Science.gov

Sample records for activating sequence uas

  1. Isolation and Identification of Genes Activating Uas2-Dependent Adh2 Expression in Saccharomyces Cerevisiae

    PubMed Central

    Donoviel, M. S.; Young, E. T.

    1996-01-01

    Two cis-acting elements have been identified that act synergistically to regulate expression of the glucose-repressed alcohol dehydrogenase 2 (ADH2) gene. UAS1 is bound by the trans-activator Adr1p. UAS2 is thought to be the binding site for an unidentified regulatory protein. A genetic selection based on a UAS2-dependent ADH2 reporter was devised to isolate genes capable of activating UAS2-dependent transcription. One set of UAS2-dependent genes contained SPT6/CRE2/SSN20. Multicopy SPT6 caused improper expression of chromosomal ADH2. A second set of UAS2-dependent clones contained a previously uncharacterized open reading frame designated MEU1 (Multicopy Enhancer of UAS2). A frame shift mutation in MEU1 abolished its ability to activate UAS2-dependent gene expression. Multicopy MEU1 expression suppressed the constitutive ADH2 expression caused by cre2-1. Disruption of MEU1 reduced endogenous ADH2 expression about twofold but had no effect on cell viability or growth. No homologues of MEU1 were identified by low-stringency Southern hybridization of yeast genomic DNA, and no significant homologues were found in the sequence data bases. A MEU1/β-gal fusion protein was not localized to a particular region of the cell. MEU1 is linked to PPR1 on chromosome XII. PMID:8807288

  2. NASA's UAS [Unmanned Aircraft Systems] Related Activities

    NASA Technical Reports Server (NTRS)

    Bauer, Jeffrey

    2012-01-01

    NASA continues to operate all sizes of UAS in all classes of airspace both domestically and internationally. Missions range from highly complex operations in coordination with piloted aircraft, ground, and space systems in support of science objectives to single aircraft operations in support of aeronautics research. One such example is a scaled commercial transport aircraft being used to study recovery techniques due to large upsets. NASA's efforts to support routine UAS operations continued on several fronts last year. At the national level in the United States (U.S.), NASA continued its support of the UAS Executive Committee (ExCom) comprised of the Federal Aviation Administration (FAA), Department of Defense (DoD), Department of Homeland Security (DHS), and NASA. The committee was formed in recognition of the need of UAS operated by these agencies to access to the National Airspace System (NAS) to support operational, training, development and research requirements. Recommendations were received on how to operate both manned and unmanned aircraft in class D airspace and plans are being developed to validate and implement those recommendations. In addition the UAS ExCom has begun developing recommendations for how to achieve routine operations in remote areas as well as for small UAS operations in class G airspace. As well as supporting the UAS ExCom, NASA is a participant in the recently formed Aviation Rule Making Committee for UAS. This committee, established by the FAA, is intended to propose regulatory guidance which would enable routine civil UAS operations. As that effort matures NASA stands ready to supply the necessary technical expertise to help that committee achieve its objectives. By supporting both the UAS ExCom and UAS ARC, NASA is positioned to provide its technical expertise across the full spectrum of UAS airspace access related topic areas. The UAS NAS Access Project got underway this past year under the leadership of NASA s Aeronautics

  3. UAS Related Activities at NASA's Dryden Flight Research Center

    NASA Technical Reports Server (NTRS)

    Bauer, Jeffrey E.

    2009-01-01

    NASA s Dryden Flight Research Center is completing its refurbishment and initial flights of one the pre-production Global Hawk aircraft it received from the U.S. Air Force. NASA Dryden has an agreement with the Global Hawk s manufacturer, Northrop Grumman, to partner in the refurbishment and flight operations of the vehicles. The National Oceanic and Atmospheric Administration (NOAA) has also partnered on the project and is assisting NASA with project management and pilot responsibilities for the aircraft. NASA and NOAA will be using the Global Hawks to conduct earth science research. The earth science community is increasing utilizing UAS of all sizes and capabilities to collect important data on a variety of issues including important global climate change issues. To pursue the data collection needs of the science community there is a growing demand for international collaboration with respect to operating UAS in global airspace. Operations of NASA s Ikhana aircraft continued this past year. The Ikhana is a modified Predator B UAS. A UAS dedicated to research at NASA Dryden is the X-48B blended wing body research aircraft. Flight tests with the 500- pound, remotely piloted test vehicle are now in a block 4 phase involving parameter identification and maneuvers to research the limits of the engine in stall situations. NASA s participation in the blended wing body research effort is focused on fundamental, advanced flight dynamics and structural design concepts within the Subsonic Fixed Wing project, part of the Fundamental Aeronautics program managed through NASA s Aeronautics Research Mission Directorate. Potential benefits of the aircraft include increased volume for carrying capacity, efficient aerodynamics for reduced fuel burn and possibly significant reductions in noise due to propulsion integration options. NASA Dryden continues to support the UAS industry by facilitating access to three specially designated test areas on Edwards Air Force Base for the

  4. Unmanned aircraft systems (UAS) activities at the Department of the Interior

    USGS Publications Warehouse

    Quirk, Bruce K.; Hutt, Michael E.

    2014-01-01

    The U.S. Department of the Interior (DOI) is responsible for protecting and managing the natural resources and heritage on almost 20% of the land in the United States. The DOI’s mission requires access to remotely sensed data over vast lands, including areas that are remote and potentially dangerous to access. Unmanned Aircraft Systems (UAS) technology has the potential to enable the DOI to be a better steward of the land by: (1) Improving natural hazard forecasting and the analysis of the impacts. (2) Improving the understanding of climate change to better plan for likely impacts. (3) Developing precipitation and evaporation forecasting to better manage water resources. (4) Monitoring Arctic ice change and its impacts on ecosystems, coasts, and transportation. (5) Increasing safety and effectiveness of wildland fire management. (6) Enhancing search and rescue capabilities. (7) Broadening the abilities to monitor environmental or landscape conditions and changes. (8) Better understanding and protecting the Nation’s ecosystems. The initial operational testing and evaluations performed by the DOI have proven that UAS technology can be used to support many of the Department’s activities. UAS technology provides scientists a way to look longer, closer and more frequently at some of Earth’s most remote areas—places that were previously too dangerous or expensive to monitor in detail. The flexibility of operations and relative low cost to purchase and operate Small Unmanned Aerial System (sUAS) enhances the ability to track long-term landscape and environmental change. The initial testing indicates the operational costs are approximately 10% of traditional manned aircraft. In addition, users can quickly assess landscape-altering events such as wildland fires, floods and volcanoes. UAS technology will allow the DOI to do more with less and in the process enhance the Department’s ability to provide unbiased scientific information to help stakeholders make

  5. The yeast protein Gcr1p binds to the PGK UAS and contributes to the activation of transcription of the PGK gene.

    PubMed

    Henry, Y A; López, M C; Gibbs, J M; Chambers, A; Kingsman, S M; Baker, H V; Stanway, C A

    1994-11-15

    Analysis of the upstream activation sequence (UAS) of the yeast phosphoglycerate kinase gene (PGK) has demonstrated that a number of sequence elements are involved in its activity and two of these sequences are bound by the multifunctional factors Rap1p and Abf1p. In this report we show by in vivo footprinting that the regulatory factor encoded by GCR1 binds to two elements in the 3' half of the PGK UAS. These elements contain the sequence CTTCC, which was previously suggested to be important for the activity of the PGK UAS and has been shown to be able to bind Gcr1p in vitro. Furthermore, we find that Gcr1p positively influences PGK transcription, although it is not responsible for the carbon source dependent regulation of PGK mRNA synthesis. In order to mediate its transcriptional influence we find that Gcr1p requires the Rap1p binding site, in addition to its own, but not the Abf1p site. As neither a Rap1p nor a Gcr1p binding site alone is able to activate transcription, we propose that Gcr1p and Rap1p interact in an interdependent fashion to activate PGK transcription. PMID:7808400

  6. NASA's UAS Integration into the NAS: A Report on the Human Systems Integration Phase 1 Simulation Activities

    NASA Technical Reports Server (NTRS)

    Fern, Lisa; Rorie, R. Conrad; Shively, R. Jay

    2014-01-01

    In 2011 the National Aeronautics and Space Administration (NASA) began a five-year Project to address the technical barriers related to routine access of Unmanned Aerial Systems (UAS) in the National Airspace System (NAS). Planned in two phases, the goal of the first phase was to lay the foundations for the Project by identifying those barriers and key issues to be addressed to achieve integration. Phase 1 activities were completed two years into the five-year Project. The purpose of this paper is to review activities within the Human Systems Integration (HSI) subproject in Phase 1 toward its two objectives: 1) develop GCS guidelines for routine UAS access to the NAS, and 2) develop a prototype display suite within an existing Ground Control Station (GCS). The first objective directly addresses a critical barrier for UAS integration into the NAS - a lack of GCS design standards or requirements. First, the paper describes the initial development of a prototype GCS display suite and supporting simulation software capabilities. Then, three simulation experiments utilizing this simulation architecture are summarized. The first experiment sought to determine a baseline performance of UAS pilots operating in civil airspace under current instrument flight rules for manned aircraft. The second experiment examined the effect of currently employed UAS contingency procedures on Air Traffic Control (ATC) participants. The third experiment compared three GCS command and control interfaces on UAS pilot response times in compliance with ATC clearances. The authors discuss how the results of these and future simulation and flight-testing activities contribute to the development of GCS guidelines to support the safe integration of UAS into the NAS. Finally, the planned activities for Phase 2, including an integrated human-in-the-loop simulation and two flight tests are briefly described.

  7. The sequence and binding specificity of UaY, the specific regulator of the purine utilization pathway in Aspergillus nidulans, suggest an evolutionary relationship with the PPR1 protein of Saccharomyces cerevisiae.

    PubMed Central

    Suárez, T; de Queiroz, M V; Oestreicher, N; Scazzocchio, C

    1995-01-01

    The uaY gene codes for a transcriptional activator mediating the induction of a number of unlinked genes involved in purine utilization in Aspergillus nidulans. Here we present the complete genomic and cDNA nucleotide sequence of this gene. The gene contains two introns. The derived polypeptide of 1060 residues contains a typical zinc binuclear cluster domain and shows a number of similarities with the PPR1 regulatory gene of Saccharomyces cerevisiae. These similarities are most striking in the putative linker and dimerization regions following the zinc cluster. Gel-shift and DNase I footprinting experiments have been carried out for three genes subject to UaY-mediated induction. The binding sequence is 5'-TCGG-6X-CCGA, which is identical to the proposed PPR1 binding sites. Nevertheless, the identity of the base immediately 3' of the 5'-TCGG sequence clearly affects the affinity of the site. The site upstream of the uapA gene has been shown to be active in vivo. Binding to this site has been analysed by a number of interference techniques. There is an interesting chemical similarity between the co-inducer of the purine utilization pathway (uric acid) and that of the genes of the pyrimidine biosynthetic pathway (dihydroorotic acid) and we show that dihydroorotic acid can act as a poor inducer of at least one activity under UaY control. These striking similarities, together with the unique pattern of regulation of pyrimidine biosynthesis in S. cerevisiae, suggest that PPR1 evolved through recruitment into the pyrimidine biosynthetic pathway of an ancestral gene related to uaY. Images PMID:7729421

  8. Overlapping activator sequences determined for two oppositely oriented promoters in halophilic Archaea

    PubMed Central

    Bauer, Martina; Marschaus, Larissa; Reuff, Muriel; Besche, Verena; Sartorius-Neef, Simone; Pfeifer, Felicitas

    2008-01-01

    Transcription of the genomic region involved in gas vesicle formation in Halobacterium salinarum (p-vac) and Haloferax mediterranei (mc-vac) is driven by two divergent promoters, PA and PD, separated by only 35 nt. Both promoters are activated by the transcription activator GvpE which in the case of PmcA requires a 20-nt sequence (UAS) consisting of two conserved 8-nt sequence portions located upstream of BRE. Here, we determined the two UAS elements in the promoter region of p-vac by scanning mutageneses using constructs containing PpD (without PpA) fused to the bgaH reporter gene encoding an enzyme with β-galactosidase activity, or the dual reporter construct pApD with PpD fused to bgaH and PpA to an altered version of gvpA. The two UAS elements found exhibited a similar extension and distance to BRE as previously determined for the UAS in PmcA. Their distal 8-nt portions almost completely overlapped in the centre of PpD–PpA, and mutations in this region negatively affected the GvpE-mediated activation of both promoters. Any alteration of the distance between BRE and UAS resulted in the loss of the GvpE activation, as did a complete substitution of the proximal 8-nt portion, underlining that a close location of UAS and BRE was very important. PMID:18056077

  9. Data Management And Pre-Archival Activities For A Complex UAS Project In The Arctic

    NASA Astrophysics Data System (ADS)

    Heinrichs, J. F.; Tschudi, M. A.; Norman, J.; Schultz, S.

    2013-12-01

    The Marginal Ice Zone Observations and Processes EXperiment (MIZOPEX) had the objective of employing UASs to study ocean-ice interactions in the Beaufort Sea. The aircraft operated from Oliktok Point in Alaska during July and August 2013. The project team included representatives of several different institutions widely dispersed geographically. Mission planning activities used multiple tools including the Waypoint Planning Tool (WPT) developed by NASA Ames and a combination of vector and raster datasets to support development of flight plans. Flight planning datasets were downloaded and visualizations created for WPT and Google Earth using an automated tool running remotely from the field site. Data collected during the project included both image and non-image data from 16 different instruments with varying spatial coverage and resolution. UAS data volumes were large (on the order of 3-4 Tb per flight) and the datasets were delivered shortly after flight using a wide variety of media types. The data management portion of the project included acquisition of imagery for planning, capturing the flight sensor data, preliminary processing, and compilation of metadata for archival at the National Snow and Ice Data Center.

  10. Life Science Start-up Activities at the Universities of Applied Sciences (UAS).

    PubMed

    Huber, Gerda

    2014-12-01

    The universities of applied sciences (UAS) provide several values for the society and economy of a country. Besides education of high level professionals, transfer of knowledge from research to applications in industry or as new start-up companies is an important task. This is done in different ways in the various disciplines. In Life Sciences, a key industry branch in Switzerland, innovation is a competitive success factor and research findings from UAS/Life Sciences contribute to the valorization of new technologies to products, services and to business performance. In order to foster awareness for the innovation need of industry, UAS install processes and support for transfer of research and technology results to marketable applications. Furthermore they may facilitate contacts of researchers and students with entrepreneurs in order to animate start-up founding as a true alternative to being employed. Access to coaching and entrepreneurial training completes the essential basis. PMID:26508606

  11. Analysis of Radioactive Releases During Proposed Demolition Activities for the 224-U and 224-UA Buildings

    SciTech Connect

    Napier, Bruce A.; Rishel, Jeremy P.; Droppo, James G.

    2009-03-31

    Atmospheric dispersion modeling has been conducted in support of the demolition of the 224-U and 224-UA buildings using estimated release rates to provide information on the location and levels of radioactive contamination that may be expected. The facilities surrounding the UO3 plant have the potential to affect dispersion patterns through various meteorological phenomena, including building wake effects. Hourly meteorological data collected over a 5-year period were used to examine the effects of wind speed, direction, and stability on projected concentrations of contaminants in air and deposited on nearby surfaces. The modeling results indicate that the radiological exposures from the planned demolition efforts will be below the designated limits for air and soil exposures.

  12. Analysis of Radioactive Releases During Proposed Demolition Activities for the 224-U and 224-UA Buildings - Addendum

    SciTech Connect

    Napier, Bruce A.; Rishel, Jeremy P.; Droppo, James G.; Joyce, Kevin E.; Strom, Daniel J.

    2010-12-21

    A post-demolition modeling analysis is conducted that compares during-demolition atmospheric concentration monitoring results with modeling results based on the actual meteorological conditions during the demolition activities. The 224-U and 224-UA Buildings that were located in the U-Plant UO3 complex in the 200 West Area of the Hanford Site were demolished during the summer of 2010. These facilities converted uranyl nitrate hexahydrate (UNH), a product of Hanford’s Plutonium-Uranium Extraction (PUREX) Plant, into uranium trioxide (UO3). This report is an addendum to a pre-demolition emission analysis and air dispersion modeling effort that was conducted for proposed demolition activities for these structures.

  13. The DNA-binding domain of the transcriptional activator protein NifA resides in its carboxy terminus, recognises the upstream activator sequences of nif promoters and can be separated from the positive control function of NifA.

    PubMed Central

    Morett, E; Cannon, W; Buck, M

    1988-01-01

    The positive control protein NifA activates transcription of nitrogen fixation promoters in Klebsiella pneumoniae. NifA is believed to bind to specific sites, the upstream activator sequences (UAS's), of the nif promoters which it activates. We have now shown by mutation of the carboxy terminus of NifA that this is the DNA-binding domain and that the DNA-binding and positive activator functions of NifA can be separated. Mutational analysis of the nifH UAS and in vivo methylation protection analysis of the interaction of NifA with the nifH promoter demonstrates that the UAS is recognised by the carboxy terminus of NifA. The UAS's of K. pneumoniae nif promoters are also required for activation by the Rhizobium meliloti NifA indicating that this activator also possesses DNA-binding activity. Images PMID:3062575

  14. NASA's UAS NAS Access Project

    NASA Technical Reports Server (NTRS)

    Johnson, Charles W.

    2011-01-01

    The vision of the Unmanned Aircraft System (UAS) Integration in the National Airspace System (NAS) Project is "A global transportation system which allows routine access for all classes of UAS." The goal of the UAS Integration in the NAS Project is to "contribute capabilities that reduce technical barriers related to the safety and operational challenges associated with enabling routine UAS access to the NAS." This goal will be accomplished through a two-phased approach based on development of system-level integration of key concepts, technologies and/or procedures, and demonstrations of integrated capabilities in an operationally relevant environment. Phase 1 will take place the first two years of the Project and Phase 2 will take place the following three years. The Phase 1 and 2 technical objectives are: Phase 1: Developing a gap analysis between current state of the art and the Next Generation Air Transportation System (NextGen) UAS Concept of Operations . Validating the key technical areas identified by this Project . Conducting initial modeling, simulation, and flight testing activities . Completing Sub-project Phase 1 deliverables (spectrum requirements, comparative analysis of certification methodologies, etc.) and continue Phase 2 preparation (infrastructure, tools, etc.) Phase 2: Providing regulators with a methodology for developing airworthiness requirements for UAS, and data to support development of certifications standards and regulatory guidance . Providing systems-level, integrated testing of concepts and/or capabilities that address barriers to routine access to the NAS. Through simulation and flight testing, address issues including separation assurance, communications requirements, and human systems integration in operationally relevant environments. The UAS in the NAS Project will demonstrate solutions in specific technology areas, which will address operational/safety issues related to UAS access to the NAS. Since the resource allocation for

  15. NASA UAS Update

    NASA Technical Reports Server (NTRS)

    Bauer, Jeffrey Ervin; Mulac, Brenda Lynn

    2010-01-01

    Last year may prove to be a pivotal year for the National Aeronautics and Space Administration (NASA) in the Unmanned Aircraft Systems (UAS) arena, especially in relation to routine UAS access to airspace as NASA accepted an invitation to join the UAS Executive Committee (UAS ExCom). The UAS ExCom is a multi-agency, Federal executive-level committee comprised of the Federal Aviation Administration (FAA), Department of Defense (DoD), Department of Homeland Security (DHS), and NASA with the goals to: 1) Coordinate and align efforts between key Federal Government agencies to achieve routine safe federal public UAS operations in the National Airspace System (NAS); 2) Coordinate and prioritize technical, procedural, regulatory, and policy solutions needed to deliver incremental capabilities; 3) Develop a plan to accommodate the larger stakeholder community at the appropriate time; and 4) Resolve conflicts between Federal Government agencies (FAA, DoD, DHS, and NASA), related to the above goals. The committee was formed in recognition of the need of UAS operated by these agencies to access to the National Airspace System (NAS) to support operational, training, development and research requirements. In order to meet that need, technical, procedural, regulatory, and policy solutions are required to deliver incremental capabilities leading to routine access. The formation of the UAS ExCom is significant in that it represents a tangible commitment by FAA senior leadership to address the UAS access challenge. While the focus of the ExCom is government owned and operated UAS, civil UAS operations are bound to benefit by the progress made in achieving routine access for government UAS. As the UAS ExCom was forming, NASA's Aeronautics Research Mission Directorate began to show renewed interest in UAS, particularly in relation to the future state of the air transportation system under the Next Generation Air Transportation System (NextGen). NASA made funding from the American

  16. UA in Review, 1999.

    ERIC Educational Resources Information Center

    Pitney, Pat; Dupee, Betty; Reid, James; Meckel, Steven; Tissier, Isabelle; Gillispie, Juli; Armstrong, Linda; Crabb, Michael; Cook, Linda

    This document provides statistics that describe the University of Alaska (UA) statewide system of higher education, which encompasses 4-year institutions and community and 2-year colleges. The student profile information includes: (1) headcount by campus, gender and ethnicity; (2) part-time/full-time student enrollment; (3) non-credit student…

  17. Interactions of purified transcription factors: binding of yeast MAT alpha 1 and PRTF to cell type-specific, upstream activating sequences.

    PubMed Central

    Tan, S; Ammerer, G; Richmond, T J

    1988-01-01

    Pheromone receptor transcription factor (PRTF) and MAT alpha 1 are protein transcription factors that are involved in the regulation of the alpha-specific genes in Saccharomyces cerevisiae. We have expressed MAT alpha 1 as a fusion protein in Escherichia coli and purified it from inclusion bodies in milligram quantities. The MAT alpha 1 protein was obtained after specific cleavage of the fusion protein. Quantitative band shift electrophoresis was used to determine the equilibrium dissociation constants that describe the multicomponent binding equilibrium between the PRTF and MAT alpha 1 proteins, and alpha-specific STE3 upstream activating sequence (UAS) DNA. The dissociation constant for the complex of PRTF and the a-specific UAS of STE2 was also measured and found to be 5.9 X 10(-11) M, only three times less than that for the PRTF-STE3 UAS complex. Analyses of these complexes by DNase I footprinting demonstrate that the PRTF binding site is confined to the palindromic P-box sequence in the case of the STE3 UAS, but extends symmetrically from this central region to cover 28 bp for the STE2 UAS. When MAT alpha 1 is bound to the PRTF-STE3 complex, the region of DNA protected is enlarged to that seen for the PRTF-STE2 complex. Our results using these two purified factors in vitro suggest that PRTF has nearly the same affinity for a- and alpha-specific UAS elements and that transcriptional activation requires a particular conformational state for the PRTF-DNA complex which occurs in the PRTF-STE2 and MAT alpha 1-PRTF-STE3 complexes, but not in the PRTF-STE3 complex. Images PMID:2854061

  18. Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain

    PubMed Central

    Mendiratta, Geetu; Eriksson, Peter R.; Clark, David J.

    2007-01-01

    The yeast Spt10p activator is a putative histone acetyltransferase (HAT) possessing a sequence-specific DNA-binding domain (DBD) which binds to the upstream activation sequences (UAS elements) in the histone gene promoters. Spt10p binds to a pair of histone UAS elements with extreme positive cooperativity. The molecular basis of this cooperativity was addressed. Spt10p (640 residues) is an elongated dimer, but the isolated DBD (residues 283–396) is a monomer and binds non-cooperatively to DNA. A Spt10p fragment comprising the N-terminal domain (NTD), HAT domain and DBD (residues 1–396) binds cooperatively and is a dimer, whereas an overlapping Spt10p fragment comprising the DBD and C-terminal domains (residues 283–640) binds non-cooperatively and is a monomer. These observations imply that cooperative binding requires dimerization. The isolated NTD (residues 1–98) is a dimer and is responsible for dimerization. We propose that cooperativity involves a conformational change in the Spt10p dimer which facilitates the simultaneous recognition of two UAS elements. In vivo, deletion of the NTD results in poor growth, but does not prevent the binding at the HTA1 promoter, suggesting that dimerization is biologically important. Residues 1–396 are sufficient for normal growth, indicating that the critical functions of Spt10p reside in the N-terminal domains. PMID:17202156

  19. The UAS control segment architecture: an overview

    NASA Astrophysics Data System (ADS)

    Gregory, Douglas A.; Batavia, Parag; Coats, Mark; Allport, Chris; Jennings, Ann; Ernst, Richard

    2013-05-01

    The Under Secretary of Defense (Acquisition, Technology and Logistics) directed the Services in 2009 to jointly develop and demonstrate a common architecture for command and control of Department of Defense (DoD) Unmanned Aircraft Systems (UAS) Groups 2 through 5. The UAS Control Segment (UCS) Architecture is an architecture framework for specifying and designing the softwareintensive capabilities of current and emerging UCS systems in the DoD inventory. The UCS Architecture is based on Service Oriented Architecture (SOA) principles that will be adopted by each of the Services as a common basis for acquiring, integrating, and extending the capabilities of the UAS Control Segment. The UAS Task Force established the UCS Working Group to develop and support the UCS Architecture. The Working Group currently has over three hundred members, and is open to qualified representatives from DoD-approved defense contractors, academia, and the Government. The UCS Architecture is currently at Release 2.2, with Release 3.0 planned for July 2013. This paper discusses the current and planned elements of the UCS Architecture, and related activities of the UCS Community of Interest.

  20. UAS Integration in the NAS Project - FY 14 Annual Review

    NASA Technical Reports Server (NTRS)

    Grindle, Laurie; Randall, Debra; Hackenberg, Davis

    2014-01-01

    This briefing gives insight into the research activities and efforts being executed in order to integrate unmanned aircraft systems into the national airspace system. This briefing is to inform others of the UAS-NAS Projects progress and future directions.

  1. UAS Integration in the NAS FY15 Annual Review

    NASA Technical Reports Server (NTRS)

    Grindle, Laurie; Randall, Debra; Hackenburg, Davis

    2015-01-01

    This presentation gives insight into the research activities and efforts being executed in order to integrate unmanned aircraft systems into the national airspace system. This briefing is to inform others of the UAS-NAS progress and future directions.

  2. Generic OPC UA Server Framework

    NASA Astrophysics Data System (ADS)

    Nikiel, Piotr P.; Farnham, Benjamin; Filimonov, Viatcheslav; Schlenker, Stefan

    2015-12-01

    This paper describes a new approach for generic design and efficient development of OPC UA servers. Development starts with creation of a design file, in XML format, describing an object-oriented information model of the target system or device. Using this model, the framework generates an executable OPC UA server application, which exposes the per-design OPC UA address space, without the developer writing a single line of code. Furthermore, the framework generates skeleton code into which the developer adds the necessary logic for integration to the target system or device. This approach allows both developers unfamiliar with the OPC UA standard, and advanced OPC UA developers, to create servers for the systems they are experts in while greatly reducing design and development effort as compared to developments based purely on COTS OPC UA toolkits. Higher level software may further benefit from the explicit OPC UA server model by using the XML design description as the basis for generating client connectivity configuration and server data representation. Moreover, having the XML design description at hand facilitates automatic generation of validation tools. In this contribution, the concept and implementation of this framework is detailed along with examples of actual production-level usage in the detector control system of the ATLAS experiment at CERN and beyond.

  3. Mapping with Small UAS: A Point Cloud Accuracy Assessment

    NASA Astrophysics Data System (ADS)

    Toth, Charles; Jozkow, Grzegorz; Grejner-Brzezinska, Dorota

    2015-12-01

    Interest in using inexpensive Unmanned Aerial System (UAS) technology for topographic mapping has recently significantly increased. Small UAS platforms equipped with consumer grade cameras can easily acquire high-resolution aerial imagery allowing for dense point cloud generation, followed by surface model creation and orthophoto production. In contrast to conventional airborne mapping systems, UAS has limited ground coverage due to low flying height and limited flying time, yet it offers an attractive alternative to high performance airborne systems, as the cost of the sensors and platform, and the flight logistics, is relatively low. In addition, UAS is better suited for small area data acquisitions and to acquire data in difficult to access areas, such as urban canyons or densely built-up environments. The main question with respect to the use of UAS is whether the inexpensive consumer sensors installed in UAS platforms can provide the geospatial data quality comparable to that provided by conventional systems. This study aims at the performance evaluation of the current practice of UAS-based topographic mapping by reviewing the practical aspects of sensor configuration, georeferencing and point cloud generation, including comparisons between sensor types and processing tools. The main objective is to provide accuracy characterization and practical information for selecting and using UAS solutions in general mapping applications. The analysis is based on statistical evaluation as well as visual examination of experimental data acquired by a Bergen octocopter with three different image sensor configurations, including a GoPro HERO3+ Black Edition, a Nikon D800 DSLR and a Velodyne HDL-32. In addition, georeferencing data of varying quality were acquired and evaluated. The optical imagery was processed by using three commercial point cloud generation tools. Comparing point clouds created by active and passive sensors by using different quality sensors, and finally

  4. Functionality of the GAL4/UAS system in Tribolium requires the use of endogenous core promoters

    PubMed Central

    2010-01-01

    Background The red flour beetle Tribolium castaneum has developed into an insect model system second only to Drosophila. Moreover, as a coleopteran it represents the most species-rich metazoan taxon which also includes many pest species. The genetic toolbox for Tribolium research has expanded in the past years but spatio-temporally controlled misexpression of genes has not been possible so far. Results Here we report the establishment of the GAL4/UAS binary expression system in Tribolium castaneum. Both GAL4Δ and GAL4VP16 driven by the endogenous heat shock inducible promoter of the Tribolium hsp68 gene are efficient in activating reporter gene expression under the control of the Upstream Activating Sequence (UAS). UAS driven ubiquitous tGFP fluorescence was observed in embryos within four hours after activation while in-situ hybridization against tGFP revealed expression already after two hours. The response is quick in relation to the duration of embryonic development in Tribolium - 72 hours with segmentation being completed after 24 hours - which makes the study of early embryonic processes possible using this system. By comparing the efficiency of constructs based on Tribolium, Drosophila, and artificial core promoters, respectively, we find that the use of endogenous core promoters is essential for high-level expression of transgenic constructs. Conclusions With the established GAL4/UAS binary expression system, ectopic misexpression approaches are now feasible in Tribolium. Our results support the contention that high-level transgene expression usually requires endogenous regulatory sequences, including endogenous core promoters in Tribolium and probably also other model systems. PMID:20482875

  5. NASA Dryden's UAS Service Capabilities

    NASA Technical Reports Server (NTRS)

    Bauer, Jeff

    2007-01-01

    The vision of NASA s Dryden Flight Research Center is to "fly what others only imagine." Its mission is to advance technology and science through flight. Objectives supporting the mission include performing flight research and technology integration to revolutionize aviation and pioneer aerospace technology, validating space exploration concepts, conducting airborne remote sensing and science missions, and supporting operations of the Space Shuttle and the International Space Station. A significant focus of effort in recent years has been on Unmanned Aircraft Systems (UAS), both in support of the Airborne Science Program and as research vehicles to advance the state of the art in UAS. Additionally, the Center has used its piloted aircraft in support of UAS technology development. In order to facilitate greater access to the UAS expertise that exists at the Center, that expertise has been organized around three major capabilities. The first is access to high-altitude, long-endurance UAS. The second is the establishment of a test range for small UAS. The third is safety case assessment support.

  6. NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR CODING: WEEKLY ACTIVITY FOLLOW UP (INDIVIDUAL) (UA-D-12.0)

    EPA Science Inventory

    This abstract is included for completeness of documentation. The technique described in the SOP was anticipated in study planning documents. It was subsequently not used, and the SOP was not written. This SOP was replaced by SOP UA-D-11.0.

    The purpose of this SOP is to defin...

  7. NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR CLEANING: WEEKLY ACTIVITY FOLLOW UP--INDIVIDUAL (UA-D-23.0)

    EPA Science Inventory

    This entry is included for completeness of documentation. The technique described in the SOP was anticipated in study planning documents. It was subsequently not used, and the SOP was not completed. This SOP was replaced by SOP UA-D-22.0.

    The purpose of this SOP is to define t...

  8. SUPPLEMENTARY COMPARISON: COOMET.RI(II)-S1.Rn-222 (169/UA/98): Rn-222 volume activity comparison

    NASA Astrophysics Data System (ADS)

    Skliarov, V.; Röttger, A.; Honig, A.; Korostin, S.; Kuznetsov, S.; Lapenas, A.; Milevsky, V.; Ivaniukovich, A.; Kharitonov, I.; Sepman, S.

    2009-01-01

    According to a first program, a supplementary comparison of Rn-222 volume activity was drawn up as a bilateral supplementary comparison between NSC 'Institute of Metrology', Ukraine, and VNIIFTRI, Russia. It took place in March 2005. In April 2005, at the 5th meeting of COOMET held in Braunschweig (Germany), representatives of these institutes exchanged data which showed the comparability of the national standards of Ukraine and Russia for the check points. During the discussion of the procedure some other institutes decided to join the comparison program, which was extended to BelGIM (Belarus), PTB (Germany), VNIIM (Russia) and RMTC (Latvia). The national standards of volume activity of radon-222 were thus calibrated using one standard radon radiometer as the transfer standard. Results are shown in the Final Report of the comparison. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by COOMET, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  9. Oxygen-dependent upstream activation sites of Saccharomyces cerevisiae cytochrome c genes are related forms of the same sequence

    SciTech Connect

    Cerdan, M.E.; Zitomer, R.S.

    1988-06-01

    In Sacchariomyces cerevisiae, the two genes, CYC1 and CYC7, that encode the isoforms of cytochrome c are expressed at different levels. Oxygen regulation is indicated by the expression of the CYP1 gene, and the CYP1 protein interacts with both CYC1 upstream activation sequence 1 (UAS1) and CYC7 UAS/sub 0/. In this study, the homology between the CYP1-binding sites of both genes was investigated. The most noticeable difference between the CYC1 and CYC7 UASs is the presence of GC base pairs at the same positions in a repeated sequence in CYC7 compared with CG base pairs in CYC1. Directed mutagenesis changing these GC residues to CG residues in CYC7 led to CYC1-like expression of CYC7 both in a CYP1 wild-type strain and in a strain carrying the semidominant mutation CYP1-16 which reverses the oxygen-dependent expression of the two genes. The authors' results strongly support the hypothesis that the CYP1-binding sites in CYC1 and CYC7 are related forms of the same sequence and that the CYP1-16 protein has altered specificity for the variant forms of the concensus sequences in both genes.

  10. UAS Developments Supporting Wildfire Observations

    NASA Astrophysics Data System (ADS)

    Ambrosia, V. G.; Dahlgren, R. P.; Watts, A.; Reynolds, K. W.; Ball, T.

    2014-12-01

    Wildfires are regularly occurring emergency events that threaten life, property, and natural resources in every U.S. State and many countries around the world. Despite projections that $1.8 billion will be spent by U.S. Federal agencies alone on wildfires in 2014, the decades-long trend of increasing fire size, severity, and cost is expected to continue. Furthermore, the enormous potential for UAS (and concomitant sensor systems) to serve as geospatial intelligence tools to improve the safety and effectiveness of fire management, and our ability to forecast fire and smoke movements, remains barely tapped. Although orbital sensor assets are can provide the geospatial extent of wildfires, generally those resources are limited in use due to their spatial and temporal resolution limitations. These two critical elements make orbital assets of limited utility for tactical, real-time wildfire management, or for continuous scientific analysis of the temporal dynamics related to fire energy release rates and plume concentrations that vary significantly thru a fire's progression. Large UAS platforms and sensors can and have been used to monitor wildfire events at improved temporal, spatial and radiometric scales, but more focus is being placed on the use of small UAS (sUAS) and sensors to support wildfire observation strategies. The use of sUAS is therefore more critical for TACTICAL management purposes, rather than strategic observations, where small-scale fire developments are critical to understand. This paper will highlight the historical development and use of UAS for fire observations, as well as the current shift in focus to smaller, more affordable UAS for more rapid integration into operational use on wildfire events to support tactical observation strategies, and support wildfire science measurement inprovements.

  11. The UAS(MAL) is a bidirectional promotor element required for the expression of both the MAL61 and MAL62 genes of the Saccharomyces MAL6 locus.

    PubMed

    Levine, J; Tanouye, L; Michels, C A

    1992-09-01

    Maltose fermentation in Saccharomyces yeasts requires one of five unlinked MAL loci: MAL1, 2, 3, 4, or 6. Each locus consists of three genes encoding maltose permease, maltase and the MAL activator. At MAL6 the genes are called MAL61, MAL62 and MAL63, respectively. Transcription of MAL61 and MAL62 is coordinately induced by maltose and repressed by glucose and this regulation is mediated by the MAL activator. By deletion analysis of the MAL61-MAL62 intergenic region, we show that a 68-basepair region, from base pairs -515 to -582 upstream of the MAL61 start codon, contains a sequence necessary for the maltose-induced expression of MAL61 and MAL62, the UAS(MAL). This sequence contains two copies of an 11-basepair dyad which may be the active elements of the UAS(MAL). Using heterologous gene plasmid constructs, we demonstrate that the UAS(MAL) sequence is sufficient for maltose inducibility of MAL62 and that this regulated expression requires a functional MAL activator. Our results suggest that the MAL61-MAL62 intergenic region contains additional distinct elements which function to precisely regulate MAL61 and/or MAL62 expression. Among these are repressing sequences, including a glucose-responsive element located between base pairs -583 and -638, which is partially responsible for mediating glucose-repression of MAL62 expression. PMID:1525871

  12. Identification of potential target genes for Adr1p through characterization of essential nucleotides in UAS1.

    PubMed Central

    Cheng, C; Kacherovsky, N; Dombek, K M; Camier, S; Thukral, S K; Rhim, E; Young, E T

    1994-01-01

    Adr1p is a regulatory protein in the yeast Saccharomyces cerevisiae that binds to and activates transcription from two sites in a perfect 22-bp inverted repeat, UAS1, in the ADH2 promoter. Binding requires two C2H2 zinc fingers and a region amino terminal to the fingers. The importance for DNA binding of each position within UAS1 was deduced from two types of assays. Both methods led to an identical consensus sequence containing only four essential base pairs: GG(A/G)G. The preferred sequence, TTGG(A/G)GA, is found in both halves of the inverted repeat. The region of Adr1p amino terminal to the fingers is important for phosphate contacts in the central region of UAS1. However, no base-specific contacts in this portion of UAS1 are important for DNA binding or for ADR1-dependent transcription in vivo. When the central 6 bp were deleted, only a single monomer of Adr1p was able to bind in vitro and activation in vivo was severely reduced. On the basis of these results and previous knowledge about the DNA binding site requirements, including constraints on the spacing and orientation of sites that affect activation in vivo, a consensus binding site for Adr1p was derived. By using this consensus site, potential Adr1p binding sites were located in the promoters of genes known to show ADR1-dependent expression. In addition, this consensus allowed the identification of new potential target genes for Adr1p. Images PMID:8196627

  13. The promoter of the tgt/sec operon in Escherichia coli is preceded by an upstream activation sequence that contains a high affinity FIS binding site.

    PubMed Central

    Slany, R K; Kersten, H

    1992-01-01

    The tgt/sec operon in E. coli consists of five genes: queA, tgt, ORF12, secD, and secF. QueA and Tgt participate in the biosynthesis of the hypermodified t-RNA nucleoside Queuosine, whereas SecD and SecF are involved in protein secretion. Examination of the promoter region of the operon showed structural similarity to promoter regions of the rrn-operons. An upstream activation sequence (UAS) containing a potential binding site for the factor of inversion stimulation (FIS) was found. Gel retardation assays and DNaseI footprinting indicated, that FIS binds specifically and with high affinity to a site centred at position -58. Binding of FIS caused bending of the DNA, as deduced from circular permutation analysis. Various 5' deletion mutants of the promoter region were constructed and fused to a lacZ reporter gene to determine the influence of the UAS element on the promoter strength. An approximately two-fold activation of the promoter by the UAS element was observed. Images PMID:1508713

  14. Brain activation during anticipation of sound sequences.

    PubMed

    Leaver, Amber M; Van Lare, Jennifer; Zielinski, Brandon; Halpern, Andrea R; Rauschecker, Josef P

    2009-02-25

    Music consists of sound sequences that require integration over time. As we become familiar with music, associations between notes, melodies, and entire symphonic movements become stronger and more complex. These associations can become so tight that, for example, hearing the end of one album track can elicit a robust image of the upcoming track while anticipating it in total silence. Here, we study this predictive "anticipatory imagery" at various stages throughout learning and investigate activity changes in corresponding neural structures using functional magnetic resonance imaging. Anticipatory imagery (in silence) for highly familiar naturalistic music was accompanied by pronounced activity in rostral prefrontal cortex (PFC) and premotor areas. Examining changes in the neural bases of anticipatory imagery during two stages of learning conditional associations between simple melodies, however, demonstrates the importance of fronto-striatal connections, consistent with a role of the basal ganglia in "training" frontal cortex (Pasupathy and Miller, 2005). Another striking change in neural resources during learning was a shift between caudal PFC earlier to rostral PFC later in learning. Our findings regarding musical anticipation and sound sequence learning are highly compatible with studies of motor sequence learning, suggesting common predictive mechanisms in both domains. PMID:19244522

  15. Targeted expression in zebrafish primordial germ cells by Cre/loxP and Gal4/UAS systems.

    PubMed

    Xiong, Feng; Wei, Zhi-Qiang; Zhu, Zuo-Yan; Sun, Yong-Hua

    2013-10-01

    In zebrafish and other vertebrates, primordial germ cells (PGCs) are a population of embryonic cells that give rise to sperm and eggs in adults. Any type of genetically manipulated lines have to be originated from the germ cells of the manipulated founders, thus it is of great importance to establish an effective technology for highly specific PGC-targeted gene manipulation in vertebrates. In the present study, we used the Cre/loxP recombinase system and Gal4/UAS transcription system for induction and regulation of mRFP (monomer red fluorescent protein) gene expression to achieve highly efficient PGC-targeted gene expression in zebrafish. First, we established two transgenic activator lines, Tg(kop:cre) and Tg(kop:KalTA4), to express the Cre recombinases and the Gal4 activator proteins in PGCs. Second, we generated two transgenic effector lines, Tg(kop:loxP-SV40-loxP-mRFP) and Tg(UAS:mRFP), which intrinsically showed transcriptional silence of mRFP. When Tg(kop:cre) females were crossed with Tg(kop:loxP-SV40-loxP-mRFP) males, the loxP flanked SV40 transcriptional stop sequence was 100 % removed from the germ cells of the transgenic hybrids. This led to massive production of PGC-specific mRFP transgenic line, Tg(kop:loxP-mRFP), from an mRFP silent transgenic line, Tg(kop:loxP-SV40-loxP-mRFP). When Tg(kop:KalTA4) females were crossed with Tg(UAS:mRFP) males, the hybrid embryos showed PGC specifically expressed mRFP from shield stage till 25 days post-fertilization (pf), indicating the high sensitivity, high efficiency, and long-lasting effect of the Gal4/UAS system. Real-time PCR analysis showed that the transcriptional amplification efficiency of the Gal4/UAS system in PGCs can be about 300 times higher than in 1-day-pf embryos. More importantly, when the UAS:mRFP-nos1 construct was directly injected into the Tg(kop:KalTA4) embryos, it was possible to specifically label the PGCs with high sensitivity, efficiency, and persistence. Therefore, we have established two

  16. Delivery of ursolic acid (UA) in polymeric nanoparticles effectively promotes the apoptosis of gastric cancer cells through enhanced inhibition of cyclooxygenase 2 (COX-2).

    PubMed

    Zhang, Hao; Li, Xiaolin; Ding, Jing; Xu, Huae; Dai, Xinzheng; Hou, Zhibo; Zhang, Kai; Sun, Kun; Sun, Weihao

    2013-01-30

    It has been demonstrated that ursolic acid (UA) could effectively induces apoptosis of cancer cells by inhibiting the expression of cyclooxygenase 2 (COX-2), which constitutively expresses in gastric cancer. However, the hydrophobicity of UA increases the difficulty in its potential clinical application, which raises the possibility for its application as a novel model drug in nanoparticle-based delivery system. UA-loaded nanoparticles (UA-NPs) were prepared by a nano-precipitation method using amphilic methoxy poly(ethylene glycol)-polycaprolactone (mPEG-PCL) block copolymers as drug carriers. UA was effectively transported into SGC7901 cells by nanoparticles and localized around the nuclei in the cytoplasms. The in vitro cytotoxicity and apoptosis test indicated that UA-NPs significantly elicited more cell death at almost equivalent dose and corresponding incubation time. Moreover, UA-NPs led to more cell apoptosis through stronger inhibition of COX-2 and activation of caspase 3. The most powerful evidence from this report is that the significant differences between the cytotoxicity of free UA and UA-NPs are closely related to the expression levels of COX-2 and caspase-3, which demonstrates the superiority of UA-NPs over free UA through penetrating cell membrane. Therefore, the study offer an effective way to improve the anticancer efficiency of UA through nano-drug delivery system. PMID:23194884

  17. UAS remote sensing missions for rangeland applications

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Rangelands cover about 50% of the earth’s land surface, are in remote areas and have low population densities, all of which provide an ideal opportunity for remote sensing applications from unmanned aircraft systems (UAS). In this paper, we describe a proven workflow for UAS-based remote sensing, an...

  18. Unmanned Aerial Systems (UAS): Evolving Trends

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal

    2015-01-01

    Near-term Goal: Enable initial low-altitude airspace and UAS operations with demonstrated safety as early as possible, within 5 years; Long-term Goal: Accommodate increased UAS operations with highest safety, efficiency, and capacity as much autonomously as possible (10-15 years).

  19. MIZOPEX - A UAS Arctic Campaign During Summer 2013

    NASA Astrophysics Data System (ADS)

    Tschudi, M. A.; Maslanik, J. A.; Emery, W. J.; Palo, S. E.; Bradley, A. C.; Weibel, D.; Zappa, C. J.; Brown, S.; Lawrence, D.; Fladeland, M. M.; Ligon, L.; Elstner, P.; Berthold, R.; Adler, J.

    2014-12-01

    Despite the significance of the marginal ice zones of the Arctic Ocean, basic parameters such as sea surface temperature (SST) and a range of sea ice characteristics are still insufficiently understood in these areas, and especially so during the summer melt period. The Marginal Ice Zone Ocean and Ice Observations and Processes Experiment (MIZOPEX) was conceived to address directly these information gaps through a targeted, intensive observing campaign that would take advantage of the capabilities of multiple classes of UAS combined with in-situ sensing and satellite observations. The MIZOPEX campaign took place during July-August 2013. A total of 24 UAS flights were performed prior to the last field day on 9 August; 2 NASA SIERRA flights, 16 University of Alaska-Fairbanks ScanEagle flights, and 4 CU-Boulder DataHawk flights, for a total of 54 flight hours. Flight operations for all three UAS were based from the active USAF DEW Line station and runway at Oliktok Point, AK. As the ice cover evolved over the July-August period, two separate regions of focus were identified for the UAS flights - a southern region that was within the flying range of the non-Iridium-equipped ScanEagles, and a more northern area where ice concentration was greater. Mapping-type missions were carried out over these locations on multiple days, along with Air-Deployed Micro-Buoy (ADMB) deployment and data uploading.

  20. Safety and Certification Considerations for Expanding the Use of UAS in Precision Agriculture

    NASA Technical Reports Server (NTRS)

    Hayhurst, Kelly J.; Maddalon, Jeffrey M.; Neogi, Natasha A.; Vertstynen, Harry A.

    2016-01-01

    The agricultural community is actively engaged in adopting new technologies such as unmanned aircraft systems (UAS) to help assess the condition of crops and develop appropriate treatment plans. In the United States, agricultural use of UAS has largely been limited to small UAS, generally weighing less than 55 lb and operating within the line of sight of a remote pilot. A variety of small UAS are being used to monitor and map crops, while only a few are being used to apply agricultural inputs based on the results of remote sensing. Larger UAS with substantial payload capacity could provide an option for site-specific application of agricultural inputs in a timely fashion, without substantive damage to the crops or soil. A recent study by the National Aeronautics and Space Administration (NASA) investigated certification requirements needed to enable the use of larger UAS to support the precision agriculture industry. This paper provides a brief introduction to aircraft certification relevant to agricultural UAS, an overview of and results from the NASA study, and a discussion of how those results might affect the precision agriculture community. Specific topics of interest include business model considerations for unmanned aerial applicators and a comparison with current means of variable rate application. The intent of the paper is to inform the precision agriculture community of evolving technologies that will enable broader use of unmanned vehicles to reduce costs, reduce environmental impacts, and enhance yield, especially for specialty crops that are grown on small to medium size farms.

  1. Initial Experimental Airworthiness Certification Guidance for UAS. UAS Experimental Certification Process and Guidance

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This paper addresses the regulatory processes and requirements already in place by which an applicant might obtain experimental airworthiness certification for a civil Unmanned Aircraft System (UAS). It is more extensive and subsequent to an earlier, similar deliverable, PD007, which was an interim study of the same topic. Since few regulatory airworthiness and operating standards exist for UAS like those for traditional manned aircraft and since most UAS have historically been developed and operated under military auspices, civil use of UAS in the NAS is a new and unfamiliar challenge requiring specific and unique considerations. Experimental certification is the most basic level of FAA approval toward routine UAS operation in the NAS. The paper reviews and explains existing FAA requirements for an applicant seeking experimental airworthiness approval and details the process for submission of necessary information. It summarizes the limited purposes for which experimental aircraft may be used and addresses pertinent aspects of UAS design, construction and operation in the NAS in harmony with traditional manned aircraft. Policy IPT position is that UAS, while different from manned aircraft, can use the same initial processes to gain civil operating experience under the experimental approval. Particular note is taken of those UAS-unique characteristics which require extra attention to assure equivalent safety of operation, such as the UAS control station and sense-and-avoid. The paper also provides "best practices" guidance for UAS manufacturers and FAA personnel in two appendices. The material in Appendix A is intended to provide guidance on assuring UAS safety to FAA, and provides FAA personnel with a suggested list of items to review, with a focus on UAS unique factors, prior to issuance of an experimental airworthiness certificate. Appendix B provides an outline for a program letter which a manufacturer could use in preparing the application for an UAS

  2. Unmanned Aerial System (UAS) Traffic Management (UTM): Enabling Low-Altitude Airspace and UAS Operations

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal H.

    2014-01-01

    Many civilian applications of Unmanned Aerial Systems (UAS) have been imagined ranging from remote to congested urban areas, including goods delivery, infrastructure surveillance, agricultural support, and medical services delivery. Further, these UAS will have different equipage and capabilities based on considerations such as affordability, and mission needs applications. Such heterogeneous UAS mix, along with operations such as general aviation, helicopters, gliders must be safely accommodated at lower altitudes. However, key infrastructure to enable and safely manage widespread use of low-altitude airspace and UAS operations therein does not exist. Therefore, NASA is exploring functional design, concept and technology development, and a prototype UAS Traffic Management (UTM) system. UTM will support safe and efficient UAS operations for the delivery of goods and services

  3. Using shotgun sequence data to find active restriction enzyme genes.

    PubMed

    Zheng, Yu; Posfai, Janos; Morgan, Richard D; Vincze, Tamas; Roberts, Richard J

    2009-01-01

    Whole genome shotgun sequence analysis has become the standard method for beginning to determine a genome sequence. The preparation of the shotgun sequence clones is, in fact, a biological experiment. It determines which segments of the genome can be cloned into Escherichia coli and which cannot. By analyzing the complete set of sequences from such an experiment, it is possible to identify genes lethal to E. coli. Among this set are genes encoding restriction enzymes which, when active in E. coli, lead to cell death by cleaving the E. coli genome at the restriction enzyme recognition sites. By analyzing shotgun sequence data sets we show that this is a reliable method to detect active restriction enzyme genes in newly sequenced genomes, thereby facilitating functional annotation. Active restriction enzyme genes have been identified, and their activity demonstrated biochemically, in the sequenced genomes of Methanocaldococcus jannaschii, Bacillus cereus ATCC 10987 and Methylococcus capsulatus. PMID:18988632

  4. UAS in the NAS: Survey Responses by ATC, Manned Aircraft Pilots, and UAS Pilots

    NASA Technical Reports Server (NTRS)

    Comstock, James R., Jr.; McAdaragh, Raymon; Ghatas, Rania W.; Burdette, Daniel W.; Trujillo, Anna C.

    2014-01-01

    NASA currently is working with industry and the Federal Aviation Administration (FAA) to establish future requirements for Unmanned Aircraft Systems (UAS) flying in the National Airspace System (NAS). To work these issues NASA has established a multi-center "UAS Integration in the NAS" project. In order to establish Ground Control Station requirements for UAS, the perspective of each of the major players in NAS operations was desired. Three on-line surveys were administered that focused on Air Traffic Controllers (ATC), pilots of manned aircraft, and pilots of UAS. Follow-up telephone interviews were conducted with some survey respondents. The survey questions addressed UAS control, navigation, and communications from the perspective of small and large unmanned aircraft. Questions also addressed issues of UAS equipage, especially with regard to sense and avoid capabilities. From the civilian ATC and military ATC perspectives, of particular interest are how mixed operations (manned / UAS) have worked in the past and the role of aircraft equipage. Knowledge gained from this information is expected to assist the NASA UAS Integration in the NAS project in directing research foci thus assisting the FAA in the development of rules, regulations, and policies related to UAS in the NAS.

  5. UAS in the NAS: Survey Responses by ATC, Manned Aircraft Pilots, and UAS Pilots

    NASA Technical Reports Server (NTRS)

    Comstock, James R., Jr.; McAdaragh, Raymon; Ghatas, Rania W.; Burdette, Daniel W.; Trujillo, Anna C.

    2013-01-01

    NASA currently is working with industry and the Federal Aviation Administration (FAA) to establish future requirements for Unmanned Aircraft Systems (UAS) flying in the National Airspace System (NAS). To work these issues NASA has established a multi-center UAS Integration in the NAS project. In order to establish Ground Control Station requirements for UAS, the perspective of each of the major players in NAS operations was desired. Three on-line surveys were administered that focused on Air Traffic Controllers (ATC), pilots of manned aircraft, and pilots of UAS. Follow-up telephone interviews were conducted with some survey respondents. The survey questions addressed UAS control, navigation, and communications from the perspective of small and large unmanned aircraft. Questions also addressed issues of UAS equipage, especially with regard to sense and avoid capabilities. From the ATC and military ATC perspective, of particular interest is how mixed-operations (manned/UAS) have worked in the past and the role of aircraft equipage. Knowledge gained from this information is expected to assist the NASA UAS in the NAS project in directing research foci thus assisting the FAA in the development of rules, regulations, and policies related to UAS in the NAS.

  6. NASA Experience with UAS Science Applications

    NASA Technical Reports Server (NTRS)

    Curry, Robert E.; Jennison, Chris

    2007-01-01

    Viewgraphs of NASA's Unmanned Aerial Systems (UAS) as it applies to Earth science missions is presented. The topics include: 1) Agenda; 2) Background; 3) NASA Science Aircraft Endurance; 4) Science UAS Development Challenges; 5) USCG Alaskan Maritime Surveillance; 6) NOAA/NASA UAV Demonstration Project; 7) Western States Fire Mission; 8) Esperanza Fire Emergency Response; 9) Ikhana (Predator B); 10) UAV Synthetic Aperture Radar (UAVSAR); 11) Global Hawk; and 12) Related Technologies

  7. UAS NAS IHITL Test Readiness Review (TRR)

    NASA Technical Reports Server (NTRS)

    Murphy, Jim; Brignola, Michael P.; Rorie, Conrad; Santiago, Confesor; Guminsky, Mike; Cross, Ken

    2014-01-01

    Requesting release of IHITL test readiness review (TRR) charts to ensure UAS-NAS project primary stakeholders, the Federal Aviation Administration through the RTCA special committee -228 and the Office of the Secretary of Defense Sense and Avoid Science and Research Panel, are well informed on the IHITL test plan and expected outcomes as they relate to their needs to safely fly UAS in the NAS.

  8. Mesoscopic Patterns of Neural Activity Support Songbird Cortical Sequences

    PubMed Central

    Guitchounts, Grigori; Velho, Tarciso; Lois, Carlos; Gardner, Timothy J.

    2015-01-01

    Time-locked sequences of neural activity can be found throughout the vertebrate forebrain in various species and behavioral contexts. From “time cells” in the hippocampus of rodents to cortical activity controlling movement, temporal sequence generation is integral to many forms of learned behavior. However, the mechanisms underlying sequence generation are not well known. Here, we describe a spatial and temporal organization of the songbird premotor cortical microcircuit that supports sparse sequences of neural activity. Multi-channel electrophysiology and calcium imaging reveal that neural activity in premotor cortex is correlated with a length scale of 100 µm. Within this length scale, basal-ganglia–projecting excitatory neurons, on average, fire at a specific phase of a local 30 Hz network rhythm. These results show that premotor cortical activity is inhomogeneous in time and space, and that a mesoscopic dynamical pattern underlies the generation of the neural sequences controlling song. PMID:26039895

  9. Mesoscopic patterns of neural activity support songbird cortical sequences.

    PubMed

    Markowitz, Jeffrey E; Liberti, William A; Guitchounts, Grigori; Velho, Tarciso; Lois, Carlos; Gardner, Timothy J

    2015-06-01

    Time-locked sequences of neural activity can be found throughout the vertebrate forebrain in various species and behavioral contexts. From "time cells" in the hippocampus of rodents to cortical activity controlling movement, temporal sequence generation is integral to many forms of learned behavior. However, the mechanisms underlying sequence generation are not well known. Here, we describe a spatial and temporal organization of the songbird premotor cortical microcircuit that supports sparse sequences of neural activity. Multi-channel electrophysiology and calcium imaging reveal that neural activity in premotor cortex is correlated with a length scale of 100 µm. Within this length scale, basal-ganglia-projecting excitatory neurons, on average, fire at a specific phase of a local 30 Hz network rhythm. These results show that premotor cortical activity is inhomogeneous in time and space, and that a mesoscopic dynamical pattern underlies the generation of the neural sequences controlling song. PMID:26039895

  10. Possibilities of Uas for Maritime Monitoring

    NASA Astrophysics Data System (ADS)

    Klimkowska, A.; Lee, I.; Choi, K.

    2016-06-01

    In the last few years, Unmanned Aircraft Systems (UAS) have become more important and its use for different application is appreciated. At the beginning UAS were used for military purposes. These successful applications initiated interest among researchers to find uses of UAS for civilian purposes, as they are alternative to both manned and satellite systems in acquiring high-resolution remote sensing data at lower cost while long flight duration. As UAS are built from many components such as unmanned aerial vehicle (UAV), sensing payloads, communication systems, ground control stations, recovery and launch equipment, and supporting equipment, knowledge about its functionality and characteristics is crucial for missions. Therefore, finding appropriate configuration of all elements to fulfill requirements of the mission is a very difficult, yet important task. UAS may be used in various maritime applications such as ship detection, red tide detection and monitoring, border patrol, tracking of pollution at sea and hurricane monitoring just to mention few. One of the greatest advantages of UAV is their ability to fly over dangerous and hazardous areas, where sending manned aircraft could be risky for a crew. In this article brief description of aerial unmanned system components is introduced. Firstly characteristics of unmanned aerial vehicles are presented, it continues with introducing inertial navigation system, communication systems, sensing payloads, ground control stations, and ground and recovery equipment. Next part introduces some examples of UAS for maritime applications. This is followed by suggestions of key indicators which should be taken into consideration while choosing UAS. Last part talks about configuration schemes of UAVs and sensor payloads suggested for some maritime applications.

  11. Ergonomics and workplace design: application of Ergo-UAS System in Fiat Group Automobiles.

    PubMed

    Vitello, M; Galante, L G; Capoccia, M; Caragnano, G

    2012-01-01

    Since 2008 Fiat Group Automobiles has introduced Ergo-UAS system for the balancing of production lines and to detect ergonomic issues. Ergo-UAS system integrates 2 specific methods: MTM-UAS for time measurement and EAWS as ergonomic method to evaluate biomechanical effort for each workstation. Fiat is using a software system to manage time evaluation and ergo characterization of production cycle (UAS) to perform line balancing and obtain allowance factor in all Italian car manufacturing plant. For new car models, starting from New Panda, FGA is applying Ergo-UAS for workplace design since the earliest phase of product development. This means that workplace design is based on information about new product, new layout, new work organization and is performed by a multidisciplinary team (Work Place Integration Team), focusing on several aspects of product and process: safety, quality and productivity. This allows to find and solve ergonomic threats before the start of production, by means of a strict cooperation between product development, engineering and design, manufacturing. Three examples of workstation design are presented in which application of Ergo-UAS was determinant to find out initial excessive levels of biomechanical load and helped the process designer to improve the workstations and define limits of acceptability. Technical activities (on product or on process), or organizational changes, that have been implemented in order to solve the problems are presented. A comparison between "before" and "new" ergonomic scores necessary to bring workstations in acceptable conditions were made. PMID:22317404

  12. A Beginner's Sequence of Programming Activities.

    ERIC Educational Resources Information Center

    Slesnick, Twila

    1984-01-01

    Presents various programing activities using the BASIC and LOGO programing languages. Activities are included in separate sections with a title indicating the nature of the activities and the "tools" (commands) needed. For example, "Old-fashioned drawing" requires several tools (PRINT, LIST, RUN, GOTO) to make drawings using BASIC. (JN)

  13. U.S.-MEXICO BORDER PROGRAM ARIZONA BORDER STUDY--STANDARD OPERATING PROCEDURE FOR CLEANING: TIME DIARY AND ACTIVITY QUESTIONNAIRE (UA-D-20.0)

    EPA Science Inventory

    The purpose of this SOP is to define the steps involved in cleaning the electronic data generated from data entry of the Time Diary and Activity Questionnaire. It applies to electronic data corresponding to the Time Diary and Activity Questionnaire that was scanned and verified ...

  14. NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR CLEANING: TIME DIARY AND ACTIVITY QUESTIONNAIRE (UA-D-20.0)

    EPA Science Inventory

    The purpose of this SOP is to define the steps involved in cleaning the electronic data generated from data entry of the Time Diary and Activity Questionnaire. It applies to electronic data corresponding to the Time Diary and Activity Questionnaire that was scanned and verified ...

  15. UAS Integration in the NAS Project: Integrated Test and Evaluation (IT&E) Flight Test 3. Revision E

    NASA Technical Reports Server (NTRS)

    Marston, Michael

    2015-01-01

    The desire and ability to fly Unmanned Aircraft Systems (UAS) in the National Airspace System (NAS) is of increasing urgency. The application of unmanned aircraft to perform national security, defense, scientific, and emergency management are driving the critical need for less restrictive access by UAS to the NAS. UAS represent a new capability that will provide a variety of services in the government (public) and commercial (civil) aviation sectors. The growth of this potential industry has not yet been realized due to the lack of a common understanding of what is required to safely operate UAS in the NAS. NASA's UAS Integration into the NAS Project is conducting research in the areas of Separation Assurance/Sense and Avoid Interoperability, Human Systems Integration (HSI), and Communication to support reducing the barriers of UAS access to the NAS. This research is broken into two research themes namely, UAS Integration and Test Infrastructure. UAS Integration focuses on airspace integration procedures and performance standards to enable UAS integration in the air transportation system, covering Sense and Avoid (SAA) performance standards, command and control performance standards, and human systems integration. The focus of Test Infrastructure is to enable development and validation of airspace integration procedures and performance standards, including the integrated test and evaluation. In support of the integrated test and evaluation efforts, the Project will develop an adaptable, scalable, and schedulable relevant test environment capable of evaluating concepts and technologies for unmanned aircraft systems to safely operate in the NAS. To accomplish this task, the Project will conduct a series of Human-in-the-Loop and Flight Test activities that integrate key concepts, technologies and/or procedures in a relevant air traffic environment. Each of the integrated events will build on the technical achievements, fidelity and complexity of the previous tests and

  16. The role of FIS in trans activation of stable RNA operons of E. coli.

    PubMed

    Nilsson, L; Vanet, A; Vijgenboom, E; Bosch, L

    1990-03-01

    The thrU(tufB) operon of Escherichia coli is endowed with a cis-acting region upstream of the promoter, designated UAS for Upstream Activator Sequence. A protein fraction has been isolated that binds specifically to DNA fragments of the UAS, thus forming three protein-DNA complexes corresponding to three binding sites on the UAS. It stimulates in vitro transcription of the operon by facilitating the binding of the RNA polymerase to the promoter. All three protein-DNA complexes contain one and the same protein. Dissociation constants for the three complexes have been determined, the lowest being in the sub-nanomolar range. The protein also binds to the UAS of the tyrT operon and to the UAS upstream of the P1 promoter of the rrnB operon, suggesting that transcription of the three operons, if not of more stable RNA operons, is activated by a common trans activator. We demonstrate that the E.coli protein FIS (Factor for Inversion Stimulation) also binds to the UAS of the thrU(tufB) operon forming three protein-DNA complexes. A burst of UAS- and FIS-dependent promoter activity is observed after reinitiation of growth of stationary cultures in fresh medium. PMID:1690124

  17. Crop height determination with UAS point clouds

    NASA Astrophysics Data System (ADS)

    Grenzdörffer, G. J.

    2014-11-01

    The accurate determination of the height of agricultural crops helps to predict yield, biomass etc. These relationships are of great importance not only for crop production but also in grassland management, because the available biomass and food quality are valuable information. However there is no cost efficient and automatic system for the determination of the crop height available. 3D-point clouds generated from high resolution UAS imagery offer a new alternative. Two different approaches for crop height determination are presented. The "difference method" were the canopy height is determined by taking the difference between a current UAS-surface model and an existing digital terrain model (DTM) is the most suited and most accurate method. In situ measurements, vegetation indices and yield observations correlate well with the determined UAS crop heights.

  18. Registration and Marking Requirements for UAS. Unmanned Aircraft System (UAS) Registration

    NASA Technical Reports Server (NTRS)

    2005-01-01

    The registration of an aircraft is a prerequisite for issuance of a U.S. certificate of airworthiness by the FAA. The procedures and requirements for aircraft registration, and the subsequent issuance of registration numbers, are contained in FAR Part 47. However, the process/method(s) for applying the requirements of Parts 45 & 47 to Unmanned Aircraft Systems (UAS) has not been defined. This task resolved the application of 14 CFR Parts 45 and 47 to UAS. Key Findings: UAS are aircraft systems and as such the recommended approach to registration is to follow the same process for registration as manned aircraft. This will require manufacturers to comply with the requirements for 14 CFR 47, Aircraft Registration and 14 CFR 45, Identification and Registration Marking. In addition, only the UA should be identified with the N number registration markings. There should also be a documentation link showing the applicability of the control station and communication link to the UA. The documentation link can be in the form of a Type Certificate Data Sheet (TCDS) entry or a UAS logbook entry. The recommended process for the registration of UAS is similar to the manned aircraft process and is outlined in a 6-step process in the paper.

  19. UAS imaging for archaeological survey and documentation

    NASA Astrophysics Data System (ADS)

    Esposito, S.; Fallavollita, P.; Melis, M. G.; Balsi, M.; Jankowski, S.

    2013-10-01

    Unmanned Aerial Systems (UAS) are extensively used in diverse fields, wherever inexpensive and easy-to-deploy platforms are required for close-range remote sensing. Applications proposed in archaeology to date include ortho-photography and 3-D modeling. On the other hand, use of image processing and feature detection methods, well developed in other fields is hardly used. After reviewing technologies and methods for UAS-based surveying and surface modeling, we propose feature detection methods (e.g. line detection, texture segmentation) dedicated to extraction of structures in the images that are significant for archaeological survey, planning, and documentation and show results on selected case studies.

  20. Inference of Splicing Regulatory Activities by Sequence Neighborhood Analysis

    PubMed Central

    Stadler, Michael B; Shomron, Noam; Yeo, Gene W; Schneider, Aniket; Xiao, Xinshu; Burge, Christopher B

    2006-01-01

    Sequence-specific recognition of nucleic-acid motifs is critical to many cellular processes. We have developed a new and general method called Neighborhood Inference (NI) that predicts sequences with activity in regulating a biochemical process based on the local density of known sites in sequence space. Applied to the problem of RNA splicing regulation, NI was used to predict hundreds of new exonic splicing enhancer (ESE) and silencer (ESS) hexanucleotides from known human ESEs and ESSs. These predictions were supported by cross-validation analysis, by analysis of published splicing regulatory activity data, by sequence-conservation analysis, and by measurement of the splicing regulatory activity of 24 novel predicted ESEs, ESSs, and neutral sequences using an in vivo splicing reporter assay. These results demonstrate the ability of NI to accurately predict splicing regulatory activity and show that the scope of exonic splicing regulatory elements is substantially larger than previously anticipated. Analysis of orthologous exons in four mammals showed that the NI score of ESEs, a measure of function, is much more highly conserved above background than ESE primary sequence. This observation indicates a high degree of selection for ESE activity in mammalian exons, with surprisingly frequent interchangeability between ESE sequences. PMID:17121466

  1. UAS Integration in the NAS Project - Project Overview

    NASA Technical Reports Server (NTRS)

    Johnson, Chuck

    2011-01-01

    The goal of the UAS integration in the NAS Project is to contribute capabili1es that reduce technical barriers related to the safety and opera1onal challenges associated with enabling routine UAS access to the NAS.

  2. UAS Integration in the NAS Project and Future Autonomy Research

    NASA Technical Reports Server (NTRS)

    Johnson, Charles W.

    2014-01-01

    This presentation highlights NASA use of unmanned aircraft systems (UAS) and related technologies for civil purposes. This briefing will give more insight into the UAS projects progress and future goals.

  3. Influence of UAS Pilot Communication and Execution Delay on Controller's Acceptability Ratings of UAS-ATC Interactions

    NASA Technical Reports Server (NTRS)

    Vu, Kim-Phuong L.; Morales, Gregory; Chiappe, Dan; Strybel, Thomas Z.; Battiste, Vernol; Shively, Jay; Buker, Timothy J

    2013-01-01

    Successful integration of UAS in the NAS will require that UAS interactions with the air traffic management system be similar to interactions between manned aircraft and air traffic management. For example, UAS response times to air traffic controller (ATCo) clearances should be equivalent to those that are currently found to be acceptable with manned aircraft. Prior studies have examined communication delays with manned aircraft. Unfortunately, there is no analogous body of research for UAS. The goal of the present study was to determine how UAS pilot communication and execution delays affect ATCos' acceptability ratings of UAS pilot responses when the UAS is operating in the NAS. Eight radar-certified controllers managed traffic in a modified ZLA sector with one UAS flying in it. In separate scenarios, the UAS pilot verbal communication and execution delays were either short (1.5 s) or long (5 s) and either constant or variable. The ATCo acceptability of UAS pilot communication and execution delays were measured subjectively via post trial ratings. UAS verbal pilot communication delay, were rated as acceptable 92% of the time when the delay was short. This acceptability level decreased to 64% when the delay was long. UAS pilot execution delay had less of an influence on ATCo acceptability ratings in the present stimulation. Implications of these findings for UAS in the NAS integration are discussed.

  4. Activation of the Ustilagic Acid Biosynthesis Gene Cluster in Ustilago maydis by the C2H2 Zinc Finger Transcription Factor Rua1▿

    PubMed Central

    Teichmann, Beate; Liu, Lidan; Schink, Kay Oliver; Bölker, Michael

    2010-01-01

    The phytopathogenic basidiomycetous fungus Ustilago maydis secretes, under conditions of nitrogen starvation, large amounts of the biosurfactant ustilagic acid (UA). This secreted cellobiose glycolipid is toxic for many microorganisms and confers biocontrol activity to U. maydis. Recently, a large gene cluster that is responsible for UA biosynthesis was identified. Here, we show that expression of all cluster genes depends on Rua1, a nuclear protein of the C2H2 zinc finger family, whose gene is located within the gene cluster. While deletion of rua1 results in complete loss of UA production, overexpression of rua1 promotes increased UA synthesis even in the presence of a good nitrogen source. Bioinformatic analysis allowed us to identify a conserved sequence element that is present in the promoters of all structural genes involved in UA biosynthesis. Deletion analysis of several promoters within the cluster revealed that this DNA element serves as an upstream activating sequence (UAS) and mediates Rua1-dependent expression. We used the yeast one-hybrid system to demonstrate specific recognition of this DNA element by Rua1. Introduction of nucleotide exchanges into the consensus sequence interfered with Rua1-dependent activation, suggesting that this sequence element acts as a direct binding site for Rua1. PMID:20173069

  5. Activation of the ustilagic acid biosynthesis gene cluster in Ustilago maydis by the C2H2 zinc finger transcription factor Rua1.

    PubMed

    Teichmann, Beate; Liu, Lidan; Schink, Kay Oliver; Bölker, Michael

    2010-04-01

    The phytopathogenic basidiomycetous fungus Ustilago maydis secretes, under conditions of nitrogen starvation, large amounts of the biosurfactant ustilagic acid (UA). This secreted cellobiose glycolipid is toxic for many microorganisms and confers biocontrol activity to U. maydis. Recently, a large gene cluster that is responsible for UA biosynthesis was identified. Here, we show that expression of all cluster genes depends on Rua1, a nuclear protein of the C(2)H(2) zinc finger family, whose gene is located within the gene cluster. While deletion of rua1 results in complete loss of UA production, overexpression of rua1 promotes increased UA synthesis even in the presence of a good nitrogen source. Bioinformatic analysis allowed us to identify a conserved sequence element that is present in the promoters of all structural genes involved in UA biosynthesis. Deletion analysis of several promoters within the cluster revealed that this DNA element serves as an upstream activating sequence (UAS) and mediates Rua1-dependent expression. We used the yeast one-hybrid system to demonstrate specific recognition of this DNA element by Rua1. Introduction of nucleotide exchanges into the consensus sequence interfered with Rua1-dependent activation, suggesting that this sequence element acts as a direct binding site for Rua1. PMID:20173069

  6. UAS Integration into the NAS Project

    NASA Technical Reports Server (NTRS)

    Bauer, Jeff

    2010-01-01

    The goal of the UAS Integration in the NAS Project is to contribute capabilities that reduce technical barriers related to the safety and operational challenges associated with enabling routine UAS access to the NAS This goal will be accomplished through a two-phased approach of system-level integration of key concepts, technologies and/or procedures, and demonstrations of integrated capabilities in an operationally relevant environment. Technical objectives include: PHASE 1: a) Validating the key technical areas identified by this project. System-level analyses, a State of the Art Analysis (SOAA), and a ConOps will identify the challenges and barriers preventing routine UAS access to the NAS. b) Developing a national roadmap and gap analysis identifying specific deliverables in the area of operations, procedures, and technologies that will impact future policy decisions. PHASE 2: a) Provide regulators with a methodology for developing airworthiness requirements for UAS and data to support development of certifications standards and regulatory guidance. b) Provide systems-level integrated testing of concepts and/or capabilities that address barriers to routine access to the NAS. Through simulation and flight testing, address issues including separation assurance, communications requirements, and Pilot Aircraft Interfaces (PAIs) in operationally relevant environments

  7. Volcano Gas Measurements from UAS - Customization of Sensors and Platforms

    NASA Astrophysics Data System (ADS)

    Werner, C. A.; Dahlgren, R. P.; Kern, C.; Kelly, P. J.; Fladeland, M. M.; Norton, K.; Johnson, M. S.; Sutton, A. J.; Elias, T.

    2015-12-01

    Volcanic eruptions threaten not only the lives and property of local populations, but also aviation worldwide. Volcanic gas release is a key driving force in eruptive activity, and monitoring gas emissions is critical to assessing volcanic hazards, yet most volcanoes are not monitored for volcanic gas emission. Measuring volcanic gas emissions with manned aircraft has been standard practice for many years during eruptive crises, but such measurements are quite costly. As a result, measurements are typically only made every week or two at most during periods of unrest or eruption, whereas eruption dynamics change much more rapidly. Furthermore, very few measurements are made between eruptions to establish baseline emissions. Unmanned aerial system (UAS) measurements of volcanic plumes hold great promise for both improving temporal resolution of measurements during volcanic unrest, and for reducing the exposure of personnel to potentially hazardous conditions. Here we present the results of a new collaborative effort between the US Geological Survey and NASA Ames Research Center to develop a UAS specific for volcano gas monitoring using miniaturized gas sensing systems and a custom airframe. Two miniaturized sensing systems are being built and tested: a microDOAS system to quantify SO2 emission rates, and a miniature MultiGAS system for measuring in-situ concentrations of CO2, SO2, and H2S. The instruments are being built into pods that will be flown on a custom airframe built from surplus Raven RQ-11. The Raven is one of the smallest UAS (a SUAS), and has the potential to support global rapid response when eruptions occur because they require less crew for operations. A test mission is planned for fall 2015 or spring 2016 at the Crows Landing Airfield in central California. Future measurement locations might include Kilauea Volcano in Hawaii, or Pagan Volcano in the Marianas.

  8. The Impact of Suggestive Maneuver Guidance on UAS Pilots Performing the Detect and Avoid Function

    NASA Technical Reports Server (NTRS)

    Rorie, Conrad; Fern, Lisa; Shively, Jay

    2016-01-01

    This presentation discusses the results of a recent UAS Integration into the NAS human-in-the-loop simulation. In the study, 16 active UAS pilots flew a UAS through civil airspace and were tasked with maintaining well clear from other aircraft in the area. Pilots performed the task with four different detect and avoid (DAA) traffic displays, each of which varied in the form of guidance it provided to pilots The present findings focus on how the different displays impacted pilots' measured response to scripted conflicts with their aircraft. Measured response is made up of several components, each of which help inform our understanding of the pilots' role in the overall detect and avoid task.

  9. Cooperative Uas Localization Using Lowcost Sensors

    NASA Astrophysics Data System (ADS)

    Goel, Salil; Kealy, Allison; Lohani, Bharat

    2016-06-01

    Networks of small, low cost Unmanned Aerial Systems (UASs) have the potential to improve responsiveness and situational awareness across an increasing number of applications including defense, surveillance, mapping, search and rescue, disaster management, mineral exploration, assisted guidance and navigation etc. These ad hoc UAS networks typically have the capability to communicate with each other and can share data between the individual UAS nodes. Thus these networks can operate as robust and efficient information acquisition platforms. For any of the applications involving UASs, a primary requirement is the localization i.e. determining the position and orientation of the UAS. The performance requirements of localization can vary with individual applications, for example: mapping applications need much higher localization accuracy as compared to the applications involving only surveillance. The sharing of appropriate data between UASs can prove to be advantageous when compared to a single UAS, in terms of improving the positioning accuracy and reliability particularly in partially or completely GNSS denied environments. This research aims to integrate low cost positioning sensors and cooperative localization technique for a network of UASs. Our hypothesis is that it is possible to achieve high accurate, real-time localization of each of the nodes in the network even with cheaper sensors if the nodes of the network share information among themselves. This hypothesis is validated using simulations and the results are analyzed both for centralized and distributed estimation architectures. At first, the results are studied for a two node network which is then expanded for a network containing more number of nodes. Having more nodes in the network allows us to study the properties of the network including the effect of size and shape of the network on accuracy of the nodes.

  10. Use of Unmanned Aircraft System (UAS) in Response to the 2014 Eruption of Ontake Volcano, Japan

    NASA Astrophysics Data System (ADS)

    Mori, T.; Hashimoto, T.; Terada, A.; Shinohara, H.; Kazahaya, R.; Yoshimoto, M.; Tanaka, R.

    2015-12-01

    On Sept. 27, 2014, a phreatic eruption occurred at Ontake volcano (3067 m a.s.l.), central Japan. The eruption caused an unprecedented volcanic disaster in the last 70 years in Japan. Search and rescue operations started soon after the eruption until they were suspended due to snowfall in late October. Considering the potential hazards of further explosive events and the severe winter condition, an approach to the summit area after late October was very difficult. To reveal the condition of the volcanic activity and foresee the trend, we considered it important to carry out volcanic gas surveys for the dense plumes in the vicinity of the vents using an unmanned aircraft system (UAS). For the surveys at Ontake volcano, the UAS was expected to fly about 8 km roundtrip distance at an altitude of over 3000 m. A multicopter with 8 rotors was adopted and we targeted four types of plume monitoring using the UAS; in-plume monitoring of multiple gas concentrations, SO2 flux measurement with UV spectroscopy, thermography of the vents, and in-plume particle sampling. In order to meet the 1 kg payload of the multicopter, some of the instruments were slimmed down.The UAS campaigns at Ontake volcano were carried out on Nov. 20-21, 2014 and on Jun. 2, 2015 from the safety distance of 3-3.5 km away from the crater. With the UAS surveys, we revealed that the SO2/H2S ratios of volcanic gas were closer to the hydrothermal origin instead of direct magma degassing. The second survey also pointed out that the SO2 emission decreased down below 10 ton/day by June 2015, by taking an advantage of flying the vicinity of the vents before the plume was diluted. Our surveys showed decreasing activity of the volcano, together with the advantages of using UAS in volcano monitoring for inaccessible conditions.

  11. The application of UAS towards tornado research and forecasting

    NASA Astrophysics Data System (ADS)

    Houston, A. L.; Argrow, B. M.; Frew, E.; Weiss, C.

    2014-12-01

    UAS hold significant potential to advance the understanding of tornadoes and improve tornado warning skill. While the current regulatory environment places limits on the application of UAS towards these ends, demonstrated success targeting tornadic and non-tornadic supercells proves the general feasibility of this work. In this presentation we will summarize the successes using UAS to collect data in the vicinity of supercell thunderstorms and discuss ways that these data, along with additional data collected in future field campaigns, can be used answer basic research questions concerning tornado formation and applied research questions concerning the value of UAS in the tornado warning decision process. The associative relationship between the rear-flank downdraft (RFD) and tornadogenesis has long been recognized. Yet, despite decades of research focused on tornadoes, the causal relationship between the RFD and tornadogenesis remains unresolved. In the presentation, we will describe ways that UAS could be used to test hypotheses posed to explain this causal relationship. We will also present a strategy to quantify the impact of UAS on tornado warning skill. Through controlled forecast experiments conducted using data collected through small field campaigns that leverage prior success targeting supercell thunderstorms with UAS, the value of targeted surveillance of potentially tornadic storms using UAS can be assessed. Significant changes to the existing regulatory environment are likely required for UAS, operated in a targeted surveillance mode, to contribute to improving tornado warning skill, but progress can be made today towards quantifying the impact that UAS could make.

  12. Uas Topographic Mapping with Velodyne LiDAR Sensor

    NASA Astrophysics Data System (ADS)

    Jozkow, G.; Toth, C.; Grejner-Brzezinska, D.

    2016-06-01

    Unmanned Aerial System (UAS) technology is nowadays willingly used in small area topographic mapping due to low costs and good quality of derived products. Since cameras typically used with UAS have some limitations, e.g. cannot penetrate the vegetation, LiDAR sensors are increasingly getting attention in UAS mapping. Sensor developments reached the point when their costs and size suit the UAS platform, though, LiDAR UAS is still an emerging technology. One issue related to using LiDAR sensors on UAS is the limited performance of the navigation sensors used on UAS platforms. Therefore, various hardware and software solutions are investigated to increase the quality of UAS LiDAR point clouds. This work analyses several aspects of the UAS LiDAR point cloud generation performance based on UAS flights conducted with the Velodyne laser scanner and cameras. The attention was primarily paid to the trajectory reconstruction performance that is essential for accurate point cloud georeferencing. Since the navigation sensors, especially Inertial Measurement Units (IMUs), may not be of sufficient performance, the estimated camera poses could allow to increase the robustness of the estimated trajectory, and subsequently, the accuracy of the point cloud. The accuracy of the final UAS LiDAR point cloud was evaluated on the basis of the generated DSM, including comparison with point clouds obtained from dense image matching. The results showed the need for more investigation on MEMS IMU sensors used for UAS trajectory reconstruction. The accuracy of the UAS LiDAR point cloud, though lower than for point cloud obtained from images, may be still sufficient for certain mapping applications where the optical imagery is not useful.

  13. Learning Behavior Characterization with Multi-Feature, Hierarchical Activity Sequences

    ERIC Educational Resources Information Center

    Ye, Cheng; Segedy, James R.; Kinnebrew, John S.; Biswas, Gautam

    2015-01-01

    This paper discusses Multi-Feature Hierarchical Sequential Pattern Mining, MFH-SPAM, a novel algorithm that efficiently extracts patterns from students' learning activity sequences. This algorithm extends an existing sequential pattern mining algorithm by dynamically selecting the level of specificity for hierarchically-defined features…

  14. Aspects of dem Generation from Uas Imagery

    NASA Astrophysics Data System (ADS)

    Greiwe, A.; Gehrke, R.; Spreckels, V.; Schlienkamp, A.

    2013-08-01

    Since a few years, micro UAS (unmanned aerial systems) with vertical take off and landing capabilities like quadro- or octocopter are used as sensor platform for Aerophotogrammetry. Since the restricted payload of micro UAS with a total weight up of 5 kg (payload only up to 1.5 kg), these systems are often equipped with small format cameras. These cameras can be classified as amateur cameras and it is often the case, that these systems do not meet the requirements of a geometric stable camera for photogrammetric measurement purposes. However, once equipped with a suitable camera system, an UAS is an interesting alternative to expensive manned flights for small areas. The operating flight height of the above described UAS is about 50 up to 150 meters above ground level. This low flight height lead on the one hand to a very high spatial resolution of the aerial imagery. Depending on the cameras focal length and the sensor's pixel size, the ground sampling distance (GSD) is usually about 1 up to 5 cm. This high resolution is useful especially for the automatic generation of homologous tie-points, which are a precondition for the image alignment (bundle block adjustment). On the other hand, the image scale depends on the object's height and the UAV operating height. Objects like mine heaps or construction sites show high variations of the object's height. As a result, operating the UAS with a constant flying height will lead to high variations in the image scale. For some processing approaches this will lead to problems e.g. the automatic tie-point generation in stereo image pairs. As precondition to all DEM generating approaches, first of all a geometric stable camera, sharp images are essentially. Well known calibration parameters are necessary for the bundle adjustment, to control the exterior orientations. It can be shown, that a simultaneous on site camera calibration may lead to misaligned aerial images. Also, the success rate of an automatic tie-point generation

  15. UAS-Based Radar Sounding of Ice

    NASA Astrophysics Data System (ADS)

    Hale, R. D.; Keshmiri, S.; Leuschen, C.; Ewing, M.; Yan, J. B.; Rodriguez-Morales, F.; Gogineni, S.

    2014-12-01

    The University of Kansas Center for Remote Sensing of Ice Sheets developed two Unmanned Aerial Systems (UASs) to support polar research. We developed a mid-range UAS, called the Meridian, for operating a radar depth sounder/imager at 195 MHz with an eight-element antenna array. The Meridian weighs 1,100 lbs, has a 26-foot wingspan, and a range of 950 nm at its full payload capacity of 120 lbs. Ice-penetrating radar performance drove the configuration design, though additional payloads and sensors were considered to ensure adaptation to multi-mission science payloads. We also developed a short range UAS called the G1X for operating a low-frequency radar sounder that operates at 14 and 35 MHz. The G1X weighs 85 lbs, has a 17-foot wingspan, and a range of about 60 nm per gallon of fuel. The dual-frequency HF/VHF radar depth sounder transmits at 100 W peak power at a pulse repetition frequency of 10 KHz and weighs approximately 4.5 lbs. We conducted flight tests of the G1X integrated with the radar at the Sub-glacial Lake Whillans ice stream and the WISSARD drill site. The tests included pilot-controlled and fully autonomous flights to collect data over closely-spaced lines to synthesize a 2-D aperture. We obtained clear bed echoes with a signal-to-noise (S/N) ratio of more than 50 dB at this location. These are the first-ever successful soundings of glacial ice with a UAS-based radar. Although ice attenuation losses in this location are low in comparison to more challenging targets, in-field performance improvements to the UAS and HF/VHF radar system enabled significant gains in the signal-to-noise ratio, such that the system can now be demonstrated on more challenging outlet glaciers. We are upgrading the G1X UAS and radar system for further tests and data collection in Greenland. We are reducing the weight and volume of the radar, which, when coupled with further reductions in airframe and avionics weight and a larger fuel bladder, will offer extended range. Finally

  16. Recommendations for UAS Crew Ratings. Pilot Ratings and Authorization Requirements for UAS

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This position paper is intended to recommend the minimum certificate and rating requirements for a pilot to operate an Unmanned Aircraft System (UAS) in the National Airspace System. The paper will recommend the minimum requirements based on the Knowledge, Skills, and Abilities (KSA) required of a UAS pilot and show how those compare to the KSAs required by regulation for manned-aircraft pilots. The paper will provide substantiation based on studies conducted using analyses, simulation and flight experience. The paper is not yet complete; only initial working material is included. The material provided describes the body of work completed thus far and the plan for remaining tasks to complete the recommendation. The HSI Pilot KSA document provides an analysis of the knowledge, skills, and abilities required for UAS operation in the NAS. It is the source document used for the position paper.

  17. Prediction of fine-tuned promoter activity from DNA sequence

    PubMed Central

    Siwo, Geoffrey; Rider, Andrew; Tan, Asako; Pinapati, Richard; Emrich, Scott; Chawla, Nitesh; Ferdig, Michael

    2016-01-01

    The quantitative prediction of transcriptional activity of genes using promoter sequence is fundamental to the engineering of biological systems for industrial purposes and understanding the natural variation in gene expression. To catalyze the development of new algorithms for this purpose, the Dialogue on Reverse Engineering Assessment and Methods (DREAM) organized a community challenge seeking predictive models of promoter activity given normalized promoter activity data for 90 ribosomal protein promoters driving expression of a fluorescent reporter gene. By developing an unbiased modeling approach that performs an iterative search for predictive DNA sequence features using the frequencies of various k-mers, inferred DNA mechanical properties and spatial positions of promoter sequences, we achieved the best performer status in this challenge. The specific predictive features used in the model included the frequency of the nucleotide G, the length of polymeric tracts of T and TA, the frequencies of 6 distinct trinucleotides and 12 tetranucleotides, and the predicted protein deformability of the DNA sequence. Our method accurately predicted the activity of 20 natural variants of ribosomal protein promoters (Spearman correlation r = 0.73) as compared to 33 laboratory-mutated variants of the promoters (r = 0.57) in a test set that was hidden from participants. Notably, our model differed substantially from the rest in 2 main ways: i) it did not explicitly utilize transcription factor binding information implying that subtle DNA sequence features are highly associated with gene expression, and ii) it was entirely based on features extracted exclusively from the 100 bp region upstream from the translational start site demonstrating that this region encodes much of the overall promoter activity. The findings from this study have important implications for the engineering of predictable gene expression systems and the evolution of gene expression in naturally occurring

  18. Anatomy of a microearthquake sequence on an active normal fault.

    PubMed

    Stabile, T A; Satriano, C; Orefice, A; Festa, G; Zollo, A

    2012-01-01

    The analysis of similar earthquakes, such as events in a seismic sequence, is an effective tool with which to monitor and study source processes and to understand the mechanical and dynamic states of active fault systems. We are observing seismicity that is primarily concentrated in very limited regions along the 1980 Irpinia earthquake fault zone in Southern Italy, which is a complex system characterised by extensional stress regime. These zones of weakness produce repeated earthquakes and swarm-like microearthquake sequences, which are concentrated in a few specific zones of the fault system. In this study, we focused on a sequence that occurred along the main fault segment of the 1980 Irpinia earthquake to understand its characteristics and its relation to the loading-unloading mechanisms of the fault system. PMID:22606366

  19. Anatomy of a microearthquake sequence on an active normal fault

    PubMed Central

    Stabile, T. A.; Satriano, C.; Orefice, A.; Festa, G.; Zollo, A.

    2012-01-01

    The analysis of similar earthquakes, such as events in a seismic sequence, is an effective tool with which to monitor and study source processes and to understand the mechanical and dynamic states of active fault systems. We are observing seismicity that is primarily concentrated in very limited regions along the 1980 Irpinia earthquake fault zone in Southern Italy, which is a complex system characterised by extensional stress regime. These zones of weakness produce repeated earthquakes and swarm-like microearthquake sequences, which are concentrated in a few specific zones of the fault system. In this study, we focused on a sequence that occurred along the main fault segment of the 1980 Irpinia earthquake to understand its characteristics and its relation to the loading-unloading mechanisms of the fault system. PMID:22606366

  20. Expanding the Envelope of UAS Certification: What it Takes to Type Certify a UAS for Precision Agricultural Spraying

    NASA Technical Reports Server (NTRS)

    Maddalon, J. M.; Hayhurst, K. J.; Neogi, N. A.; Verstynen, H. A.; Clothier, R. A.

    2016-01-01

    One of the key challenges to the development of a commercial Unmanned Air-craft System (UAS) market is the lack of explicit consideration of UAS in the current regulatory framework. Despite recent progress, additional steps are needed to enable broad UAS types and operational models. This paper discusses recent research that examines how a risk-based approach for safety might change the process and substance of airworthiness requirements for UAS. The project proposed risk-centric airworthiness requirements for a midsize un-manned rotorcraft used for agricultural spraying and also identified factors that may contribute to distinguishing safety risk among different UAS types and operational concepts. Lessons learned regarding how a risk-based approach can expand the envelope of UAS certification are discussed.

  1. Assessing UAS Flight Testing and It's Importance for Beyond-Line-of-Sight UAS Control in Cooperation with Partnering Organizations

    NASA Technical Reports Server (NTRS)

    de Jong, Daphne

    2015-01-01

    From the 1st of June until the 21st of August, the internship has been conducted at NASA Ames Research Center as part of the Master of Space Studies at the International Space University. The main activities consisted of doing research on UAV flight-­-testing and the assessing of safety with respect to Beyond-­-Line-­-Of-­-Sight operations. Further activities consisted of accommodating international partners and potential partners at the NASA Ames site, in order to identify mutual interest and future collaboration. Besides those activities, the report describes the planning process of the ISU Space Coast Trip to 10 different space related companies on the west-­-coast of California. Key words: UAS, UAV, BLOS, Ames, ISU Trip

  2. UAS Integration into the NAS: Unmanned Aircraft System (UAS) Delegation of Separation

    NASA Technical Reports Server (NTRS)

    Fern, Lisa Carolynn; Kenny, Caitlin Ailis

    2012-01-01

    FAA Modernization and Reform Act of 2012 mandates UAS integration in the NAS by 2015. Operators must be able to safely maneuver UAS to maintain separation and collision avoidance. Delegated Separation is defined as the transfer of responsibility for maintaining separation between aircraft or vehicles from the air navigation service provider to the relevant flight operator, and will likely begin in sparsely trafficked areas before moving to more heavily populated airspace. As UAS operate primarily in areas with lower traffic density and perform maneuvers routinely that are currently managed through special handling, they have the advantage of becoming an early adopter of delegated separation. This experiment will examine if UAS are capable of performing delegated separation in 5 nm horizontal and 1000 ft vertical distances under two delegation conditions. In Extended Delegation, ATC are in charge of identifying problems and delegating to pilot identification and implementation of the solution and monitoring. In Full Delegation, the pilots are responsible for all tasks related to separation assurance: identification of problems and solutions, implementation and monitoring.

  3. Kīlauea June 27th Lava Flow Hazard Mapping and Disaster Response with UAS

    NASA Astrophysics Data System (ADS)

    Turner, N.; Perroy, R. L.; Hon, K. A.; Rasgado, V.

    2015-12-01

    In June of 2014, pāhoehoe lava flows from the Púu ´Ō´ō eruption began threatening communities and infrastructure on eastern Hawaii Island. During the subsequent declared state of emergency by Hawaii Civil Defense and temporary flight restriction by the Federal Aviation Administration (FAA), we used a small fixed-wing Unmanned Aircraft System (UAS) to collect high spatial and temporal resolution imagery over the active flow in support of natural hazard assessment by emergency managers. Integration of our UAS into busy airspace, populated by emergency aircraft and tour helicopters, required close operational coordination with the FAA and local operators. We logged >80 hours of UAS flight operations between October 2014 and March 2015, generating a dense time-series of 4-5 cm resolution imagery and derived topographic datasets using structure from motion. These data were used to monitor flow activity, document pre- and post- lava flow damage, identify hazardous areas for first responders, and model lava flow paths in complex topography ahead of the active flow front. Turnaround times for delivered spatial data products improved from 24-48 hours at the beginning of the study to ~2-4 hours by the end. Data from this project are being incorporated into cloud computing applications to shorten delivery time and extract useful analytics regarding lava flow hazards in near real-time. The lessons learned from this event have advanced UAS integration in disaster operations in U.S. airspace and show the high potential UAS hold for natural hazards assessment and real-time emergency management.

  4. Sequence-specific DNA primer effects on telomerase polymerization activity.

    PubMed Central

    Lee, M S; Blackburn, E H

    1993-01-01

    The ribonucleoprotein enzyme telomerase synthesizes one strand of telomeric DNA by copying a template sequence within the RNA moiety of the enzyme. Kinetic studies of this polymerization reaction were used to analyze the mechanism and properties of the telomerase from Tetrahymena thermophila. This enzyme synthesizes TTGGGG repeats, the telomeric DNA sequence of this species, by elongating a DNA primer whose 3' end base pairs with the template-forming domain of the RNA. The enzyme was found to act nonprocessively with short (10- to 12-nucleotide) primers but to become processive as TTGGGG repeats were added. Variation of the 5' sequences of short primers with a common 3' end identified sequence-specific effects which are distinct from those involving base pairing of the 3' end of the primer with the RNA template and which can markedly induce enzyme activity by increasing the catalytic rate of the telomerase polymerization reaction. These results identify an additional mechanistic basis for telomere and DNA end recognition by telomerase in vivo. Images PMID:8413255

  5. Pre- and main-sequence evolution of solar activity

    NASA Technical Reports Server (NTRS)

    Walter, Frederick M.; Barry, Don C.

    1991-01-01

    The magnetic activity on single solarlike stars declines with stellar age. This has important consequences for the influence of the sun on the early solar system. What is meant by stellar activity, and how it is measured, is reviewed. Stellar activity on the premain-sequence phase of evolution is discussed; the classical T Tauri stars do not exhibit solarlike activity, while the naked T Tauri stars do. The emission surface fluxes of the naked T Tauri stars are similar to those of the youngest main-sequence G stars. The best representation for solarlike stars is a decay proportional to exp(A x t exp 0.5), where A is a function of line excitation temperature. From these decay laws, one can determine the interdependences of the activity, age, and rotation periods. The fluxes of ionizing photons at the earth early in its history are discussed; there was sufficient fluence to account for the observed isotopic ratios of the noble gases.

  6. UAS remote sensing for precision agriculture: An independent assessment

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Small Unmanned Aircraft Systems (sUAS) are recognized as potentially important remote-sensing platforms for precision agriculture. However, research is required to determine which sensors and data processing methods are required to use sUAS in an efficient and cost-effective manner. Oregon State U...

  7. Uas for Geo-Information Current Status and Perspectives

    NASA Astrophysics Data System (ADS)

    Haarbrink, R. B.

    2011-09-01

    Recent and ongoing developments of state-of-the-art sensor technologies have resulted in smaller and lighter photogrammetric cameras with IMU, lidar scanners and other sensors that can now be integrated with and mounted on the larger Light UAS. This paper describes as an example the successful automatic flight of the 50-megapixel DigiCAM with AEROcontrol IMU developed by IGI flown on Geocopter's GC-201 unmanned helicopter system. The operational and technical requirements of UAS defined in new legislation remain however the safeguard to protect people and costly sensor payload assets. The current prospects of UAS-g face additional challenges related to end-user awareness and the return on investment. The current status of UAS legislation is given in this paper. This legislation justifies UAS-g operations of mapping coastal zones, forests, agricultural fields, and open mines. Sooner return on investment happens when the UAS legislation will be opening up airspace over urban areas (Class 2 approved UAS-g), to longer distances (BLOS operations), and to higher altitudes. UAS-g flights then become feasible to the maximum extent for cadastral mapping of larger areas, oil and gas pipeline monitoring, power line surveys, dike inspection, and highway and railway mapping.

  8. Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae.

    PubMed Central

    Huie, M A; Scott, E W; Drazinic, C M; Lopez, M C; Hornstra, I K; Yang, T P; Baker, H V

    1992-01-01

    GCR1 gene function is required for high-level glycolytic gene expression in Saccharomyces cerevisiae. Recently, we suggested that the CTTCC sequence motif found in front of many genes encoding glycolytic enzymes lay at the core of the GCR1-binding site. Here we mapped the DNA-binding domain of GCR1 to the carboxy-terminal 154 amino acids of the polypeptide. DNase I protection studies showed that a hybrid MBP-GCR1 fusion protein protected a region of the upstream activating sequence of TPI (UASTPI), which harbored the CTTCC sequence motif, and suggested that the fusion protein might also interact with a region of the UAS that contained the related sequence CATCC. A series of in vivo G methylation protection experiments of the native TPI promoter were carried out with wild-type and gcr1 deletion mutant strains. The G doublets that correspond to the C doublets in each site were protected in the wild-type strain but not in the gcr1 mutant strain. These data demonstrate that the UAS of TPI contains two GCR1-binding sites which are occupied in vivo. Furthermore, adjacent RAP1/GRF1/TUF- and REB1/GRF2/QBP/Y-binding sites in UASTPI were occupied in the backgrounds of both strains. In addition, DNA band-shift assays were used to show that the MBP-GCR1 fusion protein was able to form nucleoprotein complexes with oligonucleotides that contained CTTCC sequence elements found in front of other glycolytic genes, namely, PGK, ENO1, PYK, and ADH1, all of which are dependent on GCR1 gene function for full expression. However, we were unable to detect specific interactions with CTTCC sequence elements found in front of the translational component genes TEF1, TEF2, and CRY1. Taken together, these experiments have allowed us to propose a consensus GCR1-binding site which is 5'-(T/A)N(T/C)N(G/A)NC(T/A)TCC(T/A)N(T/A)(T/A)(T/G)-3'. Images PMID:1588965

  9. Spectrum for UAS Control and Non-Payload Communications

    NASA Technical Reports Server (NTRS)

    Kerczewski, Robert J.

    2013-01-01

    There is an increasing need to fly UAS in the NAS to perform missions of vital importance to National Security and Defense, Emergency Management, and Science as well as commercial applications (e.g. cargo transport). To enable integration of UAS into the National Airspace System, several critical technical barriers must be eliminated, including: Separation Assurance/Sense and Avoid - the uncertainty surrounding the ability to interoperate in ATC environments and maintain safe separation from other aircraft in the absence of an on-board pilot. Human Systems Integration - lack of standards and guidelines with respect to UAS display information as well as lack of Ground Control Station (GCS) design requirements to operate in the NAS. Certification - lack of airworthiness requirements and safety-related data specific to the full range of UAS, or for their avionics systems or other components. Communications - lack of standard, certifiable data links and aviation safety spectrum to operate such links for civil UAS control communications.

  10. Copying of RNA Sequences without Pre-Activation

    PubMed Central

    Jauker, Mario; Griesser, Helmut; Richert, Clemens

    2015-01-01

    Template-directed incorporation of nucleotides at the terminus of a growing complementary strand is the basis of replication. For RNA, this process can occur in the absence of enzymes, if the ribonucleotides are first converted to an active species with a leaving group. Thus far, the activation required a separate chemical step, complicating prebiotically plausible scenarios. Here we show that a combination of a carbodiimide and an organocatalyst induces near-quantitative incorporation of any of the four ribonucleotides. Upon in situ activation, adenosine monophosphate was found to also form oligomers in aqueous solution. So, both de novo strand formation and sequence-specific copying can occur without an artificial synthetic step. PMID:26435291

  11. The Main Sequence of Explosive Solar Active Regions: Comparison of Emerging and Mature Active Regions

    NASA Technical Reports Server (NTRS)

    Falconer, David; Moore, Ron

    2011-01-01

    For mature active regions, an active region s magnetic flux content determines the maximum free energy the active region can have. Most Large flares and CMEs occur in active regions that are near their free-energy limit. Active-region flare power radiated in the GOES 1-8 band increases steeply as the free-energy limit is approached. We infer that the free-energy limit is set by the rate of release of an active region s free magnetic energy by flares, CMEs and coronal heating balancing the maximum rate the Sun can put free energy into the active region s magnetic field. This balance of maximum power results in explosive active regions residing in a "mainsequence" in active-region (flux content, free energy content) phase space, which sequence is analogous to the main sequence of hydrogen-burning stars in (mass, luminosity) phase space.

  12. The new UA1 calorimeter trigger processor

    SciTech Connect

    Baird, S.A.; Campbell, D.; Cawthraw, M.; Coughlan, J.; Flynn, P.; Galagadera, S.; Grayer, G.; Halsall, R.; Shah, T.P.; Stephens, R.

    1989-02-01

    The UA1 First Level Trigger Processor (TP) is a fast digital machine with a highly parallel pipelined architecture of fast TTL combinational and programmable logic controlled by programmable microsequencers. The TP uses 100,000 IC's housed in 18 crates each containing 21 fastbus sized modules. It is hardwired with a very high level of interconnection. The energy deposited in the upgraded calorimeter is digitised into 1700 bytes of input data every beam crossing. The Processor selects in 1.5 microseconds events for further processing. The new electron trigger has improved hadron jet rejection, achieved by requiring low energy deposition around the electro-magnetic cluster. A missing transverse energy trigger and a total energy trigger have also been implemented.

  13. Gaze interaction in UAS video exploitation

    NASA Astrophysics Data System (ADS)

    Hild, Jutta; Brüstle, Stefan; Heinze, Norbert; Peinsipp-Byma, Elisabeth

    2013-05-01

    A frequently occurring interaction task in UAS video exploitation is the marking or selection of objects of interest in the video. If an object of interest is visually detected by the image analyst, its selection/marking for further exploitation, documentation and communication with the team is a necessary task. Today object selection is usually performed by mouse interaction. As due to sensor motion all objects in the video move, object selection can be rather challenging, especially if strong and fast and ego-motions are present, e.g., with small airborne sensor platforms. In addition to that, objects of interest are sometimes too shortly visible to be selected by the analyst using mouse interaction. To address this issue we propose an eye tracker as input device for object selection. As the eye tracker continuously provides the gaze position of the analyst on the monitor, it is intuitive to use the gaze position for pointing at an object. The selection is then actuated by pressing a button. We integrated this gaze-based "gaze + key press" object selection into Fraunhofer IOSB's exploitation station ABUL using a Tobii X60 eye tracker and a standard keyboard for the button press. Representing the object selections in a spatial relational database, ABUL enables the image analyst to efficiently query the video data in a post processing step for selected objects of interest with respect to their geographical and other properties. An experimental evaluation is presented, comparing gaze-based interaction with mouse interaction in the context of object selection in UAS videos.

  14. UAS Detection Classification and Neutralization: Market Survey 2015

    SciTech Connect

    Birch, Gabriel Carisle; Griffin, John Clark; Erdman, Matthew Kelly

    2015-07-01

    The purpose of this document is to briefly frame the challenges of detecting low, slow, and small (LSS) unmanned aerial systems (UAS). The conclusion drawn from internal discussions and external reports is the following; detection of LSS UAS is a challenging problem that can- not be achieved with a single detection modality for all potential targets. Classification of LSS UAS, especially classification in the presence of background clutter (e.g., urban environment) or other non-threating targets (e.g., birds), is under-explored. Though information of avail- able technologies is sparse, many of the existing options for UAS detection appear to be in their infancy (when compared to more established ground-based air defense systems for larger and/or faster threats). Companies currently providing or developing technologies to combat the UAS safety and security problem are certainly worth investigating, however, no company has provided the statistical evidence necessary to support robust detection, identification, and/or neutralization of LSS UAS targets. The results of a market survey are included that highlights potential commercial entities that could contribute some technology that assists in the detection, classification, and neutral- ization of a LSS UAS. This survey found no clear and obvious commercial solution, though recommendations are given for further investigation of several potential systems.

  15. UAS Modeling of the Communication Links Study Results

    NASA Technical Reports Server (NTRS)

    Birr, Richard B.; Girgis, Nancy; Murray, Jennifer

    2011-01-01

    The Federal Aviation Administration (FAA) is the authority that grants access into, and operations within, the National Airspace System (NAS) for all aircraft, including Unmanned Aircraft Systems (UAS). The safe operation of UAS in the NAS must be assured if the full potential of UAS is to be realized and supported by the public and Congress. This report analyzed the communication systems that are needed for the safe operations of UAS in the NAS. Safe operations can be defined as the availability of the required links to carry the information to control the UAS and the return links to allow controllers to know where the UAS is at any given moment as well as how it is performing. This report is the end result of work performed jointly between the FAA and National Aeronautics and Space Administration (NASA)/Kennedy Space Center (NASA KSC). The work was done in support of the Radio Technical Commission for Aeronautics (RTCA) Special Committee 203 (SC-203) Control and Communications Working Group. The RTCA is a federal advisory committee to the FAA. Though the work was not under the direction of the working group, a large part of the specific values used in the simulations came from the working group. Specifically, all of the radio links were modeled based on the formulation completed by the working group. This report analyzed three scenarios from RTCA SC-203 that represent how a UAS would operate in the NAS. Each scenario was created using the Satellite Tool Kit (STK) modeling and simulation tool. The flight paths of the UAS were generated and the UAS dynamics were likewise modeled. Then each communication asset such as transmitters, receivers, and antennas were modeled and placed on the appropriate UAS, satellite, or Control Station (CS). After that, the radio links were analyzed for signal strength and antenna blockage, and the overall link performance was analyzed in detail. The goal was to obtain 99.9% availability on all of the radio communication links. In order

  16. Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites.

    PubMed Central

    Cannon, W V; Kreutzer, R; Kent, H M; Morett, E; Buck, M

    1990-01-01

    The Klebsiella pneumoniae nifU promoter is positively controlled by the NifA protein and requires a form of RNA polymerase holoenzyme containing the rpoN encoded sigma factor, sigma 54. Occupancy of the K. pneumoniae nifU promoter by NifA was examined using in vivo dimethyl sulphate footprinting. Three binding sites for NifA (Upstream Activator Sequences, UASs 1, 2 and 3) located at -125, -116 and -72 were identified which conform to the UAS consensus sequence TGT-N10-ACA. An additional NifA binding site was identified at position -90. The UASs located at -125 (UAS1) and -116 (UAS2) overlap and do not appear to bind NifA as independent sites. They may represent a NifA binding site interacting with two NifA dimers. UAS3 is located at -72, and abuts a binding site for integration host factor (IHF) and is not normally highly occupied by NifA. In the absence of IHF UAS3 showed increased occupancy by NifA. Mutational and footprinting analysis of the three UASs indicates (1) IHF and NifA can compete for binding and that this competition influences the level of expression from the nifU promoter (2) that UAS2 is a principle sequence of the UAS 1,2 region required for activation and (3) that none of the NifA binding sites interacts with NifA independently. In vivo KMnO4 footprinting demonstrated that NifA catalyses open complex formation at the nifU promoter. IHF was required for maximal expression from the nifU and nifH promoters in Escherichia coli, and for the establishment of a Nif+ phenotype in E. coli from the nif plasmid pRD1. Images PMID:2186362

  17. Ursolic acid (UA): A metabolite with promising therapeutic potential.

    PubMed

    Kashyap, Dharambir; Tuli, Hardeep Singh; Sharma, Anil K

    2016-02-01

    Plants are known to produce a variety of bioactive metabolites which are being used to cure various life threatening and chronic diseases. The molecular mechanism of action of such bioactive molecules, may open up new avenues for the scientific community to develop or improve novel therapeutic approaches to tackle dreadful diseases such as cancer and cardiovascular and neurodegenerative disorders. Ursolic acid (UA) is one among the categories of such plant-based therapeutic metabolites having multiple intracellular and extracellular targets that play role in apoptosis, metastasis, angiogenesis and inflammatory processes. Moreover, the synthetic derivatives of UA have also been seen to be involved in a range of pharmacological applications, which are associated with prevention of diseases. Evidences suggest that UA could be used as a potential candidate to develop a comprehensive competent strategy towards the treatment and prevention of health disorders. The review article herein describes the possible therapeutic effects of UA along with putative mechanism of action. PMID:26775565

  18. NASA UAS Integration into the NAS Project: Human Systems Integration

    NASA Technical Reports Server (NTRS)

    Shively, Jay

    2016-01-01

    This presentation provides an overview of the work the Human Systems Integration (HSI) sub-project has done on detect and avoid (DAA) displays while working on the UAS (Unmanned Aircraft System) Integration into the NAS project. The most recent simulation on DAA interoperability with Traffic Collision Avoidance System (TCAS) is discussed in the most detail. The relationship of the work to the larger UAS community and next steps are also detailed.

  19. NASA GRC UAS Project: Communications Modeling and Simulation Status

    NASA Technical Reports Server (NTRS)

    Kubat, Greg

    2013-01-01

    The integration of Unmanned Aircraft Systems (UAS) in the National Airspace represents new operational concepts required in civil aviation. These new concepts are evolving as the nation moves toward the Next Generation Air Transportation System (NextGen) under the leadership of the Joint Planning and Development Office (JPDO), and through ongoing work by the Federal Aviation Administration (FAA). The desire and ability to fly UAS in the National Air Space (NAS) in the near term has increased dramatically, and this multi-agency effort to develop and implement a national plan to successfully address the challenges of UAS access to the NAS in a safe and timely manner is well underway. As part of the effort to integrate UAS in the National Airspace, NASA Glenn Research Center is currently involved with providing research into Communications systems and Communication system operations in order to assist with developing requirements for this implementation. In order to provide data and information regarding communication systems performance that will be necessary, NASA GRC is tasked with developing and executing plans for simulations of candidate future UAS command and control communications, in line with architectures and communications technologies being developed and/or proposed by NASA and relevant aviation organizations (in particular, RTCA SC-203). The simulations and related analyses will provide insight into the ability of proposed communications technologies and system architectures to enable safe operation of UAS, meeting UAS in the NAS project goals (including performance requirements, scalability, and interoperability), and ultimately leading to a determination of the ability of NextGen communication systems to accommodate UAS. This presentation, compiled by the NASA GRC team, will provide a view of the overall planned simulation effort and objectives, a description of the simulation concept and status of the design and development that has occurred to date.

  20. The Sequence of Learning Cycle Activities in High School Chemistry.

    ERIC Educational Resources Information Center

    Abraham, Michael R.; Renner, John W.

    1986-01-01

    Different learning cycle sequences were investigated to determine factors accounting for success of the cycle, compared learning with conventional instruction, and examined relationships between Piaget's theory and learning cycles. Results show that the normal learning cycle sequence is the optimum sequence for achievement of content knowledge in…

  1. UAS Modeling of the Communication Links Study Results

    NASA Technical Reports Server (NTRS)

    Birr, Richard; Murray, Jennifer; Girgis, nancy

    2011-01-01

    There were many links calculated for this and the other scenarios. The rain was analyzed for 99.9% availability with rain rated of none, 20 mm/hr and 90 mm/hr at a height of 5 km out to 25 NM. This was done for each scenario for LOS and for BLOS links for Scenario 5 and 6. Scenario 1 was a LOS-only scenario. Use of two 3 dB Antennas on both ends. The CS2 was unable to maintain a control RF Link during the flight. The largest access gap periods between object top and bottom UA antennae were caused by terrain (ridges and hills). The CS Antenna was changed to High Gain Directional Antenna, all three CS maintained lock on vehicle. There were RF dropouts between the top and bottom UA antennae caused by aircraft obstructions (fuselage, wings, wheel assembles, etc.). Note that for this study antenna locations were placed on top and bottom center of the UA body. Future study should include actual UA antenna locations on the aircraft providing manufactures are willing to provide information. The importance of CS location(s) was demonstrated for primary or backup CS. With a second backup CS placed in a suitable location the UA was able to maintain an overall RF link. The actual location of both backup CSs required the antenna location to be place 150 ft above ground in order to establish a RF link between the UA and CS.

  2. HALE UAS Concept of Operations. Version 3.0

    NASA Technical Reports Server (NTRS)

    2006-01-01

    This document is a system level Concept of Operations (CONOPS) from the perspective of future High Altitude Long Endurance (HALE) Unmanned Aircraft Systems (UAS) service providers and National Airspace System (NAS) users. It describes current systems (existing UAS), describes HALE UAS functions and operations to be performed (via sample missions), and offers insight into the user s environment (i.e., the UAS as a system of systems). It is intended to be a source document for NAS UAS operational requirements, and provides a construct for government agencies to use in guiding their regulatory decisions, architecture requirements, and investment strategies. Although it does not describe the technical capabilities of a specific HALE UAS system (which do, and will vary widely), it is intended to aid in requirements capture and to be used as input to the functional requirements and analysis process. The document provides a basis for development of functional requirements and operational guidelines to achieve unrestricted access into the NAS. This document is an FY06 update to the FY05 Access 5 Project-approved Concept of Operations document previously published in the Public Domain on the Access 5 open website. This version is recommended to be approved for public release also. The updates are a reorganization of materials from the previous version with the addition of an updated set of operational requirements, inclusion of sample mission scenarios, and identification of roles and responsibilities of interfaces within flight phases.

  3. UAS-Systems Integration, Validation, and Diagnostics Simulation Capability

    NASA Technical Reports Server (NTRS)

    Buttrill, Catherine W.; Verstynen, Harry A.

    2014-01-01

    As part of the Phase 1 efforts of NASA's UAS-in-the-NAS Project a task was initiated to explore the merits of developing a system simulation capability for UAS to address airworthiness certification requirements. The core of the capability would be a software representation of an unmanned vehicle, including all of the relevant avionics and flight control system components. The specific system elements could be replaced with hardware representations to provide Hardware-in-the-Loop (HWITL) test and evaluation capability. The UAS Systems Integration and Validation Laboratory (UAS-SIVL) was created to provide a UAS-systems integration, validation, and diagnostics hardware-in-the-loop simulation capability. This paper discusses how SIVL provides a robust and flexible simulation framework that permits the study of failure modes, effects, propagation paths, criticality, and mitigation strategies to help develop safety, reliability, and design data that can assist with the development of certification standards, means of compliance, and design best practices for civil UAS.

  4. Observing of entrainment using small UAS

    NASA Astrophysics Data System (ADS)

    Martin, S.; Bange, J.; Beyrich, F.

    2012-04-01

    Entrainment processes between the atmospheric boundary layer and the free atmosphere are important concerning vertical exchange of momentum, energy, water vapor, trace gases and aerosol. The transition zone between the convectively mixed boundary layer and the stably stratified free atmosphere is called the entrainment zone (EZ). The EZ restrains the domain of turbulence by a temperature inversion and acts as a lid to pollutants. Measurement flights of the mini meteorological aerial vehicle (M2AV) of the Technische Universität Braunschweig were performed in spring 2011 to determine the capability of the unmanned aerial system (UAS) to measure the structure of the EZ. The campaign took place at the Meteorological Observatory Lindenberg / Richard-Aßmann-Observatory of the German Meteorological Service, which is located close to Berlin. Besides the M2AV flights, standard observations were performed by a 12 m and 99 m tower, a sodar, ceilometer and radiosondes. A tethered balloon with measurement units at six different levels was operated especially for this campaign. The measurements of these systems were used to determine the inversion layer and to capture its diurnal cycle. The talk will be focused on vertical profiles of the M2AV up to the free atmosphere, detailed analysis of spatial series of w'θ' at different altitudes and on vertical profiles of normalized variances of the vertical wind component and the potential temperature.

  5. Biosorption behavior and mechanism of cesium-137 on Rhodosporidium fluviale strain UA2 isolated from cesium solution.

    PubMed

    Lan, Tu; Feng, Yue; Liao, Jiali; Li, Xiaolong; Ding, Congcong; Zhang, Dong; Yang, Jijun; Zeng, Junhui; Yang, Yuanyou; Tang, Jun; Liu, Ning

    2014-08-01

    In order to identify a more efficient biosorbent for (137)Cs, we have investigated the biosorption behavior and mechanism of (137)Cs on Rhodosporidium fluviale (R. fluviale) strain UA2, one of the dominant species of a fungal group isolated from a stable cesium solution. We observed that the biosorption of (137)Cs on R. fluviale strain UA2 was a fast and pH-dependent process in the solution composed of R. fluviale strain UA2 (5 g/L) and cesium (1 mg/L). While a Langmuir isotherm equation indicated that the biosorption of (137)Cs was a monolayer adsorption, the biosorption behavior implied that R. fluviale strain UA2 adsorbed cesium ions by electrostatic attraction. The TEM analysis revealed that cesium ions were absorbed into the cytoplasm of R. fluviale strain UA2 across the cell membrane, not merely fixed on the cell surface, which implied that a mechanism of metal uptake contributed largely to the cesium biosorption process. Moreover, PIXE and EPBS analyses showed that ion-exchange was another biosorption mechanism for the cell biosorption of (137)Cs, in which the decreased potassium ions were replaced by cesium ions. All the above results implied that the biosorption of (137)Cs on R. fluviale strain UA2 involved a two-step process. The first step is passive biosorption that cesium ions are adsorbed to cells surface by electrostatic attraction; after that, the second step is active biosorption that cesium ions penetrate the cell membrane and accumulate in the cytoplasm. PMID:24631916

  6. The application of unmanned aerial systems (UAS) in geophysical investigations of geothermal systems

    NASA Astrophysics Data System (ADS)

    Glen, J. M.; Egger, A. E.; Ippolito, C.; Phelps, G. A.; Berthold, R.; Lee, R.; Spritzer, J. M.; Tchernychev, M.

    2012-12-01

    Investigations of geothermal systems typically involve ground-based geological and geophysical studies in order to map structures that control and facilitate fluid flow. The spatial extent of ground-based investigations can be limited, however, by surficial hot springs, dense foliage, and roadless or private lands. This can result in data gaps in key areas, particularly around active hydrothermal springs. Manned aircraft can provide access to these areas and can yield broad and uniform data coverage, but high-resolution surveys are costly and relatively inflexible to changes in the survey specifications that may arise as data are collected. Unmanned aerial systems (UAS) are well suited for conducting these surveys, but until recently, various factors (scientific instrumentation requirements, platform limitations, and size of the survey area) have required the use of large UAS platforms, rendering unmanned aerial surveys unsuitable for most investigations. We have developed and tested a new cesium magnetometer system to collect magnetic data using two different small-platform UAS that overcomes many of the challenges described above. We are deploying this new system in Surprise Valley, CA, to study the area's active geothermal field. Surprise Valley is ideally suited to testing UAS due to its low population density, accessible airspace, and broad playa that provides ample opportunity to safely land the aircraft. In combination with gravity and topographic data, magnetic data are particularly useful for identifying buried, intra-basin structures, especially in areas such as Surprise Valley where highly magnetic, dense mafic volcanic rocks are interbedded with and faulted against less magnetic, less dense sedimentary rock. While high-resolution gravity data must be collected at point locations on the ground, high-resolution magnetic data can be obtained by UAS that provide continuous coverage. Once acquired, the magnetic data obtained by the UAS will be combined with

  7. Enabling Earth Science Measurements with NASA Uas Capabilities

    NASA Astrophysics Data System (ADS)

    Albertson, R.; Schoenung, S.; Fladeland, M.; Cutler, F.; Tagg, B.

    2015-04-01

    NASA's Airborne Science Program (ASP) maintains a fleet of manned and unmanned aircraft for Earth Science measurements and observations. The unmanned aircraft systems (UAS) range in size from very large (Global Hawks) to medium (SIERRA, Viking) and relatively small (DragonEye). UAS fly from very low (boundary layer) to very high altitude (stratosphere). NASA also supports science and applied science projects using UAS operated by outside companies or agencies. The aircraft and accompanying data and support systems have been used in numerous investigations. For example, Global Hawks have been used to study both hurricanes and atmospheric composition. SIERRA has been used to study ice, earthquake faults, and coral reefs. DragonEye is being used to measure volcanic emissions. As a foundation for NASA's UAS work, Altair and Ikhana not only flew wildfires in the US, but also provided major programs for the development of real-time data download and processing capabilities. In 2014, an advanced L-band Synthetic Aperture Radar flew for the first time on Global Hawk, demonstrating UAVSAR, which has been flying successfully on a manned aircraft. This paper focuses on two topics: 1) results of a NASA program called UAS-Enabled Earth Science, in which three science teams flew UAS to demonstrate platform and sensor performance, airspace integration, and applied science results from the data collected; 2) recent accomplishments with the high altitude, long-duration Global Hawks. The challenges experienced with flying UAS are discussed. Recent upgrades to data processing, communications, tracking and flight planning systems are described.

  8. UAS-NAS Project Demo - Mini HITL Week 2 Stats

    NASA Technical Reports Server (NTRS)

    Murphy, James R.; Fern, Lisa C.; Rorie, Robert C.; Shively, Robert; Jovic, Srboljub

    2016-01-01

    The UAS-NAS Project demo will showcase recent research efforts to ensure the interoperability between proposed UAS detect and avoid (DAA) human machine interface requirements (developed within RTCA SC-228) and existing collision avoidance displays. Attendees will be able to view the current state of the art of the DAA pilot traffic, alerting and guidance displays integrated with Traffic advisory and Collision Avoidance (TCAS) II in the UAS-NAS Project's research UAS ground control station (developed in partnership with the Air Force Research Laboratory). In addition, attendees will have the opportunity to interact with the research UAS ground control station and "fly" encounters, using the DAA and TCAS II displays to avoid simulated aircraft. The display of the advisories will be hosted on a laptop with an external 30" monitor, running the Vigilant Spirit system. DAA advisories will be generated by the JADEM software tool, connected to the system via the LVC Gateway. A repeater of the primary flight display will be shown on a 55" monitor mounted on a stand at the back of the booth to show the pilot interaction to the passersby.

  9. Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation.

    PubMed

    Verdone, L; Camilloni, G; Di Mauro, E; Caserta, M

    1996-05-01

    We have analyzed at both low and high resolution the distribution of nucleosomes over the Saccharomyces cerevisiae ADH2 promoter region in its chromosomal location, both under repressing (high-glucose) conditions and during derepression. Enzymatic treatments (micrococcal nuclease and restriction endonucleases) were used to probe the in vivo chromatin structure during ADH2 gene activation. Under glucose-repressed conditions, the ADH2 promoter was bound by a precise array of nucleosomes, the principal ones positioned at the RNA initiation sites (nucleosome +1), at the TATA box (nucleosome -1), and upstream of the ADR1-binding site (UAS1) (nucleosome -2). The UAS1 sequence and the adjacent UAS2 sequence constituted a nucleosome-free region. Nucleosomes -1 and +1 were destabilized soon after depletion of glucose and had become so before the appearance of ADH2 mRNA. When the transcription rate was high, nucleosomes -2 and +2 also underwent rearrangement. When spheroplasts were prepared from cells grown in minimal medium, detection of this chromatin remodeling required the addition of a small amount of glucose. Cells lacking the ADR1 protein did not display any of these chromatin modifications upon glucose depletion. Since the UAS1 sequence to which Adr1p binds is located immediately upstream of nucleosome -1, Adr1p is presumably required for destabilization of this nucleosome and for aiding the TATA-box accessibility to the transcription machinery. PMID:8628264

  10. An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones.

    PubMed

    Tirunagaru, V G; Sofer, L; Cui, J; Burnside, J

    2000-06-01

    The cDNA and gene sequences of many mammalian cytokines and their receptors are known. However, corresponding information on avian cytokines is limited due to the lack of cross-species activity at the functional level or strong homology at the molecular level. To improve the efficiency of identifying cytokines and novel chicken genes, a directionally cloned cDNA library from T-cell-enriched activated chicken splenocytes was constructed, and the partial sequence of 5251 clones was obtained. Sequence clustering indicates that 2357 (42%) of the clones are present as a single copy, and 2961 are distinct clones, demonstrating the high level of complexity of this library. Comparisons of the sequence data with known DNA sequences in GenBank indicate that approximately 25% of the clones match known chicken genes, 39% have similarity to known genes in other species, and 11% had no match to any sequence in the database. Several previously uncharacterized chicken cytokines and their receptors were present in our library. This collection provides a useful database for cataloging genes expressed in T cells and a valuable resource for future investigations of gene expression in avian immunology. A chicken EST Web site (http://udgenome. ags.udel. edu/chickest/chick.htm) has been created to provide access to the data, and a set of unique sequences has been deposited with GenBank (Accession Nos. AI979741-AI982511). Our new Web site (http://www. chickest.udel.edu) will be active as of March 3, 2000, and will also provide keyword-searching capabilities for BLASTX and BLASTN hits of all our clones. PMID:10860659

  11. Songbird - AN Innovative Uas Combining the Advantages of Fixed Wing and Multi Rotor Uas

    NASA Astrophysics Data System (ADS)

    Thamm, F.-P.; Brieger, N.; Neitzke, K.-P.; Meyer, M.; Jansen, R.; Mönninghof, M.

    2015-08-01

    This paper describes a family of innovative fixed wing UAS with can vertical take off and land - the SONGBIRD family. With nominal payloads starting from 0.5 kg they can take off and land safely like a multi-rotor UAV, removing the need for an airstrip for the critical phases of operation. A specially designed flight controller allows stable flight at every point of the transition phase between VTOL and fixed wing mode. Because of this smooth process with a all time stable flight, very expensive payload like hyperspectral sensors or advanced optical cameras can be used. Due to their design all airplanes of the SONGBIRD family have excellent horizontal flight properties, a maximum speed of over 110 km/h, good gliding properties and long flight times of up to 1 h. Missions were flown in wind speeds up to 18 m/s. At every time of the flight it is possible to interrupt the mission and hover over a point of interest for detail investigations. The complete flight, including take-off and landing can be performed by autopilot. Designed for daily use in professional environments, SONGBIRDs are built out of glass-fibre and carbon composites for a long service life. For safe operations comprehensive security features are implemented, for example redundant flight controllers and sensors, advanced power management system and mature fail safe procedures. The aircraft can be dismantled into small parts for transportation. SONGBIRDS are available for different pay loads, from 500 g to 2 kg. The SONGBIRD family are interesting tools combining the advantages of multi-copter and fixed wing UAS.

  12. Air Traffic Controller Performance and Acceptability of Multiple UAS in a Simulated NAS Environment

    NASA Technical Reports Server (NTRS)

    Vu, Kim-Phuong L.; Strybel, Thomas; Chiappe, Dan; Morales, Greg; Battiste, Vernol; Shively, Robert Jay

    2014-01-01

    Previously, we showed that air traffic controllers (ATCos) rated UAS pilot verbal response latencies as acceptable when a 1.5 s delay was added to the UAS pilot responses, but a 5 s delay was rated as mostly unacceptable. In the present study we determined whether a 1.5 s added delay in the UAS pilots' verbal communications would affect ATCos interactions with UAS and other conventional aircraft when the number and speed of the UAS were manipulated. Eight radar-certified ATCos participated in this simulation. The ATCos managed a medium altitude sector containing arrival aircraft, en route aircraft, and one to four UAS. The UAS were conducting a surveillance mission and flew at either a "slow" or "fast" speed. We measured both UAS and conventional pilots' verbal communication latencies, and obtained ATCos' acceptability ratings for these latencies. Although the UAS pilot response latencies were longer than those of conventional pilots, the ATCos rated UAS pilot verbal communication latencies to be as acceptable as those of conventional pilots. Because the overall traffic load within the sector was held constant, ATCos only performed slightly worse when multiple UAS were in their sector compared to when only one UAS was in the sector. Implications of these findings for UAS integration in the NAS are discussed.

  13. Next Generation UAS Based Spectral Systems for Environmental Monitoring

    NASA Technical Reports Server (NTRS)

    Campbell, P.; Townsend, P.; Mandl, D.; Kingdon, C.; Ly, V.; Sohlberg, R.; Corp, L.; Cappelaere, P.; Frye, S.; Handy, M.; Nagol, J.; Ambrosia, V.; Navarro, F.

    2015-01-01

    This presentation provides information on the development of a small Unmanned Aerial System(UAS) with a low power, high performance Intelligent Payload Module (IPM) and a hyperspectral imager to enable intelligent gathering of science grade vegetation data over agricultural fields at about 150 ft. The IPM performs real time data processing over the image data and then enables the navigation system to move the UAS to locations where measurements are optimal for science. This is important because the small UAS typically has about 30 minutes of battery power and therefore over large agricultural fields, resource utilization efficiency is important. The key innovation is the shrinking of the IPM and the cross communication with the navigation software to allow the data processing to interact with desired way points while using Field Programmable Gate Arrays to enable high performance on large data volumes produced by the hyperspectral imager.

  14. Cooperative Autonomous Observation of Volcanic Environments with sUAS

    NASA Astrophysics Data System (ADS)

    Ravela, S.

    2015-12-01

    The Cooperative Autonomous Observing System Project (CAOS) at the MIT Earth Signals and Systems Group has developed methodology and systems for dynamically mapping coherent fluids such as plumes using small unmanned aircraft systems (sUAS). In the CAOS approach, two classes of sUAS, one remote the other in-situ, implement a dynamic data-driven mapping system by closing the loop between Modeling, Estimation, Sampling, Planning and Control (MESPAC). The continually gathered measurements are assimilated to produce maps/analyses which also guide the sUAS network to adaptively resample the environment. Rather than scan the volume in fixed Eulerian or Lagrangian flight plans, the adaptive nature of the sampling process enables objectives for efficiency and resilience to be incorporated. Modeling includes realtime prediction using two types of reduced models, one based on nowcasting remote observations of plume tracer using scale-cascaded alignment, and another based on dynamically-deformable EOF/POD developed for coherent structures. Ensemble-based Information-theoretic machine learning approaches are used for the highly non-linear/non-Gaussian state/parameter estimation, and for planning. Control of the sUAS is based on model reference control coupled with hierarchical PID. MESPAC is implemented in part on a SkyCandy platform, and implements an airborne mesh that provides instantaneous situational awareness and redundant communication to an operating fleet. SkyCandy is deployed on Itzamna Aero's I9X/W UAS with low-cost sensors, and is currently being used to study the Popocatepetl volcano. Results suggest that operational communities can deploy low-cost sUAS to systematically monitor whilst optimizing for efficiency/maximizing resilience. The CAOS methodology is applicable to many other environments where coherent structures are present in the background. More information can be found at caos.mit.edu.

  15. Enabling Earth Science Measurements with NASA UAS Capabilites

    NASA Technical Reports Server (NTRS)

    Albertson, Randal; Schoenung, Susan; Fladeland, Matthew M.; Cutler, Frank; Tagg, Bruce

    2015-01-01

    NASA's Airborne Science Program (ASP) maintains a fleet of manned and unmanned aircraft for Earth Science measurements and observations. The unmanned aircraft systems (UAS) range in size from very large (Global Hawks) to medium (SIERRA, Viking) and relatively small (DragonEye). UAS fly from very low (boundary layer) to very high altitude (stratosphere). NASA also supports science and applied science projects using UAS operated by outside companies or agencies. The aircraft and accompanying data and support systems have been used in numerous investigations. For example, Global Hawks have been used to study both hurricanes and atmospheric composition. SIERRA has been used to study ice, earthquake faults, and coral reefs. DragonEye is being used to measure volcanic emissions. As a foundation for NASA's UAS work, Altair and Ikkana not only flew wildfires in the Western US, but also provided major programs for the development of real-time data download and processing capabilities. In early 2014, an advanced L-band Synthetic Aperture Radar (SAR) also flew for the first time on Global Hawk, proving the utility of UAVSAR, which has been flying successfully on a manned aircraft. In this paper, we focus on two topics: 1) the results of a NASA program called UAS-Enabled Earth Science, in which three different science teams flew (at least) two different UAS to demonstrate platform performance, airspace integration, sensor performance, and applied science results from the data collected; 2) recent accomplishments with the high altitude, long-duration Global Hawks, especially measurements from several payload suites consisting of multiple instruments. The latest upgrades to data processing, communications, tracking and flight planning systems will also be described.

  16. Modeling and Simulation of an UAS Collision Avoidance Systems

    NASA Technical Reports Server (NTRS)

    Oliveros, Edgardo V.; Murray, A. Jennifer

    2010-01-01

    This paper describes a Modeling and Simulation of an Unmanned Aircraft Systems (UAS) Collision Avoidance System, capable of representing different types of scenarios for UAS collision avoidance. Commercial and military piloted aircraft currently utilize various systems for collision avoidance such as Traffic Alert and Collision A voidance System (TCAS), Automatic Dependent Surveillance-Broadcast (ADS-B), Radar and ElectroOptical and Infrared Sensors (EO-IR). The integration of information from these systems is done by the pilot in the aircraft to determine the best course of action. In order to operate optimally in the National Airspace System (NAS) UAS have to work in a similar or equivalent manner to a piloted aircraft by applying the principle of "detect-see and avoid" (DSA) to other air traffic. Hence, we have taken these existing sensor technologies into consideration in order to meet the challenge of researching the modeling and simulation of an approximated DSA system. A Schematic Model for a UAS Collision Avoidance System (CAS) has been developed ina closed loop block diagram for that purpose. We have found that the most suitable software to carry out this task is the Satellite Tool Kit (STK) from Analytical Graphics Inc. (AGI). We have used the Aircraft Mission Modeler (AMM) for modeling and simulation of a scenario where a UAS is placed on a possible collision path with an initial intruder and then with a second intruder, but is able to avoid them by executing a right tum maneuver and then climbing. Radars have also been modeled with specific characteristics for the UAS and both intruders. The software provides analytical, graphical user interfaces and data controlling tools which allow the operator to simulate different conditions. Extensive simulations have been carried out which returned excellent results.

  17. NASA GRC UAS Project - Communications Modeling and Simulation Development Status

    NASA Technical Reports Server (NTRS)

    Apaza, Rafael; Bretmersky, Steven; Dailey, Justin; Satapathy, Goutam; Ditzenberger, David; Ye, Chris; Kubat, Greg; Chevalier, Christine; Nguyen, Thanh

    2014-01-01

    The integration of Unmanned Aircraft Systems (UAS) in the National Airspace represents new operational concepts required in civil aviation. These new concepts are evolving as the nation moves toward the Next Generation Air Transportation System (NextGen) under the leadership of the Joint Planning and Development Office (JPDO), and through ongoing work by the Federal Aviation Administration (FAA). The desire and ability to fly UAS in the National Air Space (NAS) in the near term has increased dramatically, and this multi-agency effort to develop and implement a national plan to successfully address the challenges of UAS access to the NAS in a safe and timely manner is well underway. As part of the effort to integrate UAS in the National Airspace, NASA Glenn Research Center is currently involved with providing research into Communications systems and Communication system operations in order to assist with developing requirements for this implementation. In order to provide data and information regarding communication systems performance that will be necessary, NASA GRC is tasked with developing and executing plans for simulations of candidate future UAS command and control communications, in line with architectures and communications technologies being developed and or proposed by NASA and relevant aviation organizations (in particular, RTCA SC-203). The simulations and related analyses will provide insight into the ability of proposed communications technologies and system architectures to enable safe operation of UAS, meeting UAS in the NAS project goals (including performance requirements, scalability, and interoperability), and ultimately leading to a determination of the ability of NextGen communication systems to accommodate UAS. This presentation, compiled by the NASA GRC Modeling and Simulation team, will provide an update to this ongoing effort at NASA GRC as follow-up to the overview of the planned simulation effort presented at ICNS in 2013. The objective

  18. Influence of time and length size feature selections for human activity sequences recognition.

    PubMed

    Fang, Hongqing; Chen, Long; Srinivasan, Raghavendiran

    2014-01-01

    In this paper, Viterbi algorithm based on a hidden Markov model is applied to recognize activity sequences from observed sensors events. Alternative features selections of time feature values of sensors events and activity length size feature values are tested, respectively, and then the results of activity sequences recognition performances of Viterbi algorithm are evaluated. The results show that the selection of larger time feature values of sensor events and/or smaller activity length size feature values will generate relatively better results on the activity sequences recognition performances. PMID:24075148

  19. Integration of a Generalised Building Model Into the Pose Estimation of Uas Images

    NASA Astrophysics Data System (ADS)

    Unger, J.; Rottensteiner, F.; Heipke, C.

    2016-06-01

    A hybrid bundle adjustment is presented that allows for the integration of a generalised building model into the pose estimation of image sequences. These images are captured by an Unmanned Aerial System (UAS) equipped with a camera flying in between the buildings. The relation between the building model and the images is described by distances between the object coordinates of the tie points and building model planes. Relations are found by a simple 3D distance criterion and are modelled as fictitious observations in a Gauss-Markov adjustment. The coordinates of model vertices are part of the adjustment as directly observed unknowns which allows for changes in the model. Results of first experiments using a synthetic and a real image sequence demonstrate improvements of the image orientation in comparison to an adjustment without the building model, but also reveal limitations of the current state of the method.

  20. The chi-Chi earthquake sequence: active, out-of-sequence thrust faulting in taiwan

    PubMed

    Kao; Chen

    2000-06-30

    We combined precise focal depths and fault plane solutions of more than 40 events from the 20 September 1999 Chi-Chi earthquake sequence with a synthesis of subsurface geology to show that the dominant structure for generating earthquakes in central Taiwan is a moderately dipping (20 degrees to 30 degrees ) thrust fault away from the deformation front. A second, subparallel seismic zone lies about 15 kilometers below the main thrust. These seismic zones differ from previous models, indicating that both the basal decollement and relic normal faults are aseismic. PMID:10875915

  1. GNSS assisted UAS based Monitoring of Ambaroba Landslide, Canakkale, NW Turkey

    NASA Astrophysics Data System (ADS)

    Cuneyt Erenoglu, Ramazan; Akcay, Ozgun; Erenoglu, Oya; Karaca, Zeki

    2015-04-01

    Unmanned Aerial Systems (UAS) recently is becoming more beneficial to solve engineering problems in many applications. For monitoring and analyzing of changes in the topography and surface characteristics of active landslides between different epochs, UAS based remote sensing has been employed for many years. We can easily derive current digital surface models of landslide area using UAV based remote sensing. Finally, the displacement amounts and rates are obtained by the comparison of digital surface models for different two epochs. Moreover, the high accurate three dimensional models present the opportunity to study displacing and sliding materials and fractures of landslide. The aim of this study is to produce the most current three dimensional model using UAV images for Ambaroba Landslide. The landslide is with an average of 21° slope. The Ambaroba Landslide is one of the most active landslides in Canakkale and the current activity was occurred since 2006. To do it, a low-cost monitoring approach based on UAS and calibrated digital cameras are used. This approach clearly provides high-resolution and high-accurate landslide modeling. The concept of manual controlled octo-rotor helicopters is studied for remote sensing applications. For field works, we took significant numbers of aerial photographs of the Ambaroba Landslide (Canakkale, NW Turkey) including RTK-GNSS control points from unmanned aerial vehicle. We combined these photographs to ortho-mosaic using plane image rectification methods. Through this methodology, two different digital surface models of the Ambaroba Landslide are obtained by merging aerial photographs to a digital surface model by using plane rectifications: the entire landslide and the active region. Finally, the entire model covered sliding area of the Ambaroba Landslide is successfully generated with a resolution in level of cm. According to the results, the density of point of our model changes from 0 to 75 points per m2. The density

  2. UAS in the NAS Flight Test Series 3 Overview

    NASA Technical Reports Server (NTRS)

    Murphy, James R.

    2015-01-01

    The UAS Integration in the NAS Project is conducting a series of flight tests to acheive the following objectives: 1.) Validate results previously collected during project simulations with live data 2.) Evaluate TCAS IISS interoperability 3.) Test fully integrated system in a relevant live test environment 4.) Inform final DAA and C2 MOPS 5.) Reduce risk for Flight Test Series 4.

  3. SAGA is an essential in vivo target of the yeast acidic activator Gal4p

    PubMed Central

    Bhaumik, Sukesh R.; Green, Michael R.

    2001-01-01

    Despite major advances in characterizing the eukaryotic transcriptional machinery, the function of promoter-specific transcriptional activators (activators) is still not understood. For example, in no case have the direct in vivo targets of a transcriptional activator been unambiguously identified, nor has it been resolved whether activators have a single essential target or multiple redundant targets. Here we address these issues for the prototype acidic activator yeast Gal4p. Gal4p binds to the upstream activating sequence (UAS) of GAL1 and several other GAL genes and stimulates transcription in the presence of galactose. Previous studies have shown that GAL1 transcription is dependent on the yeast SAGA (Spt/Ada/GCN5/acetyltransferase) complex. Using formaldehyde-based in vivo cross-linking, we show that the Gal4p activation domain recruits SAGA to the GAL1 UAS. If SAGA is not recruited to the UAS, the preinitiation complex (PIC) fails to assemble at the GAL1 core promoter, and transcription does not occur. SAGA, but not other transcription components, is also recruited by the Gal4p activation domain to a plasmid containing minimal Gal4p-binding sites. Recruitment of SAGA by Gal4p and stimulation of PIC assembly is dependent on several SAGA subunits but not the SAGA histone acetyl-transferase (HAT) GCN5. Based on these and other results, we conclude that SAGA is an essential target of Gal4p that, following recruitment to the UAS, facilitates PIC assembly and transcription. PMID:11485988

  4. Monitoring Coastal Processes at Local and Regional Geographic Scales with UAS

    NASA Astrophysics Data System (ADS)

    Starek, M. J.; Bridges, D.; Prouty, D.; Berryhill, J.; Williams, D.; Jeffress, G.

    2014-12-01

    Unmanned Aerial Systems (UAS) provide a powerful tool for coastal mapping due to attractive features such as low cost data acquisition, flexibility in data capture and resolution, rapid response, and autonomous flight. We investigate two different scales of UAS platforms for monitoring coastal processes along the central Texas Gulf coast. Firstly, the eBee is a small-scale UAS weighing ~0.7 kg designed for localized mapping. The imaging payload consists of a hand held RGB digital camera and NIR digital camera, both with 16.1 megapixel resolutions. The system can map up to 10 square kilometers on a single flight and is capable of acquiring imagery down to 1.5 cm ground sample distance. The eBee is configured with a GPS receiver, altitude sensor, gyroscope and a radio transmitter enabling autonomous flight. The system has a certificate of authorization (COA) from the FAA to fly over the Ward Island campus of Texas A&M University-Corpus Christi (TAMUCC). The campus has an engineered beach, called University Beach, located along Corpus Christi Bay. A set of groins and detached breakwaters were built in an effort to protect the beach from erosive wave action. The eBee is being applied to periodically survey the beach (Figure 1A). Through Structure from Motion (SfM) techniques, eBee-derived image sequences are post-processed to extract 3D topography and measure volumetric change. Additionally, when water clarity suffices, this approach enables the extraction of shallow-water bathymetry. Results on the utilization of the eBee to monitor beach morphodynamics will be presented including a comparison of derived estimates to RTK GPS and airborne lidar. Secondly, the RS-16 UAS has a 4 m wingspan and 11 kg sensor payload. The system is remotely piloted and has a flight endurance of 12 to 16 hours making it suitable for regional scale coastal mapping. The imaging payload consists of a multispectral sensor suite measuring in the visible, thermal IR, and ultraviolet ranges of the

  5. An intuitive graphical user interface for small UAS

    NASA Astrophysics Data System (ADS)

    Stroumtsos, Nicholas; Gilbreath, Gary; Przybylski, Scott

    2013-05-01

    Thousands of small UAVs are in active use by the US military and are generally operated by trained but not necessarily skilled personnel. The user interfaces for these devices often seem to be more engineering-focused than usability-focused, which can lead to operator frustration, poor mission effectiveness, reduced situational awareness, and sometimes loss of the vehicle. In addition, coordinated control of both air and ground vehicles is a frequently desired objective, usually with the intent of increasing situational awareness for the ground vehicle. The Space and Naval Warfare Systems Center Pacific (SSCPAC) is working under a Naval Innovative Science and Engineering project to address these topics. The UAS currently targeted are the Raven/Puma/Wasp family of air vehicles as they are small, all share the same communications protocol, and are in wide-spread use. The stock ground control station (GCS) consists of a hand control unit, radio, interconnect hub, and laptop. The system has been simplified to an X-box controller, radio and a laptop, resulting in a smaller hardware footprint, but most importantly the number of personnel required to operate the system has been reduced from two to one. The stock displays, including video with text overlay on one and FalconView on the other, are replaced with a single, graphics-based, integrated user interface, providing the user with much improved situational awareness. The SSCPAC government-developed GCS (the Multi-robot Operator Control Unit) already has the ability to control ground robots and this is leveraged to realize simultaneous multi-vehicle operations including autonomous UAV over-watch for enhanced UGV situational awareness.

  6. Dynamic reorganization of neural activity in motor cortex during new sequence production.

    PubMed

    Lu, Xiaofeng; Ashe, James

    2015-09-01

    Although previous studies have shown that primary motor cortex (M1) neurons are modulated during the performance of a sequence of movements, it is not known how this neural activity in the M1 reorganizes during new learning of sequence-dependent motor skills. Here we trained monkeys to move to each of four spatial targets to produce multiple distinct sequences of movements in which the spatial organization of the targets determined uniquely the serial order of the movements. After the monkeys memorized the sequences, we changed one element of these over-practised sequences and the subjects were required to learn the new sequence through trial and error. When one element in an over-learned four-element sequence was changed, the sequence-specific neural activity was totally disrupted, but relatively minor changes in the direction-specific activity were observed. The data suggest that sequential motor skills are represented within M1 in the context of the complete sequential behavior rather than as a series of single consecutive movements; and sequence-specific neurons in the M1 are involved in new learning of sequence by using memorized knowledge to acquire complex motor skill efficiently. PMID:26202600

  7. Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project, UAS Control and Non-Payload Communication System Phase-1 Flight Test Results

    NASA Technical Reports Server (NTRS)

    Griner, James H.

    2014-01-01

    NASA's UAS Integration in the NAS project, has partnered with Rockwell Collins to develop a concept Control and Non-Payload Communication (CNPC) system prototype radio, operating on recently allocated UAS frequency spectrum bands. This prototype radio is being used to validate initial proposed performance requirements for UAS control communications. This presentation will give an overview of the current status of the prototype radio development, and results from phase 1 flight tests conducted during 2013.

  8. Upstream activation sequence-dependent alteration of chromatin structure and transcription activation of the yeast GAL1-GAL10 genes.

    PubMed Central

    Fedor, M J; Kornberg, R D

    1989-01-01

    Conversion of the positioned nucleosome array characteristic of the repressed GAL1-GAL10 promoter region to the more accessible conformation of the induced state was found to depend on the upstream activation sequence, GAL4 protein, a positive regulator of transcription, and galactose, the inducing agent. The effect of the GAL4 protein-upstream activation sequence complex on the structure of adjacent chromatin required no other promoter sequences. Although sequences protected by histones in the repressed state became more accessible to micrococcal nuclease and (methidiumpropyl-EDTA)iron(II) cleavage following induction of transcription, DNA-protein particles containing these sequences retained the electrophoretic mobility of nucleosomes, indicating that the promoter region can be associated with nucleosomes under conditions of transcription activation. Images PMID:2657404

  9. Carbohydrate-active enzymes: sequences, shapes, contortions and cells.

    PubMed

    Davies, Gideon J; Williams, Spencer J

    2016-02-01

    The enzyme-catalysed degradation of oligo and polysaccharides is of considerable interest in many fields ranging from the fundamental-understanding the intrinsic chemical beauty-through to the applied, including diverse practical applications in medicine and biotechnology. Carbohydrates are the most stereochemically-complex biopolymer, and myriad different natural polysaccharides have led to evolution of multifaceted enzyme consortia for their degradation. The glycosidic bonds that link sugar monomers are among the most chemically-stable, yet enzymatically-labile, bonds in the biosphere. That glycoside hydrolases can achieve a rate enhancement (kcat/kuncat) >10(17)-fold provides testament to their remarkable proficiency and the sophistication of their catalysis reaction mechanisms. The last two decades have seen significant advances in the discovery of new glycosidase sequences, sequence-based classification into families and clans, 3D structures and reaction mechanisms, providing new insights into enzymatic catalysis. New impetus to these studies has been provided by the challenges inherent in plant and microbial polysaccharide degradation, both in the context of environmentally-sustainable routes to foods and biofuels, and increasingly in human nutrition. Study of the reaction mechanism of glycoside hydrolases has also inspired the development of enzyme inhibitors, both as mechanistic probes and increasingly as therapeutic agents. We are on the cusp of a new era where we are learning how to dovetail powerful computational techniques with structural and kinetic data to provide an unprecedented view of conformational details of enzyme action. PMID:26862192

  10. Antibacterial Activity of DNA-Stabilized Silver Nanoclusters Tuned by Oligonucleotide Sequence.

    PubMed

    Javani, Siamak; Lorca, Romina; Latorre, Alfonso; Flors, Cristina; Cortajarena, Aitziber L; Somoza, Álvaro

    2016-04-27

    Silver nanoclusters (AgNCs) stabilized by DNA are promising materials with tunable fluorescent properties, which have been employed in a plethora of sensing systems. In this report, we explore their antimicrobial properties in Gram-positive and Gram-negative bacteria. After testing 9 oligonucleotides with different sequence and length, we found that the antibacterial activity depends on the sequence of the oligonucleotide employed. The sequences tested yielded fluorescent AgNCs, which can be grouped in blue, yellow, and red emitters. Interestingly, blue emitters yielded poor antibacterial activity, whereas yellow and red emitters afforded an activity similar to silver nitrate. Furthermore, structural studies using circular dichroism indicate the formation of complexes with different stability and structure, which might be one of the factors that modulate their activity. Finally, we prepared a trimeric structure containing the sequence that afforded the best antimicrobial activity, which inhibited the growth of Gram-positive and negative bacteria in the submicromolar range. PMID:27058628

  11. A Summary of Two Recent UAS Command and Control (C2) Communications Feasibility Studies

    NASA Technical Reports Server (NTRS)

    Ponchak, Denise S.; Auld, Elisabeth; Church, Gary; Henriksen, Stephen

    2016-01-01

    In Spring of 2015, the NextGen Institute conducted two UAS C2 Communications Feasibility Studies on behalf of the FAA UAS Integration Office to develop two limited UAS C2 operational examples, each involving low-altitude BLOS (Beyond Line of Sight) Line of Communication (LOC) UAS applications, as part of assessing the myriad practical UAS C2 deployment challenges associated with these approaches. The studies investigated the feasibility of "Point-to-Point" (PTP) and "Network" approaches to UAS C2 to better understand potential user needs and to explore evolutionary paths to establishing a nation-wide system for delivering UAS C2 communications. This paper will summarize the solicitation, approach and results of the two studies teams led by Aviation Management Associates, Inc. and Exelis Inc.

  12. Mapping of riparian invasive species with supervised classification of Unmanned Aerial System (UAS) imagery

    NASA Astrophysics Data System (ADS)

    Michez, Adrien; Piégay, Hervé; Jonathan, Lisein; Claessens, Hugues; Lejeune, Philippe

    2016-02-01

    Riparian zones are key landscape features, representing the interface between terrestrial and aquatic ecosystems. Although they have been influenced by human activities for centuries, their degradation has increased during the 20th century. Concomitant with (or as consequences of) these disturbances, the invasion of exotic species has increased throughout the world's riparian zones. In our study, we propose a easily reproducible methodological framework to map three riparian invasive taxa using Unmanned Aerial Systems (UAS) imagery: Impatiens glandulifera Royle, Heracleum mantegazzianum Sommier and Levier, and Japanese knotweed (Fallopia sachalinensis (F. Schmidt Petrop.), Fallopia japonica (Houtt.) and hybrids). Based on visible and near-infrared UAS orthophoto, we derived simple spectral and texture image metrics computed at various scales of image segmentation (10, 30, 45, 60 using eCognition software). Supervised classification based on the random forests algorithm was used to identify the most relevant variable (or combination of variables) derived from UAS imagery for mapping riparian invasive plant species. The models were built using 20% of the dataset, the rest of the dataset being used as a test set (80%). Except for H. mantegazzianum, the best results in terms of global accuracy were achieved with the finest scale of analysis (segmentation scale parameter = 10). The best values of overall accuracies reached 72%, 68%, and 97% for I. glandulifera, Japanese knotweed, and H. mantegazzianum respectively. In terms of selected metrics, simple spectral metrics (layer mean/camera brightness) were the most used. Our results also confirm the added value of texture metrics (GLCM derivatives) for mapping riparian invasive species. The results obtained for I. glandulifera and Japanese knotweed do not reach sufficient accuracies for operational applications. However, the results achieved for H. mantegazzianum are encouraging. The high accuracies values combined to

  13. Regulation of the gut-specific carboxypeptidase: a study using the binary Gal4/UAS system in the mosquito Aedes aegypti.

    PubMed

    Zhao, Bo; Kokoza, Vladimir A; Saha, Tusar T; Wang, Stephanie; Roy, Sourav; Raikhel, Alexander S

    2014-11-01

    Pathogen transmission by mosquitoes is tightly linked to blood feeding which, in turn, is required for egg development. Studies of these processes would greatly benefit from genetic methods, such as the binary Gal4/UAS system. The latter has been well established for model organisms, but its availability is limited for mosquitoes. The objective of this study was to develop the blood-meal-activated, gut-specific Gal4/UAS system for the yellow-fever mosquito Aedes aegypti and utilize it to investigate the regulation of gut-specific gene expression. A 1.1-kb, 5(') upstream region of the carboxypeptidase A (CP) gene was used to genetically engineer the CP-Gal4 driver mosquito line. The CP-Gal4 specifically activated the Enhanced Green Fluorescent Protein (EGFP) reporter only after blood feeding in the gut of the CP-Gal4 > UAS-EGFP female Ae. aegypti. We used this system to study the regulation of CP gene expression. In vitro treatments with either amino acids (AAs) or insulin stimulated expression of the CP-Gal4 > UAS-EGFP transgene; no effect was observed with 20-hydroxyecdysone (20E) treatments. The transgene activation by AAs and insulin was blocked by rapamycin, the inhibitor of the Target-of-Rapamycin (TOR) kinase. RNA interference (RNAi) silence of the insulin receptor (IR) reduced the expression of the CP-Gal4 > UAS-EGFP transgene. Thus, in vitro and in vivo experiments have revealed that insulin and TOR pathways control expression of the digestive enzyme CP. In contrast, 20E, the major regulator of post-blood-meal vitellogenic events in female mosquitoes, has no role in regulating the expression of this gene. This novel CP-Gal4/UAS system permits functional testing of midgut-specific genes that are involved in blood digestion and interaction with pathogens in Ae. aegypti mosquitoes. PMID:25152428

  14. sUAS and their application in observing geomorphological processes

    NASA Astrophysics Data System (ADS)

    Gallik, Jozef; Bolešová, Lenka

    2016-07-01

    Methodologies and procedures in processing gained data vary based on possibilities and needs of scientific projects. This paper should help to get a general overview in the choice of small unmanned aircraft systems (sUAS - commonly known as drones) for scientific purposes, namely remote sensing of geomorphologic processes such as soil degradation in high mountainous areas that are hard to access and have unfavourable weather conditions. All high mountain areas in European countries are legislatively protected, and so various permissions and observation of strict procedures are needed in order to not have a negative influence on the environment. Nowadays, several types of UAS exist that could effectively help us in such protection, as well as in full-fledged utilization when answering scientific questions about the alpine lake genesis. We demonstrate it here with selected examples of our photo documentation.

  15. Sequence Dance for Lifelong Leisure Activity: An International Experience!

    ERIC Educational Resources Information Center

    Bennett, John P.

    This paper provides the outline of a session in dance at the annual meeting of the American Alliance for Health, Physical Education, Recreation, and Dance. The purpose of the session was to provide an opportunity to celebrate individual differences while learning new skills for lifelong leisure activity through an English dance form known as…

  16. Virtualizing Super-Computation On-Board Uas

    NASA Astrophysics Data System (ADS)

    Salami, E.; Soler, J. A.; Cuadrado, R.; Barrado, C.; Pastor, E.

    2015-04-01

    Unmanned aerial systems (UAS, also known as UAV, RPAS or drones) have a great potential to support a wide variety of aerial remote sensing applications. Most UAS work by acquiring data using on-board sensors for later post-processing. Some require the data gathered to be downlinked to the ground in real-time. However, depending on the volume of data and the cost of the communications, this later option is not sustainable in the long term. This paper develops the concept of virtualizing super-computation on-board UAS, as a method to ease the operation by facilitating the downlink of high-level information products instead of raw data. Exploiting recent developments in miniaturized multi-core devices is the way to speed-up on-board computation. This hardware shall satisfy size, power and weight constraints. Several technologies are appearing with promising results for high performance computing on unmanned platforms, such as the 36 cores of the TILE-Gx36 by Tilera (now EZchip) or the 64 cores of the Epiphany-IV by Adapteva. The strategy for virtualizing super-computation on-board includes the benchmarking for hardware selection, the software architecture and the communications aware design. A parallelization strategy is given for the 36-core TILE-Gx36 for a UAS in a fire mission or in similar target-detection applications. The results are obtained for payload image processing algorithms and determine in real-time the data snapshot to gather and transfer to ground according to the needs of the mission, the processing time, and consumed watts.

  17. Some Impacts of Risk-Centric Certification Requirements for UAS

    NASA Technical Reports Server (NTRS)

    Neogi, Natasha A. (Inventor); Hayhurst, Kelly J.; Maddalon, Jeffrey M.; Verstynen, Harry A.

    2016-01-01

    This paper discusses results from a recent study that investigates certification requirements for an unmanned rotorcraft performing agricultural application operations. The process of determining appropriate requirements using a risk-centric approach revealed a number of challenges that could impact larger UAS standardization efforts. Fundamental challenges include selecting the correct level of abstraction for requirements to permit design flexibility, transforming human-centric operational requirements to aircraft airworthiness requirements, and assessing all hazards associated with the operation.

  18. Evaluation of DEM generation accuracy from UAS imagery

    NASA Astrophysics Data System (ADS)

    Santise, M.; Fornari, M.; Forlani, G.; Roncella, R.

    2014-06-01

    The growing use of UAS platform for aerial photogrammetry comes with a new family of Computer Vision highly automated processing software expressly built to manage the peculiar characteristics of these blocks of images. It is of interest to photogrammetrist and professionals, therefore, to find out whether the image orientation and DSM generation methods implemented in such software are reliable and the DSMs and orthophotos are accurate. On a more general basis, it is interesting to figure out whether it is still worth applying the standard rules of aerial photogrammetry to the case of drones, achieving the same inner strength and the same accuracies as well. With such goals in mind, a test area has been set up at the University Campus in Parma. A large number of ground points has been measured on natural as well as signalized points, to provide a comprehensive test field, to check the accuracy performance of different UAS systems. In the test area, points both at ground-level and features on the buildings roofs were measured, in order to obtain a distributed support also altimetrically. Control points were set on different types of surfaces (buildings, asphalt, target, fields of grass and bumps); break lines, were also employed. The paper presents the results of a comparison between two different surveys for DEM (Digital Elevation Model) generation, performed at 70 m and 140 m flying height, using a Falcon 8 UAS.

  19. Assuring Ground-Based Detect and Avoid for UAS Operations

    NASA Technical Reports Server (NTRS)

    Denney, Ewen W.; Pai, Ganeshmadhav Jagadeesh; Berthold, Randall; Fladeland, Matthew; Storms, Bruce; Sumich, Mark

    2014-01-01

    One of the goals of the Marginal Ice Zones Observations and Processes Experiment (MIZOPEX) NASA Earth science mission was to show the operational capabilities of Unmanned Aircraft Systems (UAS) when deployed on challenging missions, in difficult environments. Given the extreme conditions of the Arctic environment where MIZOPEX measurements were required, the mission opted to use a radar to provide a ground-based detect-and-avoid (GBDAA) capability as an alternate means of compliance (AMOC) with the see-and-avoid federal aviation regulation. This paper describes how GBDAA safety assurance was provided by interpreting and applying the guidelines in the national policy for UAS operational approval. In particular, we describe how we formulated the appropriate safety goals, defined the processes and procedures for system safety, identified and assembled the relevant safety verification evidence, and created an operational safety case in compliance with Federal Aviation Administration (FAA) requirements. To the best of our knowledge, the safety case, which was ultimately approved by the FAA, is the first successful example of non-military UAS operations using GBDAA in the U.S. National Airspace System (NAS), and, therefore, the first nonmilitary application of the safety case concept in this context.

  20. Concepts of Integration for UAS Operations in the NAS

    NASA Technical Reports Server (NTRS)

    Consiglio, Maria C.; Chamberlain, James P.; Munoz, Cesar A.; Hoffler, Keith D.

    2012-01-01

    One of the major challenges facing the integration of Unmanned Aircraft Systems (UAS) in the National Airspace System (NAS) is the lack of an onboard pilot that can comply with the legal requirement identified in the US Code of Federal Regulations (CFR) that pilots see and avoid other aircraft. UAS will be expected to demonstrate the means to perform the function of see and avoid while preserving the safety level of the airspace and the efficiency of the air traffic system. This paper introduces a Sense and Avoid (SAA) concept for integration of UAS into the NAS that is currently being developed by the National Aeronautics and Space Administration (NASA) and identifies areas that require additional experimental evaluation to further inform various elements of the concept. The concept design rests on interoperability principles that take into account both the Air Traffic Control (ATC) environment as well as existing systems such as the Traffic Alert and Collision Avoidance System (TCAS). Specifically, the concept addresses the determination of well clear values that are large enough to avoid issuance of TCAS corrective Resolution Advisories, undue concern by pilots of proximate aircraft and issuance of controller traffic alerts. The concept also addresses appropriate declaration times for projected losses of well clear conditions and maneuvers to regain well clear separation.

  1. Analysis of Point Cloud Generation from UAS Images

    NASA Astrophysics Data System (ADS)

    Ostrowski, S.; Jóźków, G.; Toth, C.; Vander Jagt, B.

    2014-11-01

    Unmanned Aerial Systems (UAS) allow for the collection of low altitude aerial images, along with other geospatial information from a variety of companion sensors. The images can then be processed using sophisticated algorithms from the Computer Vision (CV) field, guided by the traditional and established procedures from photogrammetry. Based on highly overlapped images, new software packages which were specifically developed for UAS technology can easily create ground models, such as Point Clouds (PC), Digital Surface Model (DSM), orthoimages, etc. The goal of this study is to compare the performance of three different software packages, focusing on the accuracy of the 3D products they produce. Using a Nikon D800 camera installed on an ocotocopter UAS platform, images were collected during subsequent field tests conducted over the Olentangy River, north from the Ohio State University campus. Two areas around bike bridges on the Olentangy River Trail were selected because of the challenge the packages would have in creating accurate products; matching pixels over the river and dense canopy on the shore presents difficult scenarios to model. Ground Control Points (GCP) were gathered at each site to tie the models to a local coordinate system and help assess the absolute accuracy for each package. In addition, the models were also relatively compared to each other using their PCs.

  2. Dynamic replanning on demand of UAS constellations performing ISR missions

    NASA Astrophysics Data System (ADS)

    Stouch, Daniel W.; Zeidman, Ernest; Callahan, William; McGraw, Kirk

    2011-05-01

    Unmanned aerial systems (UAS) have proven themselves to be indispensable in providing intelligence, surveillance, and reconnaissance (ISR) over the battlefield. Constellations of heterogeneous, multi-purpose UAS are being tasked to provide ISR in an unpredictable environment. This necessitates the dynamic replanning of critical missions as weather conditions change, new observation targets are identified, aircraft are lost or equipment malfunctions, and new airspace restrictions are introduced. We present a method to generate coordinated mission plans for constellations of UAS with multiple flight goals and potentially competing objectives, and update them on demand as the operational situation changes. We use a fast evolutionary algorithm-based, multi-objective optimization technique. The updated flight routes maintain continuity by considering where the ISR assets have already flown and where they still need to go. Both the initial planning and replanning take into account factors such as area of analysis coverage, restricted operating zones, maximum control station range, adverse weather effects, military terrain value, and sensor performance. Our results demonstrate that by constraining the space of potential solutions using an intelligently-formed air maneuver network with a subset of potential airspace corridors and navigational waypoints, we can ensure global optimization for multiple objectives considering the situation both before and after the replanning is initiated. We employ sophisticated visualization techniques using a geographic information system to help the user 'look under the hood" of the algorithms to understand the effectiveness and viability of the generated ISR mission plans and identify potential gaps in coverage.

  3. Sequences of cortical activation for tactile pattern discrimination using magnetoencephalography.

    PubMed

    Reed, Catherine L; Hagler, Donald J; Marinkovic, Ksenija; Dale, Anders; Halgren, Eric

    2009-07-01

    To observe sequential stages in tactile pattern discrimination and their modification with and without attention, we used whole-head anatomically constrained magnetoencephalography to spatiotemporally map brain responses. Eight, normal, right-handed participants discriminated between two patterns presented on the palm. Latencies of neural activity were determined from stimulus contact with the palm. Early cortical activation moved from sensorimotor cortex (SM1) to secondary somatosensory cortex (SII), Broca's area (BA), and superior parietal cortex by 65 ms. It continued bilaterally to temporal and frontal poles by 290 ms. Subtraction of nonattended from attended conditions removed primarily the early contralateral sensory components. There was some indication of a preferred order of sensory processing that may express and optimize hemispheric computational specializations. Results indicate similar functional organizations for tactile and visual pattern recognition. PMID:19525880

  4. UAS Integration Into the NAS: An Examination of Baseline Compliance in the Current Airspace System

    NASA Technical Reports Server (NTRS)

    Fern, Lisa; Kenny, Caitlin A.; Shively, Robert J.; Johnson, Walter

    2012-01-01

    As a result of the FAA Modernization and Reform Act of 2012, Unmanned Aerial Systems (UAS) are expected to be integrated into the National Airspace System (NAS) by 2015. Several human factors challenges need to be addressed before UAS can safely and routinely fly in the NAS with manned aircraft. Perhaps the most significant challenge is for the UAS to be non-disruptive to the air traffic management system. Another human factors challenge is how to provide UAS pilots with intuitive traffic information in order to support situation awareness (SA) of their airspace environment as well as a see-and-avoid capability comparable to manned aircraft so that a UAS pilot could safely maneuver the aircraft to maintain separation and collision avoidance if necessary. A simulation experiment was conducted to examine baseline compliance of UAS operations in the current airspace system. Researchers also examined the effects of introducing a Cockpit Situation Display (CSD) into a UAS Ground Control Station (GCS) on UAS pilot performance, workload and situation awareness while flying in a positively controlled sector. Pilots were tasked with conducting a highway patrol police mission with a Medium Altitude Long Endurance (MALE) UAS in L.A. Center airspace with two mission objectives: 1) to reroute the UAS when issued new instructions from their commander, and 2) to communicate with Air Traffic Control (ATC) to negotiate flight plan changes and respond to vectoring and altitude change instructions. Objective aircraft separation data, workload ratings, SA data, and subjective ratings regarding UAS operations in the NAS were collected. Results indicate that UAS pilots were able to comply appropriately with ATC instructions. In addition, the introduction of the CSD improved pilot SA and reduced workload associated with UAS and ATC interactions.

  5. Magnetic nanoparticle imaging by random and maximum length sequences of inhomogeneous activation fields.

    PubMed

    Baumgarten, Daniel; Eichardt, Roland; Crevecoeur, Guillaume; Supriyanto, Eko; Haueisen, Jens

    2013-01-01

    Biomedical applications of magnetic nanoparticles require a precise knowledge of their biodistribution. From multi-channel magnetorelaxometry measurements, this distribution can be determined by means of inverse methods. It was recently shown that the combination of sequential inhomogeneous excitation fields in these measurements is favorable regarding the reconstruction accuracy when compared to homogeneous activation . In this paper, approaches for the determination of activation sequences for these measurements are investigated. Therefor, consecutive activation of single coils, random activation patterns and families of m-sequences are examined in computer simulations involving a sample measurement setup and compared with respect to the relative condition number of the system matrix. We obtain that the values of this condition number decrease with larger number of measurement samples for all approaches. Random sequences and m-sequences reveal similar results with a significant reduction of the required number of samples. We conclude that the application of pseudo-random sequences for sequential activation in the magnetorelaxometry imaging of magnetic nanoparticles considerably reduces the number of required sequences while preserving the relevant measurement information. PMID:24110423

  6. Synthetic muscle promoters: activities exceeding naturally occurring regulatory sequences

    NASA Technical Reports Server (NTRS)

    Li, X.; Eastman, E. M.; Schwartz, R. J.; Draghia-Akli, R.

    1999-01-01

    Relatively low levels of expression from naturally occurring promoters have limited the use of muscle as a gene therapy target. Myogenic restricted gene promoters display complex organization usually involving combinations of several myogenic regulatory elements. By random assembly of E-box, MEF-2, TEF-1, and SRE sites into synthetic promoter recombinant libraries, and screening of hundreds of individual clones for transcriptional activity in vitro and in vivo, several artificial promoters were isolated whose transcriptional potencies greatly exceed those of natural myogenic and viral gene promoters.

  7. Spatial Segmentation of Image Sequences Based on Their Time Activity

    NASA Astrophysics Data System (ADS)

    Galatsanos, N. P.

    2006-04-01

    There are many applications in medical imaging where one is interested in finding the areas of the image that exhibit the same time activity. Such applications occur in positron and single photon emission imaging as well as in perfusion studies with magnetic resonance imaging (MRI). In this talk we will present Bayesian methodology based on clustering to solve this problem. At first the dimensionality of the pixel observations is reduced using a probabilistic principle component model along the spatial dimension of the data. Then, a multidimensional Gaussian mixture model with spatial constraints is used for clustering. Examples from MRI perfusion studies of the heart and the brain will be shown.

  8. An insulin with the native sequence but virtually no activity.

    PubMed

    Wollmer, A; Gilge, G; Brandenburg, D; Gattner, H G

    1994-03-01

    The B24-B25 peptide bond of insulin was replaced by an ester bond. To our knowledge this is the first replacement of a main chain atom reported for the hormone. It is meant to eliminate a structurally important H-bond between the imino group of B25 and the carbonyl oxygen of A19, and consequently to enhance detachment of the C-terminal B chain from the underlying A chain. On the basis of independent experimental evidence this very conformational change is believed to be a prerequisite for receptor binding. It was thus anticipated that increased flexibility would increase receptor binding and activity. Intriguingly, porcine [B24-B25 CO-O]insulin (depsi-insulin) and likewise [B24-B25 CO-O]des-(B26-B30)insulin-B25-amide (depsi-DPI-amide) were found to be only 3-4% potent. PMID:8011179

  9. Synthetic promoter elements obtained by nucleotide sequence variation and selection for activity

    PubMed Central

    Edelman, Gerald M.; Meech, Robyn; Owens, Geoffrey C.; Jones, Frederick S.

    2000-01-01

    Eukaryotic transcriptional regulation in different cells involves large numbers and arrangements of cis and trans elements. To survey the number of cis regulatory elements that are active in different contexts, we have devised a high-throughput selection procedure permitting synthesis of active cis motifs that enhance the activity of a minimal promoter. This synthetic promoter construction method (SPCM) was used to identify >100 DNA sequences that showed increased promoter activity in the neuroblastoma cell line Neuro2A. After determining DNA sequences of selected synthetic promoters, database searches for known elements revealed a predominance of eight motifs: AP2, CEBP, GRE, Ebox, ETS, CREB, AP1, and SP1/MAZ. The most active of the selected synthetic promoters contain composites of a number of these motifs. Assays of DNA binding and promoter activity of three exemplary motifs (ETS, CREB, and SP1/MAZ) were used to prove the effectiveness of SPCM in uncovering active sequences. Up to 10% of 133 selected active sequences had no match in currently available databases, raising the possibility that new motifs and transcriptional regulatory proteins to which they bind may be revealed by SPCM. The method may find uses in constructing databases of active cis motifs, in diagnostics, and in gene therapy. PMID:10725347

  10. Direct detection of optogenetically evoked oscillatory neuronal electrical activity in rats using SLOE sequence.

    PubMed

    Chai, Yuhui; Bi, Guoqiang; Wang, Liping; Xu, Fuqiang; Wu, Ruiqi; Zhou, Xin; Qiu, Bensheng; Lei, Hao; Zhang, Yaoyu; Gao, Jia-Hong

    2016-01-15

    The direct detection of neuronal electrical activity is one of the most challenging goals in non-BOLD fMRI research. Previous work has demonstrated its feasibility in phantom and cell culture studies, but attempts in in vivo studies remain few and far between. Most recent in vivo studies used T2*-weighted sequences to directly detect neuronal electrical activity evoked by sensory stimulus. As neuronal electrical signal is usually comprised of a series of spectrally distributed oscillatory waveforms rather than being a direct current, it is most likely to be detected using oscillatory current sensitive sequences. In this study, we explored the potential of using the spin-lock oscillatory excitation (SLOE) sequence with spiral readout to directly detect optogenetically evoked oscillatory neuronal electrical activity, whose main spectral component can be manipulated artificially to match the resonance frequency of spin-lock RF field. In addition, experiments using the stimulus-induced rotary saturation (SIRS) sequence with spiral readout were also performed. Electrophysiological recording and MRI data acquisition were conducted on separate animals. Robust optogenetically evoked oscillatory LFP signals were observed and significant BOLD signals were acquired with the GE-EPI sequence before and after the whole SLOE and SIRS acquisitions, but no significant neuronal current MRI (ncMRI) signal changes were detected. These results indicate that the sensitivity of oscillatory current sensitive sequences needs to be further improved for direct detection of neuronal electrical activity. PMID:26518631

  11. Identification of a DNA methylation-dependent activator sequence in the pseudoxanthoma elasticum gene, ABCC6.

    PubMed

    Arányi, Tamás; Ratajewski, Marcin; Bardóczy, Viola; Pulaski, Lukasz; Bors, András; Tordai, Attila; Váradi, András

    2005-05-13

    ABCC6 encodes MRP6, a member of the ABC protein family with an unknown physiological role. The human ABCC6 and its two pseudogenes share 99% identical DNA sequence. Loss-of-function mutations of ABCC6 are associated with the development of pseudoxanthoma elasticum (PXE), a recessive hereditary disorder affecting the elastic tissues. Various disease-causing mutations were found in the coding region; however, the mutation detection rate in the ABCC6 coding region of bona fide PXE patients is only approximately 80%. This suggests that polymorphisms or mutations in the regulatory regions may contribute to the development of the disease. Here, we report the first characterization of the ABCC6 gene promoter. Phylogenetic in silico analysis of the 5' regulatory regions revealed the presence of two evolutionarily conserved sequence elements embedded in CpG islands. The study of DNA methylation of ABCC6 and the pseudogenes identified a correlation between the methylation of the CpG island in the proximal promoter and the ABCC6 expression level in cell lines. Both activator and repressor sequences were uncovered in the proximal promoter by reporter gene assays. The most potent activator sequence was one of the conserved elements protected by DNA methylation on the endogenous gene in non-expressing cells. Finally, in vitro methylation of this sequence inhibits the transcriptional activity of the luciferase promoter constructs. Altogether these results identify a DNA methylation-dependent activator sequence in the ABCC6 promoter. PMID:15760889

  12. Rapid Conversion of Traditional Introductory Physics Sequences to an Activity-Based Format

    ERIC Educational Resources Information Center

    Yoder, Garett; Cook, Jerry

    2014-01-01

    The Department of Physics at EKU [Eastern Kentucky University] with support from the National Science Foundations Course Curriculum and Laboratory Improvement Program has successfully converted our entire introductory physics sequence, both algebra-based and calculus-based courses, to an activity-based format where laboratory activities,…

  13. Student Activity Ideas for the Technology Sequence Systems and Foundation Courses.

    ERIC Educational Resources Information Center

    New York State Education Dept., Albany.

    This publication provides single-page outlines of brief ideas for high school student activities in each of the System and Foundation Courses of the New York State technology sequence. The idea outlines are provided as a resource to assist teachers in the development of student learning activities. The six courses for which ideas are presented are…

  14. Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

    PubMed

    Minogue, T D; Daligault, H E; Davenport, K W; Bishop-Lilly, K A; Bruce, D C; Chain, P S; Coyne, S R; Chertkov, O; Freitas, T; Frey, K G; Jaissle, J; Koroleva, G I; Ladner, J T; Palacios, G F; Redden, C L; Xu, Y; Johnson, S L

    2014-01-01

    The Enterobacteriaceae are environmental and enteric microbes. We sequenced the genomes of two Enterobacter reference strains, E. aerogenes CDC 6003-71 and E. cloacae CDC 442-68, as well as one near neighbor used as an exclusionary reference for diagnostics, Pantoea agglomerans CDC UA0804-01. The genome sizes range from 4.72 to 5.55 Mbp and have G+C contents from 54.6 to 55.1%. PMID:25342683

  15. Unlocking the potential of small unmanned aircraft systems (sUAS) for Earth observation

    NASA Astrophysics Data System (ADS)

    Hugenholtz, C.; Riddell, K.; Barchyn, T. E.

    2012-12-01

    Small unmanned aircraft systems (sUAS, < 25 kg) are emerging as a viable alternative to conventional remote sensing platforms for Earth observation (EO). sUAS technology affords greater control, lower cost, and flexibility for scientists, and provides new opportunities to match the scale of sUAS data to the scale of the geophysical phenomenon under investigation. Although a mechanism is in place to make sUAS available to researchers and other non-military users through the US Federal Aviation Administration's Modernization and Reform Act of 2012 (FAAMRA), there are many regulatory hurdles before they are fully accepted and integrated into the National Airspace System. In this talk we will provide a brief overview of the regulatory landscape for sUAS, both in the USA and in Canada, where sUAS regulations are more flexible. We critically outline potential advantages and disadvantages of sUAS for EO applications under current and potential regulations. We find advantages: relatively low cost, potentially high temporal resolution, rapidly improving technology, and operational flexibility. We also find disadvantages: limited temporal and spatial extent, limited accuracy assessment and methodological development, and an immature regulatory landscape. From a case study we show an example of the accuracy of a photogrammetrically-derived digital terrain map (DTM) from sUAS imagery. We also compare the sUAS DTM to a LiDAR DTM. Our results suggest that sUAS-acquired imagery may provide a low-cost, rapid, and flexible alternative to airborne LiDAR. Overall, we are encouraged about the potential of sUAS for geophysical measurements; however, understanding and compliance with regulations is paramount to ensure that research is conducted legally and responsibly. Because UAS are new outside of military operations, we hope researchers will proceed carefully to ensure this great scientific opportunity remains a long term tool.

  16. Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project

    NASA Technical Reports Server (NTRS)

    Griner, James H.

    2013-01-01

    NASA's UAS Integration in the NAS project, has partnered with Rockwell Collins to develop a concept Control and Non-Payload Communication system prototype radio, operating on recently allocated UAS frequency spectrum bands. The prototype radio will be used to validate initial proposed performance requirements for UAS control communications. This presentation will give an overview of the current status of the design, development, and flight test planning for this prototype radio.

  17. Sequence context effect for hMSH2-hMSH6 mismatch-dependent activation

    PubMed Central

    Mazurek, Anthony; Johnson, Christopher N.; Germann, Markus W.; Fishel, Richard

    2009-01-01

    Numerous DNA mismatches and lesions activate MutS homologue (MSH) ATPase activity that is essential for mismatch repair (MMR). We have found that a mismatch embedded in a nearest-neighbor sequence context containing symmetric 3′-purines (2 × 3′-purines) enhanced, whereas symmetric 3′-pyrimidines (2 × 3′-pyrimidines) reduced, hMSH2-hMSH6 ATPase activation. The 3′-purine/pyrimidine effect was most evident for G-containing mispairs. A similar trend pervaded mismatch binding (KD) and the melting of unbound oligonucleotides (Tm; ΔG). However, these latter measures did not accurately predict the hierarchy of MSH ATPase activation. NMR studies of imino proton lifetime, solvent accessibility, and NOE connectivity suggest that sequence contexts that provoke improved MSH-activation displayed enhanced localized DNA flexibility: a dynamic DNA signature that may account for the wide range of lesions that activate MSH functions. PMID:19237577

  18. Human Factors Guidelines for UAS in the National Airspace System

    NASA Technical Reports Server (NTRS)

    Hobbs, Alan; Shively, R. Jay

    2013-01-01

    The ground control stations (GCS) of some UAS have been characterized by less-than-adequate human-system interfaces. In some cases this may reflect a failure to apply an existing regulation or human factors standard. In other cases, the problem may indicate a lack of suitable guidance material. NASA is leading a community effort to develop recommendations for human factors guidelines for GCS to support routine beyond-line-of-sight UAS operations in the national airspace system (NAS). In contrast to regulations, guidelines are not mandatory requirements. However, by encapsulating solutions to identified problems or areas of risk, guidelines can provide assistance to system developers, users and regulatory agencies. To be effective, guidelines must be relevant to a wide range of systems, must not be overly prescriptive, and must not impose premature standardization on evolving technologies. By assuming that a pilot will be responsible for each UAS operating in the NAS, and that the aircraft will be required to operate in a manner comparable to conventionally piloted aircraft, it is possible to identify a generic set of pilot tasks and the information, control and communication requirements needed to support these tasks. Areas where guidelines will be useful can then be identified, utilizing information from simulations, operational experience and the human factors literature. In developing guidelines, we recognize that existing regulatory and guidance material will, at times, provide adequate coverage of an area. In other cases suitable guidelines may be found in existing military or industry human factors standards. In cases where appropriate existing standards cannot be identified, original guidelines will be proposed.

  19. Contributions of the specialized conduction system to the activation sequence in the canine pulmonary conus.

    PubMed

    Pollard, A E; Spitzer, K W; Burgess, M J

    1997-07-01

    This study was designed to characterize the relative contributions of the specialized conduction system and the myocardial architecture to the ventricular activation sequence. In animal experiments, the activation sequence within a 14 x 14-mm region on each surface of the pulmonary conus from isolated canine hearts was determined from electrograms recorded during ventricular drives applied at the periphery of the measurement region. Recordings were obtained simultaneously from electrode arrays mounted on the endocardium and epicardium. Activation sequences were determined before and after the right ventricular cavity was bathed with a dilute Lugol-normal Tyrode (LNT) solution that selectively inhibited excitation of Purkinje cells. Simulations of action potential propagation in three-dimensional models (14.4 mm long x 7.2 mm wide x 3.6 mm thick) that included the major features of the midwall architecture were performed to aid in the interpretation of the experimental findings. During endocardial pacing (7 animals, 43 total drives), LNT application markedly prolonged the endocardial (13.7 +/- 1.3 ms) and epicardial (5.7 +/- 1.0 ms) activation sequences. However, epicardial isochrone maps constructed with electrograms recorded before LNT application showed no signs of multiple breakthrough sites and, with the exception of overall timing, closely resembled isochrone maps constructed with electrograms recorded after LNT application. During epicardial pacing (9 animals, 55 total drives), LNT application prolonged the endocardial (3.7 +/- 0.6 ms) and epicardial (1.9 +/- 0.6 ms) activation sequences much less dramatically than during endocardial pacing, suggesting a primary contribution of myocardial architecture. However, in those instances where nonuniform anisotropy slowed epicardial expansion of the depolarization wavefront, the specialized conduction system contributed to the activation sequence to a greater extent. PMID:9249520

  20. Assessing Activity Pattern Similarity with Multidimensional Sequence Alignment based on a Multiobjective Optimization Evolutionary Algorithm

    PubMed Central

    Kwan, Mei-Po; Xiao, Ningchuan; Ding, Guoxiang

    2015-01-01

    Due to the complexity and multidimensional characteristics of human activities, assessing the similarity of human activity patterns and classifying individuals with similar patterns remains highly challenging. This paper presents a new and unique methodology for evaluating the similarity among individual activity patterns. It conceptualizes multidimensional sequence alignment (MDSA) as a multiobjective optimization problem, and solves this problem with an evolutionary algorithm. The study utilizes sequence alignment to code multiple facets of human activities into multidimensional sequences, and to treat similarity assessment as a multiobjective optimization problem that aims to minimize the alignment cost for all dimensions simultaneously. A multiobjective optimization evolutionary algorithm (MOEA) is used to generate a diverse set of optimal or near-optimal alignment solutions. Evolutionary operators are specifically designed for this problem, and a local search method also is incorporated to improve the search ability of the algorithm. We demonstrate the effectiveness of our method by comparing it with a popular existing method called ClustalG using a set of 50 sequences. The results indicate that our method outperforms the existing method for most of our selected cases. The multiobjective evolutionary algorithm presented in this paper provides an effective approach for assessing activity pattern similarity, and a foundation for identifying distinctive groups of individuals with similar activity patterns. PMID:26190858

  1. THE 'MAIN SEQUENCE' OF EXPLOSIVE SOLAR ACTIVE REGIONS: DISCOVERY AND INTERPRETATION

    SciTech Connect

    Falconer, David A.; Moore, Ronald L.; Adams, Mitzi; Gary, G. Allen

    2009-08-01

    We examine the location and distribution of the production of coronal mass ejections (CMEs) and major flares by sunspot active regions in the phase space of two whole-active-region magnetic quantities measured from 1897 SOHO/MDI magnetograms. These magnetograms track the evolution of 44 active regions across the central disk of radius 0.5 R {sub Sun}. The two quantities are {sup L}WL{sub SG}, a gauge of the total free energy in an active region's magnetic field, and {sup L}{phi}, a measure of the active region's total magnetic flux. From these data and each active region's history of production of CMEs, X flares, and M flares, we find (1) that CME/flare-productive active regions are concentrated in a straight-line 'main sequence' in (log {sup L}WL{sub SG}, log {sup L}{phi}) space, (2) that main-sequence active regions have nearly their maximum attainable free magnetic energy, and (3) evidence that this arrangement plausibly results from equilibrium between input of free energy to an explosive active region's magnetic field in the chromosphere and corona by contortion of the field via convection in and below the photosphere and loss of free energy via CMEs, flares, and coronal heating, an equilibrium between energy gain and loss that is analogous to that of the main sequence of hydrogen-burning stars in (mass, luminosity) space.

  2. Uas for Archaeology - New Perspectives on Aerial Documentation

    NASA Astrophysics Data System (ADS)

    Fallavollita, P.; Balsi, M.; Esposito, S.; Melis, M. G.; Milanese, M.; Zappino, L.

    2013-08-01

    In this work some Unmanned Aerial Systems applications are discussed and applied to archaeological sites survey and 3D model reconstructions. Interesting results are shown for three important and different aged sites on north Sardinia (Italy). An easy and simplified procedure has proposed permitting the adoption of multi-rotor aircrafts for daily archaeological survey during excavation and documentation, involving state of art in UAS design, flight control systems, high definition sensor cameras and innovative photogrammetric software tools. Very high quality 3D models results are shown and discussed and how they have been simplified the archaeologist work and decisions.

  3. Analysis of DNA structure and sequence requirements for Pseudomonas aeruginosa MutL endonuclease activity.

    PubMed

    Correa, Elisa M E; De Tullio, Luisina; Vélez, Pablo S; Martina, Mariana A; Argaraña, Carlos E; Barra, José L

    2013-12-01

    The hallmark of the mismatch repair system in bacterial and eukaryotic organisms devoid of MutH is the presence of a MutL homologue with endonuclease activity. The aim of this study was to analyse whether different DNA structures affect Pseudomonas aeruginosa MutL (PaMutL) endonuclease activity and to determine if a specific nucleotide sequence is required for this activity. Our results showed that PaMutL was able to nick covalently closed circular plasmids but not linear DNA at high ionic strengths, while the activity on linear DNA was only found below 60 mM salt. In addition, single strand DNA, ss/ds DNA boundaries and negatively supercoiling degree were not required for PaMutL nicking activity. Finally, the analysis of the incision sites revealed that PaMutL, as well as Bacillus thuringiensis MutL homologue, did not show DNA sequence specificity. PMID:23969026

  4. A Bird's-Eye View of Eco-Geomorphology From a Small Unmanned Aircraft System (UAS)

    NASA Astrophysics Data System (ADS)

    LeClair, A. J.; Hugenholtz, C.

    2012-12-01

    Physical disturbance regimes play important roles in shaping ecosystems and landscapes; however, our ability to detect disturbance often depends on the method and scale of observation. Here we use a relatively new method in order to detect and map the eco-geomorphic impacts of fossorial mammals in a grassland setting. It is well-known that digging and mound building activity by these animals is a form of biological disturbance that has a number of eco-geomorphic consequences, including: soil formation, hydrology, nutrient cycling, and succession. All these processes contribute to landscape heterogeneity and often increase local micro-topographic variations through mound formation. Most studies that have examined the eco-geomorphic role of fossorial mammals have been limited to observations using traditional field-based methods. While this has yielded important data about the localized effects, the cumulative, landscape-level impacts of such small-scale disturbance events are still largely unknown. While fossorial mammals such as pocket gophers (family Geomyidae) are assumed to be ubiquitous in the environments in which they occur, the small size of individual mounds has meant that mapping their biological footprint using traditional methods has been extremely difficult. Individual mounds disappear in the pixels of conventional remote sensing imagery, while their spatial distribution makes it impractical to study them beyond the plot scale. However, recent advances in both low cost, high-resolution digital cameras, and unmanned aerial systems (UAS), have made it possible to acquire landscape-level data that matches the scale of their disturbance, thus potentially bridging the gap between ground-based field methods and traditional remote sensing imagery. In this study we used UAS-acquired, sub-decimeter resolution imagery to map and quantify the extent of fossorial mammal disturbance in a 4 km2 area of the Great Sand Hills - a stabilized dune field in southwestern

  5. Genome sequence of Wickerhamomyces anomalus DSM 6766 reveals genetic basis of biotechnologically important antimicrobial activities.

    PubMed

    Schneider, Jessica; Rupp, Oliver; Trost, Eva; Jaenicke, Sebastian; Passoth, Volkmar; Goesmann, Alexander; Tauch, Andreas; Brinkrolf, Karina

    2012-05-01

    The ascomycetous yeast Wickerhamomyces anomalus (formerly Pichia anomala and Hansenula anomala) exhibits antimicrobial activities and flavoring features that are responsible for its frequent association with food, beverage and feed products. However, limited information on the genetic background of this yeast and its multiple capabilities are currently available. Here, we present the draft genome sequence of the neotype strain W. anomalus DSM 6766. On the basis of pyrosequencing, a de novo assembly of this strain resulted in a draft genome sequence with a total size of 25.47 Mbp. An automatic annotation using RAPYD generated 11 512 protein-coding sequences. This annotation provided the basis to analyse metabolic capabilities, phylogenetic relationships, as well as biotechnologically important features and yielded novel candidate genes of W. anomalus DSM 6766 coding for proteins participating in antimicrobial activities. PMID:22292503

  6. Determining Stand Parameters from Uas-Based Point Clouds

    NASA Astrophysics Data System (ADS)

    Yilmaz, V.; Serifoglu, C.; Gungor, O.

    2016-06-01

    In Turkey, forest management plans are produced by terrestrial surveying techniques for 10 or 20 year periods, which can be considered quite long to maintain the sustainability of forests. For a successful forest management plan, it is necessary to collect accurate information about the stand parameters and store them in dynamic and robust databases. The position, number, height and closure of trees are among the most important stand parameters required for a forest management plan. Determining the position of each single tree is challenging in such an area consisting of too many interlocking trees. Hence, in this study, an object-based tree detection methodology has been developed in MATLAB programming language to determine the position of each tree top in a highly closed area. The developed algorithm uses the Canopy Height Model (CHM), which is computed from the Digital Terrain Model (DTM) and Digital Surface Model (DSM) generated by using the point cloud extracted from the images taken from a UAS (Unmanned Aerial System). The heights of trees have been determined by using the CHM. The closure of the trees has been determined with the written MATLAB script. The results show that the developed tree detection methodology detected more than 70% of the trees successfully. It can also be concluded that the stand parameters may be determined by using the UAS-based point clouds depending on the characteristics of the study area. In addition, determination of the stand parameters by using point clouds reduces the time needed to produce forest management plans.

  7. Embedding Human Expert Cognition Into Autonomous UAS Trajectory Planning.

    PubMed

    Narayan, Pritesh; Meyer, Patrick; Campbell, Duncan

    2013-04-01

    This paper presents a new approach for the inclusion of human expert cognition into autonomous trajectory planning for unmanned aerial systems (UASs) operating in low-altitude environments. During typical UAS operations, multiple objectives may exist; therefore, the use of multicriteria decision aid techniques can potentially allow for convergence to trajectory solutions which better reflect overall mission requirements. In that context, additive multiattribute value theory has been applied to optimize trajectories with respect to multiple objectives. A graphical user interface was developed to allow for knowledge capture from a human decision maker (HDM) through simulated decision scenarios. The expert decision data gathered are converted into value functions and corresponding criteria weightings using utility additive theory. The inclusion of preferences elicited from HDM data within an automated decision system allows for the generation of trajectories which more closely represent the candidate HDM decision preferences. This approach has been demonstrated in this paper through simulation using a fixed-wing UAS operating in low-altitude environments. PMID:22949071

  8. UAS and Distributed Temperature Sensing Reveal Previously Unseen Atmospheric Processes

    NASA Astrophysics Data System (ADS)

    Higgins, C. W.; Liu, Z.; Holmes, H.; Wing, M.; Predosa, R. A.; Blunck, D.

    2015-12-01

    The frontier of atmospheric boundary layer research lies in times and places of complexity. Transitions between atmospheric states, buoyant flows over complex terrain, and times with only weak forcing mechanisms all have rich physical expressions of atmospheric flow that are not fully understood. These motions often span a large range of scales and are nonstationary. Traditional atmospheric measurement approaches are inadequate in these situations as they do not have the data density or the physical extent to capture the full range of motions. An unmanned aerial system (UAS) is used to lift distributed temperature sensing (DTS) technologies to observe the early morning transition from stable to unstably stratified conditions. The UAS/DTS combination yielded observations of temperature and humidity in the lower atmosphere with never-seen-before resolution and extent. The data reveal a complex interplay of motions that occur during the morning transition that ultimately results in the propagation and growth of unstable wave modes. The observations have given new insight into the appropriate scaling variables for the morning transition time.

  9. 77 FR 32699 - NASA Advisory Council; Aeronautics Committee; UAS Subcommittee Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-01

    ... SPACE ADMINISTRATION NASA Advisory Council; Aeronautics Committee; UAS Subcommittee Meeting AGENCY... Administration (NASA) announces a meeting of the Unmanned Aircraft Systems (UAS) Subcommittee of the Aeronautics Committee of the NASA Advisory Council. The meeting will be held for the purpose of soliciting, from...

  10. Rangeland remote sensing applications with unmanned aerial systems (UAS) in the national airspace: challenges and experiences

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In recent years, civilian applications of unmanned aerial systems (UAS) have increased considerably due to their greater availability and the miniaturization of sensors, GPS, inertial measurement units, and other hardware. UAS are well suited for rangeland remote sensing applications, because of the...

  11. Unmanned Aircraft Systems (UAS) for Vegetation Mapping: Very High Resolution Multispectral Imagery and Terrain Extraction

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In recent years, the interest in using unmanned aircraft systems (UAS) for remote sensing of natural resources has been growing considerably. Over the last few years, we have used a small UAS equipped with a low-cost digital camera to acquire thousands of images (6-8 cm GSD), which have been orthore...

  12. 78 FR 59974 - Centennial Challenges 2014 Unmanned Aircraft Systems (UAS) Airspace Operations Challenge (AOC)

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-30

    ... Challenge (AOC) AGENCY: National Aeronautics and Space Administration (NASA). NOTICE: (13-110). ACTION... Systems (UAS) Airspace Operations Challenge (AOC) is scheduled and teams that wish to compete may now... of interest and value to NASA and the nation. The 2014 UAS AOC is a prize competition designed...

  13. Classification of Unmanned Aircraft Systems. UAS Classification/Categorization for Certification

    NASA Technical Reports Server (NTRS)

    2004-01-01

    Category, class, and type designations are primary means to identify appropriate aircraft certification basis, operating rules/limitations, and pilot qualifications to operate in the National Airspace System (NAS). The question is whether UAS fit into existing aircraft categories or classes, or are unique enough to justify the creation of a new category/class. In addition, the characteristics or capabilities, which define when an UAS becomes a regulated aircraft, must also be decided. This issue focuses on UAS classification for certification purposes. Several approaches have been considered for classifying UAS. They basically group into either using a weight/mass basis, or a safety risk basis, factoring in the performance of the UAS, including where the UAS would operate. Under existing standards, aircraft must have a Type Certificate and Certificate of Airworthiness, in order to be used for "compensation or hire", a major difference from model aircraft. Newer technologies may make it possible for very small UAS to conduct commercial services, but that is left for a future discussion to extend the regulated aircraft to a lower level. The Access 5 position is that UAS are aircraft and should be regulated above the weight threshold differentiating them from model airplanes. The recommended classification grouping is summarized in a chart.

  14. Object relations theory and activity theory: a proposed link by way of the procedural sequence model.

    PubMed

    Ryle, A

    1991-12-01

    An account of object relations theory (ORT), represented in terms of the procedural sequence model (PSM), is compared to the ideas of Vygotsky and activity theory (AT). The two models are seen to be compatible and complementary and their combination offers a satisfactory account of human psychology, appropriate for the understanding and integration of psychotherapy. PMID:1786224

  15. Teacher Learning through Reciprocal Peer Coaching: An Analysis of Activity Sequences

    ERIC Educational Resources Information Center

    Zwart, R. C.; Wubbels, Th.; Bolhuis, S.; Bergen, Th. C. M.

    2008-01-01

    Just what and how eight experienced teachers in four coaching dyads learned during a 1-year reciprocal peer coaching trajectory was examined in the present study. The learning processes were mapped by providing a detailed description of reported learning activities, reported learning outcomes, and the relations between these two. The sequences of…

  16. Decreasing Sports Activity with Increasing Age? Findings from a 20-Year Longitudinal and Cohort Sequence Analysis

    ERIC Educational Resources Information Center

    Breuer, Christoph; Wicker, Pamela

    2009-01-01

    According to cross-sectional studies in sport science literature, decreasing sports activity with increasing age is generally assumed. In this paper, the validity of this assumption is checked by applying more effective methods of analysis, such as longitudinal and cohort sequence analyses. With the help of 20 years' worth of data records from the…

  17. Functional Brain Activation Differences in Stuttering Identified with a Rapid fMRI Sequence

    ERIC Educational Resources Information Center

    Loucks, Torrey; Kraft, Shelly Jo; Choo, Ai Leen; Sharma, Harish; Ambrose, Nicoline G.

    2011-01-01

    The purpose of this study was to investigate whether brain activity related to the presence of stuttering can be identified with rapid functional MRI (fMRI) sequences that involved overt and covert speech processing tasks. The long-term goal is to develop sensitive fMRI approaches with developmentally appropriate tasks to identify deviant speech…

  18. Transcriptomic sequencing reveals a set of unique genes activated by butyrate-induced histone modification

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Butyrate is a nutritional element with strong epigenetic regulatory activity as an inhibitor of histone deacetylases (HDACs). Based on the analysis of differentially expressed genes induced by butyrate in the bovine epithelial cell using deep RNA-sequencing technology (RNA-seq), a set of unique gen...

  19. Molecular analysis of UAS(E), a cis element containing stress response elements responsible for ethanol induction of the KlADH4 gene of Kluyveromyces lactis.

    PubMed

    Mazzoni, C; Santori, F; Saliola, M; Falcone, C

    2000-01-01

    KlADH4 is a gene of Kluyveromyces lactis encoding a mitochondrial alcohol dehydrogenase activity, which is specifically induced by ethanol and insensitive to glucose repression. In this work, we report the molecular analysis of UAS(E), an element of the KlADH4 promoter which is essential for the induction of KlADH4 in the presence of ethanol. UAS(E) contains five stress response elements (STREs), which have been found in many genes of Saccharomyces cerevisiae involved in the response of cells to conditions of stress. Whereas KlADH4 is not responsive to stress conditions, the STREs present in UAS(E) seem to play a key role in the induction of the gene by ethanol, a situation that has not been observed in the related yeast S. cerevisiae. Gel retardation experiments showed that STREs in the KlADH4 promoter can bind factor(s) under non-inducing conditions. Moreover, we observed that the RAP1 binding site present in UAS(E) binds KlRap1p. PMID:10724480

  20. Safely Enabling Civilian Unmanned Aerial System (UAS) Operations in Low-Altitude Airspace by Unmanned Aerial System Traffic Management (UTM)

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal Hemchandra

    2015-01-01

    Many UAS will operate at lower altitude (Class G, below 2000 feet). There is an urgent need for a system for civilian low-altitude airspace and UAS operations. Stakeholders want to work with NASA to enable safe operations.

  1. Safely Enabling Civilian Unmanned Aerial System (UAS) Operations In Low-Altitude Airspace By Unmanned Aerial System Traffic Management (UTM)

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal H.

    2015-01-01

    Many UAS will operate at lower altitude (Class G, below 2000 feet)There is urgent need for a system for civilian low-altitude airspace and UAS operations. Stakeholders want to work with NASA to enable safe operations.

  2. Application of Multiple Categories of Unmanned Aircraft Systems (uas) in Different Airspaces for Bushfire Monitoring and Response

    NASA Astrophysics Data System (ADS)

    Homainejad, N.; Rizos, C.

    2015-08-01

    Demand and interest in Unmanned Aircraft Systems (UAS) for civilian applications, and advances in technology such as development of sense-and-avoid systems, will soon allow UAS to be flown alongside manned aircrafts in non-segregated airspace. An area that can benefit from the application of UAS is the bushfire services sector. Currently such services rely on watchtowers, fixed-wing manned aircrafts and satellite data for reliable information. UAS are a promising alternative to traditional methods of collecting bushfire data. There are several varieties of UAS and each category has certain limitations, hence a combination of multiple UAS with features appropriate for bushfire emergencies can be used simultaneously for collecting valuable data. This paper will describe the general UAS categories, some characteristics of Australian bushfires, and speculate on how a combination of several UAS operating in different airspaces can be of benefit for bushfire response personnel and firefighters.

  3. Neoproterozoic oceanic remnants in eastern Brazil: Further evidence and refutation of an exclusively ensialic evolution for the Araçuaí West Congo orogen

    NASA Astrophysics Data System (ADS)

    Pedrosa-Soares, Antônio Carlos; Vidal, Philippe; Leonardos, Othon Henry; Bley de Brito Neves, Benjamin

    1998-06-01

    The Araçuaí (eastern Brazil) and West Congo (southwestern Africa) belts are counterparts of the same Neoproterozoic orogen located between the São Francisco and Congo cratons. The Macaúbas Group represents a major passive margin sequence and is a key unit for interpreting the evolution of that orogen. The Salinas Formation is the distal rock assemblage of the Macaúbas Group and consists of a deep-sea sand-mud sequence, and a volcanic-sedimentary unit called the Ribeirão da Folha facies. The latter includes metamorphosed volcanic-exhalative sediments associated with ocean-floor basalts (amphibolites). The magmatic protoliths of these amphibolites crystallized at about 816 ± 72 Ma (Sm-Nd whole-rock isochron, ɛNd(t) =+3.8 ± 0.2). Regional metamorphism reached the amphibolite facies at about 630 Ma (Rb-Sr whole-rock isochron), when slabs of ultramafic rocks were tectonically emplaced over the Ribeirão da Folha facies. We consider this volcanic-sedimentary facies and the coeval slabs of ultramafic rocks to be remnants of a branch of the Adamastor-Brazilide ocean. The extensive occurrence of syntectonic to late tectonic calc-alkalic granitoids along the internal domain of the Araçuaí belt implies that a reasonably large amount of ocean crust was consumed, via an east-dipping subduction zone, during formation of the Araçuaí West Congo orogen.

  4. Learning by subtraction: Hippocampal activity and effects of ethanol during the acquisition and performance of response sequences.

    PubMed

    Ketchum, Myles J; Weyand, Theodore G; Weed, Peter F; Winsauer, Peter J

    2016-05-01

    Learning is believed to be reflected in the activity of the hippocampus. However, neural correlates of learning have been difficult to characterize because hippocampal activity is integrated with ongoing behavior. To address this issue, male rats (n = 5) implanted with electrodes (n = 14) in the CA1 subfield responded during two tasks within a single test session. In one task, subjects acquired a new 3-response sequence (acquisition), whereas in the other task, subjects completed a well-rehearsed 3-response sequence (performance). Both tasks though could be completed using an identical response topography and used the same sensory stimuli and schedule of reinforcement. More important, comparing neural patterns during sequence acquisition to those during sequence performance allows for a subtractive approach whereby activity associated with learning could potentially be dissociated from the activity associated with ongoing behavior. At sites where CA1 activity was closely associated with behavior, the patterns of activity were differentially modulated by key position and the serial position of a response within the schedule of reinforcement. Temporal shifts between peak activity and responding on particular keys also occurred during sequence acquisition, but not during sequence performance. Ethanol disrupted CA1 activity while producing rate-decreasing effects in both tasks and error-increasing effects that were more selective for sequence acquisition than sequence performance. Ethanol also produced alterations in the magnitude of modulations and temporal pattern of CA1 activity, although these effects were not selective for sequence acquisition. Similar to ethanol, hippocampal micro-stimulation decreased response rate in both tasks and selectively increased the percentage of errors during sequence acquisition, and provided a more direct demonstration of hippocampal involvement during sequence acquisition. Together, these results strongly support the notion

  5. Sequence of the lid affects activity and specificity of Candida rugosa lipase isoenzymes.

    PubMed

    Brocca, Stefania; Secundo, Francesco; Ossola, Mattia; Alberghina, Lilia; Carrea, Giacomo; Lotti, Marina

    2003-10-01

    The fungus Candida rugosa produces multiple lipase isoenzymes (CRLs) with distinct differences in substrate specificity, in particular with regard to selectivity toward the fatty acyl chain length. Moreover, isoform CRL3 displays high activity towards cholesterol esters. Lipase isoenzymes share over 80% sequence identity but diverge in the sequence of the lid, a mobile loop that modulates access to the active site. In the active enzyme conformation, the open lid participates in the substrate-binding site and contributes to substrate recognition. To address the role of the lid in CRL activity and specificity, we substituted the lid sequences from isoenzymes CRL3 and CRL4 in recombinant rCRL1, thus obtaining enzymes differing only in this stretch of residues. Swapping the CRL3 lid was sufficient to confer to CRL1 cholesterol esterase activity. On the other hand, a specific shift in the chain-length specificity was not observed. Chimeric proteins displayed different sensitivity to detergents in the reaction medium. PMID:14500889

  6. Sequence of the lid affects activity and specificity of Candida rugosa lipase isoenzymes

    PubMed Central

    Brocca, Stefania; Secundo, Francesco; Ossola, Mattia; Alberghina, Lilia; Carrea, Giacomo; Lotti, Marina

    2003-01-01

    The fungus Candida rugosa produces multiple lipase isoenzymes (CRLs) with distinct differences in substrate specificity, in particular with regard to selectivity toward the fatty acyl chain length. Moreover, isoform CRL3 displays high activity towards cholesterol esters. Lipase isoenzymes share over 80% sequence identity but diverge in the sequence of the lid, a mobile loop that modulates access to the active site. In the active enzyme conformation, the open lid participates in the substrate-binding site and contributes to substrate recognition. To address the role of the lid in CRL activity and specificity, we substituted the lid sequences from isoenzymes CRL3 and CRL4 in recombinant rCRL1, thus obtaining enzymes differing only in this stretch of residues. Swapping the CRL3 lid was sufficient to confer to CRL1 cholesterol esterase activity. On the other hand, a specific shift in the chain-length specificity was not observed. Chimeric proteins displayed different sensitivity to detergents in the reaction medium. PMID:14500889

  7. Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity.

    PubMed

    Schöne, Stefanie; Jurk, Marcel; Helabad, Mahdi Bagherpoor; Dror, Iris; Lebars, Isabelle; Kieffer, Bruno; Imhof, Petra; Rohs, Remo; Vingron, Martin; Thomas-Chollier, Morgane; Meijsing, Sebastiaan H

    2016-01-01

    The glucocorticoid receptor (GR) binds as a homodimer to genomic response elements, which have particular sequence and shape characteristics. Here we show that the nucleotides directly flanking the core-binding site, differ depending on the strength of GR-dependent activation of nearby genes. Our study indicates that these flanking nucleotides change the three-dimensional structure of the DNA-binding site, the DNA-binding domain of GR and the quaternary structure of the dimeric complex. Functional studies in a defined genomic context show that sequence-induced changes in GR activity cannot be explained by differences in GR occupancy. Rather, mutating the dimerization interface mitigates DNA-induced changes in both activity and structure, arguing for a role of DNA-induced structural changes in modulating GR activity. Together, our study shows that DNA sequence identity of genomic binding sites modulates GR activity downstream of binding, which may play a role in achieving regulatory specificity towards individual target genes. PMID:27581526

  8. Seismic sequence near Zakynthos Island, Greece, April 2006: Identification of the activated fault plane

    NASA Astrophysics Data System (ADS)

    Serpetsidaki, A.; Sokos, E.; Tselentis, G.-A.; Zahradnik, J.

    2010-01-01

    The April 2006 earthquake sequence near Zakynthos (Western Greece) is analysed to identify the fault plane(-s). The sequence (33 events) was relocated to assess physical insight into the hypocenter uncertainty. Moment tensor solution of three major events was performed, simultaneously with the determination of the centroid position. Joint analysis of the hypocenter position, centroid position and nodal planes indicated sub-horizontal fault planes. Moment tensor solutions of 15 smaller events were performed under assumption that the source positions are those of the hypocenters (without seeking centroids). Their focal mechanisms are highly similar and agree with the analysis of the three major events. The preferable seismotectonic interpretation is that the whole sequence activated a single sub-horizontal fault zone at a depth of about 13 km, corresponding to the interplate subduction boundary. Considering that the Ionian Sea is a high-seismicity area, the identification of the seismic fault is significant for the seismic hazard investigation of the region.

  9. The amino acid sequence of monal pheasant lysozyme and its activity.

    PubMed

    Araki, T; Matsumoto, T; Torikata, T

    1998-10-01

    The amino acid sequence of monal pheasant lysozyme and its activity were analyzed. Carboxymethylated lysozyme was digested with trypsin and the resulting peptides were sequenced. The established amino acid sequence had one amino acid substitution at position 102 (Arg to Gly) comparing with Indian peafowl lysozyme and four amino acid substitutions at positions 3 (Phe to Tyr), 15 (His to Leu), 41 (Gln to His), and 121 (Gln to His) with chicken lysozyme. Analysis of the time-courses of reaction using N-acetylglucosamine pentamer as a substrate showed a difference of binding free energy change (-0.4 kcal/mol) at subsites A between monal pheasant and Indian peafowl lysozyme. This was assumed to be caused by the amino acid substitution at subsite A with loss of a positive charge at position 102 (Arg102 to Gly). PMID:9836434

  10. BCR repertoire sequencing: different patterns of B cell activation after two Meningococcal vaccines

    PubMed Central

    Galson, Jacob D.; Clutterbuck, Elizabeth A.; Trück, Johannes; Ramasamy, Maheshi N.; Münz, Márton; Fowler, Anna; Cerundolo, Vincenzo; Pollard, Andrew J.; Lunter, Gerton; Kelly, Dominic F.

    2015-01-01

    Next-generation sequencing was used to investigate the B cell receptor heavy chain transcript repertoire of different B cell subsets (naïve, marginal zone, IgM memory and IgG memory) at baseline, and of plasma cells 7 days following administration of serogroup ACWY meningococcal polysaccharide and protein-polysaccharide conjugate vaccines. Baseline B cell subsets could be distinguished from each other using a small number of repertoire properties (clonality, mutation from germ-line and complementarity-determining region 3 length) that were conserved between individuals. However, analyzing the complementarity-determining region 3 amino acid sequence (which is particularly important for antigen binding) of the baseline subsets showed few sequences shared between individuals. In contrast, day 7 plasma cells demonstrated nearly tenfold greater sequence sharing between individuals than the baseline subsets, consistent with the plasma cells being induced by the vaccine antigen, and sharing specificity for a more limited range of epitopes. By annotating plasma cell sequences based on IgG subclass usage and mutation, and also comparing them to the sequences of the baseline cell subsets, we were able to identify different signatures after the polysaccharide and conjugate vaccines. Plasma cells produced after conjugate vaccination were predominantly IgG1, and most related to IgG memory cells. In contrast, after polysaccharide vaccination, the plasma cells were predominantly IgG2, less mutated, and were equally likely to be related to marginal zone, IgM memory or IgG memory cells. High-throughput B cell repertoire sequencing thus provides a unique insight into patterns of B cell activation not possible from more conventional measures of immunogenicity. PMID:25976772

  11. Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification.

    PubMed

    Li, Cong-Jun; Li, Robert W; Baldwin, Ransom L; Blomberg, Le Ann; Wu, Sitao; Li, Weizhong

    2016-01-01

    Butyrate is a nutritional element with strong epigenetic regulatory activity as a histone deacetylase inhibitor. Based on the analysis of differentially expressed genes in the bovine epithelial cells using RNA sequencing technology, a set of unique genes that are activated only after butyrate treatment were revealed. A complementary bioinformatics analysis of the functional category, pathway, and integrated network, using Ingenuity Pathways Analysis, indicated that these genes activated by butyrate treatment are related to major cellular functions, including cell morphological changes, cell cycle arrest, and apoptosis. Our results offered insight into the butyrate-induced transcriptomic changes and will accelerate our discerning of the molecular fundamentals of epigenomic regulation. PMID:26819550

  12. Transcriptomic Sequencing Reveals a Set of Unique Genes Activated by Butyrate-Induced Histone Modification

    PubMed Central

    Li, Cong-Jun; Li, Robert W.; Baldwin, Ransom L.; Blomberg, Le Ann; Wu, Sitao; Li, Weizhong

    2016-01-01

    Butyrate is a nutritional element with strong epigenetic regulatory activity as a histone deacetylase inhibitor. Based on the analysis of differentially expressed genes in the bovine epithelial cells using RNA sequencing technology, a set of unique genes that are activated only after butyrate treatment were revealed. A complementary bioinformatics analysis of the functional category, pathway, and integrated network, using Ingenuity Pathways Analysis, indicated that these genes activated by butyrate treatment are related to major cellular functions, including cell morphological changes, cell cycle arrest, and apoptosis. Our results offered insight into the butyrate-induced transcriptomic changes and will accelerate our discerning of the molecular fundamentals of epigenomic regulation. PMID:26819550

  13. Use of Uas in a High Mountain Landscape: the Case of Gran Sommetta Rock Glacier (ao)

    NASA Astrophysics Data System (ADS)

    Dall'Asta, E.; Delaloye, R.; Diotri, F.; Forlani, G.; Fornari, M.; Morra di Cella, U.; Pogliotti, P.; Roncella, R.; Santise, M.

    2015-08-01

    Photogrammetry has been used since long time to periodically control the evolution of landslides, either from aerial images as well as from ground. Landslides control and monitoring systems face a large variety of cases and situations: in hardly accessible environments, like glacial areas and high mountain locations, it is not simple finding a survey method and a measurement control system, which are capable to reliably assess, with low costs, the expected displacement and its accuracy. For this reason, the behaviour of these events presents the geologists and the surveyor each time with different challenges. The use of UAS (Unmanned Aerial System) represents, in this context, a recent and valid option to perform the data acquisition both in safety and quickly, avoiding hazards and risks for the operators while at the same time containing the costs. The paper presents an innovative monitoring system based on UAS-photogrammetry, GNSS survey and DSM change detection techniques to evaluate the Gran Sommetta rock glacier surface movements over the period 2012-2014. Since 2012, the surface movements of the glacier are monitored by ARPAVdA (a regional environmental protection agency) as a case study for the impact of climate change on high-mountain infrastructures. In such scenarios, in fact, a low-cost monitoring activity can provide important data to improve our knowledge about glacier dynamics connected to climate changes and to prevent risks in anthropic Alps areas. To evaluate the displacements of the rock glacier different techniques were proposed: the most reliable uses the orthophoto of the area and rely on a manual identification of corresponding features performed by a trained operator. To further limit the costs and improve the density of displacement information two automatic procedures were developed as well.

  14. Deep sequencing reveals the complete genome and evidence for transcriptional activity of the first virus-like sequences identified in Aristotelia chilensis (Maqui Berry).

    PubMed

    Villacreses, Javier; Rojas-Herrera, Marcelo; Sánchez, Carolina; Hewstone, Nicole; Undurraga, Soledad F; Alzate, Juan F; Manque, Patricio; Maracaja-Coutinho, Vinicius; Polanco, Victor

    2015-04-01

    Here, we report the genome sequence and evidence for transcriptional activity of a virus-like element in the native Chilean berry tree Aristotelia chilensis. We propose to name the endogenous sequence as Aristotelia chilensis Virus 1 (AcV1). High-throughput sequencing of the genome of this tree uncovered an endogenous viral element, with a size of 7122 bp, corresponding to the complete genome of AcV1. Its sequence contains three open reading frames (ORFs): ORFs 1 and 2 shares 66%-73% amino acid similarity with members of the Caulimoviridae virus family, especially the Petunia vein clearing virus (PVCV), Petuvirus genus. ORF1 encodes a movement protein (MP); ORF2 a Reverse Transcriptase (RT) and a Ribonuclease H (RNase H) domain; and ORF3 showed no amino acid sequence similarity with any other known virus proteins. Analogous to other known endogenous pararetrovirus sequences (EPRVs), AcV1 is integrated in the genome of Maqui Berry and showed low viral transcriptional activity, which was detected by deep sequencing technology (DNA and RNA-seq). Phylogenetic analysis of AcV1 and other pararetroviruses revealed a closer resemblance with Petuvirus. Overall, our data suggests that AcV1 could be a new member of Caulimoviridae family, genus Petuvirus, and the first evidence of this kind of virus in a fruit plant. PMID:25855242

  15. Deep Sequencing Reveals the Complete Genome and Evidence for Transcriptional Activity of the First Virus-Like Sequences Identified in Aristotelia chilensis (Maqui Berry)

    PubMed Central

    Villacreses, Javier; Rojas-Herrera, Marcelo; Sánchez, Carolina; Hewstone, Nicole; Undurraga, Soledad F.; Alzate, Juan F.; Manque, Patricio; Maracaja-Coutinho, Vinicius; Polanco, Victor

    2015-01-01

    Here, we report the genome sequence and evidence for transcriptional activity of a virus-like element in the native Chilean berry tree Aristotelia chilensis. We propose to name the endogenous sequence as Aristotelia chilensis Virus 1 (AcV1). High-throughput sequencing of the genome of this tree uncovered an endogenous viral element, with a size of 7122 bp, corresponding to the complete genome of AcV1. Its sequence contains three open reading frames (ORFs): ORFs 1 and 2 shares 66%–73% amino acid similarity with members of the Caulimoviridae virus family, especially the Petunia vein clearing virus (PVCV), Petuvirus genus. ORF1 encodes a movement protein (MP); ORF2 a Reverse Transcriptase (RT) and a Ribonuclease H (RNase H) domain; and ORF3 showed no amino acid sequence similarity with any other known virus proteins. Analogous to other known endogenous pararetrovirus sequences (EPRVs), AcV1 is integrated in the genome of Maqui Berry and showed low viral transcriptional activity, which was detected by deep sequencing technology (DNA and RNA-seq). Phylogenetic analysis of AcV1 and other pararetroviruses revealed a closer resemblance with Petuvirus. Overall, our data suggests that AcV1 could be a new member of Caulimoviridae family, genus Petuvirus, and the first evidence of this kind of virus in a fruit plant. PMID:25855242

  16. Analysis of UAS DAA Surveillance in Fast-Time Simulations without DAA Mitigation

    NASA Technical Reports Server (NTRS)

    Thipphavong, David P.; Santiago, Confesor; Isaacson, David R.; Lee, Seung Man; Refai, Mohamad Said; Snow, James William

    2015-01-01

    Realization of the expected proliferation of Unmanned Aircraft System (UAS) operations in the National Airspace System (NAS) depends on the development and validation of performance standards for UAS Detect and Avoid (DAA) Systems. The RTCA Special Committee 228 is charged with leading the development of draft Minimum Operational Performance Standards (MOPS) for UAS DAA Systems. NASA, as a participating member of RTCA SC-228 is committed to supporting the development and validation of draft requirements for DAA surveillance system performance. A recent study conducted using NASA's ACES (Airspace Concept Evaluation System) simulation capability begins to address questions surrounding the development of draft MOPS for DAA surveillance systems. ACES simulations were conducted to study the performance of sensor systems proposed by the SC-228 DAA Surveillance sub-group. Analysis included but was not limited to: 1) number of intruders (both IFR and VFR) detected by all sensors as a function of UAS flight time, 2) number of intruders (both IFR and VFR) detected by radar alone as a function of UAS flight time, and 3) number of VFR intruders detected by all sensors as a function of UAS flight time. The results will be used by SC-228 to inform decisions about the surveillance standards of UAS DAA systems and future requirements development and validation efforts.

  17. Recent Advances in the Tempest UAS for In-Situ Measurements in Highly-Dynamic Environments

    NASA Astrophysics Data System (ADS)

    Argrow, B. M.; Frew, E.; Houston, A. L.; Weiss, C.

    2014-12-01

    The spring 2010 deployment of the Tempest UAS during the VORTEX2 field campaign verified that a small UAS, supported by a customized mobile communications, command, and control (C3) architecture, could simultaneously satisfy Federal Aviation Administration (FAA) airspace requirements, and make in-situ thermodynamic measurements in supercell thunderstorms. A multi-hole airdata probe was recently integrated into the Tempest UAS airframe and verification flights were made in spring 2013 to collect in-situ wind measurements behind gust fronts produced by supercell thunderstorms in northeast Colorado. Using instantaneous aircraft attitude estimates from the autopilot, the in-situ measurements were converted to inertial wind estimates, and estimates of uncertainty in the wind measurements was examined. To date, the limited deployments of the Tempest UAS have primarily focused on addressing the engineering and regulatory requirements to conduct supercell research, and the Tempest UAS team of engineers and meteorologists is preparing for deployments with the focus on collecting targeted data for meteorological exploration and hypothesis testing. We describe the recent expansion of the operations area and altitude ceiling of the Tempest UAS, engineering issues for accurate inertial wind estimates, new concepts of operation that include the simultaneous deployment of multiple aircraft with mobile ground stations, and a brief description of our current effort to develop a capability for the Tempest UAS to perform autonomous path planning to maximize energy harvesting from the local wind field for increased endurance.

  18. Quantitative analysis of the relationship between nucleotide sequence and functional activity.

    PubMed Central

    Stormo, G D; Schneider, T D; Gold, L

    1986-01-01

    Matrices can be used to evaluate sequences for functional activity. Multiple regression can solve for the matrix that gives the best fit between sequence evaluations and quantitative activities. This analysis shows that the best model for context effects on suppression by su2 involves primarily the two nucleotides 3' to the amber codon, and that their contributions are independent and additive. Context effects on 2AP mutagenesis also involve the two nucleotides 3' to the 2AP insertion, but their effects are not independent. In a construct for producing beta-galactosidase, the effects on translational yields of the tri-nucleotide 5' to the initiation codon are dependent on the entire triplet. Models based on these quantitative results are presented for each of the examples. PMID:3092188

  19. Complete genome sequence of the cold-active bacteriophage VMY22 from Bacillus cereus.

    PubMed

    Qin, Kunhao; Cheng, Benxu; Zhang, Shengting; Wang, Nan; Fang, Yuan; Zhang, Qi; Kuang, Anxiu; Lin, Lianbing; Ji, Xiuling; Wei, Yunlin

    2016-06-01

    The cold-active bacteriophage VMY22, belonging to the Podoviridae family, was isolated from Mingyong Glacier in China. Sequence analysis revealed that the genome is 18,609 bp long, with an overall G + C content of 36.4 mol%, and 25 open reading frames (ORFs). The sequence contains 46 potential promoters, 6 transcription terminators, and no tRNAs. Most of the ORFs show a high degree of similarity to B103 (NC_004165). Two noteworthy findings were made. First, one of the predicted proteins, ORF 19, shows high sequence similarity to the bacteriocin biosynthesis protein from Bacillus cereus. From this information, we propose that the VMY22 phage is at an intermediate phase in its coevolution with its bacterial host. Second, seven of the hypothetical proteins appear to be unique to this cold-active B. cereus phage (i.e., not found in temperate-active B. cereus phages). These observations add to our current knowledge about the coevolution of bacteriophages and their hosts. The identification of a novel group of gene and protein structures and functions will lead to a better understanding of cold-adaptation mechanisms in bacteria and their bacteriophages. PMID:26941234

  20. Analysis of Well-Clear Boundary Models for the Integration of UAS in the NAS

    NASA Technical Reports Server (NTRS)

    Upchurch, Jason M.; Munoz, Cesar A.; Narkawicz, Anthony J.; Chamberlain, James P.; Consiglio, Maria C.

    2014-01-01

    The FAA-sponsored Sense and Avoid Workshop for Unmanned Aircraft Systems (UAS) defnes the concept of sense and avoid for remote pilots as "the capability of a UAS to remain well clear from and avoid collisions with other airborne traffic." Hence, a rigorous definition of well clear is fundamental to any separation assurance concept for the integration of UAS into civil airspace. This paper presents a family of well-clear boundary models based on the TCAS II Resolution Advisory logic. Analytical techniques are used to study the properties and relationships satisfied by the models. Some of these properties are numerically quantifed using statistical methods.

  1. A Framework for Safe Integration of Small UAS Into the NAS

    NASA Technical Reports Server (NTRS)

    Logan, Michael J.; Bland, Geoffrey; Murray, Jennifer

    2011-01-01

    This paper discusses a proposed framework for the safe integration of small unmanned aerial systems (sUAS) into the National Airspace System (NAS). The paper examines the potential uses of sUAS to build an understanding of the location and frequency of potential future flight operations based on the future applications of the sUAS systems. The paper then examines the types of systems that would be required to meet the application-level demand to determine classes of platforms and operations. Finally, a framework is proposed for both airworthiness and operations that attempts to balance safety with utility for these important systems.

  2. Purification and sequencing of the active site tryptic peptide from penicillin-binding protein 1b of Escherichia coli

    SciTech Connect

    Nicholas, R.A.; Suzuki, H.; Hirota, Y.; Strominger, J.L.

    1985-07-02

    This paper reports the sequence of the active site peptide of penicillin-binding protein 1b from Escherichia coli. Purified penicillin-binding protein 1b was labeled with (/sup 14/C)penicillin G, digested with trypsin, and partially purified by gel filtration. Upon further purification by high-pressure liquid chromatography, two radioactive peaks were observed, and the major peak, representing over 75% of the applied radioactivity, was submitted to amino acid analysis and sequencing. The sequence Ser-Ile-Gly-Ser-Leu-Ala-Lys was obtained. The active site nucleophile was identified by digesting the purified peptide with aminopeptidase M and separating the radioactive products on high-pressure liquid chromatography. Amino acid analysis confirmed that the serine residue in the middle of the sequence was covalently bonded to the (/sup 14/C)penicilloyl moiety. A comparison of this sequence to active site sequences of other penicillin-binding proteins and beta-lactamases is presented.

  3. Sequence analysis, expression, and binding activity of recombinant major outer sheath protein (Msp) of Treponema denticola.

    PubMed Central

    Fenno, J C; Müller, K H; McBride, B C

    1996-01-01

    The gene encoding the major outer sheath protein (Msp) of the oral spirochete Treponema denticola ATCC 35405 was cloned, sequenced, and expressed in Escherichia coli. Preliminary sequence analysis showed that the 5' end of the msp gene was not present on the 5.5-kb cloned fragment described in a recent study (M. Haapasalo, K. H. Müller, V. J. Uitto, W. K. Leung, and B. C. McBride, Infect. Immun. 60:2058-2065,1992). The 5' end of msp was obtained by PCR amplification from a T. denticola genomic library, and an open reading frame of 1,629 bp was identified as the coding region for Msp by combining overlapping sequences. The deduced peptide consisted of 543 amino acids and had a molecular mass of 58,233 Da. The peptide had a typical prokaryotic signal sequence with a potential cleavage site for signal peptidase 1. Northern (RNA) blot analysis showing the msp transcript to be approximately 1.7 kb was consistent with the identification of a promoter consensus sequence located optimally upstream of msp and a transcription termination signal found downstream of the stop codon. The entire msp sequence was amplified from T. denticola genomic DNA and cloned in E. coli by using a tightly regulated T7 RNA polymerase vector system. Expression of Msp was toxic to E. coli when the entire msp gene was present. High levels of Msp were produced as inclusion bodies when the putative signal peptide sequence was deleted and replaced by a vector-encoded T7 peptide sequence. Recombinant Msp purified to homogeneity from a clone containing the full-length msp gene adhered to immobilized laminin and fibronectin but not to bovine serum albumin. Attachment of recombinant Msp was decreased in the presence of soluble substrate. Attachment of T. denticola to immobilized laminin and fibronectin was increased by pretreatment of the substrate with recombinant Msp. These studies lend further support to the hypothesis that Msp mediates the extracellular matrix binding activity of T. denticola. PMID

  4. The application of m-sequences to bi-static active sonar

    NASA Astrophysics Data System (ADS)

    Deferrari, Harry A.

    2003-10-01

    The m-sequences are ideal pulse compression signals that combine the energy of CW with the resolution of a pulse. Successful applications include numerous acoustic propagation experiments and the Global Positioning System. Yet, early attempts (circa 1960) to apply m-sequences to mono-static active sonar were unsuccessful. Through the years, Birdsall, Metzger and others have developed a body of theory, numerical methods and at-sea demonstrations that establish the feasibility of a novel bi-static approach-one that holds promise in high reverberation shallow water environs. An analysis is presented here. The approach includes (1) continuous transmission of long m-sequences (2) synchronous sampling to form a CON (Complete Ortho-Normal) data set; (3) direct blast removal by HCCO (Hyperspace Cancellation by Coordinate Zeroing); and (4) a full range waveform Doppler search. Ultra-fast Hadamard Transforms speed up the direct waveform pulse m-sequence pulse compression and the inverse pulse waveform transform and thereby allow timely execution of the intensive computational burden. The result is a demonstrable approach that produces a gain of 30 dB over a simple pulse and 10 dB over other sonar signals. In the end, the approach requires continuous transmission and reception as opposed to ping and listen an awkward concept at first.

  5. Biology of Treponema pallidum: correlation of functional activities with genome sequence data.

    PubMed

    Norris, S J; Cox, D L; Weinstock, G M

    2001-01-01

    Aspects of the biology of T. pallidum subsp. pallidum, the agent of syphilis, are examined in the context of a century of experimental studies and the recently determined genome sequence. T. pallidum and a group of closely related pathogenic spirochetes have evolved to become highly invasive, persistent pathogens with little toxigenic activity and an inability to survive outside the mammalian host. Analysis of the genome sequence confirms morphologic studies indicating the lack of lipopolysaccharide and lipid biosynthesis mechanisms, as well as a paucity of outer membrane protein candidates. The metabolic capabilities and adaptability of T. pallidum are minimal, and this relative deficiency is reflected by the absence of many pathways, including the tricarboxylic acid cycle, components of oxidative phosphorylation, and most biosynthetic pathways. Although multiplication of T. pallidum has been obtained in a tissue culture system, continuous in vitro culture has not been achieved. The balance of oxygen utilization and toxicity is key to the survival and growth of T. pallidum, and the genome sequence reveals a similarity to lactic acid bacteria that may be useful in understanding this relationship. The identification of relatively few genes potentially involved in pathogenesis reflects our lack of understanding of invasive pathogens relative to toxigenic organisms. The genome sequence will provide useful raw data for additional functional studies on the structure, metabolism, and pathogenesis of this enigmatic organism. PMID:11200228

  6. Requirement for HIV-1 TAR sequences for Tat activation in rodent cells.

    PubMed

    Sutton, J A; Braddock, M; Kingsman, A J; Kingsman, S M

    1995-01-10

    HIV-1 gene expression is activated via an interaction between the virally encoded Tat protein and a target RNA, TAR. TAR is located at the immediate 5' end of all viral mRNAs and comprises a partially base-paired stem with a tripyrimidine bulge in the upper stem and a hexanucleotide loop. In vitro, Tat binds specifically to the bulge and upper stem region with no requirement for the loop. In contrast, when Tat activation is analyzed in primate cells, mutations in the loop abolish activation, suggesting a critical role for loop binding cellular factors. However, in rodent cells the reverse is true. Messages with a mutation in the TAR loop are activated whereas messages harboring a wild-type TAR sequence are not activated. By testing the effect of mutations in the bulge and stem in the context of mutation in the loop we now show that this loop-independent activation by Tat in rodent cells requires the critical bulge-stem sequences needed for Tat binding in vitro. These data suggest that in rodent cells, as in vitro, Tat does not require a loop binding cofactor. In rodent cells containing human chromosome 12 (CHO12), however, Tat activation is both bulge and loop dependent. It appears that rodent cells, but not CHO12 cells, are refractory to the normal Tat/TAR activation pathway not by virtue of lacking a loop binding cofactor, but rather by the presence of a loop binding inhibitor of either Tat binding or the activation process. PMID:7530399

  7. Sequence specific inhibition of human type II phospholipase A2 enzyme activity by phosphorothioate oligonucleotides.

    PubMed Central

    Bennett, C F; Chiang, M Y; Wilson-Lingardo, L; Wyatt, J R

    1994-01-01

    Phosphorothioate oligonucleotides were identified which directly inhibited human type II phospholipase A2 (PLA2) enzyme activity in a sequence specific manner. The minimum pharmacophore common to all oligonucleotides which inhibited PLA2 enzyme activity consisted of two sets of three or more consecutive guanosine residues in a row. These oligonucleotides appear to form G quartets resulting in the formation of oligonucleotide aggregates. Additionally, a phosphorothioate backbone was required to be effective inhibitors of type II PLA2. The activity of one oligodeoxynucleotide, IP 3196 (5'-GGGTGGGTATAGAAGGGCTCC-3') has been characterized in more detail. IP 3196 inhibited PLA2 enzyme activity when the substrate was presented in the form of a phospholipid bilayer but not when presented in the form of a mixed micelle with anionic detergents. Human type II PLA2 was 50-fold more sensitive to inhibition by IP 3196 than venom and pancreatic type I enzymes. These data demonstrate that phosphorothioate oligonucleotides can specifically inhibit human type II PLA2 enzyme activity in a sequence specific manner. PMID:8065936

  8. Sequence-independent induction of Sp1 transcription factor activity by phosphorothioate oligodeoxynucleotides.

    PubMed Central

    Perez, J R; Li, Y; Stein, C A; Majumder, S; van Oorschot, A; Narayanan, R

    1994-01-01

    Modified analogues of antisense oligodeoxynucleotides (ODNs), particularly phosphorothioates ([S]ODNs), have been extensively used to inhibit gene expression. The potential sequence specificity of antisense oligomers makes them attractive as molecular drugs for human diseases. The use of antisense [S]ODNs to inhibit gene expression has been complicated by frequent nonspecific effects. In this study we show in diverse cell types that [S]ODNs, independent of their base sequence, mediated the induction of an Sp1 nuclear transcription factor. The [S]ODN-mediated Sp1 induction was rapid and was associated with elevated levels of Sp1 protein. This induction was dependent on NF-kappa B activity, since inhibition of NF-kappa B activity abolished the [S]ODN-induced Sp1 activity. [S]ODN-induced Sp1 activity was seen in mouse spleen cells following in vivo administration. Sp1 activity induced by [S]ODNs required the tyrosine kinase pathway and did not have transactivating potential. These results may help to explain some of the non-specific effects often seen with [S]ODNs. Images PMID:8016096

  9. Determination of Uas Trajectory in a Known Environment from Fpv Video

    NASA Astrophysics Data System (ADS)

    Li-Chee-Ming, J.; Armenakis, C.

    2013-08-01

    This paper presents a novel self-localization method. The algorithm automatically establishes correspondence between the FPV video streamed from a UAS flying in a structured urban environment and its 3D model. The resulting camera pose provides a precise navigation solution in the densely crowded environment. Initially, Vertical Line Features are extracted from a streamed FPV video frame, as the camera is kept approximately leveled through a gimbal system. The features are then matched with Vertical Line Features extracted from a synthetic image of the 3D model. A space resection is performed to provide the EOPs for this frame. The features are tracked in the next frame, followed by an incremental triangulation. The main contribution of this paper lies in automating this process as an FPV video sequence typically consists of thousands of frames. Accuracies of the position and orientation parameters of the video camera and the validation checks of the estimated parameters are presented. Future work includes testing the method in real-time to determine latencies and reliability, and multi-directional field of view of the FPV video camera.

  10. Estimation of spatially distributed turbulent heat fluxes using thermal information captured from an UAS

    NASA Astrophysics Data System (ADS)

    Brenner, Claire; Thiem, Christina Elisabeth; Bernhardt, Matthias; Schulz, Karsten

    2016-04-01

    Evapotranspiration is a key component of the Earth's water and energy cycle. However, measuring evapotranspiration is difficult and distributed information with high spatial resolution is rare. Land surface temperature (LST) is often used as source of data for the estimation of evapotranspiration. Actual LST is mainly controlled by the amount of incoming radiation, surface albedo, water availability, ventilation of the surface and in case of vegetation stands also by the intensity of the transpiration process. Thus it contains valuable information on the actual state of the soil-vegetation-atmosphere system. Typically LST information is available from satellite imagery or from radiometers installed at experimental sites. Thus, measured LST is either representative for areas of hundreds of square meters (satellites), or for certain points (radiometers). Thermal imaging from unmanned aerial systems (UAS) can be used for addressing this scale gap and is a trade-off between flexibility and ease of use on the one hand and spatial coverage on the other hand. In this study we have measured surface temperatures at a grassland site in Luxemburg in July 2015 by means of a thermal infrared camera mounted on an octocopter drone. At the same time scintillometer measurements were made at the same field. The experimental set-up was completed by meteorological and radiation measurements. UAS flights were conducted on a sequence of days over a time period of 2 weeks and with up to ten flights a day in order to monitor diurnal variation of LST. The observed spatially distributed surface temperatures were then used to estimate sensible and latent heat fluxes using three algorithms. All of them make use of observed vertical temperature gradients between surface and atmosphere but do show a different complexity. Two of them are single-source models while one is a dual-source representation of the soil-vegetation system. Although the experimental site was fully covered by grass, LST

  11. Differences between MyoD DNA binding and activation site requirements revealed by functional random sequence selection.

    PubMed Central

    Huang, J; Blackwell, T K; Kedes, L; Weintraub, H

    1996-01-01

    A method has been developed for selecting functional enhancer/promoter sites from random DNA sequences in higher eukaryotic cells. Of sequences that were thus selected for transcriptional activation by the muscle-specific basic helix-loop-helix protein MyoD, only a subset are similar to the preferred in vitro binding consensus, and in the same promoter context an optimal in vitro binding site was inactive. Other sequences with full transcriptional activity instead exhibit sequence preferences that, remarkably, are generally either identical or very similar to those found in naturally occurring muscle-specific promoters. This first systematic examination of the relation between DNA binding and transcriptional activation by basic helix-loop-helix proteins indicates that binding per se is necessary but not sufficient for transcriptional activation by MyoD and implies a requirement for other DNA sequence-dependent interactions or conformations at its binding site. PMID:8668207

  12. Hemodynamic importance of preserving the normal sequence of ventricular activation in permanent cardiac pacing.

    PubMed

    Leclercq, C; Gras, D; Le Helloco, A; Nicol, L; Mabo, P; Daubert, C

    1995-06-01

    Pacing the right ventricle in the apex profoundly modifies the sequence of activation and thus the sequence of contraction and relaxation of the left ventricle. To evaluate the relative importance of preserving normal ventricular activation sequence and optimal atrioventricular (AV) synchrony in permanent pacing, we compared the effects of three pacing modes: AAI, preserving both normal AV synchrony and normal activation sequence; DDD, with complete ventricular capture that preserves only AV synchrony; and VVI, disrupting both, at rest and during exercise. Hemodynamic and radionuclide studies were performed in 11 patients who had normal intrinsic conduction and who were implanted on a long-term basis with a DDDR pacemaker for isolated sinus node dysfunction. AAI versus DDD and VVI significantly increased cardiac output at rest (6.6 +/- 1.3 L/min vs 6 +/- 0.9 L/min vs 5 +/- 1 L/min; p < 0.01) and during exercise (13.5 +/- 2 L/min vs 12.1 +/- 2.2 L/min vs 14.4 +/- 2.1 L/min; p < 0.01). Pulmonary capillary wedge pressure was lowest with AAI (15.4 +/- 4.5 mm Hg), with an average reduction of 17% compared with DDD (19.6 +/- 5 mm Hg; p < 0.01) and of 30% compared with VVI (25.8 +/- 7 mm Hg; p < 0.01) during exercise. Identical benefits were observed for all other hemodynamic parameters: right atrial pressure, pulmonary artery pressure, left ventricular (LV) stroke work index, and systemic vascular resistances. LV ejection fraction was significantly higher in AAI than in DDD at rest (61% vs 58%, respectively; p < 0.05) and during exercise (65% vs 60%, respectively; p < 0.05). This improvement in LV systolic function resulted principally from the increase in septal ejection fraction. LV filling also was improved in AAI as demonstrated by a significant increase in peak filling rate at rest and during exercise. These data show the importance of preserving, whenever possible, not only normal AV synchrony but also normal ventricular activation sequence in permanent cardiac

  13. DNA sequence, structure, and tyrosine kinase activity of the Drosophila melanogaster abelson proto-oncogene homolog

    SciTech Connect

    Henkemeyer, M.J.; Bennett, R.L.; Gertler, F.B.; Hoffmann, F.M.

    1988-02-01

    The authors report their molecular characterization of the Drosophila melanogaster Abelson gene (abl), a gene in which recessive loss-of-function mutations result in lethality at the pupal stage of development. This essential gene consists of 10 exons extending over 26 kilobase pairs of genomic DNA. The DNA sequence encodes a protein of 1,520 amino acids with strong sequence similarity to the human c-abl proto-oncogene beginning in the type 1b 5' exon and extending through the region essential for tyrosine kinase activity. When the tyrosine kinase homologous region was expressed in Escherichia coli, phosphorylation of proteins on tyrosine residues was observed with an antiphosphotyrosine antibody. These results show that the abl gene is highly conserved through evolution and encodes a functional tyrosine protein kinase required for Drosophila development.

  14. Structurally complex and highly active RNA ligases derived from random RNA sequences

    NASA Technical Reports Server (NTRS)

    Ekland, E. H.; Szostak, J. W.; Bartel, D. P.

    1995-01-01

    Seven families of RNA ligases, previously isolated from random RNA sequences, fall into three classes on the basis of secondary structure and regiospecificity of ligation. Two of the three classes of ribozymes have been engineered to act as true enzymes, catalyzing the multiple-turnover transformation of substrates into products. The most complex of these ribozymes has a minimal catalytic domain of 93 nucleotides. An optimized version of this ribozyme has a kcat exceeding one per second, a value far greater than that of most natural RNA catalysts and approaching that of comparable protein enzymes. The fact that such a large and complex ligase emerged from a very limited sampling of sequence space implies the existence of a large number of distinct RNA structures of equivalent complexity and activity.

  15. Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project Subcommittee Final

    NASA Technical Reports Server (NTRS)

    Johnson, Chuck; Griner, James H.; Hayhurst, Kelly J.; Shively, Robert J.; Consiglio, Maria; Muller, Eric; Murphy, James; Kim, Sam

    2012-01-01

    UAS Integration in the NAS Project overview with details from each of the subprojects. Subprojects include: Communications, Certification, Integrated Test and Evaluation, Human Systems Integration, and Separation Assurance/Sense and Avoid Interoperability.

  16. The upper airway in sleep-disordered breathing: UA in SDB.

    PubMed

    Taranto Montemurro, L; Kasai, T

    2014-02-01

    Sleep disordered breathing (SDB) is a common condition and could be a risk factor for cardiovascular morbidity and mortality. However, the pathogenesis of SDB remains to be elucidated. In general, SDB is divided into two forms, obstructive and central sleep apnea (OSA and CSA, respectively). OSA results from the sleep-related collapse of the upper airway (UA) in association with multiple factors like race, gender, obesity and UA dimensions. CSA primarily results from a fall in PaCO2 to a level below the apnea threshold during sleep through the reflex inhibition of central respiratory drive. It has been reported that UA alterations (i.e., collapse or dilation) can be observed in CSA. This review highlights the roles of the UA in the pathogenesis and pathophysiology of SDB. PMID:24572450

  17. Examination of Frameworks for Safe Integration of Intelligent Small UAS into the NAS

    NASA Technical Reports Server (NTRS)

    Logan, Michael J.

    2012-01-01

    This paper discusses a proposed framework for the safe integration of small unmanned aerial systems (sUAS) into the National Airspace System (NAS). The paper briefly examines the potential uses of sUAS to build an understanding of the location and frequency of potential future flight operations based on the future applications of the sUAS systems. The paper then examines the types of systems that would be required to meet the application-level demand to determine "classes" of platforms and operations. A framework for categorization of the "intelligence" level of the UAS is postulated for purposes of NAS integration. Finally, constraints on the intelligent systems are postulated to ensure their ease of integration into the NAS.

  18. 76 FR 75565 - NASA Advisory Council; Aeronautics Committee; Unmanned Aircraft Systems (UAS) Subcommittee Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-02

    ... From the Federal Register Online via the Government Publishing Office NATIONAL AERONAUTICS AND SPACE ADMINISTRATION NASA Advisory Council; Aeronautics Committee; Unmanned Aircraft Systems (UAS) Subcommittee Meeting AGENCY: National Aeronautics and Space Administration. ACTION: Notice of Meeting....

  19. Determining the rheology of active lava flows from photogrammetric image sequence processing

    NASA Astrophysics Data System (ADS)

    James, M. R.; Robson, S.; Pinkerton, H.

    2010-12-01

    We describe a photogrammetric approach used to determine the rheological properties of active lava flows based on stereo image sequences. Bulk rheological properties can be estimated from measurements of flow slope, velocity and dimensions and so, at flow-fronts, they can be calculated from sequential digital elevation models (DEMs) acquired as the flow advances over new ground. For useful flow parameters to be extracted, DEMs may need to be obtained at approximately minute intervals, over durations of up to multiple hours. To deliver such data, we use oblique stereo pair sequences captured by digital SLR cameras and a semi-automated DEM-generation pipeline. Although similar data could be acquired with a terrestrial laser scanner, with deployments in remote and hazardous regions the photogrammetric approach offers significant logistical advantages in terms of reduced equipment cost, bulk, weight and power requirements. We describe the application of the technique to an active lava flow on Mount Etna, Sicily, in 2006. Image sequences were acquired from two tripod-mounted cameras over a period of ~3 hours, as the flow-front advanced ~15 m. Photogrammetric control was provided by 11 targets placed in the scene, with their coordinates determined by dGPS. The cameras were synchronised by a shutter release cable and triggered by an external timer (intervalometer). Image pairs were obtained every minute with DEMs extraction carried out on every fourth epoch; 57 DEMs, with a 0.25-m resolution, were generated. We describe the challenges associated with data collection in this remote environment and the techniques required to automate the photogrammetric analysis and sequence-DEM generation.

  20. NASA Unmanned Aircraft (UA) Control and Non-Payload Communication (CNPC) System Waveform Trade Studies

    NASA Technical Reports Server (NTRS)

    Chavez, Carlos; Hammel, Bruce; Hammel, Allan; Moore, John R.

    2014-01-01

    Unmanned Aircraft Systems (UAS) represent a new capability that will provide a variety of services in the government (public) and commercial (civil) aviation sectors. The growth of this potential industry has not yet been realized due to the lack of a common understanding of what is required to safely operate UAS in the National Airspace System (NAS). To address this deficiency, NASA has established a project called UAS Integration in the NAS (UAS in the NAS), under the Integrated Systems Research Program (ISRP) of the Aeronautics Research Mission Directorate (ARMD). This project provides an opportunity to transition concepts, technology, algorithms, and knowledge to the Federal Aviation Administration (FAA) and other stakeholders to help them define the requirements, regulations, and issues for routine UAS access to the NAS. The safe, routine, and efficient integration of UAS into the NAS requires new radio frequency (RF) spectrum allocations and a new data communications system which is both secure and scalable with increasing UAS traffic without adversely impacting the Air Traffic Control (ATC) communication system. These data communications, referred to as Control and Non-Payload Communications (CNPC), whose purpose is to exchange information between the unmanned aircraft and the ground control station to ensure safe, reliable, and effective unmanned aircraft flight operation. A Communications Subproject within the UAS in the NAS Project has been established to address issues related to CNPC development, certification and fielding. The focus of the Communications Subproject is on validating and allocating new RF spectrum and data link communications to enable civil UAS integration into the NAS. The goal is to validate secure, robust data links within the allocated frequency spectrum for UAS. A vision, architectural concepts, and seed requirements for the future commercial UAS CNPC system have been developed by RTCA Special Committee 203 (SC-203) in the process

  1. The effect of sequence context on the activity of cytosine DNA glycosylases.

    PubMed

    Kimber, Scott T; Brown, Tom; Fox, Keith R

    2015-12-01

    We have prepared single (N204D) and double (N204D:L272A) mutants of human uracil DNA glycosylase (hUDG), generating two cytosine DNA glycosylases (hCDG and hCYDG). Both these enzymes are able to excise cytosine (but not 5-methylcytosine), when this base is part of a mismatched base pair. hCDG is more active than the equivalent E. coli enzyme (eCYDG) and also has some activity when the cytosine is paired with guanine, unlike eCYDG. hCDG also has some activity against single stranded DNA, while having poor activity towards an unnatural base pair that forces the cytosine into an extrahelical conformation (in contrast to eCYDG for which a bulky base enhances the enzyme's activity). We also examined how sequence context affects the activity of these enzymes, determining the effect of flanking base pairs on cleavage efficiency. An abasic site or a hexaethylene glycol linker placed opposite the target cytosine, also causes an increase in activity compared with an AC mismatch. Flanking an AC mismatch with GC base pairs resulted in a 100-fold decrease in excision activity relative to flanking AT base pairs and the 5'-flanking base pair had a greater effect on the rate of cleavage. However, this effect is not simply due to the stability of the flanking base pairs as adjacent GT mismatches also produce low cleavage efficiency. PMID:26463365

  2. U.S. Geological Survey Unmanned Aircraft Systems (UAS) Roadmap 2014

    USGS Publications Warehouse

    Cress, Jill J.; Hutt, Michael E.; Sloan, Jeff L.; Bauer, Mark A.; Feller, Mark R.; Goplen, Susan E.

    2015-01-01

    This Roadmap provides operational procedures and lessons learned from completed proof-of-concept UAS missions in areas such as wildlife management, resource monitoring, and public land inspections. This information provides not only an implementation framework but can also help increase the awareness by resource managers, scientists, and others of the ability of UAS technology to advance data quality, improve personnel safety, and reduce data acquisition costs.

  3. What can be learnt from the new UA4/2 data

    NASA Astrophysics Data System (ADS)

    Selyugin, O. V.

    1994-07-01

    A careful analysis of the new data of the UA4/2 collaboratiion reveals that these data give an essentially large value of the ϱ= {ReT(s,t) }/{Im(s,t) } that does not contradict the early UA4 experiment. There are grounds for thinking that this experiment reveals for the first time a real possibility of the existence of the spin-flip amplitude at superhigh energies in the range of small transfer momenta.

  4. Targeted massively parallel sequencing of angiosarcomas reveals frequent activation of the mitogen activated protein kinase pathway

    PubMed Central

    Murali, Rajmohan; Chandramohan, Raghu; Möller, Inga; Scholz, Simone L.; Berger, Michael; Huberman, Kety; Viale, Agnes; Pirun, Mono; Socci, Nicholas D.; Bouvier, Nancy; Bauer, Sebastian; Artl, Monika; Schilling, Bastian; Schimming, Tobias; Sucker, Antje; Schwindenhammer, Benjamin; Grabellus, Florian; Speicher, Michael R.; Schaller, Jörg; Hillen, Uwe; Schadendorf, Dirk; Mentzel, Thomas; Cheng, Donavan T.; Wiesner, Thomas; Griewank, Klaus G.

    2015-01-01

    Angiosarcomas are rare malignant mesenchymal tumors of endothelial differentiation. The clinical behavior is usually aggressive and the prognosis for patients with advanced disease is poor with no effective therapies. The genetic bases of these tumors have been partially revealed in recent studies reporting genetic alterations such as amplifications of MYC (primarily in radiation-associated angiosarcomas), inactivating mutations in PTPRB and R707Q hotspot mutations of PLCG1. Here, we performed a comprehensive genomic analysis of 34 angiosarcomas using a clinically-approved, hybridization-based targeted next-generation sequencing assay for 341 well-established oncogenes and tumor suppressor genes. Over half of the angiosarcomas (n = 18, 53%) harbored genetic alterations affecting the MAPK pathway, involving mutations in KRAS, HRAS, NRAS, BRAF, MAPK1 and NF1, or amplifications in MAPK1/CRKL, CRAF or BRAF. The most frequently detected genetic aberrations were mutations in TP53 in 12 tumors (35%) and losses of CDKN2A in 9 tumors (26%). MYC amplifications were generally mutually exclusive of TP53 alterations and CDKN2A loss and were identified in 8 tumors (24%), most of which (n = 7, 88%) arose post-irradiation. Previously reported mutations in PTPRB (n = 10, 29%) and one (3%) PLCG1 R707Q mutation were also identified. Our results demonstrate that angiosarcomas are a genetically heterogeneous group of tumors, harboring a wide range of genetic alterations. The high frequency of genetic events affecting the MAPK pathway suggests that targeted therapies inhibiting MAPK signaling may be promising therapeutic avenues in patients with advanced angiosarcomas. PMID:26440310

  5. Complete amino acid sequence of globin chains and biological activity of fragmented crocodile hemoglobin (Crocodylus siamensis).

    PubMed

    Srihongthong, Saowaluck; Pakdeesuwan, Anawat; Daduang, Sakda; Araki, Tomohiro; Dhiravisit, Apisak; Thammasirirak, Sompong

    2012-08-01

    Hemoglobin, α-chain, β-chain and fragmented hemoglobin of Crocodylus siamensis demonstrated both antibacterial and antioxidant activities. Antibacterial and antioxidant properties of the hemoglobin did not depend on the heme structure but could result from the compositions of amino acid residues and structures present in their primary structure. Furthermore, thirteen purified active peptides were obtained by RP-HPLC analyses, corresponding to fragments in the α-globin chain and the β-globin chain which are mostly located at the N-terminal and C-terminal parts. These active peptides operate on the bacterial cell membrane. The globin chains of Crocodylus siamensis showed similar amino acids to the sequences of Crocodylus niloticus. The novel amino acid substitutions of α-chain and β-chain are not associated with the heme binding site or the bicarbonate ion binding site, but could be important through their interactions with membranes of bacteria. PMID:22648692

  6. Deployable reconnaissance from a VTOL UAS in urban environments

    NASA Astrophysics Data System (ADS)

    Barnett, Shane; Bird, John; Culhane, Andrew; Sharkasi, Adam; Reinholtz, Charles

    2007-04-01

    Reconnaissance collection in unknown or hostile environments can be a dangerous and life threatening task. To reduce this risk, the Unmanned Systems Group at Virginia Tech has produced a fully autonomous reconnaissance system able to provide live video reconnaissance from outside and inside unknown structures. This system consists of an autonomous helicopter which launches a small reconnaissance pod inside a building and an operator control unit (OCU) on a ground station. The helicopter is a modified Bergen Industrial Twin using a Rotomotion flight controller and can fly missions of up to one half hour. The mission planning OCU can control the helicopter remotely through teleoperation or fully autonomously by GPS waypoints. A forward facing camera and template matching aid in navigation by identifying the target building. Once the target structure is identified, vision algorithms will center the UAS adjacent to open windows or doorways. Tunable parameters in the vision algorithm account for varying launch distances and opening sizes. Launch of the reconnaissance pod may be initiated remotely through a human in the loop or autonomously. Compressed air propels the half pound stationary pod or the larger mobile pod into the open portals. Once inside the building, the reconnaissance pod will then transmit live video back to the helicopter. The helicopter acts as a repeater node for increased video range and simplification of communication back to the ground station.

  7. Enhancement Strategies for Frame-To Uas Stereo Visual Odometry

    NASA Astrophysics Data System (ADS)

    Kersten, J.; Rodehorst, V.

    2016-06-01

    Autonomous navigation of indoor unmanned aircraft systems (UAS) requires accurate pose estimations usually obtained from indirect measurements. Navigation based on inertial measurement units (IMU) is known to be affected by high drift rates. The incorporation of cameras provides complementary information due to the different underlying measurement principle. The scale ambiguity problem for monocular cameras is avoided when a light-weight stereo camera setup is used. However, also frame-to-frame stereo visual odometry (VO) approaches are known to accumulate pose estimation errors over time. Several valuable real-time capable techniques for outlier detection and drift reduction in frame-to-frame VO, for example robust relative orientation estimation using random sample consensus (RANSAC) and bundle adjustment, are available. This study addresses the problem of choosing appropriate VO components. We propose a frame-to-frame stereo VO method based on carefully selected components and parameters. This method is evaluated regarding the impact and value of different outlier detection and drift-reduction strategies, for example keyframe selection and sparse bundle adjustment (SBA), using reference benchmark data as well as own real stereo data. The experimental results demonstrate that our VO method is able to estimate quite accurate trajectories. Feature bucketing and keyframe selection are simple but effective strategies which further improve the VO results. Furthermore, introducing the stereo baseline constraint in pose graph optimization (PGO) leads to significant improvements.

  8. Shuttle cloning and nucleotide sequences of Helicobacter pylori genes responsible for urease activity.

    PubMed

    Labigne, A; Cussac, V; Courcoux, P

    1991-03-01

    Production of a potent urease has been described as a trait common to all Helicobacter pylori so far isolated from humans with gastritis as well as peptic ulceration. The detection of urease activity from genes cloned from H. pylori was made possible by use of a shuttle cosmid vector, allowing replication and movement of cloned DNA sequences in either Escherichia coli or Campylobacter jejuni. With this approach, we cloned a 44-kb portion of H. pylori chromosomal DNA which did not lead to urease activity when introduced into E. coli but permitted, although temporarily, biosynthesis of the urease when transferred by conjugation to C. jejuni. The recombinant cosmid (pILL585) expressing the urease phenotype was mapped and used to subclone an 8.1-kb fragment (pILL590) able to confer the same property to C. jejuni recipient strains. By a series of deletions and subclonings, the urease genes were localized to a 4.2-kb region of DNA and were sequenced by the dideoxy method. Four open reading frames were found, encoding polypeptides with predicted molecular weights of 26,500 (ureA), 61,600 (ureB), 49,200 (ureC), and 15,000 (ureD). The predicted UreA and UreB polypeptides correspond to the two structural subunits of the urease enzyme; they exhibit a high degree of homology with the three structural subunits of Proteus mirabilis (56% exact matches) as well as with the unique structural subunit of jack bean urease (55.5% exact matches). Although the UreD-predicted polypeptide has domains relevant to transmembrane proteins, no precise role could be attributed to this polypeptide or to the UreC polypeptide, which both mapped to a DNA sequence shown to be required to confer urease activity to a C. jejuni recipient strain. PMID:2001995

  9. Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project

    PubMed Central

    Konkel, Miriam K.; Walker, Jerilyn A.; Hotard, Ashley B.; Ranck, Megan C.; Fontenot, Catherine C.; Storer, Jessica; Stewart, Chip; Marth, Gabor T.; Batzer, Mark A.

    2015-01-01

    The goal of the 1000 Genomes Consortium is to characterize human genome structural variation (SV), including forms of copy number variations such as deletions, duplications, and insertions. Mobile element insertions, particularly Alu elements, are major contributors to genomic SV among humans. During the pilot phase of the project we experimentally validated 645 (611 intergenic and 34 exon targeted) polymorphic “young” Alu insertion events, absent from the human reference genome. Here, we report high resolution sequencing of 343 (322 unique) recent Alu insertion events, along with their respective target site duplications, precise genomic breakpoint coordinates, subfamily assignment, percent divergence, and estimated A-rich tail lengths. All the sequenced Alu loci were derived from the AluY lineage with no evidence of retrotransposition activity involving older Alu families (e.g., AluJ and AluS). AluYa5 is currently the most active Alu subfamily in the human lineage, followed by AluYb8, and many others including three newly identified subfamilies we have termed AluYb7a3, AluYb8b1, and AluYa4a1. This report provides the structural details of 322 unique Alu variants from individual human genomes collectively adding about 100 kb of genomic variation. Many Alu subfamilies are currently active in human populations, including a surprising level of AluY retrotransposition. Human Alu subfamilies exhibit continuous evolution with potential drivers sprouting new Alu lineages. PMID:26319576

  10. Computational screening for active compounds targeting protein sequences: methodology and experimental validation.

    PubMed

    Wang, Fei; Liu, Dongxiang; Wang, Heyao; Luo, Cheng; Zheng, Mingyue; Liu, Hong; Zhu, Weiliang; Luo, Xiaomin; Zhang, Jian; Jiang, Hualiang

    2011-11-28

    The three-dimensional (3D) structures of most protein targets have not been determined so far, with many of them not even having a known ligand, a truly general method to predict ligand-protein interactions in the absence of three-dimensional information would be of great potential value in drug discovery. Using the support vector machine (SVM) approach, we constructed a model for predicting ligand-protein interaction based only on the primary sequence of proteins and the structural features of small molecules. The model, trained by using 15,000 ligand-protein interactions between 626 proteins and over 10,000 active compounds, was successfully used in discovering nine novel active compounds for four pharmacologically important targets (i.e., GPR40, SIRT1, p38, and GSK-3β). To our knowledge, this is the first example of a successful sequence-based virtual screening campaign, demonstrating that our approach has the potential to discover, with a single model, active ligands for any protein. PMID:21955088

  11. Draft Genome Sequence of Delftia tsuruhatensis MTQ3, a Strain of Plant Growth-Promoting Rhizobacterium with Antimicrobial Activity.

    PubMed

    Hou, Qihui; Wang, Chengqiang; Guo, Haimeng; Xia, Zhilin; Ye, Jiangping; Liu, Kai; Yang, Yanan; Hou, Xiaoyang; Liu, Hu; Wang, Jun; Du, Binghai; Ding, Yanqin

    2015-01-01

    Delftia tsuruhatensis MTQ3 is a plant growth-promoting rhizobacterium (PGPR) isolated from tobacco rhizosphere. Here, we report the draft genome sequence of D. tsuruhatensis MTQ3. Several functional genes related to antimicrobial activity and environment adaption have been found in the genome. This is the first genome sequence of D. tsuruhatensis related to PGPR. PMID:26251486

  12. The influence of nucleotide sequence and temperature on the activity of thermostable DNA polymerases.

    PubMed

    Montgomery, Jesse L; Rejali, Nick; Wittwer, Carl T

    2014-05-01

    Extension rates of a thermostable, deletion-mutant polymerase were measured from 50°C to 90°C using a fluorescence activity assay adapted for real-time PCR instruments. Substrates with a common hairpin (6-base loop and a 14-bp stem) were synthesized with different 10-base homopolymer tails. Rates for A, C, G, T, and 7-deaza-G incorporation at 75°C were 81, 150, 214, 46, and 120 seconds(-1). Rates for U were half as fast as T and did not increase with increasing concentration. Hairpin substrates with 25-base tails from 0% to 100% GC content had maximal extension rates near 60% GC and were predicted from the template sequence and mononucleotide incorporation rates to within 30% for most sequences. Addition of dimethyl sulfoxide at 7.5% increased rates to within 1% to 17% of prediction for templates with 40% to 90% GC. When secondary structure was designed into the template region, extension rates decreased. Oligonucleotide probes reduced extension rates by 65% (5'-3' exo-) and 70% (5'-3' exo+). When using a separate primer and a linear template to form a polymerase substrate, rates were dependent on both the primer melting temperature (Tm) and the annealing/extension temperature. Maximum rates were observed from Tm to Tm - 5°C with little extension by Tm + 5°C. Defining the influence of sequence and temperature on polymerase extension will enable more rapid and efficient PCR. PMID:24607271

  13. Discovering active motifs in sets of related protein sequences and using them for classification.

    PubMed Central

    Wang, J T; Marr, T G; Shasha, D; Shapiro, B A; Chirn, G W

    1994-01-01

    We describe a method for discovering active motifs in a set of related protein sequences. The method is an automatic two step process: (1) find candidate motifs in a small sample of the sequences; (2) test whether these motifs are approximately present in all the sequences. To reduce the running time, we develop two optimization heuristics based on statistical estimation and pattern matching techniques. Experimental results obtained by running these algorithms on generated data and functionally related proteins demonstrate the good performance of the presented method compared with visual method of O'Farrell and Leopold. By combining the discovered motifs with an existing fingerprint technique, we develop a protein classifier. When we apply the classifier to the 698 groups of related proteins in the PROSITE catalog, it gives information that is complementary to the BLOCKS protein classifier of Henikoff and Henikoff. Thus, using our classifier in conjunction with theirs, one can obtain high confidence classifications (if BLOCKS and our classifier agree) or suggest a new hypothesis (if the two disagree). PMID:8052532

  14. De Novo Sequencing of Heparan Sulfate Oligosaccharides by Electron-Activated Dissociation

    PubMed Central

    Huang, Yu; Yu, Xiang; Mao, Yang; Costello, Catherine E.; Zaia, Joseph; Lin, Cheng

    2014-01-01

    Structural characterization of highly sulfated glycosaminoglycans (GAGs) by collisionally activated dissociation (CAD) is challenging because of the extensive sulfate losses mediated by free protons. While removal of the free protons may be achieved through the use of derivatization, metal cation adducts, and/or electrospray supercharging reagents, these steps add complexity to the experimental workflow. It is therefore desirable to develop an analytical approach for GAG sequencing that does not require derivatization or addition of reagents to the electrospray solution. Electron detachment dissociation (EDD) can produce extensive and informative fragmentation for GAGs without the need to remove free protons from the precursor ions. However, EDD is an inefficient process, often requiring consumption of large sample quantities (typically several micrograms), particularly for highly sulfated GAG ions. Here, we report that with improved instrumentation, optimization of the ionization and ion transfer parameters, and enhanced EDD efficiency, it is possible to generate highly informative EDD spectra of highly sulfated GAGs on the liquid chromatography (LC) time-scale, with consumption of only a few nanograms of sample. We further show that negative electron transfer dissociation (NETD) is an even more effective fragmentation technique for GAG sequencing, producing fewer sulfate losses while consuming smaller amount of samples. Finally, a simple algorithm was developed for de novo HS sequencing based on their high resolution tandem mass spectra. These results demonstrate the potential of EDD and NETD as sensitive analytical tools for detailed, high-throughput, de novo structural analyses of highly sulfated GAGs. PMID:24224699

  15. Spatial unmixing for environmental impact monitoring of mining using UAS and WV-2

    NASA Astrophysics Data System (ADS)

    Delalieux, S.; Livens, S.; Goossens, M.; Reusen, I.; Tote, C.

    2012-04-01

    The three principal activities of the mineral resources mining industry - mining, mineral processing and metallurgical extraction - all produce waste. The environmental impact of these activities depends on many factors, in particular, the type of mining and the size of the operation. The effects of the mining (extraction) stage tend to be mainly local, associated with surface disturbance, the production of large amounts of solid waste material, and the spread of chemically reactive particulate matter to the atmosphere and hydrosphere. Many studies have shown the potential of remote sensing for environmental impact monitoring, e.g., [1]. However, its applicability has been limited due to the inherent spatial-spectral and temporal trade-off of most sensors. More recently, miniaturization of sensors makes it possible to capture color images from unmanned aerial systems (UAS) with a very high spatial resolution. In addition, the UAS can be deployed in a very flexible manner, allowing high temporal resolution imaging. More detailed spectral information is available from multispectral images, albeit at lower spatial resolution. Combining both types of images using image fusion can help to overcome the spatial-spectral trade-off and provide a new tool for more detailed monitoring of environmental impacts. Within the framework of the ImpactMin project, funded by the Framework Programme 7 of the European Commission, the objective of this study is to implement and apply the spatial unmixing algorithm, as proposed by [2], on images of the 'Vihovici Coal Mine' area, located in the Mostar Valley, Bosnia and Herzegovina. A WorldView2 (WV2) satellite image will be employed, which provides 8-band multispectral data at a spatial resolution of 2m. High spatial resolution images, obtained by a SmartPlanes UAS, will provide RGB data with 0.05m spatial resolution. The spatial unmixing technique is based on the idea that a linear mixing model can be used to perform the downscaling of

  16. Fine mapping of genome activation in bovine embryos by RNA sequencing

    PubMed Central

    Graf, Alexander; Krebs, Stefan; Zakhartchenko, Valeri; Schwalb, Björn; Blum, Helmut; Wolf, Eckhard

    2014-01-01

    During maternal-to-embryonic transition control of embryonic development gradually switches from maternal RNAs and proteins stored in the oocyte to gene products generated after embryonic genome activation (EGA). Detailed insight into the onset of embryonic transcription is obscured by the presence of maternal transcripts. Using the bovine model system, we established by RNA sequencing a comprehensive catalogue of transcripts in germinal vesicle and metaphase II oocytes, and in embryos at the four-cell, eight-cell, 16-cell, and blastocyst stages. These were produced by in vitro fertilization of Bos taurus taurus oocytes with sperm from a Bos taurus indicus bull to facilitate parent-specific transcriptome analysis. Transcripts from 12.4 to 13.7 × 103 different genes were detected in the various developmental stages. EGA was analyzed by (i) detection of embryonic transcripts, which are not present in oocytes; (ii) detection of transcripts from the paternal allele; and (iii) detection of primary transcripts with intronic sequences. These strategies revealed (i) 220, (ii) 937, and (iii) 6,848 genes to be activated from the four-cell to the blastocyst stage. The largest proportion of gene activation [i.e., (i) 59%, (ii) 42%, and (iii) 58%] was found in eight-cell embryos, indicating major EGA at this stage. Gene ontology analysis of genes activated at the four-cell stage identified categories related to RNA processing, translation, and transport, consistent with preparation for major EGA. Our study provides the largest transcriptome data set of bovine oocyte maturation and early embryonic development and detailed insight into the timing of embryonic activation of specific genes. PMID:24591639

  17. UAS-NAS Integrated Human in the Loop: Test Environment Report

    NASA Technical Reports Server (NTRS)

    Murphy, Jim; Otto, Neil; Jovic, Srba

    2015-01-01

    The desire and ability to fly Unmanned Aircraft Systems (UAS) in the National Airspace System (NAS) is of increasing urgency. The application of unmanned aircraft to perform national security, defense, scientific, and emergency management are driving the critical need for less restrictive access by UAS to the NAS. UAS represent a new capability that will provide a variety of services in the government (public) and commercial (civil) aviation sectors. The growth of this potential industry has not yet been realized due to the lack of a common understanding of what is required to safely operate UAS in the NAS. NASA's UAS Integration in the NAS Project is conducting research in the areas of Separation Assurance/Sense and Avoid Interoperability (SSI), Human Systems Integration (HSI), and Communication to support reducing the barriers of UAS access to the NAS. This research was broken into two research themes namely, UAS Integration and Test Infrastructure. UAS Integration focuses on airspace integration procedures and performance standards to enable UAS integration in the air transportation system, covering Sense and Avoid (SAA) performance standards, command and control performance standards, and human systems integration. The focus of the Test Infrastructure theme was to enable development and validation of airspace integration procedures and performance standards, including the execution of integrated test and evaluation. In support of the integrated test and evaluation efforts, the Project developed an adaptable, scalable, and schedulable relevant test environment incorporating live, virtual, and constructive elements capable of validating concepts and technologies for unmanned aircraft systems to safely operate in the NAS. To accomplish this task, the Project planned to conduct three integrated events: a Human-in-the-Loop simulation and two Flight Test series that integrated key concepts, technologies and/or procedures in a relevant air traffic environment. Each of

  18. PCR-Activated Cell Sorting for Cultivation-Free Enrichment and Sequencing of Rare Microbes

    PubMed Central

    Lim, Shaun W.; Tran, Tuan M.; Abate, Adam R.

    2015-01-01

    Microbial systems often exhibit staggering diversity, making the study of rare, interesting species challenging. For example, metagenomic analyses of mixed-cell populations are often dominated by the sequences of the most abundant organisms, while those of rare microbes are detected only at low levels, if at all. To overcome this, selective cultivation or fluorescence-activated cell sorting (FACS) can be used to enrich for the target species prior to sequence analysis; however, since most microbes cannot be grown in the lab, cultivation strategies often fail, while cell sorting requires techniques to uniquely label the cell type of interest, which is often not possible with uncultivable microbes. Here, we introduce a culture-independent strategy for sorting microbial cells based on genomic content, which we term PCR-activated cell sorting (PACS). This technology, which utilizes the power of droplet-based microfluidics, is similar to FACS in that it uses a fluorescent signal to uniquely identify and sort target species. However, PACS differs importantly from FACS in that the signal is generated by performing PCR assays on the cells in microfluidic droplets, allowing target cells to be identified with high specificity with suitable design of PCR primers and TaqMan probes. The PACS assay is general, requires minimal optimization and, unlike antibody methods, can be developed without access to microbial antigens. Compared to non-specific methods in which cells are sorted based on size, granularity, or the ability to take up dye, PACS enables genetic sequence-specific sorting and recovery of the cell genomes. In addition to sorting microbes, PACS can be applied to eukaryotic cells, viruses, and naked nucleic acids. PMID:25629401

  19. Phosphorothioate primers improve the amplification of DNA sequences by DNA polymerases with proofreading activity.

    PubMed Central

    Skerra, A

    1992-01-01

    Two thermostable DNA polymerases with proofreading activity--Vent DNA polymerase and Pfu DNA polymerase--have attracted recent attention, mainly because of their enhanced fidelities during amplification of DNA sequences by the polymerase chain reaction. A severe disadvantage for their practical application, however, results from the observation that due to their 3' to 5' exonuclease activities these enzymes degrade the oligodeoxynucleotides serving as primers for the DNA synthesis. It is demonstrated that this exonucleolytic attack on the primer molecules can be efficiently prevented by the introduction of single phosphorothioate bonds at their 3' termini. This strategy, which can be easily accomplished using routine DNA synthesis methodology, may open the way to a widespread use of these novel enzymes in the polymerase chain reaction. Images PMID:1641322

  20. Segmentation and tracking in echocardiographic sequences: active contours guided by optical flow estimates

    NASA Technical Reports Server (NTRS)

    Mikic, I.; Krucinski, S.; Thomas, J. D.

    1998-01-01

    This paper presents a method for segmentation and tracking of cardiac structures in ultrasound image sequences. The developed algorithm is based on the active contour framework. This approach requires initial placement of the contour close to the desired position in the image, usually an object outline. Best contour shape and position are then calculated, assuming that at this configuration a global energy function, associated with a contour, attains its minimum. Active contours can be used for tracking by selecting a solution from a previous frame as an initial position in a present frame. Such an approach, however, fails for large displacements of the object of interest. This paper presents a technique that incorporates the information on pixel velocities (optical flow) into the estimate of initial contour to enable tracking of fast-moving objects. The algorithm was tested on several ultrasound image sequences, each covering one complete cardiac cycle. The contour successfully tracked boundaries of mitral valve leaflets, aortic root and endocardial borders of the left ventricle. The algorithm-generated outlines were compared against manual tracings by expert physicians. The automated method resulted in contours that were within the boundaries of intraobserver variability.

  1. Simultaneous Pathway Activity Inference and Gene Expression Analysis Using RNA Sequencing.

    PubMed

    O'Connell, Daniel J; Kolde, Raivo; Sooknah, Matthew; Graham, Daniel B; Sundberg, Thomas B; Latorre, Isabel J; Mikkelsen, Tarjei S; Xavier, Ramnik J

    2016-05-25

    Reporter gene assays are a venerable tool for studying signaling pathways, but they lack the throughput and complexity necessary to contribute to a systems-level understanding of endogenous signaling networks. We present a parallel reporter assay, transcription factor activity sequencing (TF-seq), built on synthetic DNA enhancer elements, which enables parallel measurements in primary cells of the transcriptome and transcription factor activity from more than 40 signaling pathways. Using TF-seq in Myd88(-/-) macrophages, we captured dynamic pathway activity changes underpinning the global transcriptional changes of the innate immune response. We also applied TF-seq to investigate small molecule mechanisms of action and find a role for NF-κB activation and coordination of the STAT1 response in the macrophage reaction to the anti-inflammatory natural product halofuginone. Simultaneous TF-seq and global gene expression profiling represent an integrative approach for gaining mechanistic insight into pathway activity and transcriptional changes that result from genetic and small molecule perturbations. PMID:27211859

  2. Capturing and modelling high-complex alluvial topography with UAS-borne laser scanning

    NASA Astrophysics Data System (ADS)

    Mandlburger, Gottfried; Wieser, Martin; Pfennigbauer, Martin

    2015-04-01

    Due to fluvial activity alluvial forests are zones of highest complexity and relief energy. Alluvial forests are dominated by new and pristine channels in consequence of current and historic flood events. Apart from topographic features, the vegetation structure is typically very complex featuring, both, dense under story as well as high trees. Furthermore, deadwood and debris carried from upstream during periods of high discharge within the river channel are deposited in these areas. Therefore, precise modelling of the micro relief of alluvial forests using standard tools like Airborne Laser Scanning (ALS) is hardly feasible. Terrestrial Laser Scanning (TLS), in turn, is very time consuming for capturing larger areas as many scan positions are necessary for obtaining complete coverage due to view occlusions in the forest. In the recent past, the technological development of Unmanned Arial Systems (UAS) has reached a level that light-weight survey-grade laser scanners can be operated from these platforms. For capturing alluvial topography this could bridge the gap between ALS and TLS in terms of providing a very detailed description of the topography and the vegetation structure due to the achievable very high point density of >100 points per m2. In our contribution we demonstrate the feasibility to apply UAS-borne laser scanning for capturing and modelling the complex topography of the study area Neubacher Au, an alluvial forest at the pre-alpine River Pielach (Lower Austria). The area was captured with Riegl's VUX-1 compact time-of-flight laser scanner mounted on a RiCopter (X-8 array octocopter). The scanner features an effective scan rate of 500 kHz and was flown in 50-100 m above ground. At this flying height the laser footprint is 25-50 mm allowing mapping of very small surface details. Furthermore, online waveform processing of the backscattered laser energy enables the retrieval of multiple targets for single laser shots resulting in a dense point cloud of

  3. Development of an Unmanned Aerial System (UAS) for Scaling Terrestrial Ecosystem Traits

    NASA Astrophysics Data System (ADS)

    Meng, R.; McMahon, A. M.; Serbin, S.; Rogers, A.

    2015-12-01

    The next generation of Ecosystem and Earth System Models (EESMs) will require detailed information on ecosystem structure and function, including properties of vegetation related to carbon (C), water, and energy cycling, in order to project the future state of ecosystems. High spatial-temporal resolution measurements of terrestrial ecosystem are also important for EESMs, because they can provide critical inputs and benchmark datasets for evaluation of EESMs simulations across scales. The recent development of high-quality, low-altitude remote sensing platforms or small UAS (< 25 kg) enables measurements of terrestrial ecosystems at unprecedented temporal and spatial scales. Specifically, these new platforms can provide detailed information on patterns and processes of terrestrial ecosystems at a critical intermediate scale between point measurements and suborbital and satellite platforms. Given their potential for sub-decimeter spatial resolution, improved mission safety, high revisit frequency, and reduced operation cost, these platforms are of particular interest in the development of ecological scaling algorithms to parameterize and benchmark EESMs, particularly over complex and remote terrain. Our group is developing a small UAS platform and integrated sensor package focused on measurement needs for scaling and informing ecosystem modeling activities, as well as scaling and mapping plant functional traits. To do this we are developing an integrated software workflow and hardware package using off-the-shelf instrumentation including a high-resolution digital camera for Structure from Motion, spectroradiometer, and a thermal infrared camera. Our workflow includes platform design, measurement, image processing, data management, and information extraction. The fusion of 3D structure information, thermal-infrared imagery, and spectroscopic measurements, will provide a foundation for the development of ecological scaling and mapping algorithms. Our initial focus is

  4. Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project - Gen-4 and Gen-5 Radio Plans

    NASA Technical Reports Server (NTRS)

    Griner, James H.

    2014-01-01

    NASA's UAS Integration in the NAS project, has partnered with Rockwell Collins to develop a concept Control and Non-Payload Communication (CNPC) system prototype radio, operating on recently allocated UAS frequency spectrum bands. This prototype radio is being used to validate initial proposed performance requirements for UAS control communications. This presentation will give an overview of the current plans for the prototype radio development.

  5. Mission Adaptive Uas Capabilities for Earth Science and Resource Assessment

    NASA Astrophysics Data System (ADS)

    Dunagan, S.; Fladeland, M.; Ippolito, C.; Knudson, M.; Young, Z.

    2015-04-01

    Unmanned aircraft systems (UAS) are important assets for accessing high risk airspace and incorporate technologies for sensor coordination, onboard processing, tele-communication, unconventional flight control, and ground based monitoring and optimization. These capabilities permit adaptive mission management in the face of complex requirements and chaotic external influences. NASA Ames Research Center has led a number of Earth science remote sensing missions directed at the assessment of natural resources and here we describe two resource mapping problems having mission characteristics requiring a mission adaptive capability extensible to other resource assessment challenges. One example involves the requirement for careful control over solar angle geometry for passive reflectance measurements. This constraint exists when collecting imaging spectroscopy data over vegetation for time series analysis or for the coastal ocean where solar angle combines with sea state to produce surface glint that can obscure the signal. Furthermore, the primary flight control imperative to minimize tracking error should compromise with the requirement to minimize aircraft motion artifacts in the spatial measurement distribution. A second example involves mapping of natural resources in the Earth's crust using precision magnetometry. In this case the vehicle flight path must be oriented to optimize magnetic flux gradients over a spatial domain having continually emerging features, while optimizing the efficiency of the spatial mapping task. These requirements were highlighted in recent Earth Science missions including the OCEANIA mission directed at improving the capability for spectral and radiometric reflectance measurements in the coastal ocean, and the Surprise Valley Mission directed at mapping sub-surface mineral composition and faults, using high-sensitivity magnetometry. This paper reports the development of specific aircraft control approaches to incorporate the unusual and

  6. Metagenomic analyses reveal phylogenetic diversity of carboxypeptidase gene sequences in activated sludge of a wastewater treatment plant in Shanghai, China.

    PubMed

    Jin, Hao; Li, Bailin; Peng, Xu; Chen, Lanming

    2014-01-01

    Activated sludge of wastewater treatment plants carries a diverse microflora. However, up to 80-90 % of microorganisms in activated sludge cannot be cultured by current laboratory techniques, leaving an enzyme reservoir largely unexplored. In this study, we investigated carboxypeptidase diversity in activated sludge of a wastewater treatment plant in Shanghai, China, by a culture-independent metagenomic approach. Three sets of consensus degenerate hybrid oligonucleotide primers (CODEHOPs) targeting conserved domains of public carboxypeptidases have been designed to amplify carboxypeptidase gene sequences in the metagenomic DNA of activated sludge by PCR. The desired amplicons were evaluated by carboxypeptidase sequence clone libraries and phylogenetic analyses. We uncovered a significant diversity of carboxypeptidases present in the activated sludge. Deduced carboxypeptidase amino acid sequences (127-208 amino acids) were classified into three distinct clusters, α, β, and γ. Sequences belonging to clusters α and β shared 58-97 % identity to known carboxypeptidase sequences from diverse species, whereas sequences in the cluster γ were remarkably less related to public carboxypeptidase homologous in the GenBank database, strongly suggesting that novel carboxypeptidase families or microbial niches exist in the activated sludge. We also observed numerous carboxypeptidase sequences that were much closer to those from representative strains present in industrial and sewage treatment and bioremediation. Thermostable and halotolerant carboxypeptidase sequences were also detected in clusters α and β. Coexistence of various carboxypeptidases is evidence of a diverse microflora in the activated sludge, a feature suggesting a valuable gene resource to be further explored for biotechnology application. PMID:24860282

  7. Elucidation of peptide sequence effects that control the activity, size, and function of nanoparticles

    NASA Astrophysics Data System (ADS)

    Coppage, Ryan

    Bio-inspired nanoparticle catalysis offers the opportunity to improve on current catalytic standards with respect to turnover efficiency, organic solvent use, and thermal activation. Unfortunately, projected energy demands will soon outweigh our fuel supplies. The task of creating multifunctional catalysts that both lower thermal activation and possess a number of functions in aqueous conditions is daunting. Similar to these needs, nature has evolved to create a wide range of highly specialized catalytic processes, which incorporate inorganic materials, take place in ambient temperatures, and in an aqueous environment. These specialized biological systems provide inspiration, but are not applicable to current needs. Exploitation of these biotic-abiotic systems could allow for green, multifunctional catalysts. In the resulting works, a peptide sequence has been isolated via phage display with affinity for Pd surfaces, that forms stable, peptide-capped nanoparticles. Substitution of residues results in the tuning of both nanocatalyst activity and nanoparticle size, such that a peptide surface-controlling effect can be noted. These characteristics can be exploited to ultimately understand the binding interactions among bio-inorganic interfaces, such that a rational design of biomolecules can be realized for the synthesis of highly active, green, multifunctional nanomaterials.

  8. Plasma Membrane Intrinsic Proteins from Maize Cluster in Two Sequence Subgroups with Differential Aquaporin Activity1

    PubMed Central

    Chaumont, François; Barrieu, François; Jung, Rudolf; Chrispeels, Maarten J.

    2000-01-01

    The transport of water through membranes is regulated in part by aquaporins or water channel proteins. These proteins are members of the larger family of major intrinsic proteins (MIPs). Plant aquaporins are categorized as either tonoplast intrinsic proteins (TIPs) or plasma membrane intrinsic proteins (PIPs). Sequence analysis shows that PIPs form several subclasses. We report on the characterization of three maize (Zea mays) PIPs belonging to the PIP1 and PIP2 subfamilies (ZmPIP1a, ZmPIP1b, and ZmPIP2a). The ZmPIP2a clone has normal aquaporin activity in Xenopus laevis oocytes. ZmPIP1a and ZmPIP1b have no activity, and a review of the literature shows that most PIP1 proteins identified in other plants have no or very low activity in oocytes. Arabidopsis PIP1 proteins are the only exception. Control experiments show that this lack of activity of maize PIP1 proteins is not caused by their failure to arrive at the plasma membrane of the oocytes. ZmPIP1b also does not appear to facilitate the transport of any of the small solutes tried (glycerol, choline, ethanol, urea, and amino acids). These results are discussed in relationship to the function and regulation of the PIP family of aquaporins. PMID:10759498

  9. Sequencing formally defined reactions for robotic activity: integrating RAPS and GAPPS

    NASA Astrophysics Data System (ADS)

    Slack, Marc G.

    1992-11-01

    Construction of robots which operate in unstructured environments has of late produced a number of approaches for transforming sensor readings into activity in the world. Most of these approaches provide no formal semantics for discussing the way in which the internal state of the robot maps to the desired state of the world. We have been investigating the use of the GAPPS programming language as a mechanism for defining robotic reactions. This work has resulted in the creation of reactive modules which mediate between discrete statements about world states to achieve or maintain and the required continuous activity. While relatively complex goals have been achieved with this approach, the syntax and semantics of the GAPPS language is inappropriate for complicated dynamically changing goals. As a result, we have begun investigating the use of Reactive Action Packages (RAPs) as a mechanism for sequencing the activation of GAPPS-based reactive skills. The motivation for using RAPs is twofold. First, the syntax and semantics of the RAPs language integrates smoothly with a traditional non-linear planning system, allowing the construction and execution of plans for increasingly complex tasks. Second, GAPPS-based reactions fulfill a missing component of a RAPs-based controller system, namely the transformation of discrete RAP primitives (e.g., (maintain grasp ?thing)) into continuous physical activity. This paper presents the approach we are taking and discusses some of the issues involved in integrating these two systems.

  10. In vivo labeling of zebrafish motor neurons using an mnx1 enhancer and Gal4/UAS.

    PubMed

    Zelenchuk, Taras A; Brusés, Juan L

    2011-07-01

    The zebrafish spinal cord primary motor neurons are commonly used as an experimental model to study the molecular mechanisms that regulate axonal pathfinding and neuromuscular junction formation, and for the modeling of human neurodegenerative disorders. This study characterized a 125-bp mnx1 enhancer to direct gene expression in spinal cord motor neurons. A promoter containing three copies of the 125-bp mnx1 enhancer was generated in a Tol2 vector and used to drive enhanced green fluorescent protein (EGFP) expression either directly or in combination with the Gal4/UAS transcriptional activation system. Both methods induced protein expression for up to 5 days after fertilization, allowing the observation of the dendritic tree and axonal arborization of single motor neurons within a somitic segment in fixed and live animals. The use of the 125-bp mnx1 promoter for transient transgenic expression or for the generation of stable transgenic fish lines will facilitate the study of motor neuron development and neurodegenerative processes. PMID:21538811

  11. Benchmark of the FLUKA model of crystal channeling against the UA9-H8 experiment

    NASA Astrophysics Data System (ADS)

    Schoofs, P.; Cerutti, F.; Ferrari, A.; Smirnov, G.

    2015-07-01

    Channeling in bent crystals is increasingly considered as an option for the collimation of high-energy particle beams. The installation of crystals in the LHC has taken place during this past year and aims at demonstrating the feasibility of crystal collimation and a possible cleaning efficiency improvement. The performance of CERN collimation insertions is evaluated with the Monte Carlo code FLUKA, which is capable to simulate energy deposition in collimators as well as beam loss monitor signals. A new model of crystal channeling was developed specifically so that similar simulations can be conducted in the case of crystal-assisted collimation. In this paper, most recent results of this model are brought forward in the framework of a joint activity inside the UA9 collaboration to benchmark the different simulation tools available. The performance of crystal STF 45, produced at INFN Ferrara, was measured at the H8 beamline at CERN in 2010 and serves as the basis to the comparison. Distributions of deflected particles are shown to be in very good agreement with experimental data. Calculated dechanneling lengths and crystal performance in the transition region between amorphous regime and volume reflection are also close to the measured ones.

  12. GAL4/UAS-WGA system as a powerful tool for tracing Drosophila transsynaptic neural pathways.

    PubMed

    Tabuchi, K; Sawamoto, K; Suzuki, E; Ozaki, K; Sone, M; Hama, C; Tanifuji-Morimoto, T; Yuasa, Y; Yoshihara, Y; Nose, A; Okano, H

    2000-01-01

    Visualization of specific transsynaptic neural pathways is an indispensable technique for understanding the relationship between structure and function in the nervous system. Here, we demonstrate the application of the wheat germ agglutinin (WGA) transgene technique for tracing transsynaptic neural pathways in Drosophila. The intracellular localization of WGA was examined by immunoelectron microscopy. WGA signals were detected in granule-like structures in both the outer photoreceptor cells expressing WGA and the second-order laminar neurons. Misexpression of tetanus toxin (TNT), which inactivates N-synaptobrevin, in the outer photoreceptor cells resulted in the elimination of on/off transients in electroretinogram (ERG) recordings and in a great reduction in WGA transfer into laminar neurons, suggesting that anterograde WGA transsynaptic transfer is dependent mainly on synaptic transmission. Retrograde WGA transfer was also detected upon its forced expression in muscle cells. WGA primarily expressed in muscle cells was taken up by motoneuron axons and transported to their cell bodies in the ventral nerve cord, suggesting that WGA can trace motoneuronal pathways in combination with the muscle-specific GAL4 driver. Thus, the GAL4/UAS-WGA system should facilitate the dissection of the Drosophila neural circuit formation and/or synaptic activity in various regions and at various developmental stages. PMID:10658189

  13. Neural activations during visual sequence learning leave a trace in post-training spontaneous EEG.

    PubMed

    Moisello, Clara; Meziane, Hadj Boumediene; Kelly, Simon; Perfetti, Bernardo; Kvint, Svetlana; Voutsinas, Nicholas; Blanco, Daniella; Quartarone, Angelo; Tononi, Giulio; Ghilardi, Maria Felice

    2013-01-01

    Recent EEG studies have shown that implicit learning involving specific cortical circuits results in an enduring local trace manifested as local changes in spectral power. Here we used a well characterized visual sequence learning task and high density-(hd-)EEG recording to determine whether also declarative learning leaves a post-task, local change in the resting state oscillatory activity in the areas involved in the learning process. Thus, we recorded hd-EEG in normal subjects before, during and after the acquisition of the order of a fixed spatial target sequence (VSEQ) and during the presentation of targets in random order (VRAN). We first determined the temporal evolution of spectral changes during VSEQ and compared it to VRAN. We found significant differences in the alpha and theta bands in three main scalp regions, a right occipito-parietal (ROP), an anterior-frontal (AFr), and a right frontal (RFr) area. The changes in frontal theta power during VSEQ were positively correlated with the learning rate. Further, post-learning EEG recordings during resting state revealed a significant increase in alpha power in ROP relative to a pre-learning baseline. We conclude that declarative learning is associated with alpha and theta changes in frontal and posterior regions that occur during the task, and with an increase of alpha power in the occipito-parietal region after the task. These post-task changes may represent a trace of learning and a hallmark of use-dependent plasticity. PMID:23799058

  14. FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences.

    PubMed

    Todd, R B; Andrianopoulos, A; Davis, M A; Hynes, M J

    1998-04-01

    The facB gene is required for acetate induction of acetamidase (amdS) and the acetate utilization enzymes acetyl-CoA synthase (facA), isocitrate lyase (acuD) and malate synthase (acuE) in Aspergillus nidulans. The facB gene encodes a transcriptional activator with a GAL4-type Zn(II)2Cys6 zinc binuclear cluster DNA-binding domain which is shown to be required for DNA binding. In vitro DNA-binding sites for FacB in the 5' regions of the amdS, facA, acuD and acuE genes have been identified. Mutations in amdS FacB DNA-binding sites affected expression of an amdS-lacZ reporter in vivo and altered the affinity of in vitro DNA binding. This study shows that the FacB Zn(II)2Cys6 cluster binds to dissimilar sites which show similarity in form but not sequence with DNA-binding sites of other Zn(II)2Cys6 proteins. Sequences with homology to FacB sites are found in the 5' regions of genes regulated by the closely related yeast Zn(II)2Cys6 protein CAT8. PMID:9524126

  15. Neural Activations during Visual Sequence Learning Leave a Trace in Post-Training Spontaneous EEG

    PubMed Central

    Moisello, Clara; Meziane, Hadj Boumediene; Kelly, Simon; Perfetti, Bernardo; Kvint, Svetlana; Voutsinas, Nicholas; Blanco, Daniella; Quartarone, Angelo; Tononi, Giulio; Ghilardi, Maria Felice

    2013-01-01

    Recent EEG studies have shown that implicit learning involving specific cortical circuits results in an enduring local trace manifested as local changes in spectral power. Here we used a well characterized visual sequence learning task and high density-(hd-)EEG recording to determine whether also declarative learning leaves a post-task, local change in the resting state oscillatory activity in the areas involved in the learning process. Thus, we recorded hd-EEG in normal subjects before, during and after the acquisition of the order of a fixed spatial target sequence (VSEQ) and during the presentation of targets in random order (VRAN). We first determined the temporal evolution of spectral changes during VSEQ and compared it to VRAN. We found significant differences in the alpha and theta bands in three main scalp regions, a right occipito-parietal (ROP), an anterior-frontal (AFr), and a right frontal (RFr) area. The changes in frontal theta power during VSEQ were positively correlated with the learning rate. Further, post-learning EEG recordings during resting state revealed a significant increase in alpha power in ROP relative to a pre-learning baseline. We conclude that declarative learning is associated with alpha and theta changes in frontal and posterior regions that occur during the task, and with an increase of alpha power in the occipito-parietal region after the task. These post-task changes may represent a trace of learning and a hallmark of use-dependent plasticity. PMID:23799058

  16. The amino acid sequences and activities of synergistic hemolysins from Staphylococcus cohnii.

    PubMed

    Mak, Pawel; Maszewska, Agnieszka; Rozalska, Malgorzata

    2008-10-01

    Staphylococcus cohnii ssp. cohnii and S. cohnii ssp. urealyticus are a coagulase-negative staphylococci considered for a long time as unable to cause infections. This situation changed recently and pathogenic strains of these bacteria were isolated from hospital environments, patients and medical staff. Most of the isolated strains were resistant to many antibiotics. The present work describes isolation and characterization of several synergistic peptide hemolysins produced by these bacteria and acting as virulence factors responsible for hemolytic and cytotoxic activities. Amino acid sequences of respective hemolysins from S. cohnii ssp. cohnii (named as H1C, H2C and H3C) and S. cohnii ssp. urealyticus (H1U, H2U and H3U) were identical. Peptides H1 and H3 possessed significant amino acid homology to three synergistic hemolysins secreted by Staphylococcus lugdunensis and to putative antibacterial peptide produced by Staphylococcus saprophyticus ssp. saprophyticus. On the other hand, hemolysin H2 had a unique sequence. All isolated peptides lysed red cells from different mammalian species and exerted a cytotoxic effect on human fibroblasts. PMID:18752624

  17. Analysis of UAS DAA Alerting in Fast-Time Simulations without DAA Mitigation

    NASA Technical Reports Server (NTRS)

    Thipphavong, David P.; Santiago, Confesor; Isaacson, Douglas R.; Lee, Seung Man; Park, Chunki; Refai, Mohamad Said; Snow, James

    2015-01-01

    Realization of the expected proliferation of Unmanned Aircraft System (UAS) operations in the National Airspace System (NAS) depends on the development and validation of performance standards for UAS Detect and Avoid (DAA) Systems. The RTCA Special Committee 228 is charged with leading the development of draft Minimum Operational Performance Standards (MOPS) for UAS DAA Systems. NASA, as a participating member of RTCA SC-228 is committed to supporting the development and validation of draft requirements for DAA alerting system performance. A recent study conducted using NASA's ACES (Airspace Concept Evaluation System) simulation capability begins to address questions surrounding the development of draft MOPS for DAA alerting systems. ACES simulations were conducted to study the performance of alerting systems proposed by the SC-228 DAA Alerting sub-group. Analysis included but was not limited to: 1) correct alert (and timeliness), 2) false alert (and severity and duration), 3) missed alert, and 4) probability of an alert type at the time of loss of well clear. The performance of DAA alerting systems when using intent vs. dead-reckoning for UAS ownship trajectories was also compared. The results will be used by SC-228 to inform decisions about the surveillance standards of UAS DAA systems and future requirements development and validation efforts.

  18. Definition and test of the electromagnetic immunity of UAS for first responders

    NASA Astrophysics Data System (ADS)

    Adami, C.; Chmel, S.; Jöster, M.; Pusch, T.; Suhrke, M.

    2015-11-01

    Recent technological developments considerably lowered the barrier for unmanned aerial systems (UAS) to be employed in a variety of usage scenarios, comprising live video transmission from otherwise inaccessible vantage points. As an example, in the French-German ANCHORS project several UAS guided by swarm intelligence provide aerial views and environmental data of a disaster site while deploying an ad-hoc communication network for first responders. Since being able to operate in harsh environmental conditions is a key feature, the immunity of the UAS against radio frequency (RF) exposure has been studied. Conventional Electromagnetic Compatibility (EMC) applied to commercial and industrial electronics is not sufficient since UAS are airborne and can as such move beyond the bounds within which RF exposure is usually limited by regulatory measures. Therefore, the EMC requirements have been complemented by a set of specific RF test frequencies and parameters where strong sources are expected to interfere in the example project test case of an inland port environment. While no essential malfunctions could be observed up to field strengths of 30 V m-1, a sophisticated, more exhaustive approach for testing against potential sources of interference in key scenarios of UAS usage should be derived from our present findings.

  19. High-Resolution Debris Flow Volume Mapping with Unmanned Aerial Systems (uas) and Photogrammetric Techniques

    NASA Astrophysics Data System (ADS)

    Adams, M. S.; Fromm, R.; Lechner, V.

    2016-06-01

    Debris flows cause an average € 30 million damages and 1-2 fatalities every year in Austria. Detailed documentation of their extent and magnitude is essential for understanding, preventing and mitigating these natural hazard events. The recent development of unmanned aerial systems (UAS) has provided a new possibility for on-demand high-resolution monitoring and mapping. Here, we present a study, where the spatial extent and volume of a large debris flow event were mapped with different UAS, fitted with commercial off-the-shelf sensors. Orthophotos and digital terrain models (DTM) were calculated using structure-from-motion photogrammetry software. Terrain height differences caused by the debris flow in the catchment and valley floor were derived by subtracting the pre-event airborne laser scanning (ALS) DTM from a post-event UAS-DTM. The analysis of the volumetric sediment budget showed, that approximately 265,000 m³ material was mobilised in the catchment, of which 45,000 m³ settled there; of the material, which reached the valley floor, 120,000 m³ was deposited, while another 10,000 m³ was eroded from there. The UAS-results were validated against ALS data and imagery from a traditional manned-aircraft photogrammetry campaign. In conclusion, the UAS-data can reach an accuracy and precision comparable to manned aircraft data, but with the added benefits of higher flexibility, easier repeatability, less operational constraints and higher spatial resolution.

  20. Microscale variability of snow depth using U.A.S. technology

    NASA Astrophysics Data System (ADS)

    De Michele, C.; Avanzi, F.; Passoni, D.; Barzaghi, R.; Pinto, L.; Dosso, P.; Ghezzi, A.; Gianatti, R.; Della Vedova, G.

    2015-02-01

    We investigate the capabilities of photogrammetry-based surveys with Unmanned Aerial Systems (U.A.S.) to retrieve the snow depth distribution at cm resolution over a small alpine area (~300 000 m2). For this purpose, we have designed two field campaigns during the 2013/2014 winter season. In the first survey, realized at the beginning of the accumulation season, the digital elevation model of bare soil has been obtained. The second survey, made at the end of the accumulation season, allowed to determine the snow depth distribution as difference with respect to the previous aerial survey. 12 manual measurements of snow depth were collected at random positions in order to run a point comparison with U.A.S. measurements. The spatial integration of U.A.S. snow depth measurements allowed to estimate the snow volume accumulated over the area. We compare this volume estimation with the ones provided by classical interpolation techniques of the 12 point measurements. Results show that the U.A.S. technique provides an accurate estimation of point snow depth values (the average difference with reference to manual measurements is of -7.3 cm), and a distributed evaluation of the snow accumulation patterns. Moreover, the interpolation techniques considered return average differences in snow volume estimation, with respect to the one obtained through the U.A.S. technology, equal to ~21%.

  1. Electromyographic Patterns during Golf Swing: Activation Sequence Profiling and Prediction of Shot Effectiveness.

    PubMed

    Verikas, Antanas; Vaiciukynas, Evaldas; Gelzinis, Adas; Parker, James; Olsson, M Charlotte

    2016-01-01

    This study analyzes muscle activity, recorded in an eight-channel electromyographic (EMG) signal stream, during the golf swing using a 7-iron club and exploits information extracted from EMG dynamics to predict the success of the resulting shot. Muscles of the arm and shoulder on both the left and right sides, namely flexor carpi radialis, extensor digitorum communis, rhomboideus and trapezius, are considered for 15 golf players (∼5 shots each). The method using Gaussian filtering is outlined for EMG onset time estimation in each channel and activation sequence profiling. Shots of each player revealed a persistent pattern of muscle activation. Profiles were plotted and insights with respect to player effectiveness were provided. Inspection of EMG dynamics revealed a pair of highest peaks in each channel as the hallmark of golf swing, and a custom application of peak detection for automatic extraction of swing segment was introduced. Various EMG features, encompassing 22 feature sets, were constructed. Feature sets were used individually and also in decision-level fusion for the prediction of shot effectiveness. The prediction of the target attribute, such as club head speed or ball carry distance, was investigated using random forest as the learner in detection and regression tasks. Detection evaluates the personal effectiveness of a shot with respect to the player-specific average, whereas regression estimates the value of target attribute, using EMG features as predictors. Fusion after decision optimization provided the best results: the equal error rate in detection was 24.3% for the speed and 31.7% for the distance; the mean absolute percentage error in regression was 3.2% for the speed and 6.4% for the distance. Proposed EMG feature sets were found to be useful, especially when used in combination. Rankings of feature sets indicated statistics for muscle activity in both the left and right body sides, correlation-based analysis of EMG dynamics and features

  2. Electromyographic Patterns during Golf Swing: Activation Sequence Profiling and Prediction of Shot Effectiveness

    PubMed Central

    Verikas, Antanas; Vaiciukynas, Evaldas; Gelzinis, Adas; Parker, James; Olsson, M. Charlotte

    2016-01-01

    This study analyzes muscle activity, recorded in an eight-channel electromyographic (EMG) signal stream, during the golf swing using a 7-iron club and exploits information extracted from EMG dynamics to predict the success of the resulting shot. Muscles of the arm and shoulder on both the left and right sides, namely flexor carpi radialis, extensor digitorum communis, rhomboideus and trapezius, are considered for 15 golf players (∼5 shots each). The method using Gaussian filtering is outlined for EMG onset time estimation in each channel and activation sequence profiling. Shots of each player revealed a persistent pattern of muscle activation. Profiles were plotted and insights with respect to player effectiveness were provided. Inspection of EMG dynamics revealed a pair of highest peaks in each channel as the hallmark of golf swing, and a custom application of peak detection for automatic extraction of swing segment was introduced. Various EMG features, encompassing 22 feature sets, were constructed. Feature sets were used individually and also in decision-level fusion for the prediction of shot effectiveness. The prediction of the target attribute, such as club head speed or ball carry distance, was investigated using random forest as the learner in detection and regression tasks. Detection evaluates the personal effectiveness of a shot with respect to the player-specific average, whereas regression estimates the value of target attribute, using EMG features as predictors. Fusion after decision optimization provided the best results: the equal error rate in detection was 24.3% for the speed and 31.7% for the distance; the mean absolute percentage error in regression was 3.2% for the speed and 6.4% for the distance. Proposed EMG feature sets were found to be useful, especially when used in combination. Rankings of feature sets indicated statistics for muscle activity in both the left and right body sides, correlation-based analysis of EMG dynamics and features

  3. Exploration of the sequence specificity of pp60c-src tyrosine kinase. Minimal peptide sequence required for maximal activity.

    PubMed

    Edison, A M; Barker, S C; Kassel, D B; Luther, M A; Knight, W B

    1995-11-10

    The minimum length required for phosphorylation of a peptide by pp60c-src tyrosine kinase (srcTK) was delineated in this work. Budde (M.D. Anderson University of Texas, personal communication) suggested that the peptide (FGE)3Y(GEF)2GD (peptide I) was a "good" srcTK substrate. Peptide I yielded a 251-fold higher kcat/Km than RRLIEDAEYAARRG, a peptide substrate based upon the autophosphorylation site of srcTK. This was due to a 38-fold lower Km and a 6.6-fold increase in kcat.N-terminal truncation of up to 8 residues in a series of peptides yielded only a 3-fold decrease in activity. Removal of the final N-terminal residue resulted in a 10-fold loss in substrate activity, primarily as a result of an increase in the Km. C-terminal truncations ending in the amide yielded no significant loss in activity until the Y + 3 residue was removed, which resulted in a 73-fold decrease in kcat/Km relative to peptide I. The latter was due primarily to an increase in Km. The results from peptides truncated on both termini suggest that subsite recognition N- and C-terminal relative to the site of phosphorylation can be examined independently. In addition, the observation that only 5 residues are required for significant substrate activity suggests that small molecule inhibitors based upon interactions with the phosphoacceptor site may be developed. PMID:7592964

  4. Suppression of integrin activation by the membrane-distal sequence of the integrin alphaIIb cytoplasmic tail.

    PubMed Central

    Yamanouchi, Jun; Hato, Takaaki; Tamura, Tatsushiro; Fujita, Shigeru

    2004-01-01

    Integrin cytoplasmic tails regulate integrin activation including an increase in integrin affinity for ligands. Although there is ample evidence that the membrane-proximal regions of the alpha and beta tails interact with each other to maintain integrins in a low-affinity state, little is known about the role of the membrane-distal region of the alpha tail in regulation of integrin activation. We report a critical sequence for regulation of integrin activation in the membrane-distal region of the alphaIIb tail. Alanine substitution of the RPP residues in the alphaIIb tail rendered alphaIIbbeta3 constitutively active in a metabolic energy-dependent manner. Although an alphaIIb/alpha6Abeta3 chimaeric integrin, in which the alphaIIb tail was replaced by the alpha6A tail, was in an energy-dependent active state to bind soluble ligands, introduction of the RPP sequence into the alpha6A tail inhibited binding of an activation-dependent antibody PAC1. In alphaIIb/alpha6Abeta3, deleting the TSDA sequence from the alpha6A tail or single amino acid substitutions of the TSDA residues inhibited alphaIIb/alpha6Abeta3 activation and replacing the membrane-distal region of the alphaIIb tail with TSDA rendered alphaIIbbeta3 active, suggesting a stimulatory role of TSDA in energy-dependent integrin activation. However, adding TSDA to the alphaIIb tail containing the RPP sequence of the membrane-distal region failed to activate alphaIIbbeta3. These results suggest that the RPP sequence after the GFFKR motif of the alphaIIb tail suppresses energy-dependent alphaIIbbeta3 activation. These findings provide a molecular basis for the regulation of energy-dependent integrin activation by alpha subunit tails. PMID:14723599

  5. The influence of viral coding sequences on pestivirus IRES activity reveals further parallels with translation initiation in prokaryotes.

    PubMed Central

    Fletcher, Simon P; Ali, Iraj K; Kaminski, Ann; Digard, Paul; Jackson, Richard J

    2002-01-01

    Classical swine fever virus (CSFV) is a member of the pestivirus family, which shares many features in common with hepatitis C virus (HCV). It is shown here that CSFV has an exceptionally efficient cis-acting internal ribosome entry segment (IRES), which, like that of HCV, is strongly influenced by the sequences immediately downstream of the initiation codon, and is optimal with viral coding sequences in this position. Constructs that retained 17 or more codons of viral coding sequence exhibited full IRES activity, but with only 12 codons, activity was approximately 66% of maximum in vitro (though close to maximum in transfected BHK cells), whereas with just 3 codons or fewer, the activity was only approximately 15% of maximum. The minimal coding region elements required for high activity were exchanged between HCV and CSFV. Although maximum activity was observed in each case with the homologous combination of coding region and 5' UTR, the heterologous combinations were sufficiently active to rule out a highly specific functional interplay between the 5' UTR and coding sequences. On the other hand, inversion of the coding sequences resulted in low IRES activity, particularly with the HCV coding sequences. RNA structure probing showed that the efficiency of internal initiation of these chimeric constructs correlated most closely with the degree of single-strandedness of the region around and immediately downstream of the initiation codon. The low activity IRESs could not be rescued by addition of supplementary eIF4A (the initiation factor with ATP-dependent RNA helicase activity). The extreme sensitivity to secondary structure around the initiation codon is likely to be due to the fact that the eIF4F complex (which has eIF4A as one of its subunits) is not required for and does not participate in initiation on these IRESs. PMID:12515388

  6. Triphasic spike-timing-dependent plasticity organizes networks to produce robust sequences of neural activity

    PubMed Central

    Waddington, Amelia; Appleby, Peter A.; De Kamps, Marc; Cohen, Netta

    2012-01-01

    Synfire chains have long been proposed to generate precisely timed sequences of neural activity. Such activity has been linked to numerous neural functions including sensory encoding, cognitive and motor responses. In particular, it has been argued that synfire chains underlie the precise spatiotemporal firing patterns that control song production in a variety of songbirds. Previous studies have suggested that the development of synfire chains requires either initial sparse connectivity or strong topological constraints, in addition to any synaptic learning rules. Here, we show that this necessity can be removed by using a previously reported but hitherto unconsidered spike-timing-dependent plasticity (STDP) rule and activity-dependent excitability. Under this rule the network develops stable synfire chains that possess a non-trivial, scalable multi-layer structure, in which relative layer sizes appear to follow a universal function. Using computational modeling and a coarse grained random walk model, we demonstrate the role of the STDP rule in growing, molding and stabilizing the chain, and link model parameters to the resulting structure. PMID:23162457

  7. Active cardiac model and its application on structure detection from early fetal ultrasound sequences.

    PubMed

    Deng, Yinhui; Wang, Yuanyuan; Shen, Yuzhong; Chen, Ping

    2012-04-01

    The structure of an early fetal heart provides vital information for the diagnosis of fetus defects. However, early fetal hearts are difficult to detect due to their relatively small size and the low signal-to-noise ratio of ultrasound images. In this paper, a novel method is proposed for automatic detection of early fetal cardiac structure from ultrasound images. The proposed method consists of two major parts which are the preprocessing phase and the active cardiac model: (1) The preprocessing phase consists of two sub-steps. (a) The region of interest is first automatically selected based on an accumulated motion image, which is able to represent the motion information of the fetal heart more accurately. (b) Then by combining Rayleigh-trimmed filter and anisotropic diffusion in 3-dimensional space, a despeckling method is developed to suppress the speckle noise and emphasize the motion information for subsequent cardiac structure detection. (2) The active cardiac model is proposed for the detection of fetal heart structure, which is a key contribution of this paper. It takes into account both the structure and motion information of fetal hearts simultaneously. Both learning and inference of the active cardiac model are described in the paper. Experiments on seven ultrasound sequences demonstrate the effectiveness of the proposed method. PMID:21620676

  8. LLNL's Big Science Capabilities Help Spur Over $796 Billion in U.S. Economic Activity Sequencing the Human Genome

    SciTech Connect

    Stewart, Jeffrey S.

    2015-07-28

    LLNL’s successful history of taking on big science projects spans beyond national security and has helped create billions of dollars per year in new economic activity. One example is LLNL’s role in helping sequence the human genome. Over $796 billion in new economic activity in over half a dozen fields has been documented since LLNL successfully completed this Grand Challenge.

  9. HALE UAS Command and Control Communications: Step 1 - Functional Requirements Document. Version 4.0

    NASA Technical Reports Server (NTRS)

    2006-01-01

    The High Altitude Long Endurance (HALE) unmanned aircraft system (UAS) communicates with an off-board pilot-in-command in all flight phases via the C2 data link, making it a critical component for the UA to fly in the NAS safely and routinely. This is a new requirement in current FAA communications planning and monitoring processes. This document provides a set of comprehensive C2 communications functional requirements and performance guidelines to help facilitate the future FAA certification process for civil UAS to operate in the NAS. The objective of the guidelines is to provide the ability to validate the functional requirements and in future be used to develop performance-level requirements.

  10. UAS Air Traffic Controller Acceptability Study-2: Effects of Communications Delays and Winds in Simulation

    NASA Technical Reports Server (NTRS)

    Comstock, James R., Jr.; Ghatas, Rania W.; Consiglio, Maria C.; Chamberlain, James P.; Hoffler, Keith D.

    2016-01-01

    This study evaluated the effects of Communications Delays and Winds on Air Traffic Controller ratings of acceptability of horizontal miss distances (HMDs) for encounters between UAS and manned aircraft in a simulation of the Dallas-Ft. Worth East-side airspace. Fourteen encounters per hour were staged in the presence of moderate background traffic. Seven recently retired controllers with experience at DFW served as subjects. Guidance provided to the UAS pilots for maintaining a given HMD was provided by information from self-separation algorithms displayed on the Multi-Aircraft Simulation System. Winds tested did not affect the acceptability ratings. Communications delays tested included 0, 400, 1200, and 1800 msec. For longer communications delays, there were changes in strategy and communications flow that were observed and reported by the controllers. The aim of this work is to provide useful information for guiding future rules and regulations applicable to flying UAS in the NAS.

  11. A Family of Well-Clear Boundary Models for the Integration of UAS in the NAS

    NASA Technical Reports Server (NTRS)

    Munoz, Cesar A.; Narkawicz, Anthony; Chamberlain, James; Consiglio, Maria; Upchurch, Jason

    2014-01-01

    The FAA-sponsored Sense and Avoid Workshop for Unmanned Aircraft Systems (UAS) defines the concept of sense and avoid for remote pilots as "the capability of a UAS to remain well clear from and avoid collisions with other airborne traffic." Hence, a rigorous definition of well clear is fundamental to any separation assurance concept for the integration of UAS into civil airspace. This paper presents a family of well-clear boundary models based on the TCAS II Resolution Advisory logic. For these models, algorithms that predict well-clear violations along aircraft current trajectories are provided. These algorithms are analogous to conflict detection algorithms but instead of predicting loss of separation, they predict whether well-clear violations will occur during a given lookahead time interval. Analytical techniques are used to study the properties and relationships satisfied by the models.

  12. Wind Tunnel and Hover Performance Test Results for Multicopter UAS Vehicles

    NASA Technical Reports Server (NTRS)

    Russell, Carl R.; Jung, Jaewoo; Willink, Gina; Glasner, Brett

    2016-01-01

    There is currently a lack of published data for the performance of multicopter unmanned aircraft system (UAS) vehicles, such as quadcopters and octocopters, often referred to collectively as drones. With the rapidly increasing popularity of multicopter UAS, there is interest in better characterizing the performance of this type of aircraft. By studying the performance of currently available vehicles, it will be possible to develop models for vehicles at this scale that can accurately predict performance and model trajectories. This paper describes a wind tunnel test that was recently performed in the U.S. Army's 7- by 10-ft Wind Tunnel at NASA Ames Research Center. During this wind tunnel entry, five multicopter UAS vehicles were tested to determine forces and moments as well as electrical power as a function of wind speed, rotor speed, and vehicle attitude. The test is described here in detail, and a selection of the key results from the test is presented.

  13. Evaluation of the Trade Space Between UAS Maneuver Performance and SAA System Performance Requirements

    NASA Technical Reports Server (NTRS)

    Jack, Devin P.; Hoffler, Keith D.; Johnson, Sally C.

    2014-01-01

    A need exists to safely integrate Unmanned Aircraft Systems (UAS) into the National Airspace System. Replacing manned aircraft's see-and-avoid capability in the absence of an onboard pilot is one of the key challenges associated with safe integration. Sense-and-avoid (SAA) systems will have to achieve yet-to-be-determined required separation distances for a wide range of encounters. They will also need to account for the maneuver performance of the UAS they are paired with. The work described in this paper is aimed at developing an understanding of the trade space between UAS maneuver performance and SAA system performance requirements. An assessment of current manned and unmanned aircraft performance was used to establish potential UAS performance test matrix bounds. Then, nearterm UAS integration work was used to narrow down the scope. A simulator was developed with sufficient fidelity to assess SAA system performance requirements for a wide range of encounters. The simulator generates closest-point-of-approach (CPA) data from the wide range of UAS performance models maneuvering against a single intruder with various encounter geometries. The simulator is described herein and has both a graphical user interface and batch interface to support detailed analysis of individual UAS encounters and macro analysis of a very large set of UAS and encounter models, respectively. Results from the simulator using approximate performance data from a well-known manned aircraft is presented to provide insight into the problem and as verification and validation of the simulator. Analysis of climb, descent, and level turn maneuvers to avoid a collision is presented. Noting the diversity of backgrounds in the UAS community, a description of the UAS aerodynamic and propulsive design and performance parameters is included. Initial attempts to model the results made it clear that developing maneuver performance groups is required. Discussion of the performance groups developed and how

  14. Varying Levels of Automation on UAS Operator Responses to Traffic Resolution Advisories in Civil Airspace

    NASA Technical Reports Server (NTRS)

    Kenny, Caitlin; Fern, Lisa

    2012-01-01

    Continuing demand for the use of Unmanned Aircraft Systems (UAS) has put increasing pressure on operations in civil airspace. The need to fly UAS in the National Airspace System (NAS) in order to perform missions vital to national security and defense, emergency management, and science is increasing at a rapid pace. In order to ensure safe operations in the NAS, operators of unmanned aircraft, like those of manned aircraft, may be required to maintain separation assurance and avoid loss of separation with other aircraft while performing their mission tasks. This experiment investigated the effects of varying levels of automation on UAS operator performance and workload while responding to conflict resolution instructions provided by the Tactical Collision Avoidance System II (TCAS II) during a UAS mission in high-density airspace. The purpose of this study was not to investigate the safety of using TCAS II on UAS, but rather to examine the effect of automation on the ability of operators to respond to traffic collision alerts. Six licensed pilots were recruited to act as UAS operators for this study. Operators were instructed to follow a specified mission flight path, while maintaining radio contact with Air Traffic Control and responding to TCAS II resolution advisories. Operators flew four, 45 minute, experimental missions with four different levels of automation: Manual, Knobs, Management by Exception, and Fully Automated. All missions included TCAS II Resolution Advisories (RAs) that required operator attention and rerouting. Operator compliance and reaction time to RAs was measured, and post-run NASA-TLX ratings were collected to measure workload. Results showed significantly higher compliance rates, faster responses to TCAS II alerts, as well as less preemptive operator actions when higher levels of automation are implemented. Physical and Temporal ratings of workload were significantly higher in the Manual condition than in the Management by Exception and

  15. Performance evaluation of optimization methods for super-resolution mosaicking on UAS surveillance videos

    NASA Astrophysics Data System (ADS)

    Camargo, Aldo; He, Qiang; Palaniappan, K.

    2012-06-01

    Unmanned Aircraft Systems (UAS) have been widely applied into military reconnaissance and surveillance by exploiting the information collected from the digital imaging payload. However, the data analysis of UAS videos is frequently limited by motion blur; the frame-to-frame movement induced by aircraft roll, wind gusts, and less than ideal atmospheric conditions; and the noise inherent within the image sensors. Therefore, the super-resolution mosaicking on low-resolution UAS surveillance video frames, becomes an important task for UAS video processing and is a pre-step for further effective image understanding. Here we develop a novel super-resolution framework which does not require the construction of sparse matrices. This method applied image operators in spatial domain and adopted an iterated back-projection method to conduct super-resolution mosaics from UAS surveillance video frames. The Steepest Descent method, Conjugate Gradient method and Levenberg Marquardt algorithm are used to numerically solve the nonlinear optimization problem in the modeling of super-resolution mosaic. A quantity comparison in computation time and visual performance of the super-resolution using the three numerical methods is performed. The Levenberg Marquardt algorithm provides a numerical solution to the least squares curve fitting, which avoids the time-consuming computation of the inverse of the pseudo Hessian matrix in regular singular value decomposition (SVD). The Levenberg Marquardt method, interpolating between the Gauss-Newton algorithm (GNA) and the method of gradient descent, is efficient, robust, and easy to implement. The results obtained in our simulations shows a great improvement of the resolution of the low resolution mosaic of up to 47.54 dB for synthetic images, and a considerable visual improvement in sharpness and visual details for real UAS surveillance frames. The convergence is generally reached in no more than ten iterations.

  16. The primary role of active large sand seas in forming warm-desert loess sequences

    NASA Astrophysics Data System (ADS)

    Crouvi, O.; Enzel, Y.; Amit, R.; Gillespie, A.

    2009-12-01

    Loess is a widespread aeolian deposit in warm deserts and their semiarid margins. It is commonly dominated by coarse silts. Quartz particles, commonly angular, are the main component (commonly 50%-70%) of this coarse silt fraction. Despite intensive research during the past century on loess formation, the origin of these coarse quartz silts comprising most of desert loess remains one of the fundamental debated problems in sedimentology and Quaternary geology. The ongoing debate is focused on the first stage of loess formation - the production of the quartz silt grains. Therefore this debate influences interpretations of past environmental and climatic changes. Although laboratory experiments indicate the potential of spalling coarse silt grains from abrading sand grains during saltation, field-based evidence is rare and the concept has been minimized and even rejected. We examined in detail data available for several well-known loess zones in subtropical deserts (including: Sahara, Sinai-Negev, Arabia) and show that all these, desert loess sequences are located downwind of adjacent sand dunes/seas both during the late Pleistocene as indicated by dune directions and even at present as indicated by wind data and drift analyses. Additional observations include: (a) mineralogical similarity between the loess and the upwind sand dunes, (b) temporal association of intensified erg activity and loess formation, and (c) grain-size mode reduction of loess with distance from ergs. Where there is no loess sequence downwind of ergs, there is an ocean, sometimes with reported silts (interpreted as dust) in coastal and deeper sea cores. These observations suggest that sand dunes must have been an important source for desert loess. We postulate that the silt grains are generated through active aeolian abrasion of sand grains during episodes of intense windy conditions, in most cases in glacial times. Thus our findings stress that the primary role of active ergs and aeolian

  17. The Pollino Seismic Sequence: Activated Graben Structures in a Seismic Gap

    NASA Astrophysics Data System (ADS)

    Rößler, Dirk; Passarelli, Luigi; Govoni, Aladino; Bindi, Dino; Cesca, Simone; Hainzl, Sebatian; Maccaferri, Francesco; Rivalta, Eleonora; Woith, Heiko; Dahm, Torsten

    2015-04-01

    The Mercure Basin (MB) and the Castrovillari Fault (CF) in the Pollino range (Southern Apennines, Italy) represent one of the most prominent seismic gaps in the Italian seismic catalogue, with no M>5.5 earthquakes during the last centuries. In historical times several swarm-like seismic sequences occurred in the area including two intense swarms within the past two decades. The most energetic one started in 2010 and has been still active in 2014. The seismicity culminated in autumn 2012 with a M=5 event on 25 October. The range hosts a number of opposing normal faults forming a graben-like structure. Their rheology and their interactions are unclear. Current debates include the potential of the MB and the CF to host large earthquakes and the style of deformation. Understanding the seismicity and the behaviour of the faults is necessary to assess the tectonics and the seismic hazard. The GFZ German Research Centre for Geosciences and INGV, Italy, have jointly monitored the ongoing seismicity using a small-aperture seismic array, integrated in a temporary seismic network. Based on this installation, we located more than 16,000 local earthquakes that occurred between November 2012 and September 2014. Here we investigate quantitatively all the phases of the seismic sequence starting from January 2010. Event locations along with moment tensor inversion constrain spatially the structures activated by the swarm and the migration pattern of the seismicity. The seismicity forms clusters concentrated within the southern part of the MB and along the Pollino Fault linking MB and CF. Most earthquakes are confined to the upper 10 km of the crust in an area of ~15x15 km2. However, sparse seismicity at depths between 15 and 20 km and moderate seismicity further north with deepening hypocenters also exist. In contrast, the CF appears aseismic; only the northern part has experienced micro-seismicity. The spatial distribution is however more complex than the major tectonic structures

  18. Observing Supercells with Unmanned Aircraft: Results from the UAS Component of VORTEX-2

    NASA Astrophysics Data System (ADS)

    Houston, A. L.; Argrow, B.; Frew, E.

    2010-12-01

    In the second Verification of the Origins of Rotation in Tornadoes Experiment (VORTEX-2) autonomous unmanned aircraft were used for the first time to collect in-situ observations in close proximity to supercells. The use of unmanned aircraft to collect data significant to stormscale research has long been recognized. However, collecting these data requires aircraft operation beyond the visual line of sight of the controller which necessitates aircraft autonomy. An autonomous unmanned aircraft requires a significantly more complex command and control system and elicits more scrutiny by airspace regulatory agencies. Therefore, while the potential utility of unmanned aircraft systems (UAS, the unmanned aircraft along with the communications and logistics infrastructure required for their operation) for stormscale research may be obvious, the engineering and regulatory hurdles that must be overcome for their use are significant. Surmounting these engineering and regulatory hurdles was the principal objective of the UAS component of VORTEX-2. Regulatory hurdles prevented UAS operations in the first year of VORTEX-2. However, the Federal Aviation Administration (tasked with regulating all UAS operations) granted the UAS group certificates of authorization (CoA) to fly for all of year-2 over northeast CO, southwest NE, and northwest KS. The majority of the engineering hurdles involved the communication system necessary to 1) command and control the aircraft through its on-board autopilot and 2) direct ground-based vehicles required to remain compliant with FAA regulations. Testing during both year-1 and -2 yielded a robust communication system. Lessons learned from interactions with the FAA along with an overview of the communication system will be presented at the conference. Scientifically, the UAS in VORTEX-2 was tasked with collecting in-situ observations of the temperature and moisture above the surface across the rear flank gust front (RFGF) and within the rear

  19. Distinct sequence elements control the specificity of G protein activation by muscarinic acetylcholine receptor subtypes.

    PubMed Central

    Lechleiter, J; Hellmiss, R; Duerson, K; Ennulat, D; David, N; Clapham, D; Peralta, E

    1990-01-01

    Relatively little is understood concerning the mechanisms by which subtypes of receptors, G proteins and effector enzymes interact to transduce specific signals. Through expression of normal, hybrid and deletion mutant receptors in Xenopus oocytes, we determined the G protein coupling characteristics of the functionally distinct m2 and m3 muscarinic acetylcholine receptor (mAChR) subtypes and identified the critical receptor sequences responsible for G protein specificity. Activation of a pertussis toxin insensitive G protein pathway, leading to a rapid and transient release of intracellular Ca2+ characteristic of the m3 receptor, could be specified by the transfer of as few as nine amino acids from the m3 to the m2 receptor. In a reciprocal manner, transfer of no more than 21 residues from the m2 to the m3 receptor was sufficient to specify activation of a pertussis toxin sensitive G protein coupled to a slow and oscillatory Ca2+ release pathway typical of the m2 subtype. Notably, these critical residues occur within the same region of the third cytoplasmic domain of functionally distinct mAChR subtypes. Images Fig. 1. Fig. 2. Fig. 4. Fig. 5. PMID:2124972

  20. CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning

    PubMed Central

    Modi, Mehrab N; Dhawale, Ashesh K; Bhalla, Upinder S

    2014-01-01

    Animals can learn causal relationships between pairs of stimuli separated in time and this ability depends on the hippocampus. Such learning is believed to emerge from alterations in network connectivity, but large-scale connectivity is difficult to measure directly, especially during learning. Here, we show that area CA1 cells converge to time-locked firing sequences that bridge the two stimuli paired during training, and this phenomenon is coupled to a reorganization of network correlations. Using two-photon calcium imaging of mouse hippocampal neurons we find that co-time-tuned neurons exhibit enhanced spontaneous activity correlations that increase just prior to learning. While time-tuned cells are not spatially organized, spontaneously correlated cells do fall into distinct spatial clusters that change as a result of learning. We propose that the spatial re-organization of correlation clusters reflects global network connectivity changes that are responsible for the emergence of the sequentially-timed activity of cell-groups underlying the learned behavior. DOI: http://dx.doi.org/10.7554/eLife.01982.001 PMID:24668171

  1. Meeting of Experts on NASA's Unmanned Aircraft System (UAS) Integration in the National Airspace Systems (NAS) Project

    NASA Technical Reports Server (NTRS)

    Wolfe, Jean; Bauer, Jeff; Bixby, C.J.; Lauderdale, Todd; Shively, Jay; Griner, James; Hayhurst, Kelly

    2010-01-01

    Topics discussed include: Aeronautics Research Mission Directorate Integrated Systems Research Program (ISRP) and UAS Integration in the NAS Project; UAS Integration into the NAS Project; Separation Assurance and Collision Avoidance; Pilot Aircraft Interface Objectives/Rationale; Communication; Certification; and Integrated Tests and Evaluations.

  2. Shared Investment Projects and Forecasting Errors: Setting Framework Conditions for Coordination and Sequencing Data Quality Activities

    PubMed Central

    Leitner, Stephan; Brauneis, Alexander; Rausch, Alexandra

    2015-01-01

    In this paper, we investigate the impact of inaccurate forecasting on the coordination of distributed investment decisions. In particular, by setting up a computational multi-agent model of a stylized firm, we investigate the case of investment opportunities that are mutually carried out by organizational departments. The forecasts of concern pertain to the initial amount of money necessary to launch and operate an investment opportunity, to the expected intertemporal distribution of cash flows, and the departments’ efficiency in operating the investment opportunity at hand. We propose a budget allocation mechanism for coordinating such distributed decisions The paper provides guidance on how to set framework conditions, in terms of the number of investment opportunities considered in one round of funding and the number of departments operating one investment opportunity, so that the coordination mechanism is highly robust to forecasting errors. Furthermore, we show that—in some setups—a certain extent of misforecasting is desirable from the firm’s point of view as it supports the achievement of the corporate objective of value maximization. We then address the question of how to improve forecasting quality in the best possible way, and provide policy advice on how to sequence activities for improving forecasting quality so that the robustness of the coordination mechanism to errors increases in the best possible way. At the same time, we show that wrong decisions regarding the sequencing can lead to a decrease in robustness. Finally, we conduct a comprehensive sensitivity analysis and prove that—in particular for relatively good forecasters—most of our results are robust to changes in setting the parameters of our multi-agent simulation model. PMID:25803736

  3. Shared investment projects and forecasting errors: setting framework conditions for coordination and sequencing data quality activities.

    PubMed

    Leitner, Stephan; Brauneis, Alexander; Rausch, Alexandra

    2015-01-01

    In this paper, we investigate the impact of inaccurate forecasting on the coordination of distributed investment decisions. In particular, by setting up a computational multi-agent model of a stylized firm, we investigate the case of investment opportunities that are mutually carried out by organizational departments. The forecasts of concern pertain to the initial amount of money necessary to launch and operate an investment opportunity, to the expected intertemporal distribution of cash flows, and the departments' efficiency in operating the investment opportunity at hand. We propose a budget allocation mechanism for coordinating such distributed decisions The paper provides guidance on how to set framework conditions, in terms of the number of investment opportunities considered in one round of funding and the number of departments operating one investment opportunity, so that the coordination mechanism is highly robust to forecasting errors. Furthermore, we show that-in some setups-a certain extent of misforecasting is desirable from the firm's point of view as it supports the achievement of the corporate objective of value maximization. We then address the question of how to improve forecasting quality in the best possible way, and provide policy advice on how to sequence activities for improving forecasting quality so that the robustness of the coordination mechanism to errors increases in the best possible way. At the same time, we show that wrong decisions regarding the sequencing can lead to a decrease in robustness. Finally, we conduct a comprehensive sensitivity analysis and prove that-in particular for relatively good forecasters-most of our results are robust to changes in setting the parameters of our multi-agent simulation model. PMID:25803736

  4. Effects of bail activation sequence and feed availability on cow traffic and milk harvesting capacity in a robotic rotary dairy.

    PubMed

    Kolbach, R; Kerrisk, K L; Garcia, S C; Dhand, N K

    2013-04-01

    This study was conducted to investigate the effects of different bail activation sequences in combination with feed availability on cow traffic and harvesting capacity in a novel prototype robotic rotary (RR; DeLaval AMR, Tumba, Sweden). The RR can milk up to 50 cows/h. However, in voluntary cow traffic systems, the number of cows presenting may be low at certain times of the day (or during certain months or seasons in seasonal calving systems). In these circumstances, the ratio of active bails to the number of cows available may be undesirably high, with consequential negative effects on system efficiency and milk quality (the RR does not flush individual units automatically after each milking). Activating only 50% of the bails may be a management strategy chosen to cope with periods of underutilization. Four treatments with a total activation of 50% of bails [8 bails with activation sequences of 8, 4, 2, or 1 consecutive bail(s)], with or without the presence of feed on the RR, were observed during sixteen 4-h observation periods after a system wash. The absence of feed resulted in a significant increase in the proportion of available bails remaining idle, but no significant differences were observed across the 4 bail activation sequences. Overall, the effect of bail activation sequence on cow traffic was negligible, but the sequences that had more consecutive bail activations resulted in more robot operations being conducted simultaneously and more milk being harvested per minute of robot operation time. A feeding function upon entry to the RR platform, in combination with bails activated sequentially, would lead to a more efficient use of the RR. PMID:23415530

  5. An epistemological analysis of the evolution of didactical activities in teaching-learning sequences: the case of fluids

    NASA Astrophysics Data System (ADS)

    Psillos, D.

    2004-05-01

    In the present paper we propose a theoretical framework for an epistemological modelling of teaching-learning (didactical) activities, which draws on recent studies of scientific practice. We present and analyse the framework, which includes three categories: namely, Cosmos- Evidence-Ideas (CEI). We also apply this framework in order to model a posteriori the didactical activities included in three successive teaching-learning sequences in the field of fluids, developed gradually by the same researchers over several years under evolving dominant approaches to science teaching and learning (transmission, discovery, constructivist). For each sequence we analyse the planned activities included in student and teacher documents in terms of the CEI model. We deduce the suggested links (or lack of them) between the three categories and discuss the opportunities that students would have during science teaching to link in each sequence the world of theories with real things.

  6. Hydrolysis of oligoribonucleotides: influence of sequence and length.

    PubMed Central

    Kierzek, R

    1992-01-01

    The chemical stability of phosphodiester bonds of some oligoribonucleotides in the presence of a cofactor like polyvinylpyrolidine (PVP) is sequence dependent. It was found that pyrimidine-A (YA) and pyrimidine-C (YC) are especially susceptible to hydrolysis. The hydrolyzability of this same phosphodiester bond is dependent on its position in the oligomer. The presence of 3' and 5'-adjacent nucleotides enhances hydrolysis of the UA phosphodiester bond. The acceleration of the hydrolysis of UA by a 5'-adjacent nucleotide is not base dependent. However, a 3'-adjacent purine increases hydrolysis of a UA phosphodiester bond more than a 3'-pyrimidine. The presence of the exoamino group on the 3'-side base (on 6 and 4 position for adenosine and cytidine, respectively) of YA or YZ phosphodiester bond is required for hydrolysis. Images PMID:1408823

  7. Morphological analysis of hummocks in debris avalanche deposits using UAS-derived high-definition topographic data

    NASA Astrophysics Data System (ADS)

    Hayakawa, Yuichi S.; Obanawa, Hiroyuki; Yoshida, Hidetsugu; Naruhashi, Ryutaro; Okumura, Koji; Zaiki, Masumi

    2016-04-01

    Debris avalanche caused by sector collapse of a volcanic mountain often forms depositional landforms with characteristic surface morphology comprising hummocks. Geomorphological and sedimentological analyses of debris avalanche deposits (DAD) at the northeastern face of Mt. Erciyes in central Turkey have been performed to investigate the mechanisms and processes of the debris avalanche. The morphometry of hummocks provides an opportunity to examine the volumetric and kinematic characteristics of the DAD. Although the exact age has been unknown, the sector collapse of this DAD was supposed to have occurred in the late Pleistocene (sometime during 90-20 ka), and subsequent sediment supply from the DAD could have affected ancient human activities in the downstream basin areas. In order to measure detailed surface morphology and depositional structures of the DAD, we apply structure-from-motion multi-view stereo (SfM-MVS) photogrammetry using unmanned aerial system (UAS) and a handheld camera. The UAS, including small unmanned aerial vehicle (sUAV) and a digital camera, provides low-altitude aerial photographs to capture surface morphology for an area of several square kilometers. A high-resolution topographic data, as well as an orthorectified image, of the hummocks were then obtained from the digital elevation model (DEM), and the geometric features of the hummocks were examined. A handheld camera is also used to obtain photographs of outcrop face of the DAD along a road to support the seimentological investigation. The three-dimensional topographic models of the outcrop, with a panoramic orthorectified image projected on a vertical plane, were obtained. This data enables to effectively describe sedimentological structure of the hummock in DAD. The detailed map of the DAD is also further examined with a regional geomorphological map to be compared with other geomorphological features including fluvial valleys, terraces, lakes and active faults.

  8. The use of the SCEM-UA optimization algorithm in the calibration of the physically based hydrological model SWAP

    NASA Astrophysics Data System (ADS)

    Rienzner, Michele; Facchi, Arianna; Cesari de Maria, Sandra; Gandolfi, Claudio

    2013-04-01

    In the agricultural seasons 2010 and 2011, an intensive monitoring activity aimed at quantifying fluxes and storage of water in a maize agroecosystem of the Po Valley plain (Northern Italy) was carried out. In the experimental site, instruments for the measurement of water fluxes with the eddy covariance technique were installed. Additionally, in order to measure the terms of the H2O budget also investigating their variability at the field scale, six Intensive Monitoring Plots (IMPs in the following) were identified in the field and instrumentation for the continuous monitoring of water status of the soil (moisture, water potential, groundwater table depth) was installed in each of them. In the two seasons, also periodic campaigns for the determination of biometric parameters of the crop, hydrological parameters of the soil, fluxes of water from maize leaves and from soil were conducted. The experimental field was characterized by a shallow groundwater table depth (0.6 to 1.5 m). In 2010 it was watered by border irrigation, while in 2011 no irrigation events were applied. Monitored data were used to carry out simulations with the physically based hydrological model SWAP (Soil Water Atmosphere Plant model, Kroes and Van Dam, 2003), with the aim of assessing the relative contribution of the various water fluxes (rainfall, irrigation, capillary rise) to maize water requirements. In particular, the SWAP model was implemented using the basis of observational data collected for the two IMPs showing the main differences in terms of soil types, vegetation growth and, limited to 2010, irrigation supply. The two selected IMPs were located at the ends of a transect placed perpendicularly to the irrigation channel. While many parameters and water fluxes necessary for the SWAP implementation and validation were measured directly, it was impossible to detect with sufficient accuracy the saturated hydraulic conductivity at different depths for the two IMPs during the two years of

  9. Characterization and cDNA sequence of Bothriechis schlegeliil-amino acid oxidase with antibacterial activity.

    PubMed

    Vargas Muñoz, Leidy Johana; Estrada-Gomez, Sebastian; Núñez, Vitelbina; Sanz, Libia; Calvete, Juan J

    2014-08-01

    Snake venoms are complex mixtures of proteins including l-amino acid oxidase (lAAO). A lAAO (named BslAAO) with a mass of 56kDa and a theoretical Ip of 5.79, was purified from Bothriechis schlegelii venom through size-exclusion, ion exchange and affinity chromatography. The entire protein sequence of 498 amino acids, was determined from cDNA using reverse-transcribed mRNA isolated from venom gland. The enzyme showed dose-dependent inhibition of bacterial growth. BslAAO showed inhibitory effect against S. aureus with a MIC of 4μg/mL and a MBC of 8μg/mL. Against Acinetobacter baumannii, showed a MIC of 2μg/mL and MBC of 4μg/mL, No effect was observed in Escherichia coli. This antibacterial activity was inhibited by catalase, indicating that antimicrobial activity was due to H2O2 production. BslAAO did not show any cytotoxic activity toward mouse myoblast cell line C2C12 or peripheral blood mononuclear cells. The enzyme oxidated l-Leu, with a Km of 16.37μM and a Vmax of 0.39μM/min. Snake venoms lAAOs, are potential frames of different therapeutics molecules since these enzymes exhibit low MICs and MBCs and show to be harmless to human cells due to microorganisms being generally several fold more sensitive to reactive oxygen species than human tissues. PMID:24875315

  10. Integration and Testing of Miniaturized Volcanic Gas-Sensing Instruments on UAS Platforms

    NASA Astrophysics Data System (ADS)

    Lopez, T. M.; Kern, C.; Diaz, J. A.; Vanderwaal, S. J.; Levy, A.

    2015-12-01

    Volcanologists measure the concentrations and emission rates of gases emitted from active volcanoes to understand magmatic processes, which aids in eruption forecasting, and to evaluate air quality for human and environmental health. Both of these applications become particularly important during periods of unusually high volcanic unrest when it is typically hazardous to approach a given volcano. Unmanned aerial systems (UASs) represent a promising platform for continued gas measurements during unrest, while reducing the risk to volcanologists. Two miniature gas-sensing instruments have been developed specifically for integration onto small UAS platforms. Both instruments weigh 1 kg or less, including integrated power. The microDOAS instrument is an upward-looking UV/vis spectrometer that measures the spectral absorption signature of SO2 and certain halogen oxides in scattered solar radiation. By flying beneath a volcanic plume, the instrument can measure the SO2 content in the plume cross-section which can be used to determine the SO2 emission rate. The miniGas instrument is flown within the volcanic plume and records in situ concentrations of CO2, SO2 and H2S, as well as atmospheric temperature, pressure, relative humidity and GPS location. All data are telemetered back to the base station to immediately alert the operator of potentially hazardous conditions. Both instruments have been successfully tested at active volcanoes in Alaska and Costa Rica and were integrated onto small ACUASI Ptarmigan hexacopters. A test mission was conducted at the Poker Flat Research Range in Alaska. During this experiment both instruments were successfully flown in flight patterns typical of manned volcanic gas measurements and new UAV-specific measurement strategies were developed. Here we describe the instruments and platforms employed, our experimental results and observations, and make recommendations for application to volcanic settings.

  11. Unsupervised spatio-temporal detection of brain functional activation based on hidden Markov multiple event sequence models

    NASA Astrophysics Data System (ADS)

    Faisan, Sylvain; Thoraval, Laurent; Armspach, Jean-Paul; Heitz, Fabrice; Foucher, Jack

    2005-04-01

    This paper presents a novel, completely unsupervised fMRI brain mapping approach that addresses the three problems of hemodynamic response function (HRF) shape variability, neural event timing, and fMRI response linearity. To make it robust, the method takes into account spatial and temporal information directly into the core of the activation detection process. In practice, activation detection is formulated in terms of temporal alignment between the sequence of hemodynamic response onsets (HROs) detected in the fMRI signal at υ and in the spatial neighbourhood of υ, and the sequence of "off-on" transitions observed in the input blocked stimulation paradigm (when considering epoch-related fMRI data), or the sequence of stimuli of the event-based paradigm (when considering event-related fMRI data). This multiple event sequence alignment problem, which comes under multisensor data fusion, is solved within the probabilistic framework of hidden Markov multiple event sequence models (HMMESMs), a special class of hidden Markov models. Results obtained on real and synthetic data compete with those obtained with the popular statistical parametric mapping (SPM) approach, but without necessitating any prior definition of the expected activation patterns, the HMMESM mapping approach being completely unsupervised.

  12. The importance of hinge sequence for loop function and catalytic activity in the reaction catalyzed by triosephosphate isomerase.

    PubMed

    Xiang, J; Sun, J; Sampson, N S

    2001-04-01

    We have determined the sequence requirements for the N-terminal protein hinge of the active-site lid of triosephosphate isomerase. The codons for the hinge (PVW) were replaced with a genetic library of all possible 8000 amino acid combinations. The most active of these 8000 mutants were selected using in vivo complementation of a triosephosphate isomerase-deficient strain of Escherichia coli, DF502. Approximately 0.3 % of the mutants complement DF502 with an activity that is between 10 and 70 % of wild-type activity. They all contain Pro at the first position. Furthermore, the sequences of these hinge mutants reveal that hydrophobic packing is very important for efficient formation of the enediol intermediate. However, the reduced catalytic activities observed are not due to increased rates of loop opening. To explore the relationship between the N-terminal and C-terminal hinges, three semi-active mutants from the N-terminal hinge selection experiment (PLH, PHS and PTF), and six active C-terminal hinge mutants from previous work (NSS, LWA, YSL, KTK, NPN, KVA) were combined to form 18 "double-hinge" mutants. The activities of these mutants suggest that the N-terminal and C-terminal hinge structures affect one another. It appears that specific side-chain interactions are important for forming a catalytically active enzyme, but not for preventing release of the unstable enediol intermediate from the active site of the enzyme. The independence of intermediate release on amino acid sequence is consistent with the absence of a "universal" hinge sequence in structurally related enzymes. PMID:11286559

  13. Optimal oligonucleotide sequences for TLR9 inhibitory activity in human cells: lack of correlation with TLR9 binding.

    PubMed

    Ashman, Robert F; Goeken, J Adam; Latz, Eicke; Lenert, Petar

    2011-03-01

    Toll-like receptor (TLR)9 performs our innate response to bacterial DNA, warning us of the presence of infection. Inhibitory oligodeoxyribonucleotides (INH-ODN) have been developed that selectively block activation of mouse TLR9. Their inhibitory motif consisting of CCx(not-C)(not-C)xxGGG (x = any base) also reduces anti-DNA antibodies in lupus mice. The current study demonstrates that this motif also provides the sequences required to block TLR9 in human B cells and human embryonic kidney (HEK) cells transfected with human TLR9. However, extending the sequence by four to five bases at the 5' end enhanced activity and this enhancement was greater when a phosphorothioate (pS) backbone replaced the native phosphodiester (pO) backbone. A series of pO-backbone INH-ODN representing a 500-fold range of activity in biologic assays was shown to cover less than a 2.5-fold range of avidity for binding human TLR9-Ig fusion protein, eliminating TLR9 ectodomain binding as the explanation for sequence-specific differences in biologic activity. With few exceptions, the relative activity of INH-ODN in Namalwa cells and HEK/human TLR9 cells was similar to that seen in mouse B cells. INH-ODN activity in human peripheral blood B cells correlated significantly with the cell line data. These results favor the conclusion that although the backbone determines strength of TLR9 binding, critical recognition of the INH-ODN sequence necessary for biologic activity is performed by a molecule that is not TLR9. These studies also identify the strongest INH-ODN for human B cells, helping to guide the selection of INH-ODN sequences for therapeutics in any situation where inflammation is enhanced by TLR9. PMID:21393636

  14. Selective Deletion of the Internal Lysine Residue from the Peptide Sequence by Collisional Activation

    NASA Astrophysics Data System (ADS)

    Banerjee, Shibdas; Mazumdar, Shyamalava

    2012-11-01

    The gas-phase peptide ion fragmentation chemistry is always the center of attraction in proteomics to analyze the amino acid sequence of peptides and proteins. In this work, we describe the formation of an anomalous fragment ion, which corresponds to the selective deletion of the internal lysine residue from a series of lysine containing peptides upon collisional activation in the ion trap. We detected several water-loss fragment ions and the maximum number of water molecules lost from a particular fragment ion was equal to the number of lysine residues in that fragment. As a consequence of this water-loss phenomenon, internal lysine residues were found to be deleted from the peptide ion. The N,N-dimethylation of all the amine functional groups of the peptide stopped the internal lysine deletion reaction, but selective N-terminal α-amino acetylation had no effect on this process indicating involvement of the side chains of the lysine residues. The detailed mechanism of the lysine deletion was investigated by multistage CID of the modified and unmodified peptides, by isotope labeling and by energy resolved CID studies. The results suggest that the lysine deletion might occur through a unimolecular multistep mechanism involving a seven-membered cyclic imine intermediate formed by the loss of water from a lysine residue in the protonated peptide. This intermediate subsequently undergoes degradation reaction to deplete the interior imine ring from the peptide backbone leading to the deletion of an internal lysine residue.

  15. Molecular identification of the microbial diversity in two sequencing batch reactors with activated sludge.

    PubMed

    Denecke, Martin; Eilmus, Sascha; Röder, Nadine; Roesch, Christopher; Bothe, Hermann

    2012-02-01

    The diversity of the microbial community was identified in two lab-scale, ideally mixed sequencing batch reactors which were run for 115 days. One of the reactors was intermittently aerated (2 h aerobically/2 h anaerobically) whereas the other was consistently aerated. The amount of biomass as dry matter, the degradation of organic carbon determined by chemical oxygen demand and nitrogen-degradation activity were followed over the operation of the two reactors and did not show significant differences between the two approaches at the end of the experiment. At this point, the composition of the microbial community was determined by a terminal restriction fragment length polymorphism approach using multiple restriction enzymes by which organisms were retrieved to the lowest taxonomic level. The microbial composition was then significantly different. The species richness was at least five-fold higher in the intermittently aerated reactor than in the permanently kept aerobic approach which is in line with the observation that ecosystem disturbances result in higher diversity. PMID:21786107

  16. An Analysis of the Risk from UAS Missions in the National Airspace

    NASA Astrophysics Data System (ADS)

    Awad, Armand

    As Unmanned Aerial Systems (UAS) are integrated into the national airspace, we must be careful to ensure that the hazard rate to human bystanders is sufficiently small. The first source of risk to bystanders involves midair collisions between UAS and other aircraft. The second source of risk concerns risks due to ground impact, both the bystander hazard rate due to aircraft impacting the ground as well as the dependence of crash rate on location. Here, we present first-order models adapted from the literature which estimate the risk due to these various scenarios. Model verification is then achieved through extensive analysis of historic civil aviation accidents. From this, we gain two major insights. First of all, we show that UAS already achieve manned levels of safety with respect to midair collisions. This is because general aviation aircraft routinely operate in conditions where see-and-avoid is used but is not effective. Secondly, we find that the risk due to ground collision of UAS is sufficiently small to allow operations over the majority of the United States. The models presented here are powerful tools that can be used by a general audience to objectively assess the risks associated with various missions in the national airspace.

  17. High Altitude Long Endurance (HALE) Unmanned Aircraft System (UAS): Pilot Knowledge, Skills and Abilities

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This report summarizes the initial work accomplished by the ACCESS 5 Human System Integration (HSI) team to identify Unmanned Aircraft System (UAS) Pilot Knowledge, Skill and Ability (KSA), Training and Medical requirements. To derive this information the following tasks were accomplished: a) Mission and Function analyses were performed; b) Applicable FARs and FAA Advisory Circulars (ACs) were reviewed; c) Meetings were conducted with NASA and FAA Human Factors personnel; d) Surveys were completed by ACCESS 5 HSI Working group UA Pilots; e) Coordination meetings were conducted with the ACCESS 5 Policy IPT. The results of these efforts were used to develop a summary of the current qualifications. for an individual to function as a Pilot In Command (PIC) for UAs currently flown by UNITE companies, to develop preliminary Pilot KSAs for each phase of flight, and to delineate preliminary Pilot Training and Medical requirements. These results are to be provided to the Policy IPT to support their development of recommendations for UA Pilot Rating Criteria, training and medical qualifications. It is expected that the initially an instrument rated pilot will be required to serve as the PIC. However, as operational experience is gained, and automation is applied to accomplish various system functions, it is expected that pilot rating criteria could be lessened.

  18. UAS Integration in the NAS Project Test Site Kick-off Meeting

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal; Witzberger, Kevin; Hackenberg, Davis L.; Murphy, Jim

    2015-01-01

    This briefing was presented during the Test Site Kick Off Meeting to discuss the contract awards for Task 1 and Task 2. This briefing covered a high level overview for contract deliverables, Task 1 - UAS Traffic Management and Task 2, Live Virtual Constructive Distributed Environment.

  19. UAS-derived imagery and terrain models for rangeland mapping and monitoring

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Images from satellites and piloted aircraft have been used extensively for mapping and monitoring rangelands, which comprise approximately 50% of the world’s land area. Unmanned aircraft systems (UAS) are ideally suited for monitoring these vast and remote areas, and derived data can bridge the gap ...

  20. Large UAS Operations in the NAS - The NASA 2007 Western States Fire Missions (WSFM)

    NASA Technical Reports Server (NTRS)

    Buoni, Gregory P.; Howell, Kathleen M.

    2008-01-01

    Objectives: Demonstrate capabilities of UAS to overfly and collect sensor data on wildfires throughout Western US. Demonstrate long-endurance mission capabilities (20+ hours). Image multiple fires (greater than 4 fires per mission), to showcase extendable mission configuration and ability to either linger over key fires or station over disparate regional fires. Deliver real-time imagery to (within 10-minutes of acquisition).

  1. JEFX 10 demonstration of Cooperative Hunter Killer UAS and upstream data fusion

    NASA Astrophysics Data System (ADS)

    Funk, Brian K.; Castelli, Jonathan C.; Watkins, Adam S.; McCubbin, Christopher B.; Marshall, Steven J.; Barton, Jeffrey D.; Newman, Andrew J.; Peterson, Cammy K.; DeSena, Jonathan T.; Dutrow, Daniel A.; Rodriguez, Pedro A.

    2011-05-01

    The Johns Hopkins University Applied Physics Laboratory deployed and demonstrated a prototype Cooperative Hunter Killer (CHK) Unmanned Aerial System (UAS) capability and a prototype Upstream Data Fusion (UDF) capability as participants in the Joint Expeditionary Force Experiment 2010 in April 2010. The CHK capability was deployed at the Nevada Test and Training Range to prosecute a convoy protection operational thread. It used mission-level autonomy (MLA) software applied to a networked swarm of three Raven hunter UAS and a Procerus Miracle surrogate killer UAS, all equipped with full motion video (FMV). The MLA software provides the capability for the hunter-killer swarm to autonomously search an area or road network, divide the search area, deconflict flight paths, and maintain line of sight communications with mobile ground stations. It also provides an interface for an operator to designate a threat and initiate automatic engagement of the target by the killer UAS. The UDF prototype was deployed at the Maritime Operations Center at Commander Second Fleet, Naval Station Norfolk to provide intelligence analysts and the ISR commander with a common fused track picture from the available FMV sources. It consisted of a video exploitation component that automatically detected moving objects, a multiple hypothesis tracker that fused all of the detection data to produce a common track picture, and a display and user interface component that visualized the common track picture along with appropriate geospatial information such as maps and terrain as well as target coordinates and the source video.

  2. Unmanned Aircraft System (UAS) Delegation of Separation in NextGen Airspace

    NASA Technical Reports Server (NTRS)

    Kenny, Caitlin A.; Shively, Robert J.; Jordan, Kevin

    2014-01-01

    The purpose of this study was to determine the feasibility of unmanned aircraft systems (UAS) performing delegated separation in the national airspace system (NAS). Delegated separation is the transfer of responsibility for maintaining separation between aircraft or vehicles from air navigation service providers to the relevant pilot or flight operator. The effects of delegated separation and traffic display information level were collected through performance, workload, and situation awareness measures. The results of this study show benefits related to the use of conflict detection alerts being shown on the UAS operator's cockpit situation display (CSD), and to the use of full delegation. Overall, changing the level of separation responsibility and adding conflict detection alerts on the CSD was not found to have an adverse effect on performance as shown by the low amounts of losses of separation. The use of conflict detection alerts on the CSD and full delegation responsibilities given to the UAS operator were found to create significantly reduced workload, significantly increased situation awareness and significantly easier communications between the UAS operator and air traffic controller without significantly increasing the amount of losses of separation.

  3. UAS-based thermal remote sensing for crop water stress detection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The remote detection of water stress in a biofuel crop field was investigated using canopy temperature measurements. An experimental trial was set up in the central valley of Maui, Hawaii, comprising different sugarcane varieties and irrigation regimes. An unmanned aerial system (UAS) was equipped w...

  4. Point Cloud Generation from sUAS-Mounted iPhone Imagery: Performance Analysis

    NASA Astrophysics Data System (ADS)

    Ladai, A. D.; Miller, J.

    2014-11-01

    The rapidly growing use of sUAS technology and fast sensor developments continuously inspire mapping professionals to experiment with low-cost airborne systems. Smartphones has all the sensors used in modern airborne surveying systems, including GPS, IMU, camera, etc. Of course, the performance level of the sensors differs by orders, yet it is intriguing to assess the potential of using inexpensive sensors installed on sUAS systems for topographic applications. This paper focuses on the quality analysis of point clouds generated based on overlapping images acquired by an iPhone 5s mounted on a sUAS platform. To support the investigation, test data was acquired over an area with complex topography and varying vegetation. In addition, extensive ground control, including GCPs and transects were collected with GSP and traditional geodetic surveying methods. The statistical and visual analysis is based on a comparison of the UAS data and reference dataset. The results with the evaluation provide a realistic measure of data acquisition system performance. The paper also gives a recommendation for data processing workflow to achieve the best quality of the final products: the digital terrain model and orthophoto mosaic. After a successful data collection the main question is always the reliability and the accuracy of the georeferenced data.

  5. Integrating the UAS in Undergraduate Teaching and Research - Opportunities and Challenges at University of North Georgia

    NASA Astrophysics Data System (ADS)

    Sharma, J. B.; Hulsey, D.

    2014-11-01

    The University of North Georgia (UNG) has begun to evaluate both fixed and rotary UAS platforms across the departments to evaluate their potential for furthering both student learning experiences and undergraduate research. A research project of the Institute for Spatial Analysis (IESA) at UNG has acquired the fixed wing eBee UAS and is currently piloting its integration into the undergraduate geospatial science curriculum. Limited very low altitude, line of sight calibration runs within areas of our campus have help us understand the capabilities that this technology brings to learning and research opportunities at UNG. In our pilot area of study on the UNG Gainesville Campus, we will collect overlapping imagery and generate 3-D models. These models will be compared with models based on LiDAR data. Geographic Object Based Image Analysis (GEOBIA) methods are essential to the analysis of voluminous high resolution UAS data and the associated computational and regulatory issues are discussed. Several future interdisciplinary projects are envisaged with the eBee UAS and this project helps establish their viability.

  6. The Use of Uas for Rapid 3d Mapping in Geomatics Education

    NASA Astrophysics Data System (ADS)

    Teo, Tee-Ann; Tian-Yuan Shih, Peter; Yu, Sz-Cheng; Tsai, Fuan

    2016-06-01

    With the development of technology, UAS is an advance technology to support rapid mapping for disaster response. The aim of this study is to develop educational modules for UAS data processing in rapid 3D mapping. The designed modules for this study are focused on UAV data processing from available freeware or trial software for education purpose. The key modules include orientation modelling, 3D point clouds generation, image georeferencing and visualization. The orientation modelling modules adopts VisualSFM to determine the projection matrix for each image station. Besides, the approximate ground control points are measured from OpenStreetMap for absolute orientation. The second module uses SURE and the orientation files from previous module for 3D point clouds generation. Then, the ground point selection and digital terrain model generation can be archived by LAStools. The third module stitches individual rectified images into a mosaic image using Microsoft ICE (Image Composite Editor). The last module visualizes and measures the generated dense point clouds in CloudCompare. These comprehensive UAS processing modules allow the students to gain the skills to process and deliver UAS photogrammetric products in rapid 3D mapping. Moreover, they can also apply the photogrammetric products for analysis in practice.

  7. UAS Integration in the NAS Project: Integrated Test and LVC Infrastructure

    NASA Technical Reports Server (NTRS)

    Murphy, Jim; Hoang, Ty

    2015-01-01

    Overview presentation of the Integrated Test and Evaluation sub-project of the Unmanned Aircraft System (UAS) in the National Airspace System (NAS). The emphasis of the presentation is the Live, Virtual, and Constructive (LVC) system (a broadly used name for classifying modeling and simulation) infrastructure and use of external assets and connection.

  8. UAS Integration in the NAS Project Overview: RTCA SC-228 Plenary DAA Working Group 5

    NASA Technical Reports Server (NTRS)

    Randall, Debra K.

    2014-01-01

    The presentation is intended to allow the public to know and understand NASA's plans for integrated test to allow them the opportunity to provide feedback and suggestions. The integrated testing will support verification and validation of the RTCA SC-228 UAS minimum operation performance standard requirements.

  9. High Uric Acid (UA) Negatively Affects Serum Tartrate-Resistant Acid Phosphatase 5b (TRACP 5b) Immunoassay

    PubMed Central

    Wu, Zhi-Qi; Zhang, Yan; Xie, Erfu; Song, Wei-Juan; Yang, Rui-Xia; Yan, Cheng-Jing; Zhang, Bing-Feng; Xu, Hua-Guo

    2016-01-01

    Background Bone metastases often occur in the majority of patients with advanced cancer, such as prostate cancer, lung cancer and breast cancer. Serum tartrate-resistant acid phosphatase 5b (TRACP 5b), a novel bone resorption marker, has been used gradually in the clinics as a specific and sensitive marker of bone resorption for the early diagnosis of cancer patients with bone metastasis. Here, we reported that high concentrations of uric acid (UA) lead to decrease of TRACP 5b levels and determined whether TRACP 5b level was associated with UA in interference experiment. Methods A total of 77 patients with high concentrations of UA and 77 healthy subjects were tested to evaluate the differences in their TRACP 5b levels. Serial dilutions of UA were respectively spiked with a known concentration of TRACP 5b standard sample, then Serum TRACP 5b was detected by using bone TRAP® Assay. A correction equation was set to eliminate UA-derived TRACP 5b false-decrease. The effect of this correction was evaluated in high-UA individuals. Results The average TRACP level of the high-UA individuals (1.47± 0.62 U/L) was significantly lower than that of the healthy subjects (2.62 ± 0.63 U/L) (t-test, p<0.0001). The UA correction equation derived: ΔTRACP 5b = -1.9751lgΔUA + 3.7365 with an R2 = 0.98899. Application of the UA correction equation resulted in a statistically non-significant difference in TRACP 5b values between the healthy subjects and high-UA individuals (p = 0.24). Conclusions High UA concentrations can falsely decrease TRACP 5b levels due to a method-related systematic error. To avoid misdiagnoses or inappropriate therapeutic decisions, increased attention should be paid to UA interference, when TRACP 5b is used for early diagnosis of cancer patients with bone metastasis, evaluation of the aggressiveness of osteosarcoma or prediction of survival in prostate cancer and breast cancer with bone metastases. PMID:26800211

  10. Large and small UAS for trace gas measurements in climate change studies

    NASA Astrophysics Data System (ADS)

    Elkins, J. W.; Moore, F. L.; Hintsa, E. J.; D'Amore, P.; Dutton, G. S.; Nance, J. D.; Hall, B. D.; Gao, R. S.

    2014-12-01

    NOAA and CIRES scientists have used Unmanned Aircraft Systems (UAS) for the measurement of trace gases involved in climate change since 2005, including both high altitude-long endurance (HALE UAS: NASA Altair & Global Hawk) and 1-m wingspan, small UAS (sUAS: SkyWisp, Aero). These gases include nitrous oxide (N2O), sulfur hexafluoride (SF6), methane (CH4), ozone (O3), carbon monoxide (CO), hydrogen (H2), and water vapor (H2O). In particular, atmospheric N2O is the third strongest greenhouse gas (326 parts-per-billion, ppb) and is the largest increasing stratospheric ozone depleting gas in terms of future emissions (~4 Tg N2O-N yr-1), primarily from fertilizer use. Atmospheric SF6, another potent greenhouse gas, is present globally at 8.2 parts-per-trillion (ppt) and growing at a rate of 0.25 ppt yr-1, and is used primarily in electrical power distribution. It is an excellent indicator of transport timescales (e.g., mean age) in the troposphere and stratosphere, because of its source distribution (~95% emitted in NH), long atmospheric lifetime (~600-3200 yr), and large relative atmospheric growth rate (~3%). We have developed atmospheric instrumentation for HALE platforms using a two-channel gas chromatograph with an ozone photometer and a water vapor tunable diode laser spectrometer. We are currently investigating a sUAS glider (SkyWisp) for balloon-assisted high altitude flights (30 km) and propeller driven sUAS (Aero) as a test bed for a new autopilot (Pixhawk, 3DRobotics). Our motivation for utilizing this autopilot is a low cost, open source autopilot alternative that can be used to return AirCore samples from high altitude balloons for quick laboratory analysis. The goal is a monitoring program to understand transport changes as a result of climate change during different seasons at many locations from a balloon-borne package (Moore et al., BAMS, pp. 147-155, Jan. 2014). The glider version of our open source autopilot system is also being considered for a

  11. Inter-level Scaffolding and Sequences of Representational Activities in Teaching a Chemical System with Graphical Simulations

    NASA Astrophysics Data System (ADS)

    Li, Na; Black, John B.

    2016-05-01

    Chemistry knowledge can be represented at macro-, micro- and symbolic levels, and learning a chemistry topic requires students to engage in multiple representational activities. This study focused on scaffolding for inter-level connection-making in learning chemistry knowledge with graphical simulations. We also tested whether different sequences of representational activities produced different student learning outcomes in learning a chemistry topic. A sample of 129 seventh graders participated in this study. In a simulation-based environment, participants completed three representational activities to learn several ideal gas law concepts. We conducted a 2 × 3 factorial design experiment. We compared two scaffolding conditions: (1) the inter-level scaffolding condition in which participants received inter-level questions and experienced the dynamic link function in the simulation-based environment and (2) the intra-level scaffolding condition in which participants received intra-level questions and did not experience the dynamic link function. We also compared three different sequences of representational activities: macro-symbolic-micro, micro-symbolic-macro and symbolic-micro-macro. For the scaffolding variable, we found that the inter-level scaffolding condition produced significantly better performance in both knowledge comprehension and application, compared to the intra-level scaffolding condition. For the sequence variable, we found that the macro-symbolic-micro sequence produced significantly better knowledge comprehension performance than the other two sequences; however, it did not benefit knowledge application performance. There was a trend that the treatment group who experienced inter-level scaffolding and the micro-symbolic-macro sequence achieved the best knowledge application performance.

  12. Draft Genome Sequence of Brevibacillus brevis DZQ7, a Plant Growth-Promoting Rhizobacterium with Broad-Spectrum Antimicrobial Activity.

    PubMed

    Hou, Qihui; Wang, Chengqiang; Hou, Xiaoyang; Xia, Zhilin; Ye, Jiangping; Liu, Kai; Liu, Hu; Wang, Jun; Guo, Haimeng; Yu, Xiaoning; Yang, Yanan; Du, Binghai; Ding, Yanqin

    2015-01-01

    Brevibacillus brevis DZQ7 is a plant growth-promoting rhizobacterium (PGPR) isolated from tobacco rhizosphere. Here, we report the draft genome sequence of B. brevis DZQ7. Several functional genes related to antimicrobial activity were identified in the genome. PMID:26294619

  13. Draft Genome Sequence of Streptomyces sp. JHA19, a Strain That Possesses β-d-Galactofuranosidase Activity

    PubMed Central

    Matsunaga, Emiko; Higuchi, Yujiro; Mori, Kazuki; Tashiro, Kosuke; Kuhara, Satoru

    2015-01-01

    By screening for microbes that exhibit β-d-galactofuranosidase (Galf-ase) activity, a Streptomyces sp. strain, named JHA19, was isolated from a soil sample from Kagawa University, Japan, in 2010. Here, we report the results of whole-genome shotgun sequencing and found that the strain has four predicted Galf-ase genes. PMID:26450739

  14. GCAT-SEEKquence: Genome Consortium for Active Teaching of Undergraduates through Increased Faculty Access to Next-Generation Sequencing Data

    PubMed Central

    Buonaccorsi, Vincent P.; Boyle, Michael D.; Grove, Deborah; Praul, Craig; Sakk, Eric; Stuart, Ash; Tobin, Tammy; Hosler, Jay; Carney, Susan L.; Engle, Michael J.; Overton, Barry E.; Newman, Jeffrey D.; Pizzorno, Marie; Powell, Jennifer R.; Trun, Nancy

    2011-01-01

    To transform undergraduate biology education, faculty need to provide opportunities for students to engage in the process of science. The rise of research approaches using next-generation (NextGen) sequencing has been impressive, but incorporation of such approaches into the undergraduate curriculum remains a major challenge. In this paper, we report proceedings of a National Science Foundation–funded workshop held July 11–14, 2011, at Juniata College. The purpose of the workshop was to develop a regional research coordination network for undergraduate biology education (RCN/UBE). The network is collaborating with a genome-sequencing core facility located at Pennsylvania State University (University Park) to enable undergraduate students and faculty at small colleges to access state-of-the-art sequencing technology. We aim to create a database of references, protocols, and raw data related to NextGen sequencing, and to find innovative ways to reduce costs related to sequencing and bioinformatics analysis. It was agreed that our regional network for NextGen sequencing could operate more effectively if it were partnered with the Genome Consortium for Active Teaching (GCAT) as a new arm of that consortium, entitled GCAT-SEEK(quence). This step would also permit the approach to be replicated elsewhere. PMID:22135368

  15. GCAT-SEEKquence: genome consortium for active teaching of undergraduates through increased faculty access to next-generation sequencing data.

    PubMed

    Buonaccorsi, Vincent P; Boyle, Michael D; Grove, Deborah; Praul, Craig; Sakk, Eric; Stuart, Ash; Tobin, Tammy; Hosler, Jay; Carney, Susan L; Engle, Michael J; Overton, Barry E; Newman, Jeffrey D; Pizzorno, Marie; Powell, Jennifer R; Trun, Nancy

    2011-01-01

    To transform undergraduate biology education, faculty need to provide opportunities for students to engage in the process of science. The rise of research approaches using next-generation (NextGen) sequencing has been impressive, but incorporation of such approaches into the undergraduate curriculum remains a major challenge. In this paper, we report proceedings of a National Science Foundation-funded workshop held July 11-14, 2011, at Juniata College. The purpose of the workshop was to develop a regional research coordination network for undergraduate biology education (RCN/UBE). The network is collaborating with a genome-sequencing core facility located at Pennsylvania State University (University Park) to enable undergraduate students and faculty at small colleges to access state-of-the-art sequencing technology. We aim to create a database of references, protocols, and raw data related to NextGen sequencing, and to find innovative ways to reduce costs related to sequencing and bioinformatics analysis. It was agreed that our regional network for NextGen sequencing could operate more effectively if it were partnered with the Genome Consortium for Active Teaching (GCAT) as a new arm of that consortium, entitled GCAT-SEEK(quence). This step would also permit the approach to be replicated elsewhere. PMID:22135368

  16. Monitoring Natural Occurring Asbestos in ophiolite sequences and derived soils: implication with human activities

    NASA Astrophysics Data System (ADS)

    Punturo, Rosalda; Bloise, Andrea; Cirrincione, Rosolino

    2016-04-01

    The present contribution focuses on soils that developed on serpentinite-metabasite bedrocks, which could potentially be rich in asbestos minerals and, as a consequence, have a negative impact on agricultural activity and on environmental quality. In order to investigate the natural occurrences of asbestos (NOA) on the surface of the soil formed from serpentinites and metabasite, we selected a study area located in Sila Piccola (Calabrian Peloritani Orogen, southern Italy), where previous studies highlighted the presence of asbestiform minerals within the large ophiolitic sequences that crop out (Punturo et al., 2015; Bloise et al., 2015). Agricultural soil samples have been collected mainly close to urban centres and characterized by using different analytical techniques such as X-ray powder diffraction (XRPD), transmission electron microscopy combined with energy dispersive spectrometry (TEM-EDS), thermogravimetry (TG) and differential scanning calorimetry (DSC) Results pointed out as all the collected soil samples contain serpentine minerals (e.g., chrysotile), asbestos amphiboles, clays, chlorite, muscovite, plagioclase and iron oxides in various amounts. Electron microscope images of the soils show that their contain a variety of aggregating agents such as organic matter and clay in which individual fibres of chrysotile and tremolite-actinolite are trapped. The investigation showed that both serpentinite and metabasite rocks act as a perennial source of contamination for the agriculture lands because of the high amount of tremolite-actinolite found in the studied soil samples developed on such lithotypes. Even if asbestiform minerals usually occur in aggregates which cannot be suspended in the air, agricultural activities such as plowing can destroy these soil aggregates with the creation of dust containing inhalable asbestos fibres that evolve into airborne increasing the exposure of population to them. Since the dispersion of fibres could be associated with

  17. BCR first exon sequences specifically activate the BCR/ABL tyrosine kinase oncogene of Philadelphia chromosome-positive human leukemias

    SciTech Connect

    Muller, A.J.; Witte, O.N. ); Young, J.C.; Pendergast, A.; Pondel, M. ); Landau, N.R.; Littman, D.R. )

    1991-04-01

    The c-abl proto-oncogene encodes a cytoplasmic tyrosine kinase which is homologous to the src gene product in its kinase domain and in the upstream kinase regulatory domains SH2 (src homology region 2) and SH3 (src homology region 3). The murine v-abl oncogene product has lost the SH3 domain as a consequence of N-terminal fusion of gag sequences. Deletion of the SH3 domain is sufficient to render the murine c-abl proto-oncogene product transforming when myristylated N-terminal membrane localization sequences are also present. In contrast, the human BCR/ABL oncogene of the Philadelphia chromosome translocation has an intact SH3 domain and its product is not myristylated at the N terminus. To analyze the contribution of BCR-encoded sequences to BCR/ABL-mediated transformation, the effects of a series of deletions and substitutions were assessed in fibroblast and hematopoietic-cell transformation assays. BCR first-exon sequences specifically potentiate transformation and tyrosine kinase activation when they are fused to the second exon of otherwise intact c-ABL. This suggests that BCR-encoded sequences specifically interfere with negative regulation of the ABL-encoded tyrosine kinase, which would represent a novel mechanism for the activation of nonreceptor tyrosine kinase-encoding proto-oncogenes.

  18. Biological activities of a synthetic peptide composed of two unlinked domains from a retroviral transmembrane protein sequence.

    PubMed Central

    Wegemer, D E; Kabat, K G; Kloetzer, W S

    1990-01-01

    We report several biological activities of a synthetic peptide whose sequence contains the highly conserved region of feline leukemia virus transmembrane protein (TM) synthetically linked to another short TM-derived sequence particularly rich in polar positive residues. This 29-amino-acid peptide blocked [3H]thymidine uptake 30 to 50% by concanavalin A-stimulated CD4(+)--but not CD8(+)-enriched murine splenocytes. Maximal suppression was detected at 12.5 micrograms (3 microM) to 75 micrograms (19 microM) per ml of growth medium; stimulation of [3H]thymidine uptake was observed at higher peptide concentrations. The synthetic peptide inhibited but did not stimulate [3H]thymidine uptake by mitogen-activated thymocytes and antibody production by splenocytes as determined in a liquid hemolytic plaque assay. Similarities are reported between a consensus sequence of diverse retroviral TMs and a region of alpha interferons shown by others to be important for antiviral and cytostatic properties. The TM sequence-derived synthetic peptide blocked in a nontoxic and sequence-specific manner the release of murine leukemia virus from two chronically infected cell lines. We suggest that some of the biological effects of retroviral TM are mediated through a common pathway shared with alpha interferons. Images PMID:1969500

  19. Sequence and structure-based prediction of fructosyltransferase activity for functional subclassification of fungal GH32 enzymes.

    PubMed

    Trollope, Kim M; van Wyk, Niël; Kotjomela, Momo A; Volschenk, Heinrich

    2015-12-01

    Sucrolytic enzymes catalyse sucrose hydrolysis or the synthesis of fructooligosaccharides (FOSs), a prebiotic in human and animal nutrition. FOS synthesis capacity differs between sucrolytic enzymes. Amino-acid-sequence-based classification of FOS synthesizing enzymes would greatly facilitate the in silico identification of novel catalysts, as large amounts of sequence data lie untapped. The development of a bioinformatics tool to rapidly distinguish between high-level FOSs synthesizing predominantly sucrose hydrolysing enzymes from fungal genomic data is presented. Sequence comparison of functionally characterized enzymes displaying low- and high-level FOS synthesis revealed conserved motifs unique to each group. New light is shed on the sequence context of active site residues in three previously identified conserved motifs. We characterized two enzymes predicted to possess low- and high-level FOS synthesis activities based on their conserved motif sequences. FOS data for the enzymes confirmed our successful prediction of their FOS synthesis capacity. Structural comparison of enzymes displaying low- and high-level FOS synthesis identified steric hindrance between nystose and a long loop region present only in low-level FOS synthesizers. This loop is proposed to limit the synthesis of FOS species with higher degrees of polymerization, a phenomenon observed among enzymes displaying low-level FOS synthesis. Conserved sequence motifs surrounding catalytic residues and a distant structural determinant were identifiers of FOS synthesis capacity and allow for functional annotation of sucrolytic enzymes directly from amino acid sequence. The tool presented may also be useful to study the structure-function relationships of β-fructofuranosidases by identifying mutations present in a group of closely related enzymes displaying similar function. PMID:26426731

  20. UAS Air Traffic Controller Acceptability Study. 2; Evaluating Detect and Avoid Technology and Communication Delays in Simulation

    NASA Technical Reports Server (NTRS)

    Comstock, James R., Jr.; Ghatas, Rania W.; Consiglio, Maria C.; Chamberlain, James P.; Hoffler, Keith D.

    2015-01-01

    This study evaluated the effects of communications delays and winds on air traffic controller ratings of acceptability of horizontal miss distances (HMDs) for encounters between Unmanned Aircraft Systems (UAS) and manned aircraft in a simulation of the Dallas-Ft. Worth (DFW) airspace. Fourteen encounters per hour were staged in the presence of moderate background traffic. Seven recently retired controllers with experience at DFW served as subjects. Guidance provided to the UAS pilots for maintaining a given HMD was provided by information from Detect and Avoid (DAA) self-separation algorithms (Stratway+) displayed on the Multi-Aircraft Control System. This guidance consisted of amber "bands" on the heading scale of the UAS navigation display indicating headings that would result in a loss of well clear between the UAS and nearby traffic. Winds tested were successfully handled by the DAA algorithms and did not affect the controller acceptability ratings of the HMDs. Voice communications delays for the UAS were also tested and included one-way delay times of 0, 400, 1200, and 1800 msec. For longer communications delays, there were changes in strategy and communications flow that were observed and reported by the controllers. The aim of this work is to provide useful information for guiding future rules and regulations applicable to flying UAS in the NAS. Information from this study will also be of value to the Radio Technical Commission for Aeronautics (RTCA) Special Committee 228 - Minimum Performance Standards for UAS.

  1. Localization of sequences responsible for trans-activation of the equine infectious anemia virus long terminal repeat.

    PubMed Central

    Sherman, L; Gazit, A; Yaniv, A; Kawakami, T; Dahlberg, J E; Tronick, S R

    1988-01-01

    We used the Escherichia coli chloramphenicol acetyltransferase gene (cat) to study sequences that influence expression of the equine infectious anemia virus (EIAV) genome. The EIAV long terminal repeat (LTR) directed CAT activity in a canine cell line, but at levels much lower than those achieved with other eucaryotic viral promoters. In the same cells infected with EIAV or cotransfected with molecularly cloned EIAV genomic DNA, LTR-directed activity was markedly enhanced. Comparison of cat mRNA and protein levels in these cells indicated that this trans-activating effect could be accounted for by a bimodal mechanism in which both transcriptional and posttranscriptional events are enhanced. trans-Activation but not promoter activity was abolished by deletion of the R-U5 region of the EIAV LTR. EIAV sequences responsible for the trans-activating function could be localized to a region encompassing the 3' and 5' termini of the pol and env genes, respectively (nucleotides 4474 to 5775). Interestingly, this stretch harbors a short open reading frame with some amino acid sequence similarity to the human immunodeficiency virus type I tat gene product. Images PMID:2824840

  2. Correlations between prefrontal neurons form a small-world network that optimizes the generation of multineuron sequences of activity.

    PubMed

    Luongo, Francisco J; Zimmerman, Chris A; Horn, Meryl E; Sohal, Vikaas S

    2016-05-01

    Sequential patterns of prefrontal activity are believed to mediate important behaviors, e.g., working memory, but it remains unclear exactly how they are generated. In accordance with previous studies of cortical circuits, we found that prefrontal microcircuits in young adult mice spontaneously generate many more stereotyped sequences of activity than expected by chance. However, the key question of whether these sequences depend on a specific functional organization within the cortical microcircuit, or emerge simply as a by-product of random interactions between neurons, remains unanswered. We observed that correlations between prefrontal neurons do follow a specific functional organization-they have a small-world topology. However, until now it has not been possible to directly link small-world topologies to specific circuit functions, e.g., sequence generation. Therefore, we developed a novel analysis to address this issue. Specifically, we constructed surrogate data sets that have identical levels of network activity at every point in time but nevertheless represent various network topologies. We call this method shuffling activity to rearrange correlations (SHARC). We found that only surrogate data sets based on the actual small-world functional organization of prefrontal microcircuits were able to reproduce the levels of sequences observed in actual data. As expected, small-world data sets contained many more sequences than surrogate data sets with randomly arranged correlations. Surprisingly, small-world data sets also outperformed data sets in which correlations were maximally clustered. Thus the small-world functional organization of cortical microcircuits, which effectively balances the random and maximally clustered regimes, is optimal for producing stereotyped sequential patterns of activity. PMID:26888108

  3. Draft genome sequence of Xanthomonas axonopodis pv. glycines 8ra possessing transcription activator-like effectors used for genetic engineering.

    PubMed

    Lee, Ju-Hoon; Shin, Hakdong; Park, Hye-Jee; Ryu, Sangryeol; Han, Sang-Wook

    2014-06-10

    Xanthomonas axonopodis pv. glycines 8ra is a causal agent of bacterial pustule disease in soybean. This bacterium possesses transcription activator-like (TAL) effectors which are useful for genetic/protein engineering applications in higher organisms including plants and humans. Here, we report that the draft genome sequence consists of 5,337,885-bp double-stranded DNA encoding 4674 open reading frames (ORFs) in 13 different contigs. This genome sequence would be useful in applications of TAL effectors in genetic engineering and in elucidating virulence factors against plants. PMID:24657734

  4. UAS Integration into the NAS: Detect and Avoid Display Evaluations in Support of SC-228 MOPS Development

    NASA Technical Reports Server (NTRS)

    Fern, Lisa; Rorie, Conrad; Shively, Jay

    2015-01-01

    This presentation provides an overview of the work the Human Systems Integration (HSI) sub-project has done on detect and avoid (DAA) displays while working on the UAS Integration into the NAS project. Much of the work has been used to support the ongoing development of minimum operational performance standards (MOPS) for UAS by RTCA Special Committee 228. The design and results of three different human-in-the-loop simulations are discussed, with particular emphasis on the role of the UAS pilot in the Self Separation Timeline.

  5. The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation.

    PubMed Central

    Bassi, G S; Murchie, A I; Lilley, D M

    1996-01-01

    The hammerhead ribozyme undergoes an ion-dependent folding process into the active conformation. We find that the folding can be blocked at specific stages by changes of sequence or functionality within the core. In the the absence of added metal ions, the global structure of the hammerhead is extended, with a large angle subtended between stems I and II. No core sequence changes appear to alter this geometry, consistent with an unstructured core under these conditions. Upon addition of low concentrations of magnesium ions, the hammerhead folds by an association of stems II and III, to include a large angle between them. This stage is inhibited or altered by mutations within the oligopurine sequence lying between stems II and III, and folding is completely prevented by an A14G mutation. Further increase in magnesium ion concentration brings about a second stage of folding in the natural sequence hammerhead, involving a reorientation of stem I, which rotates around into the same direction of stem II. Because this transition occurs over the same range of magnesium ion concentration over which the hammerhead ribozyme becomes active, it is likely that the final conformation is most closely related to the active form of the structure. Magnesium ion-dependent folding into this conformation is prevented by changes at G5, notably removal of the 2'-hydroxyl group and replacement of the base by cytidine. The ability to dissect the folding process by means of sequence changes suggests that two separate ion-dependent stages are involved in the folding of the hammerhead ribozyme into the active conformation. PMID:8752086

  6. Parameter Impact on Sharing Studies Between UAS CNPC Satellite Transmitters and Terrestrial Systems

    NASA Technical Reports Server (NTRS)

    Kerczewski, Robert J.; Wilson, Jeffrey D.; Bishop, William D.

    2015-01-01

    In order to provide a control and non-payload communication (CNPC) link for civil-use unmanned aircraft systems (UAS) when operating in beyond-line-of-sight (BLOS) conditions, satellite communication links are generally required. The International Civil Aviation Organization (ICAO) has determined that the CNPC link must operate over protected aviation safety spectrum allocations. Although a suitable allocation exists in the 5030-5091 MHz band, no satellites provide operations in this band and none are currently planned. In order to avoid a very lengthy delay in the deployment of UAS in BLOS conditions, it has been proposed to use existing satellites operating in the Fixed Satellite Service (FSS), of which many operate in several spectrum bands. Regulatory actions by the International Telecommunications Union (ITU) are needed to enable such a use on an international basis, and indeed Agenda Item (AI) 1.5 for the 2015 World Radiocommunication Conference (WRC) was established to decide on the enactment of possible regulatory provisions. As part of the preparation for AI 1.5, studies on the sharing FSS bands between existing services and CNPC for UAS are being contributed by NASA and others. These studies evaluate the potential impact of satellite CNPC transmitters operating from UAS on other in-band services, and on the potential impact of other in-band services on satellite CNPC receivers operating on UAS platforms. Such studies are made more complex by the inclusion of what are essentially moving FSS earth stations, compared to typical sharing studies between fixed elements. Hence, the process of determining the appropriate technical parameters for the studies meets with difficulty. In order to enable a sharing study to be completed in a less-than-infinite amount of time, the number of parameters exercised must be greatly limited. Therefore, understanding the impact of various parameter choices is accomplished through selectivity analyses. In the case of sharing

  7. Sequences affecting the V(D)J recombinational activity of the IgH intronic enhancer in a transgenic substrate.

    PubMed Central

    Fernex, C; Caillol, D; Capone, M; Krippl, B; Ferrier, P

    1994-01-01

    The immunoglobulin heavy chain intronic transcriptional enhancer (E mu) is part of a complex cis-regulatory DNA region which has notably been shown to modulate V(D)J rearrangements of associated variable gene segments. We have used recombination substrates comprised of the E mu enhancer together with various lengths of additional downstream mu sequences to assess the individual contribution of those sequences to the V(D)J recombinational regulatory activity. Surprisingly, in the absence of large amounts of mu sequences, substrate rearrangements were not detected in Southern blot analyses of the lymphoid tissues from independent transgenic mice, but were readily detectable following transfection into cultured pre-B cells. A short mu segment which includes matrix association regions (MARs) was not sufficient to restore high levels of rearrangements within the reporter transgenes. However, additional experiments demonstrated that the mu sequences are dispensable for V(D)J recombination in transgenic thymuses, implying a suppressive effect exerted by the vector sequences left in the transgenic insert, when they are attached near the E mu regulatory region. This suppression of V(D)J recombination, which correlates with an hypermethylation of the transgenes, is discussed in view of previously reported transgenic and gene targeting experiments. Images PMID:8139920

  8. Hyperspatial Thermal Imaging of Surface Hydrothermal Features at Pilgrim Hot Springs, Alaska using a small Unmanned Aerial System (sUAS)

    NASA Astrophysics Data System (ADS)

    Haselwimmer, C. E.; Wilson, R.; Upton, C.; Prakash, A.; Holdmann, G.; Walker, G.

    2013-12-01

    Thermal remote sensing provides a valuable tool for mapping and monitoring surface hydrothermal features associated with geothermal activity. The increasing availability of low-cost, small Unmanned Aerial Systems (sUAS) with integrated thermal imaging sensors offers a means to undertake very high spatial resolution (hyperspatial), quantitative thermal remote sensing of surface geothermal features in support of exploration and long-term monitoring efforts. Results from the deployment of a quadcopter sUAS equipped with a thermal camera over Pilgrim Hot Springs, Alaska for detailed mapping and heat flux estimation for hot springs, seeps, and thermal pools are presented. Hyperspatial thermal infrared imagery (4 cm pixels) was acquired over Pilgrim Hot Springs in July 2013 using a FLIR TAU 640 camera operating from an Aeryon Scout sUAS flying at an altitude of 40m. The registered and mosaicked thermal imagery is calibrated to surface temperature values using in-situ measurements of uniform blackbody tarps and the temperatures of geothermal and other surface pools acquired with a series of water temperature loggers. Interpretation of the pre-processed thermal imagery enables the delineation of hot springs, the extents of thermal pools, and the flow and mixing of individual geothermal outflow plumes with an unprecedented level of detail. Using the surface temperatures of thermal waters derived from the FLIR data and measured in-situ meteorological parameters the hot spring heat flux and outflow rate is calculated using a heat budget model for a subset of the thermal drainage. The heat flux/outflow rate estimates derived from the FLIR data are compared against in-situ measurements of the hot spring outflow rate recorded at the time of the thermal survey.

  9. The monogenetic kinetoplastid protozoan, Crithidia fasciculata, contains a transcriptionally active, multicopy mini-exon sequence.

    PubMed Central

    Muhich, M L; Hughes, D E; Simpson, A M; Simpson, L

    1987-01-01

    A repeated sequence from the Crithidia fasciculata nuclear genome has been isolated which is homologous to the mini-exon genes of other kinetoplastid protozoa. Sequence analysis of the 417 bp monomeric unit confirmed the presence of a 35 nt sequence within the repeat that is 77% homologous with the Trypanosoma brucei 35-mer mini-exon or spliced leader sequence. The repeat is present at approximately 250 copies per cell and is organized into one, or a few, large head to tail tandem clusters predominantly on a single chromosome. The mini-exon repeat unit hybridizes to a major 84 nt and a minor 87 nt poly (A)- steady state transcript, the first 35 nts of which comprise the mini-exon sequence found at the 5' end of mRNAs in several other kinetoplastid species. The 3'-termini of the transcripts map to positions on the DNA sense strand directly preceeding a stretch of 8 thymidine residues. Crithidia represents the most primitive kinetoplastid species which apparently possesses a discontinuous type of mRNA processing, implying that this represents a conserved feature in possibly all genera of kinetoplastid protozoa. Images PMID:3562248

  10. The Azorhizobium caulinodans nifA gene: identification of upstream-activating sequences including a new element, the 'anaerobox'.

    PubMed Central

    Nees, D W; Stein, P A; Ludwig, R A

    1988-01-01

    From nucleotide sequencing analyses, the A. caulinodans nifA gene seems to be under dual control by the Ntr (in response to available N) and Fnr (in response to available O2) transcriptional activation/repression systems. Because it fixes N2 in two contexts, the Ntr system might regulate A. caulinodans nif gene expression ex planta, while the Fnr system might similarly regulate in planta. As nifA upstream-activating elements, we have identified: (i) a gpNifA binding site allowing autogenous nifA regulation, (ii) an Ntr-dependent transcription start, presumably the target of gpNifA activation, and (iii) an "anaerobox" tetradecameric nucleotide sequence that is precisely conserved among O2 regulated enteric bacterial genes controlled by the gpFnr transcriptional activator. Because it is precisely positioned upstream of enteric bacterial transcriptional starts, the "anaerobox" sequence may constitute the gpFnr DNA binding site. If so, then a second, Ntr-independent nifA transcription start may exist. We have also deduced the A. caulinodans nifA open reading frame and have compared the gene product (gpNifA) with those of other N2-fixing organisms. These proteins exhibit strongly conserved motifs: (i) sites conserved among ATP-binding proteins, (ii) an interdomain linker region, and (iii) a C-terminal alpha-helix-turn-alpha-helix DNA binding site. PMID:3186446

  11. Role of two sequence motifs of mesencephalic astrocyte-derived neurotrophic factor in its survival-promoting activity

    PubMed Central

    Mätlik, K; Yu, Li-ying; Eesmaa, A; Hellman, M; Lindholm, P; Peränen, J; Galli, E; Anttila, J; Saarma, M; Permi, P; Airavaara, M; Arumäe, U

    2015-01-01

    Mesencephalic astrocyte-derived neurotrophic factor (MANF) is a prosurvival protein that protects the cells when applied intracellularly in vitro or extracellularly in vivo. Its protective mechanisms are poorly known. Here we studied the role of two short sequence motifs within the carboxy-(C) terminal domain of MANF in its neuroprotective activity: the CKGC sequence (a CXXC motif) that could be involved in redox reactions, and the C-terminal RTDL sequence, an endoplasmic reticulum (ER) retention signal. We mutated these motifs and analyzed the antiapoptotic effect and intracellular localization of these mutants of MANF when overexpressed in cultured sympathetic or sensory neurons. As an in vivo model for studying the effect of these mutants after their extracellular application, we used the rat model of cerebral ischemia. Even though we found no evidence for oxidoreductase activity of MANF, the mutation of CXXC motif completely abolished its protective effect, showing that this motif is crucial for both MANF's intracellular and extracellular activity. The RTDL motif was not needed for the neuroprotective activity of MANF after its extracellular application in the stroke model in vivo. However, in vitro the deletion of RTDL motif inactivated MANF in the sympathetic neurons where the mutant protein localized to Golgi, but not in the sensory neurons where the mutant localized to the ER, showing that intracellular MANF protects these peripheral neurons in vitro only when localized to the ER. PMID:26720341

  12. Activated neu oncogene sequences in primary tumors of the peripheral nervous system induced in rats by transplacental exposure to ethylnitrosourea

    SciTech Connect

    Perantoni, A.O.; Rice, J.M.; Reed, C.D.; Watatani, M.; Wenk, M.L.

    1987-09-01

    Neurogenic tumors were selectively induced in high incidence in F344 rats by a single transplacental exposure to the direct-acting alkylating agent N-ethyl-N-nitrosourea (EtNU). The authors prepared DNA for transfection of NIH 3T3 cells from primary glial tumors of the brain and form schwannomas of the cranial and spinal nerves that developed in the transplacentally exposed offspring between 20 and 40 weeks after birth. DNA preparations from 6 of 13 schwannomas, but not from normal liver, kidney, or intestine of tumor-bearing rats, transformed NIH 3T3 cells. NIH 3T3 clones transformed by schwannoma DNA contained rat repetitive DNA sequences, and all isolates contained rat neu oncogene sequences. A point mutation in the transmembrane region of the putative protein product of neu was identified in all six transformants and in the primary tumors from which they were derived as well as in 5 of 6 schwannomas tested that did not transform NIH 3T3 cells. Of 59 gliomas, only one yielded transforming DNA, and an activated N-ras oncogen was identified. The normal cellular neu sequence for the transmembrane region, but not the mutated sequence, was identified in DNA from all 11 gliomas surveyed by oligonucleotide hybridization. Activation of the neu oncogene, originally identified in cultured cell lines derived from EtNU-induced neurogenic tumors appears specifically associated with tumors of the peripheral nervous system in the F344 inbred strain.

  13. Analysis of DNA sequences which regulate the transcription of herpes simplex virus immediate early gene 3: DNA sequences required for enhancer-like activity and response to trans-activation by a virion polypeptide.

    PubMed Central

    Bzik, D J; Preston, C M

    1986-01-01

    The far upstream region of herpes simplex virus (HSV) immediate early (IE) gene 3 has previously been shown to increase gene expression in an enhancer-like manner, and to contain sequences which respond to stimulation of transcription by a virion polypeptide, Vmw65. To analyse the specific DNA sequences which mediate these functions, sequential deletions from each end of the far upstream region were made. The effects of the deletions on transcription in the absence or presence of the Vmw65 were measured by use of a transient expression assay. The enhancer-like activity was due to three separable elements, whereas two additional DNA regions were involved in the response to Vmw65. One of the responding elements corresponded to an AT-rich consensus (TAATGARATTC, where R = purine) present in all IE gene far upstream regions, and the other was a GA-rich sequence also present in IE genes 2 and 4/5. The TAATGARATTC element could mediate responsiveness to Vmw65 but it was fully active only in the presence of the GA-rich element. The GA-rich element was unable to confer a strong response alone but could activate an otherwise nonfunctional homologue of TAATGARATTC. PMID:3003700

  14. Analysis of DNA sequences which regulate the transcription of herpes simplex virus immediate early gene 3: DNA sequences required for enhancer-like activity and response to trans-activation by a virion polypeptide.

    PubMed

    Bzik, D J; Preston, C M

    1986-01-24

    The far upstream region of herpes simplex virus (HSV) immediate early (IE) gene 3 has previously been shown to increase gene expression in an enhancer-like manner, and to contain sequences which respond to stimulation of transcription by a virion polypeptide, Vmw65. To analyse the specific DNA sequences which mediate these functions, sequential deletions from each end of the far upstream region were made. The effects of the deletions on transcription in the absence or presence of the Vmw65 were measured by use of a transient expression assay. The enhancer-like activity was due to three separable elements, whereas two additional DNA regions were involved in the response to Vmw65. One of the responding elements corresponded to an AT-rich consensus (TAATGARATTC, where R = purine) present in all IE gene far upstream regions, and the other was a GA-rich sequence also present in IE genes 2 and 4/5. The TAATGARATTC element could mediate responsiveness to Vmw65 but it was fully active only in the presence of the GA-rich element. The GA-rich element was unable to confer a strong response alone but could activate an otherwise nonfunctional homologue of TAATGARATTC. PMID:3003700

  15. Identification of Rhopalosiphum Padi Virus 5' Untranslated Region Sequences Required for Cryptic Promoter Activity and Internal Ribosome Entry.

    PubMed

    Liu, Ming-Kun; Lin, Jie-Zue; Jinn, Tzyy-Rong; Chan, Hong-Lin; Wu, Tzong-Yuan

    2015-01-01

    The 579-nucleotide 5' untranslated region (5'UTR) of the Rhopalosiphum padi virus (RhPV) possesses a cross-kingdom internal ribosome entry site (IRES) activity that functions in insect, mammalian, and plant-derived in vitro translation systems, and six TAAG motifs within the DNA fragment encoding the RhPV 5'UTR were previously found to confer the RhPV 5'UTR with late promoter activity in baculovirus. In the present study, various truncated RhPV 5'UTR sequences were produced, and among them, a fragment of 110 bp ranging from nucleotides 309 to 418 was identified to be the shortest fragment responsible for the late promoter activity in baculovirus infected Sf21 cells. This 110 bp fragment contains a TAAG tandem repeat that retains more than 60% of the late promoter activity of the full length RhPV 5'UTR sequence. Further, IRES activity remained unchanged in all truncated RhPV 5'UTR constructs. Taken together, this novel 110 bp fragment having late promoter activity in baculovirus as well as IRES activity in mammalian cell, renders it a useful tool for the development of a "shuttle" bi-cistronic baculovirus gene expression and/or delivery vector. PMID:26184188

  16. Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project. NASA Contributions to the SARP WC Definition

    NASA Technical Reports Server (NTRS)

    Randall, Debra K.; Consiglio, Maria Cristina; Santiago, Confesor

    2014-01-01

    To better inform sense and avoid research needs and to understand ongoing investigation of potential solutions that ultimately lead to the assisting the FAA with their Congressional mandate to fly UAS in the NAS.

  17. Monoclonal antibodies raised against 167-180 aa sequence of human carbonic anhydrase XII inhibit its enzymatic activity.

    PubMed

    Dekaminaviciute, Dovile; Kairys, Visvaldas; Zilnyte, Milda; Petrikaite, Vilma; Jogaite, Vaida; Matuliene, Jurgita; Gudleviciene, Zivile; Vullo, Daniela; Supuran, Claudiu T; Zvirbliene, Aurelija

    2014-12-01

    Abstract Human carbonic anhydrase XII (CA XII) is a single-pass transmembrane protein with an extracellular catalytic domain. This enzyme is being recognized as a potential biomarker for different tumours. The current study was aimed to generate monoclonal antibodies (MAbs) neutralizing the enzymatic activity of CA XII. Bioinformatics analysis of CA XII structure revealed surface-exposed sequences located in a proximity of its catalytic centre. Two MAbs against the selected antigenic peptide spanning 167-180 aa sequence of CA XII were generated. The MAbs were reactive with recombinant catalytic domain of CA XII expressed either in E. coli or mammalian cells. Inhibitory activity of the MAbs was demonstrated by a stopped flow CO2 hydration assay. The study provides new data on the surface-exposed linear CA XII epitope that may serve as a target for inhibitory antibodies with a potential immunotherapeutic application. PMID:24400872

  18. Earth observation with MEO transmitters and UAS receivers: A potential utilization of Galileo constellation

    NASA Astrophysics Data System (ADS)

    D'Errico, Marco; Renga, Alfredo; Graziano, Maria Daniela

    2014-01-01

    Remote sensing application of Galileo upcoming constellation in the field of civil security is preliminarily analyzed, defining low resolution (25 m) and high resolution (7.5 m) working modes for a bistatic Synthetic Aperture Radar system utilizing Galileo satellites as transmitters and Unmanned Aerial Systems as receivers. Simulations offshore Somali coast and in a South Mediterranean Sea region showed that both low and high resolution acquisitions are feasible. For the low resolution mode a probability of successful image formation no matter the azimuth position of the receiving UAS has been estimated at nearly 100%. Whereas, for the high resolution mode it decreases to about 90%, which, if deemed unsatisfactory for the application, leads to the need for UAS to adapt its route to the actual Galileo satellite coverage.

  19. A UAS-based remote sensing platform for crop water stress detection

    NASA Astrophysics Data System (ADS)

    Zhang, H.; Wang, D.; Ayars, J. E.

    2014-12-01

    The remote detection of water stress in a biofuel crop field was investigated using canopy temperature measurements. An experimental trial was set up in the central valley of Maui, Hawaii, comprising different sugarcane varieties and irrigation regimes. An unmanned aerial system (UAS) was equipped with a FLIR A615 thermal camera to acquire canopy temperature imagery. Images were mosaicked and processed to show spatial temperature difference of entire field. A weather station was installed in a full irrigation plot to collect meteorological parameters. The sensitivity of canopy to air temperature difference and crop water stress index were investigated on detecting cop water stress levels. The results showed that low irrigation level treatment plots resulted in higher canopy temperatures compared to the high irrigation level treatment plots. Canopy temperatures also showed differences in water stress in different sugarcane varieties. The study demonstrated the feasibility of UAS-based thermal method to quantify plant water status of sugar canes used for biofuel crops.

  20. UAS in the NAS Air Traffic Controller Acceptability Study-1: The Effects of Horizontal Miss Distances on Simulated UAS and Manned Aircraft Encounters

    NASA Technical Reports Server (NTRS)

    Ghatas, Rania W.; Comstock, James R., Jr.; Consiglio, Maria C.; Chamberlain, James P.; Hoffler, Keith D.

    2015-01-01

    This study examined air traffic controller acceptability ratings based on the effects of differing horizontal miss distances (HMDs) for encounters between UAS and manned aircraft. In a simulation of the Dallas/Fort Worth (DFW) East-side airspace, the CAS-1 experiment at NASA Langley Research Center enlisted fourteen recently retired DFW air traffic controllers to rate well-clear volumes based on differing HMDs that ranged from 0.5 NM to 3.0 NM. The controllers were tasked with rating these HMDs from "too small" to "too excessive" on a defined, 1-5, scale and whether these distances caused any disruptions to the controller and/or to the surrounding traffic flow. Results of the study indicated a clear favoring towards a particular HMD range. Controller workload was also measured. Data from this experiment and subsequent experiments will play a crucial role in the FAA's establishment of rules, regulations, and procedures to safely and efficiently integrate UAS into the NAS.

  1. Meeting Learning Challenges: Working with Children Who Have Difficulty Following Sequence of Activities and Events

    ERIC Educational Resources Information Center

    Greenspan, Stanley I.

    2005-01-01

    In a question and answer advisory, the author gives advice to a preschool teacher working with a child who is having difficulties with sequencing, or the ability to put together a purposeful pattern of action, behavior, ideas, or thoughts. The author advises that through careful observation and appropriate learning opportunities, the children's…

  2. Temporal Sequence of Hemispheric Network Activation during Semantic Processing: A Functional Network Connectivity Analysis

    ERIC Educational Resources Information Center

    Assaf, Michal; Jagannathan, Kanchana; Calhoun, Vince; Kraut, Michael; Hart, John, Jr.; Pearlson, Godfrey

    2009-01-01

    To explore the temporal sequence of, and the relationship between, the left and right hemispheres (LH and RH) during semantic memory (SM) processing we identified the neural networks involved in the performance of functional MRI semantic object retrieval task (SORT) using group independent component analysis (ICA) in 47 healthy individuals. SORT…

  3. Assessing Spectrum Compatibility for Beyond-Line-of-Sight UAS Control and Non-Payload Communications

    NASA Technical Reports Server (NTRS)

    Kerczewski, Robert J.; Wilson, Jeffrey D.; Bishop, William D.

    2014-01-01

    In order to provide for the safe integration of unmanned aircraft systems (UAS) into the National Airspace System (NAS), the control and non-payload communications (CNPC) link must be highly reliable. A specific requirement is that it must operate using aviation safety radiofrequency spectrum. Two types of links are required - line-of-sight (LOS) using terrestrial-based communications and beyond-line-of-sight (BLOS) using satellite communications. The 2012 World Radiocommunication Conference (WRC-12) provided a suitable allocation for LOS CNPC spectrum in the 5030 to 5091 MHz band which, when combined with a previously existing allocation fulfills the LOS spectrum requirement. The 5030 to 5091 MHz band is also allocated for BLOS CNPC, but since a significant portion of that band is required for LOS CNPC, additional BLOS spectrum is required. More critically, there are no satellites in operation or in development to provide such services in that band. Hence BLOS CNPC cannot be provided in protected aviation spectrum under current conditions. To fill this gap and enable integration of UAS into the NAS, it has been proposed to allow CNPC to operate over certain Fixed Satellite Service (FSS) bands in which many satellites currently provide commercial services. To enable this, changes in international regulation must be enacted. Agenda Item 1.5 of the 2015 WRC examines the possible regulatory changes needed. As part of the examination process, sharing between potential UAS using satellite communications for BLOS CNPC and other services allocated to the FSS bands being considered must be studied. This paper reviews the technical requirements and approach being undertaken for these sharing studies, with emphasis on study of interference from UAS into digital repeater links operating under the Fixed Service allocation. These studies are being conducted by NASA Glenn Research Center.

  4. The Possibility of Using Images Obtained from the Uas in Cadastral Works

    NASA Astrophysics Data System (ADS)

    Kurczynski, Z.; Bakuła, K.; Karabin, M.; Kowalczyk, M.; Markiewicz, J. S.; Ostrowski, W.; Podlasiak, P.; Zawieska, D.

    2016-06-01

    Updating the cadastre requires much work carried out by surveying companies in countries that have still not solved the problem of updating the cadastral data. In terms of the required precision, these works are among the most accurate. This raises the question: to what extent may modern digital photogrammetric methods be useful in this process? The capabilities of photogrammetry have increased significantly after the introduction of digital aerial cameras and digital technologies. For the registration of cadastral objects, i.e., land parcels' boundaries and the outlines of buildings, very high-resolution aerial photographs can be used. The paper relates an attempt to use an alternative source of data for this task - the development of images acquired from UAS platforms. Multivariate mapping of cadastral parcels was implemented to determine the scope of the suitability of low altitude photos for the cadastre. In this study, images obtained from UAS with the GSD of 3 cm were collected for an area of a few square kilometres. Bundle adjustment of these data was processed with sub-pixel accuracy. This led to photogrammetric measurements being carried out and the provision of an orthophotomap (orthogonalized with a digital surface model from dense image matching of UAS images). Geometric data related to buildings were collected with two methods: stereoscopic and multi-photo measurements. Data related to parcels' boundaries were measured with monoplotting on an orthophotomap from low-altitude images. As reference field surveying data were used. The paper shows the potential and limits of the use of UAS in a process of updating cadastral data. It also gives recommendations when performing photogrammetric missions and presents the possible accuracy of this type of work.

  5. Intelligent Hardware-Enabled Sensor and Software Safety and Health Management for Autonomous UAS

    NASA Technical Reports Server (NTRS)

    Rozier, Kristin Y.; Schumann, Johann; Ippolito, Corey

    2015-01-01

    Unmanned Aerial Systems (UAS) can only be deployed if they can effectively complete their mission and respond to failures and uncertain environmental conditions while maintaining safety with respect to other aircraft as well as humans and property on the ground. We propose to design a real-time, onboard system health management (SHM) capability to continuously monitor essential system components such as sensors, software, and hardware systems for detection and diagnosis of failures and violations of safety or performance rules during the ight of a UAS. Our approach to SHM is three-pronged, providing: (1) real-time monitoring of sensor and software signals; (2) signal analysis, preprocessing, and advanced on-the- y temporal and Bayesian probabilistic fault diagnosis; (3) an unobtrusive, lightweight, read-only, low-power hardware realization using Field Programmable Gate Arrays (FPGAs) in order to avoid overburdening limited computing resources or costly re-certi cation of ight software due to instrumentation. No currently available SHM capabilities (or combinations of currently existing SHM capabilities) come anywhere close to satisfying these three criteria yet NASA will require such intelligent, hardwareenabled sensor and software safety and health management for introducing autonomous UAS into the National Airspace System (NAS). We propose a novel approach of creating modular building blocks for combining responsive runtime monitoring of temporal logic system safety requirements with model-based diagnosis and Bayesian network-based probabilistic analysis. Our proposed research program includes both developing this novel approach and demonstrating its capabilities using the NASA Swift UAS as a demonstration platform.

  6. UAS Integration into the NAS: HSI Full Mission Simulation Preliminary Results

    NASA Technical Reports Server (NTRS)

    Shively, Jay; Fern, Lisa; Rorie, Conrad

    2014-01-01

    The goal of the Full Mission Sim was to examine the effects of different command and control interfaces on UAS pilots' ability to respond to ATC commands and traffic advisories. Results suggest that higher levels of automation (i.e., waypoint-to-waypoint control interfaces) lead to longer initial response times and longer edit times. The findings demonstrate the importance of providing pilots with interfaces that facilitate their ability to get back "in the loop."

  7. Digital Elevation Model from Non-Metric Camera in Uas Compared with LIDAR Technology

    NASA Astrophysics Data System (ADS)

    Dayamit, O. M.; Pedro, M. F.; Ernesto, R. R.; Fernando, B. L.

    2015-08-01

    Digital Elevation Model (DEM) data as a representation of surface topography is highly demanded for use in spatial analysis and modelling. Aimed to that issue many methods of acquisition data and process it are developed, from traditional surveying until modern technology like LIDAR. On the other hands, in a past four year the development of Unamend Aerial System (UAS) aimed to Geomatic bring us the possibility to acquire data about surface by non-metric digital camera on board in a short time with good quality for some analysis. Data collectors have attracted tremendous attention on UAS due to possibility of the determination of volume changes over time, monitoring of the breakwaters, hydrological modelling including flood simulation, drainage networks, among others whose support in DEM for proper analysis. The DEM quality is considered as a combination of DEM accuracy and DEM suitability so; this paper is aimed to analyse the quality of the DEM from non-metric digital camera on UAS compared with a DEM from LIDAR corresponding to same geographic space covering 4 km2 in Artemisa province, Cuba. This area is in a frame of urban planning whose need to know the topographic characteristics in order to analyse hydrology behaviour and decide the best place for make roads, building and so on. Base on LIDAR technology is still more accurate method, it offer us a pattern for test DEM from non-metric digital camera on UAS, whose are much more flexible and bring a solution for many applications whose needs DEM of detail.

  8. Functional Requirements Document for HALE UAS Operations in the NAS: Step 1. Version 3

    NASA Technical Reports Server (NTRS)

    2006-01-01

    The purpose of this Functional Requirements Document (FRD) is to compile the functional requirements needed to achieve the Access 5 Vision of "operating High Altitude, Long Endurance (HALE) Unmanned Aircraft Systems (UAS) routinely, safely, and reliably in the national airspace system (NAS)" for Step 1. These functional requirements could support the development of a minimum set of policies, procedures and standards by the Federal Aviation Administration (FAA) and various standards organizations. It is envisioned that this comprehensive body of work will enable the FAA to establish and approve regulations to govern safe operation of UAS in the NAS on a routine or daily "file and fly" basis. The approach used to derive the functional requirements found within this FRD was to decompose the operational requirements and objectives identified within the Access 5 Concept of Operations (CONOPS) into the functions needed to routinely and safely operate a HALE UAS in the NAS. As a result, four major functional areas evolved to enable routine and safe UAS operations for an on-demand basis in the NAS. These four major functions are: Aviate, Navigate, Communicate, and Avoid Hazards. All of the functional requirements within this document can be directly traceable to one of these four major functions. Some functions, however, are traceable to several, or even all, of these four major functions. These cross-cutting functional requirements support the "Command / Control: function as well as the "Manage Contingencies" function. The requirements associated to these high-level functions and all of their supporting low-level functions are addressed in subsequent sections of this document.

  9. Enabling Civilian Low-Altitude Airspace and Unmanned Aerial System (UAS) Operations

    NASA Technical Reports Server (NTRS)

    Kopardekar, Parimal

    2014-01-01

    UAS operations will be safer if a UTM system is available to support the functions associated with Airspace management and geo-fencing (reduce risk of accidents, impact to other operations, and community concerns); Weather and severe wind integration (avoid severe weather areas based on prediction); Predict and manage congestion (mission safety);Terrain and man-made objects database and avoidance; Maintain safe separation (mission safety and assurance of other assets); Allow only authenticated operations (avoid unauthorized airspace use).

  10. Using a fixed-wing UAS to map snow depth distribution: an evaluation at peak accumulation

    NASA Astrophysics Data System (ADS)

    De Michele, Carlo; Avanzi, Francesco; Passoni, Daniele; Barzaghi, Riccardo; Pinto, Livio; Dosso, Paolo; Ghezzi, Antonio; Gianatti, Roberto; Della Vedova, Giacomo

    2016-03-01

    We investigate snow depth distribution at peak accumulation over a small Alpine area ( ˜ 0.3 km2) using photogrammetry-based surveys with a fixed-wing unmanned aerial system (UAS). These devices are growing in popularity as inexpensive alternatives to existing techniques within the field of remote sensing, but the assessment of their performance in Alpine areas to map snow depth distribution is still an open issue. Moreover, several existing attempts to map snow depth using UASs have used multi-rotor systems, since they guarantee higher stability than fixed-wing systems. We designed two field campaigns: during the first survey, performed at the beginning of the accumulation season, the digital elevation model of the ground was obtained. A second survey, at peak accumulation, enabled us to estimate the snow depth distribution as a difference with respect to the previous aerial survey. Moreover, the spatial integration of UAS snow depth measurements enabled us to estimate the snow volume accumulated over the area. On the same day, we collected 12 probe measurements of snow depth at random positions within the case study to perform a preliminary evaluation of UAS-based snow depth. Results reveal that UAS estimations of point snow depth present an average difference with reference to manual measurements equal to -0.073 m and a RMSE equal to 0.14 m. We have also explored how some basic snow depth statistics (e.g., mean, standard deviation, minima and maxima) change with sampling resolution (from 5 cm up to ˜ 100 m): for this case study, snow depth standard deviation (hence coefficient of variation) increases with decreasing cell size, but it stabilizes for resolutions smaller than 1 m. This provides a possible indication of sampling resolution in similar conditions.

  11. Recording and Modeling of Fortresses and Castles with Uas. Some Study Cases in Jaen (southern Spain)

    NASA Astrophysics Data System (ADS)

    Cardenal, J.; Pérez, J. L.; Mata, E.; Delgado, J.; Gómez-López, J. M.; Colomo, C.; Mozas, A.

    2016-06-01

    The province of Jaen (Southern Spain) has one of the largest concentrations of medieval fortresses of all Europe. Moreover ancient Iberian settlements located in oppida (fortified villages) and dated at VI-IV BC also are outstanding examples of historical heritage landmarks in the region. Most of these places are being restored or under documentation analysis to prevent their progressive deterioration. These places have several geometric characteristics in common, such as isolated locations, elongated shapes, largemedium size objects (in the order of tens to few hundred of meters), architectural features with vertical development (such as masonry or rammed earth walls, towers, gates, battlements, etc) or without it (walls, buildings or paths layouts at ground level). The object size, the required level of details and accuracy (of the order of some few cm) and both vertical and horizontal features imply that present UAS techniques can be advantageously used with respect to conventional aerial and terrestrial photogrammetric techniques. Vertical stereoscopic and oblique convergent UAS photogrammetric networks combined with processing techniques based on Structure from Motion (SfM) algorithms allow detailed low cost 2D/3D products. The proper selection of the UAS, camera, image acquisition mode (stop and/or cruising), the network and the processing software will determine the quality of final products and their usefulness in metric documentation, 3D modelization or museology. The efficiency of the use of UAS has been analyzed in several selected examples in Jaen (Burgalimar and Berrueco castles, Xth and XIIIth centuries, respectively, and the Iberian Puente Tablas oppidum, Vth-IVth centuries BC).

  12. Assessing Spectrum Compatibility for Beyond-Line-of-Sight UAS Control and Non-Payload Communications

    NASA Technical Reports Server (NTRS)

    Kerczewski, Robert J.; Wilson, Jeffrey D.; Bishop, William D.

    2014-01-01

    In order to provide for the safe integration of unmanned aircraft systems (UAS) into the National Airspace System (NAS), the control and non-payload communications (CNPC) link must be highly reliable. A specific requirement is that it must operate using aviation safety radiofrequency spectrum. Two types of links are required - line-of-sight (LOS) using terrestrial-based communications and beyond-line- of-sight (BLOS) using satellite communications. The 2012 World Radiocommunication Conference (WRC-12) provided a suitable allocation for LOS CNPC spectrum in the 5030-5091 MHz band which, when combined with a previously existing allocation fulfills the LOS spectrum requirement. The 5030- 5091 MHz band is also allocated for BLOS CNPC, but since a significant portion of that band is required for LOS CNPC, additional BLOS spectrum is required. More critically, there are no satellites in operation or in development to provide such services in that band. Hence BLOS CNPC cannot be provided in protected aviation spectrum under current conditions. To fill this gap and enable integration of UAS into the NAS, it has been proposed to allow CNPC to operate over certain Fixed Satellite Service (FSS) bands in which many satellites currently provide commercial services. To enable this, changes in international regulation must be enacted. Agenda Item 1.5 of the 2015 WRC examines the possible regulatory changes needed. As part of the examination process, sharing between potential UAS using satellite communications for BLOS CNPC and other services allocated to the FSS bands being considered must be studied. This paper reviews the technical requirements and approach being undertaken for these sharing studies, with emphasis on study of interference from UAS into digital repeater links operating under the Fixed Service allocation. These studies are being conducted by NASA Glenn Research Center.

  13. Identifying New Drug Targets for Potent Phospholipase D Inhibitors: Combining Sequence Alignment, Molecular Docking, and Enzyme Activity/Binding Assays.

    PubMed

    Djakpa, Helene; Kulkarni, Aditya; Barrows-Murphy, Scheneque; Miller, Greg; Zhou, Weihong; Cho, Hyejin; Török, Béla; Stieglitz, Kimberly

    2016-05-01

    Phospholipase D enzymes cleave phospholipid substrates generating choline and phosphatidic acid. Phospholipase D from Streptomyces chromofuscus is a non-HKD (histidine, lysine, and aspartic acid) phospholipase D as the enzyme is more similar to members of the diverse family of metallo-phosphodiesterase/phosphatase enzymes than phospholipase D enzymes with active site HKD repeats. A highly efficient library of phospholipase D inhibitors based on 1,3-disubstituted-4-amino-pyrazolopyrimidine core structure was utilized to evaluate the inhibition of purified S. chromofuscus phospholipase D. The molecules exhibited inhibition of phospholipase D activity (IC50 ) in the nanomolar range with monomeric substrate diC4 PC and micromolar range with phospholipid micelles and vesicles. Binding studies with vesicle substrate and phospholipase D strongly indicate that these inhibitors directly block enzyme vesicle binding. Following these compelling results as a starting point, sequence searches and alignments with S. chromofuscus phospholipase D have identified potential new drug targets. Using AutoDock, inhibitors were docked into the enzymes selected from sequence searches and alignments (when 3D co-ordinates were available) and results analyzed to develop next-generation inhibitors for new targets. In vitro enzyme activity assays with several human phosphatases demonstrated that the predictive protocol was accurate. The strategy of combining sequence comparison, docking, and high-throughput screening assays has helped to identify new drug targets and provided some insight into how to make potential inhibitors more specific to desired targets. PMID:26691755

  14. Sequence-directed nucleosome-depletion is sufficient to activate transcription from a yeast core promoter in vivo.

    PubMed

    Ichikawa, Yuichi; Morohashi, Nobuyuki; Tomita, Nobuyuki; Mitchell, Aaron P; Kurumizaka, Hitoshi; Shimizu, Mitsuhiro

    2016-07-22

    Nucleosome-depleted regions (NDRs) (also called nucleosome-free regions or NFRs) are often found in the promoter regions of many yeast genes, and are formed by multiple mechanisms, including the binding of activators and enhancers, the actions of chromatin remodeling complexes, and the specific DNA sequences themselves. However, it remains unclear whether NDR formation per se is essential for transcriptional activation. Here, we examined the relationship between nucleosome organization and gene expression using a defined yeast reporter system, consisting of the CYC1 minimal core promoter and the lacZ gene. We introduced simple repeated sequences that should be either incorporated in nucleosomes or excluded from nucleosomes in the site upstream of the TATA boxes. The (CTG)12, (GAA)12 and (TGTAGG)6 inserts were incorporated into a positioned nucleosome in the core promoter region, and did not affect the reporter gene expression. In contrast, the insertion of (CGG)12, (TTAGGG)6, (A)34 or (CG)8 induced lacZ expression by 10-20 fold. Nucleosome mapping analyses revealed that the inserts that induced the reporter gene expression prevented nucleosome formation, and created an NDR upstream of the TATA boxes. Thus, our results demonstrated that NDR formation dictated by DNA sequences is sufficient for transcriptional activation from the core promoter in vivo. PMID:27208777

  15. Variable sequencing is actively maintained in a well learned motor skill.

    PubMed

    Warren, Timothy L; Charlesworth, Jonathan D; Tumer, Evren C; Brainard, Michael S

    2012-10-31

    Variation in sequencing of actions occurs in many natural behaviors, yet how such variation is maintained is poorly understood. We investigated maintenance of sequence variation in adult Bengalese finch song, a learned skill with rendition-to-rendition variation in the sequencing of discrete syllables (i.e., syllable "b" might transition to "c" with 70% probability and to "d" with 30% probability). We found that probabilities of transitions ordinarily remain stable but could be modified by delivering aversive noise bursts following one transition (e.g., "b→c") but not the alternative (e.g., "b→d"). Such differential reinforcement induced gradual, adaptive decreases in probabilities of targeted transitions and compensatory increases in alternative transitions. Thus, the normal stability of transition probabilities does not reflect hardwired premotor circuitry. While all variable transitions could be modified by differential reinforcement, some were less readily modified than others; these were cases that exhibited more alternation between possible transitions than predicted by chance (i.e., "b→d " would tend to follow "b→c " and vice versa). These history-dependent transitions were less modifiable than more stochastic transitions. Similarly, highly stereotyped transitions (which are completely predictable) were not modifiable. This suggests that stochastically generated variability is crucial for sequence modification. Finally, we found that, when reinforcement ceased, birds gradually restored transition probabilities to their baseline values. Hence, the nervous system retains a representation of baseline probabilities and has the impetus to restore them. Together, our results indicate that variable sequencing in a motor skill can reflect an end point of learning that is stably maintained via continual self-monitoring. PMID:23115179

  16. Gardnerella vaginalis Subgroups Defined by cpn60 Sequencing and Sialidase Activity in Isolates from Canada, Belgium and Kenya.

    PubMed

    Schellenberg, John J; Paramel Jayaprakash, Teenus; Withana Gamage, Niradha; Patterson, Mo H; Vaneechoutte, Mario; Hill, Janet E

    2016-01-01

    Increased abundance of Gardnerella vaginalis and sialidase activity in vaginal fluid is associated with bacterial vaginosis (BV), a common but poorly understood clinical entity associated with poor reproductive health outcomes. Since most women are colonized with G. vaginalis, its status as a normal member of the vaginal microbiota or pathogen causing BV remains controversial, and numerous classification schemes have been described. Since 2005, sequencing of the chaperonin-60 universal target (cpn60 UT) has distinguished four subgroups in isolate collections, clone libraries and deep sequencing datasets. To clarify potential clinical and diagnostic significance of cpn60 subgroups, we undertook phenotypic and molecular characterization of 112 G. vaginalis isolates from three continents. A total of 36 subgroup A, 33 B, 35 C and 8 D isolates were identified through phylogenetic analysis of cpn60 sequences as corresponding to four "clades" identified in a recently published study, based on sequencing 473 genes across 17 isolates. cpn60 subgroups were compared with other previously described molecular methods for classification of Gardnerella subgroups, including amplified ribosomal DNA restriction analysis (ARDRA) and real-time PCR assays designed to quantify subgroups in vaginal samples. Although two ARDRA patterns were observed in isolates, each was observed in three cpn60 subgroups (A/B/D and B/C/D). Real-time PCR assays corroborated cpn60 subgroups overall, but 13 isolates from subgroups A, B and D were negative in all assays. A putative sialidase gene was detected in all subgroup B, C and D isolates, but only in a single subgroup A isolate. In contrast, sialidase activity was observed in all subgroup B isolates, 3 (9%) subgroup C isolates and no subgroup A or D isolates. These observations suggest distinct roles for G. vaginalis subgroups in BV pathogenesis. We conclude that cpn60 UT sequencing is a robust approach for defining G. vaginalis subgroups within the

  17. Gardnerella vaginalis Subgroups Defined by cpn60 Sequencing and Sialidase Activity in Isolates from Canada, Belgium and Kenya

    PubMed Central

    Schellenberg, John J.; Paramel Jayaprakash, Teenus; Withana Gamage, Niradha; Patterson, Mo H.; Vaneechoutte, Mario; Hill, Janet E.

    2016-01-01

    Increased abundance of Gardnerella vaginalis and sialidase activity in vaginal fluid is associated with bacterial vaginosis (BV), a common but poorly understood clinical entity associated with poor reproductive health outcomes. Since most women are colonized with G. vaginalis, its status as a normal member of the vaginal microbiota or pathogen causing BV remains controversial, and numerous classification schemes have been described. Since 2005, sequencing of the chaperonin-60 universal target (cpn60 UT) has distinguished four subgroups in isolate collections, clone libraries and deep sequencing datasets. To clarify potential clinical and diagnostic significance of cpn60 subgroups, we undertook phenotypic and molecular characterization of 112 G. vaginalis isolates from three continents. A total of 36 subgroup A, 33 B, 35 C and 8 D isolates were identified through phylogenetic analysis of cpn60 sequences as corresponding to four “clades” identified in a recently published study, based on sequencing 473 genes across 17 isolates. cpn60 subgroups were compared with other previously described molecular methods for classification of Gardnerella subgroups, including amplified ribosomal DNA restriction analysis (ARDRA) and real-time PCR assays designed to quantify subgroups in vaginal samples. Although two ARDRA patterns were observed in isolates, each was observed in three cpn60 subgroups (A/B/D and B/C/D). Real-time PCR assays corroborated cpn60 subgroups overall, but 13 isolates from subgroups A, B and D were negative in all assays. A putative sialidase gene was detected in all subgroup B, C and D isolates, but only in a single subgroup A isolate. In contrast, sialidase activity was observed in all subgroup B isolates, 3 (9%) subgroup C isolates and no subgroup A or D isolates. These observations suggest distinct roles for G. vaginalis subgroups in BV pathogenesis. We conclude that cpn60 UT sequencing is a robust approach for defining G. vaginalis subgroups within

  18. Calibration of UAS imagery inside and outside of shadows for improved vegetation index computation

    NASA Astrophysics Data System (ADS)

    Bondi, Elizabeth; Salvaggio, Carl; Montanaro, Matthew; Gerace, Aaron D.

    2016-05-01

    Vegetation health and vigor can be assessed with data from multi- and hyperspectral airborne and satellite- borne sensors using index products such as the normalized difference vegetation index (NDVI). Recent advances in unmanned aerial systems (UAS) technology have created the opportunity to access these same image data sets in a more cost effective manner with higher temporal and spatial resolution. Another advantage of these systems includes the ability to gather data in almost any weather condition, including complete cloud cover, when data has not been available before from traditional platforms. The ability to collect in these varied conditions, meteorological and temporal, will present researchers and producers with many new challenges. Particularly, cloud shadows and self-shadowing by vegetation must be taken into consideration in imagery collected from UAS platforms to avoid variation in NDVI due to changes in illumination within a single scene, and between collection flights. A workflow is presented to compensate for variations in vegetation indices due to shadows and variation in illumination levels in high resolution imagery collected from UAS platforms. Other calibration methods that producers may currently be utilizing produce NDVI products that still contain shadow boundaries and variations due to illumination, whereas the final NDVI mosaic from this workflow does not.

  19. Experiments with Uas Imagery for Automatic Modeling of Power Line 3d Geometry

    NASA Astrophysics Data System (ADS)

    Jóźków, G.; Vander Jagt, B.; Toth, C.

    2015-08-01

    The ideal mapping technology for transmission line inspection is the airborne LiDAR executed from helicopter platforms. It allows for full 3D geometry extraction in highly automated manner. Large scale aerial images can be also used for this purpose, however, automation is possible only for finding transmission line positions (2D geometry), and the sag needs to be estimated manually. For longer lines, these techniques are less expensive than ground surveys, yet they are still expensive. UAS technology has the potential to reduce these costs, especially if using inexpensive platforms with consumer grade cameras. This study investigates the potential of using high resolution UAS imagery for automatic modeling of transmission line 3D geometry. The key point of this experiment was to employ dense matching algorithms to appropriately acquired UAS images to have points created also on wires. This allowed to model the 3D geometry of transmission lines similarly to LiDAR acquired point clouds. Results showed that the transmission line modeling is possible with a high internal accuracy for both, horizontal and vertical directions, even when wires were represented by a partial (sparse) point cloud.

  20. Use of UAS to Support Management in Precision Agriculture: The AggieAir Experience

    NASA Astrophysics Data System (ADS)

    McKee, M.; Torres-Rua, A. F.; ELarab, M.; Hassan Esfahani, L.; Jensen, A.

    2015-12-01

    Remote sensing applications for precision agriculture depend on acquiring actionable information at high spatial resolution and at a temporal frequency appropriate for timely responses. Unmanned aerial systems (UAS) are capable of providing such imagery for use in various applications for precision agriculture (yield estimation, evapotranspiration, etc.). AggieAirTM, a UAS platform and sensory array, was designed and developed at Utah State University to acquire high-resolution imagery (0.15m -0.6 m) in the visual, near infrared, red edge, and thermal infrared spectra. Spectral data obtained from AggieAir are used to develop soil moisture, plant chlorophyll, leaf nitrogen and actual evapotranspiration estimates to support management in precision agriculture. This presentation will focus on experience in using the AggieAir system to provide information products of possible interest in precision agriculture. The discussion will include information about the direction and rate of development of UAS technology and the current and anticipated future state of the regulatory environment for use of these systems in the U.S.

  1. NOAA and NASA's use of Unmanned Aerial Systems (UAS) in Tropical Cyclones: Recent successes and a future path forward

    NASA Astrophysics Data System (ADS)

    Cione, J. J.; Turlington, P. N.

    2008-05-01

    Since 2003, NOAA and NASA have worked together to establish low-altitude long endurance unmanned aircraft observations in tropical cyclones (TC). Due to the severe safety risks associated with manned reconnaissance missions, continuous observations within the high wind-storm environment at very low altitudes (<300m) are only possible using Unmanned Aerial Systems (UAS). Being able to routinely obtain these critical low level observations are likely to have immediate payoffs (e.g. a more accurate depiction of the maximum surface winds asccoicated with TCs) as well as longer term benefits (e.g. an improved physical understanding and enhanced future forecasts of TC intensity change). Over the past 2 years, NOAA and NASA have experienced two successful UAS missions into tropical storm Opheila (2005) and Hurricane Noel (2007). In both instances, the UAS obtained continuous, near-surface thermodynamic and wind observations at altitudes as low as 350m (Ophelia) and 82m (Noel). In Noel, UAS records for endurance (17.5h) and minimum altitude (82m) in a hurricane were established. Analyses incorporating UAS observations from both storms will be presented. In addition, NOAA and NASA's upcoming UAS plans for the 2008 hurricane season (and beyond) will be discussed.

  2. Three-dimensional motion estimation using genetic algorithms from image sequence in an active stereo vision system

    NASA Astrophysics Data System (ADS)

    Dipanda, Albert; Ajot, Jerome; Woo, Sanghyuk

    2003-06-01

    This paper proposes a method for estimating 3D rigid motion parameters from an image sequence of a moving object. The 3D surface measurement is achieved using an active stereovision system composed of a camera and a light projector, which illuminates objects to be analyzed by a pyramid-shaped laser beam. By associating the laser rays and the spots in the 2D image, the 3D points corresponding to these spots are reconstructed. Each image of the sequence provides a set of 3D points, which is modeled by a B-spline surface. Therefore, estimating the motion between two images of the sequence boils down to matching two B-spline surfaces. We consider the matching environment as an optimization problem and find the optimal solution using Genetic Algorithms. A chromosome is encoded by concatenating six binary coded parameters, the three angles of rotation and the x-axis, y-axis and z-axis translations. We have defined an original fitness function to calculate the similarity measure between two surfaces. The matching process is performed iteratively: the number of points to be matched grows as the process advances and results are refined until convergence. Experimental results with a real image sequence are presented to show the effectiveness of the method.

  3. Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoter.

    PubMed Central

    MacMorris, M; Broverman, S; Greenspoon, S; Lea, K; Madej, C; Blumenthal, T; Spieth, J

    1992-01-01

    The Caenorhabditis elegans vitellogenin genes are subject to sex-, stage-, and tissue-specific regulation: they are expressed solely in the adult hermaphrodite intestine. Comparative sequence analysis of the DNA immediately upstream of these genes revealed the presence of two repeated heptameric elements, vit promoter element 1 (VPE1) and VPE2. VPE1 has the consensus sequence TGTCAAT, while VPE2, CTGATAA, shares the recognition sequence of the GATA family of transcription factors. We report here a functional analysis of the VPEs within the 5'-flanking region of the vit-2 gene using stable transgenic lines. The 247 upstream bp containing the VPEs was sufficient for high-level, regulated expression. Furthermore, none of the four deletion mutations or eight point mutations tested resulted in expression of the reporter gene in larvae, males, or inappropriate hermaphrodite tissues. Mutation of the VPE1 closest to the TATA box inactivated the promoter, in spite of the fact that four additional close matches to the VPE1 consensus sequence are present within the 5'-flanking 200 bp. Each of these upstream VPE1-like sequences could be mutated without loss of high-level transgene expression, suggesting that if these VPE1 sequences play a role in regulating vit-2, their effects are more subtle. A site-directed mutation in the overlapping VPE1 and VPE2 at -98 was sufficient to inactivate the promoter, indicating that one or both of these VPEs must be present for activation of vit-2 transcription. Similarly, a small perturbation of the VPE2 at -150 resulted in reduction of fp155 expression, while a more extensive mutation in this element eliminated expression. On the other hand, deletion of this VPE2 and all upstream DNA still permitted correctly regulated expression, although at a very low level, suggesting that this VPE2 performs an important role in activation of vit-2 expression but may not be absolutely required. The results, taken together, demonstrate that both VPE1 and

  4. Regulation of vitellogenin gene expression in transgenic Caenorhabditis elegans: short sequences required for activation of the vit-2 promoter.

    PubMed

    MacMorris, M; Broverman, S; Greenspoon, S; Lea, K; Madej, C; Blumenthal, T; Spieth, J

    1992-04-01

    The Caenorhabditis elegans vitellogenin genes are subject to sex-, stage-, and tissue-specific regulation: they are expressed solely in the adult hermaphrodite intestine. Comparative sequence analysis of the DNA immediately upstream of these genes revealed the presence of two repeated heptameric elements, vit promoter element 1 (VPE1) and VPE2. VPE1 has the consensus sequence TGTCAAT, while VPE2, CTGATAA, shares the recognition sequence of the GATA family of transcription factors. We report here a functional analysis of the VPEs within the 5'-flanking region of the vit-2 gene using stable transgenic lines. The 247 upstream bp containing the VPEs was sufficient for high-level, regulated expression. Furthermore, none of the four deletion mutations or eight point mutations tested resulted in expression of the reporter gene in larvae, males, or inappropriate hermaphrodite tissues. Mutation of the VPE1 closest to the TATA box inactivated the promoter, in spite of the fact that four additional close matches to the VPE1 consensus sequence are present within the 5'-flanking 200 bp. Each of these upstream VPE1-like sequences could be mutated without loss of high-level transgene expression, suggesting that if these VPE1 sequences play a role in regulating vit-2, their effects are more subtle. A site-directed mutation in the overlapping VPE1 and VPE2 at -98 was sufficient to inactivate the promoter, indicating that one or both of these VPEs must be present for activation of vit-2 transcription. Similarly, a small perturbation of the VPE2 at -150 resulted in reduction of fp155 expression, while a more extensive mutation in this element eliminated expression. On the other hand, deletion of this VPE2 and all upstream DNA still permitted correctly regulated expression, although at a very low level, suggesting that this VPE2 performs an important role in activation of vit-2 expression but may not be absolutely required. The results, taken together, demonstrate that both VPE1 and

  5. Stability and sequence-specific DNA binding of activation-labile mutants of the human glucocorticoid receptor

    SciTech Connect

    Elsasser, M.S.; Eisen, L.P.; Harmon, J.M. ); Riegel, A.T. )

    1991-11-19

    The stability and DNA-binding properties of activation-labile (act{sup 1}) human glucocorticoid receptors (hGRs) from the glucocorticoid-resistant mutant 3R7.6TG.4 were investigated. These receptors are able to bind reversible associating ligands with normal affinity and specificity, but become unstable during attempted activation to the DNA binding form. Affinity labeling and immunochemical analysis demonstrated that act{sup 1} receptors are not preferentially proteolyzed during attempted activation. In addition, analysis of binding to calf thymus DNA showed that after loss of ligand, act{sup 1} receptors retain the ability to bind to DNA nonspecifically. A 370 bp MMTV promoter fragment containing multiple GREs and an upstream 342 bp fragment lacking GRE sequences were used to assess the binding of act{sup 1} hGR to specific DNA sequences. Immunoadsorption of hGR-DNA complexes after incubation with {sup 32}P-end-labeled fragments showed that both normal and act{sup 1} both normal and act{sup 1} hGRs could be blocked with a synthetic oligonucleotide containing a perfect palindromic GRE, but not with an oligonucleotide in which the GRE was replaced by and ERE. Analogous results were obtained for normal and act{sup 1} hGR activated in the absence of ligand, or after incubation with the glucocorticoid antagonist RU 38486. These results suggest that sequence-specific binding of the hGR does not require the presence of bound ligand and suggest a role for the ligand in trans-activation of hormonally responsive genes.

  6. Design and analysis of structure-activity relationship of novel antimicrobial peptides derived from the conserved sequence of cecropin.

    PubMed

    Hao, Gang; Shi, Yong-Hui; Han, Jing-Hui; Li, Qi-Hui; Tang, Ya-Li; Le, Guo-Wei

    2008-03-01

    We have de novo designed four antimicrobial peptides AMP-A/B/C/D, the 51-residues peptides, which are based on the conserved sequence of cecropin. In the present study, the four peptides were chemically synthesized and their activities assayed. Their secondary structure, amphipathic property, electric field distribution and transmembrane domain were subsequently predicted by bioinformatics tools. Finally, the structure-activity relationship was analyzed from the results of activity experiments and prediction. The results of activity experiments indicated that AMP-B/C/D clearly possessed excellent broad-spectrum activity against bacteria, whereas AMP-A was almost inactive against most of the bacterial strains tested. AMP-B/C/D showed more potent activity against Gram-positive bacteria than against Gram-negative bacteria. By utilizing bioinformatics analysis tools, we found that the secondary structure of the four cation peptides was mainly alpha-helix, and the result of CD spectrum also displayed that all the peptides had considerable alpha-helix in the presence of either 50% TFE or SDS micelles. AMP-C showed much better activity than other peptides against most of the bacteria tested, owing to its remarkable cation property and the amphipathic character of its N-terminal. The study of structure-activity relationship of the designed peptides confirmed that amphipathic structure and high net positive charge were prerequisites for maintaining their activities. PMID:17929330

  7. Active populations of rare microbes in oceanic environments as revealed by bromodeoxyuridine incorporation and 454 tag sequencing.

    PubMed

    Hamasaki, Koji; Taniguchi, Akito; Tada, Yuya; Kaneko, Ryo; Miki, Takeshi

    2016-02-01

    The "rare biosphere" consisting of thousands of low-abundance microbial taxa is important as a seed bank or a gene pool to maintain microbial functional redundancy and robustness of the ecosystem. Here we investigated contemporaneous growth of diverse microbial taxa including rare taxa and determined their variability in environmentally distinctive locations along a north-south transect in the Pacific Ocean in order to assess which taxa were actively growing and how environmental factors influenced bacterial community structures. A bromodeoxyuridine-labeling technique in combination with PCR amplicon pyrosequencing of 16S rRNA genes gave 215-793 OTUs from 1200 to 3500 unique sequences in the total communities and 175-299 OTUs nearly 860 to 1800 sequences in the active communities. Unexpectedly, many of the active OTUs were not detected in the total fractions. Among these active but rare OTUs, some taxa (2-4% of rare OTUs) showed much higher abundance (>0.10% of total reads) in the active fraction than in the total fraction, suggesting that their contribution to bacterial community productivity or growth was much larger than that expected from their standing stocks at each location. An ordination plot by the principal component analysis presented that bacterial community compositions among 4 sampling locations and between total and active fractions were distinctive with each other. A redundancy analysis revealed that the variability of community compositions significantly correlated to seawater temperature and dissolved oxygen concentration. Also, a variation partitioning analysis showed that the environmental factors explained 49% of the variability of community compositions and the distance only explained 4.0% of its variability. These results implied very dynamic change of community structures due to environmental filtering. The active bacterial populations are more diverse and spread further in rare biosphere than we have ever seen. This study implied that rare

  8. Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence

    PubMed Central

    Parmar, Jyotsana J.; Marko, John F.; Padinhateeri, Ranjith

    2014-01-01

    We investigate how DNA sequence, ATP-dependent chromatin remodeling and nucleosome-depleted ‘barriers’ co-operate to determine the kinetics of nucleosome organization, in a stochastic model of nucleosome positioning and dynamics. We find that ‘statistical’ positioning of nucleosomes against ‘barriers’, hypothesized to control chromatin structure near transcription start sites, requires active remodeling and therefore cannot be described using equilibrium statistical mechanics. We show that, unlike steady-state occupancy, DNA site exposure kinetics near a barrier is dominated by DNA sequence rather than by proximity to the barrier itself. The timescale for formation of positioning patterns near barriers is proportional to the timescale for active nucleosome eviction. We also show that there are strong gene-to-gene variations in nucleosome positioning near barriers, which are eliminated by averaging over many genes. Our results suggest that measurement of nucleosome kinetics can reveal information about sequence-dependent regulation that is not apparent in steady-state nucleosome occupancy. PMID:24068556

  9. Cloning, sequence analysis, and expression of the large subunit of the human lymphocyte activation antigen 4F2

    SciTech Connect

    Lumadue, J.A.; Glick, A.B.; Ruddle, F.H.

    1987-12-01

    Among the earliest expressed antigens on the surface of activated human lymphocytes is the surface antigen 4F2. The authors have used DNA-mediated gene transfer and fluorescence-activated cell sorting to obtain cell lines that contain the gene encoding the large subunit of the human 4F2 antigen in a mouse L-cell background. Human DNAs cloned from these cell lines were subsequently used as hybridization probes to isolate a full-length cDNA clone expressing 4F2. Sequence analysis of the coding region has revealed an amino acid sequence of 529 residues. Hydrophobicity plotting has predicted a probable structure for the protein that includes an external carboxyl terminus, an internal leader sequence, a single hydrophobic transmembrane domain, and two possible membrane-associated domains. The 4F2 cDNA detects a single 1.8-kilobase mRNA in T-cell and B-cell lines. RNA gel blot analysis of RNA derived from quiescent and serum-stimulated Swiss 3T3 fibroblasts reveals a cell-cycle modulation of 4F2 gene expression: the mRNA is present in quiescent fibroblasts but increases 8-fold 24-36 hr after stimulation, at the time of maximal DNA synthesis.

  10. Deduction of upstream sequences of Xanthomonas campestris flagellar genes responding to transcription activation by FleQ

    SciTech Connect

    Hu, R.-M.; Yang, T.-C.; Yang, S.-H.; Tseng, Y.-H. . E-mail: yhtseng@chtai.ctc.edu.tw

    2005-10-07

    Xanthomonas campestris pv. campestris (Xcc), a close relative to Pseudomonas aeruginosa, is the pathogen causing black rot in cruciferous plants. In P. aeruginosa, FleQ serves as a cognate activator of {sigma}{sup 54} in transcription from several {sigma}{sup 54}-dependent promoters of flagellar genes. These P. aeruginosa promoters have been analyzed for FleQ-binding sequences; however, no consensus was deduced. Xcc, although lacks fleSR, has a fleQ homologue residing among over 40 contiguously clustered flagellar genes. A fleQ mutant, Xc17fleQ, constructed by insertional mutation is deficient in FleQ protein, non-flagellated, and immobile. Transcriptional fusion assays on six putative {sigma}{sup 54}-dependent promoters of the flagellar genes, fliE, fliQ, fliL, flgG, flgB, and flhF, indicated that each of them is also FleQ dependent. Each of these promoters has a sequence with weak consensus to 5'-gaaacCCgccgCcgctTt-3', immediately upstream of the predicted {sigma}{sup 54}-binding site, with an imperfect inverted repeat containing a GC-rich center flanked by several A and T at 5'- and 3'-ends, respectively. Replacing this region in fliE promoter with a HindIII recognition sequence abolished the transcription, indicating that this region responds to transcription activation by FleQ.

  11. Use of passive UAS imaging to measure biophysical parameters in a southern Rocky Mountain subalpine forest

    NASA Astrophysics Data System (ADS)

    Caldwell, M. K.; Sloan, J.; Mladinich, C. S.; Wessman, C. A.

    2013-12-01

    Unmanned Aerial Systems (UAS) can provide detailed, fine spatial resolution imagery for ecological uses not otherwise obtainable through standard methods. The use of UAS imagery for ecology is a rapidly -evolving field, where the study of forest landscape ecology can be augmented using UAS imagery to scale and validate biophysical data from field measurements to spaceborne observations. High resolution imagery provided by UAS (30 cm2 pixels) offers detailed canopy cover and forest structure data in a time efficient and inexpensive manner. Using a GoPro Hero2 (2 mm focal length) camera mounted in the nose cone of a Raven unmanned system, we collected aerial and thermal data monthly during the summer 2013, over two subalpine forests in the Southern Rocky Mountains in Colorado. These forests are dominated by lodgepole pine (Pinus ponderosae) and have experienced insect-driven (primarily mountain pine beetle; MPB, Dendroctonus ponderosae) mortality. Objectives of this study include observations of forest health variables such as canopy water content (CWC) from thermal imagery and leaf area index (LAI), biomass and forest productivity from the Normalized Difference Vegetation Index (NDVI) from UAS imagery. Observations were, validated with ground measurements. Images were processed using a combination of AgiSoft Photoscan professional software and ENVI remote imaging software. We utilized the software Leaf Area Index Calculator (LAIC) developed by Córcoles et al. (2013) for calculating LAI from digital images and modified to conform to leaf area of needle-leaf trees as in Chen and Cihlar (1996) . LAIC uses a K-means cluster analysis to decipher the RGB levels for each pixel and distinguish between green aboveground vegetation and other materials, and project leaf area per unit of ground surface area (i.e. half total needle surface area per unit area). Preliminary LAIC UAS data shows summer average LAI was 3.8 in the most dense forest stands and 2.95 in less dense

  12. Airborne Collision Detection and Avoidance for Small UAS Sense and Avoid Systems

    NASA Astrophysics Data System (ADS)

    Sahawneh, Laith Rasmi

    The increasing demand to integrate unmanned aircraft systems (UAS) into the national airspace is motivated by the rapid growth of the UAS industry, especially small UAS weighing less than 55 pounds. Their use however has been limited by the Federal Aviation Administration regulations due to collision risk they pose, safety and regulatory concerns. Therefore, before civil aviation authorities can approve routine UAS flight operations, UAS must be equipped with sense-and-avoid technology comparable to the see-and-avoid requirements for manned aircraft. The sense-and-avoid problem includes several important aspects including regulatory and system-level requirements, design specifications and performance standards, intruder detecting and tracking, collision risk assessment, and finally path planning and collision avoidance. In this dissertation, our primary focus is on developing an collision detection, risk assessment and avoidance framework that is computationally affordable and suitable to run on-board small UAS. To begin with, we address the minimum sensing range for the sense-and-avoid (SAA) system. We present an approximate close form analytical solution to compute the minimum sensing range to safely avoid an imminent collision. The approach is then demonstrated using a radar sensor prototype that achieves the required minimum sensing range. In the area of collision risk assessment and collision prediction, we present two approaches to estimate the collision risk of an encounter scenario. The first is a deterministic approach similar to those been developed for Traffic Alert and Collision Avoidance (TCAS) in manned aviation. We extend the approach to account for uncertainties of state estimates by deriving an analytic expression to propagate the error variance using Taylor series approximation. To address unanticipated intruders maneuvers, we propose an innovative probabilistic approach to quantify likely intruder trajectories and estimate the probability of

  13. Airborne Collision Detection and Avoidance for Small UAS Sense and Avoid Systems

    NASA Astrophysics Data System (ADS)

    Sahawneh, Laith Rasmi

    The increasing demand to integrate unmanned aircraft systems (UAS) into the national airspace is motivated by the rapid growth of the UAS industry, especially small UAS weighing less than 55 pounds. Their use however has been limited by the Federal Aviation Administration regulations due to collision risk they pose, safety and regulatory concerns. Therefore, before civil aviation authorities can approve routine UAS flight operations, UAS must be equipped with sense-and-avoid technology comparable to the see-and-avoid requirements for manned aircraft. The sense-and-avoid problem includes several important aspects including regulatory and system-level requirements, design specifications and performance standards, intruder detecting and tracking, collision risk assessment, and finally path planning and collision avoidance. In this dissertation, our primary focus is on developing an collision detection, risk assessment and avoidance framework that is computationally affordable and suitable to run on-board small UAS. To begin with, we address the minimum sensing range for the sense-and-avoid (SAA) system. We present an approximate close form analytical solution to compute the minimum sensing range to safely avoid an imminent collision. The approach is then demonstrated using a radar sensor prototype that achieves the required minimum sensing range. In the area of collision risk assessment and collision prediction, we present two approaches to estimate the collision risk of an encounter scenario. The first is a deterministic approach similar to those been developed for Traffic Alert and Collision Avoidance (TCAS) in manned aviation. We extend the approach to account for uncertainties of state estimates by deriving an analytic expression to propagate the error variance using Taylor series approximation. To address unanticipated intruders maneuvers, we propose an innovative probabilistic approach to quantify likely intruder trajectories and estimate the probability of

  14. Next-Generation Sequencing of Apoptotic DNA Breakpoints Reveals Association with Actively Transcribed Genes and Gene Translocations

    PubMed Central

    Fullwood, Melissa J.; Lee, Joanne; Lin, Lifang; Li, Guoliang; Huss, Mikael; Ng, Patrick; Sung, Wing-Kin; Shenolikar, Shirish

    2011-01-01

    DNA fragmentation is a well-recognized hallmark of apoptosis. However, the precise DNA sequences cleaved during apoptosis triggered by distinct mechanisms remain unclear. We used next-generation sequencing of DNA fragments generated in Actinomycin D-treated human HL-60 leukemic cells to generate a high-throughput, global map of apoptotic DNA breakpoints. These data highlighted that DNA breaks are non-random and show a significant association with active genes and open chromatin regions. We noted that transcription factor binding sites were also enriched within a fraction of the apoptotic breakpoints. Interestingly, extensive apoptotic cleavage was noted within genes that are frequently translocated in human cancers. We speculate that the non-random fragmentation of DNA during apoptosis may contribute to gene translocations and the development of human cancers. PMID:22087219

  15. Sequence elements in the human osteocalcin gene confer basal activation and inducible response to hormonal vitamin D sub 3

    SciTech Connect

    Kerner, S.A.; Scott, R.A.; Pike, J.W. )

    1989-06-01

    Osteoblast-specific expression of the bone protein osteocalcin is controlled at the transcriptional level by the steroid hormone 1{alpha},25-dihydroxyvitamin D{sub 3}. As this protein may represent a marker for bone activity in human disease, the authors examined the regulation of its expression at the molecular level by evaluating human osteocalcin gene promoter function. They describe regions within the promoter that contribute to basal expression of the gene in osteoblast-like cells in culture. Further, they define a 21-base-pair DNA element with the sequence 5{prime}-GTGACTCACCGGGTGAACGGG-3{prime}, which acts in cis to mediate 1{alpha},25-dihydroxyvitamin D{sub 3} inducibility of the osteocalcin gene. This response element bears sequence similarity with other short DNA segments, particularly those for estrogen and thyroid hormone, which act together with their respective trans-acting receptors to modulate gene transcription.

  16. Ribonuclease "XlaI," an activity from Xenopus laevis oocytes that excises intervening sequences from yeast transfer ribonucleic acid precursors.

    PubMed Central

    Otsuka, A; de Paolis, A; Tocchini-Valentini, G P

    1981-01-01

    A ribonuclease (RNase) activity, RNase "XlaI," responsible for the excision of intervening sequences from two yeast transfer ribonucleic acid (tRNA) precursors, pre-tRNA(Tyr) and pre-tRNA(3Leu), has been purified 54-fold from nuclear extracts of Xenopus laevis oocytes. The RNase preparation is essentially free of contaminating RNase. A quantitative assay for RNase XlaI was developed, and the reaction products were characterized. RNase XlaI cleavage sites in the yeast tRNA precursors were identical to those made by yeast extracts (including 3'-phosphate and 5'-hydroxyl termini). Cleavage of pre-tRNA(3Leu) by RNase XlaI and subsequent ligation of the half-tRNA molecules do not require removal of the 5' leader or 3' trailer sequences. Images PMID:6765601

  17. Uric Acid Produces an Inflammatory Response through Activation of NF-κB in the Hypothalamus: Implications for the Pathogenesis of Metabolic Disorders

    PubMed Central

    Lu, Wenjie; Xu, Youzhi; Shao, Xiaoni; Gao, Fabao; Li, Yan; Hu, Jing; Zuo, Zeping; Shao, Xue; Zhou, Liangxue; Zhao, Yinglan; Cen, Xiaobo

    2015-01-01

    Epidemiological studies have shown that an elevated uric acid (UA) level predicts the development of metabolic syndrome and diabetes; however, there is no direct evidence of this, and the underlying mechanism remains unclear. Here, we showed that a high-UA diet triggered the expression of pro-inflammatory cytokines, activated the NF-κB pathway, and increased gliosis in the hypothalamus. Intracerebroventricular injection of UA induced hypothalamic inflammation and reactive gliosis, whereas these effects were markedly ameliorated by the inhibition of NF-κB. Moreover, magnetic resonance imaging confirmed that hyperuricemia in rodents and humans was associated with gliosis in the mediobasal hypothalamus. Importantly, the rats administered UA exhibited dyslipidemia and glucose intolerance, which were probably mediated by hypothalamic inflammation and hypothalamic neuroendocrine alterations. These results suggest that UA can cause hypothalamic inflammation via NF-κB signaling. Our findings provide a potential therapeutic strategy for UA-induced metabolic disorders. PMID:26179594

  18. Sequence-Specific Modifications Enhance the Broad-Spectrum Antiviral Response Activated by RIG-I Agonists

    PubMed Central

    Chiang, Cindy; Beljanski, Vladimir; Yin, Kevin; Olagnier, David; Ben Yebdri, Fethia; Steel, Courtney; Goulet, Marie-Line; DeFilippis, Victor R.; Streblow, Daniel N.; Haddad, Elias K.; Trautmann, Lydie; Ross, Ted; Lin, Rongtuan

    2015-01-01

    ABSTRACT The cytosolic RIG-I (retinoic acid-inducible gene I) receptor plays a pivotal role in the initiation of the immune response against RNA virus infection by recognizing short 5′-triphosphate (5′ppp)-containing viral RNA and activating the host antiviral innate response. In the present study, we generated novel 5′ppp RIG-I agonists of varieous lengths, structures, and sequences and evaluated the generation of the antiviral and inflammatory responses in human epithelial A549 cells, human innate immune primary cells, and murine models of influenza and chikungunya viral pathogenesis. A 99-nucleotide, uridine-rich hairpin 5′pppRNA termed M8 stimulated an extensive and robust interferon response compared to other modified 5′pppRNA structures, RIG-I aptamers, or poly(I·C). Interestingly, manipulation of the primary RNA sequence alone was sufficient to modulate antiviral activity and inflammatory response, in a manner dependent exclusively on RIG-I and independent of MDA5 and TLR3. Both prophylactic and therapeutic administration of M8 effectively inhibited influenza virus and dengue virus replication in vitro. Furthermore, multiple strains of influenza virus that were resistant to oseltamivir, an FDA-approved therapeutic treatment for influenza, were highly sensitive to inhibition by M8. Finally, prophylactic M8 treatment in vivo prolonged survival and reduced lung viral titers of mice challenged with influenza virus, as well as reducing chikungunya virus-associated foot swelling and viral load. Altogether, these results demonstrate that 5′pppRNA can be rationally designed to achieve a maximal RIG-I-mediated protective antiviral response against human-pathogenic RNA viruses. IMPORTANCE The development of novel therapeutics to treat human-pathogenic RNA viral infections is an important goal to reduce spread of infection and to improve human health and safety. This study investigated the design of an RNA agonist with enhanced antiviral and inflammatory

  19. The active site of O-GlcNAc transferase imposes constraints on substrate sequence

    PubMed Central

    Rafie, Karim; Blair, David E.; Borodkin, Vladimir S.; Albarbarawi, Osama; van Aalten, Daan M. F.

    2016-01-01

    O-GlcNAc transferase (OGT) glycosylates a diverse range of intracellular proteins with O-linked N-acetylglucosamine (O-GlcNAc), an essential and dynamic post-translational modification in metazoa. Although this enzyme modifies hundreds of proteins with O-GlcNAc, it is not understood how OGT achieves substrate specificity. In this study, we describe the application of a high-throughput OGT assay on a library of peptides. The sites of O-GlcNAc modification were mapped by ETD-mass spectrometry, and found to correlate with previously detected O-GlcNAc sites. Crystal structures of four acceptor peptides in complex with human OGT suggest that a combination of size and conformational restriction defines sequence specificity in the −3 to +2 subsites. This work reveals that while the N-terminal TPR repeats of hOGT may play a role in substrate recognition, the sequence restriction imposed by the peptide-binding site makes a significant contribution to O-GlcNAc site specificity. PMID:26237509

  20. Science sequence design

    NASA Technical Reports Server (NTRS)

    Koskela, P. E.; Bollman, W. E.; Freeman, J. E.; Helton, M. R.; Reichert, R. J.; Travers, E. S.; Zawacki, S. J.

    1973-01-01

    The activities of the following members of the Navigation Team are recorded: the Science Sequence Design Group, responsible for preparing the final science sequence designs; the Advanced Sequence Planning Group, responsible for sequence planning; and the Science Recommendation Team (SRT) representatives, responsible for conducting the necessary sequence design interfaces with the teams during the mission. The interface task included science support in both advance planning and daily operations. Science sequences designed during the mission are also discussed.

  1. Novel proline-hydroxyproline glycopeptides from the dandelion (Taraxacum officinale Wigg.) flowers: de novo sequencing and biological activity.

    PubMed

    Astafieva, Alexandra A; Enyenihi, Atim A; Rogozhin, Eugene A; Kozlov, Sergey A; Grishin, Eugene V; Odintsova, Tatyana I; Zubarev, Roman A; Egorov, Tsezi A

    2015-09-01

    Two novel homologous peptides named ToHyp1 and ToHyp2 that show no similarity to any known proteins were isolated from Taraxacum officinale Wigg. flowers by multidimensional liquid chromatography. Amino acid and mass spectrometry analyses demonstrated that the peptides have unusual structure: they are cysteine-free, proline-hydroxyproline-rich and post-translationally glycosylated by pentoses, with 5 carbohydrates in ToHyp2 and 10 in ToHyp1. The ToHyp2 peptide with a monoisotopic molecular mass of 4350.3Da was completely sequenced by a combination of Edman degradation and de novo sequencing via top down multistage collision induced dissociation (CID) and higher energy dissociation (HCD) tandem mass spectrometry (MS(n)). ToHyp2 consists of 35 amino acids, contains eighteen proline residues, of which 8 prolines are hydroxylated. The peptide displays antifungal activity and inhibits growth of Gram-positive and Gram-negative bacteria. We further showed that carbohydrate moieties have no significant impact on the peptide structure, but are important for antifungal activity although not absolutely necessary. The deglycosylated ToHyp2 peptide was less active against the susceptible fungus Bipolaris sorokiniana than the native peptide. Unique structural features of the ToHyp2 peptide place it into a new family of plant defense peptides. The discovery of ToHyp peptides in T. officinale flowers expands the repertoire of molecules of plant origin with practical applications. PMID:26259198

  2. Production, purification, sequencing and activity spectra of mutacins D-123.1 and F-59.1

    PubMed Central

    2011-01-01

    Background The increase in bacterial resistance to antibiotics impels the development of new anti-bacterial substances. Mutacins (bacteriocins) are small antibacterial peptides produced by Streptococcus mutans showing activity against bacterial pathogens. The objective of the study was to produce and characterise additional mutacins in order to find new useful antibacterial substances. Results Mutacin F-59.1 was produced in liquid media by S. mutans 59.1 while production of mutacin D-123.1 by S. mutans 123.1 was obtained in semi-solid media. Mutacins were purified by hydrophobic chromatography. The amino acid sequences of the mutacins were obtained by Edman degradation and their molecular mass was determined by mass spectrometry. Mutacin F-59.1 consists of 25 amino acids, containing the YGNGV consensus sequence of pediocin-like bacteriocins with a molecular mass calculated at 2719 Da. Mutacin D-123.1 has an identical molecular mass (2364 Da) with the same first 9 amino acids as mutacin I. Mutacins D-123.1 and F-59.1 have wide activity spectra inhibiting human and food-borne pathogens. The lantibiotic mutacin D-123.1 possesses a broader activity spectrum than mutacin F-59.1 against the bacterial strains tested. Conclusion Mutacin F-59.1 is the first pediocin-like bacteriocin identified and characterised that is produced by Streptococcus mutans. Mutacin D-123.1 appears to be identical to mutacin I previously identified in different strains of S. mutans. PMID:21477375

  3. A Portable Hot Spot Recognition Loop Transfers Sequence Preferences from APOBEC Family Members to Activation-induced Cytidine Deaminase*

    PubMed Central

    Kohli, Rahul M.; Abrams, Shaun R.; Gajula, Kiran S.; Maul, Robert W.; Gearhart, Patricia J.; Stivers, James T.

    2009-01-01

    Enzymes of the AID/APOBEC family, characterized by the targeted deamination of cytosine to generate uracil within DNA, mediate numerous critical immune responses. One family member, activation-induced cytidine deaminase (AID), selectively introduces uracil into antibody variable and switch regions, promoting antibody diversity through somatic hypermutation or class switching. Other family members, including APOBEC3F and APOBEC3G, play an important role in retroviral defense by acting on viral reverse transcripts. These enzymes are distinguished from one another by targeting cytosine within different DNA sequence contexts; however, the reason for these differences is not known. Here, we report the identification of a recognition loop of 9–11 amino acids that contributes significantly to the distinct sequence motifs of individual family members. When this recognition loop is grafted from the donor APOBEC3F or 3G proteins into the acceptor scaffold of AID, the mutational signature of AID changes toward that of the donor proteins. These loop-graft mutants of AID provide useful tools for dissecting the biological impact of DNA sequence preferences upon generation of antibody diversity, and the results have implications for the evolution and specialization of the AID/APOBEC family. PMID:19561087

  4. Steroidogenic activity of a peptide specified by the reversed sequence of corticotropin mRNA.

    PubMed Central

    Clarke, B L; Blalock, J E

    1990-01-01

    The molecular recognition theory predicts that a reversed (3'----5') reading of an mRNA should yield a peptide that is structurally and functionally similar to that specified in the 5'----3' direction. We tested this idea by synthesizing a corticotropin (ACTH) analogue using a reverse reading of bovine mRNA for ACTH-(1-24). This peptide, designated ACTH-3'----5', had a similar hydropathic profile to native ACTH-5'----3' but had only 30% sequence homology and eight different charge substitutions. ACTH-3'----5' specifically bound to the surface of mouse Y-1 adrenal cells and to polyclonal anti-ACTH antibody. Additionally, ACTH-3'----5' stimulated cAMP synthesis and steroidogenesis in adrenal cells. These findings show that ACTH-3'----5' mimics the corticotropic properties of native ACTH, thereby further validating the molecular recognition theory. PMID:2175911

  5. RNA sequencing from neural ensembles activated during fear conditioning in the mouse temporal association cortex.

    PubMed

    Cho, Jin-Hyung; Huang, Ben S; Gray, Jesse M

    2016-01-01

    The stable formation of remote fear memories is thought to require neuronal gene induction in cortical ensembles that are activated during learning. However, the set of genes expressed specifically in these activated ensembles is not known; knowledge of such transcriptional profiles may offer insights into the molecular program underlying stable memory formation. Here we use RNA-Seq to identify genes whose expression is enriched in activated cortical ensembles labeled during associative fear learning. We first establish that mouse temporal association cortex (TeA) is required for remote recall of auditory fear memories. We then perform RNA-Seq in TeA neurons that are labeled by the activity reporter Arc-dVenus during learning. We identify 944 genes with enriched expression in Arc-dVenus+ neurons. These genes include markers of L2/3, L5b, and L6 excitatory neurons but not glial or inhibitory markers, confirming Arc-dVenus to be an excitatory neuron-specific but non-layer-specific activity reporter. Cross comparisons to other transcriptional profiles show that 125 of the enriched genes are also activity-regulated in vitro or induced by visual stimulus in the visual cortex, suggesting that they may be induced generally in the cortex in an experience-dependent fashion. Prominent among the enriched genes are those encoding potassium channels that down-regulate neuronal activity, suggesting the possibility that part of the molecular program induced by fear conditioning may initiate homeostatic plasticity. PMID:27557751

  6. RNA sequencing from neural ensembles activated during fear conditioning in the mouse temporal association cortex

    PubMed Central

    Cho, Jin-Hyung; Huang, Ben S.; Gray, Jesse M.

    2016-01-01

    The stable formation of remote fear memories is thought to require neuronal gene induction in cortical ensembles that are activated during learning. However, the set of genes expressed specifically in these activated ensembles is not known; knowledge of such transcriptional profiles may offer insights into the molecular program underlying stable memory formation. Here we use RNA-Seq to identify genes whose expression is enriched in activated cortical ensembles labeled during associative fear learning. We first establish that mouse temporal association cortex (TeA) is required for remote recall of auditory fear memories. We then perform RNA-Seq in TeA neurons that are labeled by the activity reporter Arc-dVenus during learning. We identify 944 genes with enriched expression in Arc-dVenus+ neurons. These genes include markers of L2/3, L5b, and L6 excitatory neurons but not glial or inhibitory markers, confirming Arc-dVenus to be an excitatory neuron-specific but non-layer-specific activity reporter. Cross comparisons to other transcriptional profiles show that 125 of the enriched genes are also activity-regulated in vitro or induced by visual stimulus in the visual cortex, suggesting that they may be induced generally in the cortex in an experience-dependent fashion. Prominent among the enriched genes are those encoding potassium channels that down-regulate neuronal activity, suggesting the possibility that part of the molecular program induced by fear conditioning may initiate homeostatic plasticity. PMID:27557751

  7. Flagellar transcriptional activators FlbB and FlaI: gene sequences and 5' consensus sequences of operons under FlbB and FlaI control.

    PubMed Central

    Bartlett, D H; Frantz, B B; Matsumura, P

    1988-01-01

    The regulation of the expression of the operons in the flagella-chemotaxis regulon in Escherichia coli has been shown to be a highly ordered cascade which closely parallels the assembly of the flagellar structure and the chemotaxis machinery (T. Iino, Annu. Rev. Genet. 11:161-182, 1977; Y. Komeda, J. Bacteriol. 168: 1315-1318). The master operon, flbB, has been sequenced, and one of its gene products (FlaI) has been identified. On the basis of the deduced amino acid sequence, the FlbB protein has similarity to an alternate sigma factor which is responsible for expression of flagella in Bacillus subtilis. In addition, we have sequenced the 5' regions of a number of flagellar operons and compared these sequences with the 5' region of flagellar operons directly and indirectly under FlbB and FlaI control. We found both a consensus sequence which has been shown to be in all other flagellar operons (J. D. Helmann and M. J. Chamberlin, Proc. Natl. Acad. Sci. USA 84:6422-6424) and a derivative consensus sequence, which is found only in the 5' region of operons directly under FlbB and FlaI control. Images PMID:2832369

  8. Effect of activation sequence on transmural patterns of repolarization and action potential duration in rabbit ventricular myocardium

    PubMed Central

    Myles, Rachel C.; Bernus, Olivier; Burton, Francis L.; Cobbe, Stuart M.

    2010-01-01

    Although transmural heterogeneity of action potential duration (APD) is established in single cells isolated from different tissue layers, the extent to which it produces transmural gradients of repolarization in electrotonically coupled ventricular myocardium remains controversial. The purpose of this study was to examine the relative contribution of intrinsic cellular gradients of APD and electrotonic influences to transmural repolarization in rabbit ventricular myocardium. Transmural optical mapping was performed in left ventricular wedge preparations from eight rabbits. Transmural patterns of activation, repolarization, and APD were recorded during endocardial and epicardial stimulation. Experimental results were compared with modeled data during variations in electrotonic coupling. A transmural gradient of APD was evident during endocardial stimulation, which reflected differences previously seen in isolated cells, with the longest APD at the endocardium and the shortest at the epicardium (endo: 165 ± 5 vs. epi: 147 ± 4 ms; P < 0.05). During epicardial stimulation, this gradient reversed (epi: 162 ± 4 vs. endo: 148 ± 6 ms; P < 0.05). In both activation sequences, transmural repolarization followed activation and APD shortened along the activation path such that significant transmural gradients of repolarization did not occur. This correlation between transmural activation time and APD was recapitulated in simulations and varied with changes in intercellular coupling, confirming that it is mediated by electrotonic current flow between cells. These data suggest that electrotonic influences are important in determining the transmural repolarization sequence in rabbit ventricular myocardium and that they are sufficient to overcome intrinsic differences in the electrophysiological properties of the cells across the ventricular wall. PMID:20889843

  9. Supporting the Use of Unmanned Aircraft Systems(UAS) for Global Science Observations in Civil and Segregated Airspace

    NASA Technical Reports Server (NTRS)

    Mulac, B. L.; Reider. K/

    2010-01-01

    Unmanned Aircraft Systems (UAS) are growing more popular within the earth science community as a way to augment measurements currently made with manned aircraft. UAS arc uniquely suited for applications that require long dwell times and/or in locations that are generally too dangerous for manned aircraft. Environmental monitoring in areas like the Arctic or obtaining data within a hurricane are just a couple of examples of many applications to which UAS are ideally suited. However, UAS are not without their challenges. Most unmanned aircraft are unable to meet current airspace regulations that are in place for manned aircraft, and specific airspace standards and regulations for unmanned aircraft do not exist. As a result, gaining access to civil airspace for flights is very difficult around the world. Under Term of Reference 48 within the ISPRS Commission 1, WGI/I: Standardization of Aircraft Interfaces, efforts have been made to understand and quantify the current state of UAS airspace access on a global scale. The results of these efforts will be presented along with examples of successful science missions that have been conducted internationally during the past year.

  10. Multi-Objective Calibration of Hydrological Model Parameters Using MOSCEM-UA

    NASA Astrophysics Data System (ADS)

    Wang, Yuhui; Lei, Xiaohui; Jiang, Yunzhong; Wang, Hao

    2010-05-01

    In the past two decades, many evolutionary algorithms have been adopted in the auto-calibration of hydrological model such as NSGA-II, SCEM, etc., some of which has shown ideal performance. In this article, a detailed hydrological model auto-calibration algorithm Multi-objective Shuffled Complex Evolution Metropolis (MOSCEM-UA) has been introduced to carry out auto-calibration of hydrological model in order to clarify the equilibrium and the uncertainty of model parameters. The development and the implement flow chart of the advanced multi-objective algorithm (MOSCEM-UA) were interpreted in detail. Hymod, a conceptual hydrological model depending on Moore's concept, was then introduced as a lumped Rain-Runoff simulation approach with several principal parameters involved. The five important model parameters subjected to calibration includes maximum storage capacity, spatial variability of the soil moisture capacity, flow distributing factor between slow and quick reservoirs as well as slow tank and quick tank distribution factor. In this study, a test case on the up-stream area of KuanCheng hydrometric station in Haihe basin was studied to verify the performance of calibration. Two objectives including objective for high flow process and objective for low flow process are chosen in the process of calibration. The results emphasized that the interrelationship between objective functions could be described in correlation Pareto Front by using MOSCEM-UA. The Pareto Front can be draw after the iteration. Further more, post range of parameters corresponding to Pareto sets could also be drawn to identify the prediction range of the model. Then a set of balanced parameter was chosen to validate the model and the result showed an ideal prediction. Meanwhile, the correlation among parameters and their effects on the model performance could also be achieved.

  11. Evolution of the magnetic field-temperature phase diagram in UAs1-xSex

    NASA Astrophysics Data System (ADS)

    Plackowski, Tomasz; Matusiak, Marcin; Sznajd, Jozef

    2010-09-01

    The evolution of the magnetic field-temperature phase diagram of UAs1-xSex with x in the range of 0-0.1 is studied by means of magnetocaloric and specific-heat measurements. Our interest is focused on the high-temperature phase transitions and especially on the point, where the paramagnetic (P) and two ordered phases meet. For undoped UAs these two ordered states are the ferrimagnetic (Fi) and the type-I antiferromagnetic phases. According to Sinha [Phys. Rev. Lett. 45, 1028 (1980)]10.1103/PhysRevLett.45.1028 the antiferromagnetic phase transition is in the vicinity of a Lifshitz point. Furthermore, Kuznietz [J. Magn. Magn. Mater. 61, 246 (1986)]10.1016/0304-8853(86)90033-8 showed that an incommensurate phase (IC) emerges between the type-I (or type-IA) antiferromagnetic and paramagnetic phases in the case of UAs1-xSex with 0

  12. UAS-based quantification of sedimentary body changes at Langgriesgraben, Styria, Austria

    NASA Astrophysics Data System (ADS)

    Schöttl, Stefan; Seier, Gernot; Rascher, Eric; Sulzer, Wolfgang; Sass, Oliver

    2016-04-01

    The creek's sedimentary body at Langgriesgraben is characterized by inconstant but recurring earth surface changes. Mass transport and deposition occur partly spontaneously and endanger primary infrastructure, in particular a main road. It is often mentioned in literature that the use of small and lightweight UAS is promising. To contribute to that, this study focuses on the documentation and quantification of carried sedimentary material by using a hexacopter in a high alpine environment. The images which were captured on two different dates, allow generating orthophotos and DEMs. The comparison of these derivatives enables a deeper understanding of the sedimentary body and its conditions. Our specific study area is a part of a bigger research area of another research project (Sedyn-X). One of the main goals of that project is to create a conceptual model of the sedimentary cascade for the entire Johnsbachtal catchment and to quantify geomorphic processes (e.g. erosion, transport and rearrangement of sediments). Therefore Terrestrial Laser Scanning recordings are performed as well. Through the generated surface models from different eras, changes in surface and volume can be quantified. The photogrammetric surface models can be compared with almost simultaneous ALS and TLS recordings. Apart from that, the outcomes will provide hard facts for decision-makers. The UAS related processing steps and methods (e.g. DGPS, SfM) are more or less established and well-known, but the applicability of UAS for recording feasible data, has to be proved constantly. We assume that our results will answer concrete questions and thus reduce expected damage and costs.

  13. Upcycling UAS into modular platforms for Earth science and autonomy research

    NASA Astrophysics Data System (ADS)

    Dahlgren, R. P.; Dary, O. G.; Ogunbiyi, J. A.; Pinsker, E. A.; Reynolds, K. W.; Werner, C. A.

    2015-12-01

    This reports the results of a multidisciplinary project conducted at the NASA Ames Research Center (ARC) involving a number of student interns over the summers of 2014 and 2015. The project had a goal of applying rapid prototyping techniques, including 3D printing, to unmanned aircraft systems (UAS), and demonstrated that surplus UAS could be repurposed into new configurations suitable for conducting science missions. ARC received several units of the RQ-11 Raven and RQ-14 DragonEye manufactured by AeroVironment Corporation, along with ground stations and spare parts. These UAS have electric propulsion, a wingspan and length ~1m; they are designed to disassemble for transport, have a simple wing design with snap-together interfaces, made from lightweight materials. After removing all ITAR restricted technology these were made available to summer interns that also had access to 3D printing, CNC laser-cutting equipment through NASA's SpaceShop. The modular nature and simple wing profiles enabled the teams to deconstruct and subsequently reconfigure them into completely new airframes. Two multi-fuselage designs were assembled using Ardupilot-based common avionics architecture (CAA), with extended wingspans, an H-tail and an innovative cambered flap system. After NASA internal design reviews, the students fabricated new control surfaces and subcomponents necessary to splice the RQ-14 subcomponents back together. Laboratory testing was performed on test articles to determine bending modulus and safety factors, and documentation was prepared for airworthiness flight safety review. Upon receiving approval of documentation and flight readiness certification, the repurposed UAS were flown at Crows Landing airfield in Stanislaus County, California, initially under RC pilot control and subsequently under fully autonomous control. The RQ-11 is now being used to expand on the modularity design and the Team has been at work in designing different configurations and a payload pod

  14. UAS Integration into the NAS: iHTL: DAA Display Evaluation Preliminary Results

    NASA Technical Reports Server (NTRS)

    Fern, Lisa; Rorie, Conrad; Shively, Jay

    2014-01-01

    The integrated human-in-the-loop (iHITL) simulation examined the effect of four different Detect-and-Avoid (DAA) display concepts on unmanned aircraft system (UAS) pilots' ability to maintain safe separation. The displays varied in the type and amount of guidance they provided to pilots. The study's background and methodology are discussed, followed by a presentation of the preliminary 'measured response' data (i.e., pilots' end-to-end response time in reacting to traffic alerts on their DAA display). Results indicate that display type had moderate to no affect on pilot measured response times.

  15. The Impact of Integrated Maneuver Guidance Information on UAS Pilots Performing the Detect and Avoid Task

    NASA Technical Reports Server (NTRS)

    Rorie, Conrad; Fern, Lisa

    2015-01-01

    The integrated human-in-the-loop (iHITL) simulation examined the effect of four different Detect-and-Avoid (DAA) display concepts on unmanned aircraft system (UAS) pilots' ability to maintain safe separation. The displays varied in the type and amount of guidance they provided to pilots. The study's background and methodology are discussed, followed by the 'measured response' data (i.e., pilots' end-to-end response time in reacting to traffic alerts on their DAA display). Results indicate that display type had a significant impact on how long pilot's spent interacting with the interface (i.e., edit times).

  16. The Unmanned Mission Avionics Test Heliciopter - a Flexible and Versatile Vtol-Uas Experimental System

    NASA Astrophysics Data System (ADS)

    Schulz, H.-W., , Dr.

    2011-09-01

    civil customers. These applications cover a wide spectrum from R&D programs for the military customer to special services for the civil customer. This paper focuses on the technical conversion of a commercially available VTOL-UAS to ESG's Unmanned Mission Avionics Test Helicopter (UMAT), its concept and operational capabilities. At the end of the paper, the current integration of a radar sensor is described as an example of the UMATs flexibility. The radar sensor is developed by the Fraunhofer Institute for High Frequency Physics and Radar Techniques (FHR). It is integrated by ESG together with the industrial partner SWISS UAV.

  17. sUAS for Rapid Pre-Storm Coastal Characterization and Vulnerability Assessment

    NASA Astrophysics Data System (ADS)

    Brodie, K. L.; Slocum, R. K.; Spore, N.

    2015-12-01

    Open coast beaches and surf-zones are dynamic three-dimensional environments that can evolve rapidly on the time-scale of hours in response to changing environmental conditions. Up-to-date knowledge about the pre-storm morphology of the coast can be instrumental in making accurate predictions about coastal change and damage during large storms like Hurricanes and Nor'Easters. For example, alongshore variations in the shape of ephemeral sandbars along the coastline can focus wave energy, subjecting different stretches of coastline to significantly higher waves. Variations in beach slope and width can also alter wave runup, causing higher wave-induced water levels which can cause overwash or inlet breaching. Small Unmanned Aerial Systems (sUAS) offer a new capability to rapidly and inexpensively map vulnerable coastlines in advance of approaching storms. Here we present results from a prototype system that maps coastal topography and surf-zone morphology utilizing a multi-camera sensor. Structure-from-motion algorithms are used to generate topography and also constrain the trajectory of the sUAS. These data, in combination with mount boresight information, are used to rectify images from ocean-facing cameras. Images from all cameras are merged to generate a wide field of view allowing up to 5 minutes of continuous imagery time-series to be collected as the sUAS transits the coastline. Water imagery is then analyzed using wave-kinematics algorithms to provide information on surf-zone bathymetry. To assess this methodology, the absolute and relative accuracy of topographic data are evaluated in relation to simultaneously collected terrestrial lidar data. Ortho-rectification of water imagery is investigated using visible fixed targets installed in the surf-zone, and through comparison to stationary tower-based imagery. Future work will focus on evaluating how topographic and bathymetric data from this sUAS approach can be used to update forcing parameters in both

  18. Biomass estimator for NIR image with a few additional spectral band images taken from light UAS

    NASA Astrophysics Data System (ADS)

    Pölönen, Ilkka; Salo, Heikki; Saari, Heikki; Kaivosoja, Jere; Pesonen, Liisa; Honkavaara, Eija

    2012-05-01

    A novel way to produce biomass estimation will offer possibilities for precision farming. Fertilizer prediction maps can be made based on accurate biomass estimation generated by a novel biomass estimator. By using this knowledge, a variable rate amount of fertilizers can be applied during the growing season. The innovation consists of light UAS, a high spatial resolution camera, and VTT's novel spectral camera. A few properly selected spectral wavelengths with NIR images and point clouds extracted by automatic image matching have been used in the estimation. The spectral wavelengths were chosen from green, red, and NIR channels.

  19. Design, Development, and Testing of a Compound Wing V/TOL small UAS

    NASA Technical Reports Server (NTRS)

    Logan, Michael J.; Vranas, Thomas L.

    2015-01-01

    This paper discusses the development and testing of an innovative small UAS (Unmanned Aircraft System). The design of the vehicle was driven by the need to both have long endurance yet still have the convenience of V/TOL (Vertical Take-Off and Landing) operation. The paper discusses some of the design considerations and configurations evaluated in searching for a configuration that met the demanding mission requirements. The paper also discusses some aspects of the compound wing and experimental testing conducted to discern the optimum parameters for the wing's design. The paper discusses the results of the preliminary flight testing and outlines further research to be conducted.

  20. Comparison of Antifungal Activities and 16S Ribosomal DNA Sequences of Clinical and Environmental Isolates of Stenotrophomonas maltophilia

    PubMed Central

    Minkwitz, Arite; Berg, Gabriele

    2001-01-01

    In recent years, the gram-negative bacterium Stenotrophomonas maltophilia has become increasingly important in biotechnology and as a nosocomial pathogen, giving rise to a need for new information about its taxonomy and epidemiology. To determine intraspecies diversity and whether strains can be distinguished based on the sources of their isolation, 50 S. maltophilia isolates from clinical and environmental sources, including strains of biotechnological interest, were investigated. The isolates were characterized by in vitro antagonism against pathogenic fungi and the production of antifungal metabolites and enzymes. Phenotypically the strains showed variability that did not correlate significantly with their sources of isolation. Clinical strains displayed remarkable activity against the human pathogenic fungus Candida albicans. Antifungal activity against plant pathogens was more common and generally more severe from the environmental isolates, although not exclusive to them. All isolates, clinical and environmental, produced a range of antifungal metabolites including antibiotics, siderophores, and the enzymes proteases and chitinases. From 16S ribosomal DNA sequencing analysis, the isolates could be separated into three clusters, two of which consisted of isolates originating from the environment, especially rhizosphere isolates, and one of which consisted of clinical and aquatic strains. In contrast to the results of other recent investigations, these strains could be grouped based on their sources of isolation, with the exception of three rhizosphere isolates. Because there was evidence of nucleotide signature positions within the sequences that are suitable for distinguishing among the clusters, the clusters could be defined as different genomovars of S. maltophilia. Key sequences on the 16S ribosomal DNA could be used to develop a diagnostic method that differentiates these genomovars. PMID:11136762

  1. The Effect of Clade-Specific Sequence Polymorphisms on HIV-1 Protease Activity and Inhibitor Resistance Pathways

    SciTech Connect

    Bandaranayake, Rajintha M.; Kolli, Madhavi; King, Nancy M.; Nalivaika, Ellen A.; Heroux, Annie; Kakizawa, Junko; Sugiura, Wataru; Schiffer, Celia A.

    2010-09-08

    The majority of HIV-1 infections around the world result from non-B clade HIV-1 strains. The CRF01{_}AE (AE) strain is seen principally in Southeast Asia. AE protease differs by {approx}10% in amino acid sequence from clade B protease and carries several naturally occurring polymorphisms that are associated with drug resistance in clade B. AE protease has been observed to develop resistance through a nonactive-site N88S mutation in response to nelfinavir (NFV) therapy, whereas clade B protease develops both the active-site mutation D30N and the nonactive-site mutation N88D. Structural and biochemical studies were carried out with wild-type and NFV-resistant clade B and AE protease variants. The relationship between clade-specific sequence variations and pathways to inhibitor resistance was also assessed. AE protease has a lower catalytic turnover rate than clade B protease, and it also has weaker affinity for both NFV and darunavir (DRV). This weaker affinity may lead to the nonactive-site N88S variant in AE, which exhibits significantly decreased affinity for both NFV and DRV. The D30N/N88D mutations in clade B resulted in a significant loss of affinity for NFV and, to a lesser extent, for DRV. A comparison of crystal structures of AE protease shows significant structural rearrangement in the flap hinge region compared with those of clade B protease and suggests insights into the alternative pathways to NFV resistance. In combination, our studies show that sequence polymorphisms within clades can alter protease activity and inhibitor binding and are capable of altering the pathway to inhibitor resistance.

  2. Plasminogen activators in experimental colorectal neoplasia: a role in the adenoma-carcinoma sequence?

    PubMed Central

    Gelister, J S; Lewin, M R; Driver, H E; Savage, F; Mahmoud, M; Gaffney, P J; Boulos, P B

    1987-01-01

    An important step in the transition from adenomatous polyp to invasive carcinoma is the degradation of the epithelial basement membrane. By the generation of plasmin, plasminogen activators may play an important role in regulating the extracellular protease activity required for this event to occur. The production of biofunctional urokinase and of tissue plasminogen activator was therefore investigated in the dimethylhydrazine induced rat model of colorectal neoplasia. Both adenomatous polyps (p values less than 0.001) and colorectal carcinomas (p values less than 0.001) were demonstrated to produce a significant excess of both urokinase and tissue plasminogen activator when compared with macroscopically normal colon. There was, however, no increased production of either enzyme by macroscopically normal preneoplastic colon when compared with control colon. This enhanced capacity of colorectal tumours to produce plasminogen activators and generate plasmin is thus a feature of both the premalignant as well as the malignant phenotype. These enzymes may contribute to the malignant potential of adenomatous polyps and to the invasive capacity of established carcinomas. PMID:3115868

  3. The Chinese Hamster Dihydrofolate Reductase Replication Origin Beta Is Active at Multiple Ectopic Chromosomal Locations and Requires Specific DNA Sequence Elements for Activity

    PubMed Central

    Altman, Amy L.; Fanning, Ellen

    2001-01-01

    To identify cis-acting genetic elements essential for mammalian chromosomal DNA replication, a 5.8-kb fragment from the Chinese hamster dihydrofolate reductase (DHFR) locus containing the origin beta (ori-β) initiation region was stably transfected into random ectopic chromosomal locations in a hamster cell line lacking the endogenous DHFR locus. Initiation at ectopic ori-β in uncloned pools of transfected cells was measured using a competitive PCR-based nascent strand abundance assay and shown to mimic that at the endogenous ori-β region in Chinese hamster ovary K1 cells. Initiation activity of three ectopic ori-β deletion mutants was reduced, while the activity of another deletion mutant was enhanced. The results suggest that a 5.8-kb fragment of the DHFR ori-β region is sufficient to direct initiation and that specific DNA sequences in the ori-β region are required for efficient initiation activity. PMID:11158297

  4. Comparison of dissolved-organic-carbon residuals from air- and pure-oxygen-activated-sludge sequencing-batch reactors.

    PubMed

    Esparza-Soto, Mario; Fox, Peter; Westerhoff, Paul

    2006-03-01

    Literature shows that full-scale pure-oxygen activated sludge (O2-AS) wastewater treatment plants (WWTPs) generate effluents with higher dissolved-organic carbon (DOC) concentrations and larger high-molecular-weight fractions compared to air-activated-sludge (Air-AS) WWTP effluents. The purpose of this paper was to evaluate how gas supplied (air vs. pure oxygen) to sequencing-batch reactors affected DOC transformations. The main conclusions of this paper are (a) O2-AS effluent DOC is more refractory than air-AS effluent DOC; and (b) O2-AS systems may have higher five-day biochemical oxygen demand removals than air-AS systems; however, in terms of COD and DOC removal, air-AS systems are better than O2-AS systems. Analysis of a database from side-by-side O2- and air-AS pilot tests from literature supported these observations. PMID:16629273

  5. Inducible in vivo DNA footprints define sequences necessary for UV light activation of the parsley chalcone synthase gene.

    PubMed Central

    Schulze-Lefert, P; Dangl, J L; Becker-André, M; Hahlbrock, K; Schulz, W

    1989-01-01

    We began characterization of the protein--DNA interactions necessary for UV light induced transcriptional activation of the gene encoding chalcone synthase (CHS), a key plant defense enzyme. Three light dependent in vivo footprints appear on a 90 bp stretch of the CHS promoter with a time course correlated with the onset of CHS transcription. We define a minimal light responsive promoter by functional analysis of truncated CHS promoter fusions with a reporter gene in transient expression experiments in parsley protoplasts. Two of the three footprinted sequence 'boxes' reside within the minimal promoter. Replacement of 10 bp within either of these 'boxes' leads to complete loss of light responsiveness. We conclude that these sequences define the necessary cis elements of the minimal CHS promoter's light responsive element. One of the functionally defined 'boxes' is homologous to an element implicated in regulation of genes involved in photosynthesis. These data represent the first example in a plant defense gene of an induced change in protein--DNA contacts necessary for transcriptional activation. Also, our data argue strongly that divergent light induced biosynthetic pathways share common regulatory units. Images PMID:2566481

  6. Robustness of nucleosome patterns in the presence of DNA sequence-specific free energy landscapes and active remodeling

    NASA Astrophysics Data System (ADS)

    Nuebler, Johannes; Obermayer, Benedikt; Möbius, Wolfram; Wolff, Michael; Gerland, Ulrich

    Proper positioning of nucleosomes in eukaryotic cells is important for transcription regulation. When averaged over many genes, nucleosome positions in coding regions follow a simple oscillatory pattern, which is described to a surprising degree of accuracy by a simple one-dimensional gas model for particles interacting via a soft-core repulsion. The quantitative agreement is surprising given that nucleosome positions are known to be determined by a complex interplay of mechanisms including DNA sequence-specific nucleosome stability and active repositioning of nucleosomes by remodeling enzymes. We rationalize the observed robustness of the simple oscillatory pattern by showing that the main effect of several known nucleosome positioning mechanisms is a renormalization of the particle interaction. For example, ``disorder'' from sequence-specific affinities leads to an apparent softening, while active remodeling can result in apparent softening for directional sliding or apparent stiffening for clamping mechanisms. We suggest that such parameter renormalization can explain the apparent difference of nucleosome properties in two yeast species, S. cerevisiae and S. pombe.

  7. Complete Genome Sequence of the Sugar Cane Endophyte Pseudomonas aurantiaca PB-St2, a Disease-Suppressive Bacterium with Antifungal Activity toward the Plant Pathogen Colletotrichum falcatum

    PubMed Central

    Bauer, Judith S.

    2014-01-01

    The endophytic bacterium Pseudomonas aurantiaca PB-St2 exhibits antifungal activity and represents a biocontrol agent to suppress red rot disease of sugar cane. Here, we report the completely sequenced 6.6-Mb genome of P. aurantiaca PB-St2. The sequence contains a repertoire of biosynthetic genes for secondary metabolites that putatively contribute to its antagonistic activity and its plant-microbe interactions. PMID:24459254

  8. The cauliflower mosaic virus (CaMV) 35S promoter sequence alters the level and patterns of activity of adjacent tissue- and organ-specific gene promoters.

    PubMed

    Zheng, Xuelian; Deng, Wei; Luo, Keming; Duan, Hui; Chen, Yongqin; McAvoy, Richard; Song, Shuiqing; Pei, Yan; Li, Yi

    2007-08-01

    Here we report the effect of the 35S promoter sequence on activities of the tissue- and organ-specific gene promoters in tobacco plants. In the absence of the 35S promoter sequence the AAP2 promoter is active only in vascular tissues as indicated by expression of the AAP2:GUS gene. With the 35S promoter sequence in the same T-plasmid, transgenic plants exhibit twofold to fivefold increase in AAP2 promoter activity and the promoter becomes active in all tissue types. Transgenic plants hosting the ovary-specific AGL5:iaaM gene (iaaM coding an auxin biosynthetic gene) showed a wild-type phenotype except production of seedless fruits, whereas plants hosting the AGL5:iaaM gene along with the 35S promoter sequence showed drastic morphological alterations. RT-PCR analysis confirms that the phenotype was caused by activation of the AGL5:iaaM gene in non-ovary organs including roots, stems and flowers. When the pollen-, ovule- and early embryo-specific PAB5:barnase gene (barnase coding a RNase gene) was transformed, the presence of 35S promoter sequence drastically reduced transformation efficiencies. However, the transformation efficiencies were restored in the absence of 35S promoter, indicating that the 35S promoter might activate the expression of PAB5:barnase in non-reproductive organs such as calli and shoot primordia. Furthermore, if the 35S promoter sequence was replaced with the NOS promoter sequence, no alteration in AAP2, AGL5 or PAB5 promoter activities was observed. Our results demonstrate that the 35S promoter sequence can convert an adjacent tissue- and organ-specific gene promoter into a globally active promoter. PMID:17340093

  9. DNA binding specificity and sequence of Xanthomonas campestris catabolite gene activator protein-like protein.

    PubMed Central

    Dong, Q; Ebright, R H

    1992-01-01

    The Xanthomonas campestris catabolite gene activator protein-like protein (CLP) can substitute for the Escherichia coli catabolite gene activator protein (CAP) in transcription activation at the lac promoter (V. de Crecy-Lagard, P. Glaser, P. Lejeune, O. Sismeiro, C. Barber, M. Daniels, and A. Danchin, J. Bacteriol. 172:5877-5883, 1990). We show that CLP has the same DNA binding specificity as CAP at positions 5, 6, and 7 of the DNA half site. In addition, we show that the amino acids at positions 1 and 2 of the recognition helix of CLP are identical to the amino acids at positions 1 and 2 of the recognition helix of CAP:i.e., Arg at position 1 and Glu at position 2. PMID:1322886

  10. Whole-genome sequencing reveals activation-induced cytidine deaminase signatures during indolent chronic lymphocytic leukaemia evolution

    PubMed Central

    Kasar, S.; Kim, J.; Improgo, R.; Tiao, G.; Polak, P.; Haradhvala, N.; Lawrence, M. S.; Kiezun, A.; Fernandes, S. M.; Bahl, S.; Sougnez, C.; Gabriel, S.; Lander, E. S.; Kim, H. T.; Getz, G.; Brown, J. R.

    2015-01-01

    Patients with chromosome 13q deletion or normal cytogenetics represent the majority of chronic lymphocytic leukaemia (CLL) cases, yet have relatively few driver mutations. To better understand their genomic landscape, here we perform whole-genome sequencing on a cohort of patients enriched with these cytogenetic characteristics. Mutations in known CLL drivers are seen in only 33% of this cohort, and associated with normal cytogenetics and unmutated IGHV. The most commonly mutated gene in our cohort, IGLL5, shows a mutational pattern suggestive of activation-induced cytidine deaminase (AID) activity. Unsupervised analysis of mutational signatures demonstrates the activities of canonical AID (c-AID), leading to clustered mutations near active transcriptional start sites; non-canonical AID (nc-AID), leading to genome-wide non-clustered mutations, and an ageing signature responsible for most mutations. Using mutation clonality to infer time of onset, we find that while ageing and c-AID activities are ongoing, nc-AID-associated mutations likely occur earlier in tumour evolution. PMID:26638776

  11. Whole-genome sequencing reveals activation-induced cytidine deaminase signatures during indolent chronic lymphocytic leukaemia evolution.

    PubMed

    Kasar, S; Kim, J; Improgo, R; Tiao, G; Polak, P; Haradhvala, N; Lawrence, M S; Kiezun, A; Fernandes, S M; Bahl, S; Sougnez, C; Gabriel, S; Lander, E S; Kim, H T; Getz, G; Brown, J R

    2015-01-01

    Patients with chromosome 13q deletion or normal cytogenetics represent the majority of chronic lymphocytic leukaemia (CLL) cases, yet have relatively few driver mutations. To better understand their genomic landscape, here we perform whole-genome sequencing on a cohort of patients enriched with these cytogenetic characteristics. Mutations in known CLL drivers are seen in only 33% of this cohort, and associated with normal cytogenetics and unmutated IGHV. The most commonly mutated gene in our cohort, IGLL5, shows a mutational pattern suggestive of activation-induced cytidine deaminase (AID) activity. Unsupervised analysis of mutational signatures demonstrates the activities of canonical AID (c-AID), leading to clustered mutations near active transcriptional start sites; non-canonical AID (nc-AID), leading to genome-wide non-clustered mutations, and an ageing signature responsible for most mutations. Using mutation clonality to infer time of onset, we find that while ageing and c-AID activities are ongoing, nc-AID-associated mutations likely occur earlier in tumour evolution. PMID:26638776

  12. Ferric reductase activity and PsFRO1 sequence variation in pisum sps

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Physiological studies in pea (Pisum sativum) suggest that the reduction of iron (Fe) is the rate-limiting physiological process in Fe acquisition by dicotyledonous plants. Previous molecular work suggests that ferric reductase activity is regulated at both the transcriptional and post-translational ...

  13. Situated Uses of ICT and Mediation of Joint Activity in a Primary Education Instructional Sequence

    ERIC Educational Resources Information Center

    Coll, Cesar; Rochera, Maria J.; Colomina, Rosa

    2010-01-01

    Introduction: From a socioconstructivist and situated perspective of teaching and learning processes, the authors analyze how one teacher and her group of 19 sixth-grade pupils use ICT. The study focuses on the way these tools mediate their activity, and evaluates the tools' potential for teaching and learning innovation. Method: A case study…

  14. Draft Genome Sequence of Acinetobacter johnsonii MB44, Exhibiting Nematicidal Activity against Caenorhabditis elegans

    PubMed Central

    Tian, Shijing; Ali, Muhammad; Xie, Li

    2016-01-01

    Acinetobacter johnsonii MB44 was isolated from a frost-plant-tissue sample, which showed noteworthy nematicidal activity against the model organism Caenorhabditis elegans. Here, we report the 3.4 Mb draft genome of A. johnsonii MB44, which will help in understanding the molecular mechanism of its ability to infect nematodes. PMID:26893438

  15. ACTIVATION OF THE LAC GENES OF TN951 BY INSERTION SEQUENCES FROM PSUEDOMONAS CEPACIA

    EPA Science Inventory

    We have identified several transposable gene-activating elements from Psuedomonas cepacia on the basis of their ability to increase expression of the genes of the broad-hos-range plasmid pGC9l.14. hen introduced into auxotrophic derivatives of P. cepacia 249 (ATCC 17616), this pl...

  16. Architecture for persistent surveillance using mast and UAS-based autonomous sensing with bio-inspired technologies

    NASA Astrophysics Data System (ADS)

    Burman, Jerry

    2014-06-01

    A sophisticated real time architecture for capturing relevant battlefield information of personnel and terrestrial events from a network of mast based imaging and unmanned aerial systems (UAS) with target detection, tracking, classification and visualization is presented. Persistent surveillance of personnel and vehicles is achieved using a unique spatial and temporally invariant motion detection and tracking algorithm for mast based cameras in combination with aerial remote sensing to autonomously monitor unattended ground based sensor networks. UAS autonomous routing is achieved using bio-inspired algorithms that mimic how bacteria locate nutrients in their environment. Results include field test data, performance and lessons learned. The technology also has application to detecting and tracking low observables (manned and UAS), counter MANPADS, airport bird detection and search and rescue operations.

  17. Using the MicroASAR on the NASA SIERRA UAS in the Characterization of Arctic Sea Ice Experiment

    NASA Technical Reports Server (NTRS)

    Zaugg, Evan; Long, David; Edwards, Matthew; Fladeland, Matthew; Kolyer, Richard; Crocker, Ian; Maslanik, James; Herzfeld, Ute; Wallin, Bruce

    2010-01-01

    The MicroASAR is a flexible, robust SAR system built on the successful legacy of the BYU microSAR. It is a compact LFM-CW SAR system designed for low-power operation on small, manned aircraft or UAS. The NASA SIERRA UAS was designed to test new instruments and support flight experiments. NASA used the MicroASAR on the SIERRA during a science field campaign in 2009 to study sea ice roughness and break-up in the Arctic and high northern latitudes. This mission is known as CASIE-09 (Characterization of Arctic Sea Ice Experiment 2009). This paper describes the MicroASAR and its role flying on the SIERRA UAS platform as part of CASIE-09.

  18. A Palladium(II)-Catalyzed C-H Activation Cascade Sequence for Polyheterocycle Formation.

    PubMed

    Cooper, Stephen P; Booker-Milburn, Kevin I

    2015-05-26

    Polyheterocycles are found in many natural products and are useful moieties in functional materials and drug design. As part of a program towards the synthesis of Stemona alkaloids, a novel palladium(II)-catalyzed C-H activation strategy for the construction of such systems has been developed. Starting from simple 1,3-dienyl-substituted heterocycles, a large range of polycyclic systems containing pyrrole, indole, furan and thiophene moieties can be synthesized in a single step. PMID:25872492

  19. Emergency preparedness activities during an ongoing seismic swarm: the experience of the 2011-2012 Pollino (Southern Italy) sequence

    NASA Astrophysics Data System (ADS)

    Masi, A.; Mucciarelli, M.; Chiauzzi, L.; De Costanzo, G.; Loperte, G.

    2012-04-01

    Facing natural disasters effects can be a very difficult task lacking suitable activities and tools to preventively prepare the involved community (people, authorities, professionals, …) to the expected events. Therefore, a suite of preventive actions should be carried out to mitigate natural risks, in particular working to reduce the territorial vulnerability with respect to the specific natural hazard at hand, and to increase people response capacity. In fact, building social capacity helps to increase the risk perception and the people capacity to adapt to and cope with natural hazards. Since October 2011 a seismic swarm is affecting the Pollino mountain range, Southern Italy. At present the sequence is still ongoing, with more than 500 events with M>1, at least 40 well perceived by the population and a maximum magnitude at 3.6. The area mainly affected by the seismic sequence includes 12 villages, with a total population of about 50.000 inhabitants and, according to the current seismic hazard map it has high seismicity level. Such area was hit by a magnitude Ml=5.7 event in 1998 that produced macroseismic intensity not higher that VII-VIII degree of MCS scale and caused one dead, some injured and widespread damage in at least six municipalities. During the sequence, the National Department of Civil Protection (DPC) and the Civil Protection of Basilicata Region decided to put in action some measures aimed at verifying and enhancing emergency preparedness. These actions have been carried out with a constant and fruitful collaboration among the main stakeholders involved (scientific community, local and national governmental agencies, civil protection volunteers, etc) trough the following main activities: 1. collaboration between scientific community and the local and national offices of Civil Protection especially in the relationship with local authorities (e.g. mayors, which are civil protection authorities in their municipality); 2. interaction between DPC

  20. Reductant and sequence effects on the morphology and catalytic activity of peptide-capped Au nanoparticles.

    PubMed

    Briggs, Beverly D; Li, Yue; Swihart, Mark T; Knecht, Marc R

    2015-04-29

    The use of peptides as capping ligands for materials synthesis has been widely explored. The ambient conditions of bio-inspired syntheses using molecules such as peptides represent an attractive route for controlling the morphology and activity of nanomaterials. Although various reductants can be used in such syntheses, no comprehensive comparison of the same bio-based ligand with different reductants has been reported. In this contribution, peptides AuBP1, AuBP2, and Pd4 are used in the synthesis of Au nanoparticles. The reductant strength is varied by using three different reducing agents: NaBH4, hydrazine, and ascorbic acid. These changes in reductant produce significant morphological differences in the final particles. The weakest reductant, ascorbic acid, yields large, globular nanoparticles with rough surfaces, whereas the strongest reductant, NaBH4, yields small, spherical, smooth nanomaterials. Studies of 4-nitrophenol reduction using the Au nanoparticles as catalysts reveal a decrease in activation energy for the large, globular, rough materials relative to the small, spherical, smooth materials. These studies demonstrate that modifying the reductant is a simple way to control the activity of peptide-capped nanoparticles. PMID:25839335

  1. Influence of upper airway sensory receptors on respiratory muscle activation in humans.

    PubMed

    Redline, S; Strohl, K P

    1987-07-01

    We reasoned that neural information from upper airway (UA) sensory receptors could influence the relationship between UA and diaphragmatic neuromuscular responses to hypercapnia. In this study, the electromyographic (EMG) activities of the alae nasi (AN), genioglossus (GG), and chest wall (CW) or diaphragm (Di) to ventilatory loading were assessed in six laryngectomized, tracheostomized human subjects and in six subjects breathing with an intact UA before and after topical UA anesthesia. The EMG activities of the UA and thoracic muscles increased at similar rates with increasing hypercapnia in normal subjects, in subjects whose upper airways were anesthetized, and in laryngectomized subjects breathing with a cervical tracheostomy. Furthermore, in the laryngectomized subjects, respiratory muscle EMG activation increased with resistive inspiratory loading (15 cmH2O X l-1 X s) applied at the level of a cervical tracheostomy. At an average expired CO2 fraction of 7.0%, resistive loading resulted in a 93 +/- 26.3% (SE) increase in peak AN EMG activity, a 39 +/- 2.0% increase in peak GG EMG activity, and a 43.2 +/- 16.5% increase in peak CW (Di) EMG activity compared with control values. We conclude that the ventilatory responses of the UA and thoracic muscles to ventilatory loading are not substantially influenced by laryngectomy or UA anesthesia. PMID:3624139

  2. From CoRoT 102899501 to the Sun. A time evolution model of chromospheric activity on the main sequence

    NASA Astrophysics Data System (ADS)

    Gondoin, P.; Gandolfi, D.; Fridlund, M.; Frasca, A.; Guenther, E. W.; Hatzes, A.; Deeg, H. J.; Parviainen, H.; Eigmüller, P.; Deleuil, M.

    2012-12-01

    Aims: The present study reports measurements of the rotation period of a young solar analogue, estimates of its surface coverage by photospheric starspots and of its chromospheric activity level, and derivations of its evolutionary status. Detailed observations of many young solar-type stars, such as the one reported in the present paper, provide insight into rotation and magnetic properties that may have prevailed on the Sun in its early evolution. Methods: Using a model based on the rotational modulation of the visibility of active regions, we analysed the high-accuracy CoRoT lightcurve of the active star CoRoT 102899501. Spectroscopic follow-up observations were used to derive its fundamental parameters. We compared the chromospheric activity level of Corot 102899501 with the R'HK index distribution vs age established on a large sample of solar-type dwarfs in open clusters. We also compared the chromospheric activity level of this young star with a model of chromospheric activity evolution established by combining relationships between the R'HK index and the Rossby number with a recent model of stellar rotation evolution on the main sequence. Results: We measure the spot coverage of the stellar surface as a function of time and find evidence for a tentative increase from 5 - 14% at the beginning of the observing run to 13-29% 35 days later. A high level of magnetic activity on Corot 102899501 is corroborated by a strong emission in the Balmer and Ca ii H and K lines (R'HK ~ -4). The starspots used as tracers of the star rotation constrain the rotation period to 1.625 ± 0.002 days and do not show evidence for differential rotation. The effective temperature (Teff = 5180 ± 80 K), surface gravity (log g = 4.35 ± 0.1), and metallicity ([M/H] = 0.05 ± 0.07 dex) indicate that the object is located near the evolutionary track of a 1.09 ± 0.12 M⊙ pre-main sequence star at an age of 23 ± 10 Myr. This value is consistent with the "gyro-age" of about 8-25 Myr

  3. A characteristic time sequence of epileptic activity in EEG during dynamic penicillin-induced focal epilepsy--a preliminary study.

    PubMed

    Silfverhuth, Minna J; Kortelainen, Jukka; Ruohonen, Jyrki; Suominen, Kalervo; Niinimäki, Jaakko; Sonkajärvi, Eila; Kiviniemi, Vesa; Alahuhta, Seppo; Jäntti, Ville; Tervonen, Osmo; Seppänen, Tapio

    2011-09-01

    Penicillin-induced focal epilepsy is a well-known model in experimental epilepsy. However, the dynamic evolution of waveforms, DC-level changes, spectral content and coherence are rarely reported. Stimulated by earlier fMRI findings, we also seek for the early signs preceding spiking activity from frequency domain of EEG signal. In this study, EEG data is taken from previous EEG/fMRI series (six pigs, 20-24kg) of an experimental focal epilepsy model, which includes dynamic induction of epileptic activity with penicillin (6000IU) injection into the somatosensory cortex during deep isoflurane anaesthesia. No ictal discharges were recorded with this dose. Spike waveforms, DC-level, time-frequency content and coherence of EEG were analysed. Development of penicillin induced focal epileptic activity was not preceded with specific spectral changes. The beginning of interictal spiking was related to power increase in the frequencies below 6Hz or 20Hz, and continued to a widespread spectral increase. DC-level and coherence changes were clear in one animal. Morphological evolution of epileptic activity was a collection of the low-amplitude monophasic, bipolar, triple or double spike-wave forms, with an increase in amplitude, up to large monophasic spiking. In conclusion, in the time sequence of induced epileptic activity, immediate shifts in DC-level EEG are plausible, followed by the spike activity-related widespread increase in spectral content. Morphological evolution does not appear to follow a clear continuum; rather, intermingled and variable spike or multispike waveforms generally lead to stabilised activity of high-amplitude monophasic spikes. PMID:21511498

  4. Aeronautics Research Mission Directorate Integrated Systems Research Program (ISRP) and UAS Integration in the NAS Project

    NASA Technical Reports Server (NTRS)

    Wolfe, Jean

    2010-01-01

    Program Goal: Conduct research at an integrated system-level on promising concepts and technologies and explore, assess, or demonstrate the benefits in a relevant environment.Criteria for selection of projects for Integrated Systems Research: a) Technology has attained enough maturity in the foundational research program that they merit more in-depth evaluation at an integrated system level in a relevant environment. b) Technologies which systems analysis indicates have the most potential for contributing to the simultaneous attainment of goals. c) Technologies identified through stakeholder input as having potential for simultaneous attainment of goals. d) Research not being done by other government agencies and appropriate for NASA to conduct. e) Budget augmentation. Environmentally Responsible Aviation (ERA) Project Explore and assess new vehicle concepts and enabling technologies through system-level experimentation to simultaneously reduce fuel burn, noise, and emissions Unmanned Aircraft Systems (UAS) Integration in the National Airspace System (NAS) Project Contribute capabilities that reduce technical barriers related to the safety and operational challenges associated with enabling routine UAS access to the NAS Innovative Concepts for Green Aviation (ICGA) Project Spur innovation by offering research opportunities to the broader aeronautics community through peer-reviewed proposals, with a focus on making aviation more eco-friendly. Establish incentive prizes similar to the Centennial Challenges and sponsor innovation demonstrations of selected technologies that show promise of reducing aviation s impact on the environment

  5. Unsteady Aerodynamic and Dynamic Analysis of the Meridian UAS in a Rolling-Yawing Motion

    NASA Astrophysics Data System (ADS)

    Lykins, Ryan

    The nonlinear and unsteady aerodynamic effects of operating the Meridian unmanned aerial system (UAS) in crosswinds and at high angular rates is investigated in this work. The Meridian UAS is a large autonomous aircraft, with a V-tail configuration, operated in Polar Regions for the purpose of remotely measuring ice sheet thickness. The inherent nonlinear coupling produced by the V-tail, along with the strong atmospheric disturbances, has made classical model identification methods inadequate for proper model development. As such, a powerful tool known as Fuzzy Logic Modeling (FLM) was implemented to generate time-dependent, nonlinear, and unsteady aerodynamic models using flight test data collected in Greenland in 2011. Prior to performing FLM, compatibility analysis is performed on the data, for the purpose of systematic bias removal and airflow angle estimation. As one of the advantages of FLM is the ability to model unsteady aerodynamics, the reduced frequency for both longitudinal and lateral-directional motions is determined from the unbiased data, using Theodorsen's theory of unsteadiness, which serves as an input parameter in modeling. These models have been used in this work to identify pilot induced oscillations, unsteady coupling motions, unsteady motion due to the slipstream and cross wind interaction, and destabilizing motions and orientations. This work also assesses the accuracy of preliminary aircraft dynamic models developed using engineering level software, and addresses the autopilot Extended Kalman Filter state estimations.

  6. Validation of Spaceborne Radar Surface Water Mapping with Optical sUAS Images

    NASA Astrophysics Data System (ADS)

    Li-Chee-Ming, J.; Murnaghan, K.; Sherman, D.; Poncos, V.; Brisco, B.; Armenakis, C.

    2015-08-01

    The Canada Centre for Remote Sensing (CCRS) has over 40 years of experience with airborne and spaceborne sensors and is now starting to use small Unmanned Aerial Systems (sUAS) to validate products from large coverage area sensors and create new methodologies for very high resolution products. Wetlands have several functions including water storage and retention which can reduce flooding and provide continuous flow for hydroelectric generation and irrigation for agriculture. Synthetic Aperture Radar is well suited as a tool for monitoring surface water by supplying acquisitions irrespective of cloud cover or time of day. Wetlands can be subdivided into three classes: open water, flooded vegetation and upland which can vary seasonally with time and water level changes. RADARSAT-2 data from the Wide-Ultra Fine, Spotlight and Fine Quad-Pol modes has been used to map the open water in the Peace-Athabasca Delta, Alberta using intensity thresholding. We also use spotlight modes for higher resolution and the fully polarimetric mode (FQ) for polarimetric decomposition. Validation of these products will be done using a low altitude flying sUAS to generate optical georeferenced images. This project provides methodologies which could be used for flood mapping as well as ecological monitoring.

  7. Preliminary study of a millimeter wave FMCW InSAR for UAS indoor navigation.

    PubMed

    Scannapieco, Antonio F; Renga, Alfredo; Moccia, Antonio

    2015-01-01

    Small autonomous unmanned aerial systems (UAS) could be used for indoor inspection in emergency missions, such as damage assessment or the search for survivors in dangerous environments, e.g., power plants, underground railways, mines and industrial warehouses. Two basic functions are required to carry out these tasks, that is autonomous GPS-denied navigation with obstacle detection and high-resolution 3Dmapping with moving target detection. State-of-the-art sensors for UAS are very sensitive to environmental conditions and often fail in the case of poor visibility caused by dust, fog, smoke, flames or other factors that are met as nominal mission scenarios when operating indoors. This paper is a preliminary study concerning an innovative radar sensor based on the interferometric Synthetic Aperture Radar (SAR) principle, which has the potential to satisfy stringent requirements set by indoor autonomous operation. An architectural solution based on a frequency-modulated continuous wave (FMCW) scheme is proposed after a detailed analysis of existing compact and lightweight SAR. A preliminary system design is obtained, and the main imaging peculiarities of the novel sensor are discussed, demonstrating that high-resolution, high-quality observation of an assigned control volume can be achieved. PMID:25621606

  8. UAS-based automatic bird count of a common gull colony

    NASA Astrophysics Data System (ADS)

    Grenzdörffer, G. J.

    2013-08-01

    The standard procedure to count birds is a manual one. However a manual bird count is a time consuming and cumbersome process, requiring several people going from nest to nest counting the birds and the clutches. High resolution imagery, generated with a UAS (Unmanned Aircraft System) offer an interesting alternative. Experiences and results of UAS surveys for automatic bird count of the last two years are presented for the bird reserve island Langenwerder. For 2011 1568 birds (± 5%) were detected on the image mosaic, based on multispectral image classification and GIS-based post processing. Based on the experiences of 2011 the results and the accuracy of the automatic bird count 2012 became more efficient. For 2012 1938 birds with an accuracy of approx. ± 3% were counted. Additionally a separation of breeding and non-breeding birds was performed with the assumption, that standing birds cause a visible shade. The final section of the paper is devoted to the analysis of the 3D-point cloud. Thereby the point cloud was used to determine the height of the vegetation and the extend and depth of closed sinks, which are unsuitable for breeding birds.

  9. Automatic Extraction of Small Spatial Plots from Geo-Registered UAS Imagery

    NASA Astrophysics Data System (ADS)

    Cherkauer, Keith; Hearst, Anthony

    2015-04-01

    Accurate extraction of spatial plots from high-resolution imagery acquired by Unmanned Aircraft Systems (UAS), is a prerequisite for accurate assessment of experimental plots in many geoscience fields. If the imagery is correctly geo-registered, then it may be possible to accurately extract plots from the imagery based on their map coordinates. To test this approach, a UAS was used to acquire visual imagery of 5 ha of soybean fields containing 6.0 m2 plots in a complex planting scheme. Sixteen artificial targets were setup in the fields before flights and different spatial configurations of 0 to 6 targets were used as Ground Control Points (GCPs) for geo-registration, resulting in a total of 175 geo-registered image mosaics with a broad range of geo-registration accuracies. Geo-registration accuracy was quantified based on the horizontal Root Mean Squared Error (RMSE) of targets used as checkpoints. Twenty test plots were extracted from the geo-registered imagery. Plot extraction accuracy was quantified based on the percentage of the desired plot area that was extracted. It was found that using 4 GCPs along the perimeter of the field minimized the horizontal RMSE and enabled a plot extraction accuracy of at least 70%, with a mean plot extraction accuracy of 92%. The methods developed are suitable for work in many fields where replicates across time and space are necessary to quantify variability.

  10. Experimental Optimization of a Free-to-Rotate Wing for Small UAS

    NASA Technical Reports Server (NTRS)

    Logan, Michael J.; DeLoach, Richard; Copeland, Tiwana; Vo, Steven

    2014-01-01

    This paper discusses an experimental investigation conducted to optimize a free-to-rotate wing for use on a small unmanned aircraft system (UAS). Although free-to-rotate wings have been used for decades on various small UAS and small manned aircraft, little is known about how to optimize these unusual wings for a specific application. The paper discusses some of the design rationale of the basic wing. In addition, three main parameters were selected for "optimization", wing camber, wing pivot location, and wing center of gravity (c.g.) location. A small apparatus was constructed to enable some simple experimental analysis of these parameters. A design-of-experiment series of tests were first conducted to discern which of the main optimization parameters were most likely to have the greatest impact on the outputs of interest, namely, some measure of "stability", some measure of the lift being generated at the neutral position, and how quickly the wing "recovers" from an upset. A second set of tests were conducted to develop a response-surface numerical representation of these outputs as functions of the three primary inputs. The response surface numerical representations are then used to develop an "optimum" within the trade space investigated. The results of the optimization are then tested experimentally to validate the predictions.

  11. Snow Depth Mapping at a Basin-Wide Scale in the Western Arctic Using UAS Technology

    NASA Astrophysics Data System (ADS)

    de Jong, T.; Marsh, P.; Mann, P.; Walker, B.

    2015-12-01

    Assessing snow depths across the Arctic has proven to be extremely difficult due to the variability of snow depths at scales from metres to 100's of metres. New Unmanned Aerial Systems (UAS) technology provides the possibility to obtain centimeter level resolution imagery (~3cm), and to create Digital Surface Models (DSM) based on the Structure from Motion method. However, there is an ongoing need to quantify the accuracy of this method over different terrain and vegetation types across the Arctic. In this study, we used a small UAS equipped with a high resolution RGB camera to create DSMs over a 1 km2 watershed in the western Canadian Arctic during snow (end of winter) and snow-free periods. To improve the image georeferencing, 15 Ground Control Points were marked across the watershed and incorporated into the DSM processing. The summer DSM was subtracted from the snowcovered DSM to deliver snow depth measurements across the entire watershed. These snow depth measurements were validated by over 2000 snow depth measurements. This technique has the potential to improve larger scale snow depth mapping across watersheds by providing snow depth measurements at a ~3 cm . The ability of mapping both shallow snow (less than 75cm) covering much of the basin and snow patches (up to 5 m in depth) that cover less than 10% of the basin, but contain a significant portion of total basin snowcover, is important for both water resource applications, as well as for testing snow models.

  12. Preliminary Study of a Millimeter Wave FMCW InSAR for UAS Indoor Navigation

    PubMed Central

    Scannapieco, Antonio F.; Renga, Alfredo; Moccia, Antonio

    2015-01-01

    Small autonomous unmanned aerial systems (UAS) could be used for indoor inspection in emergency missions, such as damage assessment or the search for survivors in dangerous environments, e.g., power plants, underground railways, mines and industrial warehouses. Two basic functions are required to carry out these tasks, that is autonomous GPS-denied navigation with obstacle detection and high-resolution 3D mapping with moving target detection. State-of-the-art sensors for UAS are very sensitive to environmental conditions and often fail in the case of poor visibility caused by dust, fog, smoke, flames or other factors that are met as nominal mission scenarios when operating indoors. This paper is a preliminary study concerning an innovative radar sensor based on the interferometric Synthetic Aperture Radar (SAR) principle, which has the potential to satisfy stringent requirements set by indoor autonomous operation. An architectural solution based on a frequency-modulated continuous wave (FMCW) scheme is proposed after a detailed analysis of existing compact and lightweight SAR. A preliminary system design is obtained, and the main imaging peculiarities of the novel sensor are discussed, demonstrating that high-resolution, high-quality observation of an assigned control volume can be achieved. PMID:25621606

  13. Toward a new tectonic model for the Late Proterozoic Araçuaí (SE Brazil)-West Congolian (SW Africa) Belt

    NASA Astrophysics Data System (ADS)

    Pedrosa-Soares, A. C.; Noce, C. M.; Vidal, Ph; Monteiro, R. L. B. P.; Leonardos, O. H.

    1992-08-01

    The Araçuaí Belt is a Late Proterozoic (Brasiliano Cycle) geotectonic unit which was developed along the southeastern margin of the São Francisco Craton (SE Brazil) and was formerly considered as being an ensialic orogen. It is correlated with the Pan-African West Congolian Belt (SW Africa) in many reports. In the western domain of the belt, the Macaúbas Group—the most important supracrustal sequence related to the evolution of the Araçuaí Belt —comprises the Terra Branca and Carbonita Formations, which consist of littoral glacial sediments to shelf turbidites. These formations grade upward and eastward to the Salinas Formation, consisting of distal turbidites related to submarine fans, pelagic sediments, and a rock association (the Ribeirão da Folha Facies) typical of an ocean-floor environment. Banded iron formations, metacherts, diopsidites, massive sulfides, graphite schists, hyperaluminous schists, and ortho-amphibolites, intercalated with quartz-mica schists and impure quartzites, characterize the most distinctive and restricted volcano-sedimentary facies yet found within the Salinas Formation. Ultramafic slabs were tectonically emplaced within the Ribeirão da Folha Facies. Eight whole rock samples of meta-ultramafic rocks and ortho-amphibolites yielded a SmNd isochronic age of 793 ± 90 Ma ( ɛNd(T) = +4.1 ± 0.6. MSWD = 1.76 ). The structures of the northern Araçuaí Belt are marked by a doen-dip stretching lineation (western domain) related to frontal thrusts which controlled tectonic transport from east to west; stretching lineation rakes decrease in the eastern tectonic domain, indicating dominant oblique to transcurrent motion; the northern arch of the belt is characterized by major high-dip transcurrent shear zones. Our tectonic model starts with marked fracturing, followed by rifting that took place in the São Francisco-Congo Craton around 1000 ± 100 Ma (ages of basic intrusions and alkaline anorogenic granites). A sinistral transfer

  14. Genome-Based Identification of Active Prophage Regions by Next Generation Sequencing in Bacillus licheniformis DSM13

    PubMed Central

    Hertel, Robert; Rodríguez, David Pintor; Hollensteiner, Jacqueline; Dietrich, Sascha; Leimbach, Andreas; Hoppert, Michael; Liesegang, Heiko; Volland, Sonja

    2015-01-01

    Prophages are viruses, which have integrated their genomes into the genome of a bacterial host. The status of the prophage genome can vary from fully intact with the potential to form infective particles to a remnant state where only a few phage genes persist. Prophages have impact on the properties of their host and are therefore of great interest for genomic research and strain design. Here we present a genome- and next generation sequencing (NGS)-based approach for identification and activity evaluation of prophage regions. Seven prophage or prophage-like regions were identified in the genome of Bacillus licheniformis DSM13. Six of these regions show similarity to members of the Siphoviridae phage family. The remaining region encodes the B. licheniformis orthologue of the PBSX prophage from Bacillus subtilis. Analysis of isolated phage particles (induced by mitomycin C) from the wild-type strain and prophage deletion mutant strains revealed activity of the prophage regions BLi_Pp2 (PBSX-like), BLi_Pp3 and BLi_Pp6. In contrast to BLi_Pp2 and BLi_Pp3, neither phage DNA nor phage particles of BLi_Pp6 could be visualized. However, the ability of prophage BLi_Pp6 to generate particles could be confirmed by sequencing of particle-protected DNA mapping to prophage locus BLi_Pp6. The introduced NGS-based approach allows the investigation of prophage regions and their ability to form particles. Our results show that this approach increases the sensitivity of prophage activity analysis and can complement more conventional approaches such as transmission electron microscopy (TEM). PMID:25811873

  15. The 2009 L'Aquila earthquake sequence: technical and scientific activities during the emergency and post-emergency phases

    NASA Astrophysics Data System (ADS)

    Cardinali, Mauro

    2010-05-01

    The Central Apennines of Italy is an area characterized by significant seismic activity. In this area, individual earthquakes and prolonged seismic sequences produce a variety of ground effects, including landslides. The L'Aquila area, in the Abruzzo Region, was affected by an earthquake sequence that started on December 2008, and continued for several months. The main shock occurred on April 6, 2009, with local magnitude m = 6.3, and was followed by two separate earthquakes on April 7 and April 9, each with a local magnitude m > 5.0. The main shocks caused 308 fatalities, injured more than 1500 people, and left in excess of 65,000 people homeless. Damage to the cultural heritage was also severe, with tens of churches and historical buildings severely damaged or destroyed. The main shocks and some of the most severe aftershocks triggered landslides, chiefly rock falls and minor rock slides that caused damage to towns, individual houses, and the transportation network. Beginning in the immediate aftermath of the event, and continuing during the emergency and post-emergency phases, we assisted the Italian national Department for Civil Protection in the evaluation of local landslide and hydrological risk conditions. Technical and scientific activities focused on: (i) mapping the location, type, and severity of the main ground effects produced by the earthquake shaking, (ii) evaluating and selecting sites for potential new settlements and individual buildings, including a preliminary assessment of the local geomorphological and hydrological conditions; (iii) evaluating rock fall hazard at individual sites, (iv) monitoring slope and ground deformations, and (v) designing and implementing a prototype system for the forecast of the possible occurrence of rainfall-induced landslides. To execute these activates, we exploited a wide range of methods, techniques, and technologies, and we performed repeated field surveys, the interpretation of ground and aerial photographs

  16. Communications Technology Assessment for the Unmanned Aircraft System (UAS) Control and Non-Payload Communications (CNPC) Link

    NASA Technical Reports Server (NTRS)

    Bretmersky, Steven C.; Bishop, William D.; Dailey, Justin E.; Chevalier, Christine T.

    2014-01-01

    The National Aeronautics and Space Administration (NASA) Glenn Research Center (GRC) is performing communications systems research for the Unmanned Aircraft System (UAS) in the National Airspace System (NAS) Project. One of the goals of the communications element is to select and test a communications technology for the UAS Control and Non-Payload Communications (CNPC) link. The GRC UAS Modeling and Simulation (M/S) Sub Team will evaluate the performance of several potential technologies for the CNPC link through detailed software simulations. In parallel, an industry partner will implement a technology in hardware to be used for flight testing. The task necessitated a technical assessment of existing Radio Frequency (RF) communications technologies to identify the best candidate systems for use as the UAS CNPC link. The assessment provides a basis for selecting the technologies for the M/S effort and the hardware radio design. The process developed for the technical assessments for the Future Communications Study1 (FCS) was used as an initial starting point for this assessment. The FCS is a joint Federal Aviation Administration (FAA) and Eurocontrol study on technologies for use as a future aeronautical communications link. The FCS technology assessment process methodology can be applied to the UAS CNPC link; however the findings of the FCS are not directly applicable because of different requirements between a CNPC link and a general aeronautical data link. Additional technologies were added to the potential technologies list from the State of the Art Unmanned Aircraft System Communication Assessment developed by NASA GRC2. This document investigates the state of the art of communications as related to UAS. A portion of the document examines potential communications systems for a UAS communication architecture. Like the FCS, the state of the art assessment surveyed existing communications technologies. It did not, however, perform a detailed assessment of the

  17. Application of UAS photogrammetry for assessment of flood driven fluvial dynamics of montane stream. Case study - Roklansky creek, Sumava Mts.

    NASA Astrophysics Data System (ADS)

    Langhammer, Jakub; Miřijovský, Jakub; Hartvich, Filip; Kaiglová, Jana

    2014-05-01

    Current progress in hydrology and fluvial geomorphology is largely based on new field survey and analysis techniques, employing advanced technologies for monitoring the dynamics of the runoff process, field surveying and for remote monitoring of changes in riverbeds and of fluvial dynamics. Application of these techniques allows researchers to obtain information on a significantly higher qualitative level than using traditional methods of field survey and measurement, either in terms of spatial accuracy and resolution, frequency of sampling or qualitative characteristics of acquired data. The contribution demonstrates the potential of Unmanned Aerial Systems (UAS) for analysis of fluvial dynamics of montane stream, driven by flood in combination with other survey techniques, namely the ground LiDAR scanning, digital granulometry and automated water level monitoring. The UAS photogrammetry is employed in the study to acquire high precision DTMs, enabling reconstruction of riverbed and quantitative analysis of volumetric changes related to initial flood events. The hexacopter UAS platform has been used to acquire the data for photogrammetric analysis of complex stretch of stream with historically elevated fluvial dynamics. The photogrammetric reconstruction enabled to build accurate DTM of riverbed and floodplain before and after the initial event and to calculate the extent of volumetric changes. The potential of UAS photogrammetry for fluvio morphological study is in combination with other monitoring and survey techniques, enabling complex analysis of fluvial dynamics. The magnitude, duration and hydrological properties of initial flood event were derived from automated high frequency water level monitoring. The digital granulometry enabled to analyze the structure of sedimentary material in floodplain. The terrestrial LiDAR scanning allows construction of very detailed 3D models of selected fluvial forms, enabling deeper insight into the effects of fluvial

  18. Effects of adsorbents and copper(II) on activated sludge microorganisms and sequencing batch reactor treatment process.

    PubMed

    Ong, S A; Lim, P E; Seng, C E

    2003-10-31

    Wastewater treatment systems employing simultaneous adsorption and biodegradation processes have proven to be effective in treating toxic pollutants present in industrial wastewater. The objective of this study is to evaluate the effect of Cu(II) and the efficacy of the powdered activated carbon (PAC) and activated rice husk (ARH) in reducing the toxic effect of Cu(II) on the activated sludge microorganisms. The ARH was prepared by treatment with concentrated nitric acid for 15 h at 60-65 degrees C. The sequencing batch reactor (SBR) systems were operated with FILL, REACT, SETTLE, DRAW and IDLE modes in the ratio of 0.5:3.5:1:0.75:0.25 for a cycle time of 6 h. The Cu(II) and COD removal efficiency were 90 and 85%, respectively, in the SBR system containing 10 mg/l Cu(II) with the addition of 143 mg/l PAC or 1.0 g PAC per cycle. In the case of 715 mg/l ARH or 5.0 g ARH per cycle addition, the Cu(II) and COD removal efficiency were 85 and 92%, respectively. ARH can be used as an alternate adsorbent to PAC in the simultaneous adsorption and biodegradation wastewater treatment process for the removal of Cu(II). The specific oxygen uptake rate (SOUR) and kinetic studies show that the addition of PAC and ARH reduce the toxic effect of Cu(II) on the activated sludge microorganisms. PMID:14573344

  19. The effects of sleep, wake activity and time-on-task on offline motor sequence learning.

    PubMed

    Landry, Shane; Anderson, Clare; Conduit, Russell

    2016-01-01

    While intervening sleep promotes the consolidation of memory, it is well established that cognitive interference from competing stimuli can impede memory retention. The current study examined changes in motor skill learning across periods of wakefulness with and without competing stimuli, and periods of sleep with and without disruption from external stimuli. A napping study design was adopted where participants (N=44) either had (1) a 30min nap composed of Non-Rapid Eye Movement (NREM) sleep, (2) 30min NREM nap fragmented by audio tone induced arousals, (3) 45min of quiet wakefulness, or (4) 45min of active wakefulness. Measures of subjective sleepiness (KSS), alertness (PVT) and motor skill learning (Sequential Finger Tapping Task, SFTT) were completed in the morning and evening to assess performance pre- and post-nap or wakefulness. Following a practice session, change in motor skill performance was measured over a 10min post training rest interval, as well as following a 7h morning to evening interval comprising one of the four study conditions. A significant offline enhancement in motor task performance (13-23%) was observed following 10min of rest in all conditions. Following the long delay with the intervening nap/wake condition, there were no further offline gains or losses in performance in any sleep (uninterrupted/fragmented) or wake (quiet/active) condition. The current findings suggest that after controlling for offline gains in performance that occur after a brief rest and likely to due to the dissipation of fatigue, the subsequent effect of an intervening sleep or wake period on motor skill consolidation is not significant. Consistent with this null result, the impact of disrupting the sleep episode or manipulating activity during intervening wake also appears to be negligible. PMID:26655281

  20. Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

    PubMed Central

    Orsi, William; Biddle, Jennifer F.; Edgcomb, Virginia

    2013-01-01

    The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Because DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA) is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA by amplicon pyrosequencing, unique profiles of Fungi were found across a range of marine subsurface provinces including ridge flanks, continental margins, and abyssal plains. Subseafloor fungal populations exhibit statistically significant correlations with total organic carbon (TOC), nitrate, sulfide, and dissolved inorganic carbon (DIC). These correlations are supported by terminal restriction length polymorphism (TRFLP) analyses of fungal rRNA. Geochemical correlations with fungal pyrosequencing and TRFLP data from this geographically broad sample set suggests environmental selection of active Fungi in the marine subsurface. Within the same dataset, ancient rRNA signatures were recovered from plants and diatoms in marine sediments ranging from 0.03 to 2.7 million years old, suggesting that rRNA from some eukaryotic taxa may be much more stable than previously considered in the marine subsurface. PMID:23418556

  1. Myoelectric activity and sequencing of selected trunk muscles during isokinetic lifting.

    PubMed

    Noe, D A; Mostardi, R A; Jackson, M E; Porterfield, J A; Askew, M J

    1992-02-01

    Trained weight lifters lift heavy loads without a concomitant degree of acute low-back injuries. To study the process by which large loads are lifted with minimal injury, integrated electromyographic signals were recorded from four large muscle groups: gluteus maximus, quadriceps, latissimus dorsi, and erector spinae in 4 weight lifters and 11 asymptomatic control subjects. These signals were recorded during a floor-to-knuckle-height isokinetic lift (dead lift) at 30.5 and 45.7 cm/sec. The signals were normalized for the height of the lift and the maximal isokinetic integrated electromyographic activity. The weight lifters achieved maximal force at 50% of maximal lift height, whereas the control subjects achieved it at 67%. Although not statistically significant, the weight lifters used the gluteus maximus more during the early stages of the lift, perhaps contributing to earlier development of force. This process would stabilize the pelvis and permit the erector spinae to extend the trunk more efficiently. The weight lifter then completed the lift with prolonged and increasing activity in the quadriceps. This technique may minimize the required force in the erector spinae and the forces on the low-back structures. Clinical implications include more effective strength training of lifting muscle groups other than spinal extensors and the teaching of lifting strategies employed by weight lifters in low-back rehabilitation and work-hardening programs. PMID:1532462

  2. Sequence variation determining stereochemistry of a Δ11 desaturase active in moth sex pheromone biosynthesis.

    PubMed

    Ding, Bao-Jian; Carraher, Colm; Löfstedt, Christer

    2016-07-01

    A Δ11 desaturase from the oblique banded leaf roller moth Choristoneura rosaceana takes the saturated myristic acid and produces a mixture of (E)-11-tetradecenoate and (Z)-11-tetradecenoate with an excess of the Z isomer (35:65). A desaturase from the spotted fireworm moth Choristoneura parallela also operates on myristic acid substrate but produces almost pure (E)-11-tetradecenoate. The two desaturases share 92% amino acid identity and 97% amino acid similarity. There are 24 amino acids differing between these two desaturases. We constructed mutations at all of these positions to pinpoint the sites that determine the product stereochemistry. We demonstrated with a yeast functional assay that one amino acid at the cytosolic carboxyl terminus of the protein (258E) is critical for the Z activity of the C. rosaceana desaturase. Mutating the glutamic acid (E) into aspartic acid (D) transforms the C. rosaceana enzyme into a desaturase with C. parallela-like activity, whereas the reciprocal mutation of the C. parallela desaturase transformed it into an enzyme producing an intermediate 64:36 E/Z product ratio. We discuss the causal link between this amino acid change and the stereochemical properties of the desaturase and the role of desaturase mutations in pheromone evolution. PMID:27163509

  3. Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.

    PubMed

    Shain, A Hunter; Garrido, Maria; Botton, Thomas; Talevich, Eric; Yeh, Iwei; Sanborn, J Zachary; Chung, Jongsuk; Wang, Nicholas J; Kakavand, Hojabr; Mann, Graham J; Thompson, John F; Wiesner, Thomas; Roy, Ritu; Olshen, Adam B; Gagnon, Alexander; Gray, Joe W; Huh, Nam; Hur, Joe S; Busam, Klaus J; Scolyer, Richard A; Cho, Raymond J; Murali, Rajmohan; Bastian, Boris C

    2015-10-01

    Desmoplastic melanoma is an uncommon variant of melanoma with sarcomatous histology, distinct clinical behavior and unknown pathogenesis. We performed low-coverage genome and high-coverage exome sequencing of 20 desmoplastic melanomas, followed by targeted sequencing of 293 genes in a validation cohort of 42 cases. A high mutation burden (median of 62 mutations/Mb) ranked desmoplastic melanoma among the most highly mutated cancers. Mutation patterns strongly implicate ultraviolet radiation as the dominant mutagen, indicating a superficially located cell of origin. Newly identified alterations included recurrent promoter mutations of NFKBIE, encoding NF-κB inhibitor ɛ (IκBɛ), in 14.5% of samples. Common oncogenic mutations in melanomas, in particular in BRAF (encoding p.Val600Glu) and NRAS (encoding p.Gln61Lys or p.Gln61Arg), were absent. Instead, other genetic alterations known to activate the MAPK and PI3K signaling cascades were identified in 73% of samples, affecting NF1, CBL, ERBB2, MAP2K1, MAP3K1, BRAF, EGFR, PTPN11, MET, RAC1, SOS2, NRAS and PIK3CA, some of which are candidates for targeted therapies. PMID:26343386

  4. Active deformation and engineering analysis of CFRP mirror of various lay-up sequences within quasi-isotropic laminates

    NASA Astrophysics Data System (ADS)

    Zeng, Chunmei; Yu, Xia; Guo, Peiji

    2014-08-01

    A regularization stiffness coefficient method was verified further to optimize lay-up sequences of quasi-isotropic laminates for carbon fiber reinforced polymer (CFRP) composite mirrors. Firstly, the deformation due to gravity of 1G and temperature difference of 20-100°C and the modal were analyzed by finite element method (FEM). Secondly, the influence of angle error of ply stacking on quasi-isotropic of bending stiffness was evaluated. Finally, an active support system of 49 actuators in circular arrangement is designed for a 500mm CFRP mirror, and its goal is to deform the spherical CFRP mirror to a parabolic. Therefore, the response functions of the actuators were gotten, and the surface form errors and stresses were calculated and analyzed. The results show that the CFRP mirrors designed by the method have a better symmetrical bending deformation under gravity and thermal load and a higher fundamental frequency, and the larger n the better symmetry (for π/n quasi-isotropic laminates); the method reduces the sensitivity to misalignment of ply orientation for symmetric bending, and the mirror's maximum von Mises stress and maximum shear stress are less compared to those laminates not optimized in lay-up sequence.

  5. Memory formation: the sequence of biochemical events in the hippocampus and its connection to activity in other brain structures.

    PubMed

    Izquierdo, I; Medina, J H

    1997-11-01

    Recent data have demonstrated a biochemical sequence of events in the rat hippocampus that is necessary for memory formation of inhibitory avoidance behavior. The sequence initially involves the activation of three different types of glutamate receptors followed by changes in second messengers and biochemical cascades led by enhanced activity of protein kinases A, C, and G and calcium-calmodulin protein kinase II, followed by changes in glutamate receptor subunits and binding properties and increased expression of constitutive and inducible transcription factors. The biochemical events are regulated early after training by hormonal and neurohumoral mechanisms related to alertness, anxiety, and stress, and 3-6 h after training by pathways related to mood and affect. The early modulation is mediated locally by GABAergic, cholinergic, and noradrenergic synapses and by putative retrograde synaptic messengers, and extrinsically by the amygdala and possibly the medial septum, which handle emotional components of memories and are direct or indirect sites of action for several hormones and neurotransmitters. The late modulation relies on dopamine D1, beta-noradrenergic, and 5HT1A receptors in the hippocampus and dopaminergic, noradrenergic, and serotoninergic pathways. Evidence indicates that hippocampal activity mediated by glutamate AMPA receptors must persist during at least 3 h after training in order for memories to be consolidated. Probably, this activity is transmitted to other areas, including the source of the dopaminergic, noradrenergic, and serotoninergic pathways, and the entorhinal and posterior parietal cortex. The entorhinal and posterior parietal cortex participate in memory consolidation minutes after the hippocampal chain of events starts, in both cases through glutamate NMDA receptor-mediated processes, and their intervention is necessary in order to complete memory consolidation. The hippocampus, amygdala, entorhinal cortex, and parietal cortex are

  6. LEU3 of Saccharomyces cerevisiae activates multiple genes for branched-chain amino acid biosynthesis by binding to a common decanucleotide core sequence

    SciTech Connect

    Friden, P.; Schimmel, P.

    1988-07-01

    LEU3 of Saccharomyces cerevisiae encodes an 886-amino-acid polypeptide that regulates transcription of a group of genes involved in leucine biosynthesis and has been shown to bind specifically to a 114-base-pair DNA fragment of the LEU2 upstream region. The authors show here that, in addition to LEU2, LEU3 binds in vitro to sequences in the promoter regions of LEU1, LEU4, ILV2, and, by inference, ILV5. The largely conserved decanucleotide core sequence shared by the binding sites in these genes is CCGGNNCCGG. Methylation interference footprinting experiements show that LEU 3 makes symmetrical contacts with the conserved bases that lie in the major groove. Synthetic oligonucleides (19 to 29 base pairs) which contain the core decanucleotide and flanking sequences of LEU1, LEU2, LEU4, and ILV2 have individually been placed upstream of a LEU3-insensitive test promoter. The expression of each construction is activated by LEU3, although the degree of activation varies considerably according to the specific oligonucleotide which is introduced. A promoter construction with substitutions in the core sequence remains LEU3 insensitive, however. One of the oligonucleotides (based on a LEU2 sequence) was also tested and shown to confer leucine-sensitive expression on the test promoter. The results demonstrate that only a short sequence element is necessary for LEU3-dependent promoter binding and activation and provide direct evidence for an expanded repertoire of genes that are activated by LEU3.

  7. Murine cystathionine γ-lyase: complete cDNA and genomic sequences, promoter activity, tissue distribution and developmental expression

    PubMed Central

    2004-01-01

    Cystathionine γ-lyase (CSE) is the last key enzyme in the trans-sulphuration pathway for biosynthesis of cysteine from methionine. Cysteine could be provided through diet; however, CSE has been shown to be important for the adequate supply of cysteine to synthesize glutathione, a major intracellular antioxidant. With a view to determining physiological roles of CSE in mice, we report the sequence of a complete mouse CSE cDNA along with its associated genomic structure, generation of specific polyclonal antibodies, and the tissue distribution and developmental expression patterns of CSE in mice. A 1.8 kb full-length cDNA containing an open reading frame of 1197 bp, which encodes a 43.6 kDa protein, was isolated from adult mouse kidney. A 35 kb mouse genomic fragment was obtained by λ genomic library screening. It contained promoter regions, 12 exons, ranging in size from 53 to 579 bp, spanning over 30 kb, and exon/intron boundaries that were conserved with rat and human CSE. The GC-rich core promoter contained canonical TATA and CAAT motifs, and several transcription factor-binding consensus sequences. The CSE transcript, protein and enzymic activity were detected in liver, kidney, and, at much lower levels, in small intestine and stomach of both rats and mice. In developing mouse liver and kidney, the expression levels of CSE protein and activity gradually increased with age until reaching their peak value at 3 weeks of age, following which the expression levels in liver remained constant, whereas those in kidney decreased significantly. Immunohistochemical analyses revealed predominant CSE expression in hepatocytes and kidney cortical tubuli. These results suggest important physiological roles for CSE in mice. PMID:15038791

  8. Stress gene (hsp70) sequences and quantitative expression in Milnesium tardigradum (Tardigrada) during active and cryptobiotic stages.

    PubMed

    Schill, Ralph O; Steinbrück, Günther H B; Köhler, Heinz-R

    2004-04-01

    The eutardigrade Milnesium tardigradum can undergo cryptobiosis, i.e. entry into a reversible ametabolic stage induced by dehydration, cooling and, probably, osmotic and anoxic stress. For the first time in tardigrades, we described partial sequences of three heat-shock protein (hsp70 family) genes and examined gene expression on the way from an active to a cryptobiotic and back to an active stage again. Results showed different patterns of gene expression in the hsp70 isoforms. All three isoforms seem to be true heat-shock proteins since transcription could be clearly enhanced by temperature elevation. Isoform 1 and, at a lower level, isoform 3 do not seem to have a specific function for cryptobiosis. By contrast, transcription of isoform 2 is significantly induced in the transitional stage between the active and the cryptobiotic stage, resulting in a comparatively high mRNA copy number also during cryptobiosis. This pattern of induction implies that isoform 2 is the most relevant hsp70 gene for M. tardigradum individuals entering the cryptobiotic stage. PMID:15073193

  9. Analysis of the peroxiredoxin family: using active site structure and sequence information for global classification and residue analysis

    PubMed Central

    Nelson, Kimberly J.; Knutson, Stacy T.; Soito, Laura; Klomsiri, Chananat; Poole, Leslie B.; Fetrow, Jacquelyn S.

    2010-01-01

    Peroxiredoxins (Prxs) are a widespread and highly expressed family of cysteine-based peroxidases that react very rapidly with H2O2, organic peroxides, and peroxynitrite. Correct subfamily classification has been problematic since Prx subfamilies are frequently not correlated with phylogenetic distribution and diverge in their preferred reductant, oligomerization state, and tendency towards overoxidation. We have developed a method that uses the Deacon Active Site Profiler (DASP) tool to extract functional site profiles from structurally characterized proteins, to computationally define subfamilies, and to identify new Prx subfamily members from GenBank(nr). For the 58 literature-defined Prx test proteins, 57 were correctly assigned and none were assigned to the incorrect subfamily. The >3500 putative Prx sequences identified were then used to analyze residue conservation in the active site of each Prx subfamily. Our results indicate that the existence and location of the resolving cysteine varies in some subfamilies (e.g. Prx5) to a greater degree than previously appreciated and that interactions at the A interface (common to Prx5, Tpx and higher order AhpC/Prx1 structures) are important for stabilization of the correct active site geometry. Interestingly, this method also allows us to further divide the AhpC/Prx1 into four groups that are correlated with functional characteristics. The DASP method provides more accurate subfamily classification than PSI-BLAST for members of the Prx family and can now readily be applied to other large protein families. PMID:21287625

  10. Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

    PubMed

    Pagán, Heidi J T; Macas, Jiří; Novák, Petr; McCulloch, Eve S; Stevens, Richard D; Ray, David A

    2012-01-01

    The repetitive landscapes of mammalian genomes typically display high Class I (retrotransposon) transposable element (TE) content, which usually comprises around half of the genome. In contrast, the Class II (DNA transposon) contribution is typically small (<3% in model mammals). Most mammalian genomes exhibit a precipitous decline in Class II activity beginning roughly 40 Ma. The first signs of more recently active mammalian Class II TEs were obtained from the little brown bat, Myotis lucifugus, and are reflected by higher genome content (~5%). To aid in determining taxonomic limits and potential impacts of this elevated Class II activity, we performed 454 survey sequencing of a second Myotis species as well as four additional taxa within the family Vespertilionidae and an outgroup species from Phyllostomidae. Graph-based clustering methods were used to reconstruct the major repeat families present in each species and novel elements were identified in several taxa. Retrotransposons remained the dominant group with regard to overall genome mass. Elevated Class II TE composition (3-4%) was observed in all five vesper bats, while less than 0.5% of the phyllostomid reads were identified as Class II derived. Differences in satellite DNA and Class I TE content are also described among vespertilionid taxa. These analyses present the first cohesive description of TE evolution across closely related mammalian species, revealing genome-scale differences in TE content within a single family. PMID:22491057

  11. Dodecyl Maltopyranoside Enabled Purification of Active Human GABA Type A Receptors for Deep and Direct Proteomic Sequencing*

    PubMed Central

    Zhang, Xi; Miller, Keith W.

    2015-01-01

    The challenge in high-quality membrane proteomics is all about sample preparation prior to HPLC, and the cell-to-protein step poses a long-standing bottleneck. Traditional protein extraction methods apply ionic or poly-disperse detergents, harsh denaturation, and repeated protein/peptide precipitation/resolubilization afterward, but suffer low yield, low reproducibility, and low sequence coverage. Contrary to attempts to subdue, we resolved this challenge by providing proteins nature-and-activity-promoting conditions throughout preparation. Using 285-kDa hetero-pentameric human GABA type A receptor overexpressed in HEK293 as a model, we describe a n-dodecyl-β-d-maltopyranoside/cholesteryl hemisuccinate (DDM/CHS)-based affinity purification method, that produced active receptors, supported protease activity, and allowed high performance with both in-gel and direct gel-free proteomic analyses—without detergent removal. Unlike conventional belief that detergents must be removed before HPLC MS, the high-purity low-dose nonionic detergent DDM did not interfere with peptides, and obviated removal or desalting. Sonication or dropwise addition of detergent robustly solubilized over 90% of membrane pellets. The purification conditions were comparable to those applied in successful crystallizations of most membrane proteins. These results enabled streamlined proteomics of human synaptic membrane proteins, and more importantly, allowed directly coupling proteomics with crystallography to characterize both static and dynamic structures of membrane proteins in crystallization pipelines. PMID:25473089

  12. Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

    PubMed Central

    2012-01-01

    Background The primary plant cell wall is a complex mixture of polysaccharides and proteins encasing living plant cells. Among these polysaccharides, cellulose is the most abundant and useful biopolymer present on earth. These polysaccharides also represent a rich source of energy for organisms which have evolved the ability to degrade them. A growing body of evidence suggests that phytophagous beetles, mainly species from the superfamilies Chrysomeloidea and Curculionoidea, possess endogenous genes encoding complex and diverse families of so-called plant cell wall degrading enzymes (PCWDEs). The presence of these genes in phytophagous beetles may have been a key element in their success as herbivores. Here, we combined a proteomics approach and transcriptome sequencing to identify PCWDEs present in larval gut contents of the mustard leaf beetle, Phaedon cochleariae. Results Using a two-dimensional proteomics approach, we recovered 11 protein bands, isolated using activity assays targeting cellulose-, pectin- and xylan-degrading enzymes. After mass spectrometry analyses, a total of 13 proteins putatively responsible for degrading plant cell wall polysaccharides were identified; these proteins belong to three glycoside hydrolase (GH) families: GH11 (xylanases), GH28 (polygalacturonases or pectinases), and GH45 (β-1,4-glucanases or cellulases). Additionally, highly stable and proteolysis-resistant host plant-derived proteins from various pathogenesis-related protein (PRs) families as well as polygalacturonase-inhibiting proteins (PGIPs) were also identified from the gut contents proteome. In parallel, transcriptome sequencing revealed the presence of at least 19 putative PCWDE transcripts encoded by the P. cochleariae genome. All of these were specifically expressed in the insect gut rather than the rest of the body, and in adults as well as larvae. The discrepancy observed in the number of putative PCWDEs between transcriptome and proteome analyses could be

  13. In vivo activity of epoxide hydrolase according to sequence variation affects the progression of human IgA nephropathy.

    PubMed

    Lee, Jung Pyo; Yang, Seung Hee; Kim, Dong Ki; Lee, Hajeong; Kim, Bora; Cho, Joo-Youn; Yu, Kyung-Sang; Paik, Jin Ho; Kim, Myounghee; Lim, Chun Soo; Kim, Yon Su

    2011-06-01

    Epoxyeicosatrienoic acid (EET) regulates the functional integrity of the endothelium. It is hypothesized that the activity of epoxide hydrolase (EPHX2), which determines EET concentration through hydrolysis, may affect the progression of glomerulonephritis. Here, we evaluated the relationship between genetic variations, the in vivo activity of EPHX2, and progression of IgA nephropathy (IgAN). Three single-nucleotide polymorphisms (SNPs) [rs41507953 (K55R), rs751141 (R287Q), and rs1042032] were traced in 401 IgAN patients and 402 normal healthy controls. The in vivo activity of EPHX2 was assessed by measuring substrates/metabolites of the enzyme. None of the polymorphism frequencies differed significantly between patients and controls. However, patients carrying the variant allele (A) of rs751141 possessed better kidney survival than those with the wild-type allele (G; P < 0.001). This association remained significant after adjustment for several risk factors (hazard ratio 1.83, 95% confidence interval 1.13-2.96, P = 0.014). Vascular damage was more prominent in kidney biopsies from patients carrying the G allele of rs751141. The in vivo activity of EPHX2, assessed by the epoxyoctadecenoic acid/dihydroxyoctadecenoic acid ratio using liquid chromatography/mass spectrometry analysis, was elevated in patients with the G allele. The expression of EPHX2 in the human kidney was independent of the sequence variation of the rs751141 allele. Variant rs41507953 was not present in this cohort, and rs1042032 was not associated with progression. Thus the specific measures which regulate EPHX2 activity should be designed for potential therapeutics. PMID:21429967

  14. The role of mechanical heterogeneities in evaporite sequence during deformation initiated by basement fault activity

    NASA Astrophysics Data System (ADS)

    Adamuszek, Marta; Dabrowski, Marcin; Burliga, Stanisław

    2016-04-01

    Kłodawa Salt Structure (KSS) situated in the centre of the Polish Zechstein Basin started to rise above a basement fault in the Early Triassic. Geological studies of the KSS revealed significant differences in the deformation patterns between the PZ1-PZ2 (intensely deformed) and PZ3-PZ4 (less deformed) cycle evaporites. These two older and two younger cycle evaporite complexes are separated by the thick Main Anhydrite (A3) bed. We use numerical simulations to assess the impact of a thick anhydrite bed on intrasalt deformation. In our models, the overburden consists of clastic sediments. A normal fault located in the rigid basement beneath the salt is activated due to model extension. At the same time, the sedimentation process takes place. The evaporites consist of a salt bed intercalated with a thick anhydrite layer of varying position and geometry. To understand the role of anhydrite layer, we run comparative simulations, in which no anhydrite layer is present. In the study, we use our own numerical codes implemented in MATLAB combined with the MILAMIN and MUTILS numerical packages. Our investigations revealed a significant influence of the anhydrite on deformation style in the evaporate series. The supra-anhydrite domain is characterized by weaker deformation and lower rates of salt flow in comparison to the sub-anhydrite domain. The highest contrast in the rate of salt flow between the two domains is observed in the case of the anhydrite layer situated close to the bottom of the salt complex. The thick anhydrite layer additionally diminishes the deformation rate in the supra-anhydrite domain and can lead to detachment of the basement deformation from its overlay. Our numerical simulations showed that the presence of the A3 Main Anhydrite bed could be the dominant factor responsible for the decoupling of deformation in the KSS salt complex.

  15. Selective anticancer activity of a hexapeptide with sequence homology to a non-kinase domain of Cyclin Dependent Kinase 4

    PubMed Central

    2011-01-01

    Background Cyclin-dependent kinases 2, 4 and 6 (Cdk2, Cdk4, Cdk6) are closely structurally homologous proteins which are classically understood to control the transition from the G1 to the S-phases of the cell cycle by combining with their appropriate cyclin D or cyclin E partners to form kinase-active holoenzymes. Deregulation of Cdk4 is widespread in human cancer, CDK4 gene knockout is highly protective against chemical and oncogene-mediated epithelial carcinogenesis, despite the continued presence of CDK2 and CDK6; and overexpresssion of Cdk4 promotes skin carcinogenesis. Surprisingly, however, Cdk4 kinase inhibitors have not yet fulfilled their expectation as 'blockbuster' anticancer agents. Resistance to inhibition of Cdk4 kinase in some cases could potentially be due to a non-kinase activity, as recently reported with epidermal growth factor receptor. Results A search for a potential functional site of non-kinase activity present in Cdk4 but not Cdk2 or Cdk6 revealed a previously-unidentified loop on the outside of the C'-terminal non-kinase domain of Cdk4, containing a central amino-acid sequence, Pro-Arg-Gly-Pro-Arg-Pro (PRGPRP). An isolated hexapeptide with this sequence and its cyclic amphiphilic congeners are selectively lethal at high doses to a wide range of human cancer cell lines whilst sparing normal diploid keratinocytes and fibroblasts. Treated cancer cells do not exhibit the wide variability of dose response typically seen with other anticancer agents. Cancer cell killing by PRGPRP, in a cyclic amphiphilic cassette, requires cells to be in cycle but does not perturb cell cycle distribution and is accompanied by altered relative Cdk4/Cdk1 expression and selective decrease in ATP levels. Morphological features of apoptosis are absent and cancer cell death does not appear to involve autophagy. Conclusion These findings suggest a potential new paradigm for the development of broad-spectrum cancer specific therapeutics with a companion diagnostic

  16. DNA Sequences at a Glance

    PubMed Central

    Pinho, Armando J.; Garcia, Sara P.; Pratas, Diogo; Ferreira, Paulo J. S. G.

    2013-01-01

    Data summarization and triage is one of the current top challenges in visual analytics. The goal is to let users visually inspect large data sets and examine or request data with particular characteristics. The need for summarization and visual analytics is also felt when dealing with digital representations of DNA sequences. Genomic data sets are growing rapidly, making their analysis increasingly more difficult, and raising the need for new, scalable tools. For example, being able to look at very large DNA sequences while immediately identifying potentially interesting regions would provide the biologist with a flexible exploratory and analytical tool. In this paper we present a new concept, the “information profile”, which provides a quantitative measure of the local complexity of a DNA sequence, independently of the direction of processing. The computation of the information profiles is computationally tractable: we show that it can be done in time proportional to the length of the sequence. We also describe a tool to compute the information profiles of a given DNA sequence, and use the genome of the fission yeast Schizosaccharomyces pombe strain 972 h− and five human chromosomes 22 for illustration. We show that information profiles are useful for detecting large-scale genomic regularities by visual inspection. Several discovery strategies are possible, including the standalone analysis of single sequences, the comparative analysis of sequences from individuals from the same species, and the comparative analysis of sequences from different organisms. The comparison scale can be varied, allowing the users to zoom-in on specific details, or obtain a broad overview of a long segment. Software applications have been made available for non-commercial use at http://bioinformatics.ua.pt/software/dna-at-glance. PMID:24278218

  17. DNA sequences at a glance.

    PubMed

    Pinho, Armando J; Garcia, Sara P; Pratas, Diogo; Ferreira, Paulo J S G

    2013-01-01

    Data summarization and triage is one of the current top challenges in visual analytics. The goal is to let users visually inspect large data sets and examine or request data with particular characteristics. The need for summarization and visual analytics is also felt when dealing with digital representations of DNA sequences. Genomic data sets are growing rapidly, making their analysis increasingly more difficult, and raising the need for new, scalable tools. For example, being able to look at very large DNA sequences while immediately identifying potentially interesting regions would provide the biologist with a flexible exploratory and analytical tool. In this paper we present a new concept, the "information profile", which provides a quantitative measure of the local complexity of a DNA sequence, independently of the direction of processing. The computation of the information profiles is computationally tractable: we show that it can be done in time proportional to the length of the sequence. We also describe a tool to compute the information profiles of a given DNA sequence, and use the genome of the fission yeast Schizosaccharomyces pombe strain 972 h(-) and five human chromosomes 22 for illustration. We show that information profiles are useful for detecting large-scale genomic regularities by visual inspection. Several discovery strategies are possible, including the standalone analysis of single sequences, the comparative analysis of sequences from individuals from the same species, and the comparative analysis of sequences from different organisms. The comparison scale can be varied, allowing the users to zoom-in on specific details, or obtain a broad overview of a long segment. Software applications have been made available for non-commercial use at http://bioinformatics.ua.pt/software/dna-at-glance. PMID:24278218

  18. In Situ Trace Gas Measurements from the Unmanned Aerial System (UAS) Altair

    NASA Astrophysics Data System (ADS)

    Hurst, D. F.; Moore, F. L.; Dutton, G. S.; Vasel, B.; Elkins, J. W.; Oltmans, S. J.; Summers, S.; Fahey, D. W.; Jennison, C. D.

    2006-12-01

    It is anticipated that Unmanned Aerial Systems (UASs) will soon become an integral part of the effort to monitor global atmospheric composition because they provide a unique combination of payload capacity, altitude range, and especially endurance. The NOAA UAS Demonstration Project in 2005 was designed to test the flight endurance of the Altair UAS (General Atomics Aeronautical Systems Inc.) and its suitability as an airborne platform for atmospheric measurements. Instrumentation included an ozone photometer (OZ), a 2- channel gas chromatograph (GC), an ocean color sensor, and a passive microwave vertical sounder. Altair was interactively controlled by a ground-based pilot via line-of-sight or satellite-based communications which also allowed instrument data and commands to be telemetered between the aircraft and ground. The NOAA project demonstrated that Altair was able to fly continuously for at least 18 hours and reach an altitude of 14 km with an internal payload >300 kg. The GC obtained ~2500 in situ measurements each of CFC-11, CFC-12, Halon-1211, N2O, and SF6 during 65 flight hours (10 flights) of Altair. These gases and ozone were measured at 250 m vertical resolution during two ~7 km deep spiral dive/climb maneuvers performed over the Pacific Ocean as part of the 18.4 long-endurance flight. During a different flight, GC and OZ sampled a tongue of stratospheric air that had intruded into the upper troposphere through a tropopause fold. In September 2006, GC and OZ were operated aboard Altair as part of the NASA/USDA-Forest Service Fire Mission. One GC channel (CFCs and Halon-1211) was changed to instead measure H2, CH4, and CO every 140 s, and the combined GC and OZ instrument package was expanded to include in situ measurements of water vapor (laser hygrometer) along with temperature and relative humidity (external probe). Data obtained during these two missions of the UAS Altair, including comparisons of relative humidity and water vapor measurements

  19. An Energy-Aware Trajectory Optimization Layer for sUAS

    NASA Astrophysics Data System (ADS)

    Silva, William A.

    The focus of this work is the implementation of an energy-aware trajectory optimization algorithm that enables small unmanned aircraft systems (sUAS) to operate in unknown, dynamic severe weather environments. The software is designed as a component of an Energy-Aware Dynamic Data Driven Application System (EA-DDDAS) for sUAS. This work addresses the challenges of integrating and executing an online trajectory optimization algorithm during mission operations in the field. Using simplified aircraft kinematics, the energy-aware algorithm enables extraction of kinetic energy from measured winds to optimize thrust use and endurance during flight. The optimization layer, based upon a nonlinear program formulation, extracts energy by exploiting strong wind velocity gradients in the wind field, a process known as dynamic soaring. The trajectory optimization layer extends the energy-aware path planner developed by Wenceslao Shaw-Cortez te{Shaw-cortez2013} to include additional mission configurations, simulations with a 6-DOF model, and validation of the system with flight testing in June 2015 in Lubbock, Texas. The trajectory optimization layer interfaces with several components within the EA-DDDAS to provide an sUAS with optimal flight trajectories in real-time during severe weather. As a result, execution timing, data transfer, and scalability are considered in the design of the software. Severe weather also poses a measure of unpredictability to the system with respect to communication between systems and available data resources during mission operations. A heuristic mission tree with different cost functions and constraints is implemented to provide a level of adaptability to the optimization layer. Simulations and flight experiments are performed to assess the efficacy of the trajectory optimization layer. The results are used to assess the feasibility of flying dynamic soaring trajectories with existing controllers as well as to verify the interconnections between

  20. cDNA cloning and structural characterization of a lectin from the mussel Crenomytilus grayanus with a unique amino acid sequence and antibacterial activity.

    PubMed

    Kovalchuk, Svetlana N; Chikalovets, Irina V; Chernikov, Oleg V; Molchanova, Valentina I; Li, Wei; Rasskazov, Valery A; Lukyanov, Pavel A

    2013-10-01

    An amino acid sequence of GalNAc/Gal-specific lectin from the mussel Crenomytilus grayanus (CGL) was determined by cDNA sequencing. CGL consists of 150 amino acid residues, contains three tandem repeats with high sequence similarities to each other (up to 73%) and does not belong to any known lectins family. According to circular dichroism results CGL is a β/α-protein with the predominance of β-structure. CGL was predicted to adopt a ß-trefoil fold. The lectin exhibits antibacterial activity and might be involved in the recognition and clearance of bacterial pathogens in the shellfish. PMID:23886951

  1. Sequence of Lacustrine Activity Within a Basin in Southwestern Melas Chasma, Mars

    NASA Astrophysics Data System (ADS)

    Williams, R. M.; Weitz, C. M.

    2013-12-01

    A perched basin located in southwestern Melas Chasma has widely been recognized as the site of a postulated paleolake. Valley networks converge from the east and west into an enclosed 30 x120 km basin and terminate in fan-shaped landforms. Fan deposits are interbedded with layered beds that are largely presumed to be lacustrine deposits. New details of the aqueous history in the Melas basin have been revealed from analysis of high-resolution image, topographic and spectral datasets from the THEMIS, HiRISE, HRSC, CTX, and CRISM instruments. We conducted a comprehensive examination of the diversity of fan-shaped landforms within the basin to characterize their morphology based on meter-scale images, evaluate their origin, and synthesize a history for the basin based on superposition relationships of the fans. Ten fan-shaped landforms have been identified which reflect various depositional environments and some fans reflect lake level(Figure 1). A distinctive megaripple marker bed, interpreted as aeolian bedforms, is within the lower levels of the exposed stratigraphic record. This observation, taken together with the stratigraphic succession of fan-shaped deposits, indicates fluctuating lake levels with, at a minimum, early and late-stage lake highstands. Landform scale was used to estimate average discharge (~30 m3/s), formative discharge (200-300 m3/s) and fan formation timescale, which further inform the duration of lacustrine activity within the basin. The synthesis of results from this study indicate the lacustrine period within the Melas basin lasted at least centuries to millennia, and included at least two highstands with an intervening lowstand or hiatus. Climate conditions conducive to lake stability had to be maintained for a duration long enough to build these fans. Localized aqueous alteration of the surface occurred after the lacustrine period, resulting in multiple hydrated silica (opal) outcrops within the basin. Figure 1: Study region and sketch map

  2. Membrane-Active Sequences within gp41 Membrane Proximal External Region (MPER) Modulate MPER-Containing Peptidyl Fusion Inhibitor Activity and the Biosynthesis of HIV-1 Structural Proteins

    PubMed Central

    Zhang, Si Min; Jejcic, Alenka; Tam, James P.; Vahlne, Anders

    2015-01-01

    The membrane proximal external region (MPER) is a highly conserved membrane-active region located at the juxtamembrane positions within class I viral fusion glycoproteins and essential for membrane fusion events during viral entry. The MPER in the human immunodeficiency virus type I (HIV-1) envelope protein (Env) interacts with the lipid bilayers through a cluster of tryptophan (Trp) residues and a C-terminal cholesterol-interacting motif. The inclusion of the MPER N-terminal sequence contributes to the membrane reactivity and anti-viral efficacy of the first two anti-HIV peptidyl fusion inhibitors T20 and T1249. As a type I transmembrane protein, Env also interacts with the cellular membranes during its biosynthesis and trafficking. Here we investigated the roles of MPER membrane-active sequences during both viral entry and assembly, specifically, their roles in the design of peptidyl fusion inhibitors and the biosynthesis of viral structural proteins. We found that elimination of the membrane-active elements in MPER peptides, namely, penta Trp→alanine (Ala) substitutions and the disruption of the C-terminal cholesterol-interacting motif through deletion inhibited the anti-viral effect against the pseudotyped HIV-1. Furthermore, as compared to C-terminal dimerization, N-terminal dimerization of MPER peptides and N-terminal extension with five helix-forming residues enhanced their anti-viral efficacy substantially. The secondary structure study revealed that the penta-Trp→Ala substitutions also increased the helical content in the MPER sequence, which prompted us to study the biological relevance of such mutations in pre-fusion Env. We observed that Ala mutations of Trp664, Trp668 and Trp670 in MPER moderately lowered the intracellular and intraviral contents of Env while significantly elevating the content of another viral structural protein, p55/Gag and its derivative p24/capsid. The data suggest a role of the gp41 MPER in the membrane-reactive events during

  3. Comparison of Muscle Onset Activation Sequences between a Golf or Tennis Swing and Common Training Exercises Using Surface Electromyography: A Pilot Study.

    PubMed

    Vasudevan, John M; Logan, Andrew; Shultz, Rebecca; Koval, Jeffrey J; Roh, Eugene Y; Fredericson, Michael

    2016-01-01

    Aim. The purpose of this pilot study is to use surface electromyography to determine an individual athlete's typical muscle onset activation sequence when performing a golf or tennis forward swing and to use the method to assess to what degree the sequence is reproduced with common conditioning exercises and a machine designed for this purpose. Methods. Data for 18 healthy male subjects were collected for 15 muscles of the trunk and lower extremities. Data were filtered and processed to determine the average onset of muscle activation for each motion. A Spearman correlation estimated congruence of activation order between the swing and each exercise. Correlations of each group were pooled with 95% confidence intervals using a random effects meta-analytic strategy. Results. The averaged sequences differed among each athlete tested, but pooled correlations demonstrated a positive association between each exercise and the participants' natural muscle onset activation sequence. Conclusion. The selected training exercises and Turning Point™ device all partially reproduced our athletes' averaged muscle onset activation sequences for both sports. The results support consideration of a larger, adequately powered study using this method to quantify to what degree each of the selected exercises is appropriate for use in both golf and tennis. PMID:27403454

  4. Comparison of Muscle Onset Activation Sequences between a Golf or Tennis Swing and Common Training Exercises Using Surface Electromyography: A Pilot Study

    PubMed Central

    Shultz, Rebecca; Fredericson, Michael

    2016-01-01

    Aim. The purpose of this pilot study is to use surface electromyography to determine an individual athlete's typical muscle onset activation sequence when performing a golf or tennis forward swing and to use the method to assess to what degree the sequence is reproduced with common conditioning exercises and a machine designed for this purpose. Methods. Data for 18 healthy male subjects were collected for 15 muscles of the trunk and lower extremities. Data were filtered and processed to determine the average onset of muscle activation for each motion. A Spearman correlation estimated congruence of activation order between the swing and each exercise. Correlations of each group were pooled with 95% confidence intervals using a random effects meta-analytic strategy. Results. The averaged sequences differed among each athlete tested, but pooled correlations demonstrated a positive association between each exercise and the participants' natural muscle onset activation sequence. Conclusion. The selected training exercises and Turning Point™ device all partially reproduced our athletes' averaged muscle onset activation sequences for both sports. The results support consideration of a larger, adequately powered study using this method to quantify to what degree each of the selected exercises is appropriate for use in both golf and tennis. PMID:27403454

  5. C2 Link Security for UAS: Technical Literature Study and Preliminary Functional Requirements. Version 0.9 (Working Draft)

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This document provides a study of the technical literature related to Command and Control (C2) link security for Unmanned Aircraft Systems (UAS) for operation in the National Airspace System (NAS). Included is a preliminary set of functional requirements for C2 link security.

  6. PTS-Mediated Regulation of the Transcription Activator MtlR from Different Species: Surprising Differences despite Strong Sequence Conservation.

    PubMed

    Joyet, Philippe; Derkaoui, Meriem; Bouraoui, Houda; Deutscher, Josef

    2015-01-01

    The hexitol D-mannitol is transported by many bacteria via a phosphoenolpyruvate (PEP):carbohydrate phosphotransferase system (PTS). In most Firmicutes, the transcription activator MtlR controls the expression of the genes encoding the D-mannitol-specific PTS components and D-mannitol-1-P dehydrogenase. MtlR contains an N-terminal helix-turn-helix motif followed by an Mga-like domain, two PTS regulation domains (PRDs), an EIIB(Gat)- and an EIIA(Mtl)-like domain. The four regulatory domains are the target of phosphorylation by PTS components. Despite strong sequence conservation, the mechanisms controlling the activity of MtlR from Lactobacillus casei, Bacillus subtilis and Geobacillus stearothermophilus are quite different. Owing to the presence of a tyrosine in place of the second conserved histidine (His) in PRD2, L. casei MtlR is not phosphorylated by Enzyme I (EI) and HPr. When the corresponding His in PRD2 of MtlR from B. subtilis and G. stearothermophilus was replaced with alanine, the transcription regulator was no longer phosphorylated and remained inactive. Surprisingly, L. casei MtlR functions without phosphorylation in PRD2 because in a ptsI (EI) mutant MtlR is constitutively active. EI inactivation prevents not only phosphorylation of HPr, but also of the PTS(Mtl) components, which inactivate MtlR by phosphorylating its EIIB(Gat)- or EIIA(Mtl)-like domain. This explains the constitutive phenotype of the ptsI mutant. The absence of EIIB(Mtl)-mediated phosphorylation leads to induction of the L. caseimtl operon. This mechanism resembles mtlARFD induction in G. stearothermophilus, but differs from EIIA(Mtl)-mediated induction in B. subtilis. In contrast to B. subtilis MtlR, L. casei MtlR activation does not require sequestration to the membrane via the unphosphorylated EIIB(Mtl) domain. PMID:26159071

  7. Landfill leachate treatment using powdered activated carbon augmented sequencing batch reactor (SBR) process: optimization by response surface methodology.

    PubMed

    Aziz, Shuokr Qarani; Aziz, Hamidi Abdul; Yusoff, Mohd Suffian; Bashir, Mohammed J K

    2011-05-15

    In this study, landfill leachate was treated by using the sequencing batch reactor (SBR) process. Two types of the SBR, namely non-powdered activated carbon and powdered activated carbon (PAC-SBR) were used. The influence of aeration rate and contact time on SBR and PAC-SBR performances was investigated. Removal efficiencies of chemical oxygen demand (COD), colour, ammoniacal nitrogen (NH(3)-N), total dissolved salts (TDS), and sludge volume index (SVI) were monitored throughout the experiments. Response surface methodology (RSM) was applied for experimental design, analysis and optimization. Based on the results, the PAC-SBR displayed superior performance in term of removal efficiencies when compared to SBR. At the optimum conditions of aeration rate of 1L/min and contact time of 5.5h the PAC-SBR achieved 64.1%, 71.2%, 81.4%, and 1.33% removal of COD, colour, NH(3)-N, and TDS, respectively. The SVI value of PAC-SBR was 122.2 mL/g at optimum conditions. PMID:21420786

  8. UAS Conflict-Avoidance Using Multiagent RL with Abstract Strategy Type Communication

    NASA Technical Reports Server (NTRS)

    Rebhuhn, Carrie; Knudson, Matt; Tumer, Kagan

    2014-01-01

    The use of unmanned aerial systems (UAS) in the national airspace is of growing interest to the research community. Safety and scalability of control algorithms are key to the successful integration of autonomous system into a human-populated airspace. In order to ensure safety while still maintaining efficient paths of travel, these algorithms must also accommodate heterogeneity of path strategies of its neighbors. We show that, using multiagent RL, we can improve the speed with which conflicts are resolved in cases with up to 80 aircraft within a section of the airspace. In addition, we show that the introduction of abstract agent strategy types to partition the state space is helpful in resolving conflicts, particularly in high congestion.

  9. Measurements of atmospheric aerosol vertical distributions above Svalbard, Norway, using unmanned aerial systems (UAS)

    NASA Astrophysics Data System (ADS)

    Bates, T. S.; Quinn, P. K.; Johnson, J. E.; Corless, A.; Brechtel, F. J.; Stalin, S. E.; Meinig, C.; Burkhart, J. F.

    2013-08-01

    Atmospheric aerosol vertical distributions were measured above Svalbard, Norway, in April 2011 during the Cooperative Investigation of Climate-Cryosphere Interactions campaign (CICCI). Measurements were made of the particle number concentration and the aerosol light absorption coefficient at three wavelengths. A filter sample was collected on each flight at the altitude of maximum particle number concentration. The filters were analyzed for major anions and cations. The aerosol payload was flown in a NOAA/PMEL MANTA Unmanned Aerial System (UAS). A total of 18 flights were flown during the campaign totaling 38 flight hours. The data show frequent aerosol layers aloft with high particle number concentration (1000 cm-3) and enhanced aerosol light absorption (1 Mm-1). Air mass histories of these aerosol layers were assessed using FLEXPART particle dispersion modeling. The data contribute to an assessment of sources of BC to the Arctic and potential climate impacts.

  10. Measurements of atmospheric aerosol vertical distributions above Svalbard, Norway using unmanned aerial systems (UAS)

    NASA Astrophysics Data System (ADS)

    Bates, T. S.; Quinn, P. K.; Johnson, J. E.; Corless, A.; Brechtel, F. J.; Stalin, S. E.; Meinig, C.; Burkhart, J. F.

    2013-03-01

    Atmospheric aerosol vertical distributions were measured above Svalbard, Norway in April 2011 during the Cooperative Investigation of Climate-Cryosphere Interactions campaign (CICCI). Measurements were made of the particle number concentration and the aerosol light absorption coefficient at three wavelengths. A filter sample was collected on each flight at the altitude of maximum particle number concentration. The filters were analyzed for major anions and cations. The aerosol payload was flown in a NOAA/PMEL MANTA Unmanned Aerial System (UAS). A total of 18 flights were flown during the campaign totaling 38 flight hours. The data show frequent aerosol layers aloft with high particle number concentration (1000 cm-3 and enhanced aerosol light absorption (1 Mm-1). Air mass histories of these aerosol layers were assessed using FLEXPART particle dispersion modeling. The data contribute to an assessment of sources of BC to the Arctic and potential climate impacts.

  11. Emergency Response Fire-Imaging UAS Missions over the Southern California Wildfire Disaster

    NASA Technical Reports Server (NTRS)

    DelFrate, John H.

    2008-01-01

    Objectives include: Demonstrate capabilities of UAS to overfly and collect sensor data on widespread fires throughout Western US. Demonstrate long-endurance mission capabilities (20-hours+). Image multiple fires (greater than 4 fires per mission), to showcase extendable mission configuration and ability to either linger over key fires or station over disparate regional fires. Demonstrate new UAV-compatible, autonomous sensor for improved thermal characterization of fires. Provide automated, on-board, terrain and geo-rectified sensor imagery over OTH satcom links to national fire personnel and Incident commanders. Deliver real-time imagery (within 10-minutes of acquisition). Demonstrate capabilities of OTS technologies (GoogleEarth) to serve and display mission-critical sensor data, coincident with other pertinent data elements to facilitate information processing (WX data, ground asset data, other satellite data, R/T video, flight track info, etc).

  12. Emergency Response Fire-Imaging UAS Missions over the Southern California Wildfire Disaster

    NASA Technical Reports Server (NTRS)

    Cobleigh, Brent R.

    2007-01-01

    Objectives include: Demonstrate capabilities of UAS to overfly and collect sensor data on widespread fires throughout Western US. Demonstrate long-endurance mission capabilities (20-hours+). Image multiple fires (greater than 4 fires per mission), to showcase extendable mission configuration and ability to either linger over key fires or station over disparate regional fires. Demonstrate new UAV-compatible, autonomous sensor for improved thermal characterization of fires. Provide automated, on-board, terrain and geo-rectified sensor imagery over OTH satcom links to national fire personnel and Incident commanders. Deliver real-time imagery (within 10-minutes of acquisition). Demonstrate capabilities of OTS technologies (GoogleEarth) to serve and display mission-critical sensor data, coincident with other pertinent data elements to facilitate information processing (WX data, ground asset data, other satellite data, R/T video, flight track info, etc).

  13. Structural investigation of an extracellular polysaccharide produced by the cariogenic bacterium Streptococcus mutans strain UA159.

    PubMed

    Li, Bo; Dobruchowska, Justyna M; Hoogenkamp, Michel A; Gerwig, Gerrit J

    2012-09-01

    The structure of an extracellular polysaccharide EPS159 produced from sucrose by Streptococcus mutans UA159 was investigated through the main oligosaccharides obtained from partial acid hydrolysis, monosaccharide/methylation analysis, and 1D/2D (1)H NMR spectroscopy. The results showed that EPS159 contained terminal, 3-substituted, 6-substituted, and 3,6-disubstituted α-D-glucopyranose residues in a molar percentage of 14, 18, 54, and 14%. The backbone of EPS159 was composed of →6)Glcp(1→ residues, and about 20% of the →6)Glcp(1→ residues was substituted at 3-OH by →3)Glcp(1→ and/or Glcp(1→ residues to form side chains. A composite model of EPS159, that includes all identified structural features, was formulated: [Formula, see text:]. PMID:24751092

  14. Calculated in situ rock density from gravity observations, UA-1 (Cannikin) emplacement hole, Amchitka Island, Alaska

    USGS Publications Warehouse

    Healey, D.L.

    1971-01-01

    Gravity observations were made on the ground surface and at a depth of 5,854 feet in drill hole UA-1. Two attempts to measure the free-air gradient utilizing the headframe over the drill hole were unsuccessful owing to mechanical vibrations in the structure. Because of the uncertainty in the measured free-air gradients these values were discarded and the average value (0.09406 mgal/ft) was used in the calculations. The calculated in situ bulk density is 2.36 g/cc. The weighted average bulk density determined from 47 core samples taken in the adjacent UAE-1 drill hole is also 2.36 g/cc. An analysis of selected portions of density logs provides an in situ bulk density of 2.37 g/cc.

  15. Security Risk Assessment Process for UAS in the NAS CNPC Architecture

    NASA Technical Reports Server (NTRS)

    Iannicca, Dennis Christopher; Young, Daniel Paul; Suresh, Thadhani; Winter, Gilbert A.

    2013-01-01

    This informational paper discusses the risk assessment process conducted to analyze Control and Non-Payload Communications (CNPC) architectures for integrating civil Unmanned Aircraft Systems (UAS) into the National Airspace System (NAS). The assessment employs the National Institute of Standards and Technology (NIST) Risk Management framework to identify threats, vulnerabilities, and risks to these architectures and recommends corresponding mitigating security controls. This process builds upon earlier work performed by RTCA Special Committee (SC) 203 and the Federal Aviation Administration (FAA) to roadmap the risk assessment methodology and to identify categories of information security risks that pose a significant impact to aeronautical communications systems. A description of the deviations from the typical process is described in regards to this aeronautical communications system. Due to the sensitive nature of the information, data resulting from the risk assessment pertaining to threats, vulnerabilities, and risks is beyond the scope of this paper

  16. Security Risk Assessment Process for UAS in the NAS CNPC Architecture

    NASA Technical Reports Server (NTRS)

    Iannicca, Dennis C.; Young, Dennis P.; Thadani, Suresh K.; Winter, Gilbert A.

    2013-01-01

    This informational paper discusses the risk assessment process conducted to analyze Control and Non-Payload Communications (CNPC) architectures for integrating civil Unmanned Aircraft Systems (UAS) into the National Airspace System (NAS). The assessment employs the National Institute of Standards and Technology (NIST) Risk Management framework to identify threats, vulnerabilities, and risks to these architectures and recommends corresponding mitigating security controls. This process builds upon earlier work performed by RTCA Special Committee (SC) 203 and the Federal Aviation Administration (FAA) to roadmap the risk assessment methodology and to identify categories of information security risks that pose a significant impact to aeronautical communications systems. A description of the deviations from the typical process is described in regards to this aeronautical communications system. Due to the sensitive nature of the information, data resulting from the risk assessment pertaining to threats, vulnerabilities, and risks is beyond the scope of this paper.

  17. UAS Applications for Hurricane Science, Hurrican and Severe Storm Sentinel (HS3)

    NASA Technical Reports Server (NTRS)

    Braun, Scott

    2014-01-01

    Earth Science Industry Update: UAS Applications for Hurricane Science Unmanned systems can significantly transform hurricane observations and monitoring, improving our knowledge about and ability to forecast storm formation, track, and intensity change. NASA's use of the Global Hawk has demonstrated the scientific value of this platform and provided a proof-of-concept for operational applications. However, science flight operations face several challenges and constraints. In this session, learn about how NASA adapted the Global Hawk to do science; How NASA conducts its hurricane missions, and some of the challenges and constraints they face; Science results from NASA's recent hurricane field campaigns using the Global Hawk. How assimilation of dropsonde and radar data into weather prediction models may improve forecast accuracy; Other Earth science problems that could be addressed with Global Hawks.

  18. New insights into fault activation and stress transfer between en echelon thrusts: The 2012 Emilia, Northern Italy, earthquake sequence

    NASA Astrophysics Data System (ADS)

    Cheloni, D.; Giuliani, R.; D'Agostino, N.; Mattone, M.; Bonano, M.; Fornaro, G.; Lanari, R.; Reale, D.; Atzori, S.

    2016-06-01

    Here we present the results of the inversion of a new geodetic data set covering the 2012 Emilia seismic sequence and the following 1 year of postseismic deformation. Modeling of the geodetic data together with the use of a catalog of 3-D relocated aftershocks allows us to constrain the rupture geometries and the coseismic and postseismic slip distributions for the two main events (Mw 6.1 and 6.0) of the sequence and to explore how these thrust events have interacted with each other. Dislocation modeling reveals that the first event ruptured a slip patch located in the center of the Middle Ferrara thrust with up to 1 m of reverse slip. The modeling of the second event, located about 15 km to the southwest, indicates a main patch with up to 60 cm of slip initiated in the deeper and flatter portion of the Mirandola thrust and progressively propagated postseismically toward the top section of the rupture plane, where most of the aftershocks and afterslip occurred. Our results also indicate that between the two main events, a third thrust segment was activated releasing a pulse of aseismic slip equivalent to a Mw 5.8 event. Coulomb stress changes suggest that the aseismic event was likely triggered by the preceding main shock and that the aseismic slip event probably brought the second fault closer to failure. Our findings show significant correlations between static stress changes and seismicity and suggest that stress interaction between earthquakes plays a significant role among continental en echelon thrusts.

  19. FROM THE BLAZAR SEQUENCE TO THE BLAZAR ENVELOPE: REVISITING THE RELATIVISTIC JET DICHOTOMY IN RADIO-LOUD ACTIVE GALACTIC NUCLEI

    SciTech Connect

    Meyer, Eileen T.; Fossati, Giovanni; Georganopoulos, Markos; Lister, Matthew L.

    2011-10-20

    We revisit the concept of a blazar sequence that relates the synchrotron peak frequency ({nu}{sub peak}) in blazars with synchrotron peak luminosity (L{sub peak}, in {nu}L{sub {nu}}) using a large sample of radio-loud active galactic nuclei. We present observational evidence that the blazar sequence is formed from two populations in the synchrotron {nu}{sub peak}-L{sub peak} plane, each forming an upper edge to an envelope of progressively misaligned blazars, and connecting to an adjacent group of radio galaxies having jets viewed at much larger angles to the line of sight. When binned by jet kinetic power (L{sub kin}; as measured through a scaling relationship with extended radio power), we find that radio core dominance decreases with decreasing synchrotron L{sub peak}, revealing that sources in the envelope are generally more misaligned. We find population-based evidence of velocity gradients in jets at low kinetic powers ({approx}10{sup 42}-10{sup 44.5} erg s{sup -1}), corresponding to Fanaroff-Riley (FR) I radio galaxies and most BL Lac objects. These low jet power 'weak-jet' sources, thought to exhibit radiatively inefficient accretion, are distinguished from the population of non-decelerating, low synchrotron-peaking (LSP) blazars and FR II radio galaxies ('strong' jets) which are thought to exhibit radiatively efficient accretion. The two-population interpretation explains the apparent contradiction of the existence of highly core-dominated, low-power blazars at both low and high synchrotron peak frequencies, and further implies that most intermediate synchrotron peak sources are not intermediate in intrinsic jet power between LSP and high synchrotron-peaking (HSP) sources, but are more misaligned versions of HSP sources with similar jet powers.

  20. Evaluating auditory stream segregation of SAM tone sequences by subjective and objective psychoacoustical tasks, and brain activity

    PubMed Central

    Dolležal, Lena-Vanessa; Brechmann, André; Klump, Georg M.; Deike, Susann

    2014-01-01

    Auditory stream segregation refers to a segregated percept of signal streams with different acoustic features. Different approaches have been pursued in studies of stream segregation. In psychoacoustics, stream segregation has mostly been investigated with a subjective task asking the subjects to report their percept. Few studies have applied an objective task in which stream segregation is evaluated indirectly by determining thresholds for a percept that depends on whether auditory streams are segregated or not. Furthermore, both perceptual measures and physiological measures of brain activity have been employed but only little is known about their relation. How the results from different tasks and measures are related is evaluated in the present study using examples relying on the ABA- stimulation paradigm that apply the same stimuli. We presented A and B signals that were sinusoidally amplitude modulated (SAM) tones providing purely temporal, spectral or both types of cues to evaluate perceptual stream segregation and its physiological correlate. Which types of cues are most prominent was determined by the choice of carrier and modulation frequencies (fmod) of the signals. In the subjective task subjects reported their percept and in the objective task we measured their sensitivity for detecting time-shifts of B signals in an ABA- sequence. As a further measure of processes underlying stream segregation we employed functional magnetic resonance imaging (fMRI). SAM tone parameters were chosen to evoke an integrated (1-stream), a segregated (2-stream), or an ambiguous percept by adjusting the fmod difference between A and B tones (Δfmod). The results of both psychoacoustical tasks are significantly correlated. BOLD responses in fMRI depend on Δfmod between A and B SAM tones. The effect of Δfmod, however, differs between auditory cortex and frontal regions suggesting differences in representation related to the degree of perceptual ambiguity of the sequences

  1. Wimuas: Developing a Tool to Review Wildlife Data from Various Uas Flight Plans

    NASA Astrophysics Data System (ADS)

    Linchant, J.; Lhoest, S.; Quevauvillers, S.; Semeki, J.; Lejeune, P.; Vermeulen, C.

    2015-08-01

    To get around UAS limitations and propose a viable solution for wildlife monitoring, the development of new inventory methods is needed. However, most authors use the classic systematic transect method as data processing and statistics are easier. We thus created an application to process data from every type of flight plan and to help detect and compare observations on large datasets. WiMUAS is a small software compatible with the open-source QGISthat allows the creation of visual maps compatible with geographical information systems based on telemetry data and payload parameters to estimate the covered area. The application also has a slider for animal detection that allows multiple observers to record and compare their results for accurate counts. We then tested it on data from a trial realized on savannah animal populations in Democratic Republic of Congo using the Falcon UAS. We created a new type of flight plan, a rosette-shaped design that can be covered in three flights,.and repeated it twice. More than 5000 images were collected during the six flights. Image projection gives an area of 12,4 km2 for the first trial and of 12,1 km2 for the second. The mean sampling rate for both test is 6,1 %. Observers spotted buffaloes, hippos, warthogs and various antelopes with different success over an average rate of 8 images reviewed per minute. Resulting densities observed by the three observers are similar for each test (coefficient of variation 6,9 and 8,6 % respectively) but mean densities vary a lot between the two trials (23,8 and 6,5 animals/km2 respectively).

  2. New Satellite Project Aerosol-UA: Remote Sensing of Aerosols in the Terrestrial Atmosphere

    NASA Technical Reports Server (NTRS)

    Milinevsky, G.; Yatskiv, Ya.; Degtyaryov, O.; Syniavskyi, I.; Mishchenko, Michael I.; Rosenbush, V.; Ivanov, Yu.; Makarov, A.; Bovchaliuk, A.; Danylevsky, V.; Sosonkin, M.; Moskalov, S.; Bovchaliuk, V; Lukenyuk, A.; Shymkiv, A.

    2016-01-01

    We discuss the development of the Ukrainian space project Aerosol-UA which has the following three main objectives: (1) to monitor the spatial distribution of key characteristics of terrestrial tropospheric and stratospheric aerosols; (2) to provide a comprehensive observational database enabling accurate quantitative estimates of the aerosol contribution to the energy budget of the climate system; and (3) quantify the contribution of anthropogenic aerosols to climate and ecological processes. The remote sensing concept of the project is based on precise orbital measurements of the intensity and polarization of sunlight scattered by the atmosphere and the surface with a scanning polarimeter accompanied by a wide-angle multispectral imager-polarimeter. Preparations have already been made for the development of the instrument suite for the Aerosol-UA project, in particular, of the multi-channel scanning polarimeter (ScanPol) designed for remote sensing studies of the global distribution of aerosol and cloud properties (such as particle size, morphology, and composition) in the terrestrial atmosphere by polarimetric and spectrophotometric measurements of the scattered sunlight in a wide range of wavelengths and viewing directions from which a scene location is observed. ScanPol is accompanied by multispectral wide-angle imager-polarimeter (MSIP) that serves to collect information on cloud conditions and Earths surface image. Various components of the polarimeter ScanPol have been prototyped, including the opto-mechanical and electronic assemblies and the scanning mirror controller. Preliminary synthetic data simulations for the retrieval of aerosol parameters over land surfaces have been performed using the Generalized Retrieval of Aerosol and Surface Properties (GRASP) algorithm. Methods for the validation of satellite data using ground-based observations of aerosol properties are also discussed. We assume that designing, building, and launching into orbit a multi

  3. Meta-image navigation augmenters for GPS denied mountain navigation of small UAS

    NASA Astrophysics Data System (ADS)

    Wang, Teng; ćelik, Koray; Somani, Arun K.

    2014-06-01

    We present a novel approach to use mountain drainage patterns for GPS-Denied navigation of small unmanned aerial systems (UAS) such as the ScanEagle, utilizing a down-looking fixed focus monocular imager. Our proposal allows extension of missions to GPS-denied mountain areas, with no assumption of human-made geographic objects. We leverage the analogy between mountain drainage patterns, human arteriograms, and human fingerprints, to match local drainage patterns to Graphics Processing Unit (GPU) rendered parallax occlusion maps of geo-registered radar returns (GRRR). Details of our actual GPU algorithm is beyond the subject of this paper, and is planned as a future paper. The matching occurs in real-time, while GRRR data is loaded on-board the aircraft pre-mission, so as not to require a scanning aperture radar during the mission. For recognition purposes, we represent a given mountain area with a set of spatially distributed mountain minutiae, i.e., details found in the drainage patterns, so that conventional minutiae-based fingerprint matching approaches can be used to match real-time camera image against template images in the training set. We use medical arteriography processing techniques to extract the patterns. The minutiae-based representation of mountains is achieved by first exposing mountain ridges and valleys with a series of filters and then extracting mountain minutiae from these ridges/valleys. Our results are experimentally validated on actual terrain data and show the effectiveness of minutiae-based mountain representation method. Furthermore, we study how to select landmarks for UAS navigation based on the proposed mountain representation and give a set of examples to show its feasibility. This research was in part funded by Rockwell Collins Inc.

  4. Quantifying fluvial topography using UAS imagery and SfM photogrammetry

    NASA Astrophysics Data System (ADS)

    Woodget, Amy; Carbonneau, Patrice; Visser, Fleur; Maddock, Ian; Habit, Evelyn

    2014-05-01

    The measurement and monitoring of fluvial topography at high spatial and temporal resolutions is in increasing demand for a range of river science and management applications, including change detection, hydraulic models, habitat assessments, river restorations and sediment budgets. Existing approaches are yet to provide a single technique for rapidly quantifying fluvial topography in both exposed and submerged areas, with high spatial resolution, reach-scale continuous coverage, high accuracy and reasonable cost. In this paper, we explore the potential of using imagery acquired from a small unmanned aerial system (UAS) and processed using Structure-from-Motion (SfM) photogrammetry for filling this gap. We use a rotary winged hexacopter known as the Draganflyer X6, a consumer grade digital camera (Panasonic Lumix DMC-LX3) and the commercially available PhotoScan Pro SfM software (Agisoft LLC). We test the approach on three contrasting river systems; a shallow margin of the San Pedro River in the Valdivia region of south-central Chile, the lowland River Arrow in Warwickshire, UK, and the upland Coledale Beck in Cumbria, UK. Digital elevation models (DEMs) and orthophotos of hyperspatial resolution (0.01-0.02m) are produced. Mean elevation errors are found to vary somewhat between sites, dependent on vegetation coverage and the spatial arrangement of ground control points (GCPs) used to georeference the data. Mean errors are in the range 4-44mm for exposed areas and 17-89mm for submerged areas. Errors in submerged areas can be improved to 4-56mm with the application of a simple refraction correction procedure. Multiple surveys of the River Arrow site show consistently high quality results, indicating the repeatability of the approach. This work therefore demonstrates the potential of a UAS-SfM approach for quantifying fluvial topography.

  5. New satellite project Aerosol-UA: Remote sensing of aerosols in the terrestrial atmosphere

    NASA Astrophysics Data System (ADS)

    Milinevsky, G.; Yatskiv, Ya.; Degtyaryov, O.; Syniavskyi, I.; Mishchenko, M.; Rosenbush, V.; Ivanov, Yu.; Makarov, A.; Bovchaliuk, A.; Danylevsky, V.; Sosonkin, M.; Moskalov, S.; Bovchaliuk, V.; Lukenyuk, A.; Shymkiv, A.; Udodov, E.

    2016-06-01

    We discuss the development of the Ukrainian space project Aerosol-UA which has the following three main objectives: (1) to monitor the spatial distribution of key characteristics of terrestrial tropospheric and stratospheric aerosols; (2) to provide a comprehensive observational database enabling accurate quantitative estimates of the aerosol contribution to the energy budget of the climate system; and (3) quantify the contribution of anthropogenic aerosols to climate and ecological processes. The remote sensing concept of the project is based on precise orbital measurements of the intensity and polarization of sunlight scattered by the atmosphere and the surface with a scanning polarimeter accompanied by a wide-angle multispectral imager-polarimeter. Preparations have already been made for the development of the instrument suite for the Aerosol-UA project, in particular, of the multi-channel scanning polarimeter (ScanPol) designed for remote sensing studies of the global distribution of aerosol and cloud properties (such as particle size, morphology, and composition) in the terrestrial atmosphere by polarimetric and spectrophotometric measurements of the scattered sunlight in a wide range of wavelengths and viewing directions from which a scene location is observed. ScanPol is accompanied by multispectral wide-angle imager-polarimeter (MSIP) that serves to collect information on cloud conditions and Earth's surface image. Various components of the polarimeter ScanPol have been prototyped, including the opto-mechanical and electronic assemblies and the scanning mirror controller. Preliminary synthetic data simulations for the retrieval of aerosol parameters over land surfaces have been performed using the Generalized Retrieval of Aerosol and Surface Properties (GRASP) algorithm. Methods for the validation of satellite data using ground-based observations of aerosol properties are also discussed. We assume that designing, building, and launching into orbit a multi

  6. Quantifying the Representation Error of Land Biosphere Models using High Resolution Footprint Analyses and UAS Observations

    NASA Astrophysics Data System (ADS)

    Hanson, C. V.; Schmidt, A.; Law, B. E.; Moore, W.

    2015-12-01

    The validity of land biosphere model outputs rely on accurate representations of ecosystem processes within the model. Typically, a vegetation or land cover type for a given area (several Km squared or larger resolution), is assumed to have uniform properties. The limited spacial and temporal resolution of models prevents resolving finer scale heterogeneous flux patterns that arise from variations in vegetation. This representation error must be quantified carefully if models are informed through data assimilation in order to assign appropriate weighting of model outputs and measurement data. The representation error is usually only estimated or ignored entirely due to the difficulty in determining reasonable values. UAS based gas sensors allow measurements of atmospheric CO2 concentrations with unprecedented spacial resolution, providing a means of determining the representation error for CO2 fluxes empirically. In this study we use three dimensional CO2 concentration data in combination with high resolution footprint analyses in order to quantify the representation error for modelled CO2 fluxes for typical resolutions of regional land biosphere models. CO2 concentration data were collected using an Atlatl X6A hexa-copter, carrying a highly calibrated closed path infra-red gas analyzer based sampling system with an uncertainty of ≤ ±0.2 ppm CO2. Gas concentration data was mapped in three dimensions using the UAS on-board position data and compared to footprints generated using WRF 3.61. Chad Hanson, Oregon State University, Corvallis, OR Andres Schmidt, Oregon State University, Corvallis, OR Bev Law, Oregon State University, Corvallis, OR

  7. The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences.

    PubMed

    Donnelly, M L; Hughes, L E; Luke, G; Mendoza, H; ten Dam, E; Gani, D; Ryan, M D

    2001-05-01

    The 2A/2B cleavage of aphtho- and cardiovirus 2A polyproteins is mediated by their 2A proteins 'cleaving' at their own C termini. We have analysed this activity using artificial reporter polyprotein systems comprising green fluorescent protein (GFP) linked via foot-and-mouth disease virus (FMDV) 2A to beta-glucuronidase (GUS) -- forming a single, long, open reading frame. Analysis of the distribution of radiolabel showed a high proportion of the in vitro translation products (approximately 90%) were in the form of the 'cleavage' products GUS and [GFP2A]. Alternative models have been proposed to account for the 'cleavage' activity: proteolysis by a host-cell proteinase, autoproteolysis or a translational effect. To investigate the mechanism of this cleavage event constructs encoding site-directed mutant and naturally occurring '2A-like' sequences were used to program in vitro translation systems and the gel profiles analysed. Analysis of site-directed mutant 2A sequences showed that 'cleavage' occurred in constructs in which all the candidate nucleophilic residues were substituted -- with the exception of aspartate-12. This residue is not, however, conserved amongst all functional '2A-like' sequences. '2A-like' sequences were identified within insect virus polyproteins, the NS34 protein of type C rotaviruses, repeated sequences in Trypanosoma spp. and a eubacterial alpha-glucosiduronasesequence(Thermatoga maritima aguA). All of the 2A-like sequences analysed were active (to various extents), other than the eubacterial alpha-glucosiduronase 2A-like sequence. This method of control of protein biogenesis may well not, therefore, be confined to members of the PICORNAVIRIDAE: Taken together, these data provide additional evidence that neither FMDV 2A nor '2A-like' sequences are autoproteolytic elements. PMID:11297677

  8. Nucleotide sequence of the plasminogen activator gene of Yersinia pestis: relationship to ompT of Escherichia coli and gene E of Salmonella typhimurium.

    PubMed

    Sodeinde, O A; Goguen, J D

    1989-05-01

    We have determined the nucleotide sequence of the 1.4-kilobase DNA fragment containing the plasminogen activator gene (pla) of Yersinia pestis, which determines both plasminogen activator and coagulase activities of the species. The sequence revealed the presence of a 936-base-pair open reading frame that constitutes the pla gene. This reading frame encodes a 312-amino-acid protein of 34.6 kilodaltons and containing a putative 20-amino-acid signal sequence. The presence of a single large open reading frame is consistent with our previous conclusion that the two Pla proteins which appear in the outer membrane of pla+ Y. pestis are derived from a common precursor. The deduced amino acid sequence of Pla revealed that it possesses a high degree of homology to the products of gene E of Salmonella typhimurium and ompT of Escherichia coli but does not possess significant homology to other plasminogen activators of known sequence. We also identified a transcription unit that resides on the complimentary strand and overlaps the pla gene. PMID:2651310

  9. Differences between neonates and adults in tissue-type-plasminogen activator (t-PA)-catalyzed plasminogen activation with various effectors and in carbohydrate sequences of fibrinogen chains.

    PubMed

    Ries, M; Easton, R L; Longstaff, C; Zenker, M; Corran, P H; Morris, H R; Dell, A; Gaffney, P J

    2001-08-01

    Our study investigates the effect of fetal and adult soluble fibrin (SF), fetal and adult fibrinogen Aalpha- and gamma-chains, as well as adult CNBr-fibrinogen fragments on tissue-type plasminogen activator (t-PA)-catalyzed plasminogen activation of both fetal and adult Glu-plasminogen types 1 and 2. In addition, we determined carbohydrate sequences of fetal and adult Bbeta- and gamma-chains by mass spectrometric analysis. In the absence of an effector, no substantial differences in the rate of plasmin formation could be seen between the fetal and adult plasminogen types. In the presence of an effector, both fetal Glu-plasminogen types revealed lower values for k(cat app) than the respective ad