency response pressure transducers at eleven locations in the circuit of the National Transonic Facility (NTF) over the complete operating range of this wind tunnel. Measurements were made at test section Mach numbers from 0.2 to 1.2, at pressure from 1 to 8.6 atmospheres and at temperatures from ambient to -250 F, resulting in dynamic flow disturbance measurements at the highest Reynolds numbers available in a transonic ground test facility. Tests were also made independently at variable Mach number, variable Reynolds number, and variable drivepower, each time keeping the other two variables constant thus allowing for the first time, a distinct separation of these three important variables. A description of the NTF emphasizing its flow quality features, details on the calibration of the instrumentation, results of measurements with the test section slots covered, downstream choke, effects of liquid nitrogen injection and gaseous nitrogen venting, comparisons between air and nitrogen, isolation of the effects of Mach number, Reynolds number, and fan drive power, and identification of the sources of significant flow disturbances is included. The results indicate that primary sources of flow disturbance in the NTF may be edge-tones generated by test section sidewall re-entry flaps and the venting of nitrogen gas from the return leg of the tunnel circuit between turns 3 and 4 in the cryogenic mode of operation. The tests to isolate the effects of Mach number, Reynolds number, and drive power indicate that Mach number effects predominate. A comparison with other transonic wind tunnels shows that the NTF has low levels of test section fluctuating static pressure especially in the high subsonic Mach number range from 0.7 to 0.9.

  9. Periodogram analysis of sunspot numbers and the relation with solar activities

    NASA Technical Reports Server (NTRS)

    Hady, Ahmed A.

    1995-01-01

    The time series of average monthly sunspot numbers during 1900-1992 is studied by using power spectral analysis. This prediction method is used to study the sunspot periodicities relations between its, and with the other periodicities by solar activities. There are periodicities (between few days and 5 years) overwhelm on the mean solar cycle. ( 11 year cycle). These periodicities have the same relation with variations of solar constant and solar radiation reaching the Earth's atmosphere in the last solar cycle. These periods are related to the solar magnetic activity and to the modulation of solar features due to solar rotation.

  10. Shuttle program. Solar activity prediction of sunspot numbers, predicted solar radio flux

    NASA Technical Reports Server (NTRS)

    Johnson, G. G.; Newman, S. R.

    1980-01-01

    A solar activity prediction technique for monthly mean sunspot numbers over a period of approximately ten years from February 1979 to January 1989 is presented. This includes the predicted maximum epoch of solar cycle 21, approximately January 1980, and the predicted minimum epoch of solar cycle 22, approximately March 1987. Additionally, the solar radio flux 10.7 centimeter smooth values are included for the same time frame using a smooth 13 month empirical relationship. The incentive for predicting solar activity values is the requirement of solar flux data as input to upper atmosphere density models utilized in mission planning satellite orbital lifetime studies.

  11. Number and locations of agonist binding sites required to activate homomeric Cys-loop receptors.

    PubMed

    Rayes, Diego; De Rosa, María José; Sine, Steven M; Bouzat, Cecilia

    2009-05-06

    Homo-pentameric Cys-loop receptors contain five identical agonist binding sites, each formed at a subunit interface. To determine the number and locations of binding sites required to generate a stable active state, we constructed a receptor subunit with a mutation that disables the agonist binding site and a reporter mutation that alters unitary conductance and coexpressed mutant and nonmutant subunits. Although receptors with a range of different subunit compositions are produced, patch-clamp recordings reveal that the amplitude of each single-channel opening event reports the number and, for certain subunit combinations, the locations of subunits with intact binding sites. We find that receptors with three binding sites at nonconsecutive subunit interfaces exhibit maximal mean channel open time, receptors with binding sites at three consecutive or two nonconsecutive interfaces exhibit intermediate open time, and receptors with binding sites at two consecutive or one interface exhibit brief open time. Macroscopic recordings after rapid application of agonist reveal that channel activation slows and the extent of desensitization decreases as the number of binding sites per receptor decreases. The overall results provide a framework for defining mechanisms of activation and drug modulation for homo-pentameric Cys-loop receptors.

  12. I 5683 you: dialing phone numbers on cell phones activates key-concordant concepts.

    PubMed

    Topolinski, Sascha

    2011-03-01

    When people perform actions, effects associated with the actions are activated mentally, even if those effects are not apparent. This study tested whether sequences of simulations of virtual action effects can be integrated into a meaning of their own. Cell phones were used to test this hypothesis because pressing a key on a phone is habitually associated with both digits (dialing numbers) and letters (typing text messages). In Experiment 1, dialing digit sequences induced the meaning of words that share the same key sequence (e.g., 5683, LOVE). This occurred even though the letters were not labeled on the keypad, and participants were not aware of the digit-letter correspondences. In Experiment 2, subjects preferred dialing numbers implying positive words (e.g., 37326, DREAM) over dialing numbers implying negative words (e.g., 75463, SLIME). In Experiment 3, subjects preferred companies with phone numbers implying a company-related word (e.g., LOVE for a dating agency, CORPSE for a mortician) compared with companies with phone numbers implying a company-unrelated word.

  13. Biofidelic Human Activity Modeling and Simulation with Large Variability

    DTIC Science & Technology

    2014-11-25

    capture data to replicate a human activity in 3D space. Since technologies for simultaneously capturing human motion and dynamic shapes are not yet ready...for practical use, a motion capture system can be used to capture markers on the body during motion and a 3D body scanner can be used to capture the...animation-capable model that can replicate a human activity in 3D space with the true shape and true motion of a human. Using this approach, a model

  14. Active Commuting Patterns at a Large, Midwestern College Campus

    ERIC Educational Resources Information Center

    Bopp, Melissa; Kaczynski, Andrew; Wittman, Pamela

    2011-01-01

    Objective: To understand patterns and influences on active commuting (AC) behavior. Participants: Students and faculty/staff at a university campus. Methods: In April-May 2008, respondents answered an online survey about mode of travel to campus and influences on commuting decisions. Hierarchical regression analyses predicted variance in walking…

  15. Transparent Large Strain Thermoplastic Polyurethane Magneto-Active Nanocomposites

    NASA Technical Reports Server (NTRS)

    Yoonessi, Mitra; Carpen, Ileana; Peck, John; Sola, Francisco; Bail, Justin; Lerch, Bradley; Meador, Michael

    2010-01-01

    Smart adaptive materials are an important class of materials which can be used in space deployable structures, morphing wings, and structural air vehicle components where remote actuation can improve fuel efficiency. Adaptive materials can undergo deformation when exposed to external stimuli such as electric fields, thermal gradients, radiation (IR, UV, etc.), chemical and electrochemical actuation, and magnetic field. Large strain, controlled and repetitive actuation are important characteristics of smart adaptive materials. Polymer nanocomposites can be tailored as shape memory polymers and actuators. Magnetic actuation of polymer nanocomposites using a range of iron, iron cobalt, and iron manganese nanoparticles is presented. The iron-based nanoparticles were synthesized using the soft template (1) and Sun's (2) methods. The nanoparticles shape and size were examined using TEM. The crystalline structure and domain size were evaluated using WAXS. Surface modifications of the nanoparticles were performed to improve dispersion, and were characterized with IR and TGA. TPU nanocomposites exhibited actuation for approximately 2wt% nanoparticle loading in an applied magnetic field. Large deformation and fast recovery were observed. These nanocomposites represent a promising potential for new generation of smart materials.

  16. Active Flow Separation Control of a Laminar Airfoil at Low Reynolds Number

    NASA Astrophysics Data System (ADS)

    Packard, Nathan Owen

    Detailed investigation of the NACA 643-618 is obtained at a Reynolds number of 6.4x104 and angle of attack sweep of -5° < alpha < 25°. The baseline flow is characterized by four distinct regimes depending on angle of attack, each exhibiting unique flow behavior. Active flow control is exploited from a row of discrete holes located at five percent chord on the upper surface of the airfoil. Steady normal blowing is employed at four representative angles; blowing ratio is optimized by maximizing the lift coefficient with minimal power requirement. The range of effectiveness of pulsed actuation with varying frequency, duty cycle and blowing ratio is explored. Pulsed blowing successfully reduces separation over a wide range of reduced frequency (0.1-1), blowing ratio (0.5--2), and duty cycle (0.6--50%). A phase-locked investigation, by way of particle image velocimetry, at ten degrees angle of attack illuminates physical mechanisms responsible for separation control of pulsed actuation at a low frequency and duty cycle. Temporal resolution of large structure formation and wake shedding is obtained, revealing a key mechanism for separation control. The Kelvin-Helmholtz instability is identified as responsible for the formation of smaller structures in the separation region which produce favorable momentum transfer, assisting in further thinning the separation region and then fully attaching the boundary layer. Closed-loop separation control of an oscillating NACA 643-618 airfoil at Re = 6.4x104 is investigated in an effort to autonomously minimize control effort while maximizing aerodynamic performance. High response sensing of unsteady flow with on-surface hot-film sensors placed at zero, twenty, and forty percent chord monitors the airfoil performance and determines the necessity of active flow control. Open-loop characterization identified the use of the forty percent sensor as the actuation trigger. Further, the sensor at twenty percent chord is used to distinguish

  17. Large-Scale Activity Initiated BY Halo CMEs

    NASA Astrophysics Data System (ADS)

    Chertok, I.; Grechnev, V.

    We summarize results of our recent studies of CME-associated EUV dimmings and coronal waves by `derotated' fixed-difference SOHO/EIT heliograms at 195 Å with 12-min intervals and at 171, 195, 284, 304 Å with 6-h intervals. Correctness of the derotated fixed-difference technique is confirmed by the consideration of the Bastille Day 2000 event. We also demonstrate that long narrow channeled dimmings and anisotropic coronal waves are typical of the complex global solar magnetosphere near the solar cycle maximum. Homology of large-scale dimmings and coronal waves takes place in a series of recurrent eruptive events. Along with dimmings coinciding entirely or partially in all four EIT bands, there exist dimmings that appear different, mainly in the transition-region line of 304 Å and high-temperature coronal line of 284 Å.

  18. A few large roads or many small ones? How to accommodate growth in vehicle numbers to minimise impacts on wildlife.

    PubMed

    Rhodes, Jonathan R; Lunney, Daniel; Callaghan, John; McAlpine, Clive A

    2014-01-01

    Roads and vehicular traffic are among the most pervasive of threats to biodiversity because they fragmenting habitat, increasing mortality and opening up new areas for the exploitation of natural resources. However, the number of vehicles on roads is increasing rapidly and this is likely to continue into the future, putting increased pressure on wildlife populations. Consequently, a major challenge is the planning of road networks to accommodate increased numbers of vehicles, while minimising impacts on wildlife. Nonetheless, we currently have few principles for guiding decisions on road network planning to reduce impacts on wildlife in real landscapes. We addressed this issue by developing an approach for quantifying the impact on wildlife mortality of two alternative mechanisms for accommodating growth in vehicle numbers: (1) increasing the number of roads, and (2) increasing traffic volumes on existing roads. We applied this approach to a koala (Phascolarctos cinereus) population in eastern Australia and quantified the relative impact of each strategy on mortality. We show that, in most cases, accommodating growth in traffic through increases in volumes on existing roads has a lower impact than building new roads. An exception is where the existing road network has very low road density, but very high traffic volumes on each road. These findings have important implications for how we design road networks to reduce their impacts on biodiversity.

  19. A Few Large Roads or Many Small Ones? How to Accommodate Growth in Vehicle Numbers to Minimise Impacts on Wildlife

    PubMed Central

    Rhodes, Jonathan R.; Lunney, Daniel; Callaghan, John; McAlpine, Clive A.

    2014-01-01

    Roads and vehicular traffic are among the most pervasive of threats to biodiversity because they fragmenting habitat, increasing mortality and opening up new areas for the exploitation of natural resources. However, the number of vehicles on roads is increasing rapidly and this is likely to continue into the future, putting increased pressure on wildlife populations. Consequently, a major challenge is the planning of road networks to accommodate increased numbers of vehicles, while minimising impacts on wildlife. Nonetheless, we currently have few principles for guiding decisions on road network planning to reduce impacts on wildlife in real landscapes. We addressed this issue by developing an approach for quantifying the impact on wildlife mortality of two alternative mechanisms for accommodating growth in vehicle numbers: (1) increasing the number of roads, and (2) increasing traffic volumes on existing roads. We applied this approach to a koala (Phascolarctos cinereus) population in eastern Australia and quantified the relative impact of each strategy on mortality. We show that, in most cases, accommodating growth in traffic through increases in volumes on existing roads has a lower impact than building new roads. An exception is where the existing road network has very low road density, but very high traffic volumes on each road. These findings have important implications for how we design road networks to reduce their impacts on biodiversity. PMID:24646891

  20. Large Scale Population Assessment of Physical Activity Using Wrist Worn Accelerometers: The UK Biobank Study

    PubMed Central

    Jackson, Dan; Hammerla, Nils; Granat, Malcolm H.; van Hees, Vincent T.; Trenell, Michael I.; Owen, Christoper G.; Preece, Stephen J.; Peakman, Tim; Brage, Soren

    2017-01-01

    Background Physical activity has not been objectively measured in prospective cohorts with sufficiently large numbers to reliably detect associations with multiple health outcomes. Technological advances now make this possible. We describe the methods used to collect and analyse accelerometer measured physical activity in over 100,000 participants of the UK Biobank study, and report variation by age, sex, day, time of day, and season. Methods Participants were approached by email to wear a wrist-worn accelerometer for seven days that was posted to them. Physical activity information was extracted from 100Hz raw triaxial acceleration data after calibration, removal of gravity and sensor noise, and identification of wear / non-wear episodes. We report age- and sex-specific wear-time compliance and accelerometer measured physical activity, overall and by hour-of-day, week-weekend day and season. Results 103,712 datasets were received (44.8% response), with a median wear-time of 6.9 days (IQR:6.5–7.0). 96,600 participants (93.3%) provided valid data for physical activity analyses. Vector magnitude, a proxy for overall physical activity, was 7.5% (2.35mg) lower per decade of age (Cohen’s d = 0.9). Women had a higher vector magnitude than men, apart from those aged 45-54yrs. There were major differences in vector magnitude by time of day (d = 0.66). Vector magnitude differences between week and weekend days (d = 0.12 for men, d = 0.09 for women) and between seasons (d = 0.27 for men, d = 0.15 for women) were small. Conclusions It is feasible to collect and analyse objective physical activity data in large studies. The summary measure of overall physical activity is lower in older participants and age-related differences in activity are most prominent in the afternoon and evening. This work lays the foundation for studies of physical activity and its health consequences. Our summary variables are part of the UK Biobank dataset and can be used by researchers as

  1. GMP Cryopreservation of Large Volumes of Cells for Regenerative Medicine: Active Control of the Freezing Process

    PubMed Central

    Massie, Isobel; Selden, Clare; Hodgson, Humphrey; Gibbons, Stephanie; Morris, G. John

    2014-01-01

    Cryopreservation protocols are increasingly required in regenerative medicine applications but must deliver functional products at clinical scale and comply with Good Manufacturing Process (GMP). While GMP cryopreservation is achievable on a small scale using a Stirling cryocooler-based controlled rate freezer (CRF) (EF600), successful large-scale GMP cryopreservation is more challenging due to heat transfer issues and control of ice nucleation, both complex events that impact success. We have developed a large-scale cryocooler-based CRF (VIA Freeze) that can process larger volumes and have evaluated it using alginate-encapsulated liver cell (HepG2) spheroids (ELS). It is anticipated that ELS will comprise the cellular component of a bioartificial liver and will be required in volumes of ∼2 L for clinical use. Sample temperatures and Stirling cryocooler power consumption was recorded throughout cooling runs for both small (500 μL) and large (200 mL) volume samples. ELS recoveries were assessed using viability (FDA/PI staining with image analysis), cell number (nuclei count), and function (protein secretion), along with cryoscanning electron microscopy and freeze substitution techniques to identify possible injury mechanisms. Slow cooling profiles were successfully applied to samples in both the EF600 and the VIA Freeze, and a number of cooling and warming profiles were evaluated. An optimized cooling protocol with a nonlinear cooling profile from ice nucleation to −60°C was implemented in both the EF600 and VIA Freeze. In the VIA Freeze the nucleation of ice is detected by the control software, allowing both noninvasive detection of the nucleation event for quality control purposes and the potential to modify the cooling profile following ice nucleation in an active manner. When processing 200 mL of ELS in the VIA Freeze—viabilities at 93.4%±7.4%, viable cell numbers at 14.3±1.7 million nuclei/mL alginate, and protein secretion at 10.5±1.7

  2. Community-Organizing Agent: An Artificial Intelligent System for Building Learning Communities among Large Numbers of Learners

    ERIC Educational Resources Information Center

    Yang, Fan; Wang, Minjuan; Shen, Ruimin; Han, Peng

    2007-01-01

    Web-based (or online) learning provides an unprecedented flexibility and convenience to both learners and instructors. However, large online classes relying on instructor-centered presentations could tend to isolate many learners. The size of these classes and the wide dispersion of the learners make it challenging for instructors to interact with…

  3. Does Decision Quality (Always) Increase with the Size of Information Samples? Some Vicissitudes in Applying the Law of Large Numbers

    ERIC Educational Resources Information Center

    Fiedler, Klaus; Kareev, Yaakov

    2006-01-01

    Adaptive decision making requires that contingencies between decision options and their relative assets be assessed accurately and quickly. The present research addresses the challenging notion that contingencies may be more visible from small than from large samples of observations. An algorithmic account for such a seemingly paradoxical effect…

  4. When and how to activate large new hydropower reservoirs

    NASA Astrophysics Data System (ADS)

    Geressu, Robel; Harou, Julien

    2016-04-01

    Water resources system planners are increasingly required to address multiple long and short-term management objectives and the trade-offs these imply. Expansion planning in hydropower reservoir systems, where assets either temporarily or permanently reduce each other's performance, is a complex and potentially conflictual task requiring attention to multiple impacts. This paper proposes a multi-criteria scheduling approach considering many objectives and their associated uncertainties. The method considers the coordination and flexibility of reservoir operation in different expansion stages. The impact of abstraction (i.e., during filling of new reservoirs) and regulation of inflows by upstream reservoirs, is represented by simultaneously optimizing the storage size of reservoirs. Sensitivity analysis of performance given financial uncertainty and hydrological variability reveals which expansion schedules are robust to a wide range of future conditions. This informs how alternative designs compare in multiple performance dimensions and can serve stakeholders with differing attitudes towards risk and opportunity. The method is applied to proposed Blue Nile hydropower reservoirs to find efficient new dam activation schedules considering energy revenues, downstream release requirements, and energy generation during reservoir filling periods. Results take the form of Pareto-optimal trade-offs where each point on the curve or surface represents asset choices, size, activation date, and filling period reservoir operating rules. The results help explore the complex planning and management issues involved in the Blue Nile and demonstrate a possible approach to negotiate the design, filling and coordinated use of hydropower reservoirs.

  5. Peptide microarrays for the profiling of cytotoxic T-lymphocyte activity using minimum numbers of cells.

    PubMed

    Hoff, Antje; Bagû, Ana-Cristina; André, Thomas; Roth, Günter; Wiesmüller, Karl-Heinz; Gückel, Brigitte; Brock, Roland

    2010-09-01

    The identification of epitopes that elicit cytotoxic T-lymphocyte activity is a prerequisite for the development of cancer-specific immunotherapies. However, especially the parallel characterization of several epitopes is limited by the availability of T cells. Microarrays have enabled an unprecedented miniaturization and parallelization in biological assays. Here, we developed peptide microarrays for the detection of CTL activity. MHC class I-binding peptide epitopes were pipetted onto polymer-coated glass slides. Target cells, loaded with the cell-impermeant dye calcein, were incubated on these arrays, followed by incubation with antigen-expanded CTLs. Cytotoxic activity was detected by release of calcein and detachment of target cells. With only 200,000 cells per microarray, CTLs could be detected at a frequency of 0.5% corresponding to 1,000 antigen-specific T cells. Target cells and CTLs only settled on peptide spots enabling a clear separation of individual epitopes. Even though no physical boundaries were present between the individual spots, peptide loading only occurred locally and cytolytic activity was confined to the spots carrying the specific epitope. The peptide microarrays provide a robust platform that implements the whole process from antigen presentation to the detection of CTL activity in a miniaturized format. The method surpasses all established methods in the minimum numbers of cells required. With antigen uptake occurring on the microarray, further applications are foreseen in the testing of antigen precursors that require uptake and processing prior to presentation.

  6. LARGE PARTICLES IN ACTIVE ASTEROID P/2010 A2

    SciTech Connect

    Jewitt, David; Ishiguro, Masateru; Agarwal, Jessica

    2013-02-10

    The previously unknown asteroid P/2010 A2 rose to prominence in 2010 by forming a transient, comet-like tail consisting of ejected dust. The observed dust production was interpreted as the result of either a hypervelocity impact with a smaller body or a rotational disruption. We have re-observed this object, finding that large particles remain a full orbital period after the initial outburst. In the intervening years, particles smaller than {approx}3 mm in radius have been dispersed by radiation pressure, leaving only larger particles in the trail. Since the total mass is dominated by the largest particles, the radiation pressure filtering allows us to obtain a more reliable estimate of the debris mass than was previously possible. We find that the mass contained in the debris is {approx}5 Multiplication-Sign 10{sup 8} kg (assumed density 3000 kg m{sup -3}), the ratio of the total debris mass to the nucleus mass is {approx}0.1, and that events like P/2010 A2 contribute <3% to the Zodiacal dust production rate. Physical properties of the nucleus and debris are also determined.

  7. Multidisciplinary analysis of actively controlled large flexible spacecraft

    NASA Technical Reports Server (NTRS)

    Cooper, Paul A.; Young, John W.; Sutter, Thomas R.

    1986-01-01

    The control of Flexible Structures (COFS) program has supported the development of an analysis capability at the Langley Research Center called the Integrated Multidisciplinary Analysis Tool (IMAT) which provides an efficient data storage and transfer capability among commercial computer codes to aid in the dynamic analysis of actively controlled structures. IMAT is a system of computer programs which transfers Computer-Aided-Design (CAD) configurations, structural finite element models, material property and stress information, structural and rigid-body dynamic model information, and linear system matrices for control law formulation among various commercial applications programs through a common database. Although general in its formulation, IMAT was developed specifically to aid in the evaluation of the structures. A description of the IMAT system and results of an application of the system are given.

  8. Active assembly for large-scale manufacturing of integrated nanostructures.

    SciTech Connect

    Spoerke, Erik David; Bunker, Bruce Conrad; Orendorff, Christopher J.; Bachand, George David; Hendricks, Judy K.; Matzke, Carolyn M.

    2007-01-01

    Microtubules and motor proteins are protein-based biological agents that work cooperatively to facilitate the organization and transport of nanomaterials within living organisms. This report describes the application of these biological agents as tools in a novel, interdisciplinary scheme for assembling integrated nanostructures. Specifically, selective chemistries were used to direct the favorable adsorption of active motor proteins onto lithographically-defined gold electrodes. Taking advantage of the specific affinity these motor proteins have for microtubules, the motor proteins were used to capture polymerized microtubules out of suspension to form dense patterns of microtubules and microtubule bridges between gold electrodes. These microtubules were then used as biofunctionalized templates to direct the organization of functionalized nanocargo including single-walled carbon nanotubes and gold nanoparticles. This biologically-mediated scheme for nanomaterials assembly has shown excellent promise as a foundation for developing new biohybrid approaches to nanoscale manufacturing.

  9. Wall-modeled large eddy simulation of turbulent channel flow at high Reynolds number using the von Karman length scale

    NASA Astrophysics Data System (ADS)

    Xu, Jinglei; Li, Meng; Zhang, Yang; Chen, Longfei

    2016-12-01

    The von Karman length scale is able to reflect the size of the local turbulence structure. However, it is not suitable for the near wall region of wall-bounded flows, for its value is almost infinite there. In the present study, a simple and novel length scale combining the wall distance and the von Karman length scale is proposed by introducing a structural function. The new length scale becomes the von Karman length scale once local unsteady structures are detected. The proposed method is adopted in a series of turbulent channel flows at different Reynolds numbers. The results show that the proposed length scale with the structural function can precisely simulate turbulence at high Reynolds numbers, even with a coarse grid resolution.

  10. High-speed horizontal-path atmospheric turbulence correction using a large actuator-number MEMS spatial light modulator in an interferometric phase conjugation engine

    SciTech Connect

    Baker, K; Stappaerts, E; Gavel, D; Wilks, S; Tucker, J; Silva, D; Olsen, J; Olivier, S; Young, P; Kartz, M; Flath, L; Kruelivitch, P; Crawford, J; Azucena, O

    2004-03-04

    Atmospheric propagation results for a high-speed, large-actuator-number, adaptive optics system are presented. The system uses a MEMS-based spatial light modulator correction device with 1024 actuators. Tests over a 1.35 km path achieved correction speeds in excess of 800 Hz and Strehl ratios close to 0.5. The wave-front sensor was based on a quadrature interferometer that directly measures phase. This technique does not require global wave-front reconstruction, making it relatively insensitive to scintillation and phase residues. The results demonstrate the potential of large actuator number MEMS-based spatial light modulators to replace conventional deformable mirrors.

  11. Measurements in large pool fires with an actively cooled calorimeter

    SciTech Connect

    Koski, J.A.; Wix, S.D.

    1995-12-31

    The pool fire thermal test described in Safety Series 6 published by the International Atomic Energy Agency (IAEA) or Title 10, Code of Federal Regulations, Part 71 (10CFR71) in the United States is one of the most difficult tests that a container for larger ``Type B`` quantities of nuclear materials must pass. If retests of a container are required, costly redesign and project delays can result. Accurate measurements and modeling of the pool fire environment will ultimately lower container costs by assuring that containers past the pool fire test on the first attempt. Experiments indicate that the object size or surface temperature of the container can play a role in determining local heat fluxes that are beyond the effects predicted from the simple radiative heat transfer laws. An analytical model described by Nicolette and Larson 1990 can be used to understand many of these effects. In this model a gray gas represents soot particles present in the flame structure. Close to the container surface, these soot particles are convectively and radiatively cooled and interact with incident energy from the surrounding fire. This cooler soot cloud effectively prevents some thermal radiation from reaching the container surface, reducing the surface heat flux below the value predicted by a transparent medium model. With some empirical constants, the model suggested by Nicolette and Larson can be used to more accurately simulate the pool fire environment. Properly formulated, the gray gas approaches also fast enough to be used with standard commercial computer codes to analyze shipping containers. To calibrate this type of model, accurate experimental measurements of radiative absorption coefficients, flame temperatures, and other parameters are necessary. A goal of the calorimeter measurements described here is to obtain such parameters so that a fast, useful design tool for large pool fires can be constructed.

  12. Large-scale pattern formation in active particles suspensions: from interacting microtubules to swimming bacteria

    NASA Astrophysics Data System (ADS)

    Aranson, Igor

    2006-03-01

    We consider two biological systems of active particles exhibiting large-scale collective behavior: microtubules interacting with molecular motors and hydrodynamically entrained swimming bacteria. Starting from a generic stochastic microscopic model of inelastically colliding polar rods with an anisotropic interaction kernel, we derive set of equations for the local rods concentration and orientation. Above certain critical density of rods the model exhibits orientational instability and onset of large-scale coherence. For the microtubules and molecular motors system we demonstrate that the orientational instability leads to the formation of vortices and asters seen in recent experiments. Similar approach is applied to colonies of swimming bacteria Bacillus subtilis confined in thin fluid film. The model is formulated in term of two-dimensional equations for local density and orientation of bacteria coupled to the low Reynolds number Navier-Stokes equation for the fluid flow velocity. The collective swimming of bacteria is represented by additional source term in the Navier-Stokes equation. We demonstrate that this system exhibits formation of dynamic large-scale patterns with the typical scale determined by the density of bacteria.

  13. Large-activation-energy analysis of gaseous reactive flow in pipes

    NASA Astrophysics Data System (ADS)

    Moreno-Boza, Daniel; Iglesias, Immaculada; Sanchez, Antonio L.

    2016-11-01

    Frank-Kamenetskii's analysis of thermal explosions is applied, using also a single-reaction model with an Arrhenius rate having a large activation energy, to describe the evolution of an initially cold gaseous mixture flowing along a circular pipe with constant wall temperature for moderately large values of the relevant Reynolds number. The analysis shows two modes of combustion. There is a flameless slowly reacting mode for low wall temperatures or small pipe radii, when the temperature rise resulting from the heat released by the reaction is kept small by the heat-conduction losses to the wall, so as not to change significantly the order of magnitude of the reaction rate. In the other mode, the slow reaction rates occur only in an initial ignition stage, which ends abruptly when very large reaction rates cause a temperature runaway, or thermal explosion, at a well-defined ignition distance. The analysis determines the slow streamwise evolution for the flameless mode of combustion as well as the ignition distance for the explosive mode.

  14. Large-deflection statics analysis of active cardiac catheters through co-rotational modelling.

    PubMed

    Peng Qi; Chen Qiu; Mehndiratta, Aadarsh; I-Ming Chen; Haoyong Yu

    2016-08-01

    This paper presents a co-rotational concept for large-deflection formulation of cardiac catheters. Using this approach, the catheter is first discretized with a number of equal length beam elements and nodes, and the rigid body motions of an individual beam element are separated from its deformations. Therefore, it is adequate for modelling arbitrarily large deflections of a catheter with linear elastic analysis at the local element level. A novel design of active cardiac catheter of 9 Fr in diameter at the beginning of the paper is proposed, which is based on the contra-rotating double helix patterns and is improved from the previous prototypes. The modelling section is followed by MATLAB simulations of various deflections when the catheter is exerted different types of loads. This proves the feasibility of the presented modelling approach. To the best knowledge of the authors, it is the first to utilize this methodology for large-deflection static analysis of the catheter, which will enable more accurate control of robot-assisted cardiac catheterization procedures. Future work would include further experimental validations.

  15. Recombination Can Initiate and Terminate at a Large Number of Sites within the Rosy Locus of Drosophila Melanogaster

    PubMed Central

    Clark, S. H.; Hilliker, A. J.; Chovnick, A.

    1988-01-01

    This report presents the results of a recombination experiment designed to question the existence of special sites for the initiation or termination of a recombination heteroduplex within the region of the rosy locus. Intragenic recombination events were monitored between two physically separated rosy mutant alleles ry(301) and ry(2) utilizing DNA restriction site polymorphisms as genetic markers. Both ry(301) and ry(2) are known from previous studies to be associated with gene conversion frequencies an order of magnitude lower than single site mutations. The mutations are associated with large, well defined insertions located as internal sites within the locus in prior intragenic mapping studies. On the molecular map, they represent large insertions approximately 2.7 kb apart in the second and third exons, respectively, of the XDH coding region. The present study monitors intragenic recombination in a mutant heterozygous genotype in which DNA homology is disrupted by these large discontinuities, greater than the region of DNA homology and flanking both sides of the locus. If initiation/or termination requires separate sites at either end of the locus, then intragenic recombination within the rosy locus of the heterozygote should be eliminated. Contrary to expectation, significant recombination between these sites is seen. PMID:2834266

  16. QUIESCENT GALAXIES IN THE 3D-HST SURVEY: SPECTROSCOPIC CONFIRMATION OF A LARGE NUMBER OF GALAXIES WITH RELATIVELY OLD STELLAR POPULATIONS AT z {approx} 2

    SciTech Connect

    Whitaker, Katherine E.; Van Dokkum, Pieter G.; Momcheva, Ivelina G.; Skelton, Rosalind; Nelson, Erica J.; Brammer, Gabriel; Franx, Marijn; Labbe, Ivo; Fumagalli, Mattia; Patel, Shannon G.; Kriek, Mariska; Lundgren, Britt F.; Rix, Hans-Walter

    2013-06-20

    Quiescent galaxies at z {approx} 2 have been identified in large numbers based on rest-frame colors, but only a small number of these galaxies have been spectroscopically confirmed to show that their rest-frame optical spectra show either strong Balmer or metal absorption lines. Here, we median stack the rest-frame optical spectra for 171 photometrically quiescent galaxies at 1.4 < z < 2.2 from the 3D-HST grism survey. In addition to H{beta} ({lambda}4861 A), we unambiguously identify metal absorption lines in the stacked spectrum, including the G band ({lambda}4304 A), Mg I ({lambda}5175 A), and Na I ({lambda}5894 A). This finding demonstrates that galaxies with relatively old stellar populations already existed when the universe was {approx}3 Gyr old, and that rest-frame color selection techniques can efficiently select them. We find an average age of 1.3{sup +0.1}{sub -0.3} Gyr when fitting a simple stellar population to the entire stack. We confirm our previous result from medium-band photometry that the stellar age varies with the colors of quiescent galaxies: the reddest 80% of galaxies are dominated by metal lines and have a relatively old mean age of 1.6{sup +0.5}{sub -0.4} Gyr, whereas the bluest (and brightest) galaxies have strong Balmer lines and a spectroscopic age of 0.9{sup +0.2}{sub -0.1} Gyr. Although the spectrum is dominated by an evolved stellar population, we also find [O III] and H{beta} emission. Interestingly, this emission is more centrally concentrated than the continuum with L{sub OIII}=1.7{+-}0.3 Multiplication-Sign 10{sup 40} erg s{sup -1}, indicating residual central star formation or nuclear activity.

  17. Quiescent Galaxies in the 3D-HST Survey: Spectroscopic Confirmation of a Large Number of Galaxies with Relatively Old Stellar Populations at Z approx. 2

    NASA Technical Reports Server (NTRS)

    Tease, Katherine Whitaker; VanDokkum, Pieter G.; Brammer, Gabriel; Momcheva, Ivelina G.; Skelton, Rosalind; Franx, Marijn; Kriek, Mariska; Labbe, Ivo; Fumagalli, Mattia; Lundgren, Britt F.; Nelson, Erica J.; Patel, Shannon G.; Rix, Hans-Walter

    2013-01-01

    Quiescent galaxies at zeta approximately 2 have been identified in large numbers based on rest-frame colors, but only a small number of these galaxies have been spectroscopically confirmed to show that their rest-frame optical spectra show either strong Balmer or metal absorption lines. Here, we median stack the rest-frame optical spectra for 171 photometrically quiescent galaxies at 1.4 less than z less than 2.2 from the 3D-HST grism survey. In addition to H(Beta) (lambda 4861 Angstroms), we unambiguously identify metal absorption lines in the stacked spectrum, including the G band (lambda 4304 Angstroms), Mg I (lambda 5175 Angstroms), and Na i (lambda 5894 Angstroms). This finding demonstrates that galaxies with relatively old stellar populations already existed when the universe was approximately 3 Gyr old, and that rest-frame color selection techniques can efficiently select them. We find an average age of 1.3(+0.1/-0.3) Gyr when fitting a simple stellar population to the entire stack. We confirm our previous result from medium-band photometry that the stellar age varies with the colors of quiescent galaxies: the reddest 80% of galaxies are dominated by metal lines and have a relatively old mean age of 1.6(+0.5/-0.4) Gyr, whereas the bluest (and brightest) galaxies have strong Balmer lines and a spectroscopic age of 0.9(+0.2/-0.1) Gyr. Although the spectrum is dominated by an evolved stellar population, we also find [O III] and Hß emission. Interestingly, this emission is more centrally concentrated than the continuum with L(sub OIII) = 1.7 +/- 0.3 × 10(exp 40 erg s-1, indicating residual central star formation or nuclear activity.

  18. Quiescent Galaxies in the 3D-HST Survey: Spectroscopic Confirmation of a Large Number of Galaxies With Relatively Old Stellar Populations at z Approx. 2

    NASA Technical Reports Server (NTRS)

    Tease, Katherine Whitaker; vanDokkum, Pieter G.; Brammer, Gabriel; Momcheva, Ivelina; Skelton, Rosalind; Franx, Marijin; Kriek, Mariska; Labbe, Ivo; Fumagalli, Mattia; Lundgren, Britt F.; Nelson, Erica J.; Patel, Shannon G.; Rix, Hans-Walter

    2013-01-01

    Quiescent galaxies at z approx. 2 have been identified in large numbers based on rest-frame colors, but only a small number of these galaxies have been spectroscopically confirmed to show that their rest-frame optical spectra show either strong Balmer or metal absorption lines. Here, we median stack the rest-frame optical spectra for 171 photometrically quiescent galaxies at 1.4 < z < 2.2 from the 3D-HST grism survey. In addition to H (4861 ),we unambiguously identify metal absorption lines in the stacked spectrum, including the G band (4304 ),Mgi (5175 ), and Na i (5894 ). This finding demonstrates that galaxies with relatively old stellar populations already existed when the universe was approx. 3 Gyr old, and that rest-frame color selection techniques can efficiently select them. We find an average age of 1.3+0.10.3 Gyr when fitting a simple stellar population to the entire stack. We confirm our previous result from medium-band photometry that the stellar age varies with the colors of quiescent galaxies: the reddest 80 of galaxies are dominated by metal lines and have a relatively old mean age of 1.6+0.50.4 Gyr, whereas the bluest (and brightest) galaxies have strong Balmer lines and a spectroscopic age of 0.9+0.20.1 Gyr. Although the spectrum is dominated by an evolved stellar population, we also find [O iii] and H emission. Interestingly, this emission is more centrally concentrated than the continuum with LOiii = 1.7+/- 0.3 x 10(exp 40) erg/s, indicating residual central star formation or nuclear activity.

  19. Effective coordination number: A simple indicator of activation energies for NO dissociation on Rh(100) surfaces

    SciTech Connect

    Ghosh, Prasenjit; Pushpa, Raghani; Gironcoli, Stefano de

    2009-12-15

    We have used density-functional theory to compute the activation energy for the dissociation of NO on two physical and two hypothetical systems: unstrained and strained Rh(100) surfaces and monolayers of Rh atoms on strained and unstrained MgO(100) surfaces. We find that the activation energy, relative to the gas phase, is reduced when a monolayer of Rh is placed on MgO, due both to the chemical nature of the substrate and the strain imposed by the substrate. The former effect is the dominant one, though both effects are of the same order of magnitude. We find that both effects are encapsulated in a simple quantity which we term as the 'effective coordination number'(n{sub e}); the activation energy is found to vary linearly with n{sub e}. We have compared the performance of n{sub e} as a predictor of activation energy of NO dissociation on the above-mentioned Rh surfaces with the two well-established indicators, namely, the position of the d-band center and the coadsorption energy of N and O. We find that for the present systems n{sub e} performs as well as the other two indicators.

  20. Methyl jasmonate affects morphology, number and activity of endoplasmic reticulum bodies in Raphanus sativus root cells.

    PubMed

    Gotté, Maxime; Ghosh, Rajgourab; Bernard, Sophie; Nguema-Ona, Eric; Vicré-Gibouin, Maïté; Hara-Nishimura, Ikuko; Driouich, Azeddine

    2015-01-01

    The endoplasmic reticulum (ER) bodies are ER-derived structures that are found in Brassicaceae species and thought to play a role in defense. Here, we have investigated the occurrence, distribution and function of ER bodies in root cells of Raphanus sativus using a combination of microscopic and biochemical methods. We have also assessed the response of ER bodies to methyl jasmonate (MeJA), a phytohormone that mediates plant defense against wounding and pathogens. Our results show that (i) ER bodies do occur in different root cell types from the root cap region to the differentiation zone; (ii) they do accumulate a PYK10-like protein similar to the major marker protein of ER bodies that is involved in defense in Arabidopsis thaliana; and (iii) treatment of root cells with MeJA causes a significant increase in the number of ER bodies and the activity of β-glucosidases. More importantly, MeJA was found to induce the formation of very long ER bodies that results from the fusion of small ones, a phenomenon that has not been reported in any other study so far. These findings demonstrate that MeJA impacts the number and morphology of functional ER bodies and stimulates ER body enzyme activities, probably to participate in defense responses of radish root. They also suggest that these structures may provide a defensive system specific to root cells.

  1. Coherence of interacting bosons in optical lattices in synthetic magnetic fields with a large number of subbands

    NASA Astrophysics Data System (ADS)

    Grygiel, B.; Patucha, K.; Zaleski, T. A.

    2016-05-01

    We study the behavior of interacting ultracold bosons in optical lattices in synthetic magnetic fields with wide range of in-cell fluxes α =p /q . The problem is similar to the one of an electron moving in a tight-binding scheme in the magnetic field and becomes difficult to tackle for a growing number of magnetic subbands, q . To overcome this, we focus on the interplay of the width, shape, and number of the subbands on the formation of the coherent state of cold bosons. Using the quantum rotor approach, which goes beyond the mean-field approximation, we are able to pinpoint the elements of the band structure, which are the most significant in a proper theoretical description of the synthetic magnetic field in a bosonic lattice system. As a result, we propose a method of reconstruction of the Hofstadter butterfly spectrum by replacing the magnetic subbands with renormalized bands of a square lattice. This allows us to effectively investigate the properties of the studied system for a wide range of magnetic fluxes and their impact on the Mott-insulator-superfluid transition.

  2. Robust fast direct integral equation solver for quasi-periodic scattering problems with a large number of layers.

    PubMed

    Cho, Min Hyung; Barnett, Alex H

    2015-01-26

    We present a new boundary integral formulation for time-harmonic wave diffraction from two-dimensional structures with many layers of arbitrary periodic shape, such as multilayer dielectric gratings in TM polarization. Our scheme is robust at all scattering parameters, unlike the conventional quasi-periodic Green's function method which fails whenever any of the layers approaches a Wood anomaly. We achieve this by a decomposition into near- and far-field contributions. The former uses the free-space Green's function in a second-kind integral equation on one period of the material interfaces and their immediate left and right neighbors; the latter uses proxy point sources and small least-squares solves (Schur complements) to represent the remaining contribution from distant copies. By using high-order discretization on interfaces (including those with corners), the number of unknowns per layer is kept small. We achieve overall linear complexity in the number of layers, by direct solution of the resulting block tridiagonal system. For device characterization we present an efficient method to sweep over multiple incident angles, and show a 25× speedup over solving each angle independently. We solve the scattering from a 1000-layer structure with 3 × 105 unknowns to 9-digit accuracy in 2.5 minutes on a desktop workstation.

  3. Estimating Latent Variable Interactions with the Unconstrained Approach: A Comparison of Methods to Form Product Indicators for Large, Unequal Numbers of Items

    ERIC Educational Resources Information Center

    Jackman, M. Grace-Anne; Leite, Walter L.; Cochrane, David J.

    2011-01-01

    This Monte Carlo simulation study investigated methods of forming product indicators for the unconstrained approach for latent variable interaction estimation when the exogenous factors are measured by large and unequal numbers of indicators. Product indicators were created based on multiplying parcels of the larger scale by indicators of the…

  4. How to implement a quantum algorithm on a large number of qubits by controlling one central qubit

    NASA Astrophysics Data System (ADS)

    Zagoskin, Alexander; Ashhab, Sahel; Johansson, J. R.; Nori, Franco

    2010-03-01

    It is desirable to minimize the number of control parameters needed to perform a quantum algorithm. We show that, under certain conditions, an entire quantum algorithm can be efficiently implemented by controlling a single central qubit in a quantum computer. We also show that the different system parameters do not need to be designed accurately during fabrication. They can be determined through the response of the central qubit to external driving. Our proposal is well suited for hybrid architectures that combine microscopic and macroscopic qubits. More details can be found in: A.M. Zagoskin, S. Ashhab, J.R. Johansson, F. Nori, Quantum two-level systems in Josephson junctions as naturally formed qubits, Phys. Rev. Lett. 97, 077001 (2006); and S. Ashhab, J.R. Johansson, F. Nori, Rabi oscillations in a qubit coupled to a quantum two-level system, New J. Phys. 8, 103 (2006).

  5. A dynamic response model for pressure sensors in continuum and high Knudsen number flows with large temperature gradients

    NASA Technical Reports Server (NTRS)

    Whitmore, Stephen A.; Petersen, Brian J.; Scott, David D.

    1996-01-01

    This paper develops a dynamic model for pressure sensors in continuum and rarefied flows with longitudinal temperature gradients. The model was developed from the unsteady Navier-Stokes momentum, energy, and continuity equations and was linearized using small perturbations. The energy equation was decoupled from momentum and continuity assuming a polytropic flow process. Rarefied flow conditions were accounted for using a slip flow boundary condition at the tubing wall. The equations were radially averaged and solved assuming gas properties remain constant along a small tubing element. This fundamental solution was used as a building block for arbitrary geometries where fluid properties may also vary longitudinally in the tube. The problem was solved recursively starting at the transducer and working upstream in the tube. Dynamic frequency response tests were performed for continuum flow conditions in the presence of temperature gradients. These tests validated the recursive formulation of the model. Model steady-state behavior was analyzed using the final value theorem. Tests were performed for rarefied flow conditions and compared to the model steady-state response to evaluate the regime of applicability. Model comparisons were excellent for Knudsen numbers up to 0.6. Beyond this point, molecular affects caused model analyses to become inaccurate.

  6. The application of large numbers of pleasure boats to collect synoptic sea-truth for ERTS-1 overpasses

    NASA Technical Reports Server (NTRS)

    Klemas, V. (Principal Investigator); Davis, G.; Philpot, W.

    1974-01-01

    The author has identified the following significant results. In order to interpret and annotate current circulation and suspended sediment concentration maps derived from ERTS-1 digital tapes, the University of Delaware has been collecting water samples and other data from boats and helicopters. In order to increase the number of samples at the exact time of the ERTS-1 pass over Delaware Bay, pleasure craft were organized to obtain samples of the entire test site. On the ERTS-1 pass of July second, scientists were stationed at three public boat launches along the Bay to hand out sampling packets to interested boaters. The packets contained two litre sampling bottles, a map, data card, and a pen. The boaters were asked to fill the two bottles between 11 and 11:15 a.m., mark their location on the map, and fill out the data card. Forty-nine packets were handed out of which 40 were returned (82%). Only four of the 40 were not in the alloted time range. This gave 36 real time data points covering approximately 30 nautical miles. The samples are being analyzed for sediment concentration, particle size, and salinity. Participating boaters will receive a copy of an ERTS image of the Delaware Bay and a summary report of the project. Because of the success of the project, future use of pleasure boaters is being planned.

  7. Molecular sexing of unusually large numbers of Spheniscus magellanicus (Spheniscidae) washed ashore along the Brazilian coast in 2008.

    PubMed

    Reis, E C; Aires, R M; Moura, J F; Matias, C A R; Tavares, M; Ott, P H; Siciliano, S; Lôbo-Hajdu, G

    2011-12-05

    There have been few studies on Magellanic penguins (Spheniscus magellanicus). In 2008, these penguins washed ashore along the Brazilian coast in unusually high numbers, some reaching as far as northeast Brazil. As Magellanic penguins show little sexual dimorphism, sex determination by morphological features is not accurate. Here, we tested a molecular procedure for sexing specimens of S. magellanicus washed ashore along the coasts of Sergipe, Rio de Janeiro and Rio Grande do Sul in 2008, comparing the sex ratio between these localities. Tissue samples were collected from 135 dead, beached specimens. We carried out total genomic DNA extraction and CHD-Z/CHD-W gene amplification by PCR using P2 and P8 primers. Amplicons were separated by 12% acrylamide gel electrophoresis. We found a greater proportion of females (70%). Sex could be determined because females have two intronic regions of CHD gene of different size in the sex chromosomes, visualized as two bands on the gel (380 and 400 bp approximately), while males have only one (400 bp). Therefore, this method proved to be effective and sensitive for sex determination of S. magellanicus individuals. Data on sex ratios are useful for understanding the dynamics and ecology of Magellanic penguin populations.

  8. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

    PubMed Central

    Ravasi, Timothy; Suzuki, Harukazu; Pang, Ken C.; Katayama, Shintaro; Furuno, Masaaki; Okunishi, Rie; Fukuda, Shiro; Ru, Kelin; Frith, Martin C.; Gongora, M. Milena; Grimmond, Sean M.; Hume, David A.; Hayashizaki, Yoshihide; Mattick, John S.

    2006-01-01

    Recent large-scale analyses of mainly full-length cDNA libraries generated from a variety of mouse tissues indicated that almost half of all representative cloned sequences did not contain an apparent protein-coding sequence, and were putatively derived from non-protein-coding RNA (ncRNA) genes. However, many of these clones were singletons and the majority were unspliced, raising the possibility that they may be derived from genomic DNA or unprocessed pre-mRNA contamination during library construction, or alternatively represent nonspecific “transcriptional noise.” Here we show, using reverse transcriptase-dependent PCR, microarray, and Northern blot analyses, that many of these clones were derived from genuine transcripts of unknown function whose expression appears to be regulated. The ncRNA transcripts have larger exons and fewer introns than protein-coding transcripts. Analysis of the genomic landscape around these sequences indicates that some cDNA clones were produced not from terminal poly(A) tracts but internal priming sites within longer transcripts, only a minority of which is encompassed by known genes. A significant proportion of these transcripts exhibit tissue-specific expression patterns, as well as dynamic changes in their expression in macrophages following lipopolysaccharide stimulation. Taken together, the data provide strong support for the conclusion that ncRNAs are an important, regulated component of the mammalian transcriptome. PMID:16344565

  9. Drug discovery using very large numbers of patents. General strategy with extensive use of match and edit operations

    NASA Astrophysics Data System (ADS)

    Robson, Barry; Li, Jin; Dettinger, Richard; Peters, Amanda; Boyer, Stephen K.

    2011-05-01

    A patent data base of 6.7 million compounds generated by a very high performance computer (Blue Gene) requires new techniques for exploitation when extensive use of chemical similarity is involved. Such exploitation includes the taxonomic classification of chemical themes, and data mining to assess mutual information between themes and companies. Importantly, we also launch candidates that evolve by "natural selection" as failure of partial match against the patent data base and their ability to bind to the protein target appropriately, by simulation on Blue Gene. An unusual feature of our method is that algorithms and workflows rely on dynamic interaction between match-and-edit instructions, which in practice are regular expressions. Similarity testing by these uses SMILES strings and, less frequently, graph or connectivity representations. Examining how this performs in high throughput, we note that chemical similarity and novelty are human concepts that largely have meaning by utility in specific contexts. For some purposes, mutual information involving chemical themes might be a better concept.

  10. The Mitochondrial Genome of the Leaf-Cutter Ant Atta laevigata: A Mitogenome with a Large Number of Intergenic Spacers

    PubMed Central

    Rodovalho, Cynara de Melo; Lyra, Mariana Lúcio; Ferro, Milene; Bacci, Maurício

    2014-01-01

    In this paper we describe the nearly complete mitochondrial genome of the leaf-cutter ant Atta laevigata, assembled using transcriptomic libraries from Sanger and Illumina next generation sequencing (NGS), and PCR products. This mitogenome was found to be very large (18,729 bp), given the presence of 30 non-coding intergenic spacers (IGS) spanning 3,808 bp. A portion of the putative control region remained unsequenced. The gene content and organization correspond to that inferred for the ancestral pancrustacea, except for two tRNA gene rearrangements that have been described previously in other ants. The IGS were highly variable in length and dispersed through the mitogenome. This pattern was also found for the other hymenopterans in particular for the monophyletic Apocrita. These spacers with unknown function may be valuable for characterizing genome evolution and distinguishing closely related species and individuals. NGS provided better coverage than Sanger sequencing, especially for tRNA and ribosomal subunit genes, thus facilitating efforts to fill in sequence gaps. The results obtained showed that data from transcriptomic libraries contain valuable information for assembling mitogenomes. The present data also provide a source of molecular markers that will be very important for improving our understanding of genomic evolutionary processes and phylogenetic relationships among hymenopterans. PMID:24828084

  11. The mitochondrial genome of the leaf-cutter ant Atta laevigata: a mitogenome with a large number of intergenic spacers.

    PubMed

    Rodovalho, Cynara de Melo; Lyra, Mariana Lúcio; Ferro, Milene; Bacci, Maurício

    2014-01-01

    In this paper we describe the nearly complete mitochondrial genome of the leaf-cutter ant Atta laevigata, assembled using transcriptomic libraries from Sanger and Illumina next generation sequencing (NGS), and PCR products. This mitogenome was found to be very large (18,729 bp), given the presence of 30 non-coding intergenic spacers (IGS) spanning 3,808 bp. A portion of the putative control region remained unsequenced. The gene content and organization correspond to that inferred for the ancestral pancrustacea, except for two tRNA gene rearrangements that have been described previously in other ants. The IGS were highly variable in length and dispersed through the mitogenome. This pattern was also found for the other hymenopterans in particular for the monophyletic Apocrita. These spacers with unknown function may be valuable for characterizing genome evolution and distinguishing closely related species and individuals. NGS provided better coverage than Sanger sequencing, especially for tRNA and ribosomal subunit genes, thus facilitating efforts to fill in sequence gaps. The results obtained showed that data from transcriptomic libraries contain valuable information for assembling mitogenomes. The present data also provide a source of molecular markers that will be very important for improving our understanding of genomic evolutionary processes and phylogenetic relationships among hymenopterans.

  12. Analysis and Management of Large-Scale Activities Based on Interface

    NASA Astrophysics Data System (ADS)

    Yang, Shaofan; Ji, Jingwei; Lu, Ligang; Wang, Zhiyi

    Based on the concepts of system safety engineering, life-cycle and interface that comes from American system safety standard MIL-STD-882E, and apply them to the process of risk analysis and management of large-scale activities. Identify the involved personnel, departments, funds and other contents throughout the life cycle of large-scale activities. Recognize and classify the ultimate risk sources of people, objects and environment of large-scale activities from the perspective of interface. Put forward the accident cause analysis model according to the previous large-scale activities' accidents and combine with the analysis of the risk source interface. Analyze the risks of each interface and summary various types of risks the large-scale activities faced. Come up with the risk management consciousness, policies and regulations, risk control and supervision departments improvement ideas.

  13. A novel method for the activity measurement of large-area beta reference sources.

    PubMed

    Stanga, D; De Felice, P; Keightley, J; Capogni, M; Ioan, M R

    2016-03-01

    A novel method has been developed for the activity measurement of large-area beta reference sources. It makes use of two emission rate measurements and is based on the weak dependence between the source activity and the activity distribution for a given value of transmission coefficient. The method was checked experimentally by measuring the activity of two ((60)Co and (137)Cs) large-area reference sources constructed from anodized aluminum foils. Measurement results were compared with the activity values measured by gamma spectrometry. For each source, they agree within one standard uncertainty and also agree within the same limits with the certified values of the source activity.

  14. Oscillatory Activity in the Infant Brain and the Representation of Small Numbers

    PubMed Central

    Leung, Sumie; Mareschal, Denis; Rowsell, Renee; Simpson, David; Iaria, Leon; Grbic, Amanda; Kaufman, Jordy

    2016-01-01

    Gamma-band oscillatory activity (GBA) is an established neural signature of sustained occluded object representation in infants and adults. However, it is not yet known whether the magnitude of GBA in the infant brain reflects the quantity of occluded items held in memory. To examine this, we compared GBA of 6–8 month-old infants during occlusion periods after the representation of two objects vs. that of one object. We found that maintaining a representation of two objects during occlusion resulted in significantly greater GBA relative to maintaining a single object. Further, this enhancement was located in the right occipital region, which is consistent with previous object representation research in adults and infants. We conclude that enhanced GBA reflects neural processes underlying infants’ representation of small numbers. PMID:26903821

  15. Array Effects in Large Wind Farms. Cooperative Research and Development Final Report, CRADA Number CRD-09-343

    SciTech Connect

    Moriarty, Patrick

    2016-02-23

    The effects of wind turbine wakes within operating wind farms have a substantial impact on the overall energy production from the farm. The current generation of models drastically underpredicts the impact of these wakes leading to non-conservative estimates of energy capture and financial losses to wind farm operators and developers. To improve these models, detailed research of operating wind farms is necessary. Rebecca Barthelmie of Indiana University is a world leader of wind farm wakes effects and would like to partner with NREL to help improve wind farm modeling by gathering additional wind farm data, develop better models and increase collaboration with European researchers working in the same area. This is currently an active area of research at NREL and the capabilities of both parties should mesh nicely.

  16. Dab2IP GTPase activating protein regulates dendrite development and synapse number in cerebellum.

    PubMed

    Qiao, Shuhong; Kim, Sun-Hong; Heck, Detlef; Goldowitz, Daniel; LeDoux, Mark S; Homayouni, Ramin

    2013-01-01

    DOC-2/DAB-2 interacting protein (Dab2IP) is a GTPase activating protein that binds to Disabled-1, a cytosolic adapter protein involved in Reelin signaling and brain development. Dab2IP regulates PI3K-AKT signaling and is associated with metastatic prostate cancer, abdominal aortic aneurysms and coronary heart disease. To date, the physiological function of Dab2IP in the nervous system, where it is highly expressed, is relatively unknown. In this study, we generated a mouse model with a targeted disruption of Dab2IP using a retrovirus gene trap strategy. Unlike reeler mice, Dab2IP knock-down mice did not exhibit severe ataxia or cerebellar hypoplasia. However, Dab2IP deficiency produced a number of cerebellar abnormalities such as a delay in the development of Purkinje cell (PC) dendrites, a decrease in the parallel fiber synaptic marker VGluT1, and an increase in the climbing fiber synaptic marker VGluT2. These findings demonstrate for the first time that Dab2IP plays an important role in dendrite development and regulates the number of synapses in the cerebellum.

  17. Effects of adding fluids to solid foods on muscle activity and number of chewing cycles.

    PubMed

    van der Bilt, Andries; Engelen, Lina; Abbink, Jan; Pereira, Luciano J

    2007-06-01

    The production of a sufficient amount of saliva is indispensable for good chewing. In the present study, we examined the hypothesis that adding fluid to a food will facilitate the chewing process, especially for dry foods. The effect might be larger for subjects with relatively low salivary flow rates. Furthermore, adding fluids that contain mucins or alpha-amylase may have a larger facilitating effect on mastication than the addition of water alone. Twenty subjects chewed on melba toast, breakfast cake, carrot, peanut, and Gouda cheese. In addition, they chewed on these foods after different volumes of water, artificial saliva containing mucins, or a solution of alpha-amylase had been added. Muscle activity and number of chewing strokes until swallowing were measured. The salivary flow rates of the subjects were also determined. Adding fluid to the food significantly reduced the number of chewing cycles and total muscular work (i.e. the integrated surface electromyograpy of masseter and temporalis muscles measured bilaterally, summed for all chewing cycles) until swallowing for all foods, except carrot. The largest effects were observed for melba and cake, which are dry products requiring sufficient saliva to form a coherent bolus safe for swallowing. More facilitation of the chewing process was observed after adding fluid to breakfast cake for subjects with relatively low salivary flow rates. The type of fluid had no significant effect on the chewing process.

  18. Efficient Screening of Climate Model Sensitivity to a Large Number of Perturbed Input Parameters [plus supporting information

    DOE PAGES

    Covey, Curt; Lucas, Donald D.; Tannahill, John; ...

    2013-07-01

    Modern climate models contain numerous input parameters, each with a range of possible values. Since the volume of parameter space increases exponentially with the number of parameters N, it is generally impossible to directly evaluate a model throughout this space even if just 2-3 values are chosen for each parameter. Sensitivity screening algorithms, however, can identify input parameters having relatively little effect on a variety of output fields, either individually or in nonlinear combination.This can aid both model development and the uncertainty quantification (UQ) process. Here we report results from a parameter sensitivity screening algorithm hitherto untested in climate modeling,more » the Morris one-at-a-time (MOAT) method. This algorithm drastically reduces the computational cost of estimating sensitivities in a high dimensional parameter space because the sample size grows linearly rather than exponentially with N. It nevertheless samples over much of the N-dimensional volume and allows assessment of parameter interactions, unlike traditional elementary one-at-a-time (EOAT) parameter variation. We applied both EOAT and MOAT to the Community Atmosphere Model (CAM), assessing CAM’s behavior as a function of 27 uncertain input parameters related to the boundary layer, clouds, and other subgrid scale processes. For radiation balance at the top of the atmosphere, EOAT and MOAT rank most input parameters similarly, but MOAT identifies a sensitivity that EOAT underplays for two convection parameters that operate nonlinearly in the model. MOAT’s ranking of input parameters is robust to modest algorithmic variations, and it is qualitatively consistent with model development experience. Supporting information is also provided at the end of the full text of the article.« less

  19. Efficient Screening of Climate Model Sensitivity to a Large Number of Perturbed Input Parameters [plus supporting information

    SciTech Connect

    Covey, Curt; Lucas, Donald D.; Tannahill, John; Garaizar, Xabier; Klein, Richard

    2013-07-01

    Modern climate models contain numerous input parameters, each with a range of possible values. Since the volume of parameter space increases exponentially with the number of parameters N, it is generally impossible to directly evaluate a model throughout this space even if just 2-3 values are chosen for each parameter. Sensitivity screening algorithms, however, can identify input parameters having relatively little effect on a variety of output fields, either individually or in nonlinear combination.This can aid both model development and the uncertainty quantification (UQ) process. Here we report results from a parameter sensitivity screening algorithm hitherto untested in climate modeling, the Morris one-at-a-time (MOAT) method. This algorithm drastically reduces the computational cost of estimating sensitivities in a high dimensional parameter space because the sample size grows linearly rather than exponentially with N. It nevertheless samples over much of the N-dimensional volume and allows assessment of parameter interactions, unlike traditional elementary one-at-a-time (EOAT) parameter variation. We applied both EOAT and MOAT to the Community Atmosphere Model (CAM), assessing CAM’s behavior as a function of 27 uncertain input parameters related to the boundary layer, clouds, and other subgrid scale processes. For radiation balance at the top of the atmosphere, EOAT and MOAT rank most input parameters similarly, but MOAT identifies a sensitivity that EOAT underplays for two convection parameters that operate nonlinearly in the model. MOAT’s ranking of input parameters is robust to modest algorithmic variations, and it is qualitatively consistent with model development experience. Supporting information is also provided at the end of the full text of the article.

  20. [Coordination of the myoelectrical activity of the large and small intestine].

    PubMed

    Lychkova, A E

    2012-01-01

    Coordination of the myoelectrical activity of the large and small intestine was studied. Pacemaker cells of intestine are predominantly located at the proximal divisions of large and small intestine and have an increased spontaneous slow-wave activity, which ensures the distribution of excitation in smooth muscle underlying intestines. Due to the ileocecal coordination by sequential motor activity of small and large intestine is provided. The distal direction gradient of slow waves frequency reduction was established. Pacemaker cells possess certain structural specificity and is specialized in the spontaneous bioelectric activity.

  1. SU-E-T-629: Feasibility Study of Treating Multiple Brain Tumors with Large Number of Noncoplanar IMRT Beams

    SciTech Connect

    Dong, P; Ma, L

    2014-06-15

    Purpose: To study the feasibility of treating multiple brain tumors withlarge number of noncoplanar IMRT beams. Methods: Thirty beams are selected from 390 deliverable beams separated by six degree in 4pi space. Beam selection optimization is based on a column generation algorithm. MLC leaf size is 2 mm. Dose matrices are calculated with collapsed cone convolution and superposition method in a 2 mm by 2mm by 2 mm grid. Twelve brain tumors of various shapes, sizes and locations are used to generate four plans treating 3, 6, 9 and 12 tumors. The radiation dose was 20 Gy prescribed to the 100% isodose line. Dose Volume Histograms for tumor and brain were compared. Results: All results are based on a 2 mm by 2 mm by 2 mm CT grid. For 3, 6, 9 and 12 tumor plans, minimum tumor doses are all 20 Gy. Mean tumor dose are 20.0, 20.1, 20.1 and 20.1 Gy. Maximum tumor dose are 23.3, 23.6, 25.4 and 25.4 Gy. Mean ventricles dose are 0.7, 1.7, 2.4 and 3.1 Gy.Mean subventricular zone dose are 0.8, 1.3, 2.2 and 3.2 Gy. Average Equivalent uniform dose (gEUD) values for tumor are 20.1, 20.1, 20.2 and 20.2 Gy. The conformity index (CI) values are close to 1 for all 4 plans. The gradient index (GI) values are 2.50, 2.05, 2.09 and 2.19. Conclusion: Compared with published Gamma Knife treatment studies, noncoplanar IMRT treatment plan is superior in terms of dose conformity. Due to maximum limit of beams per plan, Gamma knife has to treat multiple tumors separately in different plans. Noncoplanar IMRT plans theoretically can be delivered in a single plan on any modern linac with an automated couch and image guidance. This warrants further study of using noncoplanar IMRT as a viable treatment solution for multiple brain tumors.

  2. Transient Migration of Large Numbers of CD14++ CD16+ Monocytes to the Draining Lymph Node after Onset of Inflammation

    PubMed Central

    Lund, Hege; Boysen, Preben; Åkesson, Caroline Piercey; Lewandowska-Sabat, Anna Monika; Storset, Anne K.

    2016-01-01

    The dynamics of skin-draining cells following infection or vaccination provide important insight into the initiation of immune responses. In this study, the local recruitment and activation of immune cells in draining lymph nodes (LNs) was studied in calves in an adjuvant-induced inflammation. A transient but remarkably strong recruitment of monocytes was demonstrated after onset of inflammation, constituting up to 41% of live cells in the draining LNs after 24 h. Numerous CD14+ cells were visualized in subcutaneous tissues and draining LNs, and the majority of these cells did not express dendritic cell-associated markers CD205 and CD11c. In the LNs, recruited cells were predominately of a CD14++ and CD16+ phenotype, consistent with an intermediate monocyte subset characterized to possess a high inflammatory potential. Moreover, monocytes from the draining LN showed a high expression of genes coding for pro-inflammatory cytokines, including IL-1β, IL-6, TNFa, and TGFβ. Shortly after their appearance in the LN cortical areas, the monocytes had moved into the medulla followed by an increase in peripheral blood. In conclusion, this study provides novel information on in vivo monocyte recruitment and migration after onset of inflammation. PMID:27621730

  3. Temporal leukocyte numbers and granulocyte activation in pulsatile and rotary ventricular assist device patients.

    PubMed

    Woolley, Joshua R; Teuteberg, Jeffrey J; Bermudez, Christian A; Bhama, Jay K; Lockard, Kathleen L; Kormos, Robert L; Wagner, William R

    2014-06-01

    Individual ventricular assist device (VAD) design may affect leukocytes and impact immunity. Few studies have presented leukocyte and infection profiles in VAD patients over the course of the implant period. CD11b (MAC-1) expression on granulocytes is an indicator of activation during inflammation, mediating extravasation and the release of reactive oxygen species in tissue. No reported studies have presented MAC-1 expression on circulating granulocytes in VAD patients. Fifty-six patients implanted at a single center with a HeartMate II (HMII; n = 32), HeartWare (HW; n = 12), or Thoratec pneumatic VAD (PVAD; n = 12) between 1999 and 2011 were followed for 120 days of support. The leukocyte profiles and infectious events of all patients were evaluated; additionally, a subset had MAC-1 expression on circulating granulocytes was measured (HMII n = 9; HW n = 7; PVAD n = 4). All groups exhibited a significant peak in leukocyte numbers at postoperative day (POD) 14 while simultaneously experiencing a significant decrease in hematocrit. HMII patients exhibited a 3.2-fold increase in granulocyte MAC-1 expression at POD 14, and the temporal trend over the implant period differed from that experienced by HW patients. Further, HW patients experienced significantly fewer infection events. Alterations in leukocyte profiles and granulocyte activation experienced by VAD patients appear to be device-specific. Elevations in leukocyte activation may be related to an increased risk for infection, although the specific relationship between these phenomena in this patient group is not known.

  4. Analysis of the latitudinal variability of tropospheric ozone in the Arctic using the large number of aircraft and ozonesonde observations in early summer 2008

    NASA Astrophysics Data System (ADS)

    Ancellet, Gerard; Daskalakis, Nikos; Raut, Jean Christophe; Tarasick, David; Hair, Jonathan; Quennehen, Boris; Ravetta, François; Schlager, Hans; Weinheimer, Andrew J.; Thompson, Anne M.; Johnson, Bryan; Thomas, Jennie L.; Law, Katharine S.

    2016-10-01

    During the 2008 International Polar Year, the POLARCAT (Polar Study using Aircraft, Remote Sensing, Surface Measurements, and Models of Climate Chemistry, Aerosols, and Transport) campaign, conducted in summer over Greenland and Canada, produced a large number of measurements from three aircraft and seven ozonesonde stations. Here we present an observation-integrated analysis based on three different types of O3 measurements: airborne lidar, airborne UV absorption or chemiluminescence measurement, and intensified electrochemical concentration cell (ECC) ozonesonde profiles. Discussion of the latitudinal and vertical variability of tropospheric ozone north of 55° N during this period is performed with the aid of a regional model (WFR-Chem). The model is able to reproduce the O3 latitudinal and vertical variability but with a negative O3 bias of 6-15 ppbv in the free troposphere above 4 km, especially over Canada. For Canada, large average CO concentrations in the free troposphere above 4 km ( > 130 ppbv) and the weak correlation (< 30 %) of O3 and PV suggest that stratosphere-troposphere exchange (STE) is not the major contributor to average tropospheric ozone at latitudes less than 70° N, due to the fact that local biomass burning (BB) emissions were significant during the 2008 summer period. Conversely, significant STE is found over Greenland according to the better O3 vs. PV correlation ( > 40 %) and the higher values of the 75th PV percentile. It is related to the persistence of cyclonic activity during the summer over Baffin Bay. Using differences between average concentration above Northern and Southern Canada, a weak negative latitudinal summer ozone gradient of -6 to -8 ppbv is found in the mid-troposphere between 4 and 8 km. This is attributed to an efficient O3 photochemical production from BB emissions at latitudes less than 65° N, while the STE contribution is more homogeneous in the latitude range 55-70° N. A positive ozone latitudinal gradient of

  5. Generalized investigation of the rotation-activity relation: favoring rotation period instead of Rossby number

    SciTech Connect

    Reiners, A.; Passegger, V. M.; Schüssler, M.

    2014-10-20

    Magnetic activity in Sun-like and low-mass stars causes X-ray coronal emission which is stronger for more rapidly rotating stars. This relation is often interpreted in terms of the Rossby number, i.e., the ratio of rotation period to convective overturn time. We reconsider this interpretation on the basis of the observed X-ray emission and rotation periods of 821 stars with masses below 1.4 M {sub ☉}. A generalized analysis of the relation between X-ray luminosity normalized by bolometric luminosity, L {sub X}/L {sub bol}, and combinations of rotational period, P, and stellar radius, R, shows that the Rossby formulation does not provide the solution with minimal scatter. Instead, we find that the relation L {sub X}/L {sub bol}∝P {sup –2} R {sup –4} optimally describes the non-saturated fraction of the stars. This relation is equivalent to L {sub X}∝P {sup –2}, indicating that the rotation period alone determines the total X-ray emission. Since L {sub X} is directly related to the magnetic flux at the stellar surface, this means that the surface flux is determined solely by the star's rotation and is independent of other stellar parameters. While a formulation in terms of a Rossby number would be consistent with these results if the convective overturn time scales exactly as L{sub bol}{sup −1/2}, our generalized approach emphasizes the need to test a broader range of mechanisms for dynamo action in cool stars.

  6. Interpretation of clinical relevance of X-chromosome copy number variations identified in a large cohort of individuals with cognitive disorders and/or congenital anomalies.

    PubMed

    Willemsen, Marjolein H; de Leeuw, Nicole; de Brouwer, Arjan P M; Pfundt, Rolph; Hehir-Kwa, Jayne Y; Yntema, Helger G; Nillesen, Willy M; de Vries, Bert B A; van Bokhoven, Hans; Kleefstra, Tjitske

    2012-11-01

    Genome-wide array studies are now routinely being used in the evaluation of patients with cognitive disorders (CD) and/or congenital anomalies (CA). Therefore, inevitably each clinician is confronted with the challenging task of the interpretation of copy number variations detected by genome-wide array platforms in a diagnostic setting. Clinical interpretation of autosomal copy number variations is already challenging, but assessment of the clinical relevance of copy number variations of the X-chromosome is even more complex. This study provides an overview of the X-Chromosome copy number variations that we have identified by genome-wide array analysis in a large cohort of 4407 male and female patients. We have made an interpretation of the clinical relevance of each of these copy number variations based on well-defined criteria and previous reports in literature and databases. The prevalence of X-chromosome copy number variations in this cohort was 57/4407 (∼1.3%), of which 15 (0.3%) were interpreted as (likely) pathogenic.

  7. Large space antenna communications systems: Integrated Langley Research Center/Jet Propulsion Laboratory development activities. 2: Langley Research Center activities

    NASA Technical Reports Server (NTRS)

    Cambell, T. G.; Bailey, M. C.; Cockrell, C. R.; Beck, F. B.

    1983-01-01

    The electromagnetic analysis activities at the Langley Research Center are resulting in efficient and accurate analytical methods for predicting both far- and near-field radiation characteristics of large offset multiple-beam multiple-aperture mesh reflector antennas. The utilization of aperture integration augmented with Geometrical Theory of Diffraction in analyzing the large reflector antenna system is emphasized.

  8. Effect of aerosol number concentration on cloud droplet dispersion: A large-eddy simulation study and implications for aerosol indirect forcing

    NASA Astrophysics Data System (ADS)

    Lu, Miao-Ling; Seinfeld, John H.

    2006-01-01

    Through three-dimensional large-eddy simulations of marine stratocumulus we explore the factors that control the cloud spectral relative dispersion (ratio of cloud droplet spectral width to the mean radius of the distribution) as a function of aerosol number concentration and the extent to which the relative dispersion either enhances or mitigates the Twomey effect. We find that relative dispersion decreases with increasing aerosol number concentration (for aerosol number concentrations less than about 1000 cm-3) because smaller droplets resulting from higher aerosol number concentrations inhibit precipitation and lead to (1) less spectral broadening by suppressed collision and coalescence processes and (2) more spectral narrowing by droplet condensational growth at higher updraft velocity because reduced drizzle latent heating at cloud top results in increased boundary layer turbulent kinetic energy production by buoyancy and thereby stronger turbulence. Increased spectral broadening owing to increased cloud-top entrainment mixing, also as a result of increased boundary layer turbulence, is relatively insignificant compared with outcomes 1 and 2. The coefficient k, an important parameter that relates cloud droplet effective radius and volume mean radius in large-scale models, is a function of skewness and relative dispersion of the distribution and is negatively correlated with relative dispersion. Increasing k with increasing aerosol number concentration leads to maximum enhancement of the cloud susceptibility (the change of cloud optical depth due to change of cloud droplet number concentration) over that attributable to the Twomey effect alone by about 4.2% and 39% for simulated FIRE and ASTEX cases, respectively.

  9. Poly(ADP-Ribose)Polymerase Activity Controls Plant Growth by Promoting Leaf Cell Number

    PubMed Central

    Schulz, Philipp; Jansseune, Karel; Degenkolbe, Thomas; Méret, Michaël; Claeys, Hannes; Skirycz, Aleksandra; Teige, Markus; Willmitzer, Lothar; Hannah, Matthew A.

    2014-01-01

    A changing global environment, rising population and increasing demand for biofuels are challenging agriculture and creating a need for technologies to increase biomass production. Here we demonstrate that the inhibition of poly (ADP-ribose) polymerase activity is a promising technology to achieve this under non-stress conditions. Furthermore, we investigate the basis of this growth enhancement via leaf series and kinematic cell analysis as well as single leaf transcriptomics and plant metabolomics under non-stress conditions. These data indicate a regulatory function of PARP within cell growth and potentially development. PARP inhibition enhances growth of Arabidopsis thaliana by enhancing the cell number. Time course single leaf transcriptomics shows that PARP inhibition regulates a small subset of genes which are related to growth promotion, cell cycle and the control of metabolism. This is supported by metabolite analysis showing overall changes in primary and particularly secondary metabolism. Taken together the results indicate a versatile function of PARP beyond its previously reported roles in controlling plant stress tolerance and thus can be a useful target for enhancing biomass production. PMID:24587323

  10. Active Flow Control at Low Reynolds Numbers on a NACA 0015 Airfoil

    NASA Technical Reports Server (NTRS)

    Melton, LaTunia Pack; Hannon, Judith; Yao, Chung-Sheng; Harris, Jerome

    2008-01-01

    Results from a low Reynolds number wind tunnel experiment on a NACA 0015 airfoil with a 30% chord trailing edge flap tested at deflection angles of 0, 20, and 40 are presented and discussed. Zero net mass flux periodic excitation was applied at the ap shoulder to control flow separation for flap deflections larger than 0. The primary objective of the experiment was to compare force and moment data obtained from integrating surface pressures to data obtained from a 5-component strain-gage balance in preparation for additional three-dimensional testing of the model. To achieve this objective, active flow control is applied at an angle of attack of 6 where published results indicate that oscillatory momentum coefficients exceeding 1% are required to delay separation. Periodic excitation with an oscillatory momentum coefficient of 1.5% and a reduced frequency of 0.71 caused a significant delay of separation on the airfoil with a flap deflection of 20. Higher momentum coefficients at the same reduced frequency were required to achieve a similar level of flow attachment on the airfoil with a flap deflection of 40. There was a favorable comparison between the balance and integrated pressure force and moment results.

  11. Engineering of pseudoislets: effect on insulin secretion activity by cell number, cell population, and microchannel networks.

    PubMed

    Kojima, N; Takeuchi, S; Sakai, Y

    2014-05-01

    Engineered pseudoislets reconstituted from a suspension of pancreatic α and β cells have the potential to relieve the shortage of donor islets for transplantation in the treatment of type 1 diabetes. However, the methods to fabricate pseudoislets are not well developed. In this study, we attempted to generate pseudoislets, which show a higher potential for glucose-induced insulin secretion, by altering total cell number, adjusting the cell ratio of pancreatic α and β cells, and fabricating microchannel networks with the use of alginate hydrogel beads. To effectively aggregate α and β cells and hydrogel beads, we used a previously established rapid aggregation method. When pseudoislets were reconstituted with 8,000 cells in a 1:8 α/β-cell ratio, we observed that the glucose-induced insulin secretion was enhanced by 3.1 times compared with the pseudoislets formed with β cells only. In addition, embedding of microchannel networks increased the insulin secretion rate by 4.4 times compared with the pseudoislets without the microstructures. These findings demonstrated that active modification was effective in reconstituting higher functional pseudoislets, which may be useful for islet transplantation.

  12. Poly(ADP-ribose)polymerase activity controls plant growth by promoting leaf cell number.

    PubMed

    Schulz, Philipp; Jansseune, Karel; Degenkolbe, Thomas; Méret, Michaël; Claeys, Hannes; Skirycz, Aleksandra; Teige, Markus; Willmitzer, Lothar; Hannah, Matthew A

    2014-01-01

    A changing global environment, rising population and increasing demand for biofuels are challenging agriculture and creating a need for technologies to increase biomass production. Here we demonstrate that the inhibition of poly (ADP-ribose) polymerase activity is a promising technology to achieve this under non-stress conditions. Furthermore, we investigate the basis of this growth enhancement via leaf series and kinematic cell analysis as well as single leaf transcriptomics and plant metabolomics under non-stress conditions. These data indicate a regulatory function of PARP within cell growth and potentially development. PARP inhibition enhances growth of Arabidopsis thaliana by enhancing the cell number. Time course single leaf transcriptomics shows that PARP inhibition regulates a small subset of genes which are related to growth promotion, cell cycle and the control of metabolism. This is supported by metabolite analysis showing overall changes in primary and particularly secondary metabolism. Taken together the results indicate a versatile function of PARP beyond its previously reported roles in controlling plant stress tolerance and thus can be a useful target for enhancing biomass production.

  13. EGFR-activating mutations, DNA copy number abundance of ErbB family, and prognosis in lung adenocarcinoma.

    PubMed

    Chen, Hsuan-Yu; Liu, Chia-Hsin; Chang, Ya-Hsuan; Yu, Sung-Liang; Ho, Bing-Ching; Hsu, Chung-Ping; Yang, Tsung-Ying; Chen, Kun-Chieh; Hsu, Kuo-Hsuan; Tseng, Jeng-Sen; Hsia, Jiun-Yi; Chuang, Cheng-Yen; Chang, Chi-Sheng; Li, Yu-Cheng; Li, Ker-Chau; Chang, Gee-Chen; Yang, Pan-Chyr

    2016-02-23

    In this study, EGFR-activating mutation status and DNA copy number abundances of members of ErbB family were measured in 261 lung adenocarcinomas. The associations between DNA copy number abundances of ErbB family, EGFR-activating mutation status, and prognosis were explored. Results showed that DNA copy number abundances of EGFR, ERBB2, ERBB3, and ERBB4 had associations with overall survival in lung adenocarcinoma with EGFR-activating mutations. In the stratification analysis, only ERBB2 showed significant discrepancy in patients carrying wild type EGFR and other members of ErbB family in patients carrying EGFR-activating mutation. This indicated that CNAs of ErbB family had effect modifications of EGFR-activating mutation status. Findings of this study demonstrate potential molecular guidance of patient management of lung adenocarcinoma with or without EGFR-activating mutations.

  14. Research on elastic large space structures as "plants' for active control

    NASA Technical Reports Server (NTRS)

    Ashley, H.; Vonflotow, A.

    1983-01-01

    Research on active control of large space structures is discussed. Intrinsic damping in monolithic metallic structures is discussed. Thermal relaxation and grain boundary relaxation are discussed, as are properties of thermal damping.

  15. Active Control of High Reynolds Number Supersonic Jets Using Plasma Actuators

    DTIC Science & Technology

    2010-02-01

    LAFPAs) is conducted over a wide range of the fully expanded jet Mach numbers (MJ or simply jet Mach number ). The jet Mach numbers covered in the...present research are 0.9 (with a converging nozzle), 1.2 (overexpanded), 1.3 (perfectly expanded), and 1.4 (underexpanded) with a design Mach number 1.3... number does not change significantly under varying conditions. In a comparison of Mach 0.3 and Mach 0.8 jets, it was concluded that the higher Mach

  16. A Fundamental Study for Efficient Implementaion of Online Collaborative Activities in Large-Scale Classes

    ERIC Educational Resources Information Center

    Matsuba, Ryuichi; Suzuki, Yusei; Kubota, Shin-Ichiro; Miyazaki, Makoto

    2015-01-01

    We study tactics for writing skills development through cross-disciplinary learning in online large-scale classes, and particularly are interested in implementation of online collaborative activities such as peer reviewing of writing. The goal of our study is to carry out collaborative works efficiently via online effectively in large-scale…

  17. Testosterone levels and their associations with lifetime number of opposite sex partners and remarriage in a large sample of American elderly men and women.

    PubMed

    Pollet, Thomas V; van der Meij, Leander; Cobey, Kelly D; Buunk, Abraham P

    2011-06-01

    Testosterone (T) has been argued to modulate mating and parenting behavior in many species, including humans. The role of T for these behaviors has been framed as the challenge hypothesis. Following this hypothesis, T should be positively associated with the number of opposite sex partners a male has. Indeed research in humans has shown that T is positively related to the number of opposite sex partners a young man has had. Here we test, in both men and women, whether this relationship extends to the lifetime number of sex partners. We also explored whether or not T was associated with current marital status, partnership status and whether or not the participant remarried. Using a large sample of elderly men and women (each sample n>700), we show that T is positively and sizably associated with the number of opposite sex partners in men. When controlling for potential confounding variables such as educational attainment, age, BMI, ethnicity, specific use of a medication and time of sampling this effect remained. For women, the relationship between T and number of opposite sex partners was positive but did not prove to be robust. In both men and women there was no evidence for an association between T and current marital status and partnership status (being in a relationship or not). However, remarriage was positively associated with T, but only in males. Results are discussed with reference to the literature on T and sex partners, remarriage and more broadly the challenge hypothesis.

  18. The Active and Periactive Zone Organization and the Functional Properties of Small and Large Synapses

    PubMed Central

    Cano, Raquel; Tabares, Lucia

    2016-01-01

    The arrival of an action potential (AP) at a synaptic terminal elicits highly synchronized quanta release. Repetitive APs produce successive synaptic vesicle (SV) fusions that require management of spent SV components in the presynaptic membrane with minimum disturbance of the secretory apparatus. To this end, the synaptic machinery is structured accordingly to the strength and the range of frequencies at which each particular synapse operates. This results in variations in the number and dimension of Active Zones (AZs), amount and distribution of SVs, and probably, in the primary endocytic mechanisms they use. Understanding better how these structural differences determine the functional response in each case has been a matter of long-term interest. Here we review the structural and functional properties of three distinct types of synapses: the neuromuscular junction (NMJ; a giant, highly reliable synapse that must exocytose a large number of quanta with each stimulus to guarantee excitation of the postsynaptic cell), the hippocampal excitatory small synapse (which most often has a single release site and a relatively small pool of vesicles), and the cerebellar mossy fiber-granule cell synapse (which possesses hundreds of release sites and is able to translocate, dock and prime vesicles at high speed). We will focus on how the release apparatus is organized in each case, the relative amount of vesicular membrane that needs to be accommodated within the periAZ upon stimulation, the different mechanisms for retrieving the excess of membrane and finally, how these factors may influence the functioning of the release sites. PMID:27252645

  19. North-south asymmetry in small and large sunspot group activity and violation of even-odd solar cycle rule

    NASA Astrophysics Data System (ADS)

    Javaraiah, J.

    2016-07-01

    According to Gnevyshev-Ohl (G-O) rule an odd-numbered cycle is stronger than its preceding even-numbered cycle. In the modern time the cycle pair (22, 23) violated this rule. By using the combined Greenwich Photoheliographic Results (GPR) and Solar Optical Observing Network (SOON) sunspot group data during the period 1874-2015, and Debrecen Photoheliographic Data (DPD) of sunspot groups during the period 1974-2015, here we have found that the solar cycle pair (22, 23) violated the G-O rule because, besides during cycle 23 a large deficiency of small sunspot groups in both the northern and the southern hemispheres, during cycle 22 a large abundance of small sunspot groups in the southern hemisphere. In the case of large and small sunspot groups the cycle pair (22, 23) violated the G-O rule in the northern and southern hemispheres, respectively, suggesting the north-south asymmetry in solar activity has a significant contribution in the violation of G-O rule. The amplitude of solar cycle 24 is smaller than that of solar cycle 23. However, Coronal Mass Ejections (CMEs) rate in the rising phases of the cycles 23 and 24 are almost same (even slightly large in cycle 24). From both the SOON and the DPD sunspot group data here we have also found that on the average the ratio of the number (counts) of large sunspot groups to the number of small sunspot groups is larger in the rising phase of cycle 24 than that in the corresponding phase of cycle 23. We suggest this could be a potential reason for the aforesaid discrepancy in the CME rates during the rising phases of cycles 23 and 24. These results have significant implication on solar cycle mechanism.

  20. Oxygen-activated growth and bandgap tunability of large single-crystal bilayer graphene

    SciTech Connect

    Hao, Yufeng; Wang, Lei; Liu, Yuanyue; Chen, Hua; Wang, Xiaohan; Tan, Cheng; Nie, Shu; Suk, Ji Won; Jiang, Tengfei; Liang, Tengfei; Xiao, Junfeng; Ye, Wenjing; Dean, Cory R.; Yakobson, Boris I.; McCarty, Kevin F.; Kim, Philip; Hone, James; Colombo, Luigi; Ruoff, Rodney S.

    2016-02-01

    Bernal (AB)-stacked bilayer graphene (BLG) is a semiconductor whose bandgap can be tuned by a transverse electric field, making it a unique material for a number of electronic and photonic devices. A scalable approach to synthesize high-quality BLG is therefore critical, which requires minimal crystalline defects in both graphene layers and maximal area of Bernal stacking, which is necessary for bandgap tunability. Here we demonstrate that in an oxygen-activated chemical vapour deposition (CVD) process, half-millimetre size, Bernal-stacked BLG single crystals can be synthesized on Cu. Besides the traditional 'surface-limited' growth mechanism for SLG (1st layer), we discovered new microscopic steps governing the growth of the 2nd graphene layer below the 1st layer as the diffusion of carbon atoms through the Cu bulk after complete dehydrogenation of hydrocarbon molecules on the Cu surface, which does not occur in the absence of oxygen. Moreover, we found that the efficient diffusion of the carbon atoms present at the interface between Cu and the 1st graphene layer further facilitates growth of large domains of the 2nd layer. The CVD BLG has superior electrical quality, with a device on/off ratio greater than 104, and a tunable bandgap up to -100 meV at a displacement field of 0.9 V nm-1.

  1. Oxygen-activated growth and bandgap tunability of large single-crystal bilayer graphene

    NASA Astrophysics Data System (ADS)

    Hao, Yufeng; Wang, Lei; Liu, Yuanyue; Chen, Hua; Wang, Xiaohan; Tan, Cheng; Nie, Shu; Suk, Ji Won; Jiang, Tengfei; Liang, Tengfei; Xiao, Junfeng; Ye, Wenjing; Dean, Cory R.; Yakobson, Boris I.; McCarty, Kevin F.; Kim, Philip; Hone, James; Colombo, Luigi; Ruoff, Rodney S.

    2016-05-01

    Bernal (AB)-stacked bilayer graphene (BLG) is a semiconductor whose bandgap can be tuned by a transverse electric field, making it a unique material for a number of electronic and photonic devices. A scalable approach to synthesize high-quality BLG is therefore critical, which requires minimal crystalline defects in both graphene layers and maximal area of Bernal stacking, which is necessary for bandgap tunability. Here we demonstrate that in an oxygen-activated chemical vapour deposition (CVD) process, half-millimetre size, Bernal-stacked BLG single crystals can be synthesized on Cu. Besides the traditional ‘surface-limited’ growth mechanism for SLG (1st layer), we discovered new microscopic steps governing the growth of the 2nd graphene layer below the 1st layer as the diffusion of carbon atoms through the Cu bulk after complete dehydrogenation of hydrocarbon molecules on the Cu surface, which does not occur in the absence of oxygen. Moreover, we found that the efficient diffusion of the carbon atoms present at the interface between Cu and the 1st graphene layer further facilitates growth of large domains of the 2nd layer. The CVD BLG has superior electrical quality, with a device on/off ratio greater than 104, and a tunable bandgap up to ˜100 meV at a displacement field of 0.9 V nm-1.

  2. Implementing Experiential Learning Activities in a Large Enrollment Introductory Food Science and Human Nutrition Course

    ERIC Educational Resources Information Center

    Bohn, Dawn M.; Schmidt, Shelly J.

    2008-01-01

    Experiential learning activities are often viewed as impractical, and potentially unfeasible, instructional tools to employ in a large enrollment course. Research has shown, though, that the metacognitive skills that students utilize while participating in experiential learning activities enable them to assess their true level of understanding and…

  3. Introductory Biology Courses: A Framework to Support Active Learning in Large Enrollment Introductory Science Courses

    ERIC Educational Resources Information Center

    Smith, Ann C.; Stewart, Richard; Shields, Patricia; Hayes-Klosteridis, Jennifer; Robinson, Paulette; Yuan, Robert

    2005-01-01

    Active learning and research-oriented activities have been increasingly used in smaller, specialized science courses. Application of this type of scientific teaching to large enrollment introductory courses has been, however, a major challenge. The general microbiology lecture/laboratory course described has been designed to incorporate published…

  4. Mathematics Goals and Activities K-6. Part I: Sets and Numbers.

    ERIC Educational Resources Information Center

    Ogle, John W.; Meek, Cleo M.

    GRADES OR AGES: K-6. SUBJECT MATTER: Mathematics; sets and numbers. ORGANIZATION AND PHYSICAL APPEARANCE: The guide is divided into two sections--sets and numbers. Within each section the content is grouped into six levels in order of increasing difficulty. Each level contains from 3 to 15 concepts. Numerous diagrams and illustrations are…

  5. 78 FR 32261 - Agency Information Collection Activities: Immigrant Petition by Alien Entrepreneur, Form Number I...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-29

    ... Petition by Alien Entrepreneur, Form Number I-526; Revision of a Currently Approved Collection ACTION: 30... Petition by Alien Entrepreneur. (3) Agency form number, if any, and the applicable component of the DHS... to determine if an alien can enter the U.S. to engage in commercial enterprise. (5) An estimate...

  6. Aerodynamic Effects of High Turbulence Intensity on a Variable-Speed Power-Turbine Blade with Large Incidence and Reynolds Number Variations

    NASA Technical Reports Server (NTRS)

    Flegel, Ashlie B.; Giel, Paul W.; Welch, Gerard E.

    2014-01-01

    The effects of high inlet turbulence intensity on the aerodynamic performance of a variable speed power turbine blade are examined over large incidence and Reynolds number ranges. These results are compared to previous measurements made in a low turbulence environment. Both high and low turbulence studies were conducted in the NASA Glenn Research Center Transonic Turbine Blade Cascade Facility. The purpose of the low inlet turbulence study was to examine the transitional flow effects that are anticipated at cruise Reynolds numbers. The current study extends this to LPT-relevant turbulence levels while perhaps sacrificing transitional flow effects. Assessing the effects of turbulence at these large incidence and Reynolds number variations complements the existing database. Downstream total pressure and exit angle data were acquired for 10 incidence angles ranging from +15.8deg to -51.0deg. For each incidence angle, data were obtained at five flow conditions with the exit Reynolds number ranging from 2.12×10(exp 5) to 2.12×10(exp 6) and at a design exit Mach number of 0.72. In order to achieve the lowest Reynolds number, the exit Mach number was reduced to 0.35 due to facility constraints. The inlet turbulence intensity, Tu, was measured using a single-wire hotwire located 0.415 axial-chord upstream of the blade row. The inlet turbulence levels ranged from 8 to 15 percent for the current study. Tu measurements were also made farther upstream so that turbulence decay rates could be calculated as needed for computational inlet boundary conditions. Downstream flow field measurements were obtained using a pneumatic five-hole pitch/yaw probe located in a survey plane 7 percent axial chord aft of the blade trailing edge and covering three blade passages. Blade and endwall static pressures were acquired for each flow condition as well. The blade loading data show that the suction surface separation that was evident at many of the low Tu conditions has been eliminated. At

  7. Aerodynamic Effects of High Turbulence Intensity on a Variable-Speed Power-Turbine Blade With Large Incidence and Reynolds Number Variations

    NASA Technical Reports Server (NTRS)

    Flegel, Ashlie B.; Giel, Paul W.; Welch, Gerard E.

    2014-01-01

    The effects of high inlet turbulence intensity on the aerodynamic performance of a variable speed power turbine blade are examined over large incidence and Reynolds number ranges. These results are compared to previous measurements made in a low turbulence environment. Both high and low turbulence studies were conducted in the NASA Glenn Research Center Transonic Turbine Blade Cascade Facility. The purpose of the low inlet turbulence study was to examine the transitional flow effects that are anticipated at cruise Reynolds numbers. The current study extends this to LPT-relevant turbulence levels while perhaps sacrificing transitional flow effects. Assessing the effects of turbulence at these large incidence and Reynolds number variations complements the existing database. Downstream total pressure and exit angle data were acquired for 10 incidence angles ranging from +15.8deg to -51.0deg. For each incidence angle, data were obtained at five flow conditions with the exit Reynolds number ranging from 2.12×10(exp 5) to 2.12×10(exp 6) and at a design exit Mach number of 0.72. In order to achieve the lowest Reynolds number, the exit Mach number was reduced to 0.35 due to facility constraints. The inlet turbulence intensity, Tu, was measured using a single-wire hotwire located 0.415 axial-chord upstream of the blade row. The inlet turbulence levels ranged from 8 to 15 percent for the current study. Tu measurements were also made farther upstream so that turbulence decay rates could be calculated as needed for computational inlet boundary conditions. Downstream flow field measurements were obtained using a pneumatic five-hole pitch/yaw probe located in a survey plane 7 percent axial chord aft of the blade trailing edge and covering three blade passages. Blade and endwall static pressures were acquired for each flow condition as well. The blade loading data show that the suction surface separation that was evident at many of the low Tu conditions has been eliminated. At

  8. Gaining A Geological Perspective Through Active Learning in the Large Lecture Classroom

    NASA Astrophysics Data System (ADS)

    Kapp, J. L.; Richardson, R. M.; Slater, S. J.

    2008-12-01

    NATS 101 A Geological Perspective is a general education course taken by non science majors. We offer 600 seats per semester, with four large lecture sections taught by different faculty members. In the past we have offered optional once a week study groups taught by graduate teaching assistants. Students often feel overwhelmed by the science and associated jargon, and many are prone to skipping lectures altogether. Optional study groups are only attended by ~50% of the students. Faculty members find the class to be a lot of work, mainly due to the grading it generates. Activities given in lecture are often short multiple choice or true false assignments, limiting the depth of understanding we can evaluate. Our students often lack math and critical thinking skills, and we spend a lot of time in lecture reintroducing ideas students should have already gotten from the text. In summer 2007 we were funded to redesign the course. Our goals were to 1) cut the cost of running the course, and 2) improve student learning. Under our redesign optional study groups were replaced by once a week mandatory break out sessions where students complete activities that have been introduced in lecture. Break out sessions substitute for one hour of lecture, and are run by undergraduate preceptors and graduate teaching assistants (GTAs). During the lecture period, lectures themselves are brief with a large portion of the class devoted to active learning in small groups. Weekly reading quizzes are submitted via the online course management system. Break out sessions allow students to spend more time interacting with their fellow students, undergraduate preceptors, and GTAs. They get one on one help in break out sessions on assignments designed to enhance the lecture material. The active lecture format means less of their time is devoted to listening passively to a lecture, and more time is spent peer learning an interacting with the instructor. Completing quizzes online allows students

  9. ActivitySim: large-scale agent based activity generation for infrastructure simulation

    SciTech Connect

    Gali, Emmanuel; Eidenbenz, Stephan; Mniszewski, Sue; Cuellar, Leticia; Teuscher, Christof

    2008-01-01

    The United States' Department of Homeland Security aims to model, simulate, and analyze critical infrastructure and their interdependencies across multiple sectors such as electric power, telecommunications, water distribution, transportation, etc. We introduce ActivitySim, an activity simulator for a population of millions of individual agents each characterized by a set of demographic attributes that is based on US census data. ActivitySim generates daily schedules for each agent that consists of a sequence of activities, such as sleeping, shopping, working etc., each being scheduled at a geographic location, such as businesses or private residences that is appropriate for the activity type and for the personal situation of the agent. ActivitySim has been developed as part of a larger effort to understand the interdependencies among national infrastructure networks and their demand profiles that emerge from the different activities of individuals in baseline scenarios as well as emergency scenarios, such as hurricane evacuations. We present the scalable software engineering principles underlying ActivitySim, the socia-technical modeling paradigms that drive the activity generation, and proof-of-principle results for a scenario in the Twin Cities, MN area of 2.6 M agents.

  10. Multiple-relaxation-time lattice Boltzmann model for incompressible miscible flow with large viscosity ratio and high Péclet number

    NASA Astrophysics Data System (ADS)

    Meng, Xuhui; Guo, Zhaoli

    2015-10-01

    A lattice Boltzmann model with a multiple-relaxation-time (MRT) collision operator is proposed for incompressible miscible flow with a large viscosity ratio as well as a high Péclet number in this paper. The equilibria in the present model are motivated by the lattice kinetic scheme previously developed by Inamuro et al. [Philos. Trans. R. Soc. London, Ser. A 360, 477 (2002), 10.1098/rsta.2001.0942]. The fluid viscosity and diffusion coefficient depend on both the corresponding relaxation times and additional adjustable parameters in this model. As a result, the corresponding relaxation times can be adjusted in proper ranges to enhance the performance of the model. Numerical validations of the Poiseuille flow and a diffusion-reaction problem demonstrate that the proposed model has second-order accuracy in space. Thereafter, the model is used to simulate flow through a porous medium, and the results show that the proposed model has the advantage to obtain a viscosity-independent permeability, which makes it a robust method for simulating flow in porous media. Finally, a set of simulations are conducted on the viscous miscible displacement between two parallel plates. The results reveal that the present model can be used to simulate, to a high level of accuracy, flows with large viscosity ratios and/or high Péclet numbers. Moreover, the present model is shown to provide superior stability in the limit of high kinematic viscosity. In summary, the numerical results indicate that the present lattice Boltzmann model is an ideal numerical tool for simulating flow with a large viscosity ratio and/or a high Péclet number.

  11. Large field of view multi-resolution experimental measurement of the spatial structure of a high Reynolds number turbulent boundary layer

    NASA Astrophysics Data System (ADS)

    Buchmann, Nicolas A.; Atkinson, Callum; de Silva, Charitha; Gnanamanickam, Ebenezer; Hutchins, Nicholas; Soria, Julio; Marusic, Ivan

    2013-11-01

    A multiple camera, multiple resolution PIV system consisting of nine highe resolution cameras and two dual cavity lasers is used to instantaneously measure a large streamwise, wall-normal field of view (2 δ × 1 . 5 δ), while simultaneously resolving the near-wall flow down to a height of y + ~ 3 at Reynolds numbers of Re τ ~ 8, 000 to 30, 000. The high spatial resolution in the near-wall vicinity enables direct estimation of the wall shear stress and allows for subsequent and conditional analysis of both the near-wall and larger outer flow structures and fluctuations. The quality of this measurement is assessed via statistical comparison with previous measurements made using hot-wire anemometry and compared with the highest available Reynolds number DNS. Conditional two-point correlations, and conditional mean structures will be presented.

  12. Large-scale assessment of activity landscape feature probabilities of bioactive compounds.

    PubMed

    Kayastha, Shilva; Dimova, Dilyana; Iyer, Preeti; Vogt, Martin; Bajorath, Jürgen

    2014-02-24

    Activity landscape representations integrate pairwise compound similarity and potency relationships and provide direct access to characteristic structure-activity relationship features in compound data sets. Because pairwise compound comparisons provide the foundation of activity landscape design, the assessment of specific landscape features such as activity cliffs has generally been confined to the level of compound pairs. A conditional probability-based approach has been applied herein to assign most probable activity landscape features to individual compounds. For example, for a given data set compound, it was determined if it would preferentially engage in the formation of activity cliffs or other landscape features. In a large-scale effort, we have determined conditional activity landscape feature probabilities for more than 160,000 compounds with well-defined activity annotations contained in 427 different target-based data sets. These landscape feature probabilities provide a detailed view of how different activity landscape features are distributed over currently available bioactive compounds.

  13. Rayleigh- and Prandtl-number dependence of the large-scale flow-structure in weakly-rotating turbulent thermal convection

    NASA Astrophysics Data System (ADS)

    Weiss, Stephan; Wei, Ping; Ahlers, Guenter

    2015-11-01

    Turbulent thermal convection under rotation shows a remarkable variety of different flow states. The Nusselt number (Nu) at slow rotation rates (expressed as the dimensionless inverse Rossby number 1/Ro), for example, is not a monotonic function of 1/Ro. Different 1/Ro-ranges can be observed with different slopes ∂Nu / ∂ (1 / Ro) . Some of these ranges are connected by sharp transitions where ∂Nu / ∂ (1 / Ro) changes discontinuously. We investigate different regimes in cylindrical samples of aspect ratio Γ = 1 by measuring temperatures at the sidewall of the sample for various Prandtl numbers in the range 3 < Pr < 35 and Rayleigh numbers in the range of 108 < Ra < 4 ×1011 . From these measurements we deduce changes of the flow structure. We learn about the stability and dynamics of the large-scale circulation (LSC), as well as about its breakdown and the onset of vortex formation close to the top and bottom plate. We shall examine correlations between these measurements and changes in the heat transport. This work was supported by NSF grant DRM11-58514. SW acknowledges support by the Deutsche Forschungsgemeinschaft.

  14. Random numbers free analytical implementation of Monte Carlo for laser-Doppler flowmetry at large interoptode spacing: application to human bone tissue.

    PubMed

    Binzoni, Tiziano; Martelli, Fabrizio

    2015-03-20

    Classical Monte Carlo (MC) simulations for laser-Doppler flowmetry (LDF) often necessitate too long computation times and specialized hardware. This is particularly true for LDF at large interoptode spacing with low absorption coefficients and large anisotropic factors representing real biological tissues. For this reason, a random numbers free "analytical" implementation of the classical MC (MCan) is proposed. The MCan approach allows to obtain noise exempt LDF spectra in a short time and with a simple personal laptop. The proposed MCan holds for a diffusive regime of light propagation and it is practically implemented for a semi-infinite geometry. Its validity is demonstrated by comparisons with the classical MC.

  15. ProReg XL Tool: an easy-to-use computer tool suite for rapidly regrouping a large number of identical electrophoretic profiles.

    PubMed

    Massias, Bastien; Urdaci, Maria C

    2009-05-01

    The ProReg XL Tool (Profile Regrouping Excel Tool) is a new tool suite designed to rapidly regroup a large number of identical electrophoretic profiles. This tool suite is coded in Visual Basic Application for Microsoft Excel, and thus requires this spreadsheet software to operate. It was designed for use with a new screening strategy of clones from an rrs (16S rDNA) clone library, but it may also be helpful in other electrophoretic applications. ProReg XL Tool is organized in different steps where the user has the capability--in addition to regrouping electrophoretic profiles--to control gel quality, determine signal attenuation, and draw pie charts.

  16. Lessons learned with the Active Phasing Experiment: comparison of four optical phasing sensors on a segmented Very Large Telescope

    NASA Astrophysics Data System (ADS)

    Gonte, F.; Surdej, I.

    The adaptive optics capabilities are strongly limited by the quality of the phasing of the primary mirror of the extremely large telescope. Up to date, the Keck telescopes are the only segmented telescope phased with a quality enabling the application of adaptive optics. The Active Phasing Experiment has been installed at the Namyth focus of the Very Large Telescope Melipal during the last 6 months. Its purpose is to understand and compare different technological concepts for an optical phasing sensor dedicated to the European Extremely Large Telescope. The pupil of the telescope is segmented in 61 hexagonal segments by projecting it on an Active Segmented Mirror. The ASM is controlled by a dual wavenlength interferometer made by Fogale Nanotech with a nanometric precision. The segmented pupil is distributed in parallel to four optical phasing sensors. They are a pyramid sensor, a curvature sensor, a phase filtering sensor and a ShackHartmann sensor. They have been developed respectively by Istituto Nazionale di Astrofisica in Florenze, Instituto Astrofisica Canarias in Tenerife, Laboratoire d'Astrophysique de Marseille and ESO. The global behaviour of the optical phasing sensors will be described and preliminary results of the Active Phasing Experiments obtained on sky will be explained. The extrapolation of the results to the EELT and the potential consequences for the adaptive optics will be given. The Active Phasing Experiment has been financed by the European Union and the European Southern Observatory via the Sixth European Union Framework Program for Research and Technological Development under the contract number 011863.

  17. Numbers, Counting, and Infinity in Middle Schools.

    ERIC Educational Resources Information Center

    Meconi, L. J.

    1992-01-01

    Discusses the use of middle-school students' natural understanding of large numbers to introduce the concept of infinity. Presents activities that investigate infinite sets by demonstrating a one-to-one correspondence between the counting numbers and the given set. Examples include prime numbers, Fibonacci numbers, fractions, even and odd numbers,…

  18. 78 FR 2415 - Agency Information Collection Activities: Application for Family Unity Benefits, Form Number I...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-11

    ... for Family Unity Benefits, Form Number I-817; Revision of a Currently Approved Collection ACTION: 30... approved information. (2) Title of the Form/Collection: Application for Family Unity Benefits. (3)...

  19. 77 FR 71432 - Agency Information Collection Activities: Application for Travel Document, Form Number I-131...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-30

    ... need to travel outside of the United States based on humanitarian, employment or education reasons will... humanitarian, educational and employment reasons. (5) An estimate of the total number of respondents and...

  20. 75 FR 13771 - Agency Information Collection Activities: File Number OMB 22; Extension of an Existing...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-23

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  1. Synergistic transcriptional enhancement does not depend on the number of acidic activation domains bound to the promoter.

    PubMed Central

    Oliviero, S; Struhl, K

    1991-01-01

    Many eukaryotic transcriptional activator proteins contain a DNA-binding domain that interacts with specific promoter sequences and an acidic activation region that is required to stimulate transcription. Transcriptional enhancement by such activator proteins is often synergistic and promiscuous; promoters containing multiple binding sites for an individual protein or even for unrelated proteins can be 10-100 times more active than promoters with single sites. It has been suggested that such synergy reflects a nonlinear response of the basic transcription machinery to the number and/or quality of acidic activation regions. Here, we determine the transcriptional activity of Jun-Fos heterodimers containing one or two GCN4 acidic activation regions on promoters containing one or two Ap-1 target sites. Surprisingly, heterodimers with one or two acidic regions activate transcription with similar efficiency and are equally synergistic (10- to 15-fold) on promoters containing two target sites. Thus, transcriptional synergy does not depend on the number of acidic activation regions but rather on the number of proteins bound to the promoter. This suggests that synergy is mediated either by cooperative DNA binding or by alternative mechanisms in which the DNA-binding domain plays a more direct role in transcription (e.g., changes in DNA structure, nucleosome displacement, or direct interactions with the transcriptional machinery). Images PMID:1898773

  2. Solar and geomagnetic effects on the frequency of atmospheric circulation types over Europe: an analysis based on a large number of classifications

    NASA Astrophysics Data System (ADS)

    Huth, Radan; Cahynová, Monika; Kyselý, Jan

    2010-05-01

    Recently, effects of the 11-year solar cycle on various aspects of tropospheric circulation in the Northern Hemisphere in winter have been recognized. One of our previous studies showed a significant solar effect on the frequency of synoptic types from the Hess-Brezowsky catalogue. Here, we use a large collection of varied classifications of circulation patterns, assembled within the COST733 Action "Harmonization and Applications of Weather Types Classifications for European Regions" to detect the solar effect on the frequency of synoptic types. The collection contains both objective and subjective classifications. The advantage of this multi-classification approach is that peculiarities or biases of any single classification (catalogue) that might influence the detected solar signal vanish once a large ensemble of classifications is used. We divide winter months (December to March) into three groups according to the mean monthly solar activity, quantified by the F10.7 flux. The three groups correspond to the minima of the 11-year solar cycle, a moderate solar activity, and solar maxima. Within each group, frequencies of occurrence of individual circulation types are calculated. Differences in the occurrence of individual classes between solar activity groups indicate the presence of a solar activity effect on atmospheric circulation over Europe. Statistical significance of these differences is estimated by a block resampling method. The research is supported by the Grant Agency of the Czech Academy of Sciences, project A300420805, and by the Ministry of Education, Youth, and Sports of the Czech Republic, contract OC115.

  3. Structural-optical integrated analysis on the large aperture mirror with active mounting

    NASA Astrophysics Data System (ADS)

    Ren, Zhiyuan; Zhu, Jianqiang; Liu, Zhigang

    2016-11-01

    Deformation of the large aperture mirror caused by the external environment load seriously affects the optical performance of the optical system, and there is a limit to develop the shape quality of large aperture mirror with traditional mounting method. It is effective way to reduce the optical mirror distortion with active support method, and the structural-optical integrated method is the effective means to assess the merits of the mounting for large aperture mirror. Firstly, we proposes a new support scheme that uses specific boundary constraints on the large lens edges and imposes flexible torque to resist deformation induced by gravity to improve surface quantity of large aperture mirror. We calculate distortion of the large aperture mirror at the edges of the flexible torque respectively with the finite element method; secondly, we extract distortion value within clear aperture of the mirror with MATLAB, solve the corresponding Zernike polynomial coefficients; lastly, we obtain the peak-valley value (PV) and root mean square value (RMS) with optical-structural integrated analysis . The results for the 690x400x100mm mirror show that PV and RMS values within the clear aperture with 0.4MPa torques than the case without applying a flexible torque reduces 82.7% and 72.9% respectively. The active mounting on the edge of the large aperture mirror can greatly improve the surface quality of the large aperture mirror.

  4. Taking large-eddy simulation of wall-bounded flows to higher Reynolds numbers by use of anisotropy-resolving subgrid models

    NASA Astrophysics Data System (ADS)

    Montecchia, Matteo; Brethouwer, Geert; Johansson, Arne V.; Wallin, Stefan

    2017-03-01

    Properly resolved large-eddy simulations of wall-bounded high Reynolds number flows using standard subgrid-scale (SGS) models requires high spatial and temporal resolution. We have shown that a more elaborate SGS model taking into account the SGS Reynolds stress anisotropies can relax the requirement for the number of grid points by at least an order of magnitude for the same accuracy. This was shown by applying the recently developed explicit algebraic subgrid-scale model (EAM) [Marstorp et al., J. Fluid Mech. 639, 403 (2009), 10.1017/S0022112009991054] to fully developed high Reynolds number channel flows with friction Reynolds numbers of 550, 2000, and 5200. The near-wall region is fully resolved, i.e., no explicit wall modeling or wall functions are applied. A dynamic procedure adjusts the model at the wall for both low and high Reynolds numbers. The resolution is reduced, from the typically recommended 50 and 15 wall units in the stream- and spanwise directions respectively, by up to a factor of 5 in each direction. It was shown by comparison with direct numerical simulations that the EAM is much less sensitive to reduced resolution than the dynamic Smagorinsky model. Skin friction coefficients, mean flow profiles, and Reynolds stresses are better predicted by the EAM for a given resolution. Even the notorious overprediction of the streamwise fluctuation intensity typically seen in poorly resolved LES is significantly reduced when EAM is used on coarse grids. The improved prediction is due to the capability of the EAM to capture the SGS anisotropy, which becomes significant close to the wall.

  5. SU-E-T-230: Creating a Large Number of Focused Beams with Variable Patient Head Tilt to Improve Dose Fall-Off for Brain Radiosurgery

    SciTech Connect

    Chiu, J; Ma, L

    2015-06-15

    Purpose: To develop a treatment delivery and planning strategy by increasing the number of beams to minimize dose to brain tissue surrounding a target, while maximizing dose coverage to the target. Methods: We analyzed 14 different treatment plans via Leksell PFX and 4C. For standardization, single tumor cases were chosen. Original treatment plans were compared with two optimized plans. The number of beams was increased in treatment plans by varying tilt angles of the patient head, while maintaining original isocenter and the beam positions in the x-, y- and z-axes, collimator size, and beam blocking. PFX optimized plans increased beam numbers with three pre-set tilt angles, 70, 90, 110, and 4C optimized plans increased beam numbers with tilt angles increasing arbitrarily from range of 30 to 150 degrees. Optimized treatment plans were compared dosimetrically with original treatment plans. Results: Comparing total normal tissue isodose volumes between original and optimized plans, the low-level percentage isodose volumes decreased in all plans. Despite the addition of multiple beams up to a factor of 25, beam-on times for 1 tilt angle versus 3 or more tilt angles were comparable (<1 min.). In 64% (9/14) of the studied cases, the volume percentage decrease by >5%, with the highest value reaching 19%. The addition of more tilt angles correlates to a greater decrease in normal brain irradiated volume. Selectivity and coverage for original and optimized plans remained comparable. Conclusion: Adding large number of additional focused beams with variable patient head tilt shows improvement for dose fall-off for brain radiosurgery. The study demonstrates technical feasibility of adding beams to decrease target volume.

  6. Determination of the Absolute Number of Cytokine mRNA Molecules within Individual Activated Human T Cells

    NASA Technical Reports Server (NTRS)

    Karr, Laurel J.; Marshall, Gwen; Hockett, Richard D.; Bucy, R. Pat; Curreri, Peter A. (Technical Monitor)

    2002-01-01

    A primary function of activated T cells is the expression and subsequent secretion of cytokines, which orchestrate the differentiation of other lymphocytes, modulate antigen presenting cell activity, and alter vascular endothelium to mediate an immune response. Since many features of immune regulation probably result from modest alterations of endogenous rates of multiple interacting processes, quantitative analysis of the frequency and specific activity of individual T cells is critically important. Using a coordinated set of quantitative methods, the absolute number of molecules of several key cytokine mRNA species in individual T cells has been determined. The frequency of human blood T cells activated in vitro by mitogens and recall protein antigens was determined by intracellular cytokine protein staining, in situ hybridization for cytokine mRNA, and by limiting dilution analysis for cytokine mRNA+ cells. The absolute number of mRNA molecules was simultaneously determined in both homogenates of the entire population of cells and in individual cells obtained by limiting dilution, using a quantitative, competitive RT-PCR assay. The absolute numbers of mRNA molecules in a population of cells divided by the frequency of individual positive cells, yielded essentially the same number of mRNA molecules per cell as direct analysis of individual cells by limiting dilution analysis. Mean numbers of mRNA per positive cell from both mitogen and antigen activated T cells, using these stimulation conditions, were 6000 for IL-2, 6300 for IFN-gamma, and 1600 for IL-4.

  7. Minimizing DNA microarrays to a single molecule per spot: using zero-mode waveguide technology to obtain kinetic data for a large number of short oligonucleotide hybridization reactions

    NASA Astrophysics Data System (ADS)

    Sobek, Jens; Rehrauer, Hubert; Kuhn, Gerrit; Schlapbach, Ralph

    2016-03-01

    We have shown recently that the hybridization of short oligonucleotides can be studied in a zero-mode waveguide nanostructure (ZMW) chip using a modified DNA sequencer.[1] Here we present an extension of this method enabling the parallel measurement of kinetic constants of a large number of hybridization reactions on a single chip. This can be achieved by immobilization of a mixture of oligonucleotides, which leads to a statistical and random distribution of single molecules in the 150'000 ZMWs of a SMRT™ cell. This setup is comparable to a classical microarray with ZMWs in place of spots but unknown allocation of probes. The probe surface density is reduced by a factor of ~1010 allowing the study of hybridization in the absence of interactions with neighboring probes. Hybridization with a dye labelled oligonucleotide results in trains of fluorescence pulses from which interpulse durations (IPDs) and pulse widths (PWs) can be extracted. Since the identity of a probe in a ZMW is unknown, the immobilized oligonucleotide is sequenced in a subsequent step. After mapping the fluorescence traces to the sequence, the association and dissociation rate constant for each oligonucleotide can be calculated. By selecting suitable probes, the method can be used to determine rate constants of hybridization for a large number of mismatch oligonucleotides in a single measurement and at single-molecule level.

  8. Rapid identification of high particle number emitting on-road vehicles and its application to a large fleet of diesel buses.

    PubMed

    Jayaratne, E R; Morawska, L; Ristovski, Z D; He, C

    2007-07-15

    Pollutant concentrations measured in the exhaust plume of a vehicle may be related to the pollutant emission factor using the CO2 concentration as a measure of the dilution factor. We have used this method for the rapid identification of high particle number (PN) emitting on-road vehicles. The method was validated for PN using a medium-duty vehicle and successfully applied to measurements of PN emissions from a large fleet of on-road diesel buses. The ratio of PN concentration to CO2 concentration, Z, in the exhaust plume was estimated for individual buses. On the average, a bus emitted about 1.5 x 10(9) particles per mg of CO2 emitted. A histogram of the number of buses as a function of Z showed, for the first time, that the PN emissions from diesel buses followed a gamma distribution, with most of the values within a narrow range and a few buses exhibiting relatively large values. It was estimated that roughly 10% and 50% of the PN emissions came from just 2% and 25% of the buses, respectively. A regression analysis showed that there was a positive correlation between Z and age of buses, with the slope of the best line being significantly different from zero. The mean Z value for the pre-Euro buses was significantly greater than each of the values for the Euro I and II buses.

  9. Use of Two-Body Correlated Basis Functions with van der Waals Interaction to Study the Shape-Independent Approximation for a Large Number of Trapped Interacting Bosons

    NASA Astrophysics Data System (ADS)

    Lekala, M. L.; Chakrabarti, B.; Das, T. K.; Rampho, G. J.; Sofianos, S. A.; Adam, R. M.; Haldar, S. K.

    2017-01-01

    We study the ground-state and the low-lying excitations of a trapped Bose gas in an isotropic harmonic potential for very small (˜ 3) to very large (˜ 10^7 ) particle numbers. We use the two-body correlated basis functions and the shape-dependent van der Waals interaction in our many-body calculations. We present an exhaustive study of the effect of inter-atomic correlations and the accuracy of the mean-field equations considering a wide range of particle numbers. We calculate the ground-state energy and the one-body density for different values of the van der Waals parameter C6 . We compare our results with those of the modified Gross-Pitaevskii results, the correlated Hartree hypernetted-chain equations (which also utilize the two-body correlated basis functions), as well as of the diffusion Monte Carlo for hard sphere interactions. We observe the effect of the attractive tail of the van der Waals potential in the calculations of the one-body density over the truly repulsive zero-range potential as used in the Gross-Pitaevskii equation and discuss the finite-size effects. We also present the low-lying collective excitations which are well described by a hydrodynamic model in the large particle limit.

  10. Numerical studies of the effects of neutrally buoyant large particles on turbulent channel flow at the friction Reynolds number up to 395

    NASA Astrophysics Data System (ADS)

    Yu, Zhaosheng; Wang, Yu; Shao, Xueming

    2012-11-01

    A direct-forcing fictitious domain method was employed to perform fully-resolved numerical simulations of turbulent channel flow laden with large neutrally buoyant particles at constant pressure gradients. The effects of the particles on the turbulence (including the fluid-phase average velocity, the root-mean-square (rms) of the velocity fluctuation, the probability density function of the velocity and the vortex structures) at the friction Reynolds number of 180 and 395 were investigated. The results show that the drag-reduction effect caused by the spherical particle at low particle volumes is very small. The presence of particles decreases the maximum rms of streamwise velocity fluctuation near wall via weakening the large-scale streamwise vortices, and on the other hand increases the rms of transverse and spanwise fluctuating velocities in vicinity of the wall via inducing smaller-scale vortices. The effects of the particles on the fluid velocity PDF (probability density function) normalized with the rms velocity are small, irrespective of the particle size, particle volume fraction and Reynolds number. The work was supported by the National Natural Science Foundation of China (Nos. 11072217 and 11132008), the Fundamental Research Funds for the Central Universities, and the Program for New Century Excellent Talents in University.

  11. Evaluation of list-mode ordered subset expectation maximization image reconstruction for pixelated solid-state compton gamma camera with large number of channels

    NASA Astrophysics Data System (ADS)

    Kolstein, M.; De Lorenzo, G.; Chmeissani, M.

    2014-04-01

    The Voxel Imaging PET (VIP) Pathfinder project intends to show the advantages of using pixelated solid-state technology for nuclear medicine applications. It proposes designs for Positron Emission Tomography (PET), Positron Emission Mammography (PEM) and Compton gamma camera detectors with a large number of signal channels (of the order of 106). For Compton camera, especially with a large number of readout channels, image reconstruction presents a big challenge. In this work, results are presented for the List-Mode Ordered Subset Expectation Maximization (LM-OSEM) image reconstruction algorithm on simulated data with the VIP Compton camera design. For the simulation, all realistic contributions to the spatial resolution are taken into account, including the Doppler broadening effect. The results show that even with a straightforward implementation of LM-OSEM, good images can be obtained for the proposed Compton camera design. Results are shown for various phantoms, including extended sources and with a distance between the field of view and the first detector plane equal to 100 mm which corresponds to a realistic nuclear medicine environment.

  12. Mean convergence theorems and weak laws of large numbers for weighted sums of random variables under a condition of weighted integrability

    NASA Astrophysics Data System (ADS)

    Ordóñez Cabrera, Manuel; Volodin, Andrei I.

    2005-05-01

    From the classical notion of uniform integrability of a sequence of random variables, a new concept of integrability (called h-integrability) is introduced for an array of random variables, concerning an array of constantsE We prove that this concept is weaker than other previous related notions of integrability, such as Cesàro uniform integrability [Chandra, Sankhya Ser. A 51 (1989) 309-317], uniform integrability concerning the weights [Ordóñez Cabrera, Collect. Math. 45 (1994) 121-132] and Cesàro [alpha]-integrability [Chandra and Goswami, J. Theoret. ProbabE 16 (2003) 655-669]. Under this condition of integrability and appropriate conditions on the array of weights, mean convergence theorems and weak laws of large numbers for weighted sums of an array of random variables are obtained when the random variables are subject to some special kinds of dependence: (a) rowwise pairwise negative dependence, (b) rowwise pairwise non-positive correlation, (c) when the sequence of random variables in every row is [phi]-mixing. Finally, we consider the general weak law of large numbers in the sense of Gut [Statist. Probab. Lett. 14 (1992) 49-52] under this new condition of integrability for a Banach space setting.

  13. Study of 3-D Dynamic Roughness Effects on Flow Over a NACA 0012 Airfoil Using Large Eddy Simulations at Low Reynolds Numbers

    NASA Astrophysics Data System (ADS)

    Guda, Venkata Subba Sai Satish

    There have been several advancements in the aerospace industry in areas of design such as aerodynamics, designs, controls and propulsion; all aimed at one common goal i.e. increasing efficiency --range and scope of operation with lesser fuel consumption. Several methods of flow control have been tried. Some were successful, some failed and many were termed as impractical. The low Reynolds number regime of 104 - 105 is a very interesting range. Flow physics in this range are quite different than those of higher Reynolds number range. Mid and high altitude UAV's, MAV's, sailplanes, jet engine fan blades, inboard helicopter rotor blades and wind turbine rotors are some of the aerodynamic applications that fall in this range. The current study deals with using dynamic roughness as a means of flow control over a NACA 0012 airfoil at low Reynolds numbers. Dynamic 3-D surface roughness elements on an airfoil placed near the leading edge aim at increasing the efficiency by suppressing the effects of leading edge separation like leading edge stall by delaying or totally eliminating flow separation. A numerical study of the above method has been carried out by means of a Large Eddy Simulation, a mathematical model for turbulence in Computational Fluid Dynamics, owing to the highly unsteady nature of the flow. A user defined function has been developed for the 3-D dynamic roughness element motion. Results from simulations have been compared to those from experimental PIV data. Large eddy simulations have relatively well captured the leading edge stall. For the clean cases, i.e. with the DR not actuated, the LES was able to reproduce experimental results in a reasonable fashion. However DR simulation results show that it fails to reattach the flow and suppress flow separation compared to experiments. Several novel techniques of grid design and hump creation are introduced through this study.

  14. Copy number gain at 12q12-14 may be important in the transformation from follicular lymphoma to diffuse large B cell lymphoma

    PubMed Central

    Hough, R E; Goepel, J R; Alcock, H E; Hancock, B W; Lorigan, P C; Hammond, D W

    2001-01-01

    The purpose of this study was to identify novel areas of genomic copy number change associated with transformation from follicular lymphoma (FL) to diffuse large B cell lymphoma (DLBL). DNA was extracted from tumour cells micro-dissected from paraffin- embedded tissue sections in 24 patients with FL and subsequent transformation to DLBL and 18 patients with de novo DLBL. Tumour DNA was compared to reference DNA using comparative genomic hybridization. Abnormalities common to all 3 groups were gains on chromosomes 4q, 5q, 7q, 11q and X and losses on 3p, 8p and 10q. Copy number changes seen in both transformed and de novo DLBL and not seen in FL were gains on 2p and losses on 1q, 15q and Xq. Gains on 2q, 6p, 7p and 17q and losses on 5p and 8q were specific to transformed DLBL cases. Gain on 12q12-14 was found in 52% of the transformed DLBL cases and was never seen in its follicular counterpart. Patterns of genomic copy number change associated with specific clinical events in NHL have been demonstrated and suggest that gains on 2q, 6p, 7p, 12q and 17q and losses on 5p and 8q may be important in the transformation from low to high-grade disease. © 2001 Cancer Research Campaign http://www.bjcancer.com PMID:11207045

  15. Use of an electronic activity detection system to characterize estrus activity in crossbred beef heifers differing in follicle number

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Increased numbers of antral follicles have been associated with decreased calving day, increased fertility, increased serum estradiol concentrations, increased serum progesterone concentrations, and increased estrus behavior in cattle. In addition, cows with increased fertility have been shown to h...

  16. Ion-kinetic simulations of D-3He gas-filled inertial confinement fusion target implosions with moderate to large Knudsen number

    NASA Astrophysics Data System (ADS)

    Larroche, O.; Rinderknecht, H. G.; Rosenberg, M. J.; Hoffman, N. M.; Atzeni, S.; Petrasso, R. D.; Amendt, P. A.; Séguin, F. H.

    2016-01-01

    Experiments designed to investigate the transition to non-collisional behavior in D3He-gas inertial confinement fusion target implosions display increasingly large discrepancies with respect to simulations by standard hydrodynamics codes as the expected ion mean-free-paths λc increase with respect to the target radius R (i.e., when the Knudsen number NK=λc/R grows). To take properly into account large NK's, multi-ion-species Vlasov-Fokker-Planck computations of the inner gas in the capsules have been performed, for two different values of NK, one moderate and one large. The results, including nuclear yield, reactivity-weighted ion temperatures, nuclear emissivities, and surface brightness, have been compared with the experimental data and with the results of hydrodynamical simulations, some of which include an ad hoc modeling of kinetic effects. The experimental results are quite accurately rendered by the kinetic calculations in the smaller-NK case, much better than by the hydrodynamical calculations. The kinetic effects at play in this case are thus correctly understood. However, in the higher-NK case, the agreement is much worse. The remaining discrepancies are shown to arise from kinetic phenomena (e.g., inter-species diffusion) occurring at the gas-pusher interface, which should be investigated in the future work.

  17. Ion-kinetic simulations of D-3He gas-filled inertial confinement fusion target implosions with moderate to large Knudsen number

    DOE PAGES

    Larroche, O.; Rinderknecht, H. G.; Rosenberg, M. J.; ...

    2016-01-06

    Experiments designed to investigate the transition to non-collisional behavior in D3He-gas inertial confinement fusion target implosions display increasingly large discrepancies with respect to simulations by standard hydrodynamics codes as the expected ion mean-free-paths λc increase with respect to the target radius R (i.e., when the Knudsen number NK = λc/R grows). To take properly into account large NK's, multi-ion-species Vlasov-Fokker-Planck computations of the inner gas in the capsules have been performed, for two different values of NK, one moderate and one large. The results, including nuclear yield, reactivity-weighted ion temperatures, nuclear emissivities, and surface brightness, have been compared with themore » experimental data and with the results of hydrodynamical simulations, some of which include an ad hocmodeling of kinetic effects. The experimental results are quite accurately rendered by the kinetic calculations in the smaller-NK case, much better than by the hydrodynamical calculations. The kinetic effects at play in this case are thus correctly understood. However, in the higher-NK case, the agreement is much worse. Furthermore, the remaining discrepancies are shown to arise from kinetic phenomena (e.g., inter-species diffusion) occurring at the gas-pusher interface, which should be investigated in the future work.« less

  18. Ion-kinetic simulations of D-3He gas-filled inertial confinement fusion target implosions with moderate to large Knudsen number

    SciTech Connect

    Larroche, O.; Rinderknecht, H. G.; Rosenberg, M. J.; Hoffman, N. M.; Atzeni, S.; Petrasso, R. D.; Amendt, P. A.; Seguin, F. H.

    2016-01-06

    Experiments designed to investigate the transition to non-collisional behavior in D3He-gas inertial confinement fusion target implosions display increasingly large discrepancies with respect to simulations by standard hydrodynamics codes as the expected ion mean-free-paths λc increase with respect to the target radius R (i.e., when the Knudsen number NK = λc/R grows). To take properly into account large NK's, multi-ion-species Vlasov-Fokker-Planck computations of the inner gas in the capsules have been performed, for two different values of NK, one moderate and one large. The results, including nuclear yield, reactivity-weighted ion temperatures, nuclear emissivities, and surface brightness, have been compared with the experimental data and with the results of hydrodynamical simulations, some of which include an ad hocmodeling of kinetic effects. The experimental results are quite accurately rendered by the kinetic calculations in the smaller-NK case, much better than by the hydrodynamical calculations. The kinetic effects at play in this case are thus correctly understood. However, in the higher-NK case, the agreement is much worse. Furthermore, the remaining discrepancies are shown to arise from kinetic phenomena (e.g., inter-species diffusion) occurring at the gas-pusher interface, which should be investigated in the future work.

  19. A large-conductance calcium-activated potassium channel in potato (Solanum tuberosum) tuber mitochondria.

    PubMed

    Koszela-Piotrowska, Izabela; Matkovic, Karolina; Szewczyk, Adam; Jarmuszkiewicz, Wieslawa

    2009-11-11

    In the present study, we describe the existence of a novel potassium channel in the plant [potato (Solanum tuberosum) tuber] mitochondrial inner membrane. We found that substances known to modulate large-conductance calcium-activated potassium channel activity influenced the bioenergetics of potato tuber mitochondria. In isolated mitochondria, Ca2+ and NS1619 {1,3-dihydro-1-[2-hydroxy-5-(trifluoromethyl)phenyl]-5-(trifluoromethyl)-2H-ben-zimidazole-2-one; a potassium channel opener} were found to depolarize the mitochondrial membrane potential and to stimulate resting respiration. These effects were blocked by iberiotoxin (a potassium channel inhibitor) in a potassium-dependent manner. Additionally, the electrophysiological properties of the large-conductance potassium channel present in the potato tuber inner mitochondrial membrane are described in a reconstituted system, using planar lipid bilayers. After incorporation in 50/450 mM KCl gradient solutions, we recorded large-conductance potassium channel activity with conductance from 502+/-15 to 615+/-12 pS. The probability of channel opening was increased by Ca2+ and reduced by iberiotoxin. Immunological analysis with antibodies raised against the mammalian plasma-membrane large-conductance Ca2+-dependent K+ channel identified a pore-forming alpha subunit and an auxiliary beta2 subunit of the channel in potato tuber mitochondrial inner membrane. These results suggest that a large-conductance calcium-activated potassium channel similar to that of mammalian mitochondria is present in potato tuber mitochondria.

  20. Large sample neutron activation analysis: a challenge in cultural heritage studies.

    PubMed

    Stamatelatos, Ion E; Tzika, Faidra

    2007-07-01

    Large sample neutron activation analysis compliments and significantly extends the analytical tools available for cultural heritage and authentication studies providing unique applications of non-destructive, multi-element analysis of materials that are too precious to damage for sampling purposes, representative sampling of heterogeneous materials or even analysis of whole objects. In this work, correction factors for neutron self-shielding, gamma-ray attenuation and volume distribution of the activity in large volume samples composed of iron and ceramic material were derived. Moreover, the effect of inhomogeneity on the accuracy of the technique was examined.

  1. Optical Topography of Evoked Brain Activity during Mental Tasks Involving Whole Number Operations

    ERIC Educational Resources Information Center

    Ortiz, Enrique

    2014-01-01

    Students start to memorize arithmetic facts from early elementary school mathematics activities. Their fluency or lack of fluency with these facts could affect their efforts as they carry out mental calculations as adults. This study investigated participants' levels of brain activation and possible reasons for these levels as they solved…

  2. Activity Structure as Scaffolding for Children's Second Language Learning. Sociolinguistic Working Paper Number 100.

    ERIC Educational Resources Information Center

    Ervin-Tripp, Susan M.

    An examination of the play situations in which children are successful in learning second languages was undertaken based on observations that children in foreign language settings learn languages quickly in the process of daily play activities. A wide variety of activities were examined, including play phone conversations, soccer, elastic rope…

  3. Measuring Physical Activity with Pedometers in Older Adults with Intellectual Disability: Reactivity and Number of Days

    ERIC Educational Resources Information Center

    Hilgenkamp, Thessa; Van Wijck, Ruud; Evenhuis, Heleen

    2012-01-01

    The minimum number of days of pedometer monitoring needed to estimate valid average weekly step counts and reactivity was investigated for older adults with intellectual disability. Participants (N = 268) with borderline to severe intellectual disability ages 50 years and older were instructed to wear a pedometer for 14 days. The outcome measure…

  4. Assessment of Animated Self-Directed Learning Activities Modules for Children's Number Sense Development

    ERIC Educational Resources Information Center

    Yang, Der-Ching; Li, Mao-Neng

    2013-01-01

    The purpose of this study was to examine the relative effectiveness of two different learning modes; namely, a computer animation self-directed learning approach and a paper version of the self-directed learning approach, to 5th-graders' number sense development. Two 5th-grade classes, 30 students each, were selected from a public elementary…

  5. 77 FR 65705 - Agency Information Collection Activities: Monthly Report on Naturalization Papers, Form Number N...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-30

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    2012-11-08

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    Federal Register 2010, 2011, 2012, 2013, 2014

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    Federal Register 2010, 2011, 2012, 2013, 2014

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  9. Ages of calderas, large explosive craters and active volcanoes in the Kuril-Kamchatka region, Russia

    NASA Astrophysics Data System (ADS)

    Braitseva, O. A.; Melekestsev, I. V.; Ponomareva, V. V.; Sulerzhitsky, L. D.

    1995-12-01

    The ages of most of calderas, large explosive craters and active volcanoes in the Kuril-Kamchatka region have been determined by extensive geological, geomorphological, tephrochronological and isotopic geochronological studies, including more than 600 14C dates. Eight ‘Krakatoa-type’ and three ‘Hawaiian-type’ calderas and no less than three large explosive craters formed here during the Holocene. Most of the Late Pleistocene Krakatoa-type calderas were established around 30 000 40 000 years ago. The active volcanoes are geologically very young, with maximum ages of about 40 000 50 000 years. The overwhelming majority of recently active volcanic cones originated at the very end of the Late Pleistocene or in the Holocene. These studies show that all Holocene stratovolcanoes in Kamchatka were emplaced in the Holocene only in the Eastern volcanic belt. Periods of synchronous, intensified Holocene volcanic activity occurred within the time intervals of 7500 7800 and 1300 1800 14C years BP.

  10. Aerodynamic Effects of Turbulence Intensity on a Variable-Speed Power-Turbine Blade with Large Incidence and Reynolds Number Variations

    NASA Technical Reports Server (NTRS)

    Flegel, Ashlie Brynn; Giel, Paul W.; Welch, Gerard E.

    2014-01-01

    The effects of inlet turbulence intensity on the aerodynamic performance of a variable speed power turbine blade are examined over large incidence and Reynolds number ranges. Both high and low turbulence studies were conducted in the NASA Glenn Research Center Transonic Turbine Blade Cascade Facility. The purpose of the low inlet turbulence study was to examine the transitional flow effects that are anticipated at cruise Reynolds numbers. The high turbulence study extends this to LPT-relevant turbulence levels while perhaps sacrificing transitional flow effects. Downstream total pressure and exit angle data were acquired for ten incidence angles ranging from +15.8 to 51.0. For each incidence angle, data were obtained at five flow conditions with the exit Reynolds number ranging from 2.12105 to 2.12106 and at a design exit Mach number of 0.72. In order to achieve the lowest Reynolds number, the exit Mach number was reduced to 0.35 due to facility constraints. The inlet turbulence intensity, Tu, was measured using a single-wire hotwire located 0.415 axial-chord upstream of the blade row. The inlet turbulence levels ranged from 0.25 - 0.4 for the low Tu tests and 8- 15 for the high Tu study. Tu measurements were also made farther upstream so that turbulence decay rates could be calculated as needed for computational inlet boundary conditions. Downstream flow field measurements were obtained using a pneumatic five-hole pitchyaw probe located in a survey plane 7 axial chord aft of the blade trailing edge and covering three blade passages. Blade and endwall static pressures were acquired for each flow condition as well. The blade loading data show that the suction surface separation that was evident at many of the low Tu conditions has been eliminated. At the extreme positive and negative incidence angles, the data show substantial differences in the exit flow field. These differences are attributable to both the higher inlet Tu directly and to the thinner inlet endwall

  11. Developing Young Children's Multidigit Number Sense.

    ERIC Educational Resources Information Center

    Diezmann, Carmel M.; English, Lyn D.

    2001-01-01

    This article describes a series of enrichment experiences designed to develop young (ages 5 to 8) gifted children's understanding of large numbers, central to their investigation of space travel. It describes activities designed to teach reading of large numbers and exploring numbers to a thousand and then a million. (Contains ten references.) (DB)

  12. A strategy to synergistically increase the number of active edge sites and the conductivity of MoS2 nanosheets for hydrogen evolution

    NASA Astrophysics Data System (ADS)

    Yu, Hailong; Yu, Xianbo; Chen, Yujin; Zhang, Shen; Gao, Peng; Li, Chunyan

    2015-05-01

    Nanostructured MoS2 is very promising as an electrocatalyst for hydrogen evolution due to a greater number of active edge sites. However, a very large resistance between basal planes decreases the overall efficiency of hydrogen evolution, and greatly limits its application in industry. Herein we develop a facile strategy to synergistically increase the number of active edge sites and the conductivity of MoS2. MoS2 nanosheet arrays can be grown vertically on a carbon fiber cloth (CFC) substrates by a facile strategy. On the one hand, ammonium fluoride in the reaction system could effectively etch the inert basal plane of the MoS2 nanosheets, leading to the formation of pits in the inert basal plane of the MoS2 nanosheets. Thereby the number of active edge sites is significantly increased. On the other hand, the vertical growth of MoS2 nanosheet arrays on CFCs can significantly decrease the resistance of MoS2-based electrocatalysts. As a result, the MoS2-based electrocatalysts exhibit excellent catalytic activity for hydrogen evolution reactions, with a small Tafel slope and a large cathodic current density. Moreover, the CFC can be repeatedly utilized as a template to grow ultrathin MoS2 nanosheet arrays for HERs. The excellent activity and recyclable utilization, as well as mass production, indicate that the composite has promising applications in industry.Nanostructured MoS2 is very promising as an electrocatalyst for hydrogen evolution due to a greater number of active edge sites. However, a very large resistance between basal planes decreases the overall efficiency of hydrogen evolution, and greatly limits its application in industry. Herein we develop a facile strategy to synergistically increase the number of active edge sites and the conductivity of MoS2. MoS2 nanosheet arrays can be grown vertically on a carbon fiber cloth (CFC) substrates by a facile strategy. On the one hand, ammonium fluoride in the reaction system could effectively etch the inert basal

  13. Stirring a fluid at low Reynolds numbers: Hydrodynamic collective effects of active proteins in biological cells

    NASA Astrophysics Data System (ADS)

    Kapral, Raymond; Mikhailov, Alexander S.

    2016-04-01

    Most of the proteins in the cell, including not only molecular motors and machines, but also enzymes, are active. When ATP or other substrates are supplied, these macromolecules cyclically change their conformations. Therefore, they mechanically stir the cytoplasm and nucleoplasm, so that non-thermal fluctuating flows are produced. As we have recently shown (Mikhailov and Kapral, 2015), stochastic advection by such flows might lead to substantial diffusion enhancement of particles inside a living cell. Additionally, when gradients in the concentrations of active particles or in the ATP/substrate supply are present, chemotaxis-like drift should take place. Here, the motion of passive tracers with various sizes in a mixture of different kinds of active proteins is analyzed. Moreover, effects of hydrodynamic interactions on the motion of active proteins are explored. Theoretical results are compared with available experimental data for ATP-dependent diffusion of natural and microinjected particles in biological cells.

  14. Support of an Active Science Project by a Large Information System: Lessons for the EOS Era

    NASA Technical Reports Server (NTRS)

    Angelici, Gary L.; Skiles, J. W.; Popovici, Lidia Z.

    1993-01-01

    The ability of large information systems to support the changing data requirements of active science projects is being tested in a NASA collaborative study. This paper briefly profiles both the active science project and the large information system involved in this effort and offers some observations about the effectiveness of the project support. This is followed by lessons that are important for those participating in large information systems that need to support active science projects or that make available the valuable data produced by these projects. We learned in this work that it is difficult for a large information system focused on long term data management to satisfy the requirements of an on-going science project. For example, in order to provide the best service, it is important for all information system staff to keep focused on the needs and constraints of the scientists in the development of appropriate services. If the lessons learned in this and other science support experiences are not applied by those involved with large information systems of the EOS (Earth Observing System) era, then the final data products produced by future science projects may not be robust or of high quality, thereby making the conduct of the project science less efficacious and reducing the value of these unique suites of data for future research.

  15. A study of the effectiveness of machine learning methods for classification of clinical interview fragments into a large number of categories.

    PubMed

    Hasan, Mehedi; Kotov, Alexander; Idalski Carcone, April; Dong, Ming; Naar, Sylvie; Brogan Hartlieb, Kathryn

    2016-08-01

    This study examines the effectiveness of state-of-the-art supervised machine learning methods in conjunction with different feature types for the task of automatic annotation of fragments of clinical text based on codebooks with a large number of categories. We used a collection of motivational interview transcripts consisting of 11,353 utterances, which were manually annotated by two human coders as the gold standard, and experimented with state-of-art classifiers, including Naïve Bayes, J48 Decision Tree, Support Vector Machine (SVM), Random Forest (RF), AdaBoost, DiscLDA, Conditional Random Fields (CRF) and Convolutional Neural Network (CNN) in conjunction with lexical, contextual (label of the previous utterance) and semantic (distribution of words in the utterance across the Linguistic Inquiry and Word Count dictionaries) features. We found out that, when the number of classes is large, the performance of CNN and CRF is inferior to SVM. When only lexical features were used, interview transcripts were automatically annotated by SVM with the highest classification accuracy among all classifiers of 70.8%, 61% and 53.7% based on the codebooks consisting of 17, 20 and 41 codes, respectively. Using contextual and semantic features, as well as their combination, in addition to lexical ones, improved the accuracy of SVM for annotation of utterances in motivational interview transcripts with a codebook consisting of 17 classes to 71.5%, 74.2%, and 75.1%, respectively. Our results demonstrate the potential of using machine learning methods in conjunction with lexical, semantic and contextual features for automatic annotation of clinical interview transcripts with near-human accuracy.

  16. A rapid and robust sequence-based genotyping method for BoLA-DRB3 alleles in large numbers of heterozygous cattle.

    PubMed

    Baxter, R; Hastings, N; Law, A; Glass, E J

    2008-10-01

    The BoLA-DRB3 gene is a highly polymorphic major histocompatibility complex class II gene of cattle with over one hundred alleles reported. Most of the polymorphisms are located in exon 2, which encodes the peptide-binding cleft, and these sequence differences play a role in variability of immune responsiveness and disease resistance. However, the high degree of polymorphism in exon 2 leads to difficulty in accurately genotyping cattle, especially heterozygous animals. In this study, we have improved and simplified an earlier sequence-based typing method to easily and reliably genotype cattle for BoLA-DRB3. In contrast to the earlier method, which used a nested primer set to amplify exon 2 followed by sequencing with internal primers, the new method uses only internal primers for both amplification and sequencing, which results in high-quality sequence across the entire exon. The haplofinder software, which assigns alleles from the heterozygous sequence, now has a pre-processing step that uses a consensus of all known alleles and checks for errors in base calling, thus improving the ability to process large numbers of samples. In addition, advances in sequencing technology have reduced the requirement for manual editing and improved the clarity of heterozygous base calls, resulting in longer and clearer sequence reads. Taken together, this has resulted in a rapid and robust method for genotyping large numbers of heterozygous samples for BoLA-DRB3 polymorphisms. Over 400 Holstein-Charolais cattle have now been genotyped for BoLA-DRB3 using this approach.

  17. Implementation and Evaluation of a Values Clarification Activity for a Large Undergraduate Human Sexuality Course

    ERIC Educational Resources Information Center

    Lederer, Alyssa M.

    2016-01-01

    Values clarification is an important tool that helps individuals to clarify their beliefs about sexuality-related issues. This lesson plan provides instructions for a 1-hour values clarification activity for a large undergraduate human sexuality course that serves as an introduction to course content and tone, stimulates students' initial thinking…

  18. A Simple and Effective Protein Folding Activity Suitable for Large Lectures

    ERIC Educational Resources Information Center

    White, Brian

    2006-01-01

    This article describes a simple and inexpensive hands-on simulation of protein folding suitable for use in large lecture classes. This activity uses a minimum of parts, tools, and skill to simulate some of the fundamental principles of protein folding. The major concepts targeted are that proteins begin as linear polypeptides and fold to…

  19. Active Learning in a Large Medical Classroom Setting for Teaching Renal Physiology

    ERIC Educational Resources Information Center

    Dietz, John R.; Stevenson, Frazier T.

    2011-01-01

    In this article, the authors describe an active learning exercise which has been used to replace some lecture hours in the renal portion of an integrated, organ system-based curriculum for first-year medical students. The exercise takes place in a large auditorium with ~150 students. The authors, who are faculty members, lead the discussions,…

  20. Chronic, Wireless Recordings of Large Scale Brain Activity in Freely Moving Rhesus Monkeys

    PubMed Central

    Schwarz, David A.; Lebedev, Mikhail A.; Hanson, Timothy L.; Dimitrov, Dragan F.; Lehew, Gary; Meloy, Jim; Rajangam, Sankaranarayani; Subramanian, Vivek; Ifft, Peter J.; Li, Zheng; Ramakrishnan, Arjun; Tate, Andrew; Zhuang, Katie; Nicolelis, Miguel A.L.

    2014-01-01

    Advances in techniques for recording large-scale brain activity contribute to both the elucidation of neurophysiological principles and the development of brain-machine interfaces (BMIs). Here we describe a neurophysiological paradigm for performing tethered and wireless large-scale recordings based on movable volumetric three-dimensional (3D) multielectrode implants. This approach allowed us to isolate up to 1,800 units per animal and simultaneously record the extracellular activity of close to 500 cortical neurons, distributed across multiple cortical areas, in freely behaving rhesus monkeys. The method is expandable, in principle, to thousands of simultaneously recorded channels. It also allows increased recording longevity (5 consecutive years), and recording of a broad range of behaviors, e.g. social interactions, and BMI paradigms in freely moving primates. We propose that wireless large-scale recordings could have a profound impact on basic primate neurophysiology research, while providing a framework for the development and testing of clinically relevant neuroprostheses. PMID:24776634

  1. You can count on the motor cortex: Finger counting habits modulate motor cortex activation evoked by numbers

    PubMed Central

    Tschentscher, Nadja; Hauk, Olaf; Fischer, Martin H.; Pulvermüller, Friedemann

    2012-01-01

    The embodied cognition framework suggests that neural systems for perception and action are engaged during higher cognitive processes. In an event-related fMRI study, we tested this claim for the abstract domain of numerical symbol processing: is the human cortical motor system part of the representation of numbers, and is organization of numerical knowledge influenced by individual finger counting habits? Developmental studies suggest a link between numerals and finger counting habits due to the acquisition of numerical skills through finger counting in childhood. In the present study, digits 1 to 9 and the corresponding number words were presented visually to adults with different finger counting habits, i.e. left- and right-starters who reported that they usually start counting small numbers with their left and right hand, respectively. Despite the absence of overt hand movements, the hemisphere contralateral to the hand used for counting small numbers was activated when small numbers were presented. The correspondence between finger counting habits and hemispheric motor activation is consistent with an intrinsic functional link between finger counting and number processing. PMID:22133748

  2. Genome-wide study refines the quantitative trait locus for number of ribs in a Large White × Minzhu intercross pig population and reveals a new candidate gene.

    PubMed

    Zhang, Long-Chao; Yue, Jing-Wei; Pu, Lei; Wang, Li-Gang; Liu, Xin; Liang, Jing; Yan, Hua; Zhao, Ke-Bin; Li, Na; Shi, Hui-Bi; Zhang, Yue-Bo; Wang, Li-Xian

    2016-10-01

    In China, sparerib is one of the most valuable parts of the pork carcass. As a result, candidate gene mining for number of ribs has become an interesting study focus. To examine the genetic basis for this major trait, we genotyped 596 individuals from an F2 Large White × Minzhu intercross pig population using the PorcineSNP60 Genotyping BeadChip. The genome-wide association study identified a locus for number of ribs in a 2.38-Mb region on Sus scrofa chromosome 7 (SSC7 of Sus scrofa genome assembly, Sscrofa10.2). We identified the top significant SNP ASGA0035536, which explained 16.51 % of the phenotypic variance. A previously reported candidate causal mutation (g.19034 A>C) in vertebrae development-associated gene VRTN explained 8.79 % of the phenotypic variation on number of ribs and had a much lower effect than ASGA0035536. Haplotype sharing analysis in F1 boars localized the rib number QTL to a 951-kb interval on SSC7. This interval encompassed 17 annotated genes in Sscrofa10.2, including the previously reported VRTN candidate gene. Of the 17 candidate genes, LTBP2, which encodes a latent transforming growth factor beta binding protein, was previously reported to indirectly regulate the activity of growth differentiation factor Gdf11, which has been shown to increase the number of ribs in knock-out mice. Thus, we propose LTBP2 as a good new candidate gene for number of ribs in the pig population. This finding advances our understanding of the genetic architecture of rib number in pigs.

  3. Change in number and size of circulating tumor cells with high telomerase activity during treatment of patients with gastric cancer

    PubMed Central

    Ito, Hiroaki; Yamaguchi, Noriko; Onimaru, Manabu; Kimura, Satoshi; Ohmori, Tohru; Ishikawa, Fumihiro; Sato, Jun; Ito, Shun; Inoue, Haruhiro

    2016-01-01

    Detection of circulating tumor cells (CTCs) in peripheral blood is useful for estimating the prognosis of patients with cancer. We previously reported the detection of CTCs by OBP-401, a telomerase-specific, replication-selective, oncolytic adenoviral agent carrying the green fluorescent protein (GFP) gene. We demonstrated that the number of large (L)-GFP+ cells (≥7.735 µm in diameter) in peripheral blood samples correlated significantly with the prognosis of treatment-naïve gastric cancer patients, whereas the number of small (S)-GFP+ cells (<7.735 µm in diameter) did not. In the present study, we studied the change in the number of GFP+ cells during treatment, and analyzed the association between the number of GFP+ cells in blood samples and the outcome of patients. Peripheral blood samples were obtained from 37 gastric patients prior and subsequent to surgery (three samples per time point). Upon infection of blood cells with OBP-401, GFP+ cells of different sizes were counted and measured. The association between the number of GFP+ cells and surgical outcome was determined by statistical analysis. The median follow-up period after surgery was 39 months. Although the difference was not significant, patients with ≥6 L-GFP+ cells in preoperative blood samples had a lower relapse-free survival rate than patients with 0–5 L-GFP+ cells. There was no significant correlation between the number of L-GFP+ cells in postoperative blood samples and the prognosis of patients receiving adjuvant therapy. Although the difference was not significant, the number of S-GFP+ cells in samples from patients who had received postoperative chemotherapy was higher than in those who had not. The number of L-GFP+ cells was not significantly correlated with the relapse-free survival rate in gastric cancer patients who underwent surgery. The number of S-GFP+ cells was relatively high in samples from patients who had received postoperative chemotherapy. PMID:28105179

  4. An experimental study of the flow pattern and heat transport behavior in horizontal convection with large Rayleigh number and small aspect ratio

    NASA Astrophysics Data System (ADS)

    Xia, Ke-Qing; Huang, Shi-Di

    2014-11-01

    Horizontal convection is a simple conceptual model to understand the role of buoyancy in the Meridional Overturning Circulation (MOC). Here we report an experimental study of the flow pattern and heat transport behavior in horizontal convection with Rayleigh number Ra up to 2 ×1012 and aspect ratio of 0.1 using a long apparatus. Flow visualization studies reveal that it is not necessary for the returning flow to penetrate the strong stratification in the thermal BLs, suggesting that much less energy may be required to maintain a global circulation than is generally believed. Moreover, both the heat transport efficiency and thermal BL thicknesses are found to follow a 0.3 power law, which indicates a stronger heat transport in horizontal convection with large Ra number than is suggested in the literature. These findings on horizontal convection may be relevant to the driving mechanism of the MOC. This work is supported by the Hong Kong Research Grants Council under Grant No. CUHK403811.

  5. Proteomic analysis of salinity-stressed Chlamydomonas reinhardtii revealed differential suppression and induction of a large number of important housekeeping proteins.

    PubMed

    Yokthongwattana, Chotika; Mahong, Bancha; Roytrakul, Sittiruk; Phaonaklop, Narumon; Narangajavana, Jarunya; Yokthongwattana, Kittisak

    2012-03-01

    Salinity stress is one of the most common abiotic stresses that hamper plant productivity worldwide. Successful plant adaptations to salt stress require substantial changes in cellular protein expression. In this work, we present a 2-DE-based proteomic analysis of a model unicellular green alga, Chlamydomonas reinhardtii, subjected to 300 mM NaCl for 2 h. Results showed that, in addition to the protein spots that showed partial up- or down-regulation patterns, a number of proteins were exclusively present in the proteome of the control cells, but were absent from the salinity-stressed samples. Conversely, a large number of proteins exclusively appeared in the proteome of the salinity-stressed samples. Of those exclusive proteins, we could successfully identify, via LC-MS/MS, 18 spots uniquely present in the control cells and 99 spots specific to NaCl-treated cells. Interestingly, among the salt-exclusive protein spots, we identified several important housekeeping proteins like molecular chaperones and proteins of the translation machinery, suggesting that they may originate from post-translational modifications rather than from de novo biosynthesis. The possible role and the salt-specific modification of these proteins by salinity stress are discussed.

  6. Restricted active space spin-flip configuration interaction: theory and examples for multiple spin flips with odd numbers of electrons.

    PubMed

    Zimmerman, Paul M; Bell, Franziska; Goldey, Matthew; Bell, Alexis T; Head-Gordon, Martin

    2012-10-28

    The restricted active space spin flip (RAS-SF) method is extended to allow ground and excited states of molecular radicals to be described at low cost (for small numbers of spin flips). RAS-SF allows for any number of spin flips and a flexible active space while maintaining pure spin eigenfunctions for all states by maintaining a spin complete set of determinants and using spin-restricted orbitals. The implementation supports both even and odd numbers of electrons, while use of resolution of the identity integrals and a shared memory parallel implementation allow for fast computation. Examples of multiple-bond dissociation, excited states in triradicals, spin conversions in organic multi-radicals, and mixed-valence metal coordination complexes demonstrate the broad usefulness of RAS-SF.

  7. HerMES: a search for high-redshift dusty galaxies in the HerMES Large Mode Survey - catalogue, number counts and early results

    NASA Astrophysics Data System (ADS)

    Asboth, V.; Conley, A.; Sayers, J.; Béthermin, M.; Chapman, S. C.; Clements, D. L.; Cooray, A.; Dannerbauer, H.; Farrah, D.; Glenn, J.; Golwala, S. R.; Halpern, M.; Ibar, E.; Ivison, R. J.; Maloney, P. R.; Marques-Chaves, R.; Martinez-Navajas, P. I.; Oliver, S. J.; Pérez-Fournon, I.; Riechers, D. A.; Rowan-Robinson, M.; Scott, Douglas; Siegel, S. R.; Vieira, J. D.; Viero, M.; Wang, L.; Wardlow, J.; Wheeler, J.

    2016-10-01

    Selecting sources with rising flux densities towards longer wavelengths from Herschel/Spectral and Photometric Imaging Receiver (SPIRE) maps is an efficient way to produce a catalogue rich in high-redshift (z > 4) dusty star-forming galaxies. The effectiveness of this approach has already been confirmed by spectroscopic follow-up observations, but the previously available catalogues made this way are limited by small survey areas. Here we apply a map-based search method to 274 deg2 of the Herschel Multi-tiered Extragalactic Survey (HerMES) Large Mode Survey and create a catalogue of 477 objects with SPIRE flux densities S500 > S350 > S250 and a 5σ cut-off S500 > 52 mJy. From this catalogue we determine that the total number of these `red' sources is at least an order of magnitude higher than predicted by galaxy evolution models. These results are in agreement with previous findings in smaller HerMES fields; however, due to our significantly larger sample size we are also able to investigate the shape of the red source counts for the first time. We have obtained spectroscopic redshift measurements for two of our sources using the Atacama Large Millimeter/submillimeter Array. The redshifts z = 5.1 and 3.8 confirm that with our selection method we can indeed find high-redshift dusty star-forming galaxies.

  8. Numerical studies on the dynamics of two-layer Rayleigh-Bénard convection with an infinite Prandtl number and large viscosity contrasts

    NASA Astrophysics Data System (ADS)

    Yoshida, Masaki; Hamano, Yozo

    2016-11-01

    The fundamental physics and dynamics relating to two-layer convection with an infinite Prandtl number and large viscosity contrasts have not yet been quantitatively resolved by previous numerical analyses or simulations and laboratory experiments. Here, a series of high-resolution numerical simulations of Rayleigh-Bénard convection with a highly viscous outer layer (HVL) and a low-viscosity inner layer (LVL) in 2-D spherical-shell geometry were performed to investigate the dynamics of convection between the two layers with large viscosity contrasts of up to 103. To achieve a two-layer thermal convection system considering a thermally and mechanically continuous interface between the two layers without any specified boundary conditions, an "effective thermal expansion coefficient" was introduced to the buoyancy term of the momentum equation, discretized in a finite-volume-based regular grid system. In this study, the heat transport efficiency of two-layer convection was evaluated, and the coupling modes between the two layers were directly analyzed using the temperature anomaly and deviatoric stress fields near the interface. Results show that the mechanical coupling mode is dominant in two-layer convection when the absolute viscosity contrast between the two layers is sufficiently small, and it weakens, becoming closer to the thermal coupling mode, as the LVL viscosity decreases. This transition from the mechanical coupling to the thermal coupling modes is quantitatively detected even when the viscosity contrast between the two layers is 10-3, and results in the stabilizing of the convection speed and the heat transport efficiency of the HVL. Applying the mantle-outer core coupling of the present Earth with an extremely large absolute viscosity contrast, our numerical results imply that thermal convection in the mantle may control the heat transport efficiency of a layered whole solid-earth system and the convective style in the outer core.

  9. 77 FR 64119 - Agency Information Collection Activities: Refugee/Asylee Adjusting Status, Form Number I-643...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-18

    ... SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: Refugee/Asylee...: 30-Day Notice. SUMMARY: The Department of Homeland Security (DHS), U.S. Citizenship and Immigration... form when applying for adjustment of status, with the U.S. Citizenship and Immigration Services...

  10. Learning Activity Package, Physical Science. LAP Numbers 8, 9, 10, and 11.

    ERIC Educational Resources Information Center

    Williams, G. J.

    These four units of the Learning Activity Packages (LAPs) for individualized instruction in physical science cover nuclear reactions, alpha and beta particles, atomic radiation, medical use of nuclear energy, fission, fusion, simple machines, Newton's laws of motion, electricity, currents, electromagnetism, Oersted's experiment, sound, light,…

  11. Learning Activity Package, Chemistry I. LAP Numbers 22, 23, 24, 25, 26, 27, and 28.

    ERIC Educational Resources Information Center

    Jones, Naomi

    As a set of seven Learning Activity Packages (LAPs) for individualized instruction in chemistry, the units cover the unit system, matter, energy, atomic structures, chemical formulas, physical states of matter, solutions and suspensions, ionization, acids, bases, and salts. Each unit contains a rationale for the material; a list of behavioral…

  12. 77 FR 65702 - Agency Information Collection Activities: Refugee/Asylee Relative Petition, Form Number I-730...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-30

    ... SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: Refugee/Asylee... time required to complete this benefit request. (2) Title of the Form/Collection: Refugee/Asylee... abstract: Primary: Individuals or households. Form I- 730 will be used by an asylee or refugee to file...

  13. Learning Activity Package, Physical Science. LAP Numbers 5, 6, and 7.

    ERIC Educational Resources Information Center

    Williams, G. J.

    These three units of the Learning Activity Packages (LAPs) for individualized instruction in physical science cover the physical and chemical properties of water, dehydration of crystals, solutions, acidity, strong and weak bases, neutral properties of salts, amorphous forms of carbon, hydrocarbons, and petroleum products. Each unit contains a…

  14. 77 FR 65898 - Agency Information Collection Activities: InfoPass System, No Form Number; Extension, Without...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-31

    ... SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: InfoPass...: Extension, Without Change, of a Currently Approved Collection. (2) Title of the Form/Collection: InfoPass... as a brief abstract: Primary: Individuals or households. The InfoPass system allows an applicant...

  15. Active Trusteeship for a Changing Era. New Directions for Community Colleges, Number 51.

    ERIC Educational Resources Information Center

    Petty, Gary Frank, Ed.

    1985-01-01

    Offered as a contribution to developing better trustees, this collection of essays represents a variety of viewpoints on the nature and extent of trustee services. The following articles are included: (1) "The Illinois Public Community College Board Members," by Gary Frank Petty and William E. Piland; (2) "Active Trusteeship for a Changing Era,"…

  16. Visualizing, Rather than Deriving, Russell-Saunders Terms: A Classroom Activity with Quantum Numbers

    ERIC Educational Resources Information Center

    Coppo, Paolo

    2016-01-01

    A 1 h classroom activity is presented, aimed at consolidating the concepts of microstates and Russell-Saunders energy terms in transition metal atoms and coordination complexes. The unconventional approach, based on logic and intuition rather than rigorous mathematics, is designed to stimulate discussion and enhance familiarity with quantum…

  17. Need for Assistance in the Activities of Daily Living. Disability Statistics Abstract, Number 18.

    ERIC Educational Resources Information Center

    Kennedy, Jae; LaPlante, Mitchell P.; Kaye, H. Stephen

    This abstract summarizes recent statistics on those needing assistance in Activities of Daily Living (ADLs), along with participation rates for various proposed benefit programs, based on an analysis of the 1990-91 Survey of Income and Program Participation. Analysis indicates: (1) an estimated 1.9 percent of the population has difficulty…

  18. Process effects on activated carbon with large specific surface area from corn cob.

    PubMed

    Cao, Qing; Xie, Ke-Chang; Lv, Yong-Kang; Bao, Wei-Ren

    2006-01-01

    The main factors that affect the large specific surface area (SSA) of the activated carbon from agricultural waste corn cobs were studied by chemically activated method with solution of KOH and soap which acted as surfactant. The experiment showed that not only the activation temperature, activation time and the mass ratio of KOH to the carbonized material, but also the activated methods using activator obviously influenced the SSA of activated carbon. The experimental operating conditions were as follows: the carbonized temperature being 450 degrees C and keeping time being 4 h using N2 as protective gas; the activation temperature being 850 degrees C and holding time being 1.2 h; the mass ratio of KOH to carbonized material being 4.0; the time of soaking carbonized material in the solution of KOH and soap being 30 min. Under the optimal conditions, the SSA of activated carbon from corn cobs reached 2700 m2/g. And the addition of the soap as surfactant may shorten the soaking time. The structure of the activated carbon prepared had narrow distribution of pore size and the micro-pores accounted for 78%. The advantages of the method described were easy and feasible.

  19. Corticosterone-induced insulin resistance is not associated with alterations of insulin receptor number and kinase activity in chicken kidney.

    PubMed

    Bisbis, S; Taouis, M; Derouet, M; Chevalier, B; Simon, J

    1994-12-01

    Chicken renal insulin receptors have been recently characterized; their number and kinase activities vary in response to altered nutritional status. In the present study, the effect of chronic corticosterone treatment was examined in 5-week-old chickens. The development of an insulin resistance following corticosterone was suggested after 1 and 2 weeks of treatment by a significant increases in plasma insulin levels (1.63 +/- 0.13 vs 0.56 +/- 0.14 ng insulin/ml in controls) and in renal cytosolic phosphoenolpyruvate carboxykinase activity (17.2 +/- 0.8 vs 13.7 +/- 0.7 nm/mn/mg tissue in controls). No significant changes were present at the level of insulin receptor number and kinase activity. Therefore, in kidney and, as previously observed, in muscles, corticosterone can induce insulin resistance at postreceptor steps in the cascade of events leading to insulin action.

  20. Large-scale filament formation inhibits the activity of CTP synthetase.

    PubMed

    Barry, Rachael M; Bitbol, Anne-Florence; Lorestani, Alexander; Charles, Emeric J; Habrian, Chris H; Hansen, Jesse M; Li, Hsin-Jung; Baldwin, Enoch P; Wingreen, Ned S; Kollman, Justin M; Gitai, Zemer

    2014-07-16

    CTP Synthetase (CtpS) is a universally conserved and essential metabolic enzyme. While many enzymes form small oligomers, CtpS forms large-scale filamentous structures of unknown function in prokaryotes and eukaryotes. By simultaneously monitoring CtpS polymerization and enzymatic activity, we show that polymerization inhibits activity, and CtpS's product, CTP, induces assembly. To understand how assembly inhibits activity, we used electron microscopy to define the structure of CtpS polymers. This structure suggests that polymerization sterically hinders a conformational change necessary for CtpS activity. Structure-guided mutagenesis and mathematical modeling further indicate that coupling activity to polymerization promotes cooperative catalytic regulation. This previously uncharacterized regulatory mechanism is important for cellular function since a mutant that disrupts CtpS polymerization disrupts E. coli growth and metabolic regulation without reducing CTP levels. We propose that regulation by large-scale polymerization enables ultrasensitive control of enzymatic activity while storing an enzyme subpopulation in a conformationally restricted form that is readily activatable.

  1. Spontaneous Neuronal Activity in Developing Neocortical Networks: From Single Cells to Large-Scale Interactions

    PubMed Central

    Luhmann, Heiko J.; Sinning, Anne; Yang, Jenq-Wei; Reyes-Puerta, Vicente; Stüttgen, Maik C.; Kirischuk, Sergei; Kilb, Werner

    2016-01-01

    Neuronal activity has been shown to be essential for the proper formation of neuronal circuits, affecting developmental processes like neurogenesis, migration, programmed cell death, cellular differentiation, formation of local and long-range axonal connections, synaptic plasticity or myelination. Accordingly, neocortical areas reveal distinct spontaneous and sensory-driven neuronal activity patterns already at early phases of development. At embryonic stages, when immature neurons start to develop voltage-dependent channels, spontaneous activity is highly synchronized within small neuronal networks and governed by electrical synaptic transmission. Subsequently, spontaneous activity patterns become more complex, involve larger networks and propagate over several neocortical areas. The developmental shift from local to large-scale network activity is accompanied by a gradual shift from electrical to chemical synaptic transmission with an initial excitatory action of chloride-gated channels activated by GABA, glycine and taurine. Transient neuronal populations in the subplate (SP) support temporary circuits that play an important role in tuning early neocortical activity and the formation of mature neuronal networks. Thus, early spontaneous activity patterns control the formation of developing networks in sensory cortices, and disturbances of these activity patterns may lead to long-lasting neuronal deficits. PMID:27252626

  2. Active Control of Combustion Instability in a Ramjet Using Large-Eddy Simulations

    DTIC Science & Technology

    1992-09-01

    INSTABILITY IN A RAMJET USING LARGE-EDDY SIMULATIONS S. Menon N.TIS CR.A,1i ()TiC TAB September 1992 1 , o -d 6 y ... . ... .. Prepared for t.Cft OFFICE OF...pressure oscillations initially show a large-aznplitude, low- frequency oscillatio that eventually decays o that a high-frequency oscillation at around...injec- tion were recently presented (M o ., 199•1) TP-276/02-91 10 4.1 Acsntlc Fedback Cesto l Active control through acoustic forcing was demonstrated

  3. A new robust adaptive controller for vibration control of active engine mount subjected to large uncertainties

    NASA Astrophysics Data System (ADS)

    Fakhari, Vahid; Choi, Seung-Bok; Cho, Chang-Hyun

    2015-04-01

    This work presents a new robust model reference adaptive control (MRAC) for vibration control caused from vehicle engine using an electromagnetic type of active engine mount. Vibration isolation performances of the active mount associated with the robust controller are evaluated in the presence of large uncertainties. As a first step, an active mount with linear solenoid actuator is prepared and its dynamic model is identified via experimental test. Subsequently, a new robust MRAC based on the gradient method with σ-modification is designed by selecting a proper reference model. In designing the robust adaptive control, structured (parametric) uncertainties in the stiffness of the passive part of the mount and in damping ratio of the active part of the mount are considered to investigate the robustness of the proposed controller. Experimental and simulation results are presented to evaluate performance focusing on the robustness behavior of the controller in the face of large uncertainties. The obtained results show that the proposed controller can sufficiently provide the robust vibration control performance even in the presence of large uncertainties showing an effective vibration isolation.

  4. Active Control of Flow Separation on a High-Lift System with Slotted Flap at High Reynolds Number

    NASA Technical Reports Server (NTRS)

    Khodadoust, Abdollah; Washburn, Anthony

    2007-01-01

    The NASA Energy Efficient Transport (EET) airfoil was tested at NASA Langley's Low- Turbulence Pressure Tunnel (LTPT) to assess the effectiveness of distributed Active Flow Control (AFC) concepts on a high-lift system at flight scale Reynolds numbers for a medium-sized transport. The test results indicate presence of strong Reynolds number effects on the high-lift system with the AFC operational, implying the importance of flight-scale testing for implementation of such systems during design of future flight vehicles with AFC. This paper describes the wind tunnel test results obtained at the LTPT for the EET high-lift system for various AFC concepts examined on this airfoil.

  5. QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles.

    PubMed

    Liu, Huanxiang; Papa, Ester; Gramatica, Paola

    2006-11-01

    A large number of environmental chemicals, known as endocrine-disrupting chemicals, are suspected of disrupting endocrine functions by mimicking or antagonizing natural hormones, and such chemicals may pose a serious threat to the health of humans and wildlife. They are thought to act through a variety of mechanisms, mainly estrogen-receptor-mediated mechanisms of toxicity. However, it is practically impossible to perform thorough toxicological tests on all potential xenoestrogens, and thus, the quantitative structure--activity relationship (QSAR) provides a promising method for the estimation of a compound's estrogenic activity. Here, QSAR models of the estrogen receptor binding affinity of a large data set of heterogeneous chemicals have been built using theoretical molecular descriptors, giving full consideration to the new OECD principles in regulation for QSAR acceptability, during model construction and assessment. An unambiguous multiple linear regression (MLR) algorithm was used to build the models, and model predictive ability was validated by both internal and external validation. The applicability domain was checked by the leverage approach to verify prediction reliability. The results obtained using several validation paths indicate that the proposed QSAR model is robust and satisfactory, and can provide a feasible and practical tool for the rapid screening of the estrogen activity of organic compounds.

  6. [Comparisons of Microbial Numbers, Biomasses and Soil Enzyme Activities Between Paddy Field and Drvland Origins in Karst Cave Wetland].

    PubMed

    Jin, Zhen-jiang; Zeng, Hong-hu; Li, Qiang; Cheng, Ya-ping; Tang, Hua-feng; Li, Min; Huang, Bing-fu

    2016-01-15

    The purpose of this study is to compare microbial number, microbial biomass as well as soil enzyme activity between paddy field and dryland originated karst wetland ecosystems. The soil samples (0-20 cm) of uncultivated wetland, paddy field and dryland were collected in Huixian karst cave wetland, Guilin, China. Microbial numbers and biomass were detected using dilute plate incubation counting and chloroform fumigation-extraction, respectively. Microbial DNA was extracted according to the manufacturer's instructions of the kit. Microbial activity was examined using soil enzyme assays as well. The result showed that the bacteria number in paddy filed was (4.36 +/- 2.25) x 10(7) CFU x g(-1), which was significantly higher than those in wetland and dryland. Fungi numbers were (6.41 +/- 2.16) x 10(4) CFU x g(-1) in rice paddy and (6.52 +/- 1.55) x 10(4) CFU x g(-1) in wetland, which were higher than that in dryland. Actinomycetes number was (2.65 +/- 0.72) x 10(6) CFU x g(-1) in dryland, which was higher than that in wetland. Microbial DNA concentration in rice paddy was (11.92 +/- 3.69) microg x g(-1), which was higher than that in dryland. Invertase activity was (66.87 +/- 18.61) mg x (g x 24 h)(-1) in rice paddy and alkaline phosphatase activity was (2.07 +/- 0.99) mg x (g x 2 h)(-1) in wetland, both of which were higher than those in dryland. Statistical analysis showed there was a significant positive correlation of microbial DNA content, alkaline phosphatase activity and microbial carbon with soil pH, soil organic carbon (SOC), total nitrogen, alkali-hydrolyzable nitrogen, soil moisture, exchangeable Ca2+ and exchangeable Mg2+, as well as a significant positive correlation of intervase activity with the former three microbial factors. The above results indicated that microbial biomass and function responded much more sensitively to land-use change than microbial number in karst cave wetland system. Soil moisture, SOC and some factors induced by land-use change

  7. Essential role of MALT1 protease activity in activated B cell-like diffuse large B-cell lymphoma.

    PubMed

    Hailfinger, Stephan; Lenz, Georg; Ngo, Vu; Posvitz-Fejfar, Anita; Rebeaud, Fabien; Guzzardi, Montserrat; Penas, Eva-Maria Murga; Dierlamm, Judith; Chan, Wing C; Staudt, Louis M; Thome, Margot

    2009-11-24

    A key element for the development of suitable anti-cancer drugs is the identification of cancer-specific enzymatic activities that can be therapeutically targeted. Mucosa-associated lymphoid tissue transformation protein 1 (MALT1) is a proto-oncogene that contributes to tumorigenesis in diffuse large B-cell lymphoma (DLBCL) of the activated B-cell (ABC) subtype, the least curable subtype of DLBCL. Recent data suggest that MALT1 has proteolytic activity, but it is unknown whether this activity is relevant for tumor growth. Here we report that MALT1 is constitutively active in DLBCL lines of the ABC but not the GCB subtype. Inhibition of the MALT1 proteolytic activity led to reduced expression of growth factors and apoptosis inhibitors, and specifically affected the growth and survival of ABC DLBCL lines. These results demonstrate a key role for the proteolytic activity of MALT1 in DLBCL of the ABC subtype, and provide a rationale for the development of pharmacological inhibitors of MALT1 in DLBCL therapy.

  8. The influence of hypotonicity on large-conductance calcium-activated potassium channels in human retinal pigment epithelial cells.

    PubMed

    Sheu, Shwu-Jiuan; Wu, Sheng-Nan; Hu, Dan-Ning; Chen, Jane-Fane

    2004-12-01

    The aim of this study was to characterize the effects of hypotonicity on the activity of large-conductance Ca(2+)-activated K+ (BK(Ca)) channels in human retinal pigment epithelial (RPE R-50) cells. Effects of hypotonicity on ion currents were investigated with the aid of the patch-clamp technique. A regulatory volume decrease in response to a hypotonic solution (200 mOsm/L) was observed that could be blunted by paxilline. In whole-cell current recordings, a hypotonic solution (200 mOsm/L) reversibly increased the amplitude of K+ outward currents (I(K)). The increase of I(K) could be reversed by iberiotoxin (200 nM), paxilline (1 microM), or tetrandrine (5 microM), but not by glibenclamide (10 microM), disulphonic acid (DIDS) (100 microM), or dequalinium dichloride (10 microM). In RPE R-50 cells pretreated with thapsigargin, aristolochic acid, or pertussis toxin, the increased amplitude of I(K) in response to hypotonicity was unaltered. In cell-attached patches, an increase in BK(Ca)-channel activity was observed during hypotonicity-induced cell swelling. The enhanced channel activity elicited under this condition was mainly mediated by an increase in the number of long-lived openings. These findings support the evidence for the coupling of volume swelling to the functional activity of BK(Ca) channels.

  9. Function and regulation of large conductance Ca(2+)-activated K+ channel in vascular smooth muscle cells.

    PubMed

    Hu, Xiang-Qun; Zhang, Lubo

    2012-09-01

    Large conductance Ca(2+)-activated K(+) (BK(Ca)) channels are abundantly expressed in vascular smooth muscle cells. Activation of BK(Ca) channels leads to hyperpolarization of cell membrane, which in turn counteracts vasoconstriction. Therefore, BK(Ca) channels have an important role in regulation of vascular tone and blood pressure. The activity of BK(Ca) channels is subject to modulation by various factors. Furthermore, the function of BK(Ca) channels are altered in both physiological and pathophysiological conditions, such as pregnancy, hypertension and diabetes, which has dramatic impacts on vascular tone and hemodynamics. Consequently, compounds and genetic manipulation that alter activity and expression of the channel might be of therapeutic interest.

  10. Imaging large-scale cellular activity in spinal cord of freely behaving mice

    PubMed Central

    Sekiguchi, Kohei J.; Shekhtmeyster, Pavel; Merten, Katharina; Arena, Alexander; Cook, Daniela; Hoffman, Elizabeth; Ngo, Alexander; Nimmerjahn, Axel

    2016-01-01

    Sensory information from mechanoreceptors and nociceptors in the skin plays key roles in adaptive and protective motor behaviours. To date, very little is known about how this information is encoded by spinal cord cell types and their activity patterns, particularly under freely behaving conditions. To enable stable measurement of neuronal and glial cell activity in behaving mice, we have developed fluorescence imaging approaches based on two- and miniaturized one-photon microscopy. We show that distinct cutaneous stimuli activate overlapping ensembles of dorsal horn neurons, and that stimulus type and intensity is encoded at the single-cell level. In contrast, astrocytes show large-scale coordinated calcium responses to intense but not weak sensory inputs. Sensory-evoked activity is potently suppressed by anaesthesia. By revealing the cellular and computational logic of spinal cord networks under behaving conditions, our approach holds promise for better understanding of healthy and aberrant spinal cord processes. PMID:27121084

  11. An activated sludge model based on activated sludge model number 3 for full-scale wastewater treatment plant simulation.

    PubMed

    Fan, Ji; Lu, Shu-Guang; Qiu, Zhao-fu; Wang, Xiao-Xia; Li, Wen-Zhen

    2009-06-01

    A modified model based on the activated sludge model no. 3 was established to simulate a full-scale municipal wastewater treatment plant in Shanghai, China. The activated sludge model no. 3 was modified to describe the simultaneous storage and growth processes occurring in activated sludge systems under aerobic and anoxic conditions. The mechanism of soluble microbial product formation and degradation by microorganisms was considered in this proposed model. Three months simulation was conducted including soluble chemical oxygen demand, NH4(+)-N, NO(X)(-)-N and T-N parameters, and compared with measured data from the Quyang wastewater treatment plant. Results indicated that the calculated effluent chemical oxygen demand and NH4(+)-N using this proposed model were in good agreement with the measured data. Results also showed that besides inert soluble organic matter contributing to the effluent chemical oxygen demand, soluble microbial products played an important part in the effluent chemical oxygen demand and, therefore, demonstrated that these products composed an important portion of effluent soluble chemical oxygen demand in wastewater treatment plants and should not be neglected.

  12. Software Verification and Validation Plan Activities, 2011, Project Number: N6423, SAPHIRE Version 8

    SciTech Connect

    Kurt G. Vedros; Curtis L. Smith

    2011-11-01

    The SV&V Plan experienced changes over the past year to bring it into the operational software life cycle of SAPHIRE 8 and to maintain its sections on design features. Peer review of the SVVP with the former IV&V members identified the need for the operational use of metrics as a tool for quality maintenance and improvement. New tests were added to the SVVP to verify the operation of the new design features incorporated into SAPHIRE 8. Other additions to the SVVP were the addition of software metrics and the PDR and CDR processes. Audit support was provided for the NRC Technical Manager and Project Manager for the NRC OIG Audit performed throughout 2011. The SVVP is considered to be an up to date reference and useful roadmap of verification and validation activities going forward.

  13. Active region 11748: Recurring X-class flares, large scale dimmings and waves.

    NASA Astrophysics Data System (ADS)

    Davey, Alisdair R.; Malanushenko, Anna; McIntosh, Scott W.

    2014-06-01

    AR 11748 was a relatively compact active region that crossed the solar disk between 05/14/2013 and 05/26/2013. Despite its size it produced a number X-class flares, and global scale eruptive events that were captured by the SDO Feature Finding Team's (FFT) Dimming Region Detector. Using the results of this module and other FFT modules, we present an analysis of the this AR region and investigate why it was so globally impactful.

  14. Salt stress reduces kernel number of corn by inhibiting plasma membrane H(+)-ATPase activity.

    PubMed

    Jung, Stephan; Hütsch, Birgit W; Schubert, Sven

    2017-04-01

    Salt stress affects yield formation of corn (Zea mays L.) at various physiological levels resulting in an overall grain yield decrease. In this study we investigated how salt stress affects kernel development of two corn cultivars (cvs. Pioneer 3906 and Fabregas) at and shortly after pollination. In an earlier study, we found an accumulation of hexoses in the kernel tissue. Therefore, it was hypothesized that hexose uptake into developing endosperm and embryo might be inhibited. Hexoses are transported into the developing endosperm by carriers localized in the plasma membrane (PM). The transport is driven by the pH gradient which is built up by the PM H(+)-ATPase. It was investigated whether the PM H(+)-ATPase activity in developing corn kernels was inhibited by salt stress, which would cause a lower pH gradient resulting in impaired hexose import and finally in kernel abortion. Corn grown under control and salt stress conditions was harvested 0 and 2 days after pollination (DAP). Under salt stress sucrose and hexose concentrations in kernel tissue were higher 0 and 2 DAP. Kernel PM H(+)-ATPase activity was not affected at 0 DAP, but it was reduced at 2 DAP. This is in agreement with the finding, that kernel growth and thus kernel setting was not affected in the salt stress treatment at pollination, but it was reduced 2 days later. It is concluded that inhibition of PM H(+)-ATPase under salt stress impaired the energization of hexose transporters into the cells, resulting in lower kernel growth and finally in kernel abortion.

  15. Optical activities of large-area SU8 microspirals fabricated by multibeam holographic lithography.

    PubMed

    Wang, Xia; Gao, Wensheng; Hung, Jenny; Tam, Wing Yim

    2014-04-10

    We report on the fabrication of large-area microspirals in SU8 photoresist using a 6+1 beam holographic lithography (HL) technique involving the interference of six linearly polarized side beams and one circularly polarized central beam. In contrast to common photoresist-substrate (glass) configuration, the spirals are fabricated on a substrate with a precured thin SU8 photoresist. This SU8-SU8-glass configuration strengthens the attachment of the spirals to the substrate, and hence enhances the quality of the fabricated spirals. The fabricated SU8 microspirals exhibit large optical activities with a polarization rotation close to 10 deg and a circular dichroism of about 0.5 in the visible range. Our precured substrate method could lift the limitations of the HL method in fabricating large and uniform microstructures or nanostructures.

  16. Miniature microscopes for large-scale imaging of neuronal activity in freely behaving rodents.

    PubMed

    Ziv, Yaniv; Ghosh, Kunal K

    2015-06-01

    Recording neuronal activity in behaving subjects has been instrumental in studying how information is represented and processed by the brain. Recent advances in optical imaging and bioengineering have converged to enable time-lapse, cell-type specific recordings of neuronal activities from large neuronal populations in deep-brain structures of freely behaving rodents. We will highlight these advancements, with an emphasis on miniaturized integrated microscopy for large-scale imaging in freely behaving mice. This technology potentially enables studies that were difficult to perform using previous generation imaging and current electrophysiological techniques. These studies include longitudinal and population-level analyses of neuronal representations associated with different types of naturalistic behaviors and cognitive or emotional processes.

  17. Active Removal of Large Debris: System Approach of Desorbiting Concepts and Technological Issues

    NASA Astrophysics Data System (ADS)

    Couzin, Patrice; Rembala, Richard; Teti, Frank; Bakouche, Charles; Billot, Carole

    2013-08-01

    The threat induced by large space debris, dead satellites or rocket bodies, in Low Earth Orbit has been identified years ago. A first part of the Orbital Transfer Vehicle (OTV) study was dedicated to identify mission architectures that can fulfil the objective to eliminate the necessary number of critical debris. Those potential solutions and architectures have been compared taking into account cost considerations. The present paper reports the first results of the OTV step2 study funded by CNES that addresses different solutions for large debris removal. It compares different desorbiting concepts from selected single to multiple debris complying with the Space Law, i.e. able to ensure controlled re entries. Different capture options are presented, including sensors needs and an analysis of the problems posed by different solutions. The overall performances of the concepts are compared, showing the adequacy, the limits of each solutions and application domains.

  18. The number of preproghrelin mRNA expressing cells is increased in mice with activity-based anorexia.

    PubMed

    François, Marie; Barde, Swapnali; Achamrah, Najate; Breton, Jonathan; do Rego, Jean-Claude; Coëffier, Moïse; Hökfelt, Tomas; Déchelotte, Pierre; Fetissov, Sergueï O

    2015-06-01

    Plasma levels of ghrelin, an orexigenic peptide, are increased during conditions of chronic starvation, such as in patients with anorexia nervosa. However, it is not known whether such increase can be related to the number of preproghrelin mRNA-expressing cells in the stomach, and if chronic starvation may activate a tentative central ghrelin production. In this work, in situ hybridization technique was used to analyze the presence and number of preproghrelin mRNA-expressing cells in the stomach and the hypothalamus of mice with activity-based anorexia (ABA) induced by the combination of running wheel activity with progressive, during 10 days, feeding-time restriction (FTR) and compared with sedentary FTR, ABA pair-fed (PF) and ad libitum-fed control mice. All food-restricted mice lost more than 20% of body weight. Body weight loss was similar in ABA and PF mice, but it was more pronounced than in FTR mice. Food intake was also lower in ABA than in FTR mice. Preproghrelin mRNA-expressing cells in the stomach were increased proportionally to the body weight loss in all food-restricted groups with the highest number in ABA mice. No preproghrelin mRNA-producing cells were detectable in the hypothalamus of either control or food-restricted mice. Thus, the increased number of gastric preproghrelin mRNA-producing cells during chronic starvation proportionally to the body weight loss and reduced food intake may underlie increased plasma ghrelin. Hyperactivity-induced anorexia appears to further increase the number of preproghrelin mRNA-producing cells in the stomach. No evidence was found for ghrelin expression in the hypothalamus, not even in any of the present experimental models.

  19. Studies of a Large Odd‐Numbered Odd‐Electron Metal Ring: Inelastic Neutron Scattering and Muon Spin Relaxation Spectroscopy of Cr8Mn

    PubMed Central

    Lancaster, Tom; Chiesa, Alessandro; Amoretti, Giuseppe; Baker, Peter J.; Barker, Claire; Carretta, Stefano; Collison, David; Güdel, Hans U.; Guidi, Tatiana; McInnes, Eric J. L.; Möller, Johannes S.; Mutka, Hannu; Ollivier, Jacques; Pratt, Francis L.; Santini, Paolo; Tuna, Floriana; Tregenna‐Piggott, Philip L. W.; Vitorica‐Yrezabal, Iñigo J.; Timco, Grigore A.

    2016-01-01

    Abstract The spin dynamics of Cr8Mn, a nine‐membered antiferromagnetic (AF) molecular nanomagnet, are investigated. Cr8Mn is a rare example of a large odd‐membered AF ring, and has an odd‐number of 3d‐electrons present. Odd‐membered AF rings are unusual and of interest due to the presence of competing exchange interactions that result in frustrated‐spin ground states. The chemical synthesis and structures of two Cr8Mn variants that differ only in their crystal packing are reported. Evidence of spin frustration is investigated by inelastic neutron scattering (INS) and muon spin relaxation spectroscopy (μSR). From INS studies we accurately determine an appropriate microscopic spin Hamiltonian and we show that μSR is sensitive to the ground‐spin‐state crossing from S=1/2 to S=3/2 in Cr8Mn. The estimated width of the muon asymmetry resonance is consistent with the presence of an avoided crossing. The investigation of the internal spin structure of the ground state, through the analysis of spin‐pair correlations and scalar‐spin chirality, shows a non‐collinear spin structure that fluctuates between non‐planar states of opposite chiralities. PMID:26748964

  20. Correlation between the structural and cathodoluminescence properties in InGaN/GaN multiple quantum wells with large number of quantum wells

    SciTech Connect

    Yang, Jing; Zhao, Degang Jiang, Desheng; Chen, Ping; Zhu, Jianjun; Liu, Zongshun; Le, Lingcong; He, Xiaoguang; Li, Xiaojing; Wang, Hui; Yang, Hui; Jahn, Uwe

    2014-09-01

    Cathodoluminescence (CL) characteristics on 30-period InGaN/GaN multiple quantum well (MQW) solar cell structures are investigated, revealing the relationship between optical and structural properties of the MQW structures with a large number of quantum wells. In the bottom MQW layers, a blueshift of CL peak along the growth direction is found and attributed to the decrease of indium content due to the compositional pulling effect. An obvious split of emission peak and a redshift of the main emission energy are found in the top MQW layers when the MQW grows above the critical layer thickness. They are attributed to the segregation of In-rich InGaN clusters rather than the increase of indium content in quantum well layer. The MQW structure is identified to consist of two regions: a strained one in the bottom, where the indium content is gradually decreased, and a partly relaxed one in the top with segregated In-rich InGaN clusters.

  1. The large X-effect on secondary sexual characters and the genetics of variation in sex comb tooth number in Drosophila subobscura.

    PubMed

    Mittleman, Briana E; Manzano-Winkler, Brenda; Hall, Julianne B; Korunes, Katharine L; Noor, Mohamed A F

    2017-01-01

    Genetic studies of secondary sexual traits provide insights into whether and how selection drove their divergence among populations, and these studies often focus on the fraction of variation attributable to genes on the X-chromosome. However, such studies may sometimes misinterpret the amount of variation attributable to the X-chromosome if using only simple reciprocal F1 crosses, or they may presume sexual selection has affected the observed phenotypic variation. We examined the genetics of a secondary sexual trait, male sex comb size, in Drosophila subobscura. This species bears unusually large sex combs for its species group, and therefore, this trait may be a good candidate for having been affected by natural or sexual selection. We observed significant heritable variation in number of teeth of the distal sex comb across strains. While reciprocal F1 crosses seemed to implicate a disproportionate X-chromosome effect, further examination in the F2 progeny showed that transgressive autosomal effects inflated the estimate of variation associated with the X-chromosome in the F1. Instead, the X-chromosome appears to confer the smallest contribution of all major chromosomes to the observed phenotypic variation. Further, we failed to detect effects on copulation latency or duration associated with the observed phenotypic variation. Overall, this study presents an examination of the genetics underlying segregating phenotypic variation within species and illustrates two common pitfalls associated with some past studies of the genetic basis of secondary sexual traits.

  2. Studies of a Large Odd-Numbered Odd-Electron Metal Ring: Inelastic Neutron Scattering and Muon Spin Relaxation Spectroscopy of Cr8 Mn.

    PubMed

    Baker, Michael L; Lancaster, Tom; Chiesa, Alessandro; Amoretti, Giuseppe; Baker, Peter J; Barker, Claire; Blundell, Stephen J; Carretta, Stefano; Collison, David; Güdel, Hans U; Guidi, Tatiana; McInnes, Eric J L; Möller, Johannes S; Mutka, Hannu; Ollivier, Jacques; Pratt, Francis L; Santini, Paolo; Tuna, Floriana; Tregenna-Piggott, Philip L W; Vitorica-Yrezabal, Iñigo J; Timco, Grigore A; Winpenny, Richard E P

    2016-01-26

    The spin dynamics of Cr8 Mn, a nine-membered antiferromagnetic (AF) molecular nanomagnet, are investigated. Cr8 Mn is a rare example of a large odd-membered AF ring, and has an odd-number of 3d-electrons present. Odd-membered AF rings are unusual and of interest due to the presence of competing exchange interactions that result in frustrated-spin ground states. The chemical synthesis and structures of two Cr8 Mn variants that differ only in their crystal packing are reported. Evidence of spin frustration is investigated by inelastic neutron scattering (INS) and muon spin relaxation spectroscopy (μSR). From INS studies we accurately determine an appropriate microscopic spin Hamiltonian and we show that μSR is sensitive to the ground-spin-state crossing from S=1/2 to S=3/2 in Cr8 Mn. The estimated width of the muon asymmetry resonance is consistent with the presence of an avoided crossing. The investigation of the internal spin structure of the ground state, through the analysis of spin-pair correlations and scalar-spin chirality, shows a non-collinear spin structure that fluctuates between non-planar states of opposite chiralities.

  3. Improved estimation of the noncentrality parameter distribution from a large number of t-statistics, with applications to false discovery rate estimation in microarray data analysis.

    PubMed

    Qu, Long; Nettleton, Dan; Dekkers, Jack C M

    2012-12-01

    Given a large number of t-statistics, we consider the problem of approximating the distribution of noncentrality parameters (NCPs) by a continuous density. This problem is closely related to the control of false discovery rates (FDR) in massive hypothesis testing applications, e.g., microarray gene expression analysis. Our methodology is similar to, but improves upon, the existing approach by Ruppert, Nettleton, and Hwang (2007, Biometrics, 63, 483-495). We provide parametric, nonparametric, and semiparametric estimators for the distribution of NCPs, as well as estimates of the FDR and local FDR. In the parametric situation, we assume that the NCPs follow a distribution that leads to an analytically available marginal distribution for the test statistics. In the nonparametric situation, we use convex combinations of basis density functions to estimate the density of the NCPs. A sequential quadratic programming procedure is developed to maximize the penalized likelihood. The smoothing parameter is selected with the approximate network information criterion. A semiparametric estimator is also developed to combine both parametric and nonparametric fits. Simulations show that, under a variety of situations, our density estimates are closer to the underlying truth and our FDR estimates are improved compared with alternative methods. Data-based simulations and the analyses of two microarray datasets are used to evaluate the performance in realistic situations.

  4. Large number of putative chemoreception and pheromone biosynthesis genes revealed by analyzing transcriptome from ovipositor-pheromone glands of Chilo suppressalis.

    PubMed

    Xia, Yi-Han; Zhang, Ya-Nan; Hou, Xiao-Qing; Li, Fei; Dong, Shuang-Lin

    2015-01-20

    The chemoreception role of moth ovipositor has long been suggested, but its molecular mechanism is mostly unknown. By transcriptomic analysis of the female ovipositor-pheromone glands (OV-PG) of Chilo suppressalis, we obtained 31 putative chemoreception genes (9 OBPs, 10 CSPs, 2 ORs, 1 SNMP, 8 CXEs and 1 AOX), in addition to 32 genes related to sex pheromone biosynthesis (1 FAS, 6 Dess, 10 FARs, 2 ACOs, 1 ACC, 4 FATPs, 3 ACBPs and 5 ELOs). Tissue expression profiles further revealed that CsupCSP2 and CsupCSP10 were OV-PG biased, while most chemoreception genes were highly and preferably expressed in antennae. This suggests that OV-PG employs mostly the same chemoreception proteins as in antennae, although the physiological roles of these proteins might be different in OV-PG. Of the 32 pheromone biosynthesis related genes, CsupDes4, CsupDes5 and CsupFAR2 are strongly OV-PG biased, and clustered with functionally validated genes from other moths, strongly indicating their involvement in specific step of the pheromone biosynthesis. Our study for the first time identified a large number of putative chemoreception genes, and provided an important basis for exploring the chemoreception mechanisms of OV-PG in C. suppressalis, as well as other moth species.

  5. CNTF-Treated Astrocyte Conditioned Medium Enhances Large-Conductance Calcium-Activated Potassium Channel Activity in Rat Cortical Neurons.

    PubMed

    Sun, Meiqun; Liu, Hongli; Xu, Huanbai; Wang, Hongtao; Wang, Xiaojing

    2016-08-01

    Seizure activity is linked to astrocyte activation as well as dysfunctional cortical neuron excitability produced from changes in calcium-activated potassium (KCa) channel function. Ciliary neurotrophic factor-treated astrocyte conditioned medium (CNTF-ACM) can be used to investigate the peripheral effects of activated astrocytes upon cortical neurons. However, CNTF-ACM's effect upon KCa channel activity in cultured cortical neurons has not yet been investigated. Whole-cell patch clamp recordings were performed in rat cortical neurons to evaluate CNTF-ACM's effects upon charybdotoxin-sensitive large-conductance KCa (BK) channel currents and apamin-sensitive small-conductance KCa (SK) channel current. Biotinylation and RT-PCR were applied to assess CNTF-ACM's effects upon the protein and mRNA expression, respectively, of the SK channel subunits SK2 and SK3 and the BK channel subunits BKα1 and BKβ3. An anti-fibroblast growth factor-2 (FGF-2) monoclonal neutralizing antibody was used to assess the effects of the FGF-2 component of CNTF-ACM. CNTF-ACM significantly increased KCa channel current density, which was predominantly attributable to gains in BK channel activity (p < 0.05). CNTF-ACM produced a significant increase in BKα1 and BKβ3 expression (p < 0.05) but had no significant effect upon SK2 or SK3 expression (p > 0.05). Blocking FGF-2 produced significant reductions in KCa channel current density (p > 0.05) as well as BKα1 and BKβ3 expression in CNTF-ACM-treated neurons (p > 0.05). CNTF-ACM significantly enhances BK channel activity in rat cortical neurons and that FGF-2 is partially responsible for these effects. CNTF-induced astrocyte activation results in secretion of neuroactive factors which may affect neuronal excitability and resultant seizure activity in mammalian cortical neurons.

  6. Development of GoSlo-SR-5-69, a potent activator of large conductance Ca2+-activated K+ (BK) channels.

    PubMed

    Roy, Subhrangsu; Large, Roddy J; Akande, Adebola Morayo; Kshatri, Aravind; Webb, Tim I; Domene, Carmen; Sergeant, Gerard P; McHale, Noel G; Thornbury, Keith D; Hollywood, Mark A

    2014-03-21

    We have designed, synthesised and characterised the effects of a number of novel anthraquinone derivatives and assessed their effects on large conductance, Ca(2+) activated K(+) (BK) channels recorded from rabbit bladder smooth muscle cells using the excised, inside/out configuration of the patch clamp technique. These compounds are members of the GoSlo-SR family of compounds, which potently open BK channels and shift the voltage required for half maximal activation (V1/2) negatively. The efficacy of the anilinoanthraquinone derivatives was enhanced when the size of ring D was increased, since the cyclopentane and cyclohexane derivatives shifted the V1/2, by -24 ± 6 mV and -54 ± 8 mV, respectively, whereas the cycloheptane and cyclooctane derivatives shifted the V1/2 by -61 ± 6 mV and -106 ± 6 mV. To examine if a combination of hydrophobicity and steric bulking of this region further enhanced their ability to open BK channels, we synthesised a number of naphthalene and tetrahydro-naphthalene derivatives. The tetrahydro-2-naphthalene derivative GoSlo-SR-5-69 was the most potent and efficacious of the series since it was able to shift the activation V1/2 by greater than -100 mV when applied at a concentration of 1 μM and had an EC50 of 251 nM, making it one of the most potent and efficacious BK channel openers synthesised to date.

  7. Number of transients/Q-bursts in ELF-band as possible criterion for global thunderstorm activity estimation.

    NASA Astrophysics Data System (ADS)

    Ondraskova, Adriena; Sevcik, Sebastian

    2015-04-01

    Schumann resonances (SR) are resonant electromagnetic oscillations in extremely low frequency band (ELF, 3 Hz - 3 kHz), which arise in the Earth-ionosphere cavity due to lightning activity in planetary range. The time records in the ELF-band consist of background signals and ELF transients/Q-bursts superimposed on the background exceeding it by a factor of 5 - 10. The former are produced by the common worldwide thunderstorm activity (100 - 150 events per second), the latter origin from individual intense distant lightning discharges (100 - 120 powerful strokes per hour). A Q-burst is produced by a combination of direct and antipodal pulses and the decisive factor for its shape follows from the source-to-observer distance (SOD). Diurnal/seasonal variations of global thunderstorm activity can be deduced from spectral amplitudes of SR modes. Here we focus on diurnal/seasonal variations of the number of ELF-transients assuming that it is another way of lightning activity estimation. To search for transients, our own code was applied to the SR vertical electric component measured in October 2004 - December 2008 at the Astronomical and Geophysical Observatory of FMPI CU, Slovakia. Limits (min-max) for the width of primary spike, time difference between primary and secondary spike and the amplitude of the spike were chosen as criteria for the identification of the burst. Cumulative spectral amplitude of the first three SR modes compared with number of ELF-transients in monthly averaged diurnal variations quite successfully confirmed, that the number of transients can be a suitable criterion for the quantification of global lightning activity.

  8. CURRENT HELICITY OF ACTIVE REGIONS AS A TRACER OF LARGE-SCALE SOLAR MAGNETIC HELICITY

    SciTech Connect

    Zhang, H.; Gao, Y.; Xu, H.; Moss, D.; Kleeorin, N.; Rogachevskii, I.; Kuzanyan, K.; Sokoloff, D.

    2012-05-20

    We demonstrate that the current helicity observed in solar active regions traces the magnetic helicity of the large-scale dynamo generated field. We use an advanced two-dimensional mean-field dynamo model with dynamo saturation based on the evolution of the magnetic helicity and algebraic quenching. For comparison, we also studied a more basic two-dimensional mean-field dynamo model with simple algebraic alpha-quenching only. Using these numerical models we obtained butterfly diagrams both for the small-scale current helicity and also for the large-scale magnetic helicity, and compared them with the butterfly diagram for the current helicity in active regions obtained from observations. This comparison shows that the current helicity of active regions, as estimated by -A {center_dot} B evaluated at the depth from which the active region arises, resembles the observational data much better than the small-scale current helicity calculated directly from the helicity evolution equation. Here B and A are, respectively, the dynamo generated mean magnetic field and its vector potential. A theoretical interpretation of these results is given.

  9. Low Cost Hands-On Activities in Large Lecture Conceptual Physics Course

    NASA Astrophysics Data System (ADS)

    Dimiduk, Kathryn

    1998-10-01

    The student diversity in a university conceptual physic course presents a challenge to sustain the interest of all the students, to provide a solid conceptual basis for students continuing in science or engineering and to present science as an active subject rather than as vocabulary lists, rules and book knowledge. Combining ideas from the literature for teaching large lecture calculus based physics and science leary education majors in small class settings has resulted in a large (120 student) class format that mixes low cost (< $1,000 for term) hands-on activities, demonstrations, summary discussions and lectures. Hands-on activities are done in small groups which allows the diversity to become an asset. Several of these activities will be described in detail. The effectiveness of this teaching approach will be presented based on results of pre and post Force Concept Inventory test scores for this class and a comparison class that just used lecture and demonstrations for mechanics. The classes under comparison were taught by the same instructor, from the same book, were of similar size and neither had any additional teaching staff.

  10. Dietary fibres modulate the composition and activity of butyrate-producing bacteria in the large intestine of suckling piglets.

    PubMed

    Mu, Chunlong; Zhang, Lingli; He, Xiangyu; Smidt, Hauke; Zhu, Weiyun

    2017-02-04

    Dietary fibres have been shown to affect early-life microbiota colonization in the large intestine of suckling piglets, however, much less is known as to whether they also modulate the composition and activity of butyrate-producing bacteria. Here, we investigated the effect of dietary fibres on the abundance, composition, and activity of butyrate-producing bacteria in suckling piglets. Piglets were fed a control diet or creep feeds containing alfalfa, wheat bran, or pure cellulose, respectively, from postnatal day 7 to 22. Large intestinal digesta and mucosa samples were collected for quantitative analysis of bacterial group-specific 16S ribosomal RNA- and butyrate production-related genes, and digesta samples for quantification of short-chain fatty acids. The alfalfa diet increased (P < 0.05) Clostridium cluster XIVa abundance, copies of genes encoding proteins involved in butyrate production (butyryl-CoA:acetate CoA-transferase, butyrate kinase), and butyrate concentration compared to the wheat bran diet in the digesta of the proximal colon. In the distal colonic digesta, animals fed the alfalfa diet had the highest number of butyryl-CoA:acetate CoA-transferase gene copies (P < 0.05) and numerically the highest butyrate concentration, albeit not significant (P > 0.05), compared to other groups. In the distal colonic mucosa, the cellulose diet increased (P < 0.05) the abundance of Clostridium cluster XIVa and copies of the butyryl-CoA:acetate CoA-transferase gene compared to the alfalfa diet. These results indicated that dietary fibres modulate the abundance and activity of butyrate-producing bacteria in the large intestine of suckling piglets, and that a moderate supplementation of alfalfa and cellulose may benefit early-life gut health through the delivery of butyrate to the mucosa.

  11. Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit

    PubMed Central

    Scorcioni, Ruggero; Hamilton, David J.; Ascoli, Giorgio A.

    2008-01-01

    The mammalian hippocampus is involved in spatial representation and memory storage and retrieval, and much research is ongoing to elucidate the cellular and system-level mechanisms underlying these cognitive functions. Modeling may be useful to link network-level activity patterns to the relevant features of hippocampal anatomy and electrophysiology. Investigating the effects of circuit connectivity requires simulations of a number of neurons close to real scale. Toward this end, we construct a model of the hippocampus with 16 distinct neuronal classes (including both local and projection cells) and 200,000 individual neurons. The number of neurons in each class and their interconnectivity are drawn from rat anatomy. Here we analyze the emergent network activity and how it is affected by reducing either the size or the connectivity diversity of the model. When the model is run with a simple variation of the McCulloch-Pitts formalism, self-sustaining non-repetitive activity patterns consistently emerge. Specific firing threshold values are narrowly constrained for each cell class upon multiple runs with different stochastic wiring and initial conditions, yet these values do not directly affect network stability. Analysis of the model at different network sizes demonstrates that a scale reduction of one order of magnitude drastically alters network dynamics, including the variability of the output range, the distribution of firing frequencies, and the duration of self-sustained activity. Moreover, comparing the model to a control condition with an equivalent number of (excitatory/inhibitory balanced) synapses, but removing all class-specific information (i.e. collapsing the network to homogeneous random connectivity) has surprisingly similar effects to downsizing the total number of neurons. The reduced-scale model is also compared directly with integrate-and-fire simulations, which capture considerably more physiological detail at the single-cell level, but still

  12. Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit.

    PubMed

    Scorcioni, Ruggero; Hamilton, David J; Ascoli, Giorgio A

    2008-10-01

    The mammalian hippocampus is involved in spatial representation and memory storage and retrieval, and much research is ongoing to elucidate the cellular and system-level mechanisms underlying these cognitive functions. Modeling may be useful to link network-level activity patterns to the relevant features of hippocampal anatomy and electrophysiology. Investigating the effects of circuit connectivity requires simulations of a number of neurons close to real scale. To this end, we construct a model of the hippocampus with 16 distinct neuronal classes (including both local and projection cells) and 200,000 individual neurons. The number of neurons in each class and their interconnectivity are drawn from rat anatomy. Here we analyze the emergent network activity and how it is affected by reducing either the size or the connectivity diversity of the model. When the model is run with a simple variation of the McCulloch-Pitts formalism, self-sustaining non-repetitive activity patterns consistently emerge. Specific firing threshold values are narrowly constrained for each cell class upon multiple runs with different stochastic wiring and initial conditions, yet these values do not directly affect network stability. Analysis of the model at different network sizes demonstrates that a scale reduction of one order of magnitude drastically alters network dynamics, including the variability of the output range, the distribution of firing frequencies, and the duration of self-sustained activity. Moreover, comparing the model to a control condition with an equivalent number of (excitatory/inhibitory balanced) synapses, but removing all class-specific information (i.e. collapsing the network to homogeneous random connectivity) has surprisingly similar effects to downsizing the total number of neurons. The reduced-scale model is also compared directly with integrate-and-fire simulations, which capture considerably more physiological detail at the single-cell level, but still fail

  13. The activity and copy number of mitochondrial DNA in ovine oocytes throughout oogenesis in vivo and during oocyte maturation in vitro.

    PubMed

    Cotterill, Matthew; Harris, Sarah E; Collado Fernandez, Esther; Lu, Jianping; Huntriss, John D; Campbell, Bruce K; Picton, Helen M

    2013-07-01

    Mitochondria are responsible for the production of ATP, which drives cellular metabolic and biosynthetic processes. This is the first study to quantify the mtDNA copy number across all stages of oogenesis in a large monovulatory species, it includes assessment of the activity of mitochondria in germinal vesicle (GV) and metaphase II (MII) oocytes through JC1 staining. Primordial to early antral follicles (n = 249) were isolated from the sheep ovarian cortex following digestion at 37°C for 1 h and all oocytes were disaggregated from their somatic cells. Germinal vesicle oocytes (n = 133) were aspirated from 3- to 5-mm diameter antral follicles, and mature MII oocytes (n = 71) were generated following in vitro maturation (IVM). The mtDNA copy number in each oocyte was quantified using real-time PCR and showed a progressive, but variable increase in the amount of mtDNA in oocytes from primordial follicles (605 ± 205, n = 8) to mature MII oocytes (744 633 ± 115 799, n = 13; P < 0.05). Mitochondrial activity (P > 0.05) was not altered during meiotic progression from GV to MII during IVM. The observed increase in the mtDNA copy number across oogenesis reflects the changing ATP demands needed to orchestrate cytoskeletal and cytoplasmic reorganization during oocyte growth and maturation and the need to fuel the resumption of meiosis in mature oocytes following the pre-ovulatory gonadotrophin surge.

  14. Assessing Activity and Location of Individual Laying Hens in Large Groups Using Modern Technology

    PubMed Central

    Siegford, Janice M.; Berezowski, John; Biswas, Subir K.; Daigle, Courtney L.; Gebhardt-Henrich, Sabine G.; Hernandez, Carlos E.; Thurner, Stefan; Toscano, Michael J.

    2016-01-01

    Simple Summary Tracking of individual animals within large groups is increasingly possible offering an exciting opportunity to researchers. Whereas previously only relatively indistinguishable groups of individual animals could be observed and combined into pen level data, we can now focus on individual actors and track their activities across time and space with minimal intervention and disturbance. We describe several tracking systems that are currently in use for laying hens and review each, highlighting their strengths and weaknesses, as well as environments or conditions for which they may be most suited, and relevant issues to fit the best technology for the intended purpose. Abstract Tracking individual animals within large groups is increasingly possible, offering an exciting opportunity to researchers. Whereas previously only relatively indistinguishable groups of individual animals could be observed and combined into pen level data, we can now focus on individual actors within these large groups and track their activities across time and space with minimal intervention and disturbance. The development is particularly relevant to the poultry industry as, due to a shift away from battery cages, flock sizes are increasingly becoming larger and environments more complex. Many efforts have been made to track individual bird behavior and activity in large groups using a variety of methodologies with variable success. Of the technologies in use, each has associated benefits and detriments, which can make the approach more or less suitable for certain environments and experiments. Within this article, we have divided several tracking systems that are currently available into two major categories (radio frequency identification and radio signal strength) and review the strengths and weaknesses of each, as well as environments or conditions for which they may be most suitable. We also describe related topics including types of analysis for the data and concerns

  15. LARGE SOLAR ENERGETIC PARTICLE EVENTS ASSOCIATED WITH FILAMENT ERUPTIONS OUTSIDE ACTIVE REGIONS

    SciTech Connect

    Gopalswamy, N.; Mäkelä, P.; Akiyama, S.; Yashiro, S.; Xie, H.; Thakur, N.; Kahler, S. W.

    2015-06-10

    We report on four large filament eruptions (FEs) from solar cycles 23 and 24 that were associated with large solar energetic particle (SEP) events and interplanetary type II radio bursts. The post-eruption arcades corresponded mostly to C-class soft X-ray enhancements, but an M1.0 flare was associated with one event. However, the associated coronal mass ejections (CMEs) were fast (speeds ∼ 1000 km s{sup −1}) and appeared as halo CMEs in the coronagraph field of view. The interplanetary type II radio bursts occurred over a wide wavelength range, indicating the existence of strong shocks throughout the inner heliosphere. No metric type II bursts were present in three events, indicating that the shocks formed beyond 2–3 Rs. In one case, there was a metric type II burst with low starting frequency, indicating a shock formation height of ∼2 Rs. The FE-associated SEP events did have softer spectra (spectral index >4) in the 10–100 MeV range, but there were other low-intensity SEP events with spectral indices ≥4. Some of these events are likely FE-SEP events, but were not classified as such in the literature because they occurred close to active regions. Some were definitely associated with large active region flares, but the shock formation height was large. We definitely find a diminished role for flares and complex type III burst durations in these large SEP events. Fast CMEs and shock formation at larger distances from the Sun seem to be the primary characteristics of the FE-associated SEP events.

  16. Large Solar Energetic Particle Events Associated With Filament Eruptions Outside Active Regions

    NASA Technical Reports Server (NTRS)

    Gopalswamy, N.; Makela, P.; Akiyama, S.; Yashiro, S.; Xie, H.; Thakur, N.; Kahler, S. W.

    2015-01-01

    We report on four large filament eruptions (FEs) from solar cycles 23 and 24 that were associated with large solar energetic particle (SEP) events and interplanetary type II radio bursts. The post-eruption arcades corresponded mostly to C-class soft X-ray enhancements, but an M1.0 flare was associated with one event. However, the associated coronal mass ejections (CMEs) were fast (speeds approx. 1000 km/s) and appeared as halo CMEs in the coronagraph field of view. The interplanetary type II radio bursts occurred over a wide wavelength range, indicating the existence of strong shocks throughout the inner heliosphere. No metric type II bursts were present in three events, indicating that the shocks formed beyond 2-3 Rs. In one case, there was a metric type II burst with low starting frequency, indicating a shock formation height of approx.2 Rs. The FE-associated SEP events did have softer spectra (spectral index >4) in the 10-100 MeV range, but there were other low-intensity SEP events with spectral indices ?4. Some of these events are likely FE-SEP events, but were not classified as such in the literature because they occurred close to active regions. Some were definitely associated with large active region flares, but the shock formation height was large. We definitely find a diminished role for flares and complex type III burst durations in these large SEP events. Fast CMEs and shock formation at larger distances from the Sun seem to be the primary characteristics of the FE-associated SEP events.

  17. BDNF Enhances Quantal Neurotransmitter Release and Increases the Number of Docked Vesicles at the Active Zones of Hippocampal Excitatory Synapses

    PubMed Central

    Tyler, William J.; Pozzo-Miller, Lucas D.

    2009-01-01

    Brain-derived neurotrophic factor (BDNF) is emerging as a key mediator of activity-dependent modifications of synaptic strength in the CNS. We investigated the hypothesis that BDNF enhances quantal neurotransmitter release by modulating the distribution of synaptic vesicles within presynaptic terminals using organotypic slice cultures of postnatal rat hippocampus. BDNF specifically increased the number of docked vesicles at the active zone of excitatory synapses on CA1 dendritic spines, with only a small increase in active zone size. In agreement with the hypothesis that an increased docked vesicle density enhances quantal neurotransmitter release, BDNF increased the frequency, but not the amplitude, of AMPA receptor-mediated miniature EPSCs (mEPSCs) recorded from CA1 pyramidal neurons in hippocampal slices. Synapse number, independently estimated from dendritic spine density and electron microscopy measurements, was also increased after BDNF treatment, indicating that the actions of BNDF on mEPSC frequency can be partially attributed to an increased synaptic density. Our results further suggest that all these actions were mediated via tyrosine kinase B (TrkB) receptor activation, established by inhibition of plasma membrane tyrosine kinases with K-252a. These results provide additional evidence of a fundamental role of the BDNF–TrkB signaling cascade in synaptic transmission, as well as in cellular models of hippocampus-dependent learning and memory. PMID:11404410

  18. The effects of Reynolds number, rotor incidence angle, and surface roughness on the heat transfer distribution in a large-scale turbine rotor passage

    NASA Technical Reports Server (NTRS)

    Blair, Michael F.; Anderson, Olof L.

    1989-01-01

    A combined experimental and computational program was conducted to examine the heat transfer distribution in a turbine rotor passage geometrically similiar to the Space Shuttle Main Engine (SSME) High Pressure Fuel Turbopump (HPFTP). Heat transfer was measured and computed for both the full-span suction and pressure surfaces of the rotor airfoil as well as for the hub endwall surface. The primary objective of the program was to provide a benchmark-quality data base for the assessment of rotor passage heat transfer computational procedures. The experimental portion of the study was conducted in a large-scale, ambient temperature, rotating turbine model. Heat transfer data were obtained using thermocouple and liquid-crystal techniques to measure temperature distributions on the thin, electrically-heated skin of the rotor passage model. Test data were obtained for various combinations of Reynolds number, rotor incidence angle and model surface roughness. The data are reported in the form of contour maps of Stanton number. These heat distribution maps revealed numerous local effects produced by the three-dimensional flows within the rotor passage. Of particular importance were regions of local enhancement produced on the airfoil suction surface by the main-passage and tip-leakage vortices and on the hub endwall by the leading-edge horseshoe vortex system. The computational portion consisted of the application of a well-posed parabolized Navier-Stokes analysis to the calculation of the three-dimensional viscous flow through ducts simulating the a gas turbine passage. These cases include a 90 deg turning duct, a gas turbine cascade simulating a stator passage, and a gas turbine rotor passage including Coriolis forces. The calculated results were evaluated using experimental data of the three-dimensional velocity fields, wall static pressures, and wall heat transfer on the suction surface of the turbine airfoil and on the end wall. Particular attention was paid to an

  19. Muscle activation described with a differential equation model for large ensembles of locally coupled molecular motors.

    PubMed

    Walcott, Sam

    2014-10-01

    Molecular motors, by turning chemical energy into mechanical work, are responsible for active cellular processes. Often groups of these motors work together to perform their biological role. Motors in an ensemble are coupled and exhibit complex emergent behavior. Although large motor ensembles can be modeled with partial differential equations (PDEs) by assuming that molecules function independently of their neighbors, this assumption is violated when motors are coupled locally. It is therefore unclear how to describe the ensemble behavior of the locally coupled motors responsible for biological processes such as calcium-dependent skeletal muscle activation. Here we develop a theory to describe locally coupled motor ensembles and apply the theory to skeletal muscle activation. The central idea is that a muscle filament can be divided into two phases: an active and an inactive phase. Dynamic changes in the relative size of these phases are described by a set of linear ordinary differential equations (ODEs). As the dynamics of the active phase are described by PDEs, muscle activation is governed by a set of coupled ODEs and PDEs, building on previous PDE models. With comparison to Monte Carlo simulations, we demonstrate that the theory captures the behavior of locally coupled ensembles. The theory also plausibly describes and predicts muscle experiments from molecular to whole muscle scales, suggesting that a micro- to macroscale muscle model is within reach.

  20. scaling theory of floods for predictions in a changing climate: a model to generate ensembles of runoff from a large number of hillslopes (Invited)

    NASA Astrophysics Data System (ADS)

    Furey, P.; Gupta, V. K.; Troutman, B. M.

    2013-12-01

    the model, we develop a method for representing ensembles of runoff in a large number of hillslopes within an unnested subbasin in GCEW. Our model preserves water balance in a mean statistical sense and supports our hypothesis. Self-similarity in river networks is not expected to change over decadal to centennial time scales at which climate change is viewed. Therefore, applicability of the theory does not depend on assumptions regarding climatic stationarity or non-stationarity.

  1. Assessing Activity and Location of Individual Laying Hens in Large Groups Using Modern Technology.

    PubMed

    Siegford, Janice M; Berezowski, John; Biswas, Subir K; Daigle, Courtney L; Gebhardt-Henrich, Sabine G; Hernandez, Carlos E; Thurner, Stefan; Toscano, Michael J

    2016-02-02

    Tracking individual animals within large groups is increasingly possible, offering an exciting opportunity to researchers. Whereas previously only relatively indistinguishable groups of individual animals could be observed and combined into pen level data, we can now focus on individual actors within these large groups and track their activities across time and space with minimal intervention and disturbance. The development is particularly relevant to the poultry industry as, due to a shift away from battery cages, flock sizes are increasingly becoming larger and environments more complex. Many efforts have been made to track individual bird behavior and activity in large groups using a variety of methodologies with variable success. Of the technologies in use, each has associated benefits and detriments, which can make the approach more or less suitable for certain environments and experiments. Within this article, we have divided several tracking systems that are currently available into two major categories (radio frequency identification and radio signal strength) and review the strengths and weaknesses of each, as well as environments or conditions for which they may be most suitable. We also describe related topics including types of analysis for the data and concerns with selecting focal birds.

  2. Alternative Patterning Process for Realization of Large-Area, Full-Color, Active Quantum Dot Display.

    PubMed

    Park, Joon-Suh; Kyhm, Jihoon; Kim, Hong Hee; Jeong, Shinyoung; Kang, JoonHyun; Lee, Song-Ee; Lee, Kyu-Tae; Park, Kisun; Barange, Nilesh; Han, JiYeong; Song, Jin Dong; Choi, Won Kook; Han, Il Ki

    2016-11-09

    Although various colloidal quantum dot (QD) coating and patterning techniques have been developed to meet the demands in optoelectronic applications over the past years, each of the previously demonstrated methods has one or more limitations and trade-offs in forming multicolor, high-resolution, or large-area patterns of QDs. In this study, we present an alternative QD patterning technique using conventional photolithography combined with charge-assisted layer-by-layer (LbL) assembly to solve the trade-offs of the traditional patterning processes. From our demonstrations, we show repeatable QD patterning process that allows multicolor QD patterns in both large-area and microscale. Also, we show that the QD patterns are robust against additional photolithography processes and that the thickness of the QD patterns can be controlled at each position. To validate that this process can be applied to actual device applications as an active material, we have fabricated inverted, differently colored, active QD light-emitting device (QD-LED) on a pixelated substrate, which achieved maximum electroluminescence intensity of 23 770 cd/m(2), and discussed the results. From our findings, we believe that our process provides a solution to achieving both high-resolution and large-scale QD pattern applicable to not only display, but also to practical photonic device research and development.

  3. Large-Scale Coronal Heating from "Cool" Activity in the Solar Magnetic Network

    NASA Technical Reports Server (NTRS)

    Falconer, D. A.; Moore, R. L.; Porter, J. G.; Hathaway, D. H.

    1999-01-01

    In Fe XII images from SOHO/EIT, the quiet solar corona shows structure on scales ranging from sub-supergranular (i.e., bright points and coronal network) to multi-supergranular (large-scale corona). In Falconer et al 1998 (Ap.J., 501, 386) we suppressed the large-scale background and found that the network-scale features are predominantly rooted in the magnetic network lanes at the boundaries of the supergranules. Taken together, the coronal network emission and bright point emission are only about 5% of the entire quiet solar coronal Fe XII emission. Here we investigate the relationship between the large-scale corona and the network as seen in three different EIT filters (He II, Fe IX-X, and Fe XII). Using the median-brightness contour, we divide the large-scale Fe XII corona into dim and bright halves, and find that the bright-half/dim half brightness ratio is about 1.5. We also find that the bright half relative to the dim half has 10 times greater total bright point Fe XII emission, 3 times greater Fe XII network emission, 2 times greater Fe IX-X network emission, 1.3 times greater He II network emission, and has 1.5 times more magnetic flux. Also, the cooler network (He II) radiates an order of magnitude more energy than the hotter coronal network (Fe IX-X, and Fe XII). From these results we infer that: 1) The heating of the network and the heating of the large-scale corona each increase roughly linearly with the underlying magnetic flux. 2) The production of network coronal bright points and heating of the coronal network each increase nonlinearly with the magnetic flux. 3) The heating of the large-scale corona is driven by widespread cooler network activity rather than by the exceptional network activity that produces the network coronal bright points and the coronal network. 4) The large-scale corona is heated by a nonthermal process since the driver of its heating is cooler than it is. This work was funded by the Solar Physics Branch of NASA's office of

  4. The design for off-axis multimirror optical system with large field and small F number using coaxial assembly of two mirrors

    NASA Astrophysics Data System (ADS)

    Liu, Hui; Yan, Shi-qiang; Pei, Yun-tian; Hu, Lei; Xu, Song

    2012-09-01

    The reflection optical system gets more and more attention nowadays owing to without chromatic aberration and small volume. The manufacturing and assembly/calibration technology for the coaxial reflection optical system is more mature relative to the other reflection optical systems. But the coaxial reflection optical system will obstruct the incidence ray especially when the field is large, which will reduce the energy entering the optical system and reduce the resolution. The off-axis Three-Mirror Optical Systems can conquer those disadvantages of the coaxial reflection optical system, however the manufacturing and assembly/calibration for the off-axis Optical Systems is very difficult which must use computer-aided technology. The manufacturing and assembly/calibration technology is the main bottleneck for the off-axis Optical Systems to the engineering application. The Author of this thesis researched the design theory of the Three-Mirror Optical System, and then schemed out off-axis Three-Mirror and Multi-Mirror Optical System smartly using coaxial two-mirror optical structure which conquers the disadvantage of small field and possesses of the all advantages of the coaxial reflection optical system. This new optical system has two mirrors, one of which is a parabolic mirror with high-order aspheric term and the other is a hyperboloid mirror with high-order aspheric term. The characteristics of this new optical system are as follows: the F Number is 1.25, the field of view is 2°×2° and the total length is only 115mm with coaxial assembly of the two mirrors.

  5. Identification of Rare Recurrent Copy Number Variants in High-Risk Autism Families and Their Prevalence in a Large ASD Population

    PubMed Central

    Christensen, G. Bryce; Kim, Cecilia; Frackelton, Edward; Thomas, Kelly; da Silva, Renata Pellegrino; Stevens, Jeff; Baird, Lisa; Otterud, Brith; Ho, Karen; Varvil, Tena; Leppert, Tami; Lambert, Christophe G.; Leppert, Mark; Hakonarson, Hakon

    2013-01-01

    Structural variation is thought to play a major etiological role in the development of autism spectrum disorders (ASDs), and numerous studies documenting the relevance of copy number variants (CNVs) in ASD have been published since 2006. To determine if large ASD families harbor high-impact CNVs that may have broader impact in the general ASD population, we used the Affymetrix genome-wide human SNP array 6.0 to identify 153 putative autism-specific CNVs present in 55 individuals with ASD from 9 multiplex ASD pedigrees. To evaluate the actual prevalence of these CNVs as well as 185 CNVs reportedly associated with ASD from published studies many of which are insufficiently powered, we designed a custom Illumina array and used it to interrogate these CNVs in 3,000 ASD cases and 6,000 controls. Additional single nucleotide variants (SNVs) on the array identified 25 CNVs that we did not detect in our family studies at the standard SNP array resolution. After molecular validation, our results demonstrated that 15 CNVs identified in high-risk ASD families also were found in two or more ASD cases with odds ratios greater than 2.0, strengthening their support as ASD risk variants. In addition, of the 25 CNVs identified using SNV probes on our custom array, 9 also had odds ratios greater than 2.0, suggesting that these CNVs also are ASD risk variants. Eighteen of the validated CNVs have not been reported previously in individuals with ASD and three have only been observed once. Finally, we confirmed the association of 31 of 185 published ASD-associated CNVs in our dataset with odds ratios greater than 2.0, suggesting they may be of clinical relevance in the evaluation of children with ASDs. Taken together, these data provide strong support for the existence and application of high-impact CNVs in the clinical genetic evaluation of children with ASD. PMID:23341896

  6. Array-Based Comparative Genomic Hybridization Analysis Reveals Chromosomal Copy Number Aberrations Associated with Clinical Outcome in Canine Diffuse Large B-Cell Lymphoma

    PubMed Central

    Bresolin, Silvia; Marconato, Laura; Comazzi, Stefano; Te Kronnie, Geertruy; Aresu, Luca

    2014-01-01

    Canine Diffuse Large B-cell Lymphoma (cDLBCL) is an aggressive cancer with variable clinical response. Despite recent attempts by gene expression profiling to identify the dog as a potential animal model for human DLBCL, this tumor remains biologically heterogeneous with no prognostic biomarkers to predict prognosis. The aim of this work was to identify copy number aberrations (CNAs) by high-resolution array comparative genomic hybridization (aCGH) in 12 dogs with newly diagnosed DLBCL. In a subset of these dogs, the genetic profiles at the end of therapy and at relapse were also assessed. In primary DLBCLs, 90 different genomic imbalances were counted, consisting of 46 gains and 44 losses. Two gains in chr13 were significantly correlated with clinical stage. In addition, specific regions of gains and losses were significantly associated to duration of remission. In primary DLBCLs, individual variability was found, however 14 recurrent CNAs (>30%) were identified. Losses involving IGK, IGL and IGH were always found, and gains along the length of chr13 and chr31 were often observed (>41%). In these segments, MYC, LDHB, HSF1, KIT and PDGFRα are annotated. At the end of therapy, dogs in remission showed four new CNAs, whereas three new CNAs were observed in dogs at relapse compared with the previous profiles. One ex novo CNA, involving TCR, was present in dogs in remission after therapy, possibly induced by the autologous vaccine. Overall, aCGH identified small CNAs associated with outcome, which, along with future expression studies, may reveal target genes relevant to cDLBCL. PMID:25372838

  7. Patterns of Activity in the Human Frontal and Parietal Cortex Differentiate Large and Small Saccades

    PubMed Central

    Grosbras, Marie-Hélène

    2016-01-01

    A vast literature indicates that small and large saccades, respectively, subserve different perceptual and cognitive strategies and may rely on different programming modes. While it is well-established that in monkeys’ main oculomotor brain regions small and large eye movements are controlled by segregated neuronal populations, the representation of saccade amplitude in the human brain remains unclear. To address this question we used functional magnetic resonance imaging to scan participants while they performed saccades toward targets at either short (4°) or large (30°) eccentricity. A regional multivoxel pattern analysis reveals that patterns of activity in the frontal eye-field and parietal eye fields discriminate between the execution of large or small saccades. This was not the case in the supplementary eye-fields nor in the inferior precentral cortex. These findings provide the first evidence of a representation of saccadic eye movement size in the fronto-parietal occulomotor circuit. They shed light on the respective roles of the different cortical oculomotor regions with respect to space perception and exploration, as well as on the homology of eye movement control between human and non-human primates. PMID:27833536

  8. Activating HSP72 in rodent skeletal muscle increases mitochondrial number and oxidative capacity and decreases insulin resistance.

    PubMed

    Henstridge, Darren C; Bruce, Clinton R; Drew, Brian G; Tory, Kálmán; Kolonics, Attila; Estevez, Emma; Chung, Jason; Watson, Nadine; Gardner, Timothy; Lee-Young, Robert S; Connor, Timothy; Watt, Matthew J; Carpenter, Kevin; Hargreaves, Mark; McGee, Sean L; Hevener, Andrea L; Febbraio, Mark A

    2014-06-01

    Induction of heat shock protein (HSP)72 protects against obesity-induced insulin resistance, but the underlying mechanisms are unknown. Here, we show that HSP72 plays a pivotal role in increasing skeletal muscle mitochondrial number and oxidative metabolism. Mice overexpressing HSP72 in skeletal muscle (HSP72Tg) and control wild-type (WT) mice were fed either a chow or high-fat diet (HFD). Despite a similar energy intake when HSP72Tg mice were compared with WT mice, the HFD increased body weight, intramuscular lipid accumulation (triacylglycerol and diacylglycerol but not ceramide), and severe glucose intolerance in WT mice alone. Whole-body VO2, fatty acid oxidation, and endurance running capacity were markedly increased in HSP72Tg mice. Moreover, HSP72Tg mice exhibited an increase in mitochondrial number. In addition, the HSP72 coinducer BGP-15, currently in human clinical trials for type 2 diabetes, also increased mitochondrial number and insulin sensitivity in a rat model of type 2 diabetes. Together, these data identify a novel role for activation of HSP72 in skeletal muscle. Thus, the increased oxidative metabolism associated with activation of HSP72 has potential clinical implications not only for type 2 diabetes but also for other disorders where mitochondrial function is compromised.

  9. Activating HSP72 in Rodent Skeletal Muscle Increases Mitochondrial Number and Oxidative Capacity and Decreases Insulin Resistance

    PubMed Central

    Henstridge, Darren C.; Bruce, Clinton R.; Drew, Brian G.; Tory, Kálmán; Kolonics, Attila; Estevez, Emma; Chung, Jason; Watson, Nadine; Gardner, Timothy; Lee-Young, Robert S.; Connor, Timothy; Watt, Matthew J.; Carpenter, Kevin; Hargreaves, Mark; McGee, Sean L.; Hevener, Andrea L.; Febbraio, Mark A.

    2014-01-01

    Induction of heat shock protein (HSP)72 protects against obesity-induced insulin resistance, but the underlying mechanisms are unknown. Here, we show that HSP72 plays a pivotal role in increasing skeletal muscle mitochondrial number and oxidative metabolism. Mice overexpressing HSP72 in skeletal muscle (HSP72Tg) and control wild-type (WT) mice were fed either a chow or high-fat diet (HFD). Despite a similar energy intake when HSP72Tg mice were compared with WT mice, the HFD increased body weight, intramuscular lipid accumulation (triacylglycerol and diacylglycerol but not ceramide), and severe glucose intolerance in WT mice alone. Whole-body VO2, fatty acid oxidation, and endurance running capacity were markedly increased in HSP72Tg mice. Moreover, HSP72Tg mice exhibited an increase in mitochondrial number. In addition, the HSP72 coinducer BGP-15, currently in human clinical trials for type 2 diabetes, also increased mitochondrial number and insulin sensitivity in a rat model of type 2 diabetes. Together, these data identify a novel role for activation of HSP72 in skeletal muscle. Thus, the increased oxidative metabolism associated with activation of HSP72 has potential clinical implications not only for type 2 diabetes but also for other disorders where mitochondrial function is compromised. PMID:24430435

  10. Modeling activities on the negative-ion-based Neutral Beam Injectors of the Large Helical Device

    SciTech Connect

    Agostinetti, P.; Antoni, V.; Chitarin, G.; Pilan, N.; Serianni, G.; Veltri, P.; Cavenago, M.; Nakano, H.; Takeiri, Y.; Tsumori, K.

    2011-09-26

    At the National Institute for Fusion Science (NIFS) large-scaled negative ion sources have been widely used for the Neutral Beam Injectors (NBIs) mounted on the Large Helical Device (LHD), which is the world-largest superconducting helical system. These injectors have achieved outstanding performances in terms of beam energy, negative-ion current and optics, and represent a reference for the development of heating and current drive NBIs for ITER.In the framework of the support activities for the ITER NBIs, the PRIMA test facility, which includes a RF-drive ion source with 100 keV accelerator (SPIDER) and a complete 1 MeV Neutral Beam system (MITICA) is under construction at Consorzio RFX in Padova.An experimental validation of the codes has been undertaken in order to prove the accuracy of the simulations and the soundness of the SPIDER and MITICA design. To this purpose, the whole set of codes have been applied to the LHD NBIs in a joint activity between Consorzio RFX and NIFS, with the goal of comparing and benchmarking the codes with the experimental data. A description of these modeling activities and a discussion of the main results obtained are reported in this paper.

  11. Evaluation of a large capacity heat pump concept for active cooling of hypersonic aircraft structure

    NASA Technical Reports Server (NTRS)

    Pagel, L. L.; Herring, R. L.

    1978-01-01

    Results of engineering analyses assessing the conceptual feasibility of a large capacity heat pump for enhancing active cooling of hypersonic aircraft structure are presented. A unique heat pump arrangement which permits cooling the structure of a Mach 6 transport to aluminum temperatures without the aid of thermal shielding is described. The selected concept is compatible with the use of conventional refrigerants, with Freon R-11 selected as the preferred refrigerant. Condenser temperatures were limited to levels compatible with the use of conventional refrigerants by incorporating a unique multipass condenser design, which extracts mechanical energy from the hydrogen fuel, prior to each subsequent pass through the condenser. Results show that it is technically feasible to use a large capacity heat pump in lieu of external shielding. Additional analyses are required to optimally apply this concept.

  12. Tracking object number or information load in visual working memory: revisiting the cognitive implication of contralateral delay activity.

    PubMed

    Gao, Zaifeng; Yin, Jun; Xu, Haokui; Shui, Rende; Shen, Mowei

    2011-05-01

    Two accounts prevail for the ERP component contralateral delay activity (CDA). One is that CDA tracks the number of objects stored in visual working memory (VWM), the more objects the higher amplitude (object number account). The other is that CDA reflects the maintained information load (information load account), the higher load the higher amplitude. The two accounts were tested by manipulating the information load and the object number of stored objects. Two or four arrows with low- or high-resolution information were remembered in separate blocks. In two experiments we found that the CDA-amplitude was higher for 4 arrows than for 2 arrows in low-resolution condition, yet no difference in high-resolution condition. Critically, there was no difference on CDA-amplitude among 2 low- and high-resolution objects, as well as 4 high-resolution objects, yet all were significantly lower than 4 low-resolution arrows. These results supported the object number account of CDA.

  13. Introductory Biology Courses: A Framework To Support Active Learning in Large Enrollment Introductory Science Courses

    PubMed Central

    2005-01-01

    Active learning and research-oriented activities have been increasingly used in smaller, specialized science courses. Application of this type of scientific teaching to large enrollment introductory courses has been, however, a major challenge. The general microbiology lecture/laboratory course described has been designed to incorporate published active-learning methods. Three major case studies are used as platforms for active learning. Themes from case studies are integrated into lectures and laboratory experiments, and in class and online discussions and assignments. Students are stimulated to apply facts to problem-solving and to learn research skills such as data analysis, writing, and working in teams. This course is feasible only because of its organizational framework that makes use of teaching teams (made up of faculty, graduate assistants, and undergraduate assistants) and Web-based technology. Technology is a mode of communication, but also a system of course management. The relevance of this model to other biology courses led to assessment and evaluation, including an analysis of student responses to the new course, class performance, a university course evaluation, and retention of course learning. The results are indicative of an increase in student engagement in research-oriented activities and an appreciation of real-world context by students. PMID:15917873

  14. Krüppel-Like Factor 4 Regulates B Cell Number and Activation-Induced B Cell Proliferation1

    PubMed Central

    Klaewsongkram, Jettanong; Yang, Yinhua; Golech, Susanne; Katz, Jonathan; Kaestner, Klaus H.; Weng, Nan-ping

    2008-01-01

    Krüppel-like factor 4 (Klf4) is a transcription factor and functions in regulating cell differentiation, cell growth, and cell cycle. Although Klf4 is expressed in lymphocytes, its function in lymphocytes is unknown. In this study, we report that the levels of Klf4 expression were low in pro-B cells and continuously increased in pre-B and in mature B cells. Upon activation, Klf4 was rapidly decreased in mature B cells after 2 h of activation. A modest decrease in numbers of pre-B cells in bone marrow and mature B cells in spleen was observed in Klf4-deficient mice. In the absence of Klf4, fewer B cells entered the S phase of the cell cycle and completed cell division in response to the engagement of BCR and/or CD40 in vitro. Furthermore, the delay in entering the cell cycle is associated with decreased expression of cyclin D2 in B cells that lack Klf4 expression. We then demonstrated that Klf4 directly bound to the promoter of cyclin D2 and regulated its expression. These findings demonstrate that Klf4 regulates B cell number and activation-induced B cell proliferation through directly acting on the promoter of cyclin D2. PMID:17878366

  15. Multi-shelled ceria hollow spheres with a tunable shell number and thickness and their superior catalytic activity.

    PubMed

    Liao, Yuanyuan; Li, Yuan; Wang, Lei; Zhao, Yongxia; Ma, Danyang; Wang, Biqing; Wan, Yongxia; Zhong, Shengliang

    2017-01-31

    In this work, ceria multi-shelled nanospheres with a tunable shell number and thickness were prepared by a facile coordination polymer (CP) precursor method without the use of any template and surfactant. Interestingly, the number, thickness and structure of the shell can be tuned by varying the reaction time, reaction temperature, ratio of reagent and calcination temperature. The formation process of the multi-shelled hollow spheres was also investigated, which experienced a core contraction and shell separation process. Moreover, the multi-shelled CeO2 hollow nanospheres displayed excellent photocatalytic activity in the degradation of RhB. Au and AuPd nanoparticle loaded multi-shelled CeO2 nanocomposites were also prepared. Results show that Au/CeO2 multi-shelled hollow nanospheres showed eximious catalytic activity for the reduction of p-nitrophenol with a reaction rate constant k of 0.416 min. In addition, AuPd/CeO2 exhibited a remarkable catalytic activity for the conversion of CO. Employing this method, heavy rare earth oxide multi-shelled structures and light rare earth oxide solid spheres were obtained. This method may be employed for the preparation of other materials with complex structures.

  16. Carbon-Nanotubes-Supported Pd Nanoparticles for Alcohol Oxidations in Fuel Cells: Effect of Number of Nanotube Walls on Activity.

    PubMed

    Zhang, Jin; Lu, Shanfu; Xiang, Yan; Shen, Pei Kang; Liu, Jian; Jiang, San Ping

    2015-09-07

    Carbon nanotubes (CNTs) are well known electrocatalyst supports due to their high electrical conductivity, structural stability, and high surface area. Here, we demonstrate that the number of inner tubes or walls of CNTs also have a significant promotion effect on the activity of supported Pd nanoparticles (NPs) for alcohol oxidation reactions of direct alcohol fuel cells (DAFCs). Pd NPs with similar particle size (2.1-2.8 nm) were uniformly assembled on CNTs with different number of walls. The results indicate that Pd NPs supported on triple-walled CNTs (TWNTs) have the highest mass activity and stability for methanol, ethanol, and ethylene glycol oxidation reactions, as compared to Pd NPs supported on single-walled and multi-walled CNTs. Such a specific promotion effect of TWNTs on the electrocatalytic activity of Pd NPs is not related to the contribution of metal impurities in CNTs, oxygen-functional groups of CNTs or surface area of CNTs and Pd NPs. A facile charge transfer mechanism via electron tunneling between the outer wall and inner tubes of CNTs under electrochemical driving force is proposed for the significant promotion effect of TWNTs for the alcohol oxidation reactions in alkaline solutions.

  17. Global Distribution of Cloud Droplet Number Concentration, Autoconversion Rate, and Aerosol Indirect Effect Under Diabatic Droplet Activation

    NASA Technical Reports Server (NTRS)

    Barahona, Donifan; Sotiropoulou, Rafaella; Nenes, Athanasios

    2011-01-01

    This study presents a global assessment of the sensitivity of droplet number to diabatic activation (i.e., including effects from entrainment of dry air) and its first-order tendency on indirect forcing and autoconversion. Simulations were carried out with the NASA Global Modeling Initiative (GMI) atmospheric and transport model using climatological metereorological fields derived from the former NASA Data Assimilation Office (DAO), the NASA Finite volume GCM (FVGCM) and the Goddard Institute for Space Studies version II (GISS) GCM. Cloud droplet number concentration (CDNC) is calculated using a physically based prognostic parameterization that explicitly includes entrainment effects on droplet formation. Diabatic activation results in lower CDNC, compared to adiabatic treatment of the process. The largest decrease in CDNC (by up to 75 percent) was found in the tropics and in zones of moderate CCN concentration. This leads to a global mean effective radius increase between 0.2-0.5 micrometers (up to 3.5 micrometers over the tropics), a global mean autoconversion rate increase by a factor of 1.1 to 1.7 (up to a factor of 4 in the tropics), and a 0.2-0.4 W m(exp -2) decrease in indirect forcing. The spatial patterns of entrainment effects on droplet activation tend to reduce biases in effective radius (particularly in the tropics) when compared to satellite retrievals. Considering the diabatic nature of ambient clouds, entrainment effects on CDNC need to be considered in GCM studies of the aerosol indirect effect.

  18. Systematic detection of seismic activity before recent large earthquakes in China

    NASA Astrophysics Data System (ADS)

    Peng, Z.; Wang, B.; Ruan, X.; Meng, X.; Hongwei, T.; Long, F.; Su, J.

    2014-12-01

    Sometimes large shallow earthquakes are preceded by increased local seismic activity, known as "foreshocks". However, the exact relationship between foreshocks and mainshock nucleation is still in debate. Several studies have found accelerating or migrating foreshock activity right before recent large earthquakes along major plate boundary faults, indicating that foreshocks are likely driven by slow-slip events. However, it is still not
clear whether similar features could be observed for earthquakes that occur away from plate-boundary regions.
Here we conduct a systematic detection of possible foreshock activity around the times of 6 recent large earthquakes in China.
The candidate events include the 2008 Ms7.3 Yutian, Ms8.0 Wenchuan, the 2010 Ms7.0 Yushu,
the 2013 Ms7.0 Lushan, the 2014 Ms7.3 Yutian, and the 2014 Ms6.5 Zhaotong earthquakes. Among them, the 2010 Yushu and 2014 Yutian mainshocks had clear evidence of M4-5 immediate foreshocks listed in regional earthquake catalogs, while the rest
did not. In each case, we use waveforms of local earthquakes listed in the catalog as templates and scan through continuous waveforms recorded by both permanent and temporary seismic stations around the epicentral region of each mainshock. Our waveform matching method can detect at least a few times more events than listed in the catalog. Our initial results show a wide range of behaviors. For the 2010 Yushu and 2014 Yutian cases, the M4-5 foreshocks were followed by many smaller-size events that could be considered as their aftershocks. For the Wenchuan case, we did not observe any obvious foreshock in the immediate vicinity of the epicenter. However, we found one swarm sequence that shows systematic migration a few months before the Wenchuan mainshock. Our next step is to relocate these newly detected events to search for spatio-temporal evolutions before each mainshock, as well
as performing Epidemic Type Aftershock Sequence (ETAS) modeling to examine

  19. Conceiving semi-active control devices for large-size monolithic monuments

    NASA Astrophysics Data System (ADS)

    Casciati, Fabio; El Attar, Adel; Casciati, Sara

    2001-07-01

    CHIME is a research project, funded by the European Union, which investigates the adoption of innovative structural control techniques in view of the seismic rehabilitation of the wide monumental cultural heritage in Mediterranean countries as Egypt, Tunisia and Cyprus. The structural control devices are mainly of the semi-active type. In this particular paper one reports the first results achieved within a case study. It considers an Egyptian large size monolithic monument. Alternative solutions for its seismic rehabilitation are eventually conceived and discussed.

  20. Molecular heterogeneity of large-conductance calcium-activated potassium channels in canine intracardiac ganglia.

    PubMed

    Selga, Elisabet; Pérez-Serra, Alexandra; Moreno-Asso, Alba; Anderson, Seth; Thomas, Kristen; Desai, Mayurika; Brugada, Ramon; Pérez, Guillermo J; Scornik, Fabiana S

    2013-01-01

    Large conductance calcium-activated potassium (BK) channels are widely expressed in the nervous system. We have recently shown that principal neurons from canine intracardiac ganglia (ICG) express a paxilline- and TEA-sensitive BK current, which increases neuronal excitability. In the present work, we further explore the molecular constituents of the BK current in canine ICG. We found that the β1 and β4 regulatory subunits are expressed in ICG. Single channel voltage-dependence at different calcium concentrations suggested that association of the BKα with a particular β subunit was not enough to explain the channel activity in this tissue. Indeed, we detected the presence of several splice variants of the BKα subunit. In conclusion, BK channels in canine ICG may result from the arrangement of different BKα splice variants, plus accessory β subunits. The particular combinations expressed in canine IC neurons likely rule the excitatory role of BK current in this tissue.

  1. Investigating Informatics Activity, Control, and Training Needs in Large, Medium, and Small Health Departments

    PubMed Central

    Arnold, Ryan; Yang, Biru

    2016-01-01

    Introduction: A recent National Association of City & County Health Officials survey shed light on informatics workforce development needs. Local health departments (LHDs) of various jurisdictional sizes and control over informatics may differ on training needs and activity. Understanding the precise nature of this variation will allow stakeholders to appropriately develop workforce development tools to advance the field. Objective: To understand the informatics training needs for LHDs of different jurisdictional sizes. Methods: Survey responses were analyzed by comparing training needs and LHD population size. Results: Larger health departments consistently reported having greater informatics-related capacity and informatics-related training needs. Quantitative data analysis was identified as a primary need for large LHDs. In addition, LHDs that report higher control of informatics/information technology were able to engage in more informatics activities. Conclusion: Smaller LHDs need additional resources to improve informatics-related capacity and engagement with the field. PMID:27684621

  2. Large-scale isolation and cytotoxicity of extracellular vesicles derived from activated human natural killer cells

    PubMed Central

    Jong, Ambrose Y.; Wu, Chun-Hua; Li, Jingbo; Sun, Jianping; Fabbri, Muller; Wayne, Alan S.; Seeger, Robert C.

    2017-01-01

    ABSTRACT Extracellular vesicles (EVs) have been the focus of great interest, as they appear to be involved in numerous important cellular processes. They deliver bioactive macromolecules such as proteins, lipids, and nucleic acids, allowing intercellular communication in multicellular organisms. EVs are secreted by all cell types, including immune cells such as natural killer cells (NK), and they may play important roles in the immune system. Currently, a large-scale procedure to obtain functional NK EVs is lacking, limiting their use clinically. In this report, we present a simple, robust, and cost-effective method to isolate a large quantity of NK EVs. After propagating and activating NK cells ex vivo and then incubating them in exosome-free medium for 48 h, EVs were isolated using a polymer precipitation method. The isolated vesicles contain the tetraspanin CD63, an EV marker, and associated proteins (fibronectin), but are devoid of cytochrome C, a cytoplasmic marker. Nanoparticle tracking analysis showed a size distribution between 100 and 200 nm while transmission electron microscopy imaging displayed vesicles with an oval shape and comparable sizes, fulfilling the definition of EV. Importantly, isolated EV fractions were cytotoxic against cancer cells. Furthermore, our results demonstrate for the first time that isolated activated NK (aNK) cell EVs contain the cytotoxic proteins perforin, granulysin, and granzymes A and B, incorporated from the aNK cells. Activation of caspase -3, -7 and -9 was detected in cancer cells incubated with aNK EVs, and caspase inhibitors blocked aNK EV-induced cytotoxicity, suggesting that aNK EVs activate caspase pathways in target cells. The ability to isolate functional aNK EVs on a large scale may lead to new clinical applications. Abbreviations: NK: natural killer cells; activated NK (aNK) cells; EVs: extracellular vesicles; ALL: acute lymphoblastic leukaemia; aAPC: artificial antigen-presenting cell; TEM: transmission

  3. Seasonal prediction of lightning activity in North Western Venezuela: Large-scale versus local drivers

    NASA Astrophysics Data System (ADS)

    Muñoz, Á. G.; Díaz-Lobatón, J.; Chourio, X.; Stock, M. J.

    2016-05-01

    The Lake Maracaibo Basin in North Western Venezuela has the highest annual lightning rate of any place in the world (~ 200 fl km- 2 yr- 1), whose electrical discharges occasionally impact human and animal lives (e.g., cattle) and frequently affect economic activities like oil and natural gas exploitation. Lightning activity is so common in this region that it has a proper name: Catatumbo Lightning (plural). Although short-term lightning forecasts are now common in different parts of the world, to the best of the authors' knowledge, seasonal prediction of lightning activity is still non-existent. This research discusses the relative role of both large-scale and local climate drivers as modulators of lightning activity in the region, and presents a formal predictability study at seasonal scale. Analysis of the Catatumbo Lightning Regional Mode, defined in terms of the second Empirical Orthogonal Function of monthly Lightning Imaging Sensor (LIS-TRMM) and Optical Transient Detector (OTD) satellite data for North Western South America, permits the identification of potential predictors at seasonal scale via a Canonical Correlation Analysis. Lightning activity in North Western Venezuela responds to well defined sea-surface temperature patterns (e.g., El Niño-Southern Oscillation, Atlantic Meridional Mode) and changes in the low-level meridional wind field that are associated with the Inter-Tropical Convergence Zone migrations, the Caribbean Low Level Jet and tropical cyclone activity, but it is also linked to local drivers like convection triggered by the topographic configuration and the effect of the Maracaibo Basin Nocturnal Low Level Jet. The analysis indicates that at seasonal scale the relative contribution of the large-scale drivers is more important than the local (basin-wide) ones, due to the synoptic control imposed by the former. Furthermore, meridional CAPE transport at 925 mb is identified as the best potential predictor for lightning activity in the Lake

  4. Oxygen-Activated Growth and Bandgap Tunability of Large Single-Crystal Bilayer Graphene

    NASA Astrophysics Data System (ADS)

    Hao, Yufeng; Hone, James; Ruoff, Rodney; Colombo, Luigi; the Hone Group Team

    Distinct from zero-bandgap single-layer graphene, Bernal-stacked bilayer graphene (BLG) is a semiconductor whose bandgap can be tuned by a transverse electric field, making it a unique material for a number of electronic and photonic devices. In this presentation, we will focus on the most recent progress in the identification of new growth mechanisms towards large-area single-layer BLG on Copper: multiple control experiments and first-principles calculations are used to support the proposed mechanisms. We emphasize that trace amount of impurities on metal surface are critical to initiate graphene growth and affect the growth kinetics. Furthermore, contrary to the traditional viewpoint that graphene growth is always surface-limited process, our new observations strongly suggest that metal bulk plays a role to feed carbon species for graphene growth. State-of-the-art structural characterizations and electrical transport measurements of the CVD graphene layers will be presented as well.

  5. Large loop conformation sampling using the activation relaxation technique, ART-nouveau method.

    PubMed

    St-Pierre, Jean-François; Mousseau, Normand

    2012-07-01

    We present an adaptation of the ART-nouveau energy surface sampling method to the problem of loop structure prediction. This method, previously used to study protein folding pathways and peptide aggregation, is well suited to the problem of sampling the conformation space of large loops by targeting probable folding pathways instead of sampling exhaustively that space. The number of sampled conformations needed by ART nouveau to find the global energy minimum for a loop was found to scale linearly with the sequence length of the loop for loops between 8 and about 20 amino acids. Considering the linear scaling dependence of the computation cost on the loop sequence length for sampling new conformations, we estimate the total computational cost of sampling larger loops to scale quadratically compared to the exponential scaling of exhaustive search methods.

  6. Increased numbers of monocyte-derived dendritic cells during successful tumor immunotherapy with immune-activating agents.

    PubMed

    Kuhn, Sabine; Hyde, Evelyn J; Yang, Jianping; Rich, Fenella J; Harper, Jacquie L; Kirman, Joanna R; Ronchese, Franca

    2013-08-15

    Local treatment with selected TLR ligands or bacteria such as bacillus Calmette-Guérin increases antitumor immune responses and delays tumor growth. It is thought that these treatments may act by activating tumor-associated dendritic cells (DCs), thereby supporting the induction of antitumor immune responses. However, common parameters of successful immune activation have not been identified. We used mouse models to compare treatments with different immune-activating agents for the ability to delay tumor growth, improve priming of tumor-specific T cells, and induce early cytokine production and DC activation. Treatment with polyinosinic-polycytidylic acid or a combination of monosodium urate crystals and Mycobacterium smegmatis was effective at delaying the growth of s.c. B16 melanomas, orthotopic 4T1 mammary carcinomas, and reducing 4T1 lung metastases. In contrast, LPS, monosodium urate crystals, or M. smegmatis alone had no activity. Effective treatments required both NK1.1(+) and CD8(+) cells, and resulted in increased T cell priming and the infiltration of NK cells and CD8(+) T cells in tumors. Unexpectedly, both effective and ineffective treatments increased DC numbers and the expression of costimulatory molecules in the tumor-draining lymph node. However, only effective treatments induced the rapid appearance of a population of monocyte-derived DCs in the draining lymph node, early release of IL-12p70 and IFN-γ, and low IL-10 in the serum. These results suggest that the activation of existing DC subsets is not sufficient for the induction of antitumor immune responses, whereas early induction of Th1 cytokines and monocyte-derived DCs are features of successful activation of antitumor immunity.

  7. On the calculation of line strengths, oscillator strengths and lifetimes for very large principal quantum numbers in hydrogenic atoms and ions by the McLean-Watson formula

    NASA Astrophysics Data System (ADS)

    Hey, J. D.

    2014-08-01

    As a sequel to an earlier study (Hey 2009 J. Phys. B: At. Mol. Opt. Phys. 42 125701), we consider further the application of the line strength formula derived by Watson (2006 J. Phys. B: At. Mol. Opt. Phys. 39 L291) to transitions arising from states of very high principal quantum number in hydrogenic atoms and ions (Rydberg-Rydberg transitions, n > 1000). It is shown how apparent difficulties associated with the use of recurrence relations, derived (Hey 2006 J. Phys. B: At. Mol. Opt. Phys. 39 2641) by the ladder operator technique of Infeld and Hull (1951 Rev. Mod. Phys. 23 21), may be eliminated by a very simple numerical device, whereby this method may readily be applied up to n ≈ 10 000. Beyond this range, programming of the method may entail greater care and complexity. The use of the numerically efficient McLean-Watson formula for such cases is again illustrated by the determination of radiative lifetimes and comparison of present results with those from an asymptotic formula. The question of the influence on the results of the omission or inclusion of fine structure is considered by comparison with calculations based on the standard Condon-Shortley line strength formula. Interest in this work on the radial matrix elements for large n and n‧ is related to measurements of radio recombination lines from tenuous space plasmas, e.g. Stepkin et al (2007 Mon. Not. R. Astron. Soc. 374 852), Bell et al (2011 Astrophys. Space Sci. 333 377), to the calculation of electron impact broadening parameters for such spectra (Watson 2006 J. Phys. B: At. Mol. Opt. Phys. 39 1889) and comparison with other theoretical methods (Peach 2014 Adv. Space Res. in press), to the modelling of physical processes in H II regions (Roshi et al 2012 Astrophys. J. 749 49), and the evaluation bound-bound transitions from states of high n during primordial cosmological recombination (Grin and Hirata 2010 Phys. Rev. D 81 083005, Ali-Haïmoud and Hirata 2010 Phys. Rev. D 82 063521, Ali

  8. A large difference in the progenitor masses of active and passive galaxies in the EAGLE simulation

    NASA Astrophysics Data System (ADS)

    Clauwens, Bart; Franx, Marijn; Schaye, Joop

    2016-11-01

    Cumulative number density matching of galaxies is a method to observationally connect descendent galaxies to their typical main progenitors at higher redshifts and thereby to assess the evolution of galaxy properties. The accuracy of this method is limited due to galaxy merging and scatter in the stellar mass growth history of individual galaxies. Behroozi et al. have introduced a refinement of the method, based on abundance matching of observed galaxies to the Bolshoi dark matter-only simulation. The EAGLE cosmological hydrosimulation is well suited to test this method, because it reproduces the observed evolution of the galaxy stellar mass function and the passive fraction. We find agreement with the Behroozi et al. method for the complete sample of main progenitors of z = 0 galaxies, but we also find a strong dependence on the current star formation rate. Passive galaxies with a stellar mass up to 1010.75 M⊙ have a completely different median mass history than active galaxies of the same mass. This difference persists if we only select central galaxies. This means that the cumulative number density method should be applied separately to active and passive galaxies. Even then, the typical main progenitor of a z = 0 galaxy already spans two orders of magnitude in stellar mass at z = 2.

  9. Macro optical projection tomography for large scale 3D imaging of plant structures and gene activity.

    PubMed

    Lee, Karen J I; Calder, Grant M; Hindle, Christopher R; Newman, Jacob L; Robinson, Simon N; Avondo, Jerome J H Y; Coen, Enrico S

    2016-12-26

    Optical projection tomography (OPT) is a well-established method for visualising gene activity in plants and animals. However, a limitation of conventional OPT is that the specimen upper size limit precludes its application to larger structures. To address this problem we constructed a macro version called Macro OPT (M-OPT). We apply M-OPT to 3D live imaging of gene activity in growing whole plants and to visualise structural morphology in large optically cleared plant and insect specimens up to 60 mm tall and 45 mm deep. We also show how M-OPT can be used to image gene expression domains in 3D within fixed tissue and to visualise gene activity in 3D in clones of growing young whole Arabidopsis plants. A further application of M-OPT is to visualise plant-insect interactions. Thus M-OPT provides an effective 3D imaging platform that allows the study of gene activity, internal plant structures and plant-insect interactions at a macroscopic scale.

  10. Chronic active B-cell-receptor signalling in diffuse large B-cell lymphoma.

    PubMed

    Davis, R Eric; Ngo, Vu N; Lenz, Georg; Tolar, Pavel; Young, Ryan M; Romesser, Paul B; Kohlhammer, Holger; Lamy, Laurence; Zhao, Hong; Yang, Yandan; Xu, Weihong; Shaffer, Arthur L; Wright, George; Xiao, Wenming; Powell, John; Jiang, Jian-Kang; Thomas, Craig J; Rosenwald, Andreas; Ott, German; Muller-Hermelink, Hans Konrad; Gascoyne, Randy D; Connors, Joseph M; Johnson, Nathalie A; Rimsza, Lisa M; Campo, Elias; Jaffe, Elaine S; Wilson, Wyndham H; Delabie, Jan; Smeland, Erlend B; Fisher, Richard I; Braziel, Rita M; Tubbs, Raymond R; Cook, J R; Weisenburger, Dennis D; Chan, Wing C; Pierce, Susan K; Staudt, Louis M

    2010-01-07

    A role for B-cell-receptor (BCR) signalling in lymphomagenesis has been inferred by studying immunoglobulin genes in human lymphomas and by engineering mouse models, but genetic and functional evidence for its oncogenic role in human lymphomas is needed. Here we describe a form of 'chronic active' BCR signalling that is required for cell survival in the activated B-cell-like (ABC) subtype of diffuse large B-cell lymphoma (DLBCL). The signalling adaptor CARD11 is required for constitutive NF-kappaB pathway activity and survival in ABC DLBCL. Roughly 10% of ABC DLBCLs have mutant CARD11 isoforms that activate NF-kappaB, but the mechanism that engages wild-type CARD11 in other ABC DLBCLs was unknown. An RNA interference genetic screen revealed that a BCR signalling component, Bruton's tyrosine kinase, is essential for the survival of ABC DLBCLs with wild-type CARD11. In addition, knockdown of proximal BCR subunits (IgM, Ig-kappa, CD79A and CD79B) killed ABC DLBCLs with wild-type CARD11 but not other lymphomas. The BCRs in these ABC DLBCLs formed prominent clusters in the plasma membrane with low diffusion, similarly to BCRs in antigen-stimulated normal B cells. Somatic mutations affecting the immunoreceptor tyrosine-based activation motif (ITAM) signalling modules of CD79B and CD79A were detected frequently in ABC DLBCL biopsy samples but rarely in other DLBCLs and never in Burkitt's lymphoma or mucosa-associated lymphoid tissue lymphoma. In 18% of ABC DLBCLs, one functionally critical residue of CD79B, the first ITAM tyrosine, was mutated. These mutations increased surface BCR expression and attenuated Lyn kinase, a feedback inhibitor of BCR signalling. These findings establish chronic active BCR signalling as a new pathogenetic mechanism in ABC DLBCL, suggesting several therapeutic strategies.

  11. Signatures of large-scale magnetic fields in active galactic nuclei jets: transverse asymmetries

    NASA Astrophysics Data System (ADS)

    Clausen-Brown, E.; Lyutikov, M.; Kharb, P.

    2011-08-01

    We investigate the emission properties that a large-scale helical magnetic field imprints on active galactic nuclei (AGN) jet synchrotron radiation. A cylindrically symmetric relativistic jet and large-scale helical magnetic field produce significant asymmetrical features in transverse profiles of fractional linear polarization, intensity, the Faraday rotation and spectral index. The asymmetrical features of these transverse profiles correlate with one another in ways specified by the handedness of the helical field, the jet viewing angle (θob) and the bulk Lorentz factor of the flow (Γ). Thus, these correlations may be used to determine the structure of the magnetic field in the jet. In the case of radio galaxies (θob˜ 1 rad) and a subclass of blazars with particularly small viewing angles (θob≪ 1/Γ), we find an edge-brightened intensity profile that is similar to that observed in the radio galaxy M87. We present observations of the AGNs 3C 78 and NRAO 140 that display the type of transverse asymmetries that may be produced by large-scale helical magnetic fields.

  12. Active self-testing noise measurement sensors for large-scale environmental sensor networks.

    PubMed

    Domínguez, Federico; Cuong, Nguyen The; Reinoso, Felipe; Touhafi, Abdellah; Steenhaut, Kris

    2013-12-13

    Large-scale noise pollution sensor networks consist of hundreds of spatially distributed microphones that measure environmental noise. These networks provide historical and real-time environmental data to citizens and decision makers and are therefore a key technology to steer environmental policy. However, the high cost of certified environmental microphone sensors render large-scale environmental networks prohibitively expensive. Several environmental network projects have started using off-the-shelf low-cost microphone sensors to reduce their costs, but these sensors have higher failure rates and produce lower quality data. To offset this disadvantage, we developed a low-cost noise sensor that actively checks its condition and indirectly the integrity of the data it produces. The main design concept is to embed a 13 mm speaker in the noise sensor casing and, by regularly scheduling a frequency sweep, estimate the evolution of the microphone's frequency response over time. This paper presents our noise sensor's hardware and software design together with the results of a test deployment in a large-scale environmental network in Belgium. Our middle-range-value sensor (around €50) effectively detected all experienced malfunctions, in laboratory tests and outdoor deployments, with a few false positives. Future improvements could further lower the cost of our sensor below €10.

  13. Active Self-Testing Noise Measurement Sensors for Large-Scale Environmental Sensor Networks

    PubMed Central

    Domínguez, Federico; Cuong, Nguyen The; Reinoso, Felipe; Touhafi, Abdellah; Steenhaut, Kris

    2013-01-01

    Large-scale noise pollution sensor networks consist of hundreds of spatially distributed microphones that measure environmental noise. These networks provide historical and real-time environmental data to citizens and decision makers and are therefore a key technology to steer environmental policy. However, the high cost of certified environmental microphone sensors render large-scale environmental networks prohibitively expensive. Several environmental network projects have started using off-the-shelf low-cost microphone sensors to reduce their costs, but these sensors have higher failure rates and produce lower quality data. To offset this disadvantage, we developed a low-cost noise sensor that actively checks its condition and indirectly the integrity of the data it produces. The main design concept is to embed a 13 mm speaker in the noise sensor casing and, by regularly scheduling a frequency sweep, estimate the evolution of the microphone's frequency response over time. This paper presents our noise sensor's hardware and software design together with the results of a test deployment in a large-scale environmental network in Belgium. Our middle-range-value sensor (around €50) effectively detected all experienced malfunctions, in laboratory tests and outdoor deployments, with a few false positives. Future improvements could further lower the cost of our sensor below €10. PMID:24351634

  14. Synthesis of extremely large mesoporous activated carbon and its unique adsorption for giant molecules

    SciTech Connect

    Tamai, Hisashi; Kakii, Takuhiro; Hirota, Yoshifumi

    1996-02-01

    The steam invigoration of pitches (softening points 85 and 280{degrees}C) homogenized with 1-3 wt% of organo rare0earth metal complexes such as Ln(C{sub 5}H{sub 5}){sub 3} or Ln(acac) (Ln=Y, Yb) at 930{degrees}C provided activated carbons with an extremely high mesopore ration, >70%. The resulted activated carbon selectively adsorbs giant molecules such as Vitamin B{sub 12}, blue acid 90 dye, dextran, nystatin, and humic acid, reflecting their large mesopore volumes. To understand what kind of carbon skeleton in pitch is suited for generation of high mesopore ration, the steam invigoration of a series of condensed polynuclear aromatics (COPNA) resins prepared from naphthlene, anthracene, phenanthrene, pyrene, or perylene and p-xylene-{alpha},{alpha}{prime}-diol were conducted in the presence of rare-earth metal complexes. As a result, COPNA resins containing phenanthrene, perylene, and pyrene generated large mesopore volume. 35 refs., 16 figs., 11 tabs.

  15. Simultaneous Solar Maximum Mission (SMM) and Very Large Array (VLA) observations of solar active regions

    NASA Technical Reports Server (NTRS)

    Willson, Robert F.

    1991-01-01

    Very Large Array observations at 20 cm wavelength can detect the hot coronal plasma previously observed at soft x ray wavelengths. Thermal cyclotron line emission was detected at the apex of coronal loops where the magnetic field strength is relatively constant. Detailed comparison of simultaneous Solar Maximum Mission (SMM) Satellite and VLA data indicate that physical parameters such as electron temperature, electron density, and magnetic field strength can be obtained, but that some coronal loops remain invisible in either spectral domain. The unprecedent spatial resolution of the VLA at 20 cm wavelength showed that the precursor, impulsive, and post-flare components of solar bursts originate in nearby, but separate loops or systems of loops.. In some cases preburst heating and magnetic changes are observed from loops tens of minutes prior to the impulsive phase. Comparisons with soft x ray images and spectra and with hard x ray data specify the magnetic field strength and emission mechanism of flaring coronal loops. At the longer 91 cm wavelength, the VLA detected extensive emission interpreted as a hot 10(exp 5) K interface between cool, dense H alpha filaments and the surrounding hotter, rarefield corona. Observations at 91 cm also provide evidence for time-correlated bursts in active regions on opposite sides of the solar equator; they are attributed to flare triggering by relativistic particles that move along large-scale, otherwise-invisible, magnetic conduits that link active regions in opposite hemispheres of the Sun.

  16. Corrugated paraffin nanocomposite films as large stroke thermal actuators and self-activating thermal interfaces.

    PubMed

    Copic, Davor; Hart, A John

    2015-04-22

    High performance active materials are of rapidly growing interest for applications including soft robotics, microfluidic systems, and morphing composites. In particular, paraffin wax has been used to actuate miniature pumps, solenoid valves, and composite fibers, yet its deployment is typically limited by the need for external volume constraint. We demonstrate that compact, high-performance paraffin actuators can be made by confining paraffin within vertically aligned carbon nanotube (CNT) films. This large-stroke vertical actuation is enabled by strong capillary interaction between paraffin and CNTs and by engineering the CNT morphology by mechanical compression before capillary-driven infiltration of the molten paraffin. The maximum actuation strain of the corrugated CNT-paraffin films (∼0.02-0.2) is comparable to natural muscle, yet the maximum stress is limited to ∼10 kPa by collapse of the CNT network. We also show how a CNT-paraffin film can serve as a self-activating thermal interface that closes a gap when it is heated. These new CNT-paraffin film actuators could be produced by large-area CNT growth, infiltration, and lamination methods, and are attractive for use in miniature systems due to their self-contained design.

  17. Active suspension design for a Large Space Structure ground test facility

    NASA Technical Reports Server (NTRS)

    Lange, Thomas J. H.; Schlegel, Clemens

    1993-01-01

    The expected future high performance requirements for Large Space Structures (LSS) enforce technology innovations such as active vibration damping techniques e.g., by means of structure sensors and actuators. The implementation of new technologies like that requires an interactive and integrated structural and control design with an increased effort in hardware validation by ground testing. During the technology development phase generic system tests will be most important covering verification and validation aspects up to the preparation and definition of relevant space experiments. For many applications using advanced designs it is deemed necessary to improve existing testing technology by further reducing disturbances and gravity coupling effects while maintaining high performance reliability. A key issue in this context is the improvement of suspension techniques. The ideal ground test facility satisfying these requirements completely will never be found. The highest degree of reliability will always be obtained by passive suspension methods taking into account severe performance limitations such as non-zero rigid body modes, restriction of degrees of freedom of motion and frequency response limitations. Passive compensation mechanisms, e.g., zero-spring-rate mechanisms, either require large moving masses or they are limited with respect to low-frequency performance by friction, stiction or other non-linear effects. With active suspensions these limitations can be removed to a large extent thereby increasing the range of applications. Despite an additional complexity which is associated with a potential risk in reliability their development is considered promising due to the amazing improvement of real-time control technology which is still continuing.

  18. Increasing ocean temperatures reduce activity patterns of a large commercially important coral reef fish.

    PubMed

    Johansen, J L; Messmer, V; Coker, D J; Hoey, A S; Pratchett, M S

    2014-04-01

    Large-bodied fish are critical for sustaining coral reef fisheries, but little is known about the vulnerability of these fish to global warming. This study examined the effects of elevated temperatures on the movement and activity patterns of the common coral trout Plectropomus leopardus (Serranidae), which is an important fishery species in tropical Australia and throughout the Indo West-Pacific. Adult fish were collected from two locations on Australia's Great Barrier Reef (23°S and 14°S) and maintained at one of four temperatures (24, 27, 30, 33 °C). Following >4 weeks acclimation, the spontaneous swimming speeds and activity patterns of individuals were recorded over a period of 12 days. At 24-27 °C, spontaneous swimming speeds of common coral trout were 0.43-0.45 body lengths per second (bls(-1)), but dropped sharply to 0.29 bls(-1) at 30 °C and 0.25 bls(-1) at 33 °C. Concurrently, individuals spent 9.3-10.6% of their time resting motionless on the bottom at 24-27 °C, but this behaviour increased to 14.0% at 30 °C and 20.0% of the time at 33 °C (mean ± SE). The impact of temperature was greatest for smaller individuals (<45 cm TL), showing significant changes to swimming speeds across every temperature tested, while medium (45-55 cm TL) and large individuals (>55 cm TL) were first affected by 30 °C and 33 °C, respectively. Importantly, there was some indication that populations can adapt to elevated temperature if presented with adequate time, as the high-latitude population decreased significantly in swimming speeds at both 30 °C and 33 °C, while the low-latitude population only showed significant reductions at 33 °C. Given that movement and activity patterns of large mobile species are directly related to prey encounter rates, ability to capture prey and avoid predators, any reductions in activity patterns are likely to reduce overall foraging and energy intake, limit the energy available for growth and reproduction, and affect the fitness and

  19. Daily dynamics of the number and activity of nitrogen-fixing bacteria in fallow and intensely cultivated soils

    NASA Astrophysics Data System (ADS)

    Emer, N. R.; Semenov, A. M.; Zelenev, V. V.; Zinyakova, N. B.; Kostina, N. V.; Golichenkov, M. V.

    2014-08-01

    The daily dynamics (during 33 days) of the number (colony-forming units (CFU)) of nitrogen-fixing bacteria and of the nitrogen-fixing activity (the acetylene method) were determined in a gray forest soil under a fallow land and under an intensely cultivated field. The daily dynamics of the CFUs determined on the nitrogen-free medium in the samples from both plots had wavelike patterns. The daily values of the actual and potential activities of nitrogen fixation in the samples from the fallow land plot and of the actual activity of nitrogen fixation in the samples from the intensely cultivated soil were low and close to the detection limit. The potential activity of nitrogen fixation in the intensely cultivated soil was significant and also had a wavelike pattern. The harmonic analysis of the daily dynamics of the CFUs and nitrogen fixation showed the statistically significant harmonics of these biological characteristics pointing to the objective and regular character of the wavelike dynamics. The revealed dynamics of the biological characteristics of the soils and the methods of their analysis are important in terms of the comparative study of the biological properties of different soils.

  20. The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates.

    PubMed Central

    Ko, M S; Nakauchi, H; Takahashi, N

    1990-01-01

    Glucocorticoid hormones induce the transcription of genes having glucocorticoid response elements in a dose dependent manner. To determine whether this dose dependence represents a response of individual templates or of the mass of templates, we introduced a bacterial beta-galactosidase gene linked to the glucocorticoid-inducible enhancer/promoter of the mouse mammary tumor virus (MTV) into Ltk- cells and obtained stable transformants containing a single or a few templates per cell. Visual inspection and flow cytometry analysis by enzyme histochemistry assay for beta-galactosidase revealed that individual cells showed very heterogeneous beta-galactosidase activity after 48 h induction with dexamethasone. When the glucocorticoid concentration was increased, an increasing cell population producing beta-galactosidase was observed. These phenomena were probably not due to heterogeneity of template copy number or to a predetermined cellular state among individual cells, since cells forming a single small colony gave similar results. This was also supported by data showing that recloned cells retained both their responsiveness to the glucocorticoid hormone and their digestion pattern in Southern blotting analyses. These results indicate that the dose dependent increase of glucocorticoid-inducible gene expression is caused by an increase in the number of transcriptionally active templates. Images Fig. 1. Fig. 3. Fig. 4. Fig. 5. Fig. 8. PMID:2167833