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Sample records for active root zone

  1. [Impacts of root-zone hypoxia stress on muskmelon growth, its root respiratory metabolism, and antioxidative enzyme activities].

    PubMed

    Liu, Yi-Ling; Li, Tian-Lai; Sun, Zhou-Ping; Chen, Ya-Dong

    2010-06-01

    By using aeroponics culture system, this paper studied the impacts of root-zone hypoxia (10% O2 and 5% O2) stress on the plant growth, root respiratory metabolism, and antioxidative enzyme activities of muskmelon at its fruit development stage. Root-zone hypoxia stress inhibited the plant growth of muskmelon, resulting in the decrease of plant height, root length, and fresh and dry biomass. Comparing with the control (21% O2), hypoxia stress reduced the root respiration rate and malate dehydrogenase (MDH) activity significantly, and the impact of 5% O2 stress was more serious than that of 10% O2 stress. Under hypoxic conditions, the lactate dehydrogenase (LDH), alcohol dehydrogenase (ADH), pyruvate decarboxylase (PDC), superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) activities and the malondialdehyde (MDA) content were significantly higher than the control. The increment of antioxidative enzyme activities under 10% O2 stress was significantly higher than that under 5% O2 stress, while the MDA content was higher under 5% O2 stress than under 10% O2 stress, suggesting that when the root-zone oxygen concentration was below 10%, the aerobic respiration of muskmelon at its fruit development stage was obviously inhibited while the anaerobic respiration was accelerated, and the root antioxidative enzymes induced defense reaction. With the increasing duration of hypoxic stress, the lipid peroxidation would be aggravated, resulting in the damages on muskmelon roots, inhibition of plant growth, and decrease of fruit yield and quality.

  2. Micro 3D ERT tomography for data assimilation modelling of active root zone

    NASA Astrophysics Data System (ADS)

    Vanella, Daniela; Busato, Laura; Boaga, Jacopo; Cassiani, Giorgio; Binley, Andrew; Putti, Mario; Consoli, Simona

    2016-04-01

    Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show

  3. Micro 3D ERT tomography for data assimilation modelling of active root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Busato, L.; Vanella, D.; Consoli, S.; Binley, A. M.

    2015-12-01

    Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show

  4. Circadian Variability in Methane Oxidation Activity in the Root Zone of Rice Plants

    NASA Astrophysics Data System (ADS)

    Schroth, M. H.; Cho, R.; Zeyer, J.

    2009-12-01

    Methane is an important greenhouse gas with a warming potential about 20 times stronger than that of carbon dioxide. A main source of biogenic methane are rice-paddy soils. Methane is produced in flooded rice fields under anaerobic conditions. Conversely, methanotrophic microorganisms oxidize methane to carbon dioxide in the root zone of rice plants in the presence of molecular oxygen supplied to the roots through the plants’ aerenchyma, thus reducing overall methane emissions to the atmosphere. To quantify methane oxidation we adapted push-pull tests (PPTs), a technique originally developed for aquifer testing, in combination with a suitable microbial inhibitor for application in the root zone of rice plants. During a PPT, 70 ml of a test solution containing dissolved substrates (methane, oxygen), nonreactive tracers (argon, chloride) and the methanogenesis inhibitor 2-Bromoethane sulfonate was injected into the plant’s root zone, and after a rest period of two hours extracted from the same location. Reaction rate constants were calculated from extraction-phase breakthrough curves of substrates and tracers. We conducted a set of three different laboratory PPTs to quantify methane oxidation at day time, directly after dawn, and at night in the root zone of four different potted rice plants each. High diurnal methane oxidation rate constants (up to 23 h-1) were obtained for all rice plants. Methane oxidation potential decreased soon after nightfall. At night, rate constants were usually below 1 h-1. Methane oxidation rates were apparently independent of additional oxygen supplied via the injected test solutions, but strongly dependent on photosynthetically produced oxygen transported to the roots through the plants’ aerenchyma. Additional PPTs utilizing 13C-labeled methane are currently being conducted to corroborate these findings. Ultimately, this novel tool shall support efforts to quantitatively understand the controlling mechanisms of methane turnover in

  5. Identification of active root zone by data assimilation techniques: monitoring and modelling of irrigation experiments

    NASA Astrophysics Data System (ADS)

    Busato, Laura; Vanella, Daniela; Boaga, Jacopo; Manoli, Gabriele; Marani, Marco; Putti, Mario; Consoli, Simona; Binley, Andrew M.; Cassiani, Giorgio

    2015-04-01

    The identification of active root distribution and the quantification of relevant water fluxes (root water uptake-RWU) are key elements in understanding the exchanges of mass and energy in soil-plant-atmosphere systems. In this contribution we present the assimilation of 3D time-lapse Electrical Resistivity Tomography (ERT) data, acquired around an orange tree during irrigation experiments, in a soil-plant model that accounts for soil moisture dynamics and root water uptake (RWU), whole plant transpiration, and leaf-level photosynthesis. The model is based on a numerical solution to the 3D Richards equation modified to account for a 3D RWU, trunk xylem, and stomatal conductances. The data assimilation procedure, assisted also by independent information concerning the soil properties, aims specifically at identifying the distribution and strength of active roots modelled as sinks in the unsaturated flow model. In addition the flow model is enhanced by a forward electrical current model in order to predict the electrical response measured by ERT in dependence of the soil water content distribution. Strengths and weaknesses of the proposed approach are discussed.

  6. Regulation of invertase activity in different root zones of wheat (Triticum aestivum L.) seedlings in the course of osmotic adjustment under water deficit conditions.

    PubMed

    Königshofer, Helga; Löppert, Hans-Georg

    2015-07-01

    Osmotic adjustment of roots is an essential adaptive mechanism to sustain water uptake and root growth under water deficit. In this paper, the role of invertases (β-fructofuranosidase, EC 3.2.1.26) in osmotic adjustment was investigated in the root tips (cell division and elongation zone) and the root maturation zone of wheat (Triticum aestivum L. cv. Josef) in the course of osmotic stress imposed by 20% polyethylene glycol (PEG) 6000. The two root zones investigated differed distinctly in the response of invertases to water deprivation. In the root tips, the activity of the vacuolar and cell wall-bound invertases increased markedly under water stress resulting in the accumulation of hexoses (glucose and fructose) that contributed significantly to osmotic adjustment. A transient rise in hydrogen peroxide (H2O2) preceded the enhancement of invertases upon exposure to osmotic stress. Treatment with the NADPH oxidase inhibitor diphenylene iodonium (DPI) abolished the stress induced H2O2 production and suppressed the stimulation of the vacuolar invertase activity, whereas the activity of the cell wall-bound invertase was not influenced by DPI. As a consequence of the inhibitory effect of DPI on the vacuolar invertase, hexose levels and osmotic adjustment were also markedly decreased in the root tips under water deficit in the presence of DPI. These data suggest that H2O2 probably generated by a NADPH oxidase is required as a signalling molecule for the up-regulation of the vacuolar invertase activity in the root tips under osmotic stress, thereby enhancing the capacity for osmotic adjustment. In the root maturation zone, an early H2O2 signal could not be detected in response to PEG application. Only an increase in the glucose level that was not paralleled by fructose and a slight stimulation of the activity of the vacuolar invertase occurred in the maturation zone after water deprivation. The stress induced accumulation of glucose in the maturation zone was not

  7. The Activity of Deep Roots in Bedrock Fractures at the Susquehanna Shale Hills Critical Zone Observatory, USA

    NASA Astrophysics Data System (ADS)

    Hasenmueller, E. A.; Gu, X.; Weitzman, J. N.; Adams, T. S.; Stinchcomb, G. E.; Eissenstat, D. M.; Brantley, S. L.; Kaye, J. P.

    2015-12-01

    Many areas in the world are characterized by shallow soils underlain by weathered bedrock, but root-rock interactions and their implications for regolith weathering are poorly understood. To test the role of tree roots in weathering bedrock, we excavated four pits along a catena in a shale-hosted catchment near the Susquehanna Shale Hills Critical Zone Observatory, USA. We measured a variety of physical and chemical properties including: (1) root density, distribution, and respiration rates, (2) soil gas, and (3) soil, rock, and rock fracture sediment elemental compositions, mineralogy, and morphology. As expected, root density declined rapidly with depth; nevertheless, roots were present in rock fractures even in the deepest, least weathered shale sampled (~ 1.8 m). Root density in the shale fractures was highest at the ridge for all depths and decreased 23-fold downslope as soils thickened and in spite of increasing rock fracture density. Root respiration rates (per gram of root) in fractures were comparable to those in augerable soil, with the highest respiration rates for all depths observed at the ridge. We only observed roots in larger shale fractures (> 50 μm) that were coated with sediment. These sediments were mineralogically and geochemically similar to overlying B and C soil horizons with respect to clay composition, total C and N, and potentially mineralizable C. Such similarities indicate that the sediment coatings are likely the result of translocation of soil particles downward into the fractures. However, concentrations of extractable inorganic N were higher in fracture sediments than in surface soils. Shale in contact with deep roots resembled unweathered parent material geochemically. In the bulk soil, depletion profiles (K, Mg, Si, Fe, and Al) relative to unweathered shale reflected characteristic weathering of illite and chlorite to kaolinite. Approximately 50% of soil K and Mg was lost as eroding particles, supporting the idea that fracture

  8. Enzymatic activities and arbuscular mycorrhizal colonization of Plantago lanceolata and Plantago major in a soil root zone under heavy metal stress.

    PubMed

    Gucwa-Przepióra, Ewa; Nadgórska-Socha, Aleksandra; Fojcik, Barbara; Chmura, Damian

    2016-03-01

    The objectives of the present field study were to examine the soil enzyme activities in the soil root zones of Plantago lanceolata and Plantago major in different heavy metal contaminated stands. Moreover, the investigations concerned the intensity of root endophytic colonization and metal bioaccumulation in roots and shoots. The investigated Plantago species exhibited an excluder strategy, accumulating higher metal content in the roots than in the shoots. The heavy metal accumulation levels found in the two plantain species in this study were comparable to other plants suggested as phytostabilizers; therefore, the selected Plantago species may be applied in the phytostabilization of heavy metal contaminated areas. The lower level of soil enzymes (dehydrogenase, urease, acid, and alkaline phosphatase) as well as the higher bioavailability of metals in the root zone soil of the two plantain species were found in an area affected by smelting activity, where organic matter content in the soil was also the smallest. Mycorrhizal colonization on both species in the contaminated area was similar to colonization in non-contaminated stands. However, the lowest arbuscule occurrence and an absence of dark septate endophytes were found in the area affected by the smelting activity. It corresponded with the lowest plant cover observed in this stand. The assessment of enzyme activity, mycorrhizal colonization, and the chemical and physical properties of soils proved to be sensitive to differences between sites and between Plantago species.

  9. Soil Moisture Active Passive (SMAP) Mission Level 4 Surface and Root Zone Soil Moisture (L4_SM) Product Specification Document

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf H.; Ardizzone, Joseph V.; Kim, Gi-Kong; Lucchesi, Robert A.; Smith, Edmond B.; Weiss, Barry H.

    2015-01-01

    This is the Product Specification Document (PSD) for Level 4 Surface and Root Zone Soil Moisture (L4_SM) data for the Science Data System (SDS) of the Soil Moisture Active Passive (SMAP) project. The L4_SM data product provides estimates of land surface conditions based on the assimilation of SMAP observations into a customized version of the NASA Goddard Earth Observing System, Version 5 (GEOS-5) land data assimilation system (LDAS). This document applies to any standard L4_SM data product generated by the SMAP Project. The Soil Moisture Active Passive (SMAP) mission will enhance the accuracy and the resolution of space-based measurements of terrestrial soil moisture and freeze-thaw state. SMAP data products will have a noteworthy impact on multiple relevant and current Earth Science endeavors. These include: Understanding of the processes that link the terrestrial water, the energy and the carbon cycles, Estimations of global water and energy fluxes over the land surfaces, Quantification of the net carbon flux in boreal landscapes Forecast skill of both weather and climate, Predictions and monitoring of natural disasters including floods, landslides and droughts, and Predictions of agricultural productivity. To provide these data, the SMAP mission will deploy a satellite observatory in a near polar, sun synchronous orbit. The observatory will house an L-band radiometer that operates at 1.40 GHz and an L-band radar that operates at 1.26 GHz. The instruments will share a rotating reflector antenna with a 6 meter aperture that scans over a 1000 km swath.

  10. Expressing Constitutively Active Rheb in Adult Dorsal Root Ganglion Neurons Enhances the Integration of Sensory Axons that Regenerate Across a Chondroitinase-Treated Dorsal Root Entry Zone Following Dorsal Root Crush

    PubMed Central

    Wu, Di; Klaw, Michelle C.; Kholodilov, Nikolai; Burke, Robert E.; Detloff, Megan R.; Côté, Marie-Pascale; Tom, Veronica J.

    2016-01-01

    While the peripheral branch of dorsal root ganglion neurons (DRG) can successfully regenerate after injury, lesioned central branch axons fail to regrow across the dorsal root entry zone (DREZ), the interface between the dorsal root and the spinal cord. This lack of regeneration is due to the limited regenerative capacity of adult sensory axons and the growth-inhibitory environment at the DREZ, which is similar to that found in the glial scar after a central nervous system (CNS) injury. We hypothesized that transduction of adult DRG neurons using adeno-associated virus (AAV) to express a constitutively-active form of the GTPase Rheb (caRheb) will increase their intrinsic growth potential after a dorsal root crush. Additionally, we posited that if we combined that approach with digestion of upregulated chondroitin sulfate proteoglycans (CSPG) at the DREZ with chondroitinase ABC (ChABC), we would promote regeneration of sensory axons across the DREZ into the spinal cord. We first assessed if this strategy promotes neuritic growth in an in vitro model of the glial scar containing CSPG. ChABC allowed for some regeneration across the once potently inhibitory substrate. Combining ChABC treatment with expression of caRheb in DRG significantly improved this growth. We then determined if this combination strategy also enhanced regeneration through the DREZ after dorsal root crush in adult rats in vivo. After unilaterally crushing C4-T1 dorsal roots, we injected AAV5-caRheb or AAV5-GFP into the ipsilateral C5-C8 DRGs. ChABC or PBS was injected into the ipsilateral dorsal horn at C5-C8 to digest CSPG, for a total of four animal groups (caRheb + ChABC, caRheb + PBS, GFP + ChABC, GFP + PBS). Regeneration was rarely observed in PBS-treated animals, whereas short-distance regrowth across the DREZ was observed in ChABC-treated animals. No difference in axon number or length between the ChABC groups was observed, which may be related to intraganglionic inflammation induced by the

  11. Specialized zones of development in roots

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1995-01-01

    The authors propose using the term "distal elongation zone" (DEZ) rather than "postmitotic isodiametric growth zone" to refer to the group of cells between the apical meristem and the elongation zone in plant roots. Reasons presented for the change are that the proposed DEZ includes many cells that are still dividing, most cells in the region are not isodiametric, and the pattern of cell expansion in this region varies with position in the region. Cells in the DEZ respond to gravistimulation, mechanical impedance, electrotropic stimulation, water stress, and auxin. Differences in gene expression patterns between DEZ cells and cells in the main elongation zone are noted.

  12. Snow-cover dynamics monitored by automatic digital photography at the rooting zone of an active rock glacier in the Hinteres Lantal Cirque, Austria

    NASA Astrophysics Data System (ADS)

    Kellerer-Pirklbauer, Andreas; Rieckh, Matthias; Avian, Michael

    2010-05-01

    Knowledge regarding snow-cover dynamics and climatic conditions in the rooting zone of active rock glaciers is still limited. The number of meteorological stations on the surface of or close to active rock glaciers is increasing. However, areal information on snow-cover distribution and its spatial dynamics caused by different processes on rock glaciers surfaces with a high temporal resolution from such remote alpine areas are mostly difficult to obtain. To face this problem an automatic remote digital camera (RDC) system was proprietary developed. The core parts of the RDC system are a standard hand-held digital camera, a remote control, a water proof casing with a transparent opening, a 12V/25Ah battery and solar panels with a charge controller. Three such devices were constructed and installed at different sites in the Central Alps of Austria. One RDC system is used to monitor the rooting zone of the highly active rock glacier in the Hinteres Langtal Cirque (46°59'N, 12°47'E), Central Schober Mountains, Austria. The 0.15 km² large NW-facing rock glaciers is tongue-shaped with a fast moving lower part (>1m/a) and a substantially slower upper part, ranging in elevation between 2455-2700 m a.s.l. The RDC system was set up in September 2006 and is located since than at 2770 m a.s.l. on a pronounced ridge crest that confines the Hinteres Langtal Cirque to the SW. The water proof casing was attached to a 1.5 m high metal pole which itself was fixed to the bedrock by screws and concrete glue. The viewing direction of the camera is NE. Hence, the image section of the RDC focuses on the rooting zone of the rock glacier and its headwalls up to c. 3000 m a.s.l. Photographs were taken daily at 3 pm providing the optimal lighting conditions in the relevant part of the cirque. 720 photographs were taken continuously in the period 12.09.2006 to 31.08.2008. These optical data were analysed by applying GIS and remote sensing techniques regarding snow-cover distribution

  13. Modeling Root Zone Effects on Preferred Pathways for the Passive Transport of Ions and Water in Plant Roots

    PubMed Central

    Foster, Kylie J.; Miklavcic, Stanley J.

    2016-01-01

    We extend a model of ion and water transport through a root to describe transport along and through a root exhibiting a complexity of differentiation zones. Attention is focused on convective and diffusive transport, both radially and longitudinally, through different root tissue types (radial differentiation) and root developmental zones (longitudinal differentiation). Model transport parameters are selected to mimic the relative abilities of the different tissues and developmental zones to transport water and ions. For each transport scenario in this extensive simulations study, we quantify the optimal 3D flow path taken by water and ions, in response to internal barriers such as the Casparian strip and suberin lamellae. We present and discuss both transient and steady state results of ion concentrations as well as ion and water fluxes. We find that the peak in passive uptake of ions and water occurs at the start of the differentiation zone. In addition, our results show that the level of transpiration has a significant impact on the distribution of ions within the root as well as the rate of ion and water uptake in the differentiation zone, while not impacting on transport in the elongation zone. From our model results we infer information about the active transport of ions in the different developmental zones. In particular, our results suggest that any uptake measured in the elongation zone under steady state conditions is likely to be due to active transport. PMID:27446144

  14. Modeling Root Zone Effects on Preferred Pathways for the Passive Transport of Ions and Water in Plant Roots.

    PubMed

    Foster, Kylie J; Miklavcic, Stanley J

    2016-01-01

    We extend a model of ion and water transport through a root to describe transport along and through a root exhibiting a complexity of differentiation zones. Attention is focused on convective and diffusive transport, both radially and longitudinally, through different root tissue types (radial differentiation) and root developmental zones (longitudinal differentiation). Model transport parameters are selected to mimic the relative abilities of the different tissues and developmental zones to transport water and ions. For each transport scenario in this extensive simulations study, we quantify the optimal 3D flow path taken by water and ions, in response to internal barriers such as the Casparian strip and suberin lamellae. We present and discuss both transient and steady state results of ion concentrations as well as ion and water fluxes. We find that the peak in passive uptake of ions and water occurs at the start of the differentiation zone. In addition, our results show that the level of transpiration has a significant impact on the distribution of ions within the root as well as the rate of ion and water uptake in the differentiation zone, while not impacting on transport in the elongation zone. From our model results we infer information about the active transport of ions in the different developmental zones. In particular, our results suggest that any uptake measured in the elongation zone under steady state conditions is likely to be due to active transport.

  15. Root Zone Respiration on Hydroponically Grown Wheat Plant Systems

    NASA Technical Reports Server (NTRS)

    Soler-Crespo, R. A.; Monje, O. A.

    2010-01-01

    Root respiration is a biological phenomenon that controls plant growth and physiological development during a plant's lifespan. This process is dependent on the availability of oxygen in the system where the plant is located. In hydroponic systems, where plants are submerged in a solution containing vital nutrients but no type of soil, the availability of oxygen arises from the dissolved oxygen concentration in the solution. This oxygen concentration is dependent on the , gas-liquid interface formed on the upper surface of the liquid, as given by Henry's Law, depending on pressure and temperature conditions. Respiration rates of the plants rise as biomass and root zone increase with age. The respiration rate of Apogee wheat plants (Triticum aestivum) was measured as a function of light intensity (catalytic for photosynthesis) and CO2 concentration to determine their effect on respiration rates. To determine their effects on respiration rate and plant growth microbial communities were introduced into the system, by Innoculum. Surfactants were introduced, simulating gray-water usage in space, as another factor to determine their effect on chemical oxygen demand of microbials and on respiration rates of the plants. It is expected to see small effects from changes in CO2 concentration or light levels, and to see root respiration decrease in an exponential manner with plant age and microbial activity.

  16. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    Euser, Tanja; McMillan, Hilary; Hrachowitz, Markus; Winsemius, Hessel; Savenije, Hubert

    2015-04-01

    The root zone water storage capacity (Sr) of a catchment is an important variable for the hydrological behaviour of a catchment; it strongly influences the storage, transpiration and runoff generation in an area. However, the root zone storage capacity is largely heterogeneous and not measurable. There are different theories about the variables affecting the root zone storage capacity; among the most debated are soil, vegetation and climate. The effect of vegetation and soil is often accounted for by detailed soil and land use maps. To investigate the effect of climate on the root zone storage capacity, an analogue can be made between the root zone storage capacity of a catchment and the human habit to design and construct reservoirs: both storage capacities help to overcome a dry period of a certain length. Humans often use the mass curve technique to determine the required storage needed to design the reservoir capacity. This mass curve technique can also be used to derive the root zone storage capacity created by vegetation in a certain ecosystem and climate (Gao et al., 2014). Only precipitation and discharge or evaporation data are required for this method. This study tests whether Sr values derived by both the mass curve technique and from soil maps are comparable for a range of catchments in New Zealand. Catchments are selected over a gradient of climates and land use. Special focus lies on how Sr values derived for a larger catchment are representative for smaller nested catchments. The spatial differences are examined between values derived from soil data and from climate and flow data. Gao, H., Hrachowitz, M., Schymanski, S.J., Fenicia, F., Sriwongsitanon, N., Savenije, H.H.G, (2014): Climate controls how ecosystems size the root zone storage capacity at catchment scale. DOI: 10.1002/2014GL061668

  17. Fruit removal increases root-zone respiration in cucumber

    PubMed Central

    Kläring, H.-P.; Hauschild, I.; Heißner, A.

    2014-01-01

    Background and Aims Many attempts have been made to avoid the commonly observed fluctuations in fruit initiation and fruit growth in crop plants, particularly in cucumber (Cucumis sativus). Weak sinks of the fruit have been assumed to result in low sink/source ratios for carbohydrates, which may inhibit photosynthesis. This study focuses on the effects of low sink–source ratios on photosynthesis and respiration, and in particular root-zone respiration. Methods Mature fruit-bearing cucumber plants were grown in an aerated nutrient solution. The root containers were designed as open chambers to allow measurement of CO2 gas exchange in the root zone. A similar arrangement in a gas-exchange cuvette enabled simultaneous measurements of CO2 exchange in the shoot and root zones. Key Results Reducing the sinks for carbohydrates by removing all fruit from the plants always resulted in a doubling of CO2 exchange in the root zone within a few hours. However, respiration of the shoot remained unaffected and photosynthesis was only marginally reduced, if at all. Conclusions The results suggest that the increased level of CO2 gas exchange in the root zone after removing the carbon sinks in the shoot is due primarily to the exudation of organic compounds by the roots and their decomposition by micro-organisms. This hypothesis must be tested in further experiments, but if proved correct it would make sense to include carbon leakage by root exudation in cucumber production models. In contrast, inhibition of photosynthesis was measurable only at zero fruit load, a situation that does not occur in cucumber production systems, and models that estimate production can therefore ignore (end-product) inhibition of photosynthesis. PMID:25301817

  18. Root-Zone Glyphosate Exposure Adversely Affects Two Ditch Species

    PubMed Central

    Saunders, Lyndsay E.; Koontz, Melissa B.; Pezeshki, Reza

    2013-01-01

    Glyphosate, one of the most applied herbicides globally, has been extensively studied for its effects on non-target organisms. In the field, following precipitation, glyphosate runs off into agricultural ditches where it infiltrates into the soil and thus may encounter the roots of vegetation. These edge-of-field ditches share many characteristics with wetlands, including the ability to reduce loads of anthropogenic chemicals through uptake, transformation, and retention. Different species within the ditches may have a differential sensitivity to exposure of the root zone to glyphosate, contributing to patterns of abundance of ruderal species. The present laboratory experiment investigated whether two species commonly found in agricultural ditches in southcentral United States were affected by root zone glyphosate in a dose-dependent manner, with the objective of identifying a sublethal concentration threshold. The root zone of individuals of Polygonum hydropiperoides and Panicum hemitomon were exposed to four concentrations of glyphosate. Leaf chlorophyll content was measured, and the ratio of aboveground biomass to belowground biomass and survival were quantified. The findings from this study showed that root zone glyphosate exposure negatively affected both species including dose-dependent reductions in chlorophyll content. P. hydropiperdoides showed the greatest negative response, with decreased belowground biomass allocation and total mortality at the highest concentrations tested. PMID:24833234

  19. Effects of partial root-zone irrigation on hydraulic conductivity in the soil–root system of maize plants

    PubMed Central

    Hu, Tiantian; Kang, Shaozhong; Li, Fusheng; Zhang, Jianhua

    2011-01-01

    Effects of partial root-zone irrigation (PRI) on the hydraulic conductivity in the soil–root system (Lsr) in different root zones were investigated using a pot experiment. Maize plants were raised in split-root containers and irrigated on both halves of the container (conventional irrigation, CI), on one side only (fixed PRI, FPRI), or alternately on one of two sides (alternate PRI, APRI). Results show that crop water consumption was significantly correlated with Lsr in both the whole and irrigated root zones for all three irrigation methods but not with Lsr in the non-irrigated root zone of FPRI. The total Lsr in the irrigated root zone of two PRIs was increased by 49.0–92.0% compared with that in a half root zone of CI, suggesting that PRI has a significant compensatory effect of root water uptake. For CI, the contribution of Lsr in a half root zone to Lsr in the whole root zone was ∼50%. For FPRI, the Lsr in the irrigated root zone was close to that of the whole root zone. As for APRI, the Lsr in the irrigated root zone was greater than that of the non-irrigated root zone. In comparison, the Lsr in the non-irrigated root zone of APRI was much higher than that in the dried zone of FPRI. The Lsr in both the whole and irrigated root zones was linearly correlated with soil moisture in the irrigated root zone for all three irrigation methods. For the two PRI treatments, total water uptake by plants was largely determined by the soil water in the irrigated root zone. Nevertheless, the non-irrigated root zone under APRI also contributed to part of the total crop water uptake, but the continuously non-irrigated root zone under FPRI gradually ceased to contribute to crop water uptake, suggesting that it is the APRI that can make use of all the root system for water uptake, resulting in higher water use efficiency. PMID:21527627

  20. Degradation of Surfactants in Hydroponic Wheat Root Zones

    NASA Astrophysics Data System (ADS)

    Monje, Oscar; McCoy, Lashelle; Flanagan, Aisling

    Hygiene water recycling in recirculating hydroponic systems can be enhanced by plant roots by providing a substrate and root exudates for bacterial growth. However, reduced plant growth can occur during batch mode additions of high concentrations of surfactant. An analog hygiene water stream containing surfactants (Steol CS330, Mirataine CB) was added to a hydroponically-grown wheat plant root zone. The plants were grown at 700 mol mol-1 CO2, a photosynthetic photon flux of 300 mol m-2 s-1, and a planting density of 380 plants m-2. Volumetric oxygen mass transfer coefficients were determined using the fermentative/dynamic outgassing method to maintain adequate oxygen mass transfer rates in the root zone. This analysis suggested an optimal flow rate of the hydroponic solution of 5 L min-1. The hydroponic system was inoculated with biofilm from a bioreactor and rates of surfactant degradation were measured daily based on reduction in chemical oxygen demand (COD). The COD decreased from 400 to 100 mg L-1 after 2 days following batch addition of the analog hygiene water to the hydroponic system. Measurements of dissolved oxygen concentration and solution temperature suggest that the root zone was provided adequate aeration to meet both oxygen demands from plant and microbial respiration during the degradation of the surfactant. Results from this study show that hydroponic systems can be used to enhance rates of hygiene water processing.

  1. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    de Boer-Euser, Tanja; McMillan, Hilary; Hrachowitz, Markus; Winsemius, Hessel; Savenije, Hubert

    2016-04-01

    The catchment representative root zone storage capacity (Sr), i.e. the plant available soil water, is an important parameter of hydrological systems. It does not only influence the runoff from catchments, by controlling the partitioning of water fluxes but it also influences the local climate, by providing the source for transpiration. Sr is difficult to observe at catchment scale, due to heterogeneities in vegetation and soils. Sr estimates are traditionally derived from soil characteristics and estimates of root depths. In contrast, a recently suggested method allows the determination of Sr based on climate data, i.e. precipitation and evaporation, alone (Gao et al., 2014). By doing so, the time-variable size of Sr, is explicitly accounted for, which is not the case for traditional soil based methods. The time-variable size of Sr reflects root growth and thus the vegetation's adaption to medium-term fluctuations in the climate. Thus, we tested and compared Sr estimates from this 'climate based method' with estimates from soil data for 32 catchments in New Zealand. The results show a larger range in climate derived Sr than in soil derived Sr. Using a model experiment, we show that a model using the climate derived Sr is more accurately able to reproduce a set of hydrological regime signatures, in particular for humid catchments. For more arid catchments, the two methods provide similar model results. This implies that, although soil database information has some predictive power for model soil storage capacity, climate has a similar or greater control on Sr, as climate affects the evolving hydrological functioning of the root zone at the time scale of hydrological interest. In addition, Sr represents the plant available water and thus root surface, volume and density, and is therefore a more complete descriptor of vegetation influence on water fluxes than mere root depth. On balance, the results indicate that climate has a higher explanatory power than soils for

  2. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    de Boer-Euser, T.; McMillan, H.; Hrachowitz, M.; Winsemius, H.; Savenije, H.

    2015-12-01

    The catchment representative root zone storage capacity (Sr), i.e. the plant available soil water, is an important parameter of hydrological systems. It does not only influence the runoff from catchments, by controlling the partitioning of water fluxes but it also influences the local climate, by providing the source for transpiration. Sr is difficult to observe at catchment scale, due to heterogeneities in vegetation and soils. Sr estimates are traditionally derived from soil characteristics and estimates of root depths. In contrast, a recently suggested method allows the determination of Sr based on climate data, i.e. precipitation and evaporation, alone (Gao et al., 2014). By doing so, the time-variable size of Sr, is explicitly accounted for, which is not the case for traditional soil based methods. The time-variable size of Sr reflects root growth and thus the vegetation's adaption to medium-term fluctuations in the climate. Thus, we tested and compared Sr estimates from this 'climate based method' with estimates from soil data for 32 catchments in New Zealand. The results show a larger range in climate derived Sr than in soil derived Sr. Using a model experiment, we show that a model using the climate derived Sr is more accurately able to reproduce a set of hydrological regime signatures, in particular for humid catchments. For more arid catchments, the two methods provide similar model results. This implies that, although soil information has some predictive power for Sr, climate has a similar or greater control on Sr, as climate affects the evolving hydrological functioning of the root zone at the time scale of hydrological interest. In addition, Sr represents the plant available water and thus root surface, volume and density, and is therefore a more complete descriptor of vegetation influence on water fluxes than mere root depth. On balance, the results indicate that climate has a higher explanatory power than soils for catchment representative Sr.

  3. Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity

    NASA Technical Reports Server (NTRS)

    Stout, S. C.; Porterfield, D. M.; Briarty, L. G.; Kuang, A.; Musgrave, M. E.

    2001-01-01

    A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur

  4. Monitoring and Modelling of Soil-Plant Interactions: the Joint Use of ERT, Sap Flow and Eddy Covariance to Define the Volume of Orange Tree Active Root Zones.

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Vanella, D.; Perri, M. T.; Consoli, S.

    2014-12-01

    Mass and energy exchanges between soil, plants and atmosphere are key factors controlling a number of environmental processes involving hydrology, biota and climate. The understanding of these exchanges also play a critical role for practical purposes such as precision agriculture. In this contribution we present a methodology based on coupling innovative data collection and models. In particular we propose the use of hydro-geophysical monitoring via 4D Electrical Resistivity Tomography (ERT) in conjunction with measurements of plant transpiration via sap flow and evapotranspiration from Eddy Correlation (EC). This abundance of data are to be fed in spatially distributed soil models in order to comprehend the distribution of active roots. We conducted experiments in an orange orchard in Eastern Sicily (Italy). We installed a 3D electrical tomography apparatus consisting of 4 instrumented micro boreholes placed at the corners of a square (about 1.3 m in side) surrounding an orange tree. During the monitoring, we collected repeated ERT and TDR soil moisture measurements, soil water sampling, sap flow measurements from the orange tree and EC data. Irrigation, precipitation, sap flow and ET data are available for a long period of time allowing knowledge of the long term forcing conditions on the system. This wealth of information was used to calibrate a 1D Richards' equation model representing the dynamics of the volume monitored via 3D ERT. Information on the soil hydraulic properties was collected from laboratory experiments as well as by time-lapse ERT monitoring of irrigation a few months after the main experiment, when the orange tree had been cut. The results of the calibrated modeling exercise allow the quantification of the soil volume interested by root water uptake. This volume is much smaller (an area less than 2 square meters, 40 cm thick) than generally believed and assumed in the design of classical drip irrigation schemes.

  5. Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey

    PubMed Central

    Trevisan, Sara; Manoli, Alessandro; Ravazzolo, Laura; Botton, Alessandro; Pivato, Micaela; Masi, Antonio; Quaggiotti, Silvia

    2015-01-01

    Nitrate is an essential nutrient for plants, and crops depend on its availability for growth and development, but its presence in agricultural soils is far from stable. In order to overcome nitrate fluctuations in soil, plants have developed adaptive mechanisms allowing them to grow despite changes in external nitrate availability. Nitrate can act as both nutrient and signal, regulating global gene expression in plants, and the root tip has been proposed as the sensory organ. A set of genome-wide studies has demonstrated several nitrate-regulated genes in the roots of many plants, although only a few studies have been carried out on distinct root zones. To unravel new details of the transcriptomic and proteomic responses to nitrate availability in a major food crop, a double untargeted approach was conducted on a transition zone-enriched root portion of maize seedlings subjected to differing nitrate supplies. The results highlighted a complex transcriptomic and proteomic reprogramming that occurs in response to nitrate, emphasizing the role of this root zone in sensing and transducing nitrate signal. Our findings indicated a relationship of nitrate with biosynthesis and signalling of several phytohormones, such as auxin, strigolactones, and brassinosteroids. Moreover, the already hypothesized involvement of nitric oxide in the early response to nitrate was confirmed with the use of nitric oxide inhibitors. Our results also suggested that cytoskeleton activation and cell wall modification occurred in response to nitrate provision in the transition zone. PMID:25911739

  6. [Effects of controlled alternate partial root-zone drip irrigation on apple seedling morphological characteristics and root hydraulic conductivity].

    PubMed

    Yang, Qi-Liang; Zhang, Fu-Cang; Liu, Xiao-Gang; Ge, Zhen-Yang

    2012-05-01

    To investigate the effects of alternate partial root-zone drip irrigation (ADI) on the morphological characteristics and root hydraulic conductivity of apple seedlings, three irrigation modes, i.e., fixed partial root-zone drip irrigation (FDI, fixed watering on one side of the seedling root zone), controlled alternate partial root-zone drip irrigation (ADI, alternate watering on both sides of the seedling root zone), and conventional drip irrigation (CDI, watering cling to the seedling base), and three irrigation quotas, i. e., each irrigation amount of FDI and ADI was 10, 20 and 30 mm, and that of CDI was 20, 30 and 40 mm, respectively, were designed. In treatment ADI, the soil moisture content on the both sides of the root zone appeared a repeated alternation of dry and wet process; while in treatment CDI, the soil moisture content had less difference. At the same irrigation quotas, the soil moisture content at the watering sides had no significant difference under the three drip irrigation modes. At irrigation quota 30 mm, the root-shoot ratio, healthy index of seedlings, and root hydraulic conductivity in treatment ADI increased by 31.6% and 47.1%, 34.2% and 53.6%, and 9.0% and 11.0%, respectively, as compared with those in treatments CDI and FDI. The root dry mass and leaf area had a positive linear correlation with root hydraulic conductivity. It was suggested that controlled alternate partial root-zone drip irrigation had obvious compensatory effects on the root hydraulic conductivity of apple seedlings, improved the soil water use by the roots, benefited the equilibrated dry matter allocation in seedling organs, and markedly enhanced the root-shoot ratio and healthy index of the seedlings.

  7. Nodulation and root traits in four grasspea (Lathyrus sativus) ecotypes under root-zone temperatures.

    PubMed

    Mahdavi, B; Sanavy, Seyed Ali Mohammad Modarres; Aghaalikhani, Majid

    2007-04-15

    In order to study the effect of four Root-Zone Temperatures (RZT) (5, 10, 15 and 25 degrees C) on nodulation and nitrogen percent of four grasspea ecotypes (ardabil, zanjan, mashhad and sharkord), an experiment was conducted in a controlled-environmental chamber in 2005. There were differences (p < 0.01) among ecotypes, RZT and ecotypes *RZT for root length, forage dry matter, root dry matter, nodule dry weight, nodule number, nodule cluster number, nodule cluster diameter, nodule diameter, nodule distribution (root length that has nodule) and plant nitrogen percent. Mashad and ardabil ecotypes produced the most and least nodule number at 25 and 5 degrees C, respectively. The maximum and minimum nodule cluster number were observed in ardabil ecotype under 25 and 5 degrees C RZT, respectively. Root distribution was the most and the least in mashhad and ardabil ecotypes under 25 and 5 degrees C RZT, respectively. Ardabil produced the highest dry nodule weight at 25 degrees C RZT. The least dry nodule weight was belonged to ardabil ecotype under 5 degrees C RZT. Plant nitrogen percent was the highest in ardabile ecotype at 15 degrees C RZT and the lowest in mashhad ecotype under 5 degrees C RZT. This experiment showed that at low RZT (i.e., 5 and 10 degrees C) none of ecotypes had preferred on other ecotypes in point of view measured traits except nodule diameter. Ardabile and mashhad ecotypes were better than other ecotypes at 15 and 25 degrees C RZT respectively for most traits.

  8. The SMAP Level 4 Surface and Root Zone Soil Moisture data assimilation product

    NASA Astrophysics Data System (ADS)

    Reichle, R. H.; De Lannoy, G. J. M.; Crow, W. T.; Kimball, J. S.; Koster, R. D.; Liu, Q.

    2014-12-01

    The NASA Soil Moisture Active Passive (SMAP) mission is scheduled for launch in January 2015 and will provide L-band radar and radiometer observations that are sensitive to surface soil moisture (in the top few centimeters of the soil column). For several of the key applications targeted by SMAP, however, knowledge of root zone soil moisture (defined here nominally as soil moisture in the top 1 m of the soil column) is needed. The SMAP mission will therefore provide a value-added Level 4 Surface and Root Zone Soil Moisture (L4_SM) product with the two key objectives: (i) to provide estimates of root zone soil moisture based on SMAP observations, and (ii) to provide a global surface and root zone soil moisture product that is spatially and temporally complete. The L4_SM algorithm uses an ensemble Kalman filter (EnKF) to merge SMAP observations with soil moisture estimates from the NASA GEOS-5 Catchment land surface model. The model describes the vertical transfer of soil moisture between the surface and root zone reservoirs and will be driven with observation-based surface meteorological forcing data, including precipitation, on a global 9 km Earth-fixed grid. The presentation provides an overview of the SMAP L4_SM algorithm and pre-launch validation. Specifically, an L4_SM prototype product based on the assimilation of observations from the Soil Moisture and Ocean Salinity (SMOS) mission was validated using in situ measurements from SMAP core validation sites (densely instrumented watersheds) and from more than 100 single-profile sensors scattered across the United States. The validation results indicate that the prototype soil moisture product satisfies the formal RMSE requirement for the L4_SM product of 0.04 m3/m3 (after removal of the long-term mean bias). An examination of the observation-minus-forecast residuals from the L4_SM system suggests where the system could be improved further.

  9. Root-zone temperatures affect phenology of bud break, flower cluster development, shoot extension growth and gas exchange of 'Braeburn' (Malus domestica) apple trees.

    PubMed

    Greer, Dennis H; Wünsche, Jens N; Norling, Cara L; Wiggins, Harry N

    2006-01-01

    We investigated the effects of root-zone temperature on bud break, flowering, shoot growth and gas exchange of potted mature apple (Malus domestica (Borkh.)) trees with undisturbed roots. Soil respiration was also determined. Potted 'Braeburn' apple trees on M.9 rootstock were grown for 70 days in a constant day/night temperature regime (25/18 degrees C) and one of three constant root-zone temperatures (7, 15 and 25 degrees C). Both the proportion and timing of bud break were significantly enhanced as root-zone temperature increased. Rate of floral cluster opening was also markedly increased with increasing root-zone temperature. Shoot length increased but shoot girth growth declined as root-zone temperatures increased. Soil respiration and leaf photosynthesis generally increased as root-zone temperatures increased. Results indicate that apple trees growing in regions where root zone temperatures are < or = 15 degrees C have delayed bud break and up to 20% fewer clusters than apple trees exposed to root zone temperatures of > or = 15 degrees C. The effect of root-zone temperature on shoot performance may be mediated through the mobilization of root reserves, although the role of phytohormones cannot be discounted. Variation in leaf photosynthesis across the temperature treatments was inadequately explained by stomatal conductance. Given that root growth increases with increasing temperature, changes in sink activity induced by the root-zone temperature treatments provide a possible explanation for the non-stomatal effect on photosynthesis. Irrespective of underlying mechanisms, root-zone temperatures influence bud break and flowering in apple trees.

  10. [Effects of exogenous glucose and starch on soil carbon metabolism of root zone and root function in potted sweet cherry].

    PubMed

    Zhou, Wen-jie; Zhang, Peng; Qin, Si-jun; Lyu, De-guo

    2015-11-01

    One-year-old potted sweet cheery trees were treated with 4 g · kg(-1) exogenous glucose or starch and with non-addition of exogenous carbon as the control for up to 60 days. Soil of root zone was sampled to analyze soil microbial biomass carbon, activities of invertase and amylase and microbial community functional diversity during the 60-day treatment, and roots were sampled for analysis of root respiratory rate, respiratory pathways and root viability after treatment for 30 days. Results showed that the invertase activity and the microbial biomass carbon initially increased and decreased subsequently, with the maxima which were 14.0% and 13.1% higher in the glucose treatment than in the control treatment appeared after 15 and 7 days of treatments, respectively. Soil organic matter content increased first then decreased and finally moderately increased again. Amylase activity was 7.5-fold higher in the starch treatment than in the control treatment after 15-day treatment. Soil microbial biomass carbon was higher in the starch treatment than in the control treatment except after 7-day treatment. Soil organic matter content initially increased and then decreased, but it was still 19.8% higher than in the control after 60-day treatment. BIOLOG results showed that the maximum average well color development (AWCD) value and microbial activity appeared after 15-day treatment in the following order: starch>glucose>control. After 30-day treatment, glucose treatment resulted in a significant increase in the soil microbial utilization of carbohydrates, carboxylic acid, amino acids, phenolic acids and amines, and starch treatment significantly increased the soil microbial utilization of carbohydrates, carboxylic acid, polymers and phenolic acids. After 30-day treatment, the total root respiratory rate and root viability were 21.4%, 19.4% and 65.5%, 37.0% higher in glucose treatment than in the control and starch treatments, respectively. These results indicated exogenous

  11. Predicting root zone soil moisture using surface data

    NASA Astrophysics Data System (ADS)

    Manfreda, S.; Brocca, L.; Moramarco, T.; Melone, F.; Sheffield, J.; Fiorentino, M.

    2012-04-01

    In recent years, much effort has been given to monitoring of soil moisture from satellite remote sensing. These tools represent an extraordinary source of information for hydrological applications, but they only provide information on near-surface soil moisture. In the present work, we developed a new formulation for the estimation of the soil moisture in the root zone based on the measured value of soil moisture at the surface. The method derives from a simplified form of the soil water balance equation and for this reason all parameters adopted are physically consistent. The formulation provides a closed form of the relationship between the root zone soil moisture and the surface soil moisture with a limited number of parameters, such as: the ratio between the depth of the surface layer and the deeper layer, the water loss coefficient, and the field capacity. The method has been tested using modeled soil moisture obtained from the North American Land Data Assimilation System (NLDAS). The NLDAS is a multi-institution partnership aimed at developing a retrospective data set, using available atmospheric and land surface meteorological observations to compute the land surface hydrological budget. The NLDAS database was extremely useful for the scope of the present research since it provides simulated data over an extended area with different climatic and physical condition and moreover it provides soil moisture data averaged over different depths. In particular, we used values in the top 10 cm and 100 cm layers. One year of simulation was used to test the ability of the developed method to describe soil moisture fluctuation in the 100cm layer over the entire NLDAS domain. The method was adopted by calibrating one of its three parameters and defining the remaining two based on physical characteristics of the site (using the potential evapotranspiration and ratio between the first and the second soil layer depth). In general, the method performed better than

  12. Movement of endogenous calcium in the elongating zone of graviresponding roots of Zea mays

    NASA Technical Reports Server (NTRS)

    Moore, R.; Cameron, I. L.; Smith, N. K.

    1989-01-01

    Endogenous calcium (Ca) accumulates along the lower side of the elongating zone of horizontally oriented roots of Zea mays cv. Yellow Dent. This accumulation of Ca correlates positively with the onset of gravicurvature, and occurs in the cytoplasm, cell walls and mucilage of epidermal cells. Corresponding changes in endogenous Ca do not occur in cortical cells of the elongating zone of intact roots. These results indicate that the calcium asymmetries associated with root gravicurvature occur in the outermost layers of the root.

  13. Cassava root membrane proteome reveals activities during storage root maturation.

    PubMed

    Naconsie, Maliwan; Lertpanyasampatha, Manassawe; Viboonjun, Unchera; Netrphan, Supatcharee; Kuwano, Masayoshi; Ogasawara, Naotake; Narangajavana, Jarunya

    2016-01-01

    Cassava (Manihot esculenta Crantz) is one of the most important crops of Thailand. Its storage roots are used as food, feed, starch production, and be the important source for biofuel and biodegradable plastic production. Despite the importance of cassava storage roots, little is known about the mechanisms involved in their formation. This present study has focused on comparison of the expression profiles of cassava root proteome at various developmental stages using two-dimensional gel electrophoresis and LC-MS/MS. Based on an anatomical study using Toluidine Blue, the secondary growth was confirmed to be essential during the development of cassava storage root. To investigate biochemical processes occurring during storage root maturation, soluble and membrane proteins were isolated from storage roots harvested from 3-, 6-, 9-, and 12-month-old cassava plants. The proteins with differential expression pattern were analysed and identified to be associated with 8 functional groups: protein folding and degradation, energy, metabolism, secondary metabolism, stress response, transport facilitation, cytoskeleton, and unclassified function. The expression profiling of membrane proteins revealed the proteins involved in protein folding and degradation, energy, and cell structure were highly expressed during early stages of development. Integration of these data along with the information available in genome and transcriptome databases is critical to expand knowledge obtained solely from the field of proteomics. Possible role of identified proteins were discussed in relation with the activities during storage root maturation in cassava.

  14. Vegetative growth and cluster development in Shiraz grapevines subjected to partial root-zone cooling.

    PubMed

    Rogiers, Suzy Y; Clarke, Simon J

    2013-01-01

    Heterogeneity in root-zone temperature both vertically and horizontally may contribute to the uneven vegetative and reproductive growth often observed across vineyards. An experiment was designed to assess whether the warmed half of a grapevine root zone could compensate for the cooled half in terms of vegetative growth and reproductive development. We divided the root system of potted Shiraz grapevines bilaterally and applied either a cool or a warm treatment to each half from budburst to fruit set. Shoot growth and inflorescence development were monitored over the season. Simultaneous cooling and warming of parts of the root system decreased shoot elongation, leaf emergence and leaf expansion below that of plants with a fully warmed root zone, but not to the same extent as those with a fully cooled root zone. Inflorescence rachis length, flower number and berry number after fertilization were smaller only in those vines exposed to fully cooled root zones. After terminating the treatments, berry enlargement and the onset of veraison were slowed in those vines that had been exposed to complete or partial root-zone cooling. Grapevines exposed to partial root-zone cooling were thus delayed in vegetative and reproductive development, but the inhibition was greater in those plants whose entire root system had been cooled.

  15. Improving root-zone soil moisture estimations using dynamic root growth and crop phenology

    NASA Astrophysics Data System (ADS)

    Hashemian, Minoo; Ryu, Dongryeol; Crow, Wade T.; Kustas, William P.

    2015-12-01

    Water Energy Balance (WEB) Soil Vegetation Atmosphere Transfer (SVAT) modelling can be used to estimate soil moisture by forcing the model with observed data such as precipitation and solar radiation. Recently, an innovative approach that assimilates remotely sensed thermal infrared (TIR) observations into WEB-SVAT to improve the results has been proposed. However, the efficacy of the model-observation integration relies on the model's realistic representation of soil water processes. Here, we explore methods to improve the soil water processes of a simple WEB-SVAT model by adopting and incorporating an exponential root water uptake model with water stress compensation and establishing a more appropriate soil-biophysical linkage between root-zone moisture content, above-ground states and biophysical indices. The existing WEB-SVAT model is extended to a new Multi-layer WEB-SVAT with Dynamic Root distribution (MWSDR) that has five soil layers. Impacts of plant root depth variations, growth stages and phenological cycle of the vegetation on transpiration are considered in developing stages. Hydrometeorological and biogeophysical measurements collected from two experimental sites, one in Dookie, Victoria, Australia and the other in Ponca, Oklahoma, USA, are used to validate the new model. Results demonstrate that MWSDR provides improved soil moisture, transpiration and evaporation predictions which, in turn, can provide an improved physical basis for assimilating remotely sensed data into the model. Results also show the importance of having an adequate representation of vegetation-related transpiration process for an appropriate simulation of water transfer in a complicated system of soil, plants and atmosphere.

  16. Root Zone Soil Moisture Forecasting Using Multivariate Relevance Vector Machines

    NASA Astrophysics Data System (ADS)

    Zaman, B.; McKee, M.

    2009-12-01

    Root zone soil moisture at depths of 1 and 2 meters are forecasted four days into the future. Prediction of soil moisture can be of paramount importance owing to its applicability in soil water balance calculations, modeling of various hydrometeorological, ecological, and biogeochemical factors, and initialization of various land-atmosphere models. In this study, we propose a new multivariate output prediction approach for forecasting root zone soil moisture using learning machine models. These models are known for their robustness, efficiency, and sparseness, and provide a statistically sound approach to solving the inverse problems and thus to building statistical models. The multivariate relevance vector machine (MVRVM) is used to build a model that predicts future soil state based upon current soil moisture and soil temperature conditions. The predicting function learns the input-output response pattern from the training dataset. Soil moisture measurements acquired by the Soil Climate Analysis Network (SCAN) site at Rees Center, Texas are used for this study. The methodology combines the data at different depths from 5 cm to 50 cm, the largest of which corresponds to the depth at which the soil moisture sensors are generally operational, to produce soil moisture predictions at larger depths. The MVRVM model demonstrates superior performance. The results for soil moisture predictions at 1 m and 2 m depth for the fourth day are excellent, with RMSE = 0.0125 m3water/m3soil; IoA = 0.96; CoE = 0.88 at 1 m depth, and RMSE = 0.0021 m3/m3; IoA = 0.98; CoE = 0.93 for 2 m depth. The statistics indicate good model generalization capability and computations show good agreement with the actual soil moisture measurements with R2 = 0.89 and R2 = 0.94 for 1 m and 2 m depths on fourth day, respectively. The MVRVM produces good results for all four days with a reduced computational complexity and more suitable real-time implementation. Bootstrapping is used to check over

  17. Effect of cadmium on diaphorase activity and nitric oxide production in barley root tips.

    PubMed

    Valentovicová, Katarína; Halusková, L'ubica; Huttová, Jana; Mistrík, Igor; Tamás, Ladislav

    2010-01-01

    The effect of Cd on NADPH-diaphorase activity and nitric oxide (NO) production was investigated in barley root tips. The Cd-induced increase of NADPH-diaphorase activity occurred at the elongation zone and increased further in the differentiation zone of barley root tips. This activity was associated primarily with the microsomal membrane fraction of crude extract. In situ analysis revealed that the diaphorase activity was localized in the metaxylem and metaphloem elements and to some cells of the pericycle and parenchyma of root tips. Cd-induced NO generation was observed in pericycle, parenchymatic stelar cells and companion cells of protophloem. The results suggest that the Cd-induced generation of NO functions in Cd toxicity through the ectopic and accelerated differentiation of root tips, causing the shortening of the root elongation zone and a subsequent reduction in root growth.

  18. Water flow and solute transport in the soil-plant-atmosphere continuum: Upscaling from rhizosphere to root zone

    NASA Astrophysics Data System (ADS)

    Lazarovitch, Naftali; Perelman, Adi; Guerra, Helena; Vanderborght, Jan; Pohlmeier, Andreas

    2016-04-01

    Root water and nutrient uptake are among the most important processes considered in numerical models simulating water content and fluxes in the subsurface, as they control plant growth and production as well as water flow and nutrient transport out of the root zone. Root water uptake may lead to salt accumulation at the root-soil interface, resulting in rhizophere salt concentrations much higher than in the bulk soil. This salt accumulation is caused by soluble salt transport towards the roots by mass flow through the soil, followed by preferential adsorption of specific nutrients by active uptake, thereby excluding most other salts at the root-soil interface or in the root apoplast. The salinity buildup can lead to large osmotic pressure gradients across the roots thereby effectively reducing root water uptake. The initial results from rhizoslides (capillary paper growth system) show that sodium concentration is decreasing with distance from the root, compared with the bulk that remained more stable. When transpiration rate was decreased under high salinity levels, sodium concentration was more homogenous compared with low salinity levels. Additionally, sodium and gadolinium distributions were measured nondestructively around tomato roots using magnetic resonance imaging (MRI). This technique could also observe the root structure and water content around single roots. Results from the MRI confirm the solutes concentration pattern around roots and its relation to their initial concentration. We conclude that local water potentials at the soil-root interface differ from bulk potentials. These relative differences increase with decreasing root density, decreasing initial salt concentration and increasing transpiration rate. Furthermore, since climate may significantly influence plant response to salinity a dynamic climate-coupled salinity reduction functions are critical in while using macroscopic numerical models.

  19. Root Zone Sensors for Irrigation Management in Intensive Agriculture

    PubMed Central

    Pardossi, Alberto; Incrocci, Luca; Incrocci, Giorgio; Malorgio, Fernando; Battista, Piero; Bacci, Laura; Rapi, Bernardo; Marzialetti, Paolo; Hemming, Jochen; Balendonck, Jos

    2009-01-01

    Crop irrigation uses more than 70% of the world’s water, and thus, improving irrigation efficiency is decisive to sustain the food demand from a fast-growing world population. This objective may be accomplished by cultivating more water-efficient crop species and/or through the application of efficient irrigation systems, which includes the implementation of a suitable method for precise scheduling. At the farm level, irrigation is generally scheduled based on the grower’s experience or on the determination of soil water balance (weather-based method). An alternative approach entails the measurement of soil water status. Expensive and sophisticated root zone sensors (RZS), such as neutron probes, are available for the use of soil and plant scientists, while cheap and practical devices are needed for irrigation management in commercial crops. The paper illustrates the main features of RZS’ (for both soil moisture and salinity) marketed for the irrigation industry and discusses how such sensors may be integrated in a wireless network for computer-controlled irrigation and used for innovative irrigation strategies, such as deficit or dual-water irrigation. The paper also consider the main results of recent or current research works conducted by the authors in Tuscany (Italy) on the irrigation management of container-grown ornamental plants, which is an important agricultural sector in Italy. PMID:22574047

  20. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    Boer-Euser, Tanja; McMillan, Hilary K.; Hrachowitz, Markus; Winsemius, Hessel C.; Savenije, Hubert H. G.

    2016-03-01

    Root zone storage capacity (Sr) is an important variable for hydrology and climate studies, as it strongly influences the hydrological functioning of a catchment and, via evaporation, the local climate. Despite its importance, it remains difficult to obtain a well-founded catchment representative estimate. This study tests the hypothesis that vegetation adapts its Sr to create a buffer large enough to sustain the plant during drought conditions of a certain critical strength (with a certain probability of exceedance). Following this method, Sr can be estimated from precipitation and evaporative demand data. The results of this "climate-based method" are compared with traditional estimates from soil data for 32 catchments in New Zealand. The results show that the differences between catchments in climate-derived catchment representative Sr values are larger than for soil-derived Sr values. Using a model experiment, we show that the climate-derived Sr can better reproduce hydrological regime signatures for humid catchments; for more arid catchments, the soil and climate methods perform similarly. This makes the climate-based Sr a valuable addition for increasing hydrological understanding and reducing hydrological model uncertainty.

  1. Root zone sensors for irrigation management in intensive agriculture.

    PubMed

    Pardossi, Alberto; Incrocci, Luca; Incrocci, Giorgio; Malorgio, Fernando; Battista, Piero; Bacci, Laura; Rapi, Bernardo; Marzialetti, Paolo; Hemming, Jochen; Balendonck, Jos

    2009-01-01

    Crop irrigation uses more than 70% of the world's water, and thus, improving irrigation efficiency is decisive to sustain the food demand from a fast-growing world population. This objective may be accomplished by cultivating more water-efficient crop species and/or through the application of efficient irrigation systems, which includes the implementation of a suitable method for precise scheduling. At the farm level, irrigation is generally scheduled based on the grower's experience or on the determination of soil water balance (weather-based method). An alternative approach entails the measurement of soil water status. Expensive and sophisticated root zone sensors (RZS), such as neutron probes, are available for the use of soil and plant scientists, while cheap and practical devices are needed for irrigation management in commercial crops. The paper illustrates the main features of RZS' (for both soil moisture and salinity) marketed for the irrigation industry and discusses how such sensors may be integrated in a wireless network for computer-controlled irrigation and used for innovative irrigation strategies, such as deficit or dual-water irrigation. The paper also consider the main results of recent or current research works conducted by the authors in Tuscany (Italy) on the irrigation management of container-grown ornamental plants, which is an important agricultural sector in Italy.

  2. A statistical retrieval algorithm for root zone soil moisture

    NASA Astrophysics Data System (ADS)

    Lindau, Ralf; Simmer, Clemens

    2014-11-01

    An algorithm for the estimation of root zone soil moisture is presented. Global fields of the soil moisture within the uppermost metre of soil are derived with a temporal resolution of 10 days. For calibration, long-term soil moisture observations from the former Soviet Union are used. The variance of the measurements is largely dominated by the spatial variability of the long-term mean soil moisture, while the temporal variability gives comparatively small contribution. Consequently, the algorithm is organised into two steps. The first step concentrates on the retrieval of the spatial variance of the long-term means, which comprises more than 85% of the total soil moisture variability. A major part of the spatial variance can be explained by four easily available fields: the climatological precipitation, land use, soil texture, and terrain slope. The second step of the algorithm is dedicated to the local temporal variability. This part of variability is recovered by using passive microwave data from scanning multichannel microwave radiometre (SMMR) supported by monthly averaged fields of air temperature and precipitation. The 6-GHz channel of SMMR is shown to be severely disturbed by radio frequency interference, so that information from the 10-GHz channel is used instead. The algorithm provides reasonable soil moisture fields which is confirmed by a comparison with independent measurements from Illinois.

  3. A microwave systems approach to measuring root zone soil moisture

    NASA Technical Reports Server (NTRS)

    Newton, R. W.; Paris, J. F.; Clark, B. V.

    1983-01-01

    Computer microwave satellite simulation models were developed and the program was used to test the ability of a coarse resolution passive microwave sensor to measure soil moisture over large areas, and to evaluate the effect of heterogeneous ground covers with the resolution cell on the accuracy of the soil moisture estimate. The use of realistic scenes containing only 10% to 15% bare soil and significant vegetation made it possible to observe a 60% K decrease in brightness temperature from a 5% soil moisture to a 35% soil moisture at a 21 cm microwave wavelength, providing a 1.5 K to 2 K per percent soil moisture sensitivity to soil moisture. It was shown that resolution does not affect the basic ability to measure soil moisture with a microwave radiometer system. Experimental microwave and ground field data were acquired for developing and testing a root zone soil moisture prediction algorithm. The experimental measurements demonstrated that the depth of penetration at a 21 cm microwave wavelength is not greater than 5 cm.

  4. Polar transport of 45Ca2+ across the elongation zone of gravistimulated roots

    NASA Technical Reports Server (NTRS)

    Lee, J. S.; Evans, M. L.

    1985-01-01

    The movement of calcium across the elongation zone of gravistimulated primary roots of maize (Zea mays L.) was measured using 45Ca2+. Radioactive calcium was applied to one side of the elongation zone about 4 mm back from the root tip and the distribution of radioactivity across the root in the region of application was determined using scintillation spectrometry. The movement of 45Ca2+ across the elongation zone was non-polar in vertically oriented roots. In gravistimulated roots the movement of label was polarized with about twice as much label moving from top to bottom as from bottom to top. A variety of treatments which interfere with gravitropism was found to eliminate the polar movement of 45Ca2+ across the elongation zone. In maize cultivars which require light for gravitropic competency, dark grown roots exhibited neither gravitropism nor polar movement of 45Ca2+ across the elongation zone. Upon illumination the roots developed but gravitropic competency and gravity-induced polar movement of 45Ca2+ across the elongation zone. Similarly, roots of light-grown seedlings lost both gravitropic competency and 45Ca2+ transport polarity upon transfer to the dark. The results indicate a close correlation between calcium movement and gravitropism in primary roots in maize.

  5. Rooting depth and distributions of deep-rooted plants in the 200 Area control zone of the Hanford Site

    SciTech Connect

    Klepper, E.L.; Gano, K.A.; Cadwell, L.L.

    1985-01-01

    This study was conducted to document rooting depths and distributions of deep-rooted plants common to the Hanford Site 200-Area plateau. The effort concentrated on excavating plant species suspected of having deep root systems, and species that have been reported in previous studies to contain radionuclides in above ground parts. The information obtained in this study will be useful in modeling radionuclide transport by plants and in designing covers and barriers for decommissioning low-level radioactive waste burial sites. Fourteen species including 58 individual plants were excavated to measure maximum rooting depth and root density distribution (g dry root/dm/sup 3/) through the root zone. Age and canopy volumes of shrubs were also determined. Eight of the 14 species excavated had average rooting depths of 150 cm or more. The two deepest rooted plants were antelope bitterbrush and sagebrush with average depths of 296 and 200 cm, respectively. Gray rabbitbrush had an average rooting depth of 183 cm. Summer annuals, Russian thistle and bursage, had average rooting depths of 172 and 162 cm, respectively. 7 references, 4 figures, 5 tables.

  6. Durum wheat seedlings in saline conditions: Salt spray versus root-zone salinity

    NASA Astrophysics Data System (ADS)

    Spanò, Carmelina; Bottega, Stefania

    2016-02-01

    Salinity is an increasingly serious problem with a strong negative impact on plant productivity. Though many studies have been made on salt stress induced by high NaCl concentrations in the root-zone, few data concern the response of plants to saline aerosol, one of the main constraints in coastal areas. In order to study more in depth wheat salinity tolerance and to evaluate damage and antioxidant response induced by various modes of salt application, seedlings of Triticum turgidum ssp. durum, cv. Cappelli were treated for 2 and 7 days with salt in the root-zone (0, 50 and 200 mM NaCl) or with salt spray (400 mM NaCl + 0 or 200 mM NaCl in the root-zone). Seedlings accumulated Na+ in their leaves and therefore part of their ability to tolerate high salinity seems to be due to Na+ leaf tissue tolerance. Durum wheat, confirmed as a partially tolerant plant, shows a higher damage under airborne salinity, when both an increase in TBA-reactive material (indicative of lipid peroxidation) and a decrease in root growth were recorded. A different antioxidant response was activated, depending on the type of salt supply. Salt treatment induced a depletion of the reducing power of both ascorbate and glutathione while the highest contents of proline were detected under salt spray conditions. In the short term catalase and ascorbate peroxidase co-operated with glutathione peroxidase in the scavenging of hydrogen peroxide, in particular in salt spray-treated plants. From our data, the durum wheat cultivar Cappelli seems to be sensitive to airborne salinity.

  7. Global root zone storage capacity from satellite-based evaporation data

    NASA Astrophysics Data System (ADS)

    Wang-Erlandsson, Lan; Bastiaanssen, Wim; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel; van Dijk, Albert; Guerschman, Juan; Keys, Patrick; Gordon, Line; Savenije, Hubert

    2016-04-01

    We present an "earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale-independent. In contrast to traditional look-up table approaches, our method captures the variability in root zone storage capacity within land cover type, including in rainforests where direct measurements of root depth otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. We find that evergreen forests are able to create a large storage to buffer for extreme droughts (with a return period of up to 60 years), in contrast to short vegetation and crops (which seem to adapt to a drought return period of about 2 years). The presented method to estimate root zone storage capacity eliminates the need for soils and rooting depth information, which could be a game-changer in global land surface modelling.

  8. Chelate-Assisted Heavy Metal Movement Through the Root Zone

    NASA Astrophysics Data System (ADS)

    Kirkham, M.; Madrid, F.; Liphadzi, M. S.

    2001-12-01

    Chelating agents are added to soil as a means to mobilize heavy metals for plant uptake during phytoremediation. Yet almost no studies follow the displacement of heavy metals through the vadose zone following solubilization with chelating agents. The objective of this work was to determine the movement of heavy metals through the soil profile and their absorption by barley (Hordeum vulgare L.) in a soil amended with biosolids and in the presence of a chelating agent (EDTA). Twelve columns 75 cm in height and 17 in diameter were packed with a Haynie very fine sandy loam (coarse-silty, mixed, calcareous, mesic Mollic Udifluvents) and watered with liquid biosolids applied at the surface at a rate of 120 kg N/ha. Three weeks after plants germinated, soil was irrigated with a solution of the disodium salt of EDTA added at a rate of 0.5 g/kg soil. Four treatments were imposed: columns with no plants and no EDTA; columns with no plants plus EDTA; columns with plants and no EDTA; and columns with plants and EDTA. Columns were watered intensively for 35 days until two pore volumes of water had been added, and the leachates were collected daily. With or without plants, columns with EDTA had lower total concentrations of Cu, Zn, Cd, Ni, and Pb in the surface 20 cm than columns without EDTA. Concentrations of the heavy metals in this layer were not afffected by the presence of roots. Iron in leachate was followed as an indicator metal for movement to groundwater. No iron appeared in the leachate without EDTA, either in the columns with plants or without plants. The peak concentration of iron in the leachate occurred three days earlier in the columns without plants and EDTA compared to the columns with plants and EDTA. The results indicated the importance of vegetation on retarding heavy metal leaching to groundwater during chelate-facilitated phytoremediation.

  9. Electrical impedance imaging of water distribution in the root zone

    NASA Astrophysics Data System (ADS)

    Newill, P.; Karadaglić, D.; Podd, F.; Grieve, B. D.; York, T. A.

    2014-05-01

    The paper describes a technique that is proposed for imaging water transport in and around the root zone of plants using distributed measurements of electrical impedance. The technique has the potential to analyse sub-surface phenotypes, for instance drought tolerance traits in crop breeding programmes. The technical aim is to implement an automated, low cost, instrument for high-throughput screening. Ultimately the technique is targeted at in-field, on-line, measurements. For demonstration purposes the present work considers measurements on laboratory scale rhizotrons housing growing maize plants. Each rhizotron is fitted with 60 electrodes in a rectangular array. To reduce electrochemical effects the capacitively coupled contactless conductivity (C4D) electrodes have an insulating layer on the surface and the resistance of the bulk material is deduced from spectroscopic considerations. Electrical impedance is measured between pairs of electrodes to build up a two-dimensional map. A modified electrical model of such electrodes is proposed which includes the resistive and reactive components of both the insulating layer and the bulk material. Measurements taken on a parallel-plate test cell containing water confirm that the C4D technique is able to measure electrical impedance. The test cell has been used to explore the effects of water content, compaction and temperature on measurements in soil. Results confirm that electrical impedance measurements are very sensitive to moisture content. Impedance fraction changes up to 20% are observed due to compaction up to a pressure of 0.21 kg cm-2 and a temperature fraction sensitivity of about 2%/°C. The effects of compaction and temperature are most significant under dry conditions. Measurements on growing maize reveal the changes in impedance across the rhizotron over a period of several weeks. Results are compared to a control vessel housing only soil.

  10. Trigeminal root entry zone involvement in neuromyelitis optica and multiple sclerosis.

    PubMed

    Sugiyama, Atsuhiko; Mori, Masahiro; Masuda, Hiroki; Uchida, Tomohiko; Muto, Mayumi; Uzawa, Akiyuki; Ito, Shoichi; Kuwabara, Satoshi

    2015-08-15

    Trigeminal root entry zone abnormality on brain magnetic resonance imaging has been frequently reported in multiple sclerosis patients, but it has not been investigated in neuromyelitis optica patients. Brain magnetic resonance imaging of 128 consecutive multiple sclerosis patients and 46 neuromyelitis optica patients was evaluated. Trigeminal root entry zone abnormality was present in 11 (8.6%) of the multiple sclerosis patients and two (4.3%) of the neuromyelitis optica patients. The pontine trigeminal root entry zone may be involved in both multiple sclerosis and neuromyelitis optica.

  11. Actin Cytoskeleton-Based Plant Synapse as Gravitransducer in the Transition Zone of the Root Apex

    NASA Astrophysics Data System (ADS)

    Baluska, Frantisek; Barlow, Peter; Volkmann, Dieter; Mancuso, Stefano

    The actin cytoskeleton was originally proposed to act as the signal transducer in the plant gravity sensory-motoric circuit. Surprisingly, however, several studies have documented that roots perfom gravisensing and gravitropism more effectively if exposed to diverse anti-F-actin drugs. Our study, using decapped maize root apices, has revealed that depolymerization of F-actin stimulates gravity perception in cells of the transition zone where root gravitropism is initiated (Mancuso et al. 2006). It has been proposed (Balǔka et al. 2005, 2009a) that s the non-growing adhesive end-poles, enriched with F-actin and myosin VIII, and active in endocytic recycling of both PIN transporters and cell wall pectins cross-linked with calcium and boron, act as the gravisensing domains, and that these impinge directly upon the root motoric responses via control of polar auxin transport. This model suggests that mechanical asymmetry at these plant synapses determines vectorial gravity-controlled auxin transport. Due to the gravity-imposed mechanical load upon the protoplast, a tensional stress is also imposed upon the plasma membrane of the physically lower synaptic cell pole. This stress is then relieved by shifting the endocytosis-exocytosis balance towards exocytosis (Balǔka et al. s 2005, 2009a,b). This `Synaptic Auxin Secretion' hypothesis does not conflict with the `Starch Statolith' hypothesis, which is based on amyloplast sedimentation. In fact, the `Synaptic Auxin Secretion' hypothesis has many elements which allow its unification with the Starch-Statolith model (Balǔka et al. 2005, 2009a,b). s References Balǔka F, Volkmann D, Menzel D (2005) Plant synapses: actin-based adhesion s domains for cell-to-cell communication. Trends Plant Sci 10: 106-111 Balǔka F, Schlicht M, s Wan Y-L, Burbach C, Volkmann D (2009a) Intracellular domains and polarity in root apices: from synaptic domains to plant neurobiology. Nova Acta Leopoldina 96: 103-122 Balǔka s F, Mancuso S

  12. The Evolution of Root Zone Storage Capacity after Land Use Change

    NASA Astrophysics Data System (ADS)

    Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Wagener, Thorsten; Savenije, Hubert H. G.; Hrachowitz, Markus

    2016-04-01

    Root zone storage capacity forms a crucial parameter in ecosystem functioning as it is the key parameter that determines the partitioning between runoff and transpiration. There is increasing evidence from several case studies for specific plants that vegetation adapts to the critical situation of droughts. For example, trees will, on the long term, try to improve their internal hydraulic conductivity after droughts, for example by allocating more biomass for roots. In spite of this understanding, the water storage capacity in the root zone is often treated as constant in hydrological models. In this study, it was hypothesized that root zone storage capacities are altered by deforestation and the regrowth of the ecosystem. Three deforested sub catchments as well as not affected, nearby control catchments of the experimental forests of HJ Andrews and Hubbard Brook were selected for this purpose. Root zone storage capacities were on the one hand estimated by a climate-based approach similar to Gao et al. (2014), making use of simple water balance considerations to determine the evaporative demand of the system. In this way, the maximum deficit between evaporative demand and precipitation allows a robust estimation of the root zone storage capacity. On the other hand, three conceptual hydrological models (FLEX, HYPE, HYMOD) were calibrated in a moving window approach for all catchments. The obtained model parameter values representing the root zone storage capacities of the individual catchments for each moving window period were then compared to the estimates derived from climate data for the same periods. Model- and climate-derived estimates of root zone storage capacities both showed a similar evolution. In the deforested catchments, considerable reductions of the root zone storage capacities, compared to the pre-treatment situation and control catchments, were observed. In addition, the years after forest clearing were characterized by a gradual recovery of the

  13. A higher sink competitiveness of the rooting zone and invertases are involved in dark stimulation of adventitious root formation in Petunia hybrida cuttings.

    PubMed

    Klopotek, Yvonne; Franken, Philipp; Klaering, Hans-Peter; Fischer, Kerstin; Hause, Bettina; Hajirezaei, Mohammad-Reza; Druege, Uwe

    2016-02-01

    The contribution of carbon assimilation and allocation and of invertases to the stimulation of adventitious root formation in response to a dark pre-exposure of petunia cuttings was investigated, considering the rooting zone (stem base) and the shoot apex as competing sinks. Dark exposure had no effect on photosynthesis and dark respiration during the subsequent light period, but promoted dry matter partitioning to the roots. Under darkness, higher activities of cytosolic and vacuolar invertases were maintained in both tissues when compared to cuttings under light. This was partially associated with higher RNA levels of respective genes. However, activity of cell wall invertases and transcript levels of one cell wall invertase isogene increased specifically in the stem base during the first two days after cutting excision under both light and darkness. During five days after excision, RNA accumulation of four invertase genes indicated preferential expression in the stem base compared to the apex. Darkness shifted the balance of expression of one cytosolic and two vacuolar invertase genes towards the stem base. The results indicate that dark exposure before planting enhances the carbon sink competitiveness of the rooting zone and that expression and activity of invertases contribute to the shift in carbon allocation.

  14. Cadmium re-distribution from pod and root zones and accumulation by peanut (Arachis hypogaea L.).

    PubMed

    Wang, Kairong; Song, Ningning; Zhao, Qiaoqiao; van der Zee, S E A T M

    2016-01-01

    Peanut (Arachis hypogaea L.) genotypes may differ greatly with regard to cadmium (Cd) accumulation, but the underlying mechanisms remain unclear. To determine the key factors that may contribute to Cd re-distribution and accumulation in peanut genotypes with different Cd accumulating patterns, a split-pot soil experiment was conducted with three common Chinese peanut cultivars (Fenghua-6, Huayu-20, and Huayu-23). The growth medium was separated into pod and root zones with varied Cd concentrations in each zone to determine the re-distribution of Cd after it is taken up via different routes. The peanut cultivars were divided into two groups based on Cd translocation efficiency as follows: (1) high internal Cd translocation efficiency cultivar (Fenghua-6) and (2) low internal Cd translocation efficiency cultivars (Huayu-20 and Huayu-23). Compared with Fenghua-6, low Cd translocation cultivars Huayu-20 and Huayu-23 showed higher biomass production, especially in stems and leaves, leading to dilution of metal concentrations. Results also showed that Cd concentration in roots increased significantly with increasing Cd concentrations in soils when Cd was applied in the root zone. However, there were no significant differences in the root Cd concentrations between different pod zone Cd treatments and the control, suggesting that root uptake, rather than pod uptake, is responsible for Cd accumulation in the roots of peanuts. Significant differences of Cd distribution were observed between pod and root zone Cd exposure treatments. The three peanut cultivars revealed higher kernel over total Cd fractions for pod than for root zone Cd exposure if only extra applied Cd was considered. This suggests that uptake through peg and pod shell might, at least partially, be responsible for the variation in Cd re-distribution and accumulation among peanut cultivars. Cd uptake by plants via two routes (i.e., via roots and via pegs and pods, respectively) and internal Cd translocation

  15. Distribution of Calcium Ions in Cells of the Root Distal Elongation Zone Under Clinorotation

    NASA Astrophysics Data System (ADS)

    Sobol, Margarita; Kordyum, Elizabeth

    2009-01-01

    Currently, calcium ions are known to play a crucial role in the vital activity of plant cells and in stimulus-response coupling for many environmental signals, altered gravity included. The available data on changes in Ca2 + distribution and concentration in the cells of different organisms influenced by altered gravity allow to suggest that microgravity affects the calcium messenger system, and provide new insight for the understanding of calcium-and gravity-dependent cellular processes. We have studied with confocal microscopy the distribution and relative content of calcium ions in the Beta vulgaris root distal elongation zone cells grown under slow horizontal clinorotation, reproducing one of the microgravity particularities, namely the absence of an orienting action of the gravity vector, compared to control conditions. We demonstrate that Ca2 + relative content is 1.3 times higher in the roots of seedlings grown upwards and 1.2 times higher in the seedlings grown downwards compared to the control. Based on obtained data, taking into account the specific physiological properties of cells in the distal elongation zone, it is supposed that, under clinorotation, enhanced Ca2 + relative content affects Ca2 + -dependent cytoskeleton reorganization involved in cell gravisensing in altered gravity.

  16. Influence of Topography on Root Processes in the Shale Hills-Susquehanna Critical Zone Observatory

    NASA Astrophysics Data System (ADS)

    Eissenstat, D. M.; Orr, A. S.; Adams, T. S.; Chen, W.; Gaines, K.

    2015-12-01

    Topography can strongly influence root and associated mycorrhizal fungal function in the Critical Zone. In the Shale Hills-Susquehanna Critical Zone Observatory (SSCZO), soil depths range from more than 80 cm deep in the valley floor to about 25 cm on the ridge top. Tree height varies from about 28 m tall at the valley floor to about 17 m tall at the ridge top. Yet total absorptive root length to depth of refusal is quite similar across the hillslope. We find root length density to vary as much at locations only 1-2 m apart as at scales of hundreds of meters across the catchment. Tree community composition also varies along the hillslope, including tree species that vary widely in thickness of their absorptive roots and type of mycorrhiza (arbuscular mycorrhizal and ectomycorrhizal). Studies of trees in a common garden of 16 tree species and in forests near SSCZO indicate that both root morphology and mycorrhizal type can strongly influence root foraging. Species that form thick absorptive roots appear more dependent on mycorrhizal fungi and thin-root species forage more by root proliferation. Ectomycorrhizal trees show more variation in foraging precision (proliferation in a nutrient-rich patch relative to that in an unenriched patch) of their mycorrhizal hyphae whereas AM trees show more variation in foraging precision by root proliferation, indicating alternative strategies among trees of different mycorrhizal types. Collectively, the results provide insight into how topography can influence foraging belowground.

  17. [Dynamic variations of soil moisture in Haloxylon ammodendron root zone in Gurbantunggut Desert].

    PubMed

    Yang, Yan-feng; Zhou, Hong-fei; Xu, Li-gang

    2011-07-01

    To understand the dynamic variations of soil moisture in the root zone of original Haloxylon ammodendron land is of significance for further understanding the interactions between hydrological processes and vegetations in the Gurbantunggut Desert. By using TDR probes system, this paper measured the volumetric soil moisture content in H. ammodendron land in the southern edge of Gurbantunggut Desert, and analyzed the spatiotemporal distribution of soil moisture in the root zone of H. ammodendron in August 2007-July 2008. There existed 'wet island' effect in H. ammodendron root zone. The 0-60 cm soil water storage in the root zone was 1.49 times of that in bare land. Such a difference was greater in summer than in spring and after rainfall than before rainfall. The soil moisture content in the Desert was the richest in spring after snow melting and the lowest in winter, and its annual variation could be divided into three periods, i.e., quick supplement-consumption period in spring (from March to May), slow consumption period in summer and autumn (from June to September), and stable period in winter (form October to next February). Based on wavelet analysis, the soil moisture variation in H. ammodendron root zone and bare land had a short cycle of 43 and 40 days and a long cycle of 110 and 103 days, respectively. The relatively rich soil moisture content in H. ammodendron root zone could be mainly due to the stem flow water collection, tree canopy shading, and the better water percolating capacity in root zone.

  18. Estimating field scale root zone soil moisture using the cosmic-ray neutron probe

    NASA Astrophysics Data System (ADS)

    Peterson, A. M.; Helgason, W. D.; Ireson, A. M.

    2015-12-01

    Many practical hydrological, meteorological and agricultural management problems require estimates of soil moisture with an areal footprint equivalent to "field scale", integrated over the entire root zone. The cosmic-ray neutron probe is a promising instrument to provide field scale areal coverage, but these observations are shallow and require depth scaling in order to be considered representative of the entire root zone. A study to identify appropriate depth-scaling techniques was conducted at a grazing pasture site in central Saskatchewan, Canada over a two year period. Area-averaged soil moisture was assessed using a cosmic-ray neutron probe. Root zone soil moisture was measured at 21 locations within the 5002 m2 area, using a down-hole neutron probe. The cosmic-ray neutron probe was found to provide accurate estimates of field scale surface soil moisture, but accounted for less than 40 % of the seasonal change in root zone storage due to its shallow measurement depth. The root zone estimation methods evaluated were: (1) the coupling of the cosmic-ray neutron probe with a time stable neutron probe monitoring location, (2) coupling the cosmic-ray neutron probe with a representative landscape unit monitoring approach, and (3) convolution of the cosmic-ray neutron probe measurements with the exponential filter. The time stability method provided the best estimate of root zone soil moisture (RMSE = 0.004 cm3 cm-3), followed by the exponential filter (RMSE = 0.012 cm3 cm-3). The landscape unit approach, which required no calibration, had a negative bias but estimated the cumulative change in storage reasonably. The feasibility of applying these methods to field sites without existing instrumentation is discussed. It is concluded that the exponential filter method has the most potential for estimating root zone soil moisture from cosmic-ray neutron probe data.

  19. Estimating field-scale root zone soil moisture using the cosmic-ray neutron probe

    NASA Astrophysics Data System (ADS)

    Peterson, Amber M.; Helgason, Warren D.; Ireson, Andrew M.

    2016-04-01

    Many practical hydrological, meteorological, and agricultural management problems require estimates of soil moisture with an areal footprint equivalent to field scale, integrated over the entire root zone. The cosmic-ray neutron probe is a promising instrument to provide field-scale areal coverage, but these observations are shallow and require depth-scaling in order to be considered representative of the entire root zone. A study to identify appropriate depth-scaling techniques was conducted at a grazing pasture site in central Saskatchewan, Canada over a 2-year period. Area-averaged soil moisture was assessed using a cosmic-ray neutron probe. Root zone soil moisture was measured at 21 locations within the 500 m × 500 m study area, using a down-hole neutron probe. The cosmic-ray neutron probe was found to provide accurate estimates of field-scale surface soil moisture, but measurements represented less than 40 % of the seasonal change in root zone storage due to its shallow measurement depth. The root zone estimation methods evaluated were: (a) the coupling of the cosmic-ray neutron probe with a time-stable neutron probe monitoring location, (b) coupling the cosmic-ray neutron probe with a representative landscape unit monitoring approach, and (c) convolution of the cosmic-ray neutron probe measurements with the exponential filter. The time stability method provided the best estimate of root zone soil moisture (RMSE = 0.005 cm3 cm-3), followed by the exponential filter (RMSE = 0.014 cm3 cm-3). The landscape unit approach, which required no calibration, had a negative bias but estimated the cumulative change in storage reasonably. The feasibility of applying these methods to field sites without existing instrumentation is discussed. Based upon its observed performance and its minimal data requirements, it is concluded that the exponential filter method has the most potential for estimating root zone soil moisture from cosmic-ray neutron probe data.

  20. The Regulation of Growth in the Distal Elongation Zone of Maize Roots

    NASA Technical Reports Server (NTRS)

    Evans, Michael L.

    1998-01-01

    The major goals of the proposed research were 1. To develop specialized software for automated whole surface root expansion analysis and to develop technology for controlled placement of surface electrodes for analysis of relationships between root growth and root pH and electrophysiological properties. 2. To measure surface pH patterns and determine the possible role of proton flux in gravitropic sensing or response, and 3. To determine the role of auxin transport in establishment of patterns of proton flux and electrical gradients during the gravitropic response of roots with special emphasis on the role of the distal elongation zone in the early phases of the gravitropic response.

  1. Intracerebroventricular administration of nerve growth factor induces gliogenesis in sensory ganglia, dorsal root, and within the dorsal root entry zone.

    PubMed

    Schlachetzki, Johannes C M; Pizzo, Donald P; Morrissette, Debbi A; Winkler, Jürgen

    2014-01-01

    Previous studies indicated that intracerebroventricular administration of nerve growth factor (NGF) leads to massive Schwann cell hyperplasia surrounding the medulla oblongata and spinal cord. This study was designed to characterize the proliferation of peripheral glial cells, that is, Schwann and satellite cells, in the trigeminal ganglia and dorsal root ganglia (DRG) of adult rats during two weeks of NGF infusion using bromodeoxyuridine (BrdU) to label dividing cells. The trigeminal ganglia as well as the cervical and lumbar DRG were analyzed. Along the entire neuraxis a small number of dividing cells were observed within these regions under physiological condition. NGF infusion has dramatically increased the generation of new cells in the neuronal soma and axonal compartments of sensory ganglia and along the dorsal root and the dorsal root entry zone. Quantification of BrdU positive cells within sensory ganglia revealed a 2.3- to 3-fold increase in glial cells compared to controls with a similar response to NGF for the different peripheral ganglia examined. Immunofluorescent labeling with S100β revealed that Schwann and satellite cells underwent mitosis after NGF administration. These data indicate that intracerebroventricular NGF infusion significantly induces gliogenesis in trigeminal ganglia and the spinal sensory ganglia and along the dorsal root entry zone as well as the dorsal root.

  2. Effects of root-zone acidity on utilization of nitrate and ammonium in tobacco plants

    NASA Technical Reports Server (NTRS)

    Henry, L. T.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

    1989-01-01

    Tobacco (Nicotiana tabacum L., cv. 'Coker 319') plants were grown for 28 days in flowing nutrient culture containing either 1.0 mM NO3- or 1.0 mM NH4+ as the nitrogen source in a complete nutrient solution. Acidities of the solutions were controlled at pH 6.0 or 4.0 for each nitrogen source. Plants were sampled at intervals of 6 to 8 days for determination of dry matter and nitrogen accumulation. Specific rates of NO3- or NH4+ uptake (rate of uptake per unit root mass) were calculated from these data. Net photosynthetic rates per unit leaf area were measured on attached leaves by infrared gas analysis. When NO3- [correction of NO-] was the sole nitrogen source, root growth and nitrogen uptake rate were unaffected by pH of the solution, and photosynthetic activity of leaves and accumulation of dry matter and nitrogen in the whole plant were similar. When NH4+ was the nitrogen source, photosynthetic rate of leaves and accumulation of dry matter and nitrogen in the whole plant were not statistically different from NO3(-) -fed plants when acidity of the solution was controlled at pH 6.0. When acidity for NH4(+) -fed plants was increased to pH 4.0, however, specific rate of NH4+ uptake decreased by about 50% within the first 6 days of treatment. The effect of acidity on root function was associated with a decreased rate of accumulation of nitrogen in shoots that was accompanied by a rapid cessation of leaf development between days 6 and 13. The decline in leaf growth rate of NH4(+) -fed plants at pH 4.0 was followed by reductions in photosynthetic rate per unit leaf area. These responses of NH4(+) -fed plants to increased root-zone acidity are characteristic of the sequence of responses that occur during onset of nitrogen stress.

  3. [Simulation of soil water dynamics in triploid Populus tomentosa root zone under subsurface drip irrigation].

    PubMed

    Xi, Ben-Ye; Jia, Li-Ming; Wang, Ye; Li, Guang-De

    2011-01-01

    Based on the observed data of triploid Populus tomentosa root distribution, a one-dimensional root water uptake model was proposed. Taking the root water uptake into account, the soil water dynamics in triploid P. tomentosa root zone under subsurface drip irrigation was simulated by using HYDRUS model, and the results were validated with field experiment. Besides, the HYDRUS model was used to study the effects of various irrigation technique parameters on soil wetting patterns. The RMAE for the simulated soil water content by the end of irrigation and approximately 24 h later was 7.8% and 6.0%, and the RMSE was 0.036 and 0.026 cm3 x cm(-3), respectively, illustrating that the HYDRUS model performed well in simulating the short-term soil water dynamics in triploid P. tomentosa root zone under drip irrigation, and the root water uptake model was reasonable. Comparing with 2 and 4 L x h(-1) of drip discharge and continuous irrigation, both the 1 L x h(-1) of drip discharge and the pulsed irrigation with water applied intermittently in 30 min periods could increase the volume of wetted soil and reduce deep percolation. It was concluded that the combination of 1 L x h(-1) of drip discharge and pulsed irrigation should be the first choice when applying drip irrigation to triploid P. tomentosa root zone at the experiment site.

  4. The SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) Product

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf; Crow, Wade; Koster, Randal; Kimball, John

    2010-01-01

    The Soil Moisture Active and Passive (SMAP) mission is being developed by NASA for launch in 2013 as one of four first-tier missions recommended by the U.S. National Research Council Committee on Earth Science and Applications from Space in 2007. The primary science objectives of SMAP are to enhance understanding of land surface controls on the water, energy and carbon cycles, and to determine their linkages. Moreover, the high resolution soil moisture mapping provided by SMAP has practical applications in weather and seasonal climate prediction, agriculture, human health, drought and flood decision support. In this paper we describe the assimilation of SMAP observations for the generation of the planned SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) product. The SMAP mission makes simultaneous active (radar) and passive (radiometer) measurements in the 1.26-1.43 GHz range (L-band) from a sun-synchronous low-earth orbit. Measurements will be obtained across a 1000 km wide swath using conical scanning at a constant incidence angle (40 deg). The radar resolution varies from 1-3 km over the outer 70% of the swath to about 30 km near the center of the swath. The radiometer resolution is 40 km across the entire swath. The radiometer measurements will allow high-accuracy but coarse resolution (40 km) measurements. The radar measurements will add significantly higher resolution information. The radar is however very sensitive to surface roughness and vegetation structure. The combination of the two measurements allows optimal blending of the advantages of each instrument. SMAP directly observes only surface soil moisture (in the top 5 cm of the soil column). Several of the key applications targeted by SMAP, however, require knowledge of root zone soil moisture (approximately top 1 m of the soil column), which is not directly measured by SMAP. The foremost objective of the SMAP L4_SM product is to fill this gap and provide estimates of root zone soil moisture

  5. Root-zone temperature influences the distribution of Cu and Zn in potato-plant organs.

    PubMed

    Baghour, Mourad; Moreno, Diego A; Víllora, Gemma; López-Cantarero, Inmaculada; Hernández, Joaquín; Castilla, Nicolas; Romero, Luis

    2002-01-02

    Root-zone temperatures (RZT) in relation to Cu and Zn uptake and tissue accumulation, and to total biomass, in potato plants (Solanum tuberosum L. var. Spunta) were studied. Using five different plastic mulches (no cover, transparent polyethylene, white polyethylene, coextruded white-black polyethylene, and black polyethylene) resulted in significantly different RZT (16, 20, 23, 27, and 30 degrees C, respectively). These RZT significantly influenced Cu and Zn content (concentrated) and the biomass in various potato organs. Root-zone temperature at 20 degrees C resulted in significantly high Cu content in leaflets, and soluble Cu content in leaflets and stems, whereas 23 and 27 degrees C resulted in significantly high Cu content in roots. However, RZT had no effect on Cu content in tubers or stems or on soluble Cu in roots or tubers. The RZT at 20 degrees C resulted in significantly high Zn and soluble Zn in stems, roots, and tubers; whereas, at 27 degrees C Zn and soluble Zn content were significantly highest in leaflets. The most biomass occurred in roots and tubers at 27 degrees C; whereas in leaves and stems, the RZT influence was highly variable. Total accumulation of both Cu forms was affected by RZT at 20 degrees C, with roots and tubers having significantly the least Cu and stems and leaflets having the most. Total accumulation of both Zn forms by RZT in potato organs was highly variable, but tubers consistently accumulated the most.

  6. Organelle sedimentation in gravitropic roots of Limnobium is restricted to the elongation zone

    NASA Technical Reports Server (NTRS)

    Sack, F. D.; Kim, D.; Stein, B.

    1994-01-01

    Roots of the aquatic angiosperm Limnobium spongia (Bosc) Steud. were evaluated by light and electron microscopy to determine the distribution of organelle sedimentation towards gravity. Roots of Limnobium are strongly gravitropic. The rootcap consists of only two layers of cells. Although small amyloplasts are present in the central cap cells, no sedimentation of any organelle, including amyloplasts, was found. In contrast, both amyloplasts and nuclei sediment consistently and completely in cells of the elongation zone. Sedimentation occurs in one cell layer of the cortex just outside the endodermis. Sedimentation of both amyloplasts and nuclei begins in cells that are in their initial stages of elongation and persists at least to the level of the root where root hairs emerge. This is the first modern report of the presence of sedimentation away from, but not in, the rootcap. It shows that sedimentation in the rootcap is not necessary for gravitropic sensing in at least one angiosperm. If amyloplast sedimentation is responsible for gravitropic sensing, then the site of sensing in Limnobium roots is the elongation zone and not the rootcap. These data do not necessarily conflict with the hypothesis that sensing occurs in the cap in other roots, since Limnobium roots are exceptional in rootcap origin and structure, as well as in the distribution of organelle sedimentation. Similarly, if nuclear sedimentation is involved in gravitropic sensing, then nuclear mass would function in addition to, not instead of, that of amyloplasts.

  7. Mapping of Membrane Lipid Order in Root Apex Zones of Arabidopsis thaliana

    PubMed Central

    Zhao, Xiaoyu; Zhang, Xiran; Qu, Yanli; Li, Ruili; Baluška, František; Wan, Yinglang

    2015-01-01

    In this study, we used the fluorescence probe, Di-4-ANEPPDHQ, to map the distribution of membrane lipid order in the apical region of Arabidopsis roots. The generalized polarization (GP) value of Di-4-ANEPPDHQ-stained roots indicated the highest lipid order in the root transition zone (RTZ). The cortical cells have higher lipid order than the epidermal cells in same regions, while the developing root hairs show very prominent cell polarity with high lipid order in apical region. Moreover, the endosomes had lower lipid order than that of the plasma membrane (PM). Brefeldin A (BFA) treatment decreased the lipid order in both the plasma and endosomal membranes of epidermal cells in the RTZ. The lipid order of BFA-induced compartments became higher than that of the PM after BFA treatment in epidermal cells. Meanwhile, the polarly growing tips of root hairs did not show the same behavior. The lipid order of the PM remained unchanged, with higher values than that of the endosomes. This suggests that the lipid ordering in the PM was affected by recycling of endosomal vesicles in epidermal cells of the root apex transition zone but not in the root hairs of Arabidopsis. PMID:26734047

  8. Root-zone soil moisture estimation from assimilation of downscaled Soil Moisture and Ocean Salinity data

    NASA Astrophysics Data System (ADS)

    Dumedah, Gift; Walker, Jeffrey P.; Merlin, Olivier

    2015-10-01

    The crucial role of root-zone soil moisture is widely recognized in land-atmosphere interaction, with direct practical use in hydrology, agriculture and meteorology. But it is difficult to estimate the root-zone soil moisture accurately because of its space-time variability and its nonlinear relationship with surface soil moisture. Typically, direct satellite observations at the surface are extended to estimate the root-zone soil moisture through data assimilation. But the results suffer from low spatial resolution of the satellite observation. While advances have been made recently to downscale the satellite soil moisture from Soil Moisture and Ocean Salinity (SMOS) mission using methods such as the Disaggregation based on Physical And Theoretical scale Change (DisPATCh), the assimilation of such data into high spatial resolution land surface models has not been examined to estimate the root-zone soil moisture. Consequently, this study assimilates the 1-km DisPATCh surface soil moisture into the Joint UK Land Environment Simulator (JULES) to better estimate the root-zone soil moisture. The assimilation is demonstrated using the advanced Evolutionary Data Assimilation (EDA) procedure for the Yanco area in south eastern Australia. When evaluated using in-situ OzNet soil moisture, the open loop was found to be 95% as accurate as the updated output, with the updated estimate improving the DisPATCh data by 14%, all based on the root mean square error (RMSE). Evaluation of the root-zone soil moisture with in-situ OzNet data found the updated output to improve the open loop estimate by 34% for the 0-30 cm soil depth, 59% for the 30-60 cm soil depth, and 63% for the 60-90 cm soil depth, based on RMSE. The increased performance of the updated output over the open loop estimate is associated with (i) consistent estimation accuracy across the three soil depths for the updated output, and (ii) the deterioration of the open loop output for deeper soil depths. Thus, the

  9. Antihistaminic activity of Clitoria ternatea L. roots.

    PubMed

    Taur, Dnyaneshwar J; Patil, Ravindra Y

    2010-12-01

    Clonidine, a α2 adrenoreceptor agonist induces dose dependent catalepsy in mice, which was inhibited by histamine H1 receptor antagonists but not by H2 receptor antagonist. Clonidine releases histamine from mast cells which is responsible for different asthmatic conditions. Clitoria ternatea L. (Family: Fabaceae) is a perimial twing herb. The roots have anti-inflammatory properties and are useful in severe bronchitis, asthma. In present study ethanol extract of Clitoria ternatea root (ECTR) at doses 100, 125 and 150 mg/kg i.p were evaluated for antihistaminic activity using clonidine and haloperidol induced catalepsy in mice. Finding of investigation showed that chlorpheniramine maleate (CPM) and ECTR inhibit clonidine induced catalepsy significantly P < 0.001 when compare to control group, while CPM and ECTR fail to inhibit haloperidol induced catalepsy. Present study concludes that ECTR possesses antihistaminic activity.

  10. Root Zone Cooling and Exogenous Spermidine Root-Pretreatment Promoting Lactuca sativa L. Growth and Photosynthesis in the High-temperature Season.

    PubMed

    Sun, Jin; Lu, Na; Xu, Hongjia; Maruo, Toru; Guo, Shirong

    2016-01-01

    Root zone high-temperature stress is a major factor limiting hydroponic plant growth during the high-temperature season. The effects of root zone cooling (RZC; at 25°C) and exogenous spermidine (Spd) root-pretreatment (SRP, 0.1 mM) on growth, leaf photosynthetic traits, and chlorophyll fluorescence characteristics of hydroponic Lactuca sativa L. grown in a high-temperature season (average temperature > 30°C) were examined. Both treatments significantly promoted plant growth and photosynthesis in the high-temperature season, but the mechanisms of photosynthesis improvement in the hydroponic grown lettuce plants were different between the RZC and SRP treatments. The former improved plant photosynthesis by increasing stoma conductance (G s) to enhance CO2 supply, thus promoting photosynthetic electron transport activity and phosphorylation, which improved the level of the photochemical efficiency of photosystem II (PSII), rather than enhancing CO2 assimilation efficiency. The latter improved plant photosynthesis by enhancing CO2 assimilation efficiency, rather than stomatal regulation. Combination of RZC and SRP significantly improved P N of lettuce plants in a high-temperature season by both improvement of G s to enhance CO2 supply and enhancement of CO2 assimilation. The enhancement of photosynthetic efficiency in both treatments was independent of altering light-harvesting or excessive energy dissipation.

  11. Root Zone Cooling and Exogenous Spermidine Root-Pretreatment Promoting Lactuca sativa L. Growth and Photosynthesis in the High-temperature Season

    PubMed Central

    Sun, Jin; Lu, Na; Xu, Hongjia; Maruo, Toru; Guo, Shirong

    2016-01-01

    Root zone high-temperature stress is a major factor limiting hydroponic plant growth during the high-temperature season. The effects of root zone cooling (RZC; at 25°C) and exogenous spermidine (Spd) root-pretreatment (SRP, 0.1 mM) on growth, leaf photosynthetic traits, and chlorophyll fluorescence characteristics of hydroponic Lactuca sativa L. grown in a high-temperature season (average temperature > 30°C) were examined. Both treatments significantly promoted plant growth and photosynthesis in the high-temperature season, but the mechanisms of photosynthesis improvement in the hydroponic grown lettuce plants were different between the RZC and SRP treatments. The former improved plant photosynthesis by increasing stoma conductance (Gs) to enhance CO2 supply, thus promoting photosynthetic electron transport activity and phosphorylation, which improved the level of the photochemical efficiency of photosystem II (PSII), rather than enhancing CO2 assimilation efficiency. The latter improved plant photosynthesis by enhancing CO2 assimilation efficiency, rather than stomatal regulation. Combination of RZC and SRP significantly improved PN of lettuce plants in a high-temperature season by both improvement of Gs to enhance CO2 supply and enhancement of CO2 assimilation. The enhancement of photosynthetic efficiency in both treatments was independent of altering light-harvesting or excessive energy dissipation. PMID:27047532

  12. Growth in Turface® clay permits root hair phenotyping along the entire crown root in cereal crops and demonstrates that root hair growth can extend well beyond the root hair zone.

    PubMed

    Goron, Travis L; Watts, Sophia; Shearer, Charles; Raizada, Manish N

    2015-04-12

    In cereal crops, root hairs are reported to function within the root hair zone to carry out important roles in nutrient and water absorption. Nevertheless, these single cells remain understudied due to the practical challenges of phenotyping these delicate structures in large cereal crops growing on soil or other growth systems. Here we present an alternative growth system for examining the root hairs of cereal crops: the use of coarse Turface® clay alongside fertigation. This system allowed for root hairs to be easily visualized along the entire lengths of crown roots in three different cereal crops (maize, wheat, and finger millet). Surprisingly, we observed that the root hairs in these crops continued to grow beyond the canonical root hair zone, with the most root hair growth occurring on older crown root segments. We suggest that the Turface® fertigation system may permit a better understanding of the changing dynamics of root hairs as they age in large plants, and may facilitate new avenues for crop improvement below ground. However, the relevance of this system to field conditions must be further evaluated in other crops.

  13. Creeping bentgrass growth in sand-based root zones with or without biochar

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Organic amendments such as peat moss and various composts are typically added to sand-based root zones to increase water and nutrient retention. However, these attributes are typically lost within a few years as these amendments decompose. Biochar is a high carbon, porous coproduct from the pyrolysi...

  14. Benchmarking LSM root-zone soil mositure predictions using satellite-based vegetation indices

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The application of modern land surface models (LSMs) to agricultural drought monitoring is based on the premise that anomalies in LSM root-zone soil moisture estimates can accurately anticipate the subsequent impact of drought on vegetation productivity and health. In addition, the water and energy ...

  15. Evaluation of a root zone TDR sensor for soil water content measurement

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Time domain reflectometry (TDR) is a well-established dielectric technique of measuring the soil volumetric water content (VWC). However, it is expensive and difficult to determine the depth-averaged VWC in the root zone using conventional TDR probes. The objectives of this study are to develop a lo...

  16. Corn stover harvest increases herbicide movement to subsurface drains – Root Zone Water Quality Model simulations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    BACKGROUND: Removal of crop residues for bioenergy production can alter soil hydrologic properties, but there is little information on its impact on transport of herbicides and their degradation products to subsurface drains. The Root Zone Water Quality Model, previously calibrated using measured fl...

  17. Constraining root-zone soil water availability using data assimilation and satellite remote sensing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Large-scale monitoring of root-zone soil water availability, and therefore the duration and extent of regional agricultural drought, has emerged as an important application for satellite remote sensing and figures heavily into plans for next-generation earth observing satellites. At present, three ...

  18. Application of Data Assimilation with the Root Zone Water Quality Model for Soil Moisture Profile Estimation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Ensemble Kalman Filter (EnKF), a popular data assimilation technique for non-linear systems was applied to the Root Zone Water Quality Model. Measured soil moisture data at four different depths (5cm, 20cm, 40cm and 60cm) from two agricultural fields (AS1 and AS2) in northeastern Indiana were us...

  19. Climate controls how ecosystems size the root zone storage capacity at catchment scale

    NASA Astrophysics Data System (ADS)

    Gao, H.; Hrachowitz, M.; Schymanski, S. J.; Fenicia, F.; Sriwongsitanon, N.; Savenije, H. H. G.

    2014-11-01

    The root zone moisture storage capacity (SR) of terrestrial ecosystems is a buffer providing vegetation continuous access to water and a critical factor controlling land-atmospheric moisture exchange, hydrological response, and biogeochemical processes. However, it is impossible to observe directly at catchment scale. Here, using data from 300 diverse catchments, it was tested that, treating the root zone as a reservoir, the mass curve technique (MCT), an engineering method for reservoir design, can be used to estimate catchment-scale SR from effective rainfall and plant transpiration. Supporting the initial hypothesis, it was found that MCT-derived SR coincided with model-derived estimates. These estimates of parameter SR can be used to constrain hydrological, climate, and land surface models. Further, the study provides evidence that ecosystems dynamically design their root systems to bridge droughts with return periods of 10-40 years, controlled by climate and linked to aridity index, inter-storm duration, seasonality, and runoff ratio.

  20. The maturation zone is an important target of Piriformospora indica in Chinese cabbage roots

    PubMed Central

    Dong, Sheqin; Tian, Zhihong; Oelmüllar, Ralf; Yeh, Kai Wun

    2013-01-01

    The mutualistic symbiont Piriformospora indica exhibits a great potential in agriculture. The interaction between P. indica and Chinese cabbage (Brassica campestris cv. Chinensis) results in growth and biomass promotion of the host plant and in particular in root hair development. The resulting highly bushy root phenotype of colonized Chinese cabbage seedlings differs substantially from reports of other plant species, which prompted the more detailed study of this symbiosis. A large-scale expressed sequence tag (EST) data set was obtained from a double-subtractive EST library, by subtracting the cDNAs of Chinese cabbage root tissue and of P. indica mycelium from those of P. indica-colonized root tissue. The analysis revealed ~700 unique genes rooted in 141 clusters and 559 singles. A total of 66% of the sequences could be annotated in the NCBI GenBank. Genes which are stimulated by P. indica are involved in various types of transport, carbohydrate metabolism, auxin signalling, cell wall metabolism, and root development, including the root hair-forming phosphoinositide phosphatase 4. For 20 key genes, induction by fungal colonization was confirmed kinetically during the interaction by real-time reverse transcription–PCR. Moreover, the auxin concentration increases transiently after exposure of the roots to P. indica. Microscopic analyses demonstrated that the development of the root maturation zone is the major target of P. indica in Chinese cabbage. Taken together, the symbiotic interaction between Chinese cabbage and P. indica is a novel model to study root growth promotion which, in turn, is important for agriculture and plant biotechnology. PMID:24006423

  1. Analysis of changes in relative elemental growth rate patterns in the elongation zone of Arabidopsis roots upon gravistimulation

    NASA Technical Reports Server (NTRS)

    Mullen, J. L.; Ishikawa, H.; Evans, M. L.

    1998-01-01

    Although Arabidopsis is an important system for studying root physiology, the localized growth patterns of its roots have not been well defined, particularly during tropic responses. In order to characterize growth rate profiles along the apex of primary roots of Arabidopsis thaliana (L.) Heynh (ecotype Columbia) we applied small charcoal particles to the root surface and analyzed their displacement during growth using an automated video digitizer system with custom software for tracking the markers. When growing vertically, the maximum elongation rate occurred 481 +/- 50 microns back from the extreme tip of the root (tip of root cap), and the elongation zone extended back to 912 +/- 137 microns. The distal elongation zone (DEZ) has previously been described as the apical region of the elongation zone in which the relative elemental growth rate (REGR) is < or = 30% of the peak rate in the central elongation zone. By this definition, our data indicate that the basal limit of the DEZ was located 248 +/- 30 microns from the root tip. However, after gravistimulation, the growth patterns of the root changed. Within the first hour of graviresponse, the basal limit of the DEZ and the position of peak REGR shifted apically on the upper flank of the root. This was due to a combination of increased growth in the DEZ and growth inhibition in the central elongation zone. On the lower flank, the basal limit of the DEZ shifted basipetally as the REGR decreased. These factors set up the gradient of growth rate across the root, which drives curvature.

  2. Effects of Application Methods and Plastic Covers on Distribution of Cis- and Trans-1,3-Dichloropropene and Chloropicrin in Root Zone

    PubMed Central

    Ou, L.-T.; Thomas, J. E.; Allen, L. H.; McCormack, L. A.; Vu, J. C.; Dickson, D. W.

    2005-01-01

    This study examined the effects of three application methods (chisel injection, Avenger coulter injection, and drip irrigation) and two plastic films (polyethylene film [PE] and virtually impermeable film [VIF]) on distribution of cis- and trans- 1,3-dichloropropene (1,3-D) and chloropicrin (CP) in a Florida sandy soil after application of Telone C35 or Telone In-Line. Regardless of application method, VIF retained greater amounts of cis- and trans-1,3-D and CP in the root zone with longer residential time than PE. There was better retention of the three compounds in the root zone when applied with the Avenger coulter injection rig than chisel injection, especially in combination with VIF. Distribution of the three compounds in the root zone was less predictable when applied by drip irrigation. Following drip irrigation, more than 50% of the three compounds in the PE and VIF-covered beds was found near the end of the drip tapes in one experiment, whereas the distribution was much more uniform in the root zone in a second experiment. Among the three biologically active compounds, CP disappeared from the root zone more rapidly than cis- and trans-1,3-D, especially in the PE-covered beds. PMID:19262895

  3. Combining fluorescence imaging and neutron radiography to simultaneously record dynamics of oxygen and water content in the root zone

    NASA Astrophysics Data System (ADS)

    Rudolph, N.; Oswald, S. E.; Nagl, S.; Kardjilov, N.

    2010-12-01

    There is a growing need in non-destructive techniques able to measure life-controlling parameters such as oxygen and water dynamics in ecosystems. We use neutron radiography coupled with fluorescence imaging to map the dynamics of these two essential biogeochemical parameters in the root-zone of plants. Measuring the real-time distribution of water and oxygen concentration can enable us to better understand where the active parts of the roots are located in respect to uptake and respiration. Roots performance itself is a function of age and local conditions such as water and oxygen availability in soil. It is technically challenging to monitor these dynamics in small distances from the roots without disturbing them. Non-destructive imaging methods such as fluorescence and neutron imaging provide a unique opportunity to unravel some of these complex processes. Boron-free glass containers (inner size 10cm x 10cm x 1cm) were filled with fine sand of different grain sizes. A sensor foil for O2 (Borisov et al. 2006) was installed on one inner-side of the containers. We grew lupine plants in the container for two weeks under controlled conditions. We took neutron radiographs and fluorescence images of the samples for a range of water contents, and therefore a range of root activities and oxygen changes. We observed the consumption of oxygen induced by roots of lupine plants during 36 hours. Neutron radiography gives us the information about root development and water content. Due to the high water content, aeration from atmosphere is limited. By focusing on the initial conditions we observe that the fluorescence intensity increases in the lower and upper part, where roots are located. The respiration activity creates oxygen deficits close to the roots, and we observed a higher activity by the lateral roots than the tap root. Moreover, the oxygen consumption increases with increasing root growth or root age. After 24 hours the images indicates better aeration in the upper

  4. Tubulin cytoskeleton in elongation zone of Arabidopsis root is affected by clinorotation

    NASA Astrophysics Data System (ADS)

    Shevchenko, G.; Kalinina, Ya.; Kordyum, E.

    Our aim is to find out how clinorotation influences root growth For this purpose we followed the dynamics of tubulin cytoskeleton cortical and endoplasmic microtubules in cells from elongation zone of Arabidopsis roots transfected with GFP-MAP4 3 day old seedlings In distal part of elongation zone in epidermal cells mainly distinct endoplasmic microtubules were observed Prominent cortical microtubules start to be evident in cells in central elongation zone Under clinorotation clusters formed by MAP4 appear in all parts of elongation zone evidencing that microtubule arrangement is somehow distorted there Application of cytochalasin D which disrupts proper functioning of actin cytoskeleton in controls affected mainly the endoplasmic microtubules in cells with isotropic growth where MAP4 was clustered Under clinorotation disruption of actin cytoskeleton by cytochalasin D caused appearance of MAP4 clusters in cells growing anisotropically In those cells cortical microtubules are affected as well as endoplasmic Due to the fact that cortical microtubules are responsible for ordered growth of plant cell and are arranged into a robust structure change of their organization under clinorotation could impact cell growth This proves that cells in elongation zone switching their growth mode from isotropic to anisotropic are rather sensitive to altered gravity The fact that more severe distortion of cortical microtubules was noted in cells with damaged actin microfilaments proves mutually related functioning of actin and tubulin cytoskeletons under clinorotation

  5. Comparing the Normalized Difference Infrared Index (NDII) with root zone storage in a lumped conceptual model

    NASA Astrophysics Data System (ADS)

    Sriwongsitanon, Nutchanart; Gao, Hongkai; Savenije, Hubert H. G.; Maekan, Ekkarin; Saengsawang, Sirikanya; Thianpopirug, Sansarith

    2016-08-01

    With remote sensing we can readily observe the Earth's surface, but direct observation of the sub-surface remains a challenge. In hydrology, but also in related disciplines such as agricultural and atmospheric sciences, knowledge of the dynamics of soil moisture in the root zone of vegetation is essential, as this part of the vadose zone is the core component controlling the partitioning of water into evaporative fluxes, drainage, recharge, and runoff. In this paper, we compared the catchment-scale soil moisture content in the root zone of vegetation, computed by a lumped conceptual model, with the remotely sensed Normalized Difference Infrared Index (NDII) in the Upper Ping River basin (UPRB) in northern Thailand. The NDII is widely used to monitor the equivalent water thickness (EWT) of leaves and canopy. Satellite data from the Moderate Resolution Imaging Spectroradiometer (MODIS) were used to determine the NDII over an 8-day period, covering the study area from 2001 to 2013. The results show that NDII values decrease sharply at the end of the wet season in October and reach lowest values near the end of the dry season in March. The values then increase abruptly after rains have started, but vary in an insignificant manner from the middle to the late rainy season. This paper investigates if the NDII can be used as a proxy for moisture deficit and hence for the amount of moisture stored in the root zone of vegetation, which is a crucial component of hydrological models. During periods of moisture stress, the 8-day average NDII values were found to correlate well with the 8-day average soil moisture content (Su) simulated by the lumped conceptual hydrological rainfall-runoff model FLEX for eight sub-catchments in the Upper Ping basin. Even the deseasonalized Su and NDII (after subtracting the dominant seasonal signal) showed good correlation during periods of moisture stress. The results illustrate the potential of the NDII as a proxy for catchment-scale root zone

  6. Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity

    PubMed Central

    Rodrigues, Richard R.; Pineda, Rosana P.; Barney, Jacob N.; Nilsen, Erik T.; Barrett, John E.; Williams, Mark A.

    2015-01-01

    The importance of plant-microbe associations for the invasion of plant species have not been often tested under field conditions. The research sought to determine patterns of change in microbial communities associated with the establishment of invasive plants with different taxonomic and phenetic traits. Three independent locations in Virginia, USA were selected. One site was invaded by a grass (Microstegium vimineum), another by a shrub (Rhamnus davurica), and the third by a tree (Ailanthus altissima). The native vegetation from these sites was used as reference. 16S rRNA and ITS regions were sequenced to study root-zone bacterial and fungal communities, respectively, in invaded and non-invaded samples and analyzed using Quantitative Insights Into Microbial Ecology (QIIME). Though root-zone microbial community structure initially differed across locations, plant invasion shifted communities in similar ways. Indicator species analysis revealed that Operational Taxonomic Units (OTUs) closely related to Proteobacteria, Acidobacteria, Actinobacteria, and Ascomycota increased in abundance due to plant invasions. The Hyphomonadaceae family in the Rhodobacterales order and ammonia-oxidizing Nitrospirae phylum showed greater relative abundance in the invaded root-zone soils. Hyphomicrobiaceae, another bacterial family within the phyla Proteobacteria increased as a result of plant invasion, but the effect associated most strongly with root-zones of M. vimineum and R. davurica. Functional analysis using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) showed bacteria responsible for nitrogen cycling in soil increased in relative abundance in association with plant invasion. In agreement with phylogenetic and functional analyses, greater turnover of ammonium and nitrate was associated with plant invasion. Overall, bacterial and fungal communities changed congruently across plant invaders, and support the hypothesis that nitrogen

  7. Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity.

    PubMed

    Rodrigues, Richard R; Pineda, Rosana P; Barney, Jacob N; Nilsen, Erik T; Barrett, John E; Williams, Mark A

    2015-01-01

    The importance of plant-microbe associations for the invasion of plant species have not been often tested under field conditions. The research sought to determine patterns of change in microbial communities associated with the establishment of invasive plants with different taxonomic and phenetic traits. Three independent locations in Virginia, USA were selected. One site was invaded by a grass (Microstegium vimineum), another by a shrub (Rhamnus davurica), and the third by a tree (Ailanthus altissima). The native vegetation from these sites was used as reference. 16S rRNA and ITS regions were sequenced to study root-zone bacterial and fungal communities, respectively, in invaded and non-invaded samples and analyzed using Quantitative Insights Into Microbial Ecology (QIIME). Though root-zone microbial community structure initially differed across locations, plant invasion shifted communities in similar ways. Indicator species analysis revealed that Operational Taxonomic Units (OTUs) closely related to Proteobacteria, Acidobacteria, Actinobacteria, and Ascomycota increased in abundance due to plant invasions. The Hyphomonadaceae family in the Rhodobacterales order and ammonia-oxidizing Nitrospirae phylum showed greater relative abundance in the invaded root-zone soils. Hyphomicrobiaceae, another bacterial family within the phyla Proteobacteria increased as a result of plant invasion, but the effect associated most strongly with root-zones of M. vimineum and R. davurica. Functional analysis using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) showed bacteria responsible for nitrogen cycling in soil increased in relative abundance in association with plant invasion. In agreement with phylogenetic and functional analyses, greater turnover of ammonium and nitrate was associated with plant invasion. Overall, bacterial and fungal communities changed congruently across plant invaders, and support the hypothesis that nitrogen

  8. Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone.

    PubMed

    Bazihizina, Nadia; Barrett-Lennard, Edward G; Colmer, Timothy D

    2012-11-01

    Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10-450 mM NaCl in the low-salt side and 670 mM in the high-salt side, or 10 mM NaCl in the low-salt side and 500-1500 mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120-230 mM NaCl; ~90% of maximum growth occurred at 10 mM and 450 mM NaCl. Exposure of part of the roots to 1500 mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10-450 mM range.

  9. [Ammonia-oxidizing bacteria community composition at the root zones of aquatic plants after ecological restoration].

    PubMed

    Xing, Peng; Kong, Fan-xiang; Chen, Kai-ning; Chen, Mei-jun; Wu, Xiao-dong

    2008-08-01

    To investigate the effects of aquatic plants on ammonia-oxidizing bacteria (AOB) at their root zones, four species of aquatic plants were selected, Phragmites communis, Typha angustifolia L., Potamogeton crispus L., and Limnanthemun nymphoides, which were widely used in ecological restorations. AOB in the samples were enumerated by most-probable-number (MPN) method. Nested polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) procedures were performed with ammonia oxidizer-selective primers. Main DGGE bands were excised from the gel and sequenced for phylogenetic affiliation. Results indicate that AOB densities are always higher at the root zones of emergent plants (Phragmites communis 2.8 x 10(5) cells/g and Typha angustifolia L.4.3 x 10(5) cells/g) than those of submerged and floating-leaved plant (Potamogeton crispus L. 9.3 x 10(4) cells/g and Limnanthemun nymphoides 7.7 x 10(4) cells/g). At the root zones, the oxidation-reduction potential is above zero and NH4+ concentration is lower than it in the bare surface sediment. Fourteen major bands were recovered from the DGGE gel, re-amplified and sequenced. Although the identified bands have their respective similar sequences in GenBank, most of them are related to Nitrosomonas-like. This type of bacteria would play an important role of nitrogen cycle in lake sediment after ecological restoration.

  10. Presynaptic active zones in invertebrates and vertebrates

    PubMed Central

    Ackermann, Frauke; Waites, Clarissa L; Garner, Craig C

    2015-01-01

    The regulated release of neurotransmitter occurs via the fusion of synaptic vesicles (SVs) at specialized regions of the presynaptic membrane called active zones (AZs). These regions are defined by a cytoskeletal matrix assembled at AZs (CAZ), which functions to direct SVs toward docking and fusion sites and supports their maturation into the readily releasable pool. In addition, CAZ proteins localize voltage-gated Ca2+ channels at SV release sites, bringing the fusion machinery in close proximity to the calcium source. Proteins of the CAZ therefore ensure that vesicle fusion is temporally and spatially organized, allowing for the precise and reliable release of neurotransmitter. Importantly, AZs are highly dynamic structures, supporting presynaptic remodeling, changes in neurotransmitter release efficacy, and thus presynaptic forms of plasticity. In this review, we discuss recent advances in the study of active zones, highlighting how the CAZ molecularly defines sites of neurotransmitter release, endocytic zones, and the integrity of synapses. PMID:26160654

  11. The role of the distal elongation zone in the response of maize roots to auxin and gravity

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1993-01-01

    We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism.

  12. Zonal Changes in Ascorbate and Hydrogen Peroxide Contents, Peroxidase, and Ascorbate-Related Enzyme Activities in Onion Roots1

    PubMed Central

    del Carmen Córdoba-Pedregosa, María; Córdoba, Francisco; Villalba, José Manuel; González-Reyes, José Antonio

    2003-01-01

    Onion (Allium cepa) roots growing hydroponically show differential zonal values for intra- (symplastic) and extra- (apoplastic) cellular ascorbate (ASC) and dehydroascorbate (DHA) contents and for related enzyme activities. In whole roots, ASC and DHA concentrations were higher in root apex and meristem and gradually decreased toward the root base. Guaiacol peroxidase, ASC peroxidase, monodehydroascorbate oxidoreductase, DHA reductase, catalase, and glutathione reductase activities showed differential activity patterns depending on the zone of the root and their apoplastic or symplastic origin. An in vivo staining of peroxidase activity also revealed a specific distribution pattern along the root axis. Using electron microscopy, hydrogen peroxide was found at different locations depending on the root zone but was mainly located in cell walls from epidermal and meristematic cells and in cells undergoing lignification. A balanced control of all of these molecules seems to exist along the root axis and may be directly related to the mechanisms in which the ASC system is involved, as cell division and elongation. The role of ASC on growth and development in relation to its presence at the different zones of the root is discussed. PMID:12586893

  13. The evolution of root-zone moisture capacities after deforestation: a step towards hydrological predictions under change?

    NASA Astrophysics Data System (ADS)

    Nijzink, Remko; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Freer, Jim; Han, Dawei; Wagener, Thorsten; McGuire, Kevin; Savenije, Hubert; Hrachowitz, Markus

    2016-12-01

    The core component of many hydrological systems, the moisture storage capacity available to vegetation, is impossible to observe directly at the catchment scale and is typically treated as a calibration parameter or obtained from a priori available soil characteristics combined with estimates of rooting depth. Often this parameter is considered to remain constant in time. Using long-term data (30-40 years) from three experimental catchments that underwent significant land cover change, we tested the hypotheses that: (1) the root-zone storage capacity significantly changes after deforestation, (2) changes in the root-zone storage capacity can to a large extent explain post-treatment changes to the hydrological regimes and that (3) a time-dynamic formulation of the root-zone storage can improve the performance of a hydrological model.A recently introduced method to estimate catchment-scale root-zone storage capacities based on climate data (i.e. observed rainfall and an estimate of transpiration) was used to reproduce the temporal evolution of root-zone storage capacity under change. Briefly, the maximum deficit that arises from the difference between cumulative daily precipitation and transpiration can be considered as a proxy for root-zone storage capacity. This value was compared to the value obtained from four different conceptual hydrological models that were calibrated for consecutive 2-year windows.It was found that water-balance-derived root-zone storage capacities were similar to the values obtained from calibration of the hydrological models. A sharp decline in root-zone storage capacity was observed after deforestation, followed by a gradual recovery, for two of the three catchments. Trend analysis suggested hydrological recovery periods between 5 and 13 years after deforestation. In a proof-of-concept analysis, one of the hydrological models was adapted to allow dynamically changing root-zone storage capacities, following the observed changes due to

  14. How rice roots form their surrounding: Distinctive sub-zones of oxides, silicates and organic matter

    NASA Astrophysics Data System (ADS)

    Koelbl, Angelika; Mueller, Carsten; Hoeschen, Carmen; Lugmeier, Johann; Said-Pullicino, Daniel; Romani, Marco; Koegel-Knabner, Ingrid

    2016-04-01

    mineral particles (e.g. oxides, clay minerals). Beside single 40 x 40 μm sized spots, mosaics of 20 x 20 μm sized images were combined to investigate the region from the surface of the root channels into the soil matrix. The image data of all detected secondary ions was analysed using line scans and designation of regions of interest (ROI) to evaluate relative occurrences and spatial distributions. The results revealed that the oxic zone around rice roots can be subdivided in distinctive sub-zones. We identified a distinctive zone of approx. 20 μm around the root channels, where exclusively oxide-associated organic matter occurred. This zone can be clearly distinguished from a clay mineral-dominated zone. In addition, oxide-incrusted root cells revealed coexisting regions of Fe (hydr)oxides and Al-organic complexes.

  15. Sequential rooting media and rooting capacity of Sequoiadendron giganteum in vitro. Peroxidase activity as a marker.

    PubMed

    Berthon, J Y; Boyer, N; Gaspar, T

    1987-10-01

    The rooting capacities of tips of seedling, juvenile and mature shoots of Sequoiadendron giganteum were compared on different rooting media (inductive and expressive media) after passage on an elongating medium. None of the cuttings rooted when continuously kept on medium containing the auxin NAA and vitamin D2. Peroxidase activity of all those cuttings on NAA+D2 first increased during the 7-9 first days and decreased in the days after. Rooting was obtained by transfer of the cuttings after periods longer than 7-9 days from the NAA+D2 inductive medium to a basal medium supplemented or not with rutin (expressive medium). The rooting capacity was emphasized by rutin treatment and was in correlation with the peroxidase peak reached on the NAA+D2 medium. Seedlings, characterised by the highest peroxidase activity, were most performing in rooting.

  16. Distribution of electrolytes in cells of the tomato root elongation zone during a gravitropic response

    NASA Astrophysics Data System (ADS)

    Klymchuk, Dmytro

    It is known that gravitropic response of etiolated seedlings is accompanied with asymmetrical distribution of auxins. The higher amount of auxins in the tissues of the lower sides of gravistimulated organs induces cell elongation in shoots and inhibits cell elongation in roots. In spite on the progress in understanding of the auxin-mediated effects on plant growth and development, there is no a complete conception concerning of gravitropic response mechanism. This investigation aims to determine whether the growth response of tomato seedlings on reorientation to the horizontal induces alterations in distribution of electrolytes in cells of the main root elongation zone, the site where induction of the curvature takes place. Tomato (Lycopersicon esculentum, Rio Grande) seedlings were grown on agar surface in 10 cm Petri dishes. The gravitropic response of seedlings was evaluated by the angle of gravitropic curvature after the roots were reoriented 90° from the vertical. Root segments of several mm basipetal to the root tip were fixed in liquid nitrogen, freeze-substituted with Lowicril K11M at -35° C. Sections 100 and 1000 nm thick were cut using LKB Ultrotome V, collected by dry method and analyzed in the 6060 LA SEM at accelerating voltage 15 kV. Using different modes of X-ray microanalysis (X-ray map, - line and -point analysis), distribution of the physiologically relevant ions (Na, P, K, Ca) in cells of surface layers of the upper and lower root sides were investigated. The peculiarities in localization of the electrolytes in different subcellular compartments as well as distribution in the direction between upper and lower sides of the root curvature are discussed.

  17. Root-zone acidity affects relative uptake of nitrate and ammonium from mixed nitrogen sources

    NASA Technical Reports Server (NTRS)

    Vessey, J. K.; Henry, L. T.; Chaillou, S.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

    1990-01-01

    Soybean plants (Glycine max [L.] Merr. cv Ransom) were grown for 21 days on 4 sources of N (1.0 mM NO3-, 0.67 mM NO3- plus 0.33 mM NH4+, 0.33 mM NO3- plus 0.67 mM NH4+, and 1.0 mM NH4+) in hydroponic culture with the acidity of the nutrient solution controlled at pH 6.0, 5.5, 5.0, and 4.5. Dry matter and total N accumulation of the plants was not significantly affected by N-source at any of the pH levels except for decreases in these parameters in plants supplied solely with NH4+ at pH 4.5. Shoot-to-root ratios increased in plants which had an increased proportion [correction of proporiton] of NH4(+)-N in their nutrient solutions at all levels of root-zone pH. Uptake of NO3- and NH4+ was monitored daily by ion chromatography as depletion of these ions from the replenished hydroponic solutions. At all pH levels the proportion of either ion that was absorbed increased as the ratio of that ion increased in the nutrient solution. In plants which were supplied with sources of NO3- plus NH4+, NH4+ was absorbed at a ratio of 2:1 over NO3- at pH 6.0. As the pH of the root-zone declined, however, NH4+ uptake decreased and NO3- uptake increased. Thus, the NH4+ to NO3- uptake ratio declined with decreases in root-zone pH. The data indicate a negative effect of declining root-zone pH on NH4+ uptake and supports a hypothesis that the inhibition of growth of plants dependent on NH4(+)-N at low pH is due to a decline in NH4+ uptake and a consequential limitation of growth by N stress.

  18. Enzyme and root activities in surface-flow constructed wetlands.

    PubMed

    Kong, Ling; Wang, Yu-Bin; Zhao, Li-Na; Chen, Zhang-He

    2009-07-01

    Sixteen small-scale wetlands planted with four plant species were constructed for domestic wastewater purification. The objective of this study was to determine the correlations between contaminant removal and soil enzyme activity, root activity, and growth in the constructed wetlands. The results indicated that correlations between contaminant removal efficiency and enzyme activity varied depending on the contaminants. The removal efficiency of NH4+ was significantly correlated with both urease and protease activity in all wetlands, and the removal of total phosphorus and soluble reactive phosphorus was significantly correlated with phosphatase activity in most wetlands, while the removal of total nitrogen, NO3(-) , and chemical oxygen demand (COD) was significantly correlated with enzyme activity only in a few instances. Correlations between soil enzyme activity and root activity varied among species. Activities of all enzymes were significantly correlated with root activity in Vetiveria zizanioides and Phragmites australis wetlands, but not in Hymenocallis littoralis wetlands. Significant correlations between enzyme activity and root biomass and between enzyme activity and root growth were found mainly in Cyperus flabelliformis wetlands. Root activity was significantly correlated with removal efficiencies of all contaminants except NO3(-) and COD in V. zizanioides wetlands. Enzyme activities and root activity showed single-peak seasonal patterns. Activities of phosphatase, urease, and cellulase were significantly higher in the top layer of the substrate than in the deeper layers, and there were generally no significant differences between the deeper layers (deeper than 15 cm).

  19. Cytoplasmic calcium levels in protoplasts from the cap and elongation zone of maize roots

    NASA Technical Reports Server (NTRS)

    Kiss, H. G.; Evans, M. L.; Johnson, J. D.

    1991-01-01

    Calcium has been implicated as a key component in the signal transduction process of root gravitropism. We measured cytoplasmic free calcium in protoplasts isolated from the elongation zone and cap of primary roots of light-grown, vertically oriented seedlings of Zea mays L. Protoplasts were loaded with the penta-potassium salts of fura-2 and indo-1 by incubation in acidic solutions of these calcium indicators. Loading increased with decreasing pH but the pH dependence was stronger for indo-1 than for fura-2. In the case of fura-2, loading was enhanced only at the lowest pH (4.5) tested. Dyes loaded in this manner were distributed predominantly in the cytoplasm as indicated by fluorescence patterns. As an alternative method of loading, protoplasts were incubated with the acetoxymethylesters of fura-2 and indo-1. Protoplasts loaded by this method exhibited fluorescence both in the cytoplasm and in association with various organelles. Cytoplasmic calcium levels measured using spectrofluorometry, were found to be 160 +/- 40 nM and 257 +/- 27 nM, respectively, in populations of protoplasts from the root cap and elongation zone. Cytoplasmic free calcium did not increase upon addition of calcium to the incubation medium, indicating that the passive permeability to calcium was low.

  20. Nicotinamide mononucleotide adenylyltransferase maintains active zone structure by stabilizing Bruchpilot

    PubMed Central

    Zang, Shaoyun; Ali, Yousuf O; Ruan, Kai; Zhai, R Grace

    2013-01-01

    Active zones are specialized presynaptic structures critical for neurotransmission. We show that a neuronal maintenance factor, nicotinamide mononucleotide adenylyltransferase (NMNAT), is required for maintaining active zone structural integrity in Drosophila by interacting with the active zone protein, Bruchpilot (BRP), and shielding it from activity-induced ubiquitin–proteasome-mediated degradation. NMNAT localizes to the peri-active zone and interacts biochemically with BRP in an activity-dependent manner. Loss of NMNAT results in ubiquitination, mislocalization and aggregation of BRP, and subsequent active zone degeneration. We propose that, as a neuronal maintenance factor, NMNAT specifically maintains active zone structure by direct protein–protein interaction. PMID:23154466

  1. Formate-derived H2 , a driver of hydrogenotrophic processes in the root-zone of a methane-emitting fen.

    PubMed

    Hunger, Sindy; Schmidt, Oliver; Gößner, Anita S; Drake, Harold L

    2016-09-01

    Wetlands are important sources of globally emitted methane. Plants mediate much of that emission by releasing root-derived organic carbon, including formate, a direct precursor of methane. Thus, the objective of this study was to resolve formate-driven processes potentially linked to methanogenesis in the fen root-zone. Although, formate was anticipated to directly trigger methanogenesis, the rapid anaerobic consumption of formate by Carex roots unexpectedly yielded H2 and CO2 via enzymes such as formate-H2 -lyase (FHL), and likewise appeared to enhance the utilization of organic carbon. Collectively, 57 [FeFe]- and [NiFe]-hydrogenase-containing family level phylotypes potentially linked to FHL activity were detected. Under anoxic conditions, root-derived fermentative Citrobacter and Hafnia isolates produced H2 from formate via FHL. Formate-derived H2 fueled methanogenesis and acetogenesis, and methanogenic (Methanoregula, Methanobacterium, Methanocella) and acetogenic (Acetonema, Clostridum, Sporomusa) genera potentially linked to these hydrogenotrophic activities were identified. The findings (i) provide novel insights on highly diverse root-associated FHL-containing taxa that can augment secondary hydrogenotrophic processes via the production of formate-derived H2 , (ii) demonstrate that formate can have a 'priming' effect on the utilization of organic carbon, and (iii) raise questions regarding the fate of formate-derived H2 when it diffuses away from the root-zone.

  2. TNFa/TNFR2 signaling is required for glial ensheathment at the dorsal root entry zone.

    PubMed

    Smith, Cody J; Wheeler, Michael A; Marjoram, Lindsay; Bagnat, Michel; Deppmann, Christopher D; Kucenas, Sarah

    2017-04-05

    Somatosensory information from the periphery is routed to the spinal cord through centrally-projecting sensory axons that cross into the central nervous system (CNS) via the dorsal root entry zone (DREZ). The glial cells that ensheath these axons ensure rapid propagation of this information. Despite the importance of this glial-axon arrangement, how this afferent nerve is assembled during development is unknown. Using in vivo, time-lapse imaging we show that as centrally-projecting pioneer axons from dorsal root ganglia (DRG) enter the spinal cord, they initiate expression of the cytokine TNFalpha. This induction coincides with ensheathment of these axons by associated glia via a TNF receptor 2 (TNFR2)-mediated process. This work identifies a signaling cascade that mediates peripheral glial-axon interactions and it functions to ensure that DRG afferent projections are ensheathed after pioneer axons complete their navigation, which promotes efficient somatosensory neural function.

  3. Synaptic Vesicle Proteins and Active Zone Plasticity

    PubMed Central

    Kittel, Robert J.; Heckmann, Manfred

    2016-01-01

    Neurotransmitter is released from synaptic vesicles at the highly specialized presynaptic active zone (AZ). The complex molecular architecture of AZs mediates the speed, precision and plasticity of synaptic transmission. Importantly, structural and functional properties of AZs vary significantly, even for a given connection. Thus, there appear to be distinct AZ states, which fundamentally influence neuronal communication by controlling the positioning and release of synaptic vesicles. Vice versa, recent evidence has revealed that synaptic vesicle components also modulate organizational states of the AZ. The protein-rich cytomatrix at the active zone (CAZ) provides a structural platform for molecular interactions guiding vesicle exocytosis. Studies in Drosophila have now demonstrated that the vesicle proteins Synaptotagmin-1 (Syt1) and Rab3 also regulate glutamate release by shaping differentiation of the CAZ ultrastructure. We review these unexpected findings and discuss mechanistic interpretations of the reciprocal relationship between synaptic vesicles and AZ states, which has heretofore received little attention. PMID:27148040

  4. Postoperative visual loss following dorsal root entry zone rhizotomy: A dreaded complication after a benign procedure

    PubMed Central

    Mishra, RK; Mahajan, C; Bindra, A; Goyal, K

    2016-01-01

    Postoperative visual loss (POVL) is a rare but grave postoperative complication. It has been mainly reported in patients undergoing cardiac and spinal surgeries. Dorsal root entry zone (DREZ) is pain relieving procedure performed in patients with refractory neuropathic pain with minimal complication rate. We present a case of unilateral POVL following DREZ rhizotomy in prone position in a patient having brachial plexus neuropathy. Exact etiology of vision loss was though not clear; hypotension, use of vasopressors and hemodilution may have led to vision loss in this patient. This case report highlights the associated risk factors for development of this hazardous complication. PMID:27833493

  5. Root-zone plant available water estimation using the SMOS-derived soil water index

    NASA Astrophysics Data System (ADS)

    González-Zamora, Ángel; Sánchez, Nilda; Martínez-Fernández, José; Wagner, Wolfgang

    2016-10-01

    Currently, there are several space missions capable of measuring surface soil moisture, owing to the relevance of this variable in meteorology, hydrology and agriculture. However, the Plant Available Water (PAW), which in some fields of application could be more important than the soil moisture itself, cannot be directly measured by remote sensing. Considering the root zone as the first 50 cm of the soil, in this study, the PAW at 25 cm and 50 cm and integrated between 0 and 50 cm of soil depth was estimated using the surface soil moisture provided by the Soil Moisture Ocean Salinity (SMOS) mission. For this purpose, the Soil Water Index (SWI) has been used as a proxy of the root-zone soil moisture, involving the selection of an optimal T (Topt), which can be interpreted as a characteristic soil water travel time. In this research, several tests using the correlation coefficient (R), the Nash-Sutcliffe score (NS), several error estimators and bias as predictor metrics were applied to obtain the Topt, making a comprehensive study of the T parameter. After analyzing the results, some differences were found between the Topt obtained using R and NS as decision metrics, and that obtained using the errors and bias, but the SWI showed good results as an estimator of the root-zone soil moisture. This index showed good agreement, with an R between 0.60 and 0.88. The method was tested from January 2010 to December 2014, using the database of the Soil Moisture Measurements Stations Network of the University of Salamanca (REMEDHUS) in Spain. The PAW estimation showed good agreement with the in situ measurements, following closely the dry-downs and wetting-up events, with R ranging between 0.60 and 0.92, and error values lower than 0.05 m3m-3. A slight underestimation was observed for both the PAW and root-zone soil moisture at the different depths; this could be explained by the underestimation pattern observed with the SMOS L2 soil moisture product, in line with previous

  6. Estimating root zone soil water content using limited soils information and surface soil moisture data assimilation

    NASA Astrophysics Data System (ADS)

    Heathman, Gary Claude

    2001-10-01

    The various hydrologic processes of infiltration, redistribution, drainage, evaporation, and water uptake by plants are strongly interdependent, as they occur sequentially or simultaneously. An important state variable that strongly influences the magnitude to which these rate processes occur is the amount of water present within the root zone, and in particular, the top few centimeters near the soil surface. Traditionally, measurements of soil moisture have been limited to point measurements made in the field. In general, averages of point measurements are used to characterize the soil moisture of an area, but these averages seldom yield information that is adequate to characterize large scale hydrologic processes. Recent advancements in remote sensing now make it possible to obtain areal estimates of surface soil moisture. The use of remotely sensed data to estimate surface soil moisture, combined with soil water and hydrologic modeling, provides a unique opportunity to advance our understanding of hydrologic processes at a much larger scale. Standard techniques for measuring soil moisture have been well documented, with commercial instrumentation being widely available. Various computer models have been developed to estimate soil moisture in the root and vadose zone, although their application over large scales is limited due to varying spatial and temporal field conditions. It is the combination of ground-based data (in-situ measurements), near-surface soil moisture data, and modeling that form the basis for this research. The interactive use of field research, remote sensing ground truth data, and integrated systems modeling is used to describe surface and profile soil moisture conditions at several locations within a large watershed. Successful application of this approach should improve our capabilities for estimating soil hydraulic properties and to better estimate water and chemical transport in the root zone, thus enhancing water use efficiency and plant

  7. On the antibacterial activity of roots of Capparis spinosa L.

    PubMed

    Boga, Carla; Forlani, Luciano; Calienni, Rocco; Hindley, Teresa; Hochkoeppler, Alejandro; Tozzi, Silvia; Zanna, Nicola

    2011-02-01

    A decoction of Capparis spinosa L. roots, widely used in the traditional folk medicine of southern Italy, was prepared and submitted to antibacterial activity tests, which showed an interesting bacteriostatic activity on the growth of Deinococcus radiophilus. Heterocyclic compounds were also recovered from the chloroformic extract of the roots.

  8. Fate of polycyclic aromatic hydrocarbons in plant-soil systems: Plant responses to a chemical stress in the root zone

    SciTech Connect

    Hoylman, A.M.

    1993-01-01

    Plant uptake and translocation of polycyclic aromatic hydrocarbons (PAHs) from soil was investigated to explore plant-microbial interactions in response to a chemical stress in the root zone. Plant uptake of individual PAHs was examined under laboratory conditions which maximized root exposure. White sweetclover, Melilotus alba, was grown in soils dosed with [sup 14]C-naphthalene, -phenanthrene, -pyrene, and -fluoranthene. The highest [sup 14]C concentrations were associated with roots, with decreasing concentrations observed in stems and leaves; however, the greatest percentage of recoverable [sup 14]C remained in the soil ([ge]86%) for all four PAHs. No evidence of bioaccumulation of the individual PAHs was found in M. alba over a 5-day exposure period. Root uptake and translocation of PAHs from soil to aboveground plant tissues proved to be a limited mechanism for PAH transport into terrestrial food chains. However, root surface sorption of PAHs may be important for plants in soils containing elevated concentrations of PAHs. Consequently, the root-soil interface may be important for plant-microbial interactions in response to a chemical stress. [sup 14]CO[sub 2] pulse-labeling studies provide evidence of a shift in [sup 14]C-allocation from aboveground tissue to the root zone when plants were exposed simultaneously to phenanthrene in soil. In addition, soil respiration and heterotrophic plate counts of rhizosphere microorganisms increased in plants exposed to phenanthrene as compared to controls. This study demonstrates the importance of the root-soil interface for plants growing in PAH contaminated soil and provides supportive evidence for a plant-microbial defense response to chemical toxicants in the root zone. Lipophilic toxicants in soils may reach high concentrations in the root zone, but rhizosphere microbial communities under the influence of the plant may reduce the amount of the compound that is actually taken up by the root.

  9. Common and distinguishing features of the bacterial and fungal communities in biological soil crusts and shrub root zone soils

    USGS Publications Warehouse

    Steven, Blaire; Gallegos-Graves, La Verne; Yeager, Chris; Belnap, Jayne; Kuske, Cheryl R.

    2013-01-01

    Soil microbial communities in dryland ecosystems play important roles as root associates of the widely spaced plants and as the dominant members of biological soil crusts (biocrusts) colonizing the plant interspaces. We employed rRNA gene sequencing (bacterial 16S/fungal large subunit) and shotgun metagenomic sequencing to compare the microbial communities inhabiting the root zones of the dominant shrub, Larrea tridentata (creosote bush), and the interspace biocrusts in a Mojave desert shrubland within the Nevada Free Air CO2 Enrichment (FACE) experiment. Most of the numerically abundant bacteria and fungi were present in both the biocrusts and root zones, although the proportional abundance of those members differed significantly between habitats. Biocrust bacteria were predominantly Cyanobacteria while root zones harbored significantly more Actinobacteria and Proteobacteria. Pezizomycetes fungi dominated the biocrusts while Dothideomycetes were highest in root zones. Functional gene abundances in metagenome sequence datasets reflected the taxonomic differences noted in the 16S rRNA datasets. For example, functional categories related to photosynthesis, circadian clock proteins, and heterocyst-associated genes were enriched in the biocrusts, where populations of Cyanobacteria were larger. Genes related to potassium metabolism were also more abundant in the biocrusts, suggesting differences in nutrient cycling between biocrusts and root zones. Finally, ten years of elevated atmospheric CO2 did not result in large shifts in taxonomic composition of the bacterial or fungal communities or the functional gene inventories in the shotgun metagenomes.

  10. Gibberellin Is Involved in Inhibition of Cucumber Growth and Nitrogen Uptake at Suboptimal Root-Zone Temperatures

    PubMed Central

    Zhang, Xiaocui; Yu, Xianchang

    2016-01-01

    Suboptimal temperature stress often causes heavy yield losses of vegetables by suppressing plant growth during winter and early spring. Gibberellin acid (GA) has been reported to be involved in plant growth and acquisition of mineral nutrients. However, no studies have evaluated the role of GA in the regulation of growth and nutrient acquisition by vegetables under conditions of suboptimal temperatures in greenhouse. Here, we investigated the roles of GA in the regulation of growth and nitrate acquisition of cucumber (Cucumis sativus L.) plants under conditions of short-term suboptimal root-zone temperatures (Tr). Exposure of cucumber seedlings to a Tr of 16°C led to a significant reduction in root growth, and this inhibitory effect was reversed by exogenous application of GA. Expression patterns of several genes encoding key enzymes in GA metabolism were altered by suboptimal Tr treatment, and endogenous GA concentrations in cucumber roots were significantly reduced by exposure of cucumber plants to 16°C Tr, suggesting that inhibition of root growth by suboptimal Tr may result from disruption of endogenous GA homeostasis. To further explore the mechanism underlying the GA-dependent cucumber growth under suboptimal Tr, we studied the effect of suboptimal Tr and GA on nitrate uptake, and found that exposure of cucumber seedlings to 16°C Tr led to a significant reduction in nitrate uptake rate, and exogenous application GA can alleviate the down-regulation by up regulating the expression of genes associated with nitrate uptake. Finally, we demonstrated that N accumulation in cucumber seedlings under suboptimal Tr conditions was improved by exogenous application of GA due probably to both enhanced root growth and nitrate absorption activity. These results indicate that a reduction in endogenous GA concentrations in roots due to down-regulation of GA biosynthesis at transcriptional level may be a key event to underpin the suboptimal Tr-induced inhibition of root

  11. Gibberellin Is Involved in Inhibition of Cucumber Growth and Nitrogen Uptake at Suboptimal Root-Zone Temperatures.

    PubMed

    Bai, Longqiang; Deng, Huihui; Zhang, Xiaocui; Yu, Xianchang; Li, Yansu

    2016-01-01

    Suboptimal temperature stress often causes heavy yield losses of vegetables by suppressing plant growth during winter and early spring. Gibberellin acid (GA) has been reported to be involved in plant growth and acquisition of mineral nutrients. However, no studies have evaluated the role of GA in the regulation of growth and nutrient acquisition by vegetables under conditions of suboptimal temperatures in greenhouse. Here, we investigated the roles of GA in the regulation of growth and nitrate acquisition of cucumber (Cucumis sativus L.) plants under conditions of short-term suboptimal root-zone temperatures (Tr). Exposure of cucumber seedlings to a Tr of 16°C led to a significant reduction in root growth, and this inhibitory effect was reversed by exogenous application of GA. Expression patterns of several genes encoding key enzymes in GA metabolism were altered by suboptimal Tr treatment, and endogenous GA concentrations in cucumber roots were significantly reduced by exposure of cucumber plants to 16°C Tr, suggesting that inhibition of root growth by suboptimal Tr may result from disruption of endogenous GA homeostasis. To further explore the mechanism underlying the GA-dependent cucumber growth under suboptimal Tr, we studied the effect of suboptimal Tr and GA on nitrate uptake, and found that exposure of cucumber seedlings to 16°C Tr led to a significant reduction in nitrate uptake rate, and exogenous application GA can alleviate the down-regulation by up regulating the expression of genes associated with nitrate uptake. Finally, we demonstrated that N accumulation in cucumber seedlings under suboptimal Tr conditions was improved by exogenous application of GA due probably to both enhanced root growth and nitrate absorption activity. These results indicate that a reduction in endogenous GA concentrations in roots due to down-regulation of GA biosynthesis at transcriptional level may be a key event to underpin the suboptimal Tr-induced inhibition of root

  12. Flexible Microsensor Array for the Root Zone Monitoring of Porous Tube Plant Growth System

    NASA Technical Reports Server (NTRS)

    Sathyan, Sandeep; Kim, Chang-Soo; Porterfield, D. Marshall; Nagle, H. Troy; Brown, Christopher S.

    2004-01-01

    Control of oxygen and water in the root zone is vital to support plant growth in the microgravity environment. The ability to control these sometimes opposing parameters in the root zone is dependent upon the availability of sensors to detect these elements and provide feedback for control systems. In the present study we demonstrate the feasibility of using microsensor arrays on a flexible substrate for dissolved oxygen detection, and a 4-point impedance microprobe for surface wetness detection on the surface of a porous tube (PT) nutrient delivery system. The oxygen microsensor reported surface oxygen concentrations that correlated with the oxygen concentrations of the solution inside the PT when operated at positive pressures. At negative pressures the microsensor shows convergence to zero saturation (2.2 micro mol/L) values due to inadequate water film formation on porous tube surface. The 4-point microprobe is useful as a wetness detector as it provides a clear differentiation between dry and wet surfaces. The unique features of the dissolved oxygen microsensor array and 4-point microprobe include small and simple design, flexibility and multipoint sensing. The demonstrated technology is anticipated to provide low cost, and highly reliable sensor feedback monitoring plant growth nutrient delivery system in both terrestrial and microgravity environments.

  13. Simulating sunflower canopy temperatures to infer root-zone soil water potential

    NASA Technical Reports Server (NTRS)

    Choudhury, B. J.; Idso, S. B.

    1983-01-01

    A soil-plant-atmosphere model for sunflower (Helianthus annuus L.), together with clear sky weather data for several days, is used to study the relationship between canopy temperature and root-zone soil water potential. Considering the empirical dependence of stomatal resistance on insolation, air temperature and leaf water potential, a continuity equation for water flux in the soil-plant-atmosphere system is solved for the leaf water potential. The transpirational flux is calculated using Monteith's combination equation, while the canopy temperature is calculated from the energy balance equation. The simulation shows that, at high soil water potentials, canopy temperature is determined primarily by air and dew point temperatures. These results agree with an empirically derived linear regression equation relating canopy-air temperature differential to air vapor pressure deficit. The model predictions of leaf water potential are also in agreement with observations, indicating that measurements of canopy temperature together with a knowledge of air and dew point temperatures can provide a reliable estimate of the root-zone soil water potential.

  14. Soil moisture variability of root zone profiles within SMEX02 remote sensing footprints

    NASA Astrophysics Data System (ADS)

    Choi, Minha; Jacobs, Jennifer M.

    2007-04-01

    Remote sensing of soil moisture effectively provides soil moisture at a large scale, but does not explain highly heterogeneous soil moisture characteristics within remote sensing footprints. In this study, field scale spatio-temporal variability of root zone soil moisture was analyzed. During the Soil Moisture Experiment 2002 (SMEX02), daily soil moisture profiles (i.e., 0-6, 5-11, 15-21, and 25-31 cm) were measured in two fields in Walnut Creek watershed, Ames, Iowa, USA. Theta probe measurements of the volumetric soil moisture profile data were used to analyze statistical moments and time stability and to validate soil moisture predicted by a simple physical model simulation. For all depths, the coefficient of variation of soil moisture is well explained by the mean soil moisture using an exponential relationship. The simple model simulated very similar variability patterns as those observed. As soil depth increases, soil moisture distributions shift from skewed to normal patterns. At the surface depth, the soil moisture during dry down is log-normally distributed, while the soil moisture is normally distributed after rainfall. At all depths below the surface, the normal distribution captures the soil moisture variability for all conditions. Time stability analyses show that spatial patterns of sampling points are preserved for all depths and that time stability of surface measurements is a good indicator of subsurface time stability. The most time stable sampling sites estimate the field average root zone soil moisture value within ±2.1% volumetric soil moisture.

  15. High-resolution prediction of soil available water content within the crop root zone

    NASA Astrophysics Data System (ADS)

    Haghverdi, Amir; Leib, Brian G.; Washington-Allen, Robert A.; Ayers, Paul D.; Buschermohle, Michael J.

    2015-11-01

    A detailed understanding of soil hydraulic properties, particularly soil available water content (AWC) within the effective root zone, is needed to optimally schedule irrigation in fields with substantial spatial heterogeneity. However, it is difficult and time consuming to directly measure soil hydraulic properties. Therefore, easily collected and measured soil properties, such as soil texture and/or bulk density, that are well correlated with hydraulic properties are used as proxies to develop pedotransfer functions (PTF). In this study, multiple modeling scenarios were developed and evaluated to indirectly predict high resolution AWC maps within the effective root zone. The modeling techniques included kriging, co-kriging, regression kriging, artificial neural networks (NN) and geographically weighted regression (GWR). The efficiency of soil apparent electrical conductivity (ECa) as proximal data in the modeling process was assessed. There was a good agreement (root mean square error (RMSE) = 0.052 cm3 cm-3 and r = 0.88) between observed and point prediction of water contents using pseudo continuous PTFs. We found that both GWR (mean RMSE = 0.062 cm3 cm-3) and regression kriging (mean RMSE = 0.063 cm3 cm-3) produced the best water content maps with these accuracies improved up to 19% when ECa was used as an ancillary soil attribute in the interpolation process. The maps indicated fourfold differences in AWC between coarse- and fine-textured soils across the study site. This provided a template for future investigations for evaluating the efficiency of variable rate irrigation management scenarios in accounting for the spatial heterogeneity of soil hydraulic attributes.

  16. Plant growth promoting rhizobacteria (PGPR): the bugs to debug the root zone.

    PubMed

    Dutta, Swarnalee; Podile, Appa Rao

    2010-08-01

    Interaction of plant growth promoting rhizobacteria (PGPR) with host plants is an intricate and interdependent relationship involving not only the two partners but other biotic and abiotic factors of the rhizosphere region. Survival and establishment of PGPR in the rhizosphere is a major concern of agricultural microbiologists. Various factors that play a determining role include the composition of root exudates, properties of bacterial strain, soil status, and activities of other soil microbes. This review focuses on the different components that affect root colonization of PGPR and the underlying principles behind the success of these bugs to tide over the unfavorable conditions.

  17. TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.

    PubMed

    Yang, Zhong-Bao; Geng, Xiaoyu; He, Chunmei; Zhang, Feng; Wang, Rong; Horst, Walter J; Ding, Zhaojun

    2014-07-01

    The transition zone (TZ) of the root apex is the perception site of Al toxicity. Here, we show that exposure of Arabidopsis thaliana roots to Al induces a localized enhancement of auxin signaling in the root-apex TZ that is dependent on TAA1, which encodes a Trp aminotransferase and regulates auxin biosynthesis. TAA1 is specifically upregulated in the root-apex TZ in response to Al treatment, thus mediating local auxin biosynthesis and inhibition of root growth. The TAA1-regulated local auxin biosynthesis in the root-apex TZ in response to Al stress is dependent on ethylene, as revealed by manipulating ethylene homeostasis via the precursor of ethylene biosynthesis 1-aminocyclopropane-1-carboxylic acid, the inhibitor of ethylene biosynthesis aminoethoxyvinylglycine, or mutant analysis. In response to Al stress, ethylene signaling locally upregulates TAA1 expression and thus auxin responses in the TZ and results in auxin-regulated root growth inhibition through a number of auxin response factors (ARFs). In particular, ARF10 and ARF16 are important in the regulation of cell wall modification-related genes. Our study suggests a mechanism underlying how environmental cues affect root growth plasticity through influencing local auxin biosynthesis and signaling.

  18. Numerical Modeling of Water Fluxes in the Root Zone of Irrigated Pecan

    NASA Astrophysics Data System (ADS)

    Shukla, M. K.; Deb, S.

    2010-12-01

    Information is still limited on the coupled liquid water, water vapor, heat transport and root water uptake for irrigated pecan. Field experiments were conducted in a sandy loam mature pecan field in Las Cruces, New Mexico. Three pecan trees were chosen to monitor diurnal soil water content under the canopy (approximately half way between trunk and the drip line) and outside the drip line (bare spot) along a transect at the depths of 5, 10, 20, 40, and 60 cm using TDR sensors. Soil temperature sensors were installed at an under-canopy locations and bare spot to monitor soil temperature data at depths of 5, 10, 20, and 40 cm. Simulations of the coupled transport of liquid water, water vapor, and heat with and without root water uptake were carried out using the HYDRUS-1D code. Measured soil hydraulic and thermal properties, continuous meteorological data, and pecan characteristics, e.g. rooting depth, leaf area index, were used in the model simulations. Model calibration was performed for a 26-day period from DOY 204 through DOY 230, 2009 based on measured soil water content and soil temperature data at different soil depths, while the model was validated for a 90-day period from DOY 231 through DOY 320, 2009 at bare spot. Calibrated parameters were also used to apply the model at under-canopy locations for a 116-day period from DOY 204 to 320. HYDRUS-1D simulated water contents and soil temperatures correlated well with the measured data at each depth. Numerical assessment of various transport mechanisms and quantitative estimates of isothermal and thermal water fluxes with and without root water uptake in the unsaturated zone within canopy and bare spot is in progress and will be presented in the conference.

  19. Assimilation of Smos Observations to Generate a Prototype SMAP Level 4 Surface and Root-Zone Soil Moisture Product

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf H.; De Lannoy, Gabrielle J. M.; Crow, Wade T.; Koster, Randal D.; Kimball, John

    2012-01-01

    The Soil Moisture Active and Passive (SMAP; [1]) mission is being implemented by NASA for launch in October 2014. The primary science objectives of SMAP are to enhance understanding of land surface controls on the water, energy and carbon cycles, and to determine their linkages. Moreover, the high-resolution soil moisture mapping provided by SMAP has practical applications in weather and seasonal climate prediction, agriculture, human health, drought and flood decision support. The Soil Moisture and Ocean Salinity (SMOS; [2]) mission was launched by ESA in November 2009 and has since been observing L-band (1.4 GHz) upwelling passive microwaves. In this paper we describe our use of SMOS brightness temperature observations to generate a prototype of the planned SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) product [5].

  20. Toxicity of CuO Nanoparticles to Structure and Metabolic Activity of Allium cepa Root Tips.

    PubMed

    Deng, Fei; Wang, Shuling; Xin, Hua

    2016-11-01

    Roots of Allium cepa were exposed to six CuO NPs suspensions (0, 5, 10, 20, 40, 80 mg L(-1)) in this study. Results revealed that with the increase of CuO NPs concentration, the Cu content in roots increased significantly. Compared to control, onion roots treated with CuO NPs (except 5 mg L(-1) suspension) grew slowly after 24 h. The surface of the root cap and meristematic zone were obviously damaged. The apical meristem of roots treated by 10 mg L(-1) and above concentrations stopped division. The nucleus of meristematic cells deformed, and nucleoli number increased. The plasmolysis occurred, and the cell membrane and nuclear membrane fractured. With the increase of CuO NPs concentration, the MDA content increased, and the root activity decreased. When dealt with 80 mg L(-1) CuO NPs for 72 h, onion roots appeared to be corroded.

  1. Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone

    PubMed Central

    Wilson, Michael H.; Holman, Tara J.; Sørensen, Iben; Cancho-Sanchez, Ester; Wells, Darren M.; Swarup, Ranjan; Knox, J. Paul; Willats, William G. T.; Ubeda-Tomás, Susana; Holdsworth, Michael; Bennett, Malcolm J.; Vissenberg, Kris; Hodgman, T. Charlie

    2015-01-01

    Plant cell wall composition is important for regulating growth rates, especially in roots. However, neither analyses of cell wall composition nor transcriptomes on their own can comprehensively reveal which genes and processes are mediating growth and cell elongation rates. This study reveals the benefits of carrying out multiple analyses in combination. Sections of roots from five anatomically and functionally defined zones in Arabidopsis thaliana were prepared and divided into three biological replicates. We used glycan microarrays and antibodies to identify the major classes of glycans and glycoproteins present in the cell walls of these sections, and identified the expected decrease in pectin and increase in xylan from the meristematic zone (MS), through the rapid and late elongation zones (REZ, LEZ) to the maturation zone and the rest of the root, including the emerging lateral roots. Other compositional changes included extensin and xyloglucan levels peaking in the REZ and increasing levels of arabinogalactan-proteins (AGP) epitopes from the MS to the LEZ, which remained high through the subsequent mature zones. Immuno-staining using the same antibodies identified the tissue and (sub)cellular localization of many epitopes. Extensins were localized in epidermal and cortex cell walls, while AGP glycans were specific to different tissues from root-hair cells to the stele. The transcriptome analysis found several gene families peaking in the REZ. These included a large family of peroxidases (which produce the reactive oxygen species (ROS) needed for cell expansion), and three xyloglucan endo-transglycosylase/hydrolase genes (XTH17, XTH18, and XTH19). The significance of the latter may be related to a role in breaking and re-joining xyloglucan cross-bridges between cellulose microfibrils, a process which is required for wall expansion. Knockdowns of these XTHs resulted in shorter root lengths, confirming a role of the corresponding proteins in root extension

  2. Prediction of Root Zone Soil Moisture using Remote Sensing Products and In-Situ Observation under Climate Change Scenario

    NASA Astrophysics Data System (ADS)

    Singh, G.; Panda, R. K.; Mohanty, B.

    2015-12-01

    Prediction of root zone soil moisture status at field level is vital for developing efficient agricultural water management schemes. In this study, root zone soil moisture was estimated across the Rana watershed in Eastern India, by assimilation of near-surface soil moisture estimate from SMOS satellite into a physically-based Soil-Water-Atmosphere-Plant (SWAP) model. An ensemble Kalman filter (EnKF) technique coupled with SWAP model was used for assimilating the satellite soil moisture observation at different spatial scales. The universal triangle concept and artificial intelligence techniques were applied to disaggregate the SMOS satellite monitored near-surface soil moisture at a 40 km resolution to finer scale (1 km resolution), using higher spatial resolution of MODIS derived vegetation indices (NDVI) and land surface temperature (Ts). The disaggregated surface soil moisture were compared to ground-based measurements in diverse landscape using portable impedance probe and gravimetric samples. Simulated root zone soil moisture were compared with continuous soil moisture profile measurements at three monitoring stations. In addition, the impact of projected climate change on root zone soil moisture were also evaluated. The climate change projections of rainfall were analyzed for the Rana watershed from statistically downscaled Global Circulation Models (GCMs). The long-term root zone soil moisture dynamics were estimated by including a rainfall generator of likely scenarios. The predicted long term root zone soil moisture status at finer scale can help in developing efficient agricultural water management schemes to increase crop production, which lead to enhance the water use efficiency.

  3. Anxiolytic and nootropic activity of Vetiveria zizanioides roots in mice

    PubMed Central

    Nirwane, Abhijit M.; Gupta, Purnima V.; Shet, Jitesh H.; Patil, Sandeep B.

    2015-01-01

    Background: Vetiveria zizanioides (VZ) (family: Poaceae), an aromatic plant commonly known as “Vetiver” has been used for various ailments. Concerning the various ailments being listed as the traditional uses of VZ, no mention about anxiety and memory was found. Objective: The present study examined the anxiolytic and memory enhancing activity of ethanolic extract of V. zizanioides (EEVZ) dried roots in mice. Materials and Methods: Activity of EEVZ was assessed using models of anxiety (elevated plus-maze [EPM], light/dark test, hole board test, marble-burying test) and learning and memory (EPM, passive shock avoidance paradigm). Results: EEVZ at doses of 100, 200, and 300 mg/kg b.w. illustrated significant anxiolytic activity indicated by increase in time spent and number of entries in open arm, time spent in lightened area, number of head poking and number marble buried when compared to that of diazepam (1 mg/kg b.w.), a reference standard. The same treatment showed a significant decrease in transfer latency to reach open arm, shock-free zone, and number of mistakes when compared to that of scopolamine (0.3 mg/kg b.w.). EEVZ in all the doses (100, 200, and 300 mg/kg b.w.) significantly decreased mortality in sodium nitrite (250 mg/kg b.w.) induced hypoxia and also significantly increases contraction induced by acetylcholine on rat ileum preparation. Conclusion: The result emanated in the present investigation revealed EEVZ possesses significant anxiolytic and nootropic activity by possibly interplaying with neurotransmitters implicated in anxiety and learning and memory. PMID:26604550

  4. Spatial and Temporal Variability in Nitrate Concentration below the Root Zone in an Almond Orchard and its Implications for Potential Groundwater Contamination

    NASA Astrophysics Data System (ADS)

    Baram, S.; Couvreur, V.

    2015-12-01

    Spatial and Temporal Variability in Nitrate Concentration below the Root Zone in an Almond Orchard and its Implications for Potential Groundwater Contamination S. Baram1, M. Read1, D. Smart2, T. Harter1, J Hopmans11Department of Land, Air & Water Resources University of California Davis 2Department of Viticulture and Enology University of California Davis Estimates of water and fertilizer losses below the root zone of nitrogen (N) intensive agricultural orchard crops are major concern in groundwater protection. However, microscopic and macroscopic heterogeneity in unsaturated soils make accurate loss estimates very challenging. In this study we aimed to examine field scale variability in nitrate (NO3-) losses below the root zone (>250cm) of a 15 years old almond orchard in Madera county California. Based on a soil variability survey, tensiometers and solution samplers were installed at 17 locations around the 40 acre orchard. The hydraulic potential and the NO3- concentrations were monitored over two growing seasons. Nitrate concentrations varied spatially and temporarily, and ranged from below to more than 30 times higher than the drinking water contamination standard of >10 mg NO3--N L-1. Principal component analysis of the relations between the NO3- concentration, presence of a hard pan in the subsurface, its depth and thickness, and the fertigation and irrigation events indicated that none of these factors explained the observed variability in pore-water NO3- concentrations, with hard pan being the most dominant factor. Throughout the irrigation season minimal leaching was observed, yet post-harvest and preseason flooding events led to deep drainage. Due to the high spatial and temporal variability in the NO3- concentration and the potential for deep drainage following a wet winter or flooding event we conclude that the most efficient way to protect ground water is by transitioning to high frequency low nitrogen fertigation which would retain NO3-in the active

  5. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.

    PubMed

    Kim, Eun-Sol; Choe, Goh; Sebastian, Jose; Ryu, Kook Hui; Mao, Linyong; Fei, Zhangjun; Lee, Ji-Young

    2016-06-01

    Root apical meristem (RAM) drives post-embryonic root growth by constantly supplying cells through mitosis. It is composed of stem cells and their derivatives, the transit-amplifying (TA) cells. Stem cell organization and its maintenance in the RAM are well characterized, however, their relationships with TA cells remain unclear. SHORTROOT (SHR) is critical for root development. It patterns cell types and promotes the post-embryonic root growth. Defective root growth in the shr has been ascribed to the lack of quiescent center (QC), which maintains the surrounding stem cells. However, our recent investigation indicated that SHR maintains TA cells independently of QC by modulating PHABULOSA (PHB) through miRNA165/6. PHB controls TA cell activity by modulating cytokinin levels and type B Arabidopsis Response Regulator activity, in a dosage-dependent manner. To further understand TA cell regulation, we conducted a shr suppressor screen. With an extensive mutagenesis screen followed by genome sequencing of a pooled F2 population, we discovered two suppressor alleles with mutations in HAWAIIAN SKIRT (HWS). HWS, encoding an F-box protein with kelch domain, is expressed, partly depending on SHR, in the root cap and in the pericycle of the differentiation zone. Interestingly, root growth in the shr hws was more active than the wild-type roots for the first 7 days after germination, without recovering QC. Contrary to shr phb, shr hws did not show a recovery of cytokinin signaling. These indicate that HWS affects QC-independent TA cell activities through a pathway distinctive from PHB.

  6. Induction of curvature in maize roots by calcium or by thigmostimulation: role of the postmitotic isodiametric growth zone

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1992-01-01

    We examined the response of primary roots of maize (Zea mays L. cv Merit) to unilateral application of calcium with particular attention to the site of application, the dependence on growth rate, and possible contributions of thigmotropic stimulation during application. Unilateral application of agar to the root cap induced negative curvature whether or not the agar contained calcium. This apparent thigmotropic response was enhanced by including calcium in the agar. Curvature away from objects applied unilaterally to the extreme root tip occurred both in intact and detipped roots. When agar containing calcium chloride was applied to one side of the postmitotic isodiametric growth zone ( a region between the apical meristem and the elongation zone), the root curved toward the side of application. This response could not be induced by plain agar. We conclude that curvature away from calcium applied to the root tip results from a thigmotropic response to stimulation during application. In contrast, curvature toward the calcium applied to the postmitotic isodiametric growth zone results from direct calcium-induced inhibition of growth.

  7. Controlling Factors of Root-Zone Soil Moisture Spectra in Tropical and Temperate Forests

    NASA Astrophysics Data System (ADS)

    Nakai, T.; Katul, G. G.; Kotani, A.; Igarashi, Y.; Ohta, T.; Kumagai, T.

    2014-12-01

    Characteristics of root-zone soil moisture spectra in a subtropical monsoon forest in Thailand (Mae Moh) and two warm-temperate forests in the US (Duke) and Japan (Seto) were examined for time scales ranging from 30 minutes to multiple years. These forested areas have comparable maximum leaf area index but markedly different phase relations between evapotranspiration, net radiation, precipitation, and soil moisture. A hierarchy of models that sequentially introduce the spectrum of precipitation, net radiation, and nonlinearites in the damping originating from stomatal controls and drainage losses were used. If the precipitation is random, and the damping term by evapotranspiration and drainage is increased linearly with increasing soil moisture, the temporal variability of soil moisture simplifies to a first order Markov process commonly employed in the analysis of soil moisture in climate models. Its spectrum exhibits a Lorentz function with a white-noise behavior at low frequency and red-noise behavior at high frequency separated by a time-scale constant for intermediate frequencies. Such first order Markov process model with its time scale defined by the maximum wet surface evapotranspiration, soil porosity, and root-zone depth did not represent the observed soil moisture spectra at all three sites. Adding the effect of precipitation and net radiation variability were necessary for representing the actual soil moisture spectra. While the observed soil moisture spectra were satisfactorily reproduced by these additions, the relative importance of precipitation and net radiation to the soil moisture spectra differed between sites. The soil moisture memory, inferred from the observed soil moisture spectra (model decay time scale), was about 25-38 days, which was larger than that determined from maximum wet evapotranspiration and available pore space alone, except that these two time scales in Seto forest were nearly the same.

  8. Persistence and memory timescales in root-zone soil moisture dynamics

    NASA Astrophysics Data System (ADS)

    Ghannam, Khaled; Nakai, Taro; Paschalis, Athanasios; Oishi, Christopher A.; Kotani, Ayumi; Igarashi, Yasunori; Kumagai, Tomo'omi; Katul, Gabriel G.

    2016-02-01

    The memory timescale that characterizes root-zone soil moisture remains the dominant measure in seasonal forecasts of land-climate interactions. This memory is a quasi-deterministic timescale associated with the losses (e.g., evapotranspiration) from the soil column and is often interpreted as persistence in soil moisture states. Persistence, however, represents a distribution of time periods where soil moisture resides above or below some prescribed threshold and is therefore inherently probabilistic. Using multiple soil moisture data sets collected at high resolution (subhourly) across different biomes and climates, this paper explores the differences, underlying dynamics, and relative importance of memory and persistence timescales in root-zone soil moisture. A first-order Markov process, commonly used to interpret soil moisture fluctuations derived from climate simulations, is also used as a reference model. Persistence durations of soil moisture below the plant water-stress level (chosen as the threshold), and the temporal spectrum of upcrossings and downcrossings of this threshold, are compared to the memory timescale and spectrum of the full time series, respectively. The results indicate that despite the differences between meteorological drivers, the spectrum of threshold-crossings is similar across sites, and follows a unique relation with that of the full soil moisture series. The distribution of persistence times exhibits an approximate stretched exponential type and reflects a likelihood of exceeding the memory at all sites. However, the rainfall counterpart of these distributions shows that persistence of dry atmospheric periods is less likely at sites with long soil moisture memory. The cluster exponent, a measure of the density of threshold-crossings in a time frame, reveals that the clustering tendency in rainfall events (on-off switches) does not translate directly to clustering in soil moisture. This is particularly the case in climates where

  9. Methyl jasmonate affects morphology, number and activity of endoplasmic reticulum bodies in Raphanus sativus root cells.

    PubMed

    Gotté, Maxime; Ghosh, Rajgourab; Bernard, Sophie; Nguema-Ona, Eric; Vicré-Gibouin, Maïté; Hara-Nishimura, Ikuko; Driouich, Azeddine

    2015-01-01

    The endoplasmic reticulum (ER) bodies are ER-derived structures that are found in Brassicaceae species and thought to play a role in defense. Here, we have investigated the occurrence, distribution and function of ER bodies in root cells of Raphanus sativus using a combination of microscopic and biochemical methods. We have also assessed the response of ER bodies to methyl jasmonate (MeJA), a phytohormone that mediates plant defense against wounding and pathogens. Our results show that (i) ER bodies do occur in different root cell types from the root cap region to the differentiation zone; (ii) they do accumulate a PYK10-like protein similar to the major marker protein of ER bodies that is involved in defense in Arabidopsis thaliana; and (iii) treatment of root cells with MeJA causes a significant increase in the number of ER bodies and the activity of β-glucosidases. More importantly, MeJA was found to induce the formation of very long ER bodies that results from the fusion of small ones, a phenomenon that has not been reported in any other study so far. These findings demonstrate that MeJA impacts the number and morphology of functional ER bodies and stimulates ER body enzyme activities, probably to participate in defense responses of radish root. They also suggest that these structures may provide a defensive system specific to root cells.

  10. Calibration of the Root Zone Water Quality Model and Application of Data Assimilation Techniques to Estimate Profile Soil Moisture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Estimation of soil moisture has received considerable attention in the areas of hydrology, agriculture, meteorology and environmental studies because of its role in the partitioning water and energy at the land surface. In this study, the USDA, Agricultural Research Service, Root Zone Water Quality ...

  11. [Performance characteristics of root zone moisture and water potential sensors for greenhouses in the conditions of extended space flight].

    PubMed

    Podolskiy, I G; Strugov, O M; Bingham, G E

    2014-01-01

    The investigation was performed using greenhouse Lada in the Russian segment of the International space station (ISS RS) as part of space experiment Plants-2 during ISS missions 5 through to 22. A set of 6 point moisture sensors embedded in the root zone (turface particles of 1-2 mm in diam.) and 4 tensiometers inside root modules (RM) were used to monitor moisture content and water potential in the root zone. The purpose was to verify functionality and to test performance of the sensors in the spacefight environment. It was shown that with the average RZ moisture content of 80% the measurement error of the sensors do not exceed ± 1.5%. Dynamic analysis of the tensiometers measurements attests that error in water potential measurements does not exceed ± 111 Pa.

  12. Fate of polycyclic aromatic hydrocarbons in plant-soil systems: Plant responses to a chemical stress in the root zone

    SciTech Connect

    Hoylman, Anne M.

    1994-01-01

    Under laboratory conditions selected to maximize root uptake, plant tissue distribution of PAH-derived 14C was largely limited to root tissue of Malilotus alba. These results suggest that plant uptake of PAHs from contaminated soil via roots, and translocation to aboveground plant tissues (stems and leaves), is a limited mechanism for transport into terrestrial food chains. However, these data also indicate that root surface sorption of PAHs may be important for plants grown in soils containing elevated concentration PAHs. Root surface sorption of PAHs may be an important route of exposure for plants in soils containing elevated concentrations of PAHS. Consequently, the root-soil interface may be the site of plant-microbial interactions in response to a chemical stress. In this study, evidence of a shift in carbon allocation to the root zone of plants exposed to phenanthrene and corresponding increases in soil respiration and heterotrophic plate counts provide evidence of a plant-microbial response to a chemical stress. The results of this study establish the importance of the root-soil interface for plants growing in PAH contaminated soil and indicate the existence of plant-microbial interactions in response to a chemical stress. These results may provide new avenues of inquiry for studies of plant toxicology, plant-microbial interactions in the rhizosphere, and environmental fates of soil contaminants. In addition, the utilization of plants to enhance the biodegradation of soil contaminants may require evaluation of plant physiological changes and plant shifts in resource allocation.

  13. Introducing the 2-DROPS model for two-dimensional simulation of crop roots and pesticide within the soil-root zone.

    PubMed

    Agatz, Annika; Brown, Colin D

    2017-05-15

    Mathematical models of pesticide fate and behaviour in soils have been developed over the last 30years. Most models simulate fate of pesticides in a 1-dimensional system successfully, supporting a range of applications where the prediction target is either bulk residues in soil or receiving compartments outside of the soil zone. Nevertheless, it has been argued that the 1-dimensional approach is limiting the application of knowledge on pesticide fate under specific pesticide placement strategies, such as seed, furrow and band applications to control pests and weeds. We report a new model (2-DROPS; 2-Dimensional ROots and Pesticide Simulation) parameterised for maize and we present simulations investigating the impact of pesticide properties (thiamethoxam, chlorpyrifos, clothianidin and tefluthrin), pesticide placement strategies (seed treatment, furrow, band and broadcast applications), and soil properties (two silty clay loam and two loam top soils with either silty clay loam, silt loam, sandy loam or unconsolidated bedrock in the lower horizons) on microscale pesticide distribution in the soil profile. 2-DROPS is to our knowledge the first model that simulates temporally- and spatially-explicit water and pesticide transport in the soil profile under the influence of explicit and stochastic development of root segments. This allows the model to describe microscale movement of pesticide in relation to root segments, and constitutes an important addition relative to existing models. The example runs demonstrate that the pesticide moves locally towards root segments due to water extraction for plant transpiration, that the water holding capacity of the top soil determines pesticide transport towards the soil surface in response to soil evaporation, and that the soil type influences the pesticide distribution zone in all directions. 2-DROPS offers more detailed information on microscale root and pesticide appearance compared to existing models and provides the

  14. [Correlation analysis between meteorological factors, biomass, and active components of Salvia miltiorrhiza in different climatic zones].

    PubMed

    Zhang, Chen-lu; Liang, Zong-suo; Guo, Hong-bo; Liu, Jing-ling; Liu, Yan; Liu, Feng-hua; Wei, Lang-zhu

    2015-02-01

    In this study, the growth and accumulation of active components of Salvia miltiorrhiza in twenty two experimental sites which crossing through three typical climate zones. The S. miltiorrhiza seedlings with the same genotype were planted in each site in spring, which were cultivated in fields with uniform management during their growing seasons till to harvest. The diterpene ketones (dihydrotanshinone, cryptotanshinone, tanshinone I and tanshinone II(A)) in S. miltiorrhiza root samples were determined by using high-performance liquid chromatography (HPLC) method. The biomass of root (root length, number of root branches, root width and dry weight) was also measured. The results showed that tanshinone II(A) in all samples of each site were higher than the standards required by China Pharmacopoeia. It has been found there is a relationship between root shape and climate change. The correlation analysis between active components and meteorological factors showed that the accumulation of tanshinones were effected by such meteorological factors as average relative humidity from April to October > average vapor pressure from April to October > average temperature difference day and night from April to October > annual average temperature and so on. The correlation analysis between root biomass and meteorological factors exhibited that root shape and accumulation of dry matter were affected by those factors, such as average annual aboveground (0-20 cm) temperature from April to October > annual average temperature > average vapor pressure from April to October > annual active accumulated temperature > annual average temperature > average vapor pressure from April to October. The accumulation of tanshinones and biomass was increased with the decrease of latitude. At the same time, the dry matter and diameter of root decreased if altitude rises. In addition, S. miltiorrhiza required sunlight is not sophisticated, when compared with humid and temperature. To sum up, S

  15. Meristematic Activity during Adventitious Root Primordium Development

    PubMed Central

    Haissig, Bruce E.

    1972-01-01

    Intact brittle willows (Salix fragilis L.) were treated so that developing adventitious root primordia in the stems would be subjected to elevated gibberellic acid or reduced endogenous auxin levels. Observations were made of primordia that were initiated during the experiments and of primordia that were established before the experiments began. The results indicated that as primordia became older and contained more cells, auxin basipetally transported in the stem seemed to be of less importance in determining cell number per primordium. Thus, established primordia depended upon this auxin to a lesser extent than primordia which were being initiated. These observations were explained on the basis of differential contributions during primordium development of cell division in the cambium of the stem and in the primordia themselves. As opposed to the effects of reduced auxin levels, applied gibberellic acid reduced the cell number per primordium most in established primordia. Initiating primordia were least affected by gibberellic acid treatment. Gibberellic acid treatment seemed mainly to reduce intraprimordium cell division, on which continued development of established primordia most depends. Seemingly, at least in brittle willow, applied gibberellic acid blocks the action of auxin in primordium development subsequent to the initiation phase. PMID:16658077

  16. Effect of altering the root-zone temperature on growth, translocation, carbon exchange rate, and leaf starch accumulation in the tomato.

    PubMed

    Hurewitz, J; Janes, H W

    1983-09-01

    Tomato seedlings (Lycopersicon esculentum Mill. cv Vendor) were grown hydroponically with their root systems maintained at a constant temperature for a 2-week period commencing with the appearance of the first true leaf. Based on fresh and dry weight and leaf area, the optimal root-zone temperature for seedling growth was 30 degrees C. The carbon exchange rate of the leaves was also found to increase with rising root-zone temperature up to 30 degrees C. However, a more complex relationship seems to exist between root-zone temperature and the accumulation of (14)C-labeled assimilates in the roots; inasmuch as there is no enhancement in this accumulation at the most growth promoting root-zone temperatures (22-30 degrees C).

  17. Anti-estrogenic activity of lignans from Acanthopanax chiisanensis root.

    PubMed

    Lee, Sanghyun; Yoo, Hye Hyun; Piao, Xiang Lan; Kim, Ju Sun; Kang, Sam Sik; Shin, Kuk Hyun

    2005-02-01

    Anti-estrogenic activity of (-)-sesamin (1), helioxanthin (2), savinin (3), taiwanin C (4), and 3-(3,4-dimethoxybenzyl)-2-(3,4-methylenedioxybenzyl)butyrolactone (5) isolated from the root of Acanthopanax chiisanensis was tested using Ishikawa cells. Among them, compound 3 exhibited anti-estrogenic activity (IC50 = 4.86 microM).

  18. Anthelmintic activity of root bark of Carissa carandas.

    PubMed

    John, P P; Mazumder, Avijit; Mazumder, R; Bhatnagar, S P

    2007-07-01

    The anthelmintic activity of the Imethanolic extract of the root bark of Carissa carandas was evaluated on adult Indian earthworm (Pheretima posthuma) using albendazole as a reference standard. The extract caused paralysis followed by the death of worm at the tested dose level. The extract at the highest tested concentration has anthelmintic activity comparable with that of standard drug albendazole.

  19. Anthelmintic activity of root bark of Carissa carandas

    PubMed Central

    John, P.P.; Mazumder, Avijit; Mazumder, R.; Bhatnagar, S.P.

    2007-01-01

    The anthelmintic activity of the Imethanolic extract of the root bark of Carissa carandas was evaluated on adult Indian earthworm (Pheretima posthuma) using albendazole as a reference standard. The extract caused paralysis followed by the death of worm at the tested dose level. The extract at the highest tested concentration has anthelmintic activity comparable with that of standard drug albendazole. PMID:22557253

  20. Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone.

    PubMed

    Feng, Huan; Zhang, Weiguo; Qian, Yu; Liu, Wenliang; Yu, Lizhong; Yoo, Shinjae; Wang, Jun; Wang, Jia Jun; Eng, Christopher; Liu, Chang Jun; Tappero, Ryan

    2016-07-01

    This study investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn in Phragmites australis root system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils. Phragmites australis samples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in the root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis.

  1. Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone

    DOE PAGES

    Feng, Huan; Zhang, Weiguo; Qian, Yu; ...

    2016-06-15

    This paper investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn in Phragmites australis root system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils. Phragmites australis samples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in themore » root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis.« less

  2. Antifungal Activity and Composition of Essential Oils of Conyza canadensis Herbs and Roots

    PubMed Central

    Veres, Katalin; Csupor-Löffler, Boglárka; Lázár, Andrea; Hohmann, Judit

    2012-01-01

    Essential oils from herbs and roots of Conyza canadensis (horseweed), collected in Hungary, were obtained by hydrodistillation. The chemical compositions of the oils were analysed by combination of GC and GC/MS. The major constituent of the oil obtained from the aerial parts of horseweed was limonene (78%), while the main component of root oil was 2Z,8Z-matricaria ester. The antimicrobial activities of the oils were tested on Gram-positive (Enterococcus faecalis, Staphylococcus aureus, and Streptococcus pyogenes), Gram-negative (Escherichia coli, Pseudomonas aeruginosa) bacteria, reference fungal strains, and fungal strains isolated from patients (Candida, Cryptococcus, Trichophyton, Rhodotorula, and Aspergillus) by agar disc diffusion and broth dilution methods. None of the oils showed any activity against the tested bacterial strains, but exhibited moderate-to-strong activity against all fungi with the only exception of A. fumigatus. The highest zone of inhibition was observed in case of Cryptococcus neoformans and Trichophyton interdigitalis PMID:23049473

  3. Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions.

    PubMed

    Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

    2016-01-01

    The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea 'var. Chetoui') in a Tunisian grove were exposed to four treatments from May to October for three-years: 'control' plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; 'PRD100' were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; 'PRD50' were given 50% of ETc to half of the root-system, and; 'rain-fed' plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during 'off-years' may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the

  4. Improving Estimates of Root-zone Soil Water Content Using Soil Hydrologic Properties and Remotely Sensed Soil Moisture

    NASA Astrophysics Data System (ADS)

    Baldwin, D. C.; Miller, D. A.; Singha, K.; Davis, K. J.; Smithwick, E. A.

    2013-12-01

    Newly defined relationships between remotely sensed soil moisture and soil hydraulic parameters were used to develop fine-scale (100 m) maps of root-zone soil moisture (RZSM) content at the regional scale on a daily time-step. There are several key outcomes from our research: (1) the first multi-layer regional dataset of soil hydraulic parameters developed from gSSURGO data for hydrologic modeling efforts in the Chequemegon Ecosystem Atmospheric Study (ChEAS) region, (2) the operation and calibration of a new model for estimating soil moisture flow through the root-zone at eddy covariance towers across the U.S. using remotely sensed active and passive soil moisture products, and (3) region-wide maps of estimated root-zone soil moisture content. The project links soil geophysical analytical approaches (pedotransfer functions) to new applications in remote sensing of soil moisture that detect surface moisture (~5 cm depth). We answer two key questions in soil moisture observation and prediction: (1) How do soil hydrologic properties of U.S. soil types quantitatively relate to surface-to-subsurface water loss? And (2) Does incorporation of fine-scale soil hydrologic parameters with remotely sensed soil moisture data provide improved hindcasts of in situ RZSM content? The project meets several critical research needs in estimation of soil moisture from remote sensing. First, soil moisture is known to vary spatially with soil texture and soil hydraulic properties that do not align well with the spatial resolution of current remote sensing products of soil moisture (~ 50 km2). To address this, we leveraged new advances in gridded soil parameter information (gSSURGO) together with existing remotely sensed estimates of surface soil moisture into a newly emerging semi-empirical modeling approach called SMAR (Soil Moisture Analytical Relationship). The SMAR model was calibrated and cross-validated using existing soil moisture data from a portion of AMERIFLUX tower sites and

  5. Estimation of root zone storage capacity at the catchment scale using improved Mass Curve Technique

    NASA Astrophysics Data System (ADS)

    Zhao, Jie; Xu, Zongxue; Singh, Vijay P.

    2016-09-01

    The root zone storage capacity (Sr) greatly influences runoff generation, soil water movement, and vegetation growth and is hence an important variable for ecological and hydrological modelling. However, due to the great heterogeneity in soil texture and structure, there seems to be no effective approach to monitor or estimate Sr at the catchment scale presently. To fill the gap, in this study the Mass Curve Technique (MCT) was improved by incorporating a snowmelt module for the estimation of Sr at the catchment scale in different climatic regions. The ;range of perturbation; method was also used to generate different scenarios for determining the sensitivity of the improved MCT-derived Sr to its influencing factors after the evaluation of plausibility of Sr derived from the improved MCT. Results can be showed as: (i) Sr estimates of different catchments varied greatly from ∼10 mm to ∼200 mm with the changes of climatic conditions and underlying surface characteristics. (ii) The improved MCT is a simple but powerful tool for the Sr estimation in different climatic regions of China, and incorporation of more catchments into Sr comparisons can further improve our knowledge on the variability of Sr. (iii) Variation of Sr values is an integrated consequence of variations in rainfall, snowmelt water and evapotranspiration. Sr values are most sensitive to variations in evapotranspiration of ecosystems. Besides, Sr values with a longer return period are more stable than those with a shorter return period when affected by fluctuations in its influencing factors.

  6. High temperature effect on microflora of radish root-inhabited zone and nutrient solutions for radish growth

    NASA Astrophysics Data System (ADS)

    Borodina, E. V.; Tirranen, L. S.

    The effect of high temperatures (35 and 45 °C) on microflora of the root zone of radish plants grown in phytotron was evaluated by the response of microorganisms from 9 indicator groups. Phytotron air temperature elevated to 35 °C for 20 hours caused no significant changes in qualitative and quantitative composition of the root microflora in experimental plants. By the end of the experiment, the species diversity of microflora had changed. The amount of phytopathogenic microorganisms decreased which can be interpreted as more stable co-existence of microflora with plants. The numbers of microbes from other indicator groups was in dynamic equilibrium. The plants' condition did not deteriorate either. Exposure to the temperature of 45 °C for 7 hours have been found to change the numbers and species diversity in the radish root zone microflora. The microorganisms were observed to increase their total numbers at the expense of certain indicator groups. Bacteria increased spore forms at the stage of spores. Colon bacillus bacteria of increased their numbers by the end of experiment by an order. By the end of experiment the roots of experiment plants had microscopic fungi from Mucor, Aspergillus, Trichoderma, Cladosporium genera. The observed changes in the microbial complex seem to be associated with the changes of root emissions and general deterioration of the plants' condition. It is suggested that the response of the microorganisms can be indicative of the condition of plants under investigation.

  7. Exogenous glutathione improves high root-zone temperature tolerance by modulating photosynthesis, antioxidant and osmolytes systems in cucumber seedlings

    PubMed Central

    Ding, Xiaotao; Jiang, Yuping; He, Lizhong; Zhou, Qiang; Yu, Jizhu; Hui, Dafeng; Huang, Danfeng

    2016-01-01

    To investigate the physiological responses of plants to high root-zone temperature (HT, 35 °C) stress mitigated by exogenous glutathione (GSH), cucumber (Cucumis sativus L.) seedlings were exposed to HT with or without GSH treatment for 4 days and following with 4 days of recovery. Plant physiological variables, growth, and gene expression related to antioxidant enzymes and Calvin cycle were quantified. The results showed that HT significantly decreased GSH content, the ratio of reduced to oxidized glutathione (GSH/GSSG), chlorophyll content, photosynthesis and related gene expression, shoot height, stem diameter, as well as dry weight. The exogenous GSH treatment clearly lessened the HT stress by increasing the above variables. Meanwhile, HT significantly increased soluble protein content, proline and malondialdehyde (MDA) content as well as O2•− production rate, the gene expression and activities of antioxidant enzymes. The GSH treatment remarkably improved soluble protein content, proline content, antioxidant enzymes activities, and antioxidant enzymes related gene expression, and reduced the MDA content and O2•− production rate compared to no GSH treatment in the HT condition. Our results suggest that exogenous GSH enhances cucumber seedling tolerance of HT stress by modulating the photosynthesis, antioxidant and osmolytes systems to improve physiological adaptation. PMID:27752105

  8. Antistress, Adoptogenic Activity of Sida cordifolia Roots in Mice.

    PubMed

    Sumanth, Meera; Mustafa, S S

    2009-05-01

    Ethanol extract of roots of Sida cordifolia was evaluated for antistress, adaptogenic activity using cold restraint stress and swim endurance in mice. Mice pretreated with extract of Sida cordifolia showed significant improvement in the swim duration and reduced the elevated WBC, blood glucose and plasma cortisone.

  9. Factors affecting carbon-14 activity of unsaturated zone CO2 and implications for groundwater dating

    NASA Astrophysics Data System (ADS)

    Wood, Cameron; Cook, Peter G.; Harrington, Glenn A.; Meredith, Karina; Kipfer, Rolf

    2014-11-01

    Unsaturated zone processes may influence the carbon-14 (14C) activity of infiltrating groundwater and thus introduce error in derived groundwater residence times. However unsaturated zone 14C activities are rarely measured and there is little understanding of how they may vary spatially in a groundwater basin. In this study we measured 14C activity in unsaturated zone gas at five sites with different watertable depths (8.2-31.5 m) in the arid Ti Tree Basin, central Australia. We observed a relatively uniform decrease in 14C activity of unsaturated zone gas with depth at most sites, with variation in unsaturated zone depths leading to variation in 14C activities directly above the watertable at each site (ranging from 54 to 106 percent Modern Carbon (pMC)). Through modelling we show that the profiles are influenced by CO2 production at different depths from sources with different isotopic ratios, including production of ‘modern' CO2 in the root zone and production of ‘old' CO2 above the watertable. Scenario modelling showed that these processes are independent of recharge when recharge is low (0-10 mm y-1) but that higher recharge rates (>100 mm y-1) result in more advective transport of atmospheric CO2 to the watertable. The variation in 14C above the watertable was more sensitive to watertable depth and shallow and deep CO2 production rates. These findings offer insight into how unsaturated zone 14C activities may vary spatially and provide guidance as to when 14C depletion in unsaturated zone CO2 may become important for groundwater dating, particularly in arid settings.

  10. Effects of non-uniform root zone salinity on water use, Na+ recirculation, and Na+ and H+ flux in cotton.

    PubMed

    Kong, Xiangqiang; Luo, Zhen; Dong, Hezhong; Eneji, A Egrinya; Li, Weijiang

    2012-03-01

    A new split-root system was established through grafting to study cotton response to non-uniform salinity. Each root half was treated with either uniform (100/100 mM) or non-uniform NaCl concentrations (0/200 and 50/150 mM). In contrast to uniform control, non-uniform salinity treatment improved plant growth and water use, with more water absorbed from the non- and low salinity side. Non-uniform treatments decreased Na(+) concentrations in leaves. The [Na(+)] in the '0' side roots of the 0/200 treatment was significantly higher than that in either side of the 0/0 control, but greatly decreased when the '0' side phloem was girdled, suggesting that the increased [Na(+)] in the '0' side roots was possibly due to transportation of foliar Na(+) to roots through phloem. Plants under non-uniform salinity extruded more Na(+) from the root than those under uniform salinity. Root Na(+) efflux in the low salinity side was greatly enhanced by the higher salinity side. NaCl-induced Na(+) efflux and H(+) influx were inhibited by amiloride and sodium orthovanadate, suggesting that root Na(+) extrusion was probably due to active Na(+)/H(+) antiport across the plasma membrane. Improved plant growth under non-uniform salinity was thus attributed to increased water use, reduced leaf Na(+) concentration, transport of excessive foliar Na(+) to the low salinity side, and enhanced Na(+) efflux from the low salinity root.

  11. Simulation of carbonfuran and hexazinone movement into groundwater in central Florida using PRZM (Pesticide) Root Zone Model)

    SciTech Connect

    Neary, D.G.; Bush, P.B.; Smith, C.S.; Carsel, R.F.; Phillips, M.J.

    1985-01-01

    PRZM (Pesticide Root Zone Model) was developed to predict movement of pesticides within the plant root zone of soils and below to a depth of 7 m. The model, developed for surface-applied or soil incorporated pesticides, consists of 1) a hydrology component for calculating removal of precipitation by runoff, evapotranspiration, and crop interception, and 2) a chemical transport component for calculating uptake by plants, volatolization, decay, leaching, dispersion, concentration in runoff, retardation, soil solution and solid phase concentrations. Simulations were run for carbofuran, a moderately soluble, highly toxic carbamate insecticide, and hexazinone, a highly soluble, low toxicity triazine herbicide. Simulations and validation field experiments were done on forest sites with deep Typic Quartzipsamment soils overlying the Floridan Aquifer in Central Florida. Implications on use of predicting groundwater contamination and the risks of pesticide use are discussed.

  12. Long term follow-up results of dorsal root entry zone lesions for intractable pain after brachial plexus avulsion injuries.

    PubMed

    Chen, H J; Tu, Y K

    2006-01-01

    Brachial plexus avulsion injury is one of the major complications after traffic, especially motorcycle accidents and machine injuries. Intractable pain and paralysis of the affected limbs are the major neurological deficits. During the past 18 years, we have encountered and treated more than 500 cases with brachial plexus avulsion injuries. Dorsal root entry zone lesions (DREZ) made by thermocoagulation were performed for intractable pain in 60 cases. Forty cases were under regular follow-up for 5-18 years. In early postoperative stage, the pain relief rate was excellent or good in 32 cases (80%). The pain relief rate dropped to 60% in 5 year follow-up period and only 9 cases (50%) had excellent or good result in 10 year follow-up. Reconstructive procedures were performed in almost all patients in the last 10 years. Dorsal root entry zone lesion is an effective procedure for pain control after brachial plexus avulsion injuries.

  13. Root zone of the Late Proterozoic Salma Caldera, northeastern Arabian Shield, Kingdom of Saudi Arabia

    NASA Astrophysics Data System (ADS)

    Kellogg, Karl S.

    1985-11-01

    The eroded root of the late Proterozoic Salma caldera crops out in a striking, roughly elliptical feature, about 27 km long and 22 km wide, near the northeastern edge of the Arabian Shield. The caldera is genetically part of an elongate alkalic granitic massif (Jabal Salma) that extends 35 km from the caldera to the southwest. Comenditic ash flow tuff and lava(?) of the caldera fill, probably more than 1 km thick, are the oldest recognized rocks of the caldera complex. These rocks were erupted during caldera collapse associated with the rapid evacuation of the upper, mildly peralkalic part of a zoned magma reservoir. Within the caldera fill, a massive, lithic-rich intracaldera rhyolite, probably a lava in excess of 1 km thick, is overlain by a layered ash flow sequence. Numerous megabreccia blocks, probably derived from the caldera wall, occur in the massive rhyolite. Open folds in the layered volcanic rocks may be due to high-temperature slumping of the rocks toward the center of the caldera following collapse. Later peralkalic granite that intruded the caldera ring fracture zone occurs in an arcuate pattern outside the area of exposed caldera fill. After caldera collapse, metaluminous to peraluminous magma rose beneath the caldera at approximately 580 Ma and solidified as biotite alkali granite, rim syenogranite, and late, high-level granophyre. Rare earth element abundances indicate that the layered rhyolite tuff, peralkalic granite, and granophyre are chemically more evolved than the biotite alkali granite and rim syenogranite. The granophyre intruded the caldera fill as a dome-shaped body composed of numerous sheetlike masses. Granophyric texture resulted from rapid pressure release and quenching accompanying the intrusion of each sheet. Maximum penetration of the granophyre into overlying rocks occurred in the central region and along the west side of the caldera, where the caldera fill volcanic rocks have been removed by erosion. No apparent structural

  14. Long-term tillage and crop rotation effects on residual nitrate in the crop root zone and nitrate accumulation in the intermediate vadose zone

    USGS Publications Warehouse

    Katupitiya, A.; Eisenhauer, D.E.; Ferguson, R.B.; Spalding, R.F.; Roeth, F.W.; Bobier, M.W.

    1997-01-01

    Tillage influences the physical and biological environment of soil. Rotation of crops with a legume affects the soil N status. A furrow irrigated site was investigated for long-term tillage and crop rotation effects on leaching of nitrate from the root zone and accumulation in the intermediate vadose zone (IVZ). The investigated tillage systems were disk-plant (DP), ridge-till (RT) and slot-plant (SP). These tillage treatments have been maintained on the Hastings silt loam (Udic Argiustoll) and Crete silt loam (Pachic Argiustoll) soils since 1976. Continuous corn (CC) and corn soybean (CS) rotations were the subtreatments. Since 1984, soybeans have been grown in CS plots in even calendar years. All tillage treatments received the same N rate. The N rate varied annually depending on the root zone residual N. Soybeans were not fertilized with N-fertilizer. Samples for residual nitrate in the root zone were taken in 8 of the 15 year study while the IVZ was only sampled at the end of the study. In seven of eight years, root zone residual soil nitrate-N levels were greater with DP than RT and SP. Residual nitrate-N amounts were similar in RT and SP in all years. Despite high residual nitrate-N with DP and the same N application rate, crop yields were higher in RT and SP except when DP had an extremely high root zone nitrate level. By applying the same N rates on all tillage treatments, DP may have been fertilized in excess of crop need. Higher residual nitrate-N in DP was most likely due to a combination of increased mineralization with tillage and lower yield compared to RT and SP. Because of higher nitrate availability with DP, the potential for nitrate leaching from the root zone was greater with DP as compared to the RT and SP tillage systems. Spring residual nitrate-N contents of DP were larger than RT and SP in both crop rotations. Ridge till and SP systems had greater nitrate-N with CS than CC rotations. Nitrate accumulation in IVZ at the upstream end of the

  15. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

    USGS Publications Warehouse

    Bachand, P.A.M.; S. Bachand,; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

    2014-01-01

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal

  16. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone.

    PubMed

    Bachand, P A M; Bachand, S; Fleck, J; Anderson, F; Windham-Myers, L

    2014-06-15

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flow rates and tracer concentrations at wetland inflows and outflows. We used two ideal reactor model solutions, a continuous flow stirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these non-ideal agricultural wetlands in which check ponds are in series. Using a flux model, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment-water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemical mechanisms affecting dissolved constituent cycling in the root zone. In addition, our understanding of

  17. Temperature rise during photo-activated disinfection of root canals.

    PubMed

    Dickers, B; Lamard, L; Peremans, A; Geerts, S; Lamy, M; Limme, M; Rompen, E; De Moor, R J G; Mahler, P; Rocca, J P; Nammour, S

    2009-01-01

    The aim of this study was to determine whether it is safe to use photo-activated disinfection (PAD) during root canal treatment without heating the periodontal tissues. Root canals of 30 freshly extracted single-rooted teeth were prepared using ProFiles up to size ISO 40 and then filled with photo-sensitiser: tolonium blue (1.2 mg/l). The 635 nm diode laser was used with the manufacturer's endo-tip. Samples were irradiated for 150 s (output power 100 mW, approximate energy density 106.16 J/cm(2)). Temperatures were recorded at working length on the external root surface. After 150 s of PAD irradiation, the average temperature rise was 0.16 +/- 0.08 degrees C. All values were lower than the 7 degrees C safety level for periodontal injury. It was concluded that, regarding the temperature increase, the use of PAD in root canals could be considered harmless for periodontal tissues.

  18. Root zone water quality model (RZWQM2): Model use, calibration and validation

    USGS Publications Warehouse

    Ma, Liwang; Ahuja, Lajpat; Nolan, B.T.; Malone, Robert; Trout, Thomas; Qi, Z.

    2012-01-01

    The Root Zone Water Quality Model (RZWQM2) has been used widely for simulating agricultural management effects on crop production and soil and water quality. Although it is a one-dimensional model, it has many desirable features for the modeling community. This article outlines the principles of calibrating the model component by component with one or more datasets and validating the model with independent datasets. Users should consult the RZWQM2 user manual distributed along with the model and a more detailed protocol on how to calibrate RZWQM2 provided in a book chapter. Two case studies (or examples) are included in this article. One is from an irrigated maize study in Colorado to illustrate the use of field and laboratory measured soil hydraulic properties on simulated soil water and crop production. It also demonstrates the interaction between soil and plant parameters in simulated plant responses to water stresses. The other is from a maize-soybean rotation study in Iowa to show a manual calibration of the model for crop yield, soil water, and N leaching in tile-drained soils. Although the commonly used trial-and-error calibration method works well for experienced users, as shown in the second example, an automated calibration procedure is more objective, as shown in the first example. Furthermore, the incorporation of the Parameter Estimation Software (PEST) into RZWQM2 made the calibration of the model more efficient than a grid (ordered) search of model parameters. In addition, PEST provides sensitivity and uncertainty analyses that should help users in selecting the right parameters to calibrate.

  19. Mapping Seasonal Evapotranspiration and Root Zone Soil Moisture using a Hybrid Modeling Approach over Vineyards

    NASA Astrophysics Data System (ADS)

    Geli, H. M. E.

    2015-12-01

    Estimates of actual crop evapotranspiration (ETa) at field scale over the growing season are required for improving agricultural water management, particularly in water limited and drought prone regions. Remote sensing data from multiple platforms such as airborne and Landsat-based sensors can be used to provide these estimates. Combining these data with surface energy balance models can provide ETa estimates at sub- field scale as well as information on vegetation stress and soil moisture conditions. However, the temporal resolution of airborne and Landsat data does not allow for a continuous ETa monitoring over the course of the growing season. This study presents the application of a hybrid ETa modeling approach developed for monitoring daily ETa and root zone available water at high spatial resolutions. The hybrid ETa modeling approach couples a thermal-based energy balance model with a water balance-based scheme using data assimilation. The two source energy balance (TSEB) model is used to estimate instantaneous ETa which can be extrapolated to daily ETa using a water balance model modified to use the reflectance-based basal crop coefficient for interpolating ETa in between airborne and/or Landsat overpass dates. Moreover, since it is a water balance model, the soil moisture profile is also estimated. The hybrid ETa approach is applied over vineyard fields in central California. High resolution airborne and Landsat imagery were used to drive the hybrid model. These images were collected during periods that represented different vine phonological stages in 2013 growing season. Estimates of daily ETa and surface energy balance fluxes will be compared with ground-based eddy covariance tower measurements. Estimates of soil moisture at multiple depths will be compared with measurements.

  20. Is tile drainage water representative of root zone leaching of pesticides?

    PubMed

    Jacobsen, Ole H; Kjaer, Jeanne

    2007-05-01

    Given the methods presently available, determination of flux-averaged concentrations of pesticides in structured soils is always a compromise. Most of the available methods entail major uncertainties and limitations. Tile drainage monitoring has several advantages, but the extent to which it is representative of overall leaching has been questioned because it comprises a mixture of water of different origins. This literature review evaluates whether drainage water pesticide concentrations are representative of root zone leaching of pesticides. As there are no reports quantifying the extent to which the flux-averaged concentration of pesticides in drainage water differs from that found between the drains, evidence-based conclusions cannot be drawn. Nevertheless, the existing literature does suggest that the concentration in drainage water does not always correspond to the concentration at drain depth between the drains; depending on the conditions pertaining, the concentrations may be higher or lower. As to whether the flux-averaged concentration of pesticides in drainage water is representative of the interdrain concentration at drain depth it is concluded that (1) the representativeness of drainage water concentrations can be questioned on very well-drained soils and on poorly drained soils with little capacity for lateral transport beneath the plough layer, (2) the conditions provided by relatively porous soils and moderate climatic conditions are conducive to the drainage water concentration being representative and (3) drainage water will be more representative in the case of weakly sorbed pesticides than for strongly sorbed pesticides. Used critically, it is thus believed that drainage water concentrations can serve to characterize the flux-averaged concentration of pesticides at drain depth. However, the use of drainage water for determining average concentrations necessitates thorough investigation and interpretation of precipitation, percolation, drain

  1. Monoterpene derivatives with anti-allergic activity from red peony root, the root of Paeonia lactiflora.

    PubMed

    Shi, Yan-Hong; Zhu, Shu; Ge, Yue-Wei; He, Yu-Min; Kazuma, Kohei; Wang, Zhengtao; Yoshimatsu, Kayo; Komatsu, Katsuko

    2016-01-01

    The methanolic extract and its subfractions from red peony root, the dried roots of Paeonia lactiflora Pallas showed potent antiallergic effects, as inhibition of immunoglobulin E (IgE)-mediated degranulation in rat basophil leukemia (RBL)-2H3 cells. Bioassay-guided fractionation led to the isolation of 16 monoterpene derivatives, including 3 new compounds, paeoniflorol (1), 4'-hydroxypaeoniflorigenone (2) and 4-epi-albiflorin (3), together with 13 known ones (4-16). The chemical structures of the new compounds were elucidated on the basis of spectroscopic and chemical evidences. Among the isolated monoterpene derivatives, nine compounds showed potent anti-allergic effects and compound 1 was the most effective. A primary structure-activity relationship of monoterpene derivatives was discussed.

  2. Alkaloids from roots of Stemona sessilifolia and their antitussive activities.

    PubMed

    Yang, Xin-Zhou; Zhu, Jian-Yu; Tang, Chun-Ping; Ke, Chang-Qiang; Lin, Ge; Cheng, Tin-Yan; Rudd, John A; Ye, Yang

    2009-02-01

    Protostemonamide ( 1), a new protostemonine-type alkaloid, and 12 known compounds were isolated from the roots of Stemona sessilifolia. Their structures were elucidated by 1 D and 2 D NMR spectral and other spectroscopic studies. The main alkaloidal constituents, protostemonine ( 2), stemospironine ( 4), and maistemonine ( 7), showed significant antitussive activity in a citric acid-induced guinea pig cough model following peripheral administration; stemonamine ( 11) had antitussive activity following i. c. v. administration.

  3. Tomato growth as affected by root-zone temperature and the addition of gibberellic acid and kinetin to nutrient solutions

    NASA Technical Reports Server (NTRS)

    Bugbee, B.; White, J. W.; Salisbury, F. B. (Principal Investigator)

    1984-01-01

    The effect of root-zone temperature on young tomato plants (Lycopersicon esculentum Mill. cv. Heinz 1350) was evaluated in controlled environments using a recirculating solution culture system. Growth rates were measured at root-zone temperatures of 15 degrees, 20 degrees, 25 degrees, and 30 degrees C in a near optimum foliar environment. Optimum growth occurred at 25 degrees to 30 degrees during the first 4 weeks of growth and 20 degrees to 25 degrees during the 5th and 6th weeks. Growth was severely restricted at 15 degrees. Four concentrations of gibberellic acid (GA3) and kinetin were added to the nutrient solution in a separate trial; root-zone temperature was maintained at 15 degrees and 25 degrees. Addition of 15 micromoles GA3 to solutions increased specific leaf area, total leaf area, and dry weight production of plants in both temperature treatments. GA3-induced growth stimulation was greater at 15 degrees than at 25 degrees. GA3 may promote growth by increasing leaf area, enhancing photosynthesis per unit leaf area, or both. Kinetic was not useful in promoting growth at either temperature.

  4. Soil organic matter and salinity affect copper bioavailability in root zone and uptake by Vicia faba L. plants.

    PubMed

    Matijevic, Lana; Romic, Davor; Romic, Marija

    2014-10-01

    Processes that control the mobility, transformation and toxicity of metals in soil are of special importance in the root-developing zone. For this reason, there is a considerable interest in understanding trace elements (TEs) behavior in soil, emphasising the processes by which plants take them up. Increased root-zone salinity can affect plant TEs uptake and accumulation in plant tissue. Furthermore, copper (Cu) complexation by soil organic matter (SOM) is an effective mechanism of Cu retention in soils, controlling thus its bioavailability. Therefore, a greenhouse pot experiment was conducted to study the effects of soil Cu contamination in a saline environment on faba bean (Vicia faba L.) element uptake. Treatment with NaCl salinity was applied (control, 50 mM NaCl and 100 mM NaCl) on faba bean plants grown in a control and in a soil spiked with Cu (250 and 500 mg kg(-1)). Low and high SOM content trial variants were studied. Cu accumulation occurred in faba bean leaf, pod and seed. Cu contamination affected plant element concentrations in leaves (Na, Ca, Mg, Mn), pod (Zn, Mn) and seed (Mn, Mo, Zn). Root-zone salinity also affected faba bean element concentrations. Furthermore, Cu contamination-salinity and salinity-SOM interactions were significant for pod Cu concentration, suggesting that Cu phytoavailability could be affected by these interactions. Future research will be focused on the mechanisms of Cu translocation in plant and adaptation aspects of abiotic stress.

  5. Cell-Type-Specific H+-ATPase Activity in Root Tissues Enables K+ Retention and Mediates Acclimation of Barley (Hordeum vulgare) to Salinity Stress1[OPEN

    PubMed Central

    Zhang, Jingyi; Pottosin, Igor; Bose, Jayakumar; Zhu, Min; Velarde-Buendia, Ana; Massart, Amandine; Azzarello, Elisa; Shabala, Sergey

    2016-01-01

    While the importance of cell type specificity in plant adaptive responses is widely accepted, only a limited number of studies have addressed this issue at the functional level. We have combined electrophysiological, imaging, and biochemical techniques to reveal the physiological mechanisms conferring higher sensitivity of apical root cells to salinity in barley (Hordeum vulgare). We show that salinity application to the root apex arrests root growth in a highly tissue- and treatment-specific manner. Although salinity-induced transient net Na+ uptake was about 4-fold higher in the root apex compared with the mature zone, mature root cells accumulated more cytosolic and vacuolar Na+, suggesting that the higher sensitivity of apical cells to salt is not related to either enhanced Na+ exclusion or sequestration inside the root. Rather, the above differential sensitivity between the two zones originates from a 10-fold difference in K+ efflux between the mature zone and the apical region (much poorer in the root apex) of the root. Major factors contributing to this poor K+ retention ability are (1) an intrinsically lower H+-ATPase activity in the root apex, (2) greater salt-induced membrane depolarization, and (3) a higher reactive oxygen species production under NaCl and a larger density of reactive oxygen species-activated cation currents in the apex. Salinity treatment increased (2- to 5-fold) the content of 10 (out of 25 detected) amino acids in the root apex but not in the mature zone and changed the organic acid and sugar contents. The causal link between the observed changes in the root metabolic profile and the regulation of transporter activity is discussed. PMID:27770060

  6. Cell-Type-Specific H+-ATPase Activity in Root Tissues Enables K+ Retention and Mediates Acclimation of Barley (Hordeum vulgare) to Salinity Stress.

    PubMed

    Shabala, Lana; Zhang, Jingyi; Pottosin, Igor; Bose, Jayakumar; Zhu, Min; Fuglsang, Anja Thoe; Velarde-Buendia, Ana; Massart, Amandine; Hill, Camilla Beate; Roessner, Ute; Bacic, Antony; Wu, Honghong; Azzarello, Elisa; Pandolfi, Camilla; Zhou, Meixue; Poschenrieder, Charlotte; Mancuso, Stefano; Shabala, Sergey

    2016-12-01

    While the importance of cell type specificity in plant adaptive responses is widely accepted, only a limited number of studies have addressed this issue at the functional level. We have combined electrophysiological, imaging, and biochemical techniques to reveal the physiological mechanisms conferring higher sensitivity of apical root cells to salinity in barley (Hordeum vulgare). We show that salinity application to the root apex arrests root growth in a highly tissue- and treatment-specific manner. Although salinity-induced transient net Na(+) uptake was about 4-fold higher in the root apex compared with the mature zone, mature root cells accumulated more cytosolic and vacuolar Na(+), suggesting that the higher sensitivity of apical cells to salt is not related to either enhanced Na(+) exclusion or sequestration inside the root. Rather, the above differential sensitivity between the two zones originates from a 10-fold difference in K(+) efflux between the mature zone and the apical region (much poorer in the root apex) of the root. Major factors contributing to this poor K(+) retention ability are (1) an intrinsically lower H(+)-ATPase activity in the root apex, (2) greater salt-induced membrane depolarization, and (3) a higher reactive oxygen species production under NaCl and a larger density of reactive oxygen species-activated cation currents in the apex. Salinity treatment increased (2- to 5-fold) the content of 10 (out of 25 detected) amino acids in the root apex but not in the mature zone and changed the organic acid and sugar contents. The causal link between the observed changes in the root metabolic profile and the regulation of transporter activity is discussed.

  7. Predicting root zone soil moisture with soil properties and satellite near-surface moisture data across the conterminous United States

    NASA Astrophysics Data System (ADS)

    Baldwin, D.; Manfreda, S.; Keller, K.; Smithwick, E. A. H.

    2017-03-01

    Satellite-based near-surface (0-2 cm) soil moisture estimates have global coverage, but do not capture variations of soil moisture in the root zone (up to 100 cm depth) and may be biased with respect to ground-based soil moisture measurements. Here, we present an ensemble Kalman filter (EnKF) hydrologic data assimilation system that predicts bias in satellite soil moisture data to support the physically based Soil Moisture Analytical Relationship (SMAR) infiltration model, which estimates root zone soil moisture with satellite soil moisture data. The SMAR-EnKF model estimates a regional-scale bias parameter using available in situ data. The regional bias parameter is added to satellite soil moisture retrievals before their use in the SMAR model, and the bias parameter is updated continuously over time with the EnKF algorithm. In this study, the SMAR-EnKF assimilates in situ soil moisture at 43 Soil Climate Analysis Network (SCAN) monitoring locations across the conterminous U.S. Multivariate regression models are developed to estimate SMAR parameters using soil physical properties and the moderate resolution imaging spectroradiometer (MODIS) evapotranspiration data product as covariates. SMAR-EnKF root zone soil moisture predictions are in relatively close agreement with in situ observations when using optimal model parameters, with root mean square errors averaging 0.051 [cm3 cm-3] (standard error, s.e. = 0.005). The average root mean square error associated with a 20-fold cross-validation analysis with permuted SMAR parameter regression models increases moderately (0.082 [cm3 cm-3], s.e. = 0.004). The expected regional-scale satellite correction bias is negative in four out of six ecoregions studied (mean = -0.12 [-], s.e. = 0.002), excluding the Great Plains and Eastern Temperate Forests (0.053 [-], s.e. = 0.001). With its capability of estimating regional-scale satellite bias, the SMAR-EnKF system can predict root zone soil moisture over broad extents and has

  8. Specific features of the recent accumulation of 137Cs in tree roots of forest ecosystems within the zone of radioactive contamination

    NASA Astrophysics Data System (ADS)

    Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey; Popova, Evgenia

    2015-04-01

    Despite numerous studies of the accumulation of technogenic radionuclides in the root systems, no clear regularities of this process have been established. The tendencies found in the works of Russian and foreign researchers are rather discrepant. Some authors argue that the accumulation of radionuclides in the roots is more pronounced than that in the aboveground parts of the plants (Skovorodnikova, 2005; Romantseva, 2012; Sennerby et al., 1994; Mamikhin, 2002; Fircks et al., 2002}. Other works attest to a higher accumulation of radionuclides in the aboveground pars (Juznic et al., 1990; Chibowski, 2000; Zhianski et al., 2005), which is also typical of the stable isotopes of these elements, including 133Cs (Dong Jin Kang, YongJin Seo, Tsukasa Saito et al,2012). It is also stated that the accumulation of radionuclides in the aboveground and underground parts of plants may differ in dependence on the soil-ecological conditions and other factors (Kozhakhanov et al., 2011; Grabovskyi et al., 2013). The aim of our study was to evaluate the accumulation of 137Cs in the root systems of arboreal plants in forest ecosystems within the near zone of the Chernobyl fallout on the plots with similar soil and phytocenotic features. Pine and birch stands were studied within the 30-km-wide exclusion zone of the Chernobyl Nuclear Power Station in Ukraine in 1992-1993, when the density of the radioactive contamination of the upper (0-20 cm) layer with 137Cs reached 2153.8 kBq/m2), and in Bryansk oblast of Russia in 2013-2014, when the density of contamination varied from 1458.4 kBq/m2 (pine stand) to 2578.3 kBq/m2 (birch stand). The tree layer in these ecosystems was dominated by Pinus sylvestris (L.) and Betula pendula (Roth.), respectively. Quercus robur (L.), Picea abies (L.), and Sorbus aucuparia (L.) were also present. The specific activity of 137Cs was measured in the samples from the aboveground parts of model trees and their roots differentiated by size (0-3, 3-10, 10

  9. Improving root-zone soil properties for Trembling Aspen in a reconstructed mine-site soil

    NASA Astrophysics Data System (ADS)

    Dyck, M. F.; Sabbagh, P.; Bockstette, S.; Landhäusser, S.; Pinno, B.

    2014-12-01

    Surface mining activities have significantly depleted natural tree cover, especially trembling aspen (Populus tremuloides), in the Boreal Forest and Aspen Parkland Natural Regions of Alberta. The natural soil profile is usually destroyed during these mining activities and soil and landscape reconstruction is typically the first step in the reclamation process. However, the mine tailings and overburden materials used for these new soils often become compacted during the reconstruction process because they are subjected to high amounts of traffic with heavy equipment. Compacted soils generally have low porosity and low penetrability through increased soil strength, making it difficult for roots to elongate and explore the soil. Compaction also reduces infiltration capacity and drainage, which can cause excessive runoff and soil erosion. To improve the pore size distribution and water transmission, subsoil ripping was carried out in a test plot at Genesee Prairie Mine, Alberta. Within the site, six replicates with two treatments each, unripped (compacted) and ripped (decompacted), were established with 20-m buffers between them. The main objective of this research was to characterize the effects of subsoil ripping on soil physical properties and the longevity of those effects.as well as soil water dynamics during spring snowmelt. Results showed improved bulk density, pore size distribution and water infiltration in the soil as a result of the deep ripping, but these improvements appear to be temporary.

  10. Activated carbon from vetiver roots: gas and liquid adsorption studies.

    PubMed

    Gaspard, S; Altenor, S; Dawson, E A; Barnes, P A; Ouensanga, A

    2007-06-01

    Large quantities of lignocellulosic residues result from the industrial production of essential oil from vetiver grass (Vetiveria zizanioides) roots. These residues could be used for the production of activated carbon. The yield of char obtained after vetiver roots pyrolysis follows an equation recently developed [A. Ouensanga, L. Largitte, M.A. Arsene, The dependence of char yield on the amounts of components in precursors for pyrolysed tropical fruit stones and seeds, Micropor. Mesopor. Mater. 59 (2003) 85-91]. The N(2) adsorption isotherm follows either the Freundlich law K(F)P(alpha) which is the small alpha equation limit of a Weibull shaped isotherm or the classical BET isotherm. The surface area of the activated carbons are determined using the BET method. The K(F) value is proportional to the BET surface area. The alpha value increases slightly when the burn-off increases and also when there is a clear increase in the micropore distribution width.

  11. Neuropathic Pain Post Spinal Cord Injury Part 2: Systematic Review of Dorsal Root Entry Zone Procedure

    PubMed Central

    2013-01-01

    Background: Pharmacotherapy may not sufficiently reduce neuropathic pain in many individuals post spinal cord injury (SCI). The use of alternative therapies such as surgery may be effective in reducing neuropathic pain in these individuals. However, because of the invasive nature of surgery, it is important to examine the evidence for use of this treatment. Objective: The purpose of this study was to conduct a systematic review of published literature on the surgical treatment of neuropathic pain after SCI. Methods: MEDLINE, CINAHL, EMBASE, and PsycINFO databases were searched for articles in which surgical treatment of pain after SCI was examined. Articles were restricted to the English language. Article selection was conducted by 2 independent reviewers with the following inclusion criteria: the subjects participated in a surgical intervention for neuropathic pain; at least 50% of the subjects had an SCI; at least 3 subjects had an SCI; and a definable intervention involving the dorsal root entry zone (DREZ) procedure was used to reduce pain. Data extracted included study design, study type, subject demographics, inclusion and exclusion criteria, sample size, outcome measures, and study results. Randomized controlled trials (RCTs) were assessed for quality using the Physiotherapy Evidence Database (PEDro) assessment scale. Levels of evidence were assigned to each intervention using a modified Sackett scale. Results: Eleven studies met the inclusion criteria. One study provided level 2 evidence, and the rest provided level 4 evidence. The DREZ procedure was shown to be more effective for segmental pain than for diffuse pain after SCI. Further, individuals with conus medullaris level injury were found to have a higher level of neuropathic pain relief than those with cervical, thoracic, or cauda equina injury. Conclusions: The studies demonstrated that the DREZ procedure may be effective in reducing segmental pain. Hence, DREZ may be important in treatment of

  12. GLEAM v3: updated land evaporation and root-zone soil moisture datasets

    NASA Astrophysics Data System (ADS)

    Martens, Brecht; Miralles, Diego; Lievens, Hans; van der Schalie, Robin; de Jeu, Richard; Fernández-Prieto, Diego; Verhoest, Niko

    2016-04-01

    Evaporation determines the availability of surface water resources and the requirements for irrigation. In addition, through its impacts on the water, carbon and energy budgets, evaporation influences the occurrence of rainfall and the dynamics of air temperature. Therefore, reliable estimates of this flux at regional to global scales are of major importance for water management and meteorological forecasting of extreme events. However, the global-scale magnitude and variability of the flux, and the sensitivity of the underlying physical process to changes in environmental factors, are still poorly understood due to the limited global coverage of in situ measurements. Remote sensing techniques can help to overcome the lack of ground data. However, evaporation is not directly observable from satellite systems. As a result, recent efforts have focussed on combining the observable drivers of evaporation within process-based models. The Global Land Evaporation Amsterdam Model (GLEAM, www.gleam.eu) estimates terrestrial evaporation based on daily satellite observations of meteorological drivers of terrestrial evaporation, vegetation characteristics and soil moisture. Since the publication of the first version of the model in 2011, GLEAM has been widely applied for the study of trends in the water cycle, interactions between land and atmosphere and hydrometeorological extreme events. A third version of the GLEAM global datasets will be available from the beginning of 2016 and will be distributed using www.gleam.eu as gateway. The updated datasets include separate estimates for the different components of the evaporative flux (i.e. transpiration, bare-soil evaporation, interception loss, open-water evaporation and snow sublimation), as well as variables like the evaporative stress, potential evaporation, root-zone soil moisture and surface soil moisture. A new dataset using SMOS-based input data of surface soil moisture and vegetation optical depth will also be

  13. Antimicrobial activity of extracts of Terminalia catappa root.

    PubMed

    Pawar, S P; Pal, S C

    2002-06-01

    The effect against bacteria of petroleum ether (60-80 degrees C), chloroform and methanolic extract of dried root of Terminalia catappa Linn. (combrataceae) was employed by cup plate agar diffusion method. The chloroform extract showed prominent antimicrobial activity against S. aureus and E. coli as compared to other tested microorganisms, while petroleum ether extract was devoid of antimicrobial activity. The methanolic: extract exhibited MIC of 0.065 mg/ml against E. coli. and chloroform extract exhibited MIC of 0.4 mg/ml against S. aureus The chloroform has well as methanolic extracts showed good antimicrobial activity against Gram positive and Gram negative microorganisms.

  14. Lessons Learned From Large-Scale Evapotranspiration and Root Zone Soil Moisture Mapping Using Ground Measurements (meteorological, LAS, EC) and Remote Sensing (METRIC)

    NASA Astrophysics Data System (ADS)

    Hendrickx, J. M. H.; Allen, R. G.; Myint, S. W.; Ogden, F. L.

    2015-12-01

    Large scale mapping of evapotranspiration and root zone soil moisture is only possible when satellite images are used. The spatial resolution of this imagery typically depends on its temporal resolution or the satellite overpass time. For example, the Landsat satellite acquires images at 30 m resolution every 16 days while the MODIS satellite acquires images at 250 m resolution every day. In this study we deal with optical/thermal imagery that is impacted by cloudiness contrary to radar imagery that penetrates through clouds. Due to cloudiness, the temporal resolution of Landsat drops from 16 days to about one clear sky Landsat image per month in the southwestern USA and about one every ten years in the humid tropics of Panama. Only by launching additional satellites can the temporal resolution be improved. Since this is too costly, an alternative is found by using ground measurements with high temporal resolution (from minutes to days) but poor spatial resolution. The challenge for large-scale evapotranspiration and root zone soil moisture mapping is to construct a layer stack consisting of N time layers covering the period of interest each containing M pixels covering the region of interest. We will present examples of the Phoenix Active Management Area in AZ (14,600 km2), Green River Basin in WY (44,000 km2), the Kishwaukee Watershed in IL (3,150 km2), the area covered by Landsat Path 28/Row 35 in OK (30,000 km2) and the Agua Salud Watershed in Panama (200 km2). In these regions we used Landsat or MODIS imagery for mapping evapotranspiration and root zone soil moisture by the algorithm Mapping EvapoTranspiration at high Resolution with Internalized Calibration (METRIC) together with meteorological measurements and sometimes either Large Aperture Scintillometers (LAS) or Eddy Covariance (EC). We conclude with lessons learned for future large-scale hydrological studies.

  15. Responses of Leaf-level Carbon Assimilation and Transpiration to Root-zone Water Potential Changes in a Subtropical Tree Species

    NASA Astrophysics Data System (ADS)

    Cicheng, Z.; Guan, H.; Han, G.; Zhang, X.

    2013-12-01

    Photosynthetic carbon assimilation in terrestrial ecosystems significantly contributes to global carbon balance in the atmosphere. While vegetation photosynthesizes to fix CO2, it simultaneously transpires H2O. These two interdependent processes are regulated by leaf stomata which are sensitive to environmental conditions (such as root zone soil moisture). Knowledge of the responses of leaf-level transpiration and carbon assimilation to a change of root-zone soil moisture condition is important to understand how these processes influence water balance and carbon sequestration in terrestrial ecosystems, and to understand the capacity of trees to cope with future climate changes.We will present the results of a one-year observational study on a subtropical evergreen broadleaf tree species (Osmanthus fragrans) in the central south China. The observations were carried out on two 8-year Osmanthus fragrans trees in a plantation site from 1 Sep, 2012 to 31 Aug, 2013. A portable infrared gas exchange analyzer (Li-6400, Li-COR, Inc., Lincoln, Nebraska, USA) was used to measure leaf photosynthesis and leaf transpiration on clear days. Root zone soil water potential was estimated from predawn stem water potential using stem psychrometers (ICT, Australia). Sap flow and micrometeorological data were also collected. The results show that the average leaf carbon assimilation rate at light saturation decreases quickly with the root zone water potential from 0 to -1 MPa, and slowly after the root zone water potential falls below -1 MPa. The average leaf transpiration at light saturation shows a similar pattern. Leaf-level water use efficiency increases slowly with a decrease of root-zone water potential from 0 to -1 MPa, and keeps constant when the root zone gets drier. This relationship provides a potential to estimate whole-tree carbon assimilation from sap flow measurements. Leaf assimilation rates at light saturation in early morning vs. root-zone water potential for Osmanthus

  16. Xyloglucan endotransglucosylase action is high in the root elongation zone and in the trichoblasts of all vascular plants from Selaginella to Zea mays.

    PubMed

    Vissenberg, K; Van Sandt, V; Fry, S C; Verbelen, J-P

    2003-01-01

    The endotransglucosylase action of the enzyme xyloglucan endotransglucosylase/hydrolase (XTH) was localized in the roots of diverse vascular plants: club-mosses (lycopodiophytes), ferns, gymnosperms, monocots, and dicots. High action was always found in the epidermis cell wall of the elongation zone and in trichoblasts in the differentiation zone. Clearly XTH and its action in root development evolved before the evolutionary divergence of ferns and seed plants and also of the lycopodiophytes and euphyllophytes.

  17. Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions

    PubMed Central

    Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

    2016-01-01

    The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea ‘var. Chetoui’) in a Tunisian grove were exposed to four treatments from May to October for three-years: ‘control’ plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; ‘PRD100’ were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; ‘PRD50’ were given 50% of ETc to half of the root-system, and; ‘rain-fed’ plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during ‘off-years’ may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation

  18. Plant roots can actively regulate hydraulic redistribution by modifying the hydraulic properties of the rhizosphere using exudates

    NASA Astrophysics Data System (ADS)

    Ghezzehei, Teamrat; Bogie, Nathaniel; Albalasmeh, Ammar

    2015-04-01

    The phenomenon of hydraulic lift by roots of plants has been observed in many arid and semi-arid regions. The process involves water transfer from moist deep soil zone to shallow and dry layers, typically at night when transpiration is shut off. The widely held explanation is that hydraulic lift receives the strong water potential gradient created during the day when the plants are actively transpiring. However, it is not fully understood whether hydraulic lift is actively controlled by plants or it is a spontaneous response to the occurrence of pressure gradient. Here, we will present modeling study that demonstrates that plant roots can exert significant control on hydraulic redistribution via exudation and formation of rhizospheath. The model is based on results of potted experiments conducted by Nambiar in 1976 (Plant and Soil, 44:267-271), which have shown that plants are able to acquire essential micronutrients from very dry soil so long as water is available to the root system in sufficient quantity elsewhere. He also observed that the roots in the water-depleted zones exhibited evidence of substantial root exudation, which suggests that exudates are needed in order to provide moisture for mobilization and diffusion of nutrients in the dry regions. In addition, our own recent model-based research demonstrated that exudates play important role in facilitating water flow in otherwise dry rhizosphere region. Our models show that exudates facilitate the release of hydraulically lifted water to the rhizosphere by ensuring hydraulic continuity between the root walls and the surrounding dry soil. In addition, the high water retention capacity of root exudates permits the hydraulic conductivity to remain elevated even at low potential conditions. The results of this modeling study suggest that hydraulic lift is an actively controlled adaptation mechanism that allows plants to remain active during long dry spells by acquiring nutrients from the dry near surface soils

  19. HEAT AND MASS TRANSFER IN THE VADOSE ZONE WITH PLANT ROOTS. (R825414)

    EPA Science Inventory

    Abstract

    The vadose zone is the intermediate medium between the atmosphere and groundwater. The modeling of the processes taking place in the vadose zone needs different approaches to those needed for groundwater transport problems because of the marked changes in envi...

  20. Evidence for Neotethys rooted within the Vardar suture zone from the Voras Massif, northernmost Greece

    NASA Astrophysics Data System (ADS)

    Brown, Sally A. M.; Robertson, Alastair H. F.

    2004-03-01

    Three conflicting models are currently proposed for the location and tectonic setting of the Eurasian continental margin and adjacent Tethys ocean in the Balkan region during Mesozoic-Early Tertiary time. Model 1 places the Eurasian margin within the Rhodope zone relatively close to the Moesian platform. A Tethyan oceanic basin was located to the south bordering a large "Serbo-Pelagonian" microcontinent. Model 2 correlates an integral "Serbo-Pelagonian" continental unit with the Eurasian margin and locates the Tethys further southwest. Model 3 envisages the Pelagonian zone and the Serbo-Macedonian zone as conjugate continental units separated by a Tethyan ocean that was sutured in Early Tertiary time to create the Vardar zone of northern Greece and former Yugoslavia. These published alternatives are tested in this paper based on a study of the tectono-stratigraphy of a completely exposed transect located in the Voras Mountains of northernmost Greece. The outcrop extends across the Vardar zone, from the Pelagonian zone in the west to the Serbo-Macedonian zone in the east. Within the Voras Massif, six east-dipping imbricate thrust sheets are recognised. Of these, Units 1-4 correlate with the regional Pelagonian zone in the west (and related Almopias sub-zone). By contrast, Units 5-6 show a contrasting tectono-stratigraphy and correlate with the Paikon Massif and the Serbo-Macedonian zone to the east. These units form a stack of thrust sheets, with Unit 1 at the base and Unit 6 at the top. Unstacking these thrust sheets places ophiolitic units between the Pelagonian zone and the Serbo-Macedonian zone, as in Model 3. Additional implications are, first, that the Paikon Massif cannot be seen as a window of Pelagonian basement, as in Model 1, and, secondly, Jurassic andesitic volcanics of the Paikon Massif locally preserve a gneissose continental basement, ruling out a recently suggested origin as an intra-oceanic arc. We envisage that the Almopias (Vardar) ocean rifted

  1. Effect of ammonium sulfate, ammonium chloride and root-zone acidity on inorganic ion content of tobacco

    NASA Technical Reports Server (NTRS)

    Vessey, J. K.; Raper, C. D. Jr; Henry, L. T.; Raper CD, J. r. (Principal Investigator)

    1990-01-01

    Tobacco plants (Nicotiana tabacum L. cv NC82) were supplied with (NH4)2SO4 or NH4Cl at root-zone pH of 6.0 and 4.5 in hydroponic culture for 28 days. Dry matter accumulation, total N and C content, and leaf area and number were not affected by the NH4+ source or root-zone pH. Plants supplied with NH4Cl accumulated up to 1.2 mM Cl g DW-1, but accumulated 37% less inorganic H2PO4- and 47% less SO4(2-) than plants supplied with (NH4)2SO4. The large Cl- accumulation resulted in NH4Cl- supplied plants having a 31% higher inorganic anion (NO3-, H2, PO4-, SO4(2-), and Cl-) charge. This higher inorganic anion charge in the NH4Cl-supplied plants was balanced by a similar increase in K+ charge. Plants supplied with NH4Cl accumulated greater concentrations of Cl- in leaves (up to 5.1% of DW) than plants supplied with (NH4)2SO4 (less than -% DW). Despite the high Cl- concentration of leaves in NH4Cl supplied plants, these plants showed no symptoms of Cl- toxicity. This demonstrates that toxicity symptoms are not due solely to an interaction between high Cl- concentration in tissue and NH4+ nutrition. The increase in root-zone acidity to pH 4.5 from 6.0 did not induce toxicity symptoms.

  2. Analysis of the NASA AirMOSS Root Zone Soil Water and Soil Temperature from Three North American Ecosystems

    NASA Astrophysics Data System (ADS)

    Hagimoto, Y.; Cuenca, R. H.

    2015-12-01

    Root zone soil water and temperature are controlling factors for soil organic matter accumulation and decomposition which contribute significantly to the CO2 flux of different ecosystems. An in-situ soil observation protocol developed at Oregon State University has been deployed to observe soil water and temperature dynamics in seven ecological research sites in North America as part of the NASA AirMOSS project. Three instrumented profiles defining a transect of less than 200 m are installed at each site. All three profiles collect data for in-situ water and temperature dynamics employing seven soil water and temperature sensors installed at seven depth levels and one infrared surface temperature sensor monitoring the top of the profile. In addition, two soil heat flux plates and associated thermocouples are installed at one of three profiles at each site. At each profile, a small 80 cm deep access hole is typically made, and all below ground sensors are installed into undisturbed soil on the side of the hole. The hole is carefully refilled and compacted so that root zone soil water and temperature dynamics can be observed with minimum site disturbance. This study focuses on the data collected from three sites: a) Tonzi Ranch, CA; b) Metolius, OR and c) BERMS Old Jack Pine Site, Saskatchewan, Canada. The study describes the significantly different seasonal root zone water and temperature dynamics under the various physical and biological conditions at each site. In addition, this study compares the soil heat flux values estimated by the standard installation using the heat flux plates and thermocouples installed near the surface with those estimated by resolving the soil heat storage based on the soil water and temperature data collected over the total soil profile.

  3. Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)

    PubMed Central

    Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P.; McSpadden Gardener, Brian B.

    2015-01-01

    This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and “Candidatus Koribacter” was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

  4. Oxygen diffusion measurements in porous media on the ISS: One piece of the puzzle for optimal root zone performance

    NASA Astrophysics Data System (ADS)

    Jones, Scott; Heinse, Robert; Or, Dani; Topham, T. Shane; Podolsky, Igor; Bingham, Gail

    Optimization of Root Zone Substrates (ORZS) are currently being researched to expand plantbased bio-regenerative life support systems. This NASA funded research investigates the effect of reduced-gravity on porous media fluid management at the root-module and pore scale, necessitated by current limitations in root zone management that may have led to stunted, often unexplained plant vigor. Among them, alterations in substrate water retention and oxygen diffusion are restraining optimal support of plant growth. Our work explores the effect of gravity on the distribution and flow of fluids in porous media. These effects demonstrate unanticipated behavior in fluid transport with fluid distribution in pursuit of a capillary equilibrium within the hysteretic, contingent energy potential of water and continuity of phases for the supply of plant resources to the root. We investigate how accounts of fluid transport are part of a larger story of fluid distribution when gravitational and capillary forces are shifting. We now have data from the International Space Station that were collected in a novel experimental setup developed and tested for measurement of oxygen diffusion in partially saturated porous media under microgravity conditions with a sealed dual-chamber diffusion cell. The experiment flew on the International Space Station between July and September 2007 as part of the ORZS- MIS experimental flight package. In comparing oxygen diffusion measurements in microgravity with earth-based data, results point to enhanced hysteresis in oxygen diffusion dependency on air-filled porosity in microgravity. This indicates altered water distribution patterns relative to earth-based measurements. Considering air invasion during drainage, we hypothesize that a critical air-filled pathway forms at higher saturation in microgravity due to the absence of hydrostatic water distribution. A shift in the critical air-filled porosity in microgravity would require adjustment in plant

  5. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone

    PubMed Central

    Butterfield, Cristina N.; Li, Zhou; Andeer, Peter F.; Spaulding, Susan; Thomas, Brian C.; Singh, Andrea; Hettich, Robert L.; Suttle, Kenwyn B.; Probst, Alexander J.; Tringe, Susannah G.; Northen, Trent; Pan, Chongle

    2016-01-01

    Annually, half of all plant-derived carbon is added to soil where it is microbially respired to CO2. However, understanding of the microbiology of this process is limited because most culture-independent methods cannot link metabolic processes to the organisms present, and this link to causative agents is necessary to predict the results of perturbations on the system. We collected soil samples at two sub-root depths (10–20 cm and 30–40 cm) before and after a rainfall-driven nutrient perturbation event in a Northern California grassland that experiences a Mediterranean climate. From ten samples, we reconstructed 198 metagenome-assembled genomes that represent all major phylotypes. We also quantified 6,835 proteins and 175 metabolites and showed that after the rain event the concentrations of many sugars and amino acids approach zero at the base of the soil profile. Unexpectedly, the genomes of novel members of the Gemmatimonadetes and Candidate Phylum Rokubacteria phyla encode pathways for methylotrophy. We infer that these abundant organisms contribute substantially to carbon turnover in the soil, given that methylotrophy proteins were among the most abundant proteins in the proteome. Previously undescribed Bathyarchaeota and Thermoplasmatales archaea are abundant in deeper soil horizons and are inferred to contribute appreciably to aromatic amino acid degradation. Many of the other bacteria appear to breakdown other components of plant biomass, as evidenced by the prevalence of various sugar and amino acid transporters and corresponding hydrolyzing machinery in the proteome. Overall, our work provides organism-resolved insight into the spatial distribution of bacteria and archaea whose activities combine to degrade plant-derived organics, limiting the transport of methanol, amino acids and sugars into underlying weathered rock. The new insights into the soil carbon cycle during an intense period of carbon turnover, including biogeochemical roles to

  6. Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone.

    PubMed

    Butterfield, Cristina N; Li, Zhou; Andeer, Peter F; Spaulding, Susan; Thomas, Brian C; Singh, Andrea; Hettich, Robert L; Suttle, Kenwyn B; Probst, Alexander J; Tringe, Susannah G; Northen, Trent; Pan, Chongle; Banfield, Jillian F

    2016-01-01

    Annually, half of all plant-derived carbon is added to soil where it is microbially respired to CO2. However, understanding of the microbiology of this process is limited because most culture-independent methods cannot link metabolic processes to the organisms present, and this link to causative agents is necessary to predict the results of perturbations on the system. We collected soil samples at two sub-root depths (10-20 cm and 30-40 cm) before and after a rainfall-driven nutrient perturbation event in a Northern California grassland that experiences a Mediterranean climate. From ten samples, we reconstructed 198 metagenome-assembled genomes that represent all major phylotypes. We also quantified 6,835 proteins and 175 metabolites and showed that after the rain event the concentrations of many sugars and amino acids approach zero at the base of the soil profile. Unexpectedly, the genomes of novel members of the Gemmatimonadetes and Candidate Phylum Rokubacteria phyla encode pathways for methylotrophy. We infer that these abundant organisms contribute substantially to carbon turnover in the soil, given that methylotrophy proteins were among the most abundant proteins in the proteome. Previously undescribed Bathyarchaeota and Thermoplasmatales archaea are abundant in deeper soil horizons and are inferred to contribute appreciably to aromatic amino acid degradation. Many of the other bacteria appear to breakdown other components of plant biomass, as evidenced by the prevalence of various sugar and amino acid transporters and corresponding hydrolyzing machinery in the proteome. Overall, our work provides organism-resolved insight into the spatial distribution of bacteria and archaea whose activities combine to degrade plant-derived organics, limiting the transport of methanol, amino acids and sugars into underlying weathered rock. The new insights into the soil carbon cycle during an intense period of carbon turnover, including biogeochemical roles to previously

  7. Spatial regression between soil surface elevation, water storage in root zone and biomass productivity of alfalfa within an irrigated field

    NASA Astrophysics Data System (ADS)

    Zeyliger, Anatoly; Ermolaeva, Olga

    2014-05-01

    Efficiency of water use for the irrigation purposes is connected to the variety of circumstances, factors and processes appearing along the transportation path of water from its sources to the root zone of the plant. Water efficiency of agricultural irrigation is connected with variety of circumstances, the impacts and the processes occurring during the transportation of water from water sources to plant root zone. Agrohydrological processes occur directly at the irrigated field, these processes linked to the infiltration of the applied water subsequent redistribution of the infiltrated water within the root zone. One of them are agrohydrological processes occurring directly on an irrigated field, connected with infiltration of water applied for irrigation to the soil, and the subsequent redistribution of infiltrated water in the root zone. These processes have the strongly pronounced spatial character depending on the one hand from a spatial variation of some hydrological characteristics of soils, and from other hand with distribution of volume of irrigation water on a surface of the area of an irrigated field closely linked with irrigation technology used. The combination of water application parameters with agrohydrological characteristics of soils and agricultural vegetation in each point at the surface of an irrigated field leads to formation of a vector field of intensity of irrigation water. In an ideal situation, such velocity field on a soil surface should represent uniform set of vertically directed collinear vectors. Thus values of these vectors should be equal to infiltration intensities of water inflows on a soil surface. In soil profile the field of formed intensities of a water flow should lead to formation in it of a water storage accessible to root system of irrigated crops. In practice this ideal scheme undergoes a lot of changes. These changes have the different nature, the reasons of occurrence and degree of influence on the processes connected

  8. Cardiotonic activity of methanolic extract of Saussurea lappa Linn roots.

    PubMed

    Akhtar, Muhammad Shoaib; Bashir, Sajid; Malik, Muhammad Nasir-Hayat; Manzoor, Rashida

    2013-11-01

    The cardiac activity of Saussurea lappa roots was evaluated in isolated perfused rabbit heart by the Langendorff's technique. Heart rate, contractility and coronary flow were determined in the presence of different concentrations of methanolic extract of Saussurea lappa, digoxin and diltiazem. The extract exhibited significant (p<0.01) positive inotropic effect at the first three doses (0.5/μg, 2.5/μg and 5.0/μg) while a significant negative chronotropic effect and coronary flow rates were observed at all the doses tested. These effects were comparable to the effects of digoxin and diltiazem. The increase in force of contraction with decrease in heart rate and coronary flow rates were also observed to be dose dependent as increase in the dose of test extract further enhanced the effects except contractility that started decreasing at higher doses. It is conceivable therefore, that Saussurea lappa roots contain certain pharmacologically active compounds that could be involved in the cardiotonic activity of the extract.

  9. Ecophysiology of Trembling Aspen in Response to Root-Zone Conditions and Competition on Reclaimed Mine Soil.

    NASA Astrophysics Data System (ADS)

    Bockstette, S.; Landhäusser, S.; Pinno, B.; Dyck, M. F.

    2014-12-01

    Reclaimed soils are typically characterized by increased bulk densities, penetration resistances and poor soil structure as well as associated problems with hydrology and aeration. As a result, available rooting space for planted tree seedlings is often restricted to a shallow layer of topsoil, which is usually of higher quality and is cultivated prior to planting. This may hinder the development of healthy root systems, thus drastically increasing the risk for plant stress by limiting access to soil resources such as water, nutrients and oxygen. These problems are exacerbated when herbaceous plants compete for the same resources within this limited root-zone. To understand how limited rooting space affects the physiology of young trees, we experimentally manipulated soil conditions and levels of competition at a reclaimed mine site in central Alberta, Canada. The site was characterized by heavily compacted, fine textured subsoil (~2.0 Mg ha-1), capped with 15 cm of topsoil (~1.5 Mg ha-1). In a replicated study (n=6) half the plots were treated with a subsoil plow to a depth of about 60 cm to increase available rooting spece. Subsequently, trembling aspen (Populus tremuloides Michx.) and smooth brome (Bromus inermis L.) were planted to create four vegetation covers: aspen (a), brome (b), aspen + brome (ab) and control (c) (no vegetation). Various soil properties, including texture, bulk density, penetration resistance and water availability, in conjunction with plant parameters such as root and shoot growth, leaf area development, sap flow, and stomatal conductance have since been monitored, both in-situ and through destructive sampling. Our results indicate that the soil treatment was effective in lowering bulk densities and penetration resistance, while improving moisture retention characteristics. Tree seedling growth and leaf area development were significantly greater without competition, but did not differ between soil treatments. The soil treatment generally

  10. Targeted expression of SbMATE in the root distal transition zone is responsible for sorghum aluminum resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aluminum (Al) toxicity is one of the major limiting factors for crop production on acid soils that comprise significant portions of the world’s lands. Al resistance in the cereal crop, Sorghum bicolor, is mainly achieved by Al-activated root apical citrate exudation, which is mediated by the plasma ...

  11. Phytochemical investigation of Aloe pulcherrima roots and evaluation for its antibacterial and antiplasmodial activities

    PubMed Central

    Abdissa, Dele; Geleta, Girma; Abdissa, Negera

    2017-01-01

    Medicinal plants with documented traditional uses remain an important source for the treatment of a wide range of ailments. Evidence shows that majority of the Ethiopian population are still dependent on traditional medicine. Aloe pulcherrima Gilbert & Sebsebe is one of the endemic Aloe species traditionally used for the treatment of malaria and wound healing in central, Southern and Northern part of Ethiopia. The aim of the current study was, therefore, to isolate active compounds from roots of A. pulcherrima and evaluate for their antibacterial and antiplasmodial activities using standard test strains. Bioassay-guided sequential extraction and column chrom-atographic separation were employed for the isolation of bioactive pure compounds. The structures of the compounds were determined by 1D and 2D NMR spectro-scopic techniques. Disk diffusion method was employed to evaluate the antibacterial activities of the isolated compounds against four bacterial strains specifically (Staphylococcus aureus ATCC 25923, Bacillus subtilis ATCC 6633, Escherichia coli ATCC 35218, Pseudomonas aeruginosa ATCC 27853). The malaria SYBR Green I-based in vitro assay technique was used for in vitro antiplasmodial activity evaluation of the compounds against chloroquine resistant (D6) and -sensitive (W2) strains of P. falciparum. Three compounds, chrysophanol, aloesaponarin I and aloesaponarin II were isolated from the acetone extracts of roots of A. pulcherrima. Evaluation of antibacterial activities revealed that aloesaponarin I and aloesaponarin II had significant activities against all the bacterial strains with inhibition zone diameters ranging from 18–27 mm as compared to the reference drug (gentamicin), which displayed inhibition zone diameter ranging between 20 mm (B. subtilis) and 25 mm (P. aeruginosa). The isolated compounds showed moderate in vitro antiplasmodial activity against both chloroquine resistant (W2) -sensitive (D6) strains. Isolation of chrysophanol, aloesaponarin

  12. Basaltic Diatreme To Root Zone Volcanic Processes In Tuzo Kimberlite Pipe (Gahcho Kué Kimberlite Field, NWT, Canada)

    NASA Astrophysics Data System (ADS)

    Seghedi, I.; Kurszlaukis, S.; Maicher, D.

    2009-05-01

    Tuzo pipe is infilled by a series of coherent and fragmental kimberlite facies types typical for a diatreme to root zone transition level. Coherent or transitional coherent kimberlite facies dominate at depth, but also occur at shallow levels, either as dikes or as individual or agglutinated coherent kimberlite clasts (CKC). Several fragmental kimberlite varieties fill the central and shallow portions of the pipe. The definition, geometry and extent of the geological units are complex and are controlled by vertical elements. Specific for Tuzo is: (1) high abundance of locally derived xenoliths (granitoids and minor diabase) between and within the kimberlite phases, varying in size from sub-millimeter to several tens of meters, frequent in a belt-like domain between 120-200 m depth in the pipe; (2) the general presence of CKC, represented by round-subround, irregular to amoeboid-shaped clasts with a macrocrystic or aphanitic texture, mainly derived from fragmentation of erupting magma and less commonly from previously solidified kimberlite, as well as recycled pyroclasts. In addition, some CKC are interpreted to be intersections of a complex dike network. This diversity attests formation by various volcanic processes, extending from intrusive to explosive; (3) the presence of bedded polymict wall- rock and kimberlite breccia occurring mostly in deep levels of the pipe below 345 m depth. The gradational contact relationships of these deposits with the surrounding kimberlite rocks and their location suggest that they formed in situ. The emplacement of Tuzo pipe involved repetitive volcanic explosions alternating with periods of relative quiescence causing at least partial consolidation of some facies. The volume deficit in the diatreme-root zone after each eruption was compensated by gravitational collapse of overlying diatreme tephra and pre-fragmented wall-rock xenoliths. Highly explosive phases were alternating with weak explosions or intrusive phases, suggesting

  13. Close Association of Azospirillum and Diazotrophic Rods with Different Root Zones of Kallar Grass

    PubMed Central

    Reinhold, Barbara; Hurek, Thomas; Niemann, Ernst-Georg; Fendrik, Istvan

    1986-01-01

    The populations of diazotrophic and nondiazotrophic bacteria were estimated in the endorhizosphere and on the rhizoplane of Kallar grass (Leptochloa fusca) and in nonrhizosphere soil. Microaerophilic diazotrophs were counted by the most-probable-number method, using two semisolid malate media, one of them adapted to the saline-sodic Kallar grass soil. Plate counts of aerobic heterotrophic bacteria were done on nutrient agar. The dominating N2-fixing bacteria were differentiated by morphological, serological, and physiological criteria. Isolates, which could not be assigned to a known species, were shown to fix nitrogen unequivocally by 15N2 incorporation. On the rhizoplane we found 2.0 × 107 diazotrophs per g (dry weight) of root, which consisted in equal numbers of Azospirillum lipoferum and Azospirillum-like bacteria showing characteristics different from those of known Azospirillum species. Surface sterilization by NaOCI treatment effectively reduced the rhizoplane population, so that bacteria released by homogenization of roots could be regarded as endorhizosphere bacteria. Azospirillum spp. were not detected in the endorhizosphere, but diazotrophic, motile, straight rods producing a yellow pigment occurred with 7.3 × 107 cells per g (dry weight) of root in the root interior. In nonrhizosphere soil we found 3.1 × 104 nitrogen-fixing bacteria per g. Diazotrophs were preferentially enriched in the Kallar grass rhizosphere. In nonrhizosphere soil they made up 0.2% of the total aerobic heterotrophic microflora, on the rhizoplane they made up 7.1%, and in the endorhizosphere they made up 85%. Owing to high numbers in and on roots and their preferential enrichment, we concluded that diazotrophs are in close association with Kallar grass. They formed entirely different populations on the rhizoplane and in the endorhizosphere. PMID:16347149

  14. Hyper, a Hydrogen Peroxide Sensor, Indicates the Sensitivity of the Arabidopsis Root Elongation Zone to Aluminum Treatment

    PubMed Central

    Hernández-Barrera, Alejandra; Velarde-Buendía, Ana; Zepeda, Isaac; Sanchez, Federico; Quinto, Carmen; Sánchez-Lopez, Rosana; Cheung, Alice Y.; Wu, Hen-Ming; Cardenas, Luis

    2015-01-01

    Emerging evidence indicates that some reactive oxygen species (ROS), such as the superoxide anion radical and hydrogen peroxide (H2O2), are central regulators of plant responses to biotic and abiotic stresses. Thus, the cellular levels of ROS are thought to be tightly regulated by an efficient and elaborate pro- and antioxidant system that modulates the production and scavenging of ROS. Until recently, studies of ROS in plant cells have been limited to biochemical assays and the use of fluorescent probes; however, the irreversible oxidation of these fluorescent probes makes it impossible to visualize dynamic changes in ROS levels. In this work, we describe the use of Hyper, a recently developed live cell probe for H2O2 measurements in living cells, to monitor oxidative stress in Arabidopsis roots subjected to aluminum treatment. Hyper consists of a circularly permuted YFP (cpYFP) inserted into the regulatory domain of the Escherichia coli hydrogen peroxide-binding protein (OxyR), and is a H2O2-specific ratiometric, and therefore quantitative, probe that can be expressed in plant and animal cells. Now we demonstrate that H2O2 levels drop sharply in the elongation zone of roots treated with aluminum. This response could contribute to root growth arrest and provides evidence that H2O2 is involved in early Al sensing. PMID:25569758

  15. Hyper, a hydrogen peroxide sensor, indicates the sensitivity of the Arabidopsis root elongation zone to aluminum treatment.

    PubMed

    Hernández-Barrera, Alejandra; Velarde-Buendía, Ana; Zepeda, Isaac; Sanchez, Federico; Quinto, Carmen; Sánchez-Lopez, Rosana; Cheung, Alice Y; Wu, Hen-Ming; Cardenas, Luis

    2015-01-06

    Emerging evidence indicates that some reactive oxygen species (ROS), such as the superoxide anion radical and hydrogen peroxide (H2O2), are central regulators of plant responses to biotic and abiotic stresses. Thus, the cellular levels of ROS are thought to be tightly regulated by an efficient and elaborate pro- and antioxidant system that modulates the production and scavenging of ROS. Until recently, studies of ROS in plant cells have been limited to biochemical assays and the use of fluorescent probes; however, the irreversible oxidation of these fluorescent probes makes it impossible to visualize dynamic changes in ROS levels. In this work, we describe the use of Hyper, a recently developed live cell probe for H2O2 measurements in living cells, to monitor oxidative stress in Arabidopsis roots subjected to aluminum treatment. Hyper consists of a circularly permuted YFP (cpYFP) inserted into the regulatory domain of the Escherichia coli hydrogen peroxide-binding protein (OxyR), and is a H2O2-specific ratiometric, and therefore quantitative, probe that can be expressed in plant and animal cells. Now we demonstrate that H2O2 levels drop sharply in the elongation zone of roots treated with aluminum. This response could contribute to root growth arrest and provides evidence that H2O2 is involved in early Al sensing.

  16. De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure

    PubMed Central

    Hill, Camilla Beate; Cassin, Andrew; Keeble-Gagnère, Gabriel; Doblin, Monika S.; Bacic, Antony; Roessner, Ute

    2016-01-01

    Plant roots are the first organs sensing and responding to salinity stress, manifested differentially between different root types, and also at the individual tissue and cellular level. High genetic diversity and the current lack of an assembled map-based sequence of the barley genome severely limit barley research potential. We used over 580 and 600 million paired-end reads, respectively, to create two de novo assemblies of a barley landrace (Sahara) and a malting cultivar (Clipper) with known contrasting responses to salinity. Generalized linear models were used to statistically access spatial, treatment-related, and genotype-specific responses. This revealed a spatial gene expression gradient along the barley root, with more differentially expressed transcripts detected between different root zones than between treatments. The root transcriptome also showed a gradual transition from transcripts related to sugar-mediated signaling at the root meristematic zone to those involved in cell wall metabolism in the elongation zone, and defense response-related pathways toward the maturation zone, with significant differences between the two genotypes. The availability of these additional transcriptome reference sets will serve as a valuable resource to the cereal research community, and may identify valuable traits to assist in breeding programmes. PMID:27527578

  17. From root zone modelling to regional forecasting of nitrate concentration in recharge flows - The case of the Walloon Region (Belgium)

    NASA Astrophysics Data System (ADS)

    Sohier, C.; Degré, A.; Dautrebande, S.

    2009-05-01

    SummaryIn order to model the nitrate concentration of the recharge water in a spatially distributed way for the agricultural areas of the Walloon Region of Belgium, the EPIC model was first adapted to the specific soil description by modifying the reservoir sizes. It was also adapted to the regional crop production by modifying classcrop files in relation with observed data (both aerial and underground crop growth, yield) in wheat, sugar beet, and potato fields. As the vadose zone presents a depth between 1.5 and 104 m in this region, new reservoirs were added according to the geological descriptions available. Deep nitrate transfer was validated in a specific site where cropping history was known. Nitrate nitrogen after harvest in the root zone was validated for wheat within different crop rotations using the first results of a nitrate-monitoring program planned by the authorities to test the effectiveness of the mitigation measures in agriculture. This extended model was also linked to a GIS (geographical information system) using 1 km 2-cells. All the required data were rasterised to allow HRU (hydrological response unit) identification within the cells. The cell's daily water flows are weighted flows of each HRU depending on their relative area within the cell. Water balances at catchment scale allow us to validate the calculation. Taking into account the evolution of distributed land use and observed climatic data, we have built maps of fast indicators and long-term indicators. The first map represents nitrate concentration in the water leaving the root zone and the second one represents the time transfer for nitrate from 1.5 m depth to the groundwater table and nitrate concentration in recharge water. These maps constitute major tools for nitrogen management at a regional level.

  18. Lotus hairy roots expressing inducible arginine decarboxylase activity.

    PubMed

    Chiesa, María A; Ruiz, Oscar A; Sánchez, Diego H

    2004-05-01

    Biotechnological uses of plant cell-tissue culture usually rely on constitutive transgene expression. However, such expression of transgenes may not always be desirable. In those cases, the use of an inducible promoter could be an alternative approach. To test this hypothesis, we developed two binary vectors harboring a stress-inducible promoter from Arabidopsis thaliana, driving the beta-glucuronidase reporter gene and the oat arginine decarboxylase. Transgenic hairy roots of Lotus corniculatus were obtained with osmotic- and cold-inducible beta-glucuronidase and arginine decarboxylase activities. The increase in the activity of the latter was accompanied by a significant rise in total free polyamines level. Through an organogenesis process, we obtained L. corniculatus transgenic plants avoiding deleterious phenotypes frequently associated with the constitutive over-expression of arginine decarboxylation and putrescine accumulation.

  19. Imaging the Roots of Geothermal Systems: 3-D Inversion of Magnetotelluric Array Data in the Taupo Volcanic Zone, New Zealand

    NASA Astrophysics Data System (ADS)

    Bertrand, E. A.; Caldwell, G.; Bannister, S. C.; Hill, G.; Bennie, S.

    2013-12-01

    The Taupo Volcanic Zone (TVZ), located in the central North Island of New Zealand, is a rifted arc that contains more than 20 liquid-dominated high-temperature geothermal systems, which together discharge ~4.2 GW of heat at the surface. The shallow (upper ~500 m) extent of these geothermal systems is marked by low-resistivity, mapped by tens-of-thousands of DC resistivity measurements collected throughout the 1970's and 80's. Conceptual models of heat transport through the brittle crust of the TVZ link these low-resistivity anomalies to the tops of vertically ascending plumes of convecting hydrothermal fluid. Recently, data from a 40-site array of broadband seismometers with ~4 km station spacing, and an array of 270 broadband magnetotelluric (MT) measurements with ~2 km station spacing, have been collected in the south-eastern part of the TVZ in an experiment to image the deep structure (or roots) of the geothermal systems in this region. Unlike DC resistivity, these MT measurements are capable of resolving the resistivity structure of the Earth to depths of 10 km or more. 2-D and 3-D models of subsets of these MT data have been used to provide the first-ever images of quasi-vertical low-resistivity zones (at depths of 3-7 km) that connect with the near-surface geothermal fields. These low-resistivity zones are interpreted to represent convection plumes of high-temperature fluids ascending within fractures, which supply heat to the overlying geothermal fields. At the Rotokawa, Ngatamariki and Ohaaki geothermal fields, these plumes extend to a broad layer of low-resistivity, inferred to represent a magmatic, basal heat source located below the seismogenic zone (at ~7-8 km depth) that drives convection in the brittle crust above. Little is known about the mechanisms that transfer heat into the hydrothermal regime. However, at Rotokawa, new 3-D resistivity models image a vertical low-resistivity zone that lies directly beneath the geothermal field. The top of this

  20. Long term global scale root zone soil moisture monitoring at ECMWF using a surface-only land data assimilation system

    NASA Astrophysics Data System (ADS)

    Albergel, Clement; de Rosnay, Patricia; Balsamo, Gianpaolo; Dutra, Emanuel; Kral, Tomas; Munoz-Sabater, Joaquin; Isaksen, Lars; Boussetta, Souhail; Massari, Christian; Brocca, Luca

    2015-04-01

    In the framework of the H-SAF (Satellite Application Facility on Support to Operational Hydrology and Water Management) project of EUMETSAT, ECMWF is developing a re-analysis of soil moisture that will cover 1992-2014 and will make use of satellite derived surface soil moisture (SSM) from ERS-1&2, ASCAT. This study presents the first steps toward the conception of this long term global scale root zone soil moisture; a surface-only Land Data Assimilation System (so-LDAS) able to ingest satellite-derived SSM observations is tested at global scale to increase prediction accuracy for surface and root zone soil moisture. The so-LDAS is defined as an offline sequential data assimilation system (simplified Extended Kalman Filter) based on a Land Surface Model (HTESSEL) uncoupled with the atmosphere, it is driven by ERA-Interim observations based atmospheric forcing. Its impact is assessed over 2010-2013 (1) using local in situ measurements of surface and root zone soil moisture and (2) at a basin scale initialising an event based Rainfall-Runoff hydrological model. Additionally to an open loop experiment (OL no analysis) three data assimilation experiments are used with different specification of the error matrices. The first one (Asc1) has been set up to test the so-LDAS with a soil moisture standard deviation of σb=0.01 m3m-3 for the first three layers of soil analysed and σo=0.02 m3m-3 for ASCAT SSM. σb was then doubled (Asc2) and σo set to 0.05 m3m-3 to be more consistent with satellite derived SSM errors deduced from previous independent studies. In a third experiment (Asc3), σo is set to 0.05 m3m-3, σb, is set to 0.1 × (wfc - wwilt), where wfc and wwilt are the volumetric water content at field capacity and at permanent wilting point, which depend on soil texture.

  1. Humic Acids Isolated from Earthworm Compost Enhance Root Elongation, Lateral Root Emergence, and Plasma Membrane H+-ATPase Activity in Maize Roots1

    PubMed Central

    Canellas, Luciano Pasqualoto; Olivares, Fabio Lopes; Okorokova-Façanha, Anna L.; Façanha, Arnoldo Rocha

    2002-01-01

    Earthworms (Eisenia foetida) produce humic substances that can influence plant growth by mechanisms that are not yet clear. In this work, we investigated the effects of humic acids (HAs) isolated from cattle manure earthworm compost on the earliest stages of lateral root development and on the plasma membrane H+-ATPase activity. These HAs enhance the root growth of maize (Zea mays) seedlings in conjunction with a marked proliferation of sites of lateral root emergence. They also stimulate the plasma membrane H+-ATPase activity, apparently associated with an ability to promote expression of this enzyme. In addition, structural analysis reveals the presence of exchangeable auxin groups in the macrostructure of the earthworm compost HA. These results may shed light on the hormonal activity that has been postulated for these humic substances. PMID:12481077

  2. LAR, liprin alpha and the regulation of active zone morphogenesis.

    PubMed

    Stryker, Emily; Johnson, Karl G

    2007-11-01

    Active zones are protein-rich regions of neurons that act as sites of synaptic vesicle fusion and neurotransmitter release at the pre-synaptic terminus. Although the discovery that the receptor protein tyrosine phosphatase LAR and its cytoplasmic binding partner liprin alpha are essential for proper active zone formation is nearly a decade old, the underlying mechanisms are still poorly understood. Recent studies have identified a number of binding partners for both LAR and liprin alpha, several of which play key roles in active zone assembly. These include nidogen, dallylike and syndecan--extracellular ligands for LAR that regulate synapse morphogenesis. In addition, liprin-alpha-interacting proteins such as ERC2, RIM and the MALS/Veli-Cask-Mint1 complex cooperate to form a dense molecular scaffold at the active zone that is crucial for proper synaptic function. These studies allow us to propose testable models of LAR and liprin alpha function, and provide insights into the fundamental molecular mechanisms of synapse formation and stabilization.

  3. The Proteome of the Murine Presynaptic Active Zone

    PubMed Central

    Laßek, Melanie; Weingarten, Jens; Volknandt, Walter

    2014-01-01

    The proteome of the presynaptic active zone controls neurotransmitter release and the short- and long-term structural and functional dynamics of the nerve terminal. The proteinaceous inventory of the presynaptic active zone has recently been reported. This review will evaluate the subcellular fractionation protocols and the proteomic approaches employed. A breakthrough for the identification of the proteome of the presynaptic active zone was the successful employment of antibodies directed against a cytosolic epitope of membrane integral synaptic vesicle proteins for the immunopurification of synaptic vesicles docked to the presynaptic plasma membrane. Combining immunopurification and subsequent analytical mass spectrometry, hundreds of proteins, including synaptic vesicle proteins, components of the presynaptic fusion and retrieval machinery, proteins involved in intracellular and extracellular signaling and a large variety of adhesion molecules, were identified. Numerous proteins regulating the rearrangement of the cytoskeleton are indicative of the functional and structural dynamics of the presynapse. This review will critically discuss both the experimental approaches and prominent protein candidates identified. Many proteins have not previously been assigned to the presynaptic release sites and may be directly involved in the short- and long-term structural modulation of the presynaptic compartment. The identification of proteinaceous constituents of the presynaptic active zone provides the basis for further analyzing the interaction of presynaptic proteins with their targets and opens novel insights into the functional role of these proteins in neuronal communication. PMID:28250380

  4. Structural Analysis of Active North Bozgush Fault Zone (NW Iran)

    NASA Astrophysics Data System (ADS)

    Saber, R.; Isik, V.; Caglayan, A.

    2013-12-01

    NW Iran is one of the seismically active regions between Zagros Thrust Belt at the south and Caucasus at the north. Not only large magnitude historical earthquakes (Ms>7), but also 1987 Bozgush, 1997 Ardebil (Mw 6.1) and 2012 Ahar-Varzagan (Mw 6.4) earthquakes reveal that the region is seismically active. The North Bozgush Fault Zone (NBFZ) in this region has tens of kilometers in length and hundreds of meters in width. The zone has produced some large and destructive earthquakes (1593 M:6.1 and 1883 M:6.2). The NBFZ affects the Cenozoic units and along this zone Eocene units thrusted over Miocene and/or Plio-Quaternary sedimentary units. Together with morphologic features (stream offsets and alluvial fan movements) affecting the young unites reveal that the zone is active. The zone is mainly characterized by strike-slip faults with reverse component and reverse faults. Reverse faults striking N55°-85°E and dip of 40°-50° to the SW while strike-slip faults show right lateral slip with N60°-85°W and N60°-80°E directions. Our structural data analysis in NBFZ indicates that the axis direction of σ2 principal stress is vertical and the stress ratio (R) is 0.12. These results suggest that the tectonic regime along the North Bozgush Fault Zone is transpressive. Obtained other principal stresses (σ1, σ3) results are compatible with stress directions and GPS velocity suggested for NW Iran.

  5. Downscaling Satellite Data for Predicting Catchment-scale Root Zone Soil Moisture with Ground-based Sensors and an Ensemble Kalman Filter

    NASA Astrophysics Data System (ADS)

    Lin, H.; Baldwin, D. C.; Smithwick, E. A. H.

    2015-12-01

    Predicting root zone (0-100 cm) soil moisture (RZSM) content at a catchment-scale is essential for drought and flood predictions, irrigation planning, weather forecasting, and many other applications. Satellites, such as the NASA Soil Moisture Active Passive (SMAP), can estimate near-surface (0-5 cm) soil moisture content globally at coarse spatial resolutions. We develop a hierarchical Ensemble Kalman Filter (EnKF) data assimilation modeling system to downscale satellite-based near-surface soil moisture and to estimate RZSM content across the Shale Hills Critical Zone Observatory at a 1-m resolution in combination with ground-based soil moisture sensor data. In this example, a simple infiltration model within the EnKF-model has been parameterized for 6 soil-terrain units to forecast daily RZSM content in the catchment from 2009 - 2012 based on AMSRE. LiDAR-derived terrain variables define intra-unit RZSM variability using a novel covariance localization technique. This method also allows the mapping of uncertainty with our RZSM estimates for each time-step. A catchment-wide satellite-to-surface downscaling parameter, which nudges the satellite measurement closer to in situ near-surface data, is also calculated for each time-step. We find significant differences in predicted root zone moisture storage for different terrain units across the experimental time-period. Root mean square error from a cross-validation analysis of RZSM predictions using an independent dataset of catchment-wide in situ Time-Domain Reflectometry (TDR) measurements ranges from 0.060-0.096 cm3 cm-3, and the RZSM predictions are significantly (p < 0.05) correlated with TDR measurements [r = 0.47-0.68]. The predictive skill of this data assimilation system is similar to the Penn State Integrated Hydrologic Modeling (PIHM) system. Uncertainty estimates are significantly (p < 0.05) correlated to cross validation error during wet and dry conditions, but more so in dry summer seasons. Developing an

  6. The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat

    PubMed Central

    Irvine, Irina C.; Brigham, Christy A.; Suding, Katharine N.; Martiny, Jennifer B. H.

    2012-01-01

    Pink-pigmented facultative methylotrophic bacteria (PPFMs) are associated with the roots, leaves and seeds of most terrestrial plants and utilize volatile C1 compounds such as methanol generated by growing plants during cell division. PPFMs have been well studied in agricultural systems due to their importance in crop seed germination, yield, pathogen resistance and drought stress tolerance. In contrast, little is known about the PPFM abundance and diversity in natural ecosystems, let alone their interactions with non-crop species. Here we surveyed PPFM abundance in the root zone soil of 5 native and 5 invasive plant species along ten invasion gradients in Southern California coastal sage scrub habitat. PPFMs were present in every soil sample and ranged in abundance from 102 to 105 CFU/g dry soil. This abundance varied significantly among plant species. PPFM abundance was 50% higher in the root zones of annual or biennial species (many invasives) than perennial species (all natives). Further, PPFM abundance appears to be influenced by the plant community beyond the root zone; pure stands of either native or invasive species had 50% more PPFMs than mixed species stands. In sum, PPFM abundance in the root zone of coastal sage scrub plants is influenced by both the immediate and surrounding plant communities. The results also suggest that PPFMs are a good target for future work on plant-microorganism feedbacks in natural ecosystems. PMID:22383990

  7. [Effects of alternate partial root-zone subsurface drip irrigation on potato yield and water use efficiency].

    PubMed

    Huang, Zhong-Dong; Qi, Xue-Bin; Fan, Xiang-Yang; Hu, Chao; Zhu, Dong-Hai; Li, Ping; Qiao, Dong-Mei

    2010-01-01

    Field experiment was conducted to investigate the effects of alternate partial root-zone subsurface drip irrigation (APRSDI) on the physiological responses, yield, and water use efficiency of potato. Compared with conventional drip irrigation (CDI), APRSDI had less negative effects on the potato leaf photosynthesis rate (P(n)), but decreased the transpiration rate and stomatal conductance significantly. The slightly higher P(n) under CDI was at the expense of consuming more water. No significant difference was observed in the potato yield under APRSDI and CDI, but APRSDI saved the irrigation amount by 25.8% and increased the irrigation water use efficiency and total water use efficiency by 27.5% and 15.3%, respectively, suggesting that APRSDI would be a feasible water-saving irrigation technique for the planting of potato.

  8. Salinization of the soil solution decreases the further accumulation of salt in the root-zone of the halophyte Atriplex nummularia Lindl. growing above shallow saline groundwater.

    PubMed

    Alharby, Hesham F; Colmer, Timothy D; Barrett-Lennard, Edward G

    2017-03-30

    Water use by plants in landscapes with shallow saline groundwater may lead to the accumulation of salt in the root-zone. We examined the accumulation of Na(+) and Cl(-) around the roots of the halophyte Atriplex nummularia Lindl. and the impacts of this increasing salinity for stomatal conductance, water use and growth. Plants were grown in columns filled with a sand-clay mixture, and connected at the bottom to reservoirs containing 20, 200 or 400 mM NaCl. At 21 days, Na(+) and Cl(-) concentrations in the soil solution were affected by the salinity of the groundwater, height above the water-table and the root fresh mass density at various soil depths (P < 0.001). However, by day 35 the groundwater salinity and height above the water-table remained significant factors, but the root fresh mass density was no longer significant. Regression of data from the 200 and 400 mM NaCl treatments showed that the rate of Na(+) accumulation in the soil increased until the Na(+) concentration reached ~250 mM within the root-zone; subsequent decreases in accumulation were associated with decreases in stomatal conductance. Salinization of the soil solution therefore had a feedback effect on further salinization within the root-zone.

  9. Root zone temperature affects the phytoextraction of Ba, Cl, Sn, Pt, and Rb using potato plants (Solanum tuberosum L. var. Spunta) in the field.

    PubMed

    Baghour, M; Moreno, D A; Víllora, G; Hernández, J; Castilla, N; Romero, L

    2002-01-01

    Three consecutive years of field experiments were conducted to investigate how different root-zone temperatures, manipulated by using different mulches, affect the phytoextraction of Ba, Cl, Sn, Pt and Rb in different organs of potato plants (roots, tubers, stems and leaves). Four different plastic covers were used (T1: transparent polyethylene; T2: white polyethylene; T3: white and black coextruded polyethylene, and T4: black polyethylene), using uncovered plants as control (T0). The different treatments had a significant effect on mean root zone temperatures (T0 = 16 degrees C, T1 = 20 degrees C, T2 = 23 degrees C, T3 = 27 degrees C and T4 = 30 degrees C) and induced a significantly different response in Ba, Cl, Sn, Pt and Rb concentration and accumulation. The T3 treatment gave rise to the greatest phytoextraction of Ba, Pt, Cl and Sn in the roots, leaflets and tubers. In terms of the relative distribution of the phytoaccumulated elements (as percentage of the total within the plant), Pt and Ba accumulated mainly in the roots whereas Rb, Sn and Cl accumulated primarily in tubers, establishing a close relationship between the biomass development of each organ and phytoaccumulation capacity of metals in response to temperature in the root zone.

  10. Contrasting physiological effects of partial root zone drying in field-grown grapevine (Vitis vinifera L. cv. Monastrell) according to total soil water availability.

    PubMed

    Romero, Pascual; Dodd, Ian C; Martinez-Cutillas, Adrian

    2012-06-01

    Different spatial distributions of soil moisture were imposed on field-grown grapevines by applying the same irrigation volumes to the entire (DI; deficit irrigation) or part of the (PRD; partial root zone drying) root zone. Five treatments were applied: controls irrigated at 60% ETc (crop evapotranspiration) for the whole season (308 mm year(-1)); DI-1 and PRD-1 that received the same irrigation as controls before fruit set, 30% ETc from fruit set to harvest and 45% ETc post-harvest (192 mm year(-1)); and DI-2 and PRD-2 that were the same, except that 15% ETc was applied from fruit set to harvest (142 mm year(-1)). Compared with DI-1, PRD-1 maintained higher leaf area post-veraison and increased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, but decreased intrinsic gas exchange efficiency without causing differences in leaf xylem abscisic acid (ABA) concentration. Compared with DI-2, PRD-2 increased leaf xylem ABA concentration and decreased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, mainly at the beginning of PRD cycles. Distinctive PRD effects (e.g. greater stomatal closure) depended on the volumetric soil water content of the wet root zone, as predicted from a model of root-to-shoot ABA signalling.

  11. Modeling Water Flux at the Base of the Rooting Zone for Soils with Varying Glacial Parent Materials

    NASA Astrophysics Data System (ADS)

    Naylor, S.; Ellett, K. M.; Ficklin, D. L.; Olyphant, G. A.

    2013-12-01

    Soils of varying glacial parent materials in the Great Lakes Region (USA) are characterized by thin unsaturated zones and widespread use of agricultural pesticides and nutrients that affect shallow groundwater. To better our understanding of the fate and transport of contaminants, improved models of water fluxes through the vadose zones of various hydrogeologic settings are warranted. Furthermore, calibrated unsaturated zone models can be coupled with watershed models, providing a means for predicting the impact of varying climate scenarios on agriculture in the region. To address these issues, a network of monitoring sites was developed in Indiana that provides continuous measurements of precipitation, potential evapotranspiration (PET), soil volumetric water content (VWC), and soil matric potential to parameterize and calibrate models. Flux at the base of the root zone is simulated using two models of varying complexity: 1) the HYDRUS model, which numerically solves the Richards equation, and 2) the soil-water-balance (SWB) model, which assumes vertical flow under a unit gradient with infiltration and evapotranspiration treated as separate, sequential processes. Soil hydraulic parameters are determined based on laboratory data, a pedo-transfer function (ROSETTA), field measurements (Guelph permeameter), and parameter optimization. Groundwater elevation data are available at three of six sites to establish the base of the unsaturated zone model domain. Initial modeling focused on the groundwater recharge season (Nov-Feb) when PET is limited and much of the annual vertical flux occurs. HYDRUS results indicate that base of root zone fluxes at a site underlain by glacial ice-contact parent materials are 48% of recharge season precipitation (VWC RMSE=8.2%), while SWB results indicate that fluxes are 43% (VWC RMSE=3.7%). Due in part to variations in surface boundary conditions, more variable fluxes were obtained for a site underlain by alluvium with the SWB model (68

  12. Electron probe X-ray microanalysis studies on the distribution change of intra- and extracellular calcium in the elongation zone of horizontally reoriented soybean roots.

    PubMed

    Hayatsu, Manabu; Suzuki, Suechika

    2015-10-01

    To clarify the contribution of Ca to the gravitropic response, quantitative X-ray microanalyses were performed on cryosections of roots of soybean seedlings reoriented horizontally from their original vertical orientation. After reorientation, the roots bent gradually toward the ground at the elongation zone. The concentrations of Ca in the cell walls, cytoplasmic matrices and central vacuoles of cortical cells were measured in the upper and lower halves of the elongation zone at 0, 30, 60 and 120 min after reorientation. The Ca concentration did not significantly change in the cytoplasmic matrices or vacuoles. Additionally, the Ca concentration did not change significantly in cell walls at 30 min after reorientation; however, beyond 30 min, this concentration significantly increased gradually in the lower half of the elongation zone and decreased in the upper half of the elongation zone, indicating a typical asymmetrical distribution of Ca. These results suggest that Ca moves apoplastically in soybean roots to produce an asymmetrical Ca distribution in the elongation zone, which contributes to root curvature. The possible role of Ca in accelerating or repressing the effect of auxin is also discussed in this study.

  13. [Effects of water-fertilizer spatial coupling in root zone on winter wheat growth and yield].

    PubMed

    Li, Kai-feng; Zhang, Fu-cang; Qi, You-ling; Xing, Ying-ying; Li, Zhi-jun

    2010-12-01

    A soil column experiment was conducted to study the winter wheat growth and yield under effects of different soil wetting (overall wetting, upper part wetting, and lower part wetting) and fertilization (overall fertilization, upper part fertilization, and lower part fertilization). The plant height and leaf area at tillering stage decreased significantly under lower part fertilization, compared with those under upper part and overall soil fertilization, but had no significant differences under different soil wetting. At jointing stage, the plant height was higher when the soil wetting and fertilization were at same location than at different location, manifesting a synergistic coupling effect of water and fertilizer. Lower part soil wetting and lower part fertilization decreased the root-, shoot-, and total dry biomass significantly, upper part fertilization benefited the biomass accumulation of winter wheat, and upper part soil wetting combined with upper part fertilization had an obvious coupling effect on the shoot- and total dry biomass. Soil wetting and fertilization at same location induced a higher ratio of root to shoot, compared with soil wetting and fertilization at different location, and lower part soil wetting resulted in the maximum water use efficiency (WUE), compared with upper part and overall soil wetting. A higher WUE was observed in the soil wetting and fertilization at same location than at different location, but a lower WUE was induced by lower part fertilization. The grain number per spike under upper part and overall soil wetting was increased by 41.7% and 61.9%, respectively, compared with that under lower part soil wetting, and this yield component under upper part and overall soil fertilization was also higher, compared with that under lower part fertilization. Upper part soil wetting and fertilization had an obvious coupling effect of water-fertilizer on the yield and yield components (except for 1000-grain mass). Different soil wetting

  14. Phenolic composition and biological activities of Tunisian Nigella sativa L. shoots and roots.

    PubMed

    Bourgou, Soumaya; Ksouri, Riadh; Bellila, Amor; Skandrani, Ines; Falleh, Hanen; Marzouk, Brahim

    2008-01-01

    In the present investigation, methanolic extracts from shoots and roots of Tunisian Nigella sativa were assayed for their antioxidant and antimutagenic activities. The phenolic composition of the methanolic extracts was determined by RP-HPLC. The predominant phenolic compound was vanillic acid with a mean concentration of 143.21 and 89.94 mg per 100 g dry weight of shoots and roots, respectively. Shoots and roots showed comparable and strong superoxide scavenger activity; however, shoots exhibited higher DPPH radical scavenging, reducing and chelating activities than roots. Mutagenic and antimutagenic activities were determined by using the Ames test. Shoots and roots demonstrated important antimutagenic effects. Roots exhibited stronger activity than shoots with an inhibition percentage of 71.32%.

  15. Methanolic extracts of Withania somnifera leaves, fruits and roots possess antioxidant properties and antibacterial activities

    PubMed Central

    2012-01-01

    Background Withania somnifera, also known as ashwagandha, is an important herb in ayurvedic and indigenous medical systems. The present study was designed to evaluate the antioxidant and antibacterial activities of an 80% aqueous methanolic extract of W. somnifera roots (WSREt), fruits (WSFEt) and leaves (WSLEt). Methods Several assays were performed to determine the antioxidant properties of this herb including 1,1-diphenyl-2-picrylhydrazyl radical (DPPH) scavenging activity, ferric reducing antioxidant power (FRAP), ferrous chelation and inhibition of β-carotene bleaching. Results The values for DPPH, FRAP, ferrous chelation and inhibition of β carotene bleaching for the three types of extracts ranged from 101.73-801.93 μg/ml, 2.26-3.29 mM Fe/kg, 0.22-0.65 mg/ml and 69.87-79.67%, respectively, indicating that W. somnifera, particularly the leaves, possesses significant antioxidant properties. The mean ascorbic acid content was 20.60-62.60 mg/100 g, and the mean anthocyanin content was 2.86-12.50 mg/100 g. Antibacterial activities were measured using the agar well diffusion method and five pathogenic Gram-negative bacteria: Escherichia coli, Salmonella typhi, Citrobacter freundii, Pseudomonas aeruginosa and Klebsiella pneumoniae. The leaf extracts displayed the highest activity against S. typhi (32.00 ± 0.75 mm zone of inhibition), whereas the lowest activity was against K. pneumoniae (19.00 ± 1.48 mm zone of inhibition). The lowest minimum inhibitory concentration value was 6.25 mg/ml, which was against S. typhi, followed by 12.5 mg/ml against E. coli. Conclusion In addition to its antioxidant properties, W. somnifera exhibited significant antibacterial activities against Gram-negative bacteria, particularly S. typhi. PMID:23039061

  16. Evaluation of in-vitro antibacterial activity and anti-inflammatory activity for different extracts of Rauvolfia tetraphylla L. root bark

    PubMed Central

    Ganga Rao, B.; Umamaheswara Rao, P.; Sambasiva Rao, E.; Mallikarjuna Rao, T.; Praneeth. D, V. S.

    2012-01-01

    Objective To assess the in-vitro antibacterial activity and anti-inflammatory activity of orally administered different extracts (Hydro-alcoholic, methanolic, ethyl acetate and hexane) of Rauvolfia tetraphylla (R. tetraphylla) root bark in Carrageenan induced acute inflammation in rats. Methods In-vitro antibacterial activity was evaluated for extracts against four Gram positive and four Gram negative bacteria by using cylinder plate assay. Hydro-alcoholic extract (70% v/v ethanol) at 200, 400 and 800 mg/kg doses and methanolic, ethyl acetate and hexane extracts at doses 100, 200 and 400 mg/kg were tested for anti-inflammatory activity in Carrageenan induced rat paw oedema model and paw thickness was measured every one hour up to 6 hrs. Results All extracts of R. tetraphylla root bark showed good zone of inhibition against tested bacterial strains. In Carrageenan induced inflammation model, hydro-alcoholic and methanolic extract of R. tetraphylla root bark at three different doses produced significant (P<0.001) reduction when compared to vehicle treated control group and hexane, ethyl acetate extracts. Conclusions In the present study extracts of R. tetraphylla root bark shows good in-vitro antibacterial activity and in-vivo anti-inflammatory activity in rats. PMID:23569853

  17. The Interfacial Transition Zone in Alkali-Activated Slag Mortars

    NASA Astrophysics Data System (ADS)

    San Nicolas, Rackel; Provis, John

    2015-12-01

    The interfacial transition zone (ITZ) is known to strongly influence the mechanical and transport properties of mortars and concretes. This paper studies the ITZ between siliceous (quartz) aggregates and alkali activated slag binders in the context of mortar specimens. Backscattered electron images (BSE) generated in an environmental scanning electron microscope (ESEM) are used to identify unreacted binder components, reaction products and porosity in the zone surrounding aggregate particles, by composition and density contrast. X-ray mapping is used to exclude the regions corresponding to the aggregates from the BSE image of the ITZ, thus enabling analysis of only the binder phases, which are segmented into binary images by grey level discrimination. A distinct yet dense ITZ region is present in the alkali-activated slag mortars, containing a reduced content of unreacted slag particles compared to the bulk binder. The elemental analysis of this region shows that it contains a (C,N)-A-S-H gel which seems to have a higher content of Na (potentially deposited through desiccation of the pore solution) and a lower content of Ca than the bulk inner and outer products forming in the main binding region. These differences are potentially important in terms of long-term concrete performance, as the absence of a highly porous interfacial transition zone region is expected to provide a positive influence on the mechanical and transport properties of alkali-activated slag concretes.

  18. Evaluating the impact of groundwater on cotton growth and root zone water balance using Hydrus-ID coupled with a crop growth model

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Groundwater is an important factor that needs to be considered when evaluating the water balance of the soil-plant-atmosphere system and the sustainable water management. However, the impact of shallow groundwater on the root zone water balance and cotton growth is not fully understood. In this stud...

  19. PRZM-3, A MODEL FOR PREDICTING PESTICIDE AND NITROGEN FATE IN THE CROP ROOT AND UNSATURATED SOIL ZONES: USER'S MANUAL FOR RELEASE 3.12.2

    EPA Science Inventory

    This publication contains documentation for the PRZM-3 model. PRZM-3 is the most recent version of a modeling system that links two subordinate models, PRZM and VADOFT, in order to predict pesticide transport and transformation down through the crop root and unsaturated soil zone...

  20. Documentation of Computer Program INFIL3.0 - A Distributed-Parameter Watershed Model to Estimate Net Infiltration Below the Root Zone

    USGS Publications Warehouse

    ,

    2008-01-01

    This report documents the computer program INFIL3.0, which is a grid-based, distributed-parameter, deterministic water-balance watershed model that calculates the temporal and spatial distribution of daily net infiltration of water across the lower boundary of the root zone. The bottom of the root zone is the estimated maximum depth below ground surface affected by evapotranspiration. In many field applications, net infiltration below the bottom of the root zone can be assumed to equal net recharge to an underlying water-table aquifer. The daily water balance simulated by INFIL3.0 includes precipitation as either rain or snow; snowfall accumulation, sublimation, and snowmelt; infiltration into the root zone; evapotranspiration from the root zone; drainage and water-content redistribution within the root-zone profile; surface-water runoff from, and run-on to, adjacent grid cells; and net infiltration across the bottom of the root zone. The water-balance model uses daily climate records of precipitation and air temperature and a spatially distributed representation of drainage-basin characteristics defined by topography, geology, soils, and vegetation to simulate daily net infiltration at all locations, including stream channels with intermittent streamflow in response to runoff from rain and snowmelt. The model does not simulate streamflow originating as ground-water discharge. Drainage-basin characteristics are represented in the model by a set of spatially distributed input variables uniquely assigned to each grid cell of a model grid. The report provides a description of the conceptual model of net infiltration on which the INFIL3.0 computer code is based and a detailed discussion of the methods by which INFIL3.0 simulates the net-infiltration process. The report also includes instructions for preparing input files necessary for an INFIL3.0 simulation, a description of the output files that are created as part of an INFIL3.0 simulation, and a sample problem that

  1. Modeling Plant-Scale Root Zone Water Dynamics in an Oak Savanna

    NASA Astrophysics Data System (ADS)

    Chen, X.; Miller, G.; Rubin, Y.; Baldocchi, D.

    2007-12-01

    Study of water exchange between soil, plants, and the atmosphere in response to seasonal or periodic droughts is critical to modeling the hydrologic cycle and biogeochemical processes in water-controlled ecosystems. The difficulties in such studies arise from insufficient understanding of the complex interactions between the various processes and their scale-dependence. The purpose of our study is to establish and calibrate a plant biophysical model that couples plant-soil and plant-atmospheric interactions to calculate the water exchange through the soil-plant-atmosphere continuum at a plant scale (~10 m2), with the regulation of root water uptake and evaporative fluxes by water deficits and climatic conditions explicitly considered. The complexity required for modeling water dynamics at the plant scale is investigated in this study. We start with coupling a big-leaf biophysical model with a bucket soil water balance model, with soil water loss regulated by soil water availability in a linear fashion. The alternative biophysical models with increasing complexities include the dual-source model that divide the canopy into shaded and sunlit parts and a multi-layer 1-D model with sophisticated radiation transfer and energy balance modules. The level of detail in subsurface water dynamics is adjusted by changing the dimensionality of the Richard's equation. The impact of soil water availability on water loss is modified to a nonlinear pattern as desired. The models are calibrated and compared using a cluster of measurements collected on single trees, which includes multiple soil moisture probes that monitor soil moisture profile vertically and laterally and sap flow sensors at different tree heights for measuring tree transpiration. This study forms the basis for scaling up the water dynamics to a stand scale (~100 to ~10000 m2) or other larger scales.

  2. Modelling orange tree root water uptake active area by minimally invasive ERT data and transpiration measurements

    NASA Astrophysics Data System (ADS)

    Vanella, Daniela; Boaga, Jacopo; Perri, Maria Teresa; Consoli, Simona; Cassiani, Giorgio

    2015-04-01

    The comprehension of the hydrological processes involving plant root dynamics is crucial for implementing water saving measures in agriculture. This is particular urgent in areas, like those Mediterranean, characterized by scarce water availability. The study of root water dynamics should not be separated from a more general analysis of the mass and energy fluxes transferred in the soil-plant-atmosphere continuum. In our study, in order to carry this inclusive approach, minimal invasive 3D time-lapse electrical resistivity tomography (ERT) for soil moisture estimation was combined with plant transpiration fluxes directly measured with Sap Flow (SF) techniques and Eddy Covariance methods, and volumetric soil moisture measurements by TDR probes. The main objective of this inclusive approach was to accurately define root-zone water dynamics and individuate the root-area effectively active for water and nutrient uptake process. The monitoring was carried out in Eastern Sicily (south Italy) in summers 2013 and 2014, within an experimental orange orchard farm. During the first year of experiment (October 2013), ERT measurements were carried out around the pertinent volume of one fully irrigated tree, characterized by a vegetation ground cover of 70%; in the second year (June 2014), ERT monitoring was conducted considering a cutting plant, thus to evaluate soil water dynamics without the significant plant transpiration contribution. In order to explore the hydrological dynamics of the root zone volume surrounded by the monitored tree, the resistivity data acquired during the ERT monitoring were converted into soil moisture content distribution by a laboratory calibration based on the soil electrical properties as a function of moisture content and pore water electrical conductivity. By using ERT data in conjunction with the agro-meteorological information (i.e. irrigation rates, rainfall, evapotranspiration by Eddy Covariance, transpiration by Sap Flow and soil moisture

  3. In vitro evaluation of the antibacterial activity of five sealers used in root canal therapy

    PubMed Central

    Hasheminia, Mohsen; Razavian, Hamid; Mosleh, Hamid; Shakerian, Babak

    2017-01-01

    Background: Antibacterial activity is one of the important characteristics of an ideal root canal sealer. The aim of this study was to investigate the antibacterial activity of five different sealers against Enterococcus faecalis using two different methods. Materials and Methods: The mineral trioxide aggregate (MTA) Fillapex, Tg-sealer, Endomethasone, AH-26, and RoekoSeal sealers were placed into the brain heart infusion (BHI) culture medium containing E. faecalis (PTCC1393). The diameter of the bacterial zone of inhibition was measured. In the direct contact test, a suspension containing grinded set sealers and E. faecalis bacteria was cultured in BHI after 6, 15, and 60 min. The number of colonies in milliliter was calculated. Data were subjected to one-way ANOVA and Tukey's multiple comparisons test (P < 0.05). Results: In the agar diffusion test, Endomethasone had the highest antibacterial activity against E. faecalis compared to other sealers (P < 0.001). In the direct test, the antibacterial effect of MTA Fillapex was significantly higher than that of all other sealers (P < 0.001). Conclusion: The technique and components of the tested sealers affect the antibacterial activity results. This study showed that all of sealers had antimicrobial effect. PMID:28348620

  4. [Effects of nitrogen forms on the growth, yield and fruit quality of tomato under controlled alternate partial root zone irrigation].

    PubMed

    Zhang Qiang; Xu, Fei; Wang, Rong-fu; Shu, Liang-zuo; Liu, Rui; Zhang, De-yu

    2014-12-01

    The effects of nitrogen (N) forms (ammonium-N and nitrate-N) on the growth, yield and fruit quality of tomato plants (cv. Zhongyan 988) under controlled alternate partial root zone irrigation (APRI) were examined in a split-root experiment. Under the same irrigation mode and/or controlled soil water limitation treatment, ammonium-N promoted plant growth at the early stage, while nitrate-N improved plant growth and development at the later stage leading to higher biomass accumulation and fruit yield at harvest. Under APRI and the same soil water conditions, plants of the nitrate-N treatment improved the content of vitamin C and the ratio of soluble sugar to organic acid and thus facilitated fruit quality when compared with those of the ammonium-N treatment. Plant height and leaf area under APRI treatment were lower compared with conventional irrigation (CK) under the same N form, but the stem diameter under APRI treatment with 60% theta(f) (field water capacity, theta(f)) soil moisture showed a slight increase at the late growth stage. Under the same N form, fruit yield was significantly lower in APRI treatment than that of the CK. Compared with the CK, fruit yield decreased by 22.4%-26.3% under the APRI treatment with 40% theta(f) soil moisture. Under 60% theta(f) soil moisture, the APRI treatment significantly improved fruit quality and water-use efficiency compared with the CK regardless small reduction (5.3%-5.4%) in fruit yield. The experimental results suggested that the APRI treatment with the lower limitation of soil moisture controlled at 60% theta(f), and nitrate-N supply would be the optimal option in terms of sustainable use of water resource and fertilizer.

  5. [Tomato root exudates and their effect on the growth and antifungal activity of Pseudomonas strains].

    PubMed

    Kravchenko, L V; Azarova, T S; Leonova-Erko, E I; Shaposhnikov, A I; Makarova, N M; Tikhonovich, I A

    2003-01-01

    The study of the effect of the root exometabolites of tomato plants on the growth and antifungal activity of the plant growth-promoting Pseudomonas strains showed that the antifungal activity of plant growth-promoting rhizobacteria in the plant rhizosphere may depend on the sugar and organic acid composition of root exudates.

  6. Changes in intracellular and apoplastic peroxidase activity, ascorbate redox status, and root elongation induced by enhanced ascorbate content in Allium cepa L.

    PubMed

    Córdoba-Pedregosa, María del Carmen; Villalba, José Manuel; Córdoba, Francisco; González-Reyes, José Antonio

    2005-02-01

    Onions (Allium cepa L.) treated with external ascorbic acid or with the immediate precursor of its synthesis L-galactono-gamma-lactone show a stimulated elongation rate of the roots and an increase in the number of new radicles appearing at the bulb base. Treatment with both molecules resulted in an enhanced accumulation of ascorbate and dehydroascorbate along the root axis, but the distribution of these redox forms was not uniform along the root, as detected in intracellular (symplastic) and extracellular (apoplastic) compartments. Thus, those radicular zones metabolically more active, such as the meristem and the elongation zone, accumulated the highest amount of both redox forms of ascorbate. On the other hand, ascorbate and L-galactono-gamma-lactone also stimulated cytosolic glucose-6-phosphate dehydrogenase activity and inhibited peroxidase activity as deduced from in vivo and in vitro experiments. Differences were also found when comparing apoplastic and symplastic activities. These results are compatible with the idea of an ascorbate-mediated stimulation of root growth by inhibiting cell wall stiffening and increasing root metabolism.

  7. Linking Plagioclase Zoning Patterns to Active Magma Processes

    NASA Astrophysics Data System (ADS)

    Izbekov, P. E.; Nicolaysen, K. P.; Neill, O. K.; Shcherbakov, V.; Plechov, P.; Eichelberger, J. C.

    2015-12-01

    Plagioclase, one of the most common and abundant mineral phases in volcanic products, will vary in composition in response to changes in temperature, pressure, composition of the ambient silicate melt, and melt H2O concentration. Changes in these parameters may cause dissolution or growth of plagioclase crystals, forming characteristic textural and compositional variations (zoning patterns), the complete core-to-rim sequence of which describes events experienced by an individual crystal from its nucleation to the last moments of its growth. Plagioclase crystals in a typical volcanic rock may look drastically dissimilar despite their spatial proximity and the fact that they have erupted together. Although they shared last moments of their growth during magma ascent and eruption, their prior experiences could be very different, as plagioclase crystals often come from different domains of the same magma system. Distinguishing similar zoning patterns, correlating them across the entire population of plagioclase crystals, and linking these patterns to specific perturbations in the magmatic system may provide additional perspective on the variety, extent, and timing of magma processes at active volcanic systems. Examples of magma processes, which may be distinguished based on plagioclase zoning patterns, include (1) cooling due to heat loss, (2) heating and/or pressure build up due to an input of new magmatic material, (3) pressure drop in response to magma system depressurization, and (4) crystal transfer between different magma domains/bodies. This review will include contrasting examples of zoning patters from recent eruptions of Karymsky, Bezymianny, and Tolbachik Volcanoes in Kamchatka, Augustine and Cleveland Volcanoes in Alaska, as well as from the drilling into an active magma body at Krafla, Iceland.

  8. Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone

    SciTech Connect

    Feng, Huan; Zhang, Weiguo; Qian, Yu; Liu, Wenliang; Yu, Lizhong; Yoo, Shinjae; Wang, Jun; Wang, Jia-Jun; Eng, Christopher; Liu, Chang-Jun; Tappero, Ryan

    2016-06-15

    This study investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn inPhragmites australisroot system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils.Phragmites australissamples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in the root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis.

  9. Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone

    SciTech Connect

    Feng, Huan; Zhang, Weiguo; Qian, Yu; Liu, Wenliang; Yu, Lizhong; Yoo, Shinjae; Wang, Jun; Wang, Jia -Jun; Eng, Christopher; Liu, Chang -Jun; Tappero, Ryan

    2016-06-15

    This paper investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn in Phragmites australis root system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils. Phragmites australis samples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in the root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis.

  10. 77 FR 71167 - Foreign-Trade Zone 59-Lincoln, Nebraska, Authorization of Production Activity, Novartis Consumer...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... Foreign-Trade Zones Board Foreign-Trade Zone 59--Lincoln, Nebraska, Authorization of Production Activity, Novartis Consumer Health, Inc. (Pharmaceutical and Related Preparations Production), Lincoln, Nebraska Novartis Consumer Health, Inc. submitted a notification of proposed production activity for the...

  11. The SMAP level 4 surface and root zone soil moisture data assimilation product

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The NASA Soil Moisture Active Passive (SMAP) mission is scheduled for launch in January 2015 and will provide L-band radar and radiometer observations that are sensitive to surface soil moisture (in the top few centimeters of the soil column). For several of the key applications targeted by SMAP, ho...

  12. H2O2 and ABA signaling are responsible for the increased Na+ efflux and water uptake in Gossypium hirsutum L. roots in the non-saline side under non-uniform root zone salinity.

    PubMed

    Kong, Xiangqiang; Luo, Zhen; Dong, Hezhong; Eneji, A Egrinya; Li, Weijiang

    2016-04-01

    Non-uniform root salinity increases the Na(+)efflux, water use, and growth of the root in non-saline side, which may be regulated by some form of signaling induced by the high-salinity side. However, the signaling and its specific function have remained unknown. Using a split-root system to simulate a non-uniform root zone salinity in Gossypium hirsutum L., we showed that the up-regulated expression of sodium efflux-related genes (SOS1, SOS2, PMA1, and PMA2) and water uptake-related genes (PIP1 and PIP2) was possibly involved in the elevated Na(+) efflux and water use in the the roots in the non-saline side. The increased level of indole acetic acid (IAA) in the non-saline side was the likely cause of the increased root growth. Also, the abscisic acid (ABA) and H2O2 contents in roots in the non-saline side increased, possibly due to the increased expression of their key biosynthesis genes, NCED and RBOHC, and the decreased expression of ABA catabolic CYP707A genes. Exogenous ABA added to the non-saline side induced H2O2 generation by up-regulating the RBOHC gene, but this was decreased by exogenous fluridone. Exogenous H2O2 added to the non-saline side reduced the ABA content by down-regulating NCED genes, which can be induced by diphenylene iodonium (DPI) treatment in the non-saline side, suggesting a feedback mechanism between ABA and H2O2.Both exogenous ABA and H2O2 enhanced the expression of SOS1, PIP1;7 ,PIP2;2, and PIP2;10 genes, but these were down-regulated by fluridone and DPI, suggesting that H2O2 and ABA are important signals for increasing root Na(+) efflux and water uptake in the roots in the non-saline side.

  13. Residual antibacterial activity of chlorhexidine digluconate and camphorated p-monochlorophenol in calcium hydroxide-based root canal dressings.

    PubMed

    Soares, Janir Alves; Leonardo, Mario Roberto; Tanomaru Filho, Mário; Silva, Léa Assed Bezerra da; Ito, Izabel Yoko

    2007-01-01

    The purpose of this study was to evaluate the residual antibacterial activity of several calcium hydroxide [Ca(OH)2]-based pastes, placed in root canals of dogs' teeth with induced chronic periapical lesions. Root canals were instrumented with the ProFile rotary system and filled with 4 pastes: G1 (n=16): Ca(OH)2 paste + anesthetic solution; G2 (n=20): Calen paste + camphorated p-monochlorophenol (CMCP); G3 (n=18): Calen; and G4 (n=18): Ca(OH)2 paste + 2% chlorhexidine digluconate. After 21 days, the pastes were removed with size 60 K-files and placed on Petri plates with agar inoculated with Micrococcus luteus ATCC 9341. Pastes that were not placed into root canals served as control. After pre-diffusion, incubation and optimization, the inhibition zones of bacterial growth were measured and analyzed by Mann-Whitney U test at 5% significance level. All pastes showed residual antibacterial activity. The control samples had larger halos (p<0.05). The mean residual antibacterial activity halos in G1, G2, G3 and G4 were 7.6; 10.4; 17.7 and 21.4 mm, respectively. The zones of bacterial growth of G4 were significantly larger than those of G1 and G2 (p<0.05). In conclusion, regardless of the vehicle and antiseptic, all Ca(OH)2-based pastes showed different degrees of measurable residual antibacterial activity. Furthermore, unlike CMCP, chlorhexidine increased significantly the antibacterial activity of Ca(OH)2.

  14. 78 FR 28801 - Foreign-Trade Zone 117-Orange, TX, Authorization of Production Activity, Signal International...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-16

    ... Foreign-Trade Zones Board Foreign-Trade Zone 117--Orange, TX, Authorization of Production Activity, Signal International Texas GP, LLC (Shipbuilding), Orange, TX On January 10, 2013, the Foreign Trade Zone of Southeast...-Trade Zones (FTZ) Board on behalf of Signal International Texas GP, LLC, in Orange, Texas....

  15. Microsurgical procedures in the peripheral nerves and the dorsal root entry zone for the treatment of spasticity.

    PubMed

    Sindou, M; Keravel, Y

    1988-01-01

    When spasticity becomes severe and harmful, in spite of physical and medical therapy, neurosurgery can give functional improvement. This paper deals with the long term results of Selective Peripheral Neurotomies of the Tibial Nerve and Selective Posterior Rhizotomies in the Dorsal Root Entry Zone, in 123 patients with spastic disorders localized to the limbs. The micro-techniques and intra-operative electro-stimulation for identification of the nervous structures responsible for the spastic components, can give a substantial reduction of the harmful spasticity, without suppressing the useful muscle tone and impairing the residual motor and sensory functions. The results were effective, with a 1 to 13 year follow-up (5 on average), in 89% of 47 Selective Peripheral Neurotomies of the tibial nerve for spastic foot, in 92% of 53 Selective Posterior Rhizotomies for paraplegia and in 87% of 23 Selective Posterior Rhizotomies for hemiplegia. In the most severe situations ("comfort" indications), correction of the abnormal postures and relief of pain facilitated nursing and physiotherapy. Sometimes there was reappearance of some useful voluntary movements. In the less affected patients ("functional" indications), the suppression of the harmful spastic components made the persistant capacities more effective.

  16. A root zone model for estimating soil water balance and crop yield responses to deficit irrigation in the North China Plain

    NASA Astrophysics Data System (ADS)

    Ma, Y.; Song, X.; Feng, S.

    2012-12-01

    This study proposed a new soil water balance model by quantifying drainage out of the root zone with the simplification of the Darcy's law, which combined the advantages of conceptual and physically based models. This model was connected with the Jensen crop water production function to simulate soil water components and relative crop yield. Field experiments with the winter wheat-summer corn cropping system were conducted in Beijing area in the North China Plain (2007-2009) to evaluate the model. The model could give quite reasonable predictions of soil water content in the root zone with the average root mean square error (RMSE), mean relative error (RE) and model efficiency (EF) of 0.02 cm3/cm3, 6.69% and 0.78, respectively. Furthermore, the predicted soil water flux through the bottom of root zone agreed well with the measured ones supported by the values of RMSE (0.10 mm/d) and EF (0.92). The Jensen crop water production function with the calculated actual evapotranspitation from the soil water balance model could satisfactorily evaluate crop yield response to deficit irrigation with the EF values greater than 0.95 and the RE values lower than 6%. As an application, the model was used to obtain the optimal irrigation management schedules for the hydrologic years of 75%, 50% and 25% in the study area. The average amount of irrigation saving and reduction of water losses through drainage under optimal irrigation alternative were about 175 mm and 101.9 mm, respectively. This study indicates that the developed root zone model is more available for agricultural water management as it has minimal input requirement, robust physical meaning and satisfactory simulation performance.

  17. Translaminar Microendoscopic Herniotomy for Cranially Migrated Lumbar Disc Herniations Encroaching on the Exiting Nerve Root in the Preforaminal and Foraminal Zones

    PubMed Central

    Tono, Osamu; Senba, Hideyuki; Kitamura, Takahiro; Komiya, Norihiro; Oga, Masayoshi; Shidahara, Satoshi

    2013-01-01

    Study Design Case series. Purpose The aim of this study was to describe translaminar microendoscopic herniotomy (TL-MEH) for cranially migrated lumbar disc herniations encroaching on the exiting nerve root in the preforaminal and foraminal zones and to report preliminary results of the procedure. Overview of Literature Conventional interlaminar approaches for preforaminal and foraminal lumbar disc herniations result in extensive removal of the lamina and facet joint to remove disc fragments safely. More destructive approaches increase the risk of postoperative segmental instability. Methods TL-MEH is a minimally invasive procedure for herniotomy via the translaminar approach using a microendoscopic technique. TL-MEH was performed in seven patients with a cranially migrated lumbar disc herniation encroaching on the exiting nerve root. The disc fragments were located in the preforaminal zone in four patients, and in the preforaminal and foraminal zones in three. Results All patients experienced immediate relief from symptoms after surgery and satisfactory results at the final follow-up. Surgical complications, such as a dural tear, nerve injury, and surgical site infection, were not investigated. Conclusions TL-MEH seemed to be an effective and safe alternative minimally invasive surgical option for patients with a cranially migrated lumbar disc herniation encroaching the exiting nerve root in the preforaminal and foraminal zones. PMID:24066214

  18. Measurement of Differential Na+ Efflux from Apical and Bulk Root Zones of Intact Barley and Arabidopsis Plants

    PubMed Central

    Hamam, Ahmed M.; Britto, Dev T.; Flam-Shepherd, Rubens; Kronzucker, Herbert J.

    2016-01-01

    Rapid sodium cycling across the plasma membrane of root cells is widely thought to be associated with Na+ toxicity in plants. However, the efflux component of this cycling is not well understood. Efflux of Na+ from root cells is believed to be mediated by Salt Overly-Sensitive-1, although expression of this Na+/H+ antiporter has been localized to the vascular tissue and root meristem. Here, we used a chambered cuvette system in which the distal root of intact salinized barley and Arabidopsis thaliana plants (wild-type and sos1) were isolated from the bulk of the root by a silicone-acrylic barrier, so that we could compare patterns of 24Na+ efflux in these two regions of root. In barley, steady-state release of 24Na+ was about four times higher from the distal root than from the bulk roots. In the distal root, 24Na+ release was pronouncedly decreased by elevated pH (9.2), while the bulk-root release was not significantly affected. In A. thaliana, tracer efflux was about three times higher from the wild-type distal root than from the wild-type bulk root and also three to four times higher than both distal- and bulk-root fluxes of Atsos1 mutants. Elevated pH also greatly reduced the efflux from wild-type roots. These findings support a significant role of SOS1-mediated Na+ efflux in the distal root, but not in the bulk root. PMID:27014297

  19. Genetic stability, active constituent, and pharmacoactivity of Salvia miltiorrhiza hairy roots and wild plant.

    PubMed

    Yuan, Yuan; Liu, Yunjun; Lu, Dongmei; Huang, Luqi; Liang, Rixin; Yang, Zhaochun; Chen, Shunqin

    2009-01-01

    Salvia miltiorrhiza is an annual plant growing in China, Mongolia, Korea and some other Asian countries. The extract from S. miltiorrhiza roots has been used for supporting healthy cardiovascular and circulatory systems during the last decade. The active constituents of S. miltiorrhiza from different areas vary significantly, and the wild resources are overexploited. To adapt the demand for active constituents of S. miltiorrhiza against cardiovascular-related diseases, alternative materials need to be developed. The aim of the present work was to investigate the possibility of S. miltiorrhiza hairy roots as the alternative materials. The results showed that S. miltiorrhiza hairy roots are genetically stable. The contents of salvianolic acid B and tanshinone IIA, two main active constituents in hairy roots, determined by the assessment of combining flow cytometry and phytochemical analysis, are comparable to or significantly lower than in wild plant roots. The extract from S. miltiorrhiza hairy roots also had similar protection activity for hypoxia and reoxygenation injury in rat cardiac myocytes like that from wild plant roots. S. miltiorrhiza hairy roots may be alternative materials to obtain the drug or healthy food for cardiovascular-related diseases.

  20. Rice (Oryza sativa L.) roots have iodate reduction activity in response to iodine

    PubMed Central

    Kato, Shota; Wachi, Takanori; Yoshihira, Kei; Nakagawa, Takuya; Ishikawa, Akifumi; Takagi, Daichi; Tezuka, Aya; Yoshida, Hideharu; Yoshida, Satoshi; Sekimoto, Hitoshi; Takahashi, Michiko

    2013-01-01

    Although iodine is not an essential nutrient for higher plants, their roots take up and transport the element. However, the exact mechanisms involved in iodine uptake and metabolism in higher plants have yet to be elucidated. In this study, we compared two cultivars differing in iodine tolerance (“Nipponbare” and “Gohyakumangoku”) to increasing levels of I− and IO−3 in the root solutions of water-cultured rice (Oryza sativa L.). We found that IO−3 added to the root solutions was converted to I− in the presence of roots. Iodate reduction occurred over the course of several hours. Furthermore, the iodate reduction activity of “Nipponbare” (iodine-sensitive) and “Gohyakumangoku” (iodine-tolerant) roots increased after adding IO−3 or I−. The roots of barley and soybean also showed iodate reduction activity and the activity responded to iodine treatment either with IO−3 and I−. This study suggests that plant roots biologically reduce iodate to iodide and indicates that the iodate reduction activity of roots responds to external iodine conditions. PMID:23847633

  1. The active zone T-bar--a plasticity module?

    PubMed

    Wichmann, Carolin; Sigrist, Stephan J

    2010-09-01

    The synaptic active zone, the site where Ca(2+)-triggered fusion of synaptic vesicles takes place, is commonly associated with protein-rich, electron-dense cytomatrices. The molecular composition and functional role of active zones, especially in the context of vesicular exo- and endocytosis, are under intense investigation. Per se, Drosophila synapses, which display so-called T-bars as electron-dense specializations, should be a highly suitable model system, as they allow for a combination of efficient genetics with ultrastructural and electrophysiological analyses. However, it needed a biochemical approach of the Buchner laboratory to "molecularly" access the T-bar by identification of the CAST/ERC-family member Bruchpilot as the first T-bar-residing protein. Genetic elimination of Bruchpilot revealed that the protein is essential for T-bar formation, calcium channel clustering, and hence proper vesicle fusion and patterned synaptic plasticity. Recently, Bruchpilot was shown to directly shape the T-bar, likely by adopting an elongated conformation. Moreover, first mechanisms that control the availability of Bruchpilot for T-bar assembly were described. This review seeks to summarize the information on T-bar structure, as well as on functional aspects, formulating the hypothesis that T-bars are genuine "plasticity modules."

  2. Antimicrobial activities of Ichnocarpus frutescens (L.) R.Br. and Hemidesmus indicus R.Br. Roots

    PubMed Central

    Malathy, N S; Sini, S

    2009-01-01

    Hexane, chloroform and aqueous extracts from Hemidesmus indicus and Ichnocarpus frutescens roots were evaluated for their antimicrobial activity. The chloroform extract of both plants showed antibacterial and antifungal activities against the tested organisms. Both the plants showed highest antibacterial and antifungal activity against Eschericia coli and Aspergillus flavus respectively. With increase in concentration of the extract a corresponding increase in diameter of inhibition vgme was observed. The roots of the common substitute of H.Indicus namely Ifrutescenspossess similar antimicrobial properties. PMID:22557326

  3. Solar wind control of auroral zone geomagnetic activity

    NASA Technical Reports Server (NTRS)

    Clauer, C. R.; Mcpherron, R. L.; Searls, C.; Kivelson, M. G.

    1981-01-01

    Solar wind magnetosphere energy coupling functions are analyzed using linear prediction filtering with 2.5 minute data. The relationship of auroral zone geomagnetic activity to solar wind power input functions are examined, and a least squares prediction filter, or impulse response function is designed from the data. Computed impulse response functions are observed to have characteristics of a low pass filter with time delay. The AL index is found well related to solar wind energy functions, although the AU index shows a poor relationship. High frequency variations of auroral indices and substorm expansions are not predictable with solar wind information alone, suggesting influence by internal magnetospheric processes. Finally, the epsilon parameter shows a poorer relationship with auroral geomagnetic activity than a power parameter, having a VBs solar wind dependency.

  4. Root Zone Soil Moisture (RZSM) Estimates Using VHF (240-270 MHZ) Antenna for SoOp (Signal of Opportunity) Receiver for 6U CubeSat Platforms

    NASA Astrophysics Data System (ADS)

    Joseph, A. T.

    2015-12-01

    The main goal of this research is to develop VHF antennas for 6U Cubesat platforms to enable validation of root zone soil moisture (RZSM) estimation algorithms for signal of opportunity (SoOp) remote sensing over the 240-270 MHz frequency band. This study provides a strong foundation for establishing a path for maturing truly global direct surface soil moisture (SM) and RZSM measurement system over a variety of land covers with limited density restrictions. In SoOp methodology, signals transmitted by already existing transmitters, in this case the Military Satellite Communication (MilSatCom) System's UHF Follow-On program, are utilized to measure properties of reflecting targets by recording reflected signals using a simple passive microwave receiver. We developed and will test VHF (240-270 MHz) antenna technology for SoOp receivers for 6U Cubesat platforms and perform measurement of SM and RZSM using the proposed antennas deployed on a ground-based Soil Moisture Active Passive (SMAP) simulator boom truck. We will validate the RZSM and SM estimation algorithms from measured data (where RZSM is defined as the volumetric SM contained in the top 1 m of the soil column). Knowledge of RZSM up to a depth of 1 m and surface SM up to a depth of 0.05 m on a global scale, at a spatial resolution of 1-10 km through moderate-to-heavy vegetation, is critical to understanding global water resources and the vertical moisture gradient in the Earth's surface layer which controls moisture interactions between the soil, vegetation, and atmosphere. Current observations of surface SM from space by L-band radiometers and radars are limited to measurements of surface SM up to a depth of ~0.05 m through moderate amounts of vegetation. Developing bi-static reflectometry using VHF geostationary satellite SoOp creates the potential of directly observing SM and RZSM on a truly global basis from a constellation of small satellite-based receivers in low earth orbit. The technique provides the

  5. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Activities Far East Marine... SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE PORT ZONES Fourteenth Coast Guard District § 3.70-20 Activities Far East Marine Inspection Zone....

  6. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Activities Far East Marine... SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE PORT ZONES Fourteenth Coast Guard District § 3.70-20 Activities Far East Marine Inspection Zone....

  7. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Activities Far East Marine... SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE PORT ZONES Fourteenth Coast Guard District § 3.70-20 Activities Far East Marine Inspection Zone....

  8. The microtubule-associated protein MAP18 affects ROP2 GTPase activity during root hair growth.

    PubMed

    Kang, Erfang; Zheng, Mingzhi; Zhang, Yan; Yuan, Ming; Yalovsky, Shaul; Zhu, Lei; Fu, Ying

    2017-03-17

    Establishment and maintenance of the polar site are important for root hair tip growth. We previously reported that Arabidopsis (Arabidopsis thaliana) MICROTUBULE-ASSOCIATED PROTEIN18 (MAP18) functions in controlling the direction of pollen tube growth and root hair elongation. Additionally, the Rop GTPase ROP2 was reported as a positive regulator of both root hair initiation and tip growth in Arabidopsis. Both loss-of-function of ROP2 or knock-down of MAP18 leads to a decrease in root hair length, whereas overexpression of either MAP18 or ROP2 causes multiple tips or a branching hair phenotype. However, it is unclear whether MAP18 and ROP2 coordinately regulate root hair growth. In the present study, we demonstrate that MAP18 and ROP2 interact genetically and functionally. MAP18 physically interacts with ROP2 in vitro and in vivo and preferentially binds to the inactive form of the ROP2 protein. MAP18 promotes ROP2 activity during root hair tip growth. Further investigation revealed that MAP18 competes with RhoGTPase GDP dissociation inhibitor 1 (AtRhoGDI1)/SUPERCENTIPEDE1 (SCN1) for binding to ROP2, in turn affecting localization of active ROP2 in the plasma membrane of the root hair tip. These results reveal a novel function of MAP18 in the regulation of ROP2 activation during root hair growth.

  9. Quantifying spatiotemporal dynamics of root-zone soil water in a mixed forest on subtropical coastal sand dune using surface ERT and spatial TDR

    NASA Astrophysics Data System (ADS)

    Fan, Junliang; Scheuermann, Alexander; Guyot, Adrien; Baumgartl, Thomas; Lockington, David A.

    2015-04-01

    We jointly used surface electrical resistivity tomography (surface ERT) and spatial time domain reflectometry (spatial TDR) to quantify spatial patterns and seasonal dynamics of root-zone soil water under three contrasting vegetation covers in a sand dune forest of subtropical coastal Australia. We wanted to obtain a better understanding of the applicability of both techniques in these environments as well as investigate vegetation-soil water interactions. Soil temperature and topographic changes were taken into account in soil resistivity interpretation. The results demonstrated the capability of both surface ERT and spatial TDR to spatially monitor root-zone soil water dynamics, with root mean square error (RMSE) <0.018 cm3 cm-3 and absolute deviation <0.034 cm3 cm-3 between gravimetrically derived water content and those derived by the two geophysical techniques. Soil water was depleted to low levels during the dry season but quickly replenished with onset of the wet season. Soil water content profiles revealed obvious differences in water dynamics of the dune sands under different vegetation covers, with highest infiltration and deep drainage under the grassland compared with tree cover. The spatial variation in soil water content due to rainfall interception by trees, root water uptake and preferential infiltration associated with stemflow could be detected by the joint use of surface ERT and spatial TDR. We conclude that surface ERT can be an effective method for quantifying two-dimensional root-zone soil water dynamics and understanding the hydrological processes in these sand dune environments, if complemented by the one-dimensional high-resolution soil water measurements from spatial TDR.

  10. Estimating daily root-zone soil moisture in snow-dominated regions using an empirical soil moisture diagnostic equation

    NASA Astrophysics Data System (ADS)

    Pan, Feifei; Nieswiadomy, Michael

    2016-11-01

    Soil moisture in snow-dominated regions has many important applications including evapotranspiration estimation, flood forecasting, water resource and ecosystem services management, weather prediction and climate modeling, and quantification of denudation processes. A simple and robust empirical approach to estimate root-zone soil moisture in snow-dominated regions using a soil moisture diagnostic equation that incorporates snowfall and snowmelt processes is suggested and tested. A five-water-year dataset (10/1/2010-9/30/2015) of daily precipitation, air temperature, snow water equivalent and soil moistures at three depths (i.e., 5 cm, 20 cm, and 50 cm) at each of 12 Snow Telemetry (SNOTEL) sites across Utah (37.583°N-41.883°N, 110.183°W-112.9°W), is applied to test the proposed method. The first three water years are designated as the parameter-estimation period (PEP) and the last two water years are chosen as the model-testing period (MTP). Applying the estimated soil moisture loss function parameters and other empirical parameters in the soil moisture diagnostic equation in the PEP, soil moistures in three soil columns (0-5 cm, 0-20 cm, and 0-50 cm) are estimated in the MTP. The relatively accurate soil moisture estimations compared to the observations at 12 SNOTEL sites (RMSE ⩽ 6.23 (%V/V), average RMSE = 4.28 (%V/V), correlation coefficient ⩾0.75, average correlation coefficient =0.89, the Nash-Sutcliffe efficient coefficient Ec ⩾ 0.24, average Ec = 0.72) indicate that the soil moisture diagnostic equation is capable of accurately estimating soil moisture in snow-dominated regions after the snowfall and snowmelt processes are included in the soil moisture diagnostic equation.

  11. Spatial Root Zone Soil Moisture Estimation and Forecasting Using the METRIC Evapotranspiration Product and Multivariate Relevance Vector Machines

    NASA Astrophysics Data System (ADS)

    Ticlavilca, A. M.; Torres-Rua, A. F.; Bachour, R.; McKee, M.

    2013-12-01

    Limited access to spatial root zone soil moisture (SM) estimation in agricultural areas restricts enhanced water balance and irrigation scheduling estimations by irrigators and water managers, as well as other possible uses of these soil moisture estimates. Herein, we propose a methodology that allows for spatial SM estimation and forecasts at depths of 0.05, 0.30 and 0.60 m in agricultural areas at a temporal resolution ranging from the present to eight and sixteen days ahead. This methodology is based on a statistical learning model called the Multivariate Relevance Vector Machine (MVRVM). This model is known for its robustness, efficiency, and sparseness. It provides a statistically sound approach to learn from the input-output response patterns contained in the training dataset, and has proven to be superior to traditional algorithms such as Artificial Neural Networks. The MVRVM is used to build a methodology that spatially estimates and predicts current and future soil moisture state based upon historical records of soil moisture and actual crop evapotranspiration. Soil moisture measurements at three different depths acquired by the Utah Water Research Laboratory (UWRL) for agricultural lands in the Lower Sevier River Basin, Utah, are used for this study. The methodology combines the SM data at different depths along with estimates of actual crop evapotranspiration using the Mapping EvapoTranspiration at high Resolution with Internalized Calibration (METRIC) algorithm which uses Landsat TM and ETM+ imagery records. The MVRVM produces good results at current, eight and sixteen days with a reduced computational complexity and suitable real-time implementation. Additionally, spatial bootstrapping analysis is used to evaluate over- and under-fitting and uncertainty in model estimates.

  12. Monitoring the Photosynthetic Apparatus During Space Flight: Interspecific Variation in Chlorophyll Fluorescence Signatures Induced by Different Root Zone Stresses

    NASA Technical Reports Server (NTRS)

    Bubenheim, David L.; Patterson, Mark T.; Kliss, Mark H. (Technical Monitor)

    1996-01-01

    Chlorophyll fluorescence has been used extensively as a tool to indicate stress to the photosynthetic apparatus in green plants. A rise in fluorescence has been attributed to the blockage of photosystem II photochemistry, and patterns of fluorescence decay (quenching) from dark adapted leaves can be related to specific photochemical and non-photochemical deexcitation pathways of light trapped by the photosynthetic apparatus and thus result in characteristically different fluorescence signatures. Four distantly related plant species, Hypocharis radicata (Asteraceae), Brassica rapa (Brassicaceae), Spinacea oleracea (Chenopodiaceae) and Triticum aestivum (Poaceae), were grown hydroponically for three weeks before the initiation of three different root zone stresses (10 mM Cu, 100 mM NaCl and nitrogen deficient nutrition). After 10 days, characteristic fluorescence signatures for each stress could be noted although the degree varied between species. Fast kinetics analysis showed a reduction in plastoquinone pool size for copper and nitrogen stress for all species but a more species specific result with NaCl stress. Photochemical quenching kinetics varied between species and stress treatments from no quenching in S. oleracea in copper treatments to increased photochemical quenching in NaCl treatments. Non-photochemical quenching kinetics demonstrated a distinct pattern between stresses for all species. Copper treatments characteristically exhibited a shallow, flat non-photochemical quenching profile suggesting a general blockage of electron transport whereas NaCl treatments exhibited a slow rising profile that suggested damage to thylakoid acidification kinetics and nitrogen deficiency exhibited a fast rising and declining profile that suggested an altered state 1-state 2 transition regulated by the phosphorylation of LHCII. These results demonstrate characteristic fluorescence signatures for specific plant stresses that may be applied to different, unrelated plant

  13. P-band Radar Retrieval of Root-Zone Soil Moisture: AirMOSS Methodology, Progress, and Improvements

    NASA Astrophysics Data System (ADS)

    Moghaddam, M.; Tabatabaeenejad, A.; Chen, R.

    2015-12-01

    The AirMOSS mission seeks to improve the estimates of the North American Net Ecosystem Exchange (NEE)by providing high-resolution observations of the root zone soil moisture (RZSM) over regions representative of themajor North American biomes. The radar snapshots are used to generate estimates of RZSM. To retrieve RZSM, weuse a discrete scattering model integrated with layered-soil scattering models. The soil moisture profile is representedas a quadratic function in the form of az2 + bz + c, where z is the depth and a, b, and c are the coefficients to beretrieved. The ancillary data necessary to characterize a pixel are available from various databases. We applythe retrieval method to the radar data acquired over AirMOSS sites including Canada's BERMS, Walnut Gulchin Arizona, MOISST in Oklahoma, Tonzi Ranch in California, and Metolius in Oregon, USA. The estimated soilmoisture profile is validated against in-situ soil moisture measurements. We have continued to improve the accuracyof retrievals as the delivery of the RZSMproducts has progressed since 2012. For example, the 'threshold depth' (thedepth up to which the retrieval is mathematically valid) has been reduced from 100 cm to 50 cm after the retrievalaccuracy was assessed both mathematically and physically. Moreover, we progressively change the implementationof the inversion code and its subroutines as we find more accurate and efficient ways of mathematical operations. Thelatest AirMOSS results (including soil moisture maps, validation plots, and scatter plots) as well as all improvementsapplied to the retrieval algorithm, including the one mentioned above, will be reported at the talk, following a briefdescription of the retrieval methodology. Fig. 1 shows a validation plot for a flight over Tonzi Ranch from September2014 (a) and a scatter plot for various threshold depths using 2012 and 2013 data.

  14. Stability of antibacterial activity of Chlorhexidine and Doxycycline in bovine root dentine

    PubMed Central

    Khademi, Abbas Ali; Saleh, Marjan; Khabiri, Masoud; Jahadi, Sanaz

    2014-01-01

    Objective: The aim of this study was to compare the substantivity of chlorhexidine (CHX) and doxycycline bond to the dentin in diffusion disk method. Methods: A total of 92 dentin disks were prepared from Bovine's teeth root. After removing cementum and standardizing disks in weight and outer diameter, they were irrigated with sodium hypochlorite 2.5%, ethylenediaminetetraacetic acid 17% and sterile saline and sterilled in autoclave. Then, the first group (n = 36) were irrigated with chlrohexine 2% and the second group (n = 36) with doxycycline 100 mg/mL, each for a period of 10 min. The third group (n = 20) was considered as the control group. Samples were divided into four subgroups, which after 1 day, 3, 6, and 12 weeks were incubated in plates containing Muller Hinton agar broth and Enterococcus faecalis for a period of 48 h at 37°C temperature; then the diameter of the zone of inhibition was measured. The antimicrobial effect of irrigating solutions without binding to the dentin was also studied using the plate well method. One-way and univariate variance tests as well as Post-hoc Tukey were used for data analyses. Findings: The diameter of the zone of inhibition of doxycycline group was significantly more than the CHX group from the beginning to the 3rd week (P < 0.005). After 3rd week, mean diameter in doxycycline group declined as compared with the CHX group up to 12th week (P < 0.005). The difference between means in two groups was not significant in the 3rd week (P = 0.87). Conclusion: The results of this study show that CHX and doxycycline show antibacterial activity for 12 weeks; although after 3rd week, the substantivity of CHX was significantly greater than doxycycline. Both of these irrigants can be used in other pharmacological and medical fields whenever a long-lasting antibacterial action is needed. PMID:24991631

  15. 78 FR 55057 - Foreign-Trade Zone 134-Chattanooga, Tennessee; Authorization of Production Activity; Komatsu...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 134--Chattanooga, Tennessee; Authorization of Production Activity; Komatsu America Corporation, (Construction and Forestry Equipment), Chattanooga, Tennessee On...

  16. 77 FR 61381 - Foreign-Trade Zone 7-Mayaguez, Puerto Rico, Authorization of Production Activity, Baxter...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-09

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 7--Mayaguez, Puerto Rico, Authorization of Production Activity, Baxter Healthcare of Puerto Rico, (Pharmaceutical and Nutritional Intravenous Bags...

  17. 78 FR 36523 - Foreign-Trade Zone 84-Houston, Texas; Authorization of Production Activity; Toshiba International...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 84--Houston, Texas; Authorization of Production Activity; Toshiba International Corporation; (Hybrid Electric Vehicle Motors and Generators Production);...

  18. Effects of elevated root zone CO2 on xerophytic shrubs in re-vegetated sandy dunes at smaller spatial and temporal scales.

    PubMed

    Lei, Huang; Zhishan, Zhang

    2015-01-01

    The below-ground CO2 concentration in some crusted soils or flooded fields is usually ten or hundred times larger than the normal levels. Recently, a large number of studies have focused on elevated CO2 in the atmosphere; however, only few have examined the influence of elevated root zone CO2 on plant growth and vegetation succession. In the present study, a closed-air CO2 enrichment (CACE) system was designed to simulate elevated CO2 concentrations in the root zones. The physio-ecological characteristics of two typical xerophytic shrubs C. korshinskii and A. ordosica in re-vegetated desert areas were investigated at different soil CO2 concentrations from March 2011 to October 2013. Results showed that plant growth, phenophase, photosynthetic rate, stomatal conductance, transpiration rate, and water use efficiency for the two xerophytic shrubs were all increased at first and then decreased with increasing soil CO2 concentrations, and the optimal soil CO2 concentration thresholds for C. korshinskii and A. ordosica were 0.554 and 0.317%, respectively. And A. ordosica was more tolerate to root zone CO2 variation when compared with C. korshinskii, possible reasons and vegetation succession were also discussed.

  19. Simultaneous monitoring of electrical capacitance and water uptake activity of plant root system

    NASA Astrophysics Data System (ADS)

    Cseresnyés, Imre; Takács, Tünde; Füzy, Anna; Rajkai, Kálmán

    2014-10-01

    Pot experiments were designed to test the applicability of root electrical capacitance measurement for in situ monitoring of root water uptake activity by growing cucumber and bean cultivars in a growth chamber. Half of the plants were inoculated with Funneliformis mosseae arbuscular mycorrhizal fungi, while the other half served as non-infected controls. Root electrical capacitance and daily transpiration were monitored during the whole plant ontogeny. Phenology-dependent changes of daily transpiration (related to root water uptake) and root electrical capacitance proved to be similar as they showed upward trends from seedling emergence to the beginning of flowering stage, and thereafter decreased continuously during fruit setting. A few days after arbuscular mycorrhizal fungi-colonization, daily transpiration and root electrical capacitance of infected plants became significantly higher than those of non-infected counterparts, and the relative increment of the measured parameters was greater for the more highly mycorrhizal-dependent bean cultivar compared to that of cucumber. Arbuscular mycorrhizal fungi colonization caused 29 and 69% relative increment in shoot dry mass for cucumbers and beans, respectively. Mycorrhization resulted in 37% increase in root dry mass for beans, but no significant difference was observed for cucumbers. Results indicate the potential of root electrical capacitance measurements for monitoring the changes and differences of root water uptake rate.

  20. Spatial distribution of enzyme activities along the root and in the rhizosphere of different plants

    NASA Astrophysics Data System (ADS)

    Razavi, Bahar S.; Zarebanadkouki, Mohsen; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2015-04-01

    Extracellular enzymes are important for decomposition of many biological macromolecules abundant in soil such as cellulose, hemicelluloses and proteins. Activities of enzymes produced by both plant roots and microbes are the primary biological drivers of organic matter decomposition and nutrient cycling. So far acquisition of in situ data about local activity of different enzymes in soil has been challenged. That is why there is an urgent need in spatially explicit methods such as 2-D zymography to determine the variation of enzymes along the roots in different plants. Here, we developed further the zymography technique in order to quantitatively visualize the enzyme activities (Spohn and Kuzyakov, 2013), with a better spatial resolution We grew Maize (Zea mays L.) and Lentil (Lens culinaris) in rhizoboxes under optimum conditions for 21 days to study spatial distribution of enzyme activity in soil and along roots. We visualized the 2D distribution of the activity of three enzymes:β-glucosidase, leucine amino peptidase and phosphatase, using fluorogenically labelled substrates. Spatial resolution of fluorescent images was improved by direct application of a substrate saturated membrane to the soil-root system. The newly-developed direct zymography shows different pattern of spatial distribution of enzyme activity along roots and soil of different plants. We observed a uniform distribution of enzyme activities along the root system of Lentil. However, root system of Maize demonstrated inhomogeneity of enzyme activities. The apical part of an individual root (root tip) in maize showed the highest activity. The activity of all enzymes was the highest at vicinity of the roots and it decreased towards the bulk soil. Spatial patterns of enzyme activities as a function of distance from the root surface were enzyme specific, with highest extension for phosphatase. We conclude that improved zymography is promising in situ technique to analyze, visualize and quantify

  1. Correlation between calmodulin activity and gravitropic sensitivity in primary roots of maize

    NASA Technical Reports Server (NTRS)

    Stinemetz, C. L.; Kuzmanoff, K. M.; Evans, M. L.; Jarrett, H. W.

    1987-01-01

    Recent evidence indicates a role for calcium and calmodulin in the gravitropic response of primary roots of maize (Zea mays, L.). We examined this possibility by testing the relationship between calmodulin activity and gravitropic sensitivity in roots of the maize cultivars Merit and B73 x Missouri 17. Roots of the Merit cultivar require light to the gravitropically competent. The gravitropic response of the Missouri cultivar is independent of light. The occurrence of calmodulin in primary roots of these maize cultivars was tested by affinity gel chromatography followed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis with bovine brain calmodulin as standard. The distribution of calmodulin activity was measured using both the phosphodiesterase and NAD kinase assays for calmodulin. These assays were performed on whole tissue segments, crude extracts, and purified extracts. In light-grown seedlings of the Merit cultivar or in either dark- or light-grown seedlings of the Missouri cultivar, calmodulin activity per millimeter of root tissue was about 4-fold higher in the apical millimeter than in the subtending 3 millimeters. Calmodulin activity was very low in the apical millimeter of roots of dark-grown (gravitropically nonresponsive) seedlings of the Merit cultivar. Upon illumination, the calmodulin activity in the apical millimeter increased to a level comparable to that of light-grown seedlings and the roots became gravitropically competent. The time course of the development of gravitropic sensitivity following illumination paralleled the time course of the increase in calmodulin activity in the apical millimeter of the root. The results are consistent with the suggestion that calmodulin plays an important role in the gravitropic response of roots.

  2. A concise synthesis of optically active solanacol, the germination stimulant for seeds of root parasitic weeds.

    PubMed

    Kumagai, Hiroshi; Fujiwara, Mami; Kuse, Masaki; Takikawa, Hirosato

    2015-01-01

    Solanacol, isolated from tobacco (Nicotiana tabacum L.), is a germination stimulant for seeds of root parasitic weeds. A concise synthesis of optically active solanacol has been achieved by employing enzymatic resolution as a key step.

  3. Regulation of nitrogen uptake and assimilation: Effects of nitrogen source and root-zone and aerial environment on growth and productivity of soybean

    NASA Technical Reports Server (NTRS)

    Raper, C. David, Jr.

    1994-01-01

    The interdependence of root and shoot growth produces a functional equilibrium as described in quantitative terms by numerous authors. It was noted that bean seedlings grown in a constant environment tended to have a constant distribution pattern of dry matter between roots and leaves characteristic of the set of environmental conditions. Disturbing equilibrium resulted in a change in relative growth of roots and leaves until the original ratio was restored. To define a physiological basis for regulation of nitrogen uptake within the balance between root and shoot activities, the authors combined a partioning scheme and a utilization priority assumption in which: (1) all carbon enters the plant through photosynthesis in leaves and all nitrogen enters the plant through active uptake by roots, (2) nitrogen uptake by roots and secretion into the xylem for transport to the shoots are active processes, (3) availability of exogenous nitrogen determines concentration of soluble carbohydrates within the roots, (4) leaves are a source and a sink for carbohydrates, and (5) the requirement for nitrogen by leaf growth is proportionally greater during initiation and early expansion than during later expansion.

  4. Mycorrhiza-induced lower oxidative burst is related with higher antioxidant enzyme activities, net H2O2 effluxes, and Ca2+ influxes in trifoliate orange roots under drought stress.

    PubMed

    Zou, Ying-Ning; Huang, Yong-Ming; Wu, Qiang-Sheng; He, Xin-Hua

    2015-02-01

    Mechanisms of arbuscular mycorrhiza (AM)-induced lower oxidative burst of host plants under drought stress (DS) are not elucidated. A noninvasive microtest technology (NMT) was used to investigate the effects of Funneliformis mosseae on net fluxes of root hydrogen peroxide (H2O2) and calcium ions (Ca2+) in 5-month-old Poncirus trifoliata, in combination with catalase (CAT) and superoxide dismutase (SOD) activities as well as tissue superoxide radical (O2•-) and H2O2 concentrations under DS and well-watered (WW) conditions. A 2-month DS (55% maximum water holding capacity of growth substrates) significantly inhibited AM fungal root colonization, while AM symbiosis significantly increased plant biomass production, irrespective of water status. F. mosseae inoculation generally increased SOD and CAT activity but decreased O2•- and H2O2 concentrations in leaves and roots under WW and DS. Compared with non-AM seedlings, roots of AM seedlings had significantly higher net H2O2 effluxes and net Ca2+ influxes, especially in the meristem zone, but lower net H2O2 efflux in the elongation zone. Net Ca2+ influxes into roots were significantly positively correlated with root net H2O2 effluxes but negatively with root H2O2 concentrations. Results from this study suggest that AM-induced lower oxidative burst is related with higher antioxidant enzyme activities, root net H2O2 effluxes, and Ca2+ influxes under WW and DS.

  5. Super-resolution microscopy of the synaptic active zone

    PubMed Central

    Ehmann, Nadine; Sauer, Markus; Kittel, Robert J.

    2015-01-01

    Brain function relies on accurate information transfer at chemical synapses. At the presynaptic active zone (AZ) a variety of specialized proteins are assembled to complex architectures, which set the basis for speed, precision and plasticity of synaptic transmission. Calcium channels are pivotal for the initiation of excitation-secretion coupling and, correspondingly, capture a central position at the AZ. Combining quantitative functional studies with modeling approaches has provided predictions of channel properties, numbers and even positions on the nanometer scale. However, elucidating the nanoscopic organization of the surrounding protein network requires direct ultrastructural access. Without this information, knowledge of molecular synaptic structure-function relationships remains incomplete. Recently, super-resolution microscopy (SRM) techniques have begun to enter the neurosciences. These approaches combine high spatial resolution with the molecular specificity of fluorescence microscopy. Here, we discuss how SRM can be used to obtain information on the organization of AZ proteins. PMID:25688186

  6. Magnetic fields over active tectonic zones in ocean

    USGS Publications Warehouse

    Kopytenko, Yu. A.; Serebrianaya, P.M.; Nikitina, L.V.; Green, A.W.

    2002-01-01

    The aim of our work is to estimate the electromagnetic effects that can be detected in the submarine zones with hydrothermal activity. It is known that meso-scale flows appear in the regions over underwater volcanoes or hot rocks. Their origin is connected with heat flux and hot jets released from underwater volcanoes or faults in a sea bottom. Values of mean velocities and turbulent velocities in plumes were estimated. Quasiconstant magnetic fields induced by a hot jet and a vortex over a plume top are about 1-40 nT. Variable magnetic fields are about 0.1-1 nT. These magnetic disturbances in the sea medium create an additional natural electromagnetic background that must be considered when making detailed magnetic surveys. ?? 2002 Elsevier Science Ltd. All rights reserved.

  7. Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone

    USGS Publications Warehouse

    Bachand, Philip A.M.; Bachand, Sandra M.; Fleck, Jacob A.; Alpers, Charles N.; Stephenson, Mark; Windham-Myers, Lisamarie

    2014-01-01

    Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~ 3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m− 2 for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m− 2. These exports are

  8. Reprint of "Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone".

    PubMed

    Bachand, P A M; Bachand, S M; Fleck, J A; Alpers, C N; Stephenson, M; Windham-Myers, L

    2014-06-15

    Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1μgm(-2) for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3μgm(-2). These exports are within the range

  9. Root growth inhibition by NH(4)(+) in Arabidopsis is mediated by the root tip and is linked to NH(4)(+) efflux and GMPase activity.

    PubMed

    Li, Qing; Li, Bao-Hai; Kronzucker, Herbert J; Shi, Wei-Ming

    2010-09-01

    Root growth in higher plants is sensitive to excess ammonium (NH(4)(+)). Our study shows that contact of NH(4)(+) with the primary root tip is both necessary and sufficient to the development of arrested root growth under NH(4)(+) nutrition in Arabidopsis. We show that cell elongation and not cell division is the principal target in the NH(4)(+) inhibition of primary root growth. Mutant and expression analyses using DR5:GUS revealed that the growth inhibition is furthermore independent of auxin and ethylene signalling. NH(4)(+) fluxes along the primary root, measured using the Scanning Ion-selective Electrode Technique, revealed a significant stimulation of NH(4)(+) efflux at the elongation zone following treatment with elevated NH(4)(+), coincident with the inhibition of root elongation. Stimulation of NH(4)(+) efflux and inhibition of cell expansion were significantly more pronounced in the NH(4)(+)-hypersensitive mutant vtc1-1, deficient in the enzyme GDP-mannose pyrophosphorylase (GMPase). We conclude that both restricted transmembrane NH(4)(+) fluxes and proper functioning of GMPase in roots are critical to minimizing the severity of the NH(4)(+) toxicity response in Arabidopsis.

  10. Glucose-induced activation of rubidium transport and water flux in sunflower root systems.

    PubMed

    Quintero, J M; Molina, R; Fournier, J M; Benlloch, M; Ramos, J

    2001-01-01

    Excised 20-d-old sunflower roots (Helianthus annuus L. cv. Sun-Gro 393) were used to study the effect of different sugars on rubidium and water fluxes. The roots sensed and absorbed glucose from the external medium inducing the activation of rubidium accumulated in the root (Rb(+) root), the flux of exuded rubidium (J(Rb)) and, to a lesser degree, the exudation rate (J(v)). These effects were also triggered by fructose, but not by 6-deoxyglucose (6-dG), a glucose analogue which is not a substrate for hexokinase (HXK). The effect of 2-deoxyglucose (2-dG), an analogue that is phosphorylated but not further metabolized, was complex, suggesting an inhibitory effect on solute transport to the xylem. The amounts of glucose required to activate rubidium and water fluxes were similar to those previously reported to regulate different processes in other plants (0.5--10 mM). When sorbitol was used instead of glucose, neither rubidium uptake (Rb(+) root plus J(Rb)) nor J(v) was activated. It is proposed that glucose present in the root plays an important signalling role in the regulation of Rb(+) (K(+)) and water transport in plant roots.

  11. Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNA

    PubMed Central

    Vandenkoornhuyse, Philippe; Mahé, Stéphane; Ineson, Philip; Staddon, Phil; Ostle, Nick; Cliquet, Jean-Bernard; Francez, André-Jean; Fitter, Alastair H.; Young, J. Peter W.

    2007-01-01

    Plant roots harbor a large diversity of microorganisms that have an essential role in ecosystem functioning. To better understand the level of intimacy of root-inhabiting microbes such as arbuscular mycorrhizal fungi and bacteria, we provided 13CO2 to plants at atmospheric concentration during a 5-h pulse. We expected microbes dependent on a carbon flux from their host plant to become rapidly labeled. We showed that a wide variety of microbes occurred in roots, mostly previously unknown. Strikingly, the greatest part of this unsuspected diversity corresponded to active primary consumers. We found 17 bacterial phylotypes co-occurring within roots of a single plant, including five potentially new phylotypes. Fourteen phylotypes were heavily labeled with the 13C. Eight were phylogenetically close to Burkholderiales, which encompass known symbionts; the others were potentially new bacterial root symbionts. By analyzing unlabeled and 13C-enriched RNAs, we demonstrated differential activity in C consumption among these root-inhabiting microbes. Arbuscular mycorrhizal fungal RNAs were heavily labeled, confirming the high carbon flux from the plant to the fungal compartment, but some of the fungi present appeared to be much more active than others. The results presented here reveal the possibility of uncharacterized root symbioses. PMID:17939995

  12. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone

    DOE PAGES

    Feng, Huan; Tappero, Ryan; Zhang, Weiguo; ...

    2015-07-26

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g.,more » Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. As a result, this micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system.« less

  13. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone

    SciTech Connect

    Feng, Huan; Tappero, Ryan; Zhang, Weiguo; Liu, Wenliang; Yu, Lizhong; Qian, Yu; Wang, Jun; Wang, Jia -Jun; Eng, Christopher; Liu, Chang -Jun; Jones, Keith W.

    2015-07-26

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g., Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. As a result, this micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system.

  14. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone.

    PubMed

    Feng, Huan; Zhang, Weiguo; Liu, Wenliang; Yu, Lizhong; Qian, Yu; Wang, Jun; Wang, Jia-Jun; Eng, Christopher; Liu, Chang-Jun; Jones, Keith W; Tappero, Ryan

    2015-12-01

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g., Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. This micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system.

  15. PHABULOSA Controls the Quiescent Center-Independent Root Meristem Activities in Arabidopsis thaliana

    PubMed Central

    Sebastian, Jose; Ryu, Kook Hui; Zhou, Jing; Tarkowská, Danuše; Tarkowski, Petr; Cho, Young-Hee; Yoo, Sang-Dong; Kim, Eun-Sol; Lee, Ji-Young

    2015-01-01

    Plant growth depends on stem cell niches in meristems. In the root apical meristem, the quiescent center (QC) cells form a niche together with the surrounding stem cells. Stem cells produce daughter cells that are displaced into a transit-amplifying (TA) domain of the root meristem. TA cells divide several times to provide cells for growth. SHORTROOT (SHR) and SCARECROW (SCR) are key regulators of the stem cell niche. Cytokinin controls TA cell activities in a dose-dependent manner. Although the regulatory programs in each compartment of the root meristem have been identified, it is still unclear how they coordinate one another. Here, we investigate how PHABULOSA (PHB), under the posttranscriptional control of SHR and SCR, regulates TA cell activities. The root meristem and growth defects in shr or scr mutants were significantly recovered in the shr phb or scr phb double mutant, respectively. This rescue in root growth occurs in the absence of a QC. Conversely, when the modified PHB, which is highly resistant to microRNA, was expressed throughout the stele of the wild-type root meristem, root growth became very similar to that observed in the shr; however, the identity of the QC was unaffected. Interestingly, a moderate increase in PHB resulted in a root meristem phenotype similar to that observed following the application of high levels of cytokinin. Our protoplast assay and transgenic approach using ARR10 suggest that the depletion of TA cells by high PHB in the stele occurs via the repression of B-ARR activities. This regulatory mechanism seems to help to maintain the cytokinin homeostasis in the meristem. Taken together, our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain. PMID:25730098

  16. Phytochemical and antifungal activities of Uvaria. chamae leaves and roots, Spondias mombin leaves and bark and Combretum racemosum leaves.

    PubMed

    Okwuosa, O M T B; Chukwura, E I; Chukwuma, G O; Okwuosa, C N; Enweani, I B; Agbakoba, N R; Chukwuma, C M; Manafa, P O; Umedum, C U

    2012-12-01

    The effects of crude and dilutions of aqueous, methanolic and n-hexane extracts of Uvaria chamae (roots and leaves), Spondias mombin (leaves and bark) and Combretum racemosum (Leaves), on pathogenic candida albicans and aspergillus niger was studied. The aim was to contribute to the search for a cheaper, conventional cure for both fungi. Phytochemical analysis revealed varying degrees of alkaloids, glycosides, saponin, lipid and oil, tannins, flavonoids, terpenoids and acids. Agar diffusion method was used for anti fungal assay. Minimum inhibitory concentration (mic) used was 10 mg/ml of extract and dilutions of the non polar solvents of 10 (-1) and 10(-2) was used. Results showed that none of the plant parts was active against aspergillus niger. Combretum racemosum had no antifungal effect on tested organisms as well as the different dilutions. However crude methanolic extract of uvaria (roots and leaves), spondias ( bark and leaves ), and n-hexane extracts of uvaria (leaves and roots), produced anti candidal effects with diameters in this order 14.67 +/- 0.72mm, 10.67 +/- 0.52 mm, 11.00 +/- 0.47 mm, 15.00 +/- 0.47 mm, and 14.67 +/- 0.72 mm respectively. Some of the plant parts especially uvaria had zones of inhibition at a confidence limit comparable with control drug which is ketoconazole and it had inhibitory effects at a diameter of 20.06 +/- 0.40 mm.

  17. The use of root gall ratings to determine high risk zones in cotton fields infested by Meloidogyne Incognita

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cotton farmers need a reliable, accurate, and inexpensive method for determining the potential threat of root-knot nematodes (RKN) to cotton within individual fields for site specific application of nematicides. Evaluation of cotton roots for RKN galling at harvest may be an alternative to soil ana...

  18. Mercury net methylation in five tropical flood plain regions of Brazil: high in the root zone of floating macrophyte mats but low in surface sediments and flooded soils.

    PubMed

    Guimarães, J R; Meili, M; Hylander, L D; de Castro e Silva, E; Roulet, M; Mauro, J B; de Lemos, R

    2000-10-16

    1.8 to 35%. Methylation was lower in washed roots than in untreated roots of E. azurea and methylation in solids isolated from the roots, was higher than in sediments but lower than in untreated roots. This indicates that the methylation in roots zones occurs mainly in the root-associated solids. Floating meadows are sites of intense production of biomass and of highly bioavailable MeHg and appear to be an essential link of the MeHg cycle in tropical aquatic systems.

  19. The locations and amounts of endogenous ions and elements in the cap and elongating zone of horizontally oriented roots of Zea mays L.: an electron-probe EDS study

    NASA Technical Reports Server (NTRS)

    Moore, R.; Cameron, I. L.; Hunter, K. E.; Olmos, D.; Smith, N. K.

    1987-01-01

    We used quantitative electron-probe energy-dispersive x-ray microanalysis to localize endogenous Na, Cl, K, P, S, Mg and Ca in cryofixed and freeze-dried cryosections of the cap (i.e. the putative site of graviperception) and elongating zone (i.e. site of gravicurvature) of horizontally oriented roots of Zea mays. Ca, Na, Cl, K and Mg accumulate along the lower side of caps of horizontally oriented roots. The most dramatic asymmetries of these ions occur in the apoplast, especially the mucilage. We could not detect any significant differences in the concentrations of these ions in the central cytoplasm of columella cells along the upper and lower sides of caps of horizontally-oriented roots. However, the increased amounts of Na, Cl, K and Mg in the longitudinal walls of columella cells along the lower side of the cap suggest that these ions may move down through the columella tissue of horizontally-oriented roots. Ca also accumulates (largely in the mucilage) along the lower side of the elongating zone of horizontally-oriented roots, while Na, P, Cl and K tend to accumulate along the upper side of the elongating zone. Of these ions, only K increases in concentration in the cytoplasm and longitudinal walls of cortical cells in the upper vs lower sides of the elongating zone. These results indicate that (1) gravity-induced asymmetries of ions differ significantly in the cap and elongating zone of graviresponding roots, (2) Ca accumulates along the lower side of the cap and elongating zone of graviresponding roots, (3) increased growth of the upper side of the elongating zone of horizontally-oriented roots correlates positively with increased amounts of K in the cytoplasm and longitudinal walls of cortical cells, and (4) the apoplast (especially the mucilage) may be an important component of the pathway via which ions move in graviresponding rots of Zea mays. These results are discussed relative to mechanisms for graviperception and gravicurvature of roots.

  20. Antimicrobial and antileishmanial activities of diterpenoids isolated from the roots of Salvia deserta

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Four diterpenes with biological activity were isolated from Salvia deserta roots. Taxodione was considered leishmanicidal, with IC50 value of 0.46 µg/mL against Leishimania donovani and also exhibited antifungal and antimicrobial activities. Ferruginol displayed the greatest activity (24-h IC50 1.29...

  1. Auxin-mediated cell cycle activation during early lateral root initiation.

    PubMed

    Himanen, Kristiina; Boucheron, Elodie; Vanneste, Steffen; de Almeida Engler, Janice; Inzé, Dirk; Beeckman, Tom

    2002-10-01

    Lateral root formation can be divided into two major phases: pericycle activation and meristem establishment. In Arabidopsis, the first lateral root initiation event is spatially and temporally asynchronous and involves a limited number of cells in the xylem pericycle. To study the molecular regulation during pericycle activation, we developed a lateral root-inducible system. Successive treatments with an auxin transport inhibitor and exogenous auxin were used to prevent the first formative divisions and then to activate the entire pericycle. Our morphological and molecular data show that, in this inducible system, xylem pericycle activation was synchronized and enhanced to cover the entire length of the root. The results also indicate that the inducible system can be considered a novel in planta system for the study of synchronized cell cycle reactivation. In addition, the expression patterns of Kip-Related Protein2 (KRP2) in the pericycle and its ectopic expression data revealed that the cyclin-dependent kinase inhibitor plays a significant role in the regulation of lateral root initiation. KRP2 appears to regulate early lateral root initiation by blocking the G1-to-S transition and to be regulated transcriptionally by auxin.

  2. Production of anthraquinones, phenolic compounds and biological activities from hairy root cultures of Polygonum multiflorum Thunb.

    PubMed

    Thiruvengadam, Muthu; Praveen, Nagella; Kim, Eun-Hye; Kim, Seung-Hyun; Chung, Ill-Min

    2014-05-01

    Polygonum multiflorum Thunb. is a highly important medicinal plant producing anthraquinones (emodin and physcion) and phenolic compounds which has pharmaceutical use. In vitro seedling explants such as roots, internodals, nodals and leaves were inoculated with A. rhizogenes strain KCTC 2703. Transformed roots were induced from internodals and leaf explants. Six transgenic clones of hairy roots were established and confirmed by polymerase chain reaction (PCR) and reverse transcription-PCR (RT-PCR) using rolC specific primers. Hairy roots cultured using MS liquid medium supplemented with 30 g/l sucrose showed highest accumulation of biomass (99.05 g/l FW [fresh weight] and 10.95 g/l DW [dry weight]) and highest production of anthraquinones content (emodin 211.32 μg/g DW and physcion 353.23 μg/g DW) were observed at 20 days. Nearly 9.5-fold increment of biomass was evident in suspension cultures at 20 days of culture and hairy root biomass produced in suspension cultures possessed 3.7- and 3.5-fold higher content of emodin and physcion, respectively, when compared with the untransformed control roots. MS basal liquid medium was superior for the growth of hairy roots and production of anthraquinones compared with other culture media evaluated (SH, B5 and N6), with MS-basal liquid medium supplemented with 30 g/l sucrose was optimal for secondary metabolite production. A total of 23 polyphenolic compounds were identified and quantified from P. multiflorum untransformed and hairy roots, which includes hydroxybenzoic acids, hydroxycinnamic acids, flavonols and other groups of phenolic compounds. The ultra-performance liquid chromatography (UPLC) analysis of the phenolic compounds profile revealed that pyrogallol, hesperidin, naringenin and formononetin were higher in hairy roots compared to untransformed roots. The total phenolics, flavonoids content, antioxidant and antimicrobial activity was high in hairy roots compared to untransformed roots. This is the first

  3. Adsorption studies of methylene blue and phenol onto vetiver roots activated carbon prepared by chemical activation.

    PubMed

    Altenor, Sandro; Carene, Betty; Emmanuel, Evens; Lambert, Jacques; Ehrhardt, Jean-Jacques; Gaspard, Sarra

    2009-06-15

    Vetiver roots have been utilized for the preparation of activated carbon (AC) by chemical activation with different impregnation ratios of phosphoric acid, X(P) (gH(3)PO(4)/g precursor): 0.5:1; 1:1 and 1.5:1. Textural characterization, determined by nitrogen adsorption at 77K shows that mixed microporous and mesoporous structures activated carbons (ACs) with high surface area (>1000 m(2)/g) and high pore volume (up to 1.19 cm(3)/g) can be obtained. The surface chemical properties of these ACs were investigated by X-ray photoelectron spectroscopy (XPS) and Boehm titration. Their textural and chemical characteristics were compared to those of an AC sample obtained by steam activation of vetiver roots. Classical molecules used for characterizing liquid phase adsorption, phenol and methylene blue (MB), were used. Adsorption kinetics of MB and phenol have been studied using commonly used kinetic models, i.e., the pseudo-first-order model, the pseudo-second-order model, the intraparticle diffusion model and as well the fractal, BWS (Brouers, Weron and Sotolongo) kinetic equation. The correlation coefficients (R(2)) and the normalized standard deviation Deltaq (%) were determined showing globally, that the recently derived fractal kinetic equation could best describe the adsorption kinetics for the adsorbates tested here, indicating a complex adsorption mechanism. The experimental adsorption isotherms of these molecules on the activated carbon were as well analysed using four isotherms: the classical Freundlich, Langmuir, Redlich-Peterson equations, but as well the newly published deformed Weibull Brouers-Sotolongo isotherm. The results obtained from the application of the equations show that the best fits were achieved with the Brouers-Sotolongo equation and with the Redlich-Peterson equation. Influence of surface functional groups towards MB adsorption is as well studied using various ACs prepared from vetiver roots and sugar cane bagasse. Opposite effects governing MB

  4. A deuterium-based labeling technique for the investigation of rooting depths, water uptake dynamics and unsaturated zone water transport in semiarid environments

    NASA Astrophysics Data System (ADS)

    Beyer, M.; Koeniger, P.; Gaj, M.; Hamutoko, J. T.; Wanke, H.; Himmelsbach, T.

    2016-02-01

    Non- or minimum-invasive methods for the quantification of rooting depths of plants are rare, in particular in (semi-)arid regions; yet, this information is crucial for the parameterization of SVAT (Soil-Vegetation-Atmosphere Transfer) models and understanding of processes within the hydrological cycle. We present a technique utilizing the stable isotope deuterium (2H) applied as artificial tracer to investigate the vertical extent of the root zone, characterize water uptake dynamics of trees and shrubs at different depths and monitor transport of water through the unsaturated zone of dry environments. One liter of 35% deuterated water (2H2O) was punctually applied at several depths (0.5 m, 1 m, 2 m, 2.5 m and 4 m) at six different plots at a natural forested site in the Cuvelai-Etosha Basin (CEB), Namibia/Angola. Subsequently, uptake of the tracer was monitored by collecting plant samples (xylem and transpired water) up to seven days after tracer injection. Soil profiles at the plots were taken after the campaign and again after six months in order to evaluate the transport and distribution of 2H within the unsaturated zone. Of 162 plant samples taken, 31 samples showed clear signals of artificially introduced 2H, of which all originate from the plots labeled up to 2 m depth. No artificially injected 2H was found in plants when tracer application occurred deeper than 2 m. Results further indicate a sharing of water resources between the investigated shrubs and trees in the upper 1 m whilst tree roots seem to have better access to deeper layers of the unsaturated zone. The soil profiles taken after six months reveal elevated 2H-concentrations from depths as great as 4 m up to 1 m below surface indicating upward transport of water vapor. Purely diffuse transport towards the soil surface yielded an estimated 0.4 mm over the dry season. Results are of particular significance for a more precise parameterization of SVAT models and the formulation of water balances in

  5. Depth of the biologically active zone in upland habitats at the Hanford Site, Washington: Implications for remediation and ecological risk management.

    PubMed

    Sample, Bradley E; Lowe, John; Seeley, Paul; Markin, Melanie; McCarthy, Chris; Hansen, Jim; Aly, Alaa H

    2015-01-01

    Soil invertebrates, mammals, and plants penetrate and exploit the surface soil layer (i.e., the biologically active zone) to varying depths. As the US Department of Energy remediates radioactive and hazardous wastes in soil at the Hanford Site, a site-specific definition of the biologically active zone is needed to identify the depth to which remedial actions should be taken to protect the environment and avoid excessive cleanup expenditures. This definition may then be considered in developing a point of compliance for remediation in accordance with existing regulations. Under the State of Washington Model Toxic Control Act (MTCA), the standard point of compliance for soil cleanup levels with unrestricted land use is 457 cm (15 ft) below ground surface. When institutional controls are required to control excavations to protect people, MTCA allows a conditional point of compliance to protect biological resources based on the depth of the biologically active zone. This study was undertaken to identify and bound the biologically active zone based on ecological resources present at the Hanford Site. Primary data were identified describing the depths to which ants, mammals, and plants may exploit the surface soil column at the Hanford Site and other comparable locations. The maximum depth observed for harvester ants (Pogonomyrmex spp.) was 270 cm (8.9 ft), with only trivial excavation below 244 cm (8 ft). Badgers (Taxidea taxus) are the deepest burrowing mammal at the Hanford Site, with maximum burrow depths of 230 cm (7.6 ft); all other mammals did not burrow below 122 cm (4 ft). Shrubs are the deepest rooting plants with rooting depths to 300 cm (9.8 ft) for antelope bitterbrush (Purshia tridentata). The 2 most abundant shrub species did not have roots deeper than 250 cm (8.2 ft). The deepest rooted forb had a maximum root depth of 240 cm (7.9 ft). All other forbs and grasses had rooting depths of 200 cm (6.6 ft) or less. These data indicate that the biologically

  6. Hydrothermal mineralogy and fluid inclusions chemistry to understand the roots of active geothermal systems

    NASA Astrophysics Data System (ADS)

    Chambefort, I. S.; Dilles, J. H.; Heinrich, C.

    2013-12-01

    An integrated study to link magmatic textures, magmatic mineral compositions, hydrothermal alteration zoning, hydrothermal mineral chemistry, and fluid inclusion compositions has been undertaken to link an intrusive complex and its degassing alteration halo with their surface equivalent in an active geothermal system. Ngatamariki geothermal system, New Zealand, presents a unique feature in the Taupo Volcanic Zone (TVZ). Drilling intercepted an intrusive complex with a high temperature alteration halo similarly to what is observed in magmatic-derived ore deposits. Thus it presents the perfect opportunity to study the magmatic-hydrothermal transition of the TVZ by characterizing the nature of the deep magmatic fluids link to the heat source of the world known geothermal fields. The record of magmatic-hydrothermal fluid-rock interactions preserved at Ngatamariki may be analogous of processes presently occurring at depth beneath TVZ geothermal systems. The intrusive complex consists of over 5 km3 of tonalite, diorite, basalt and aplitic dykes. Evidence of undercooling subsolidus magmatic textures such as myrmekite and skeletal overgrowth are commonly observed and often linked to volatile loss. The fluids released during the crystallization of the intrusive complex are interpreted to be at the origin of the surrounding high temperature alteration halo. Advanced argillic to potassic alteration and high temperature acidic assemblage is associated with high-temperature quartz veining at depth and vuggy silica at the paleo-surface. Major element compositions of the white micas associated with the high temperature halo show a transition from, muscovite to phengite, muscovitic illite away from the intrusion, with a transition to pyrophyllite and/ or topaz, and andalusite characteristic of more acidic conditions. Abundant high-density (up to 59 wt% NaCl eq and homogenization temperatures of 550 degree Celsius and above) coexist with low-density vapor fluid inclusions. This

  7. Chemical Composition and Antioxidant Activity of Euterpe oleracea Roots and Leaflets

    PubMed Central

    Brunschwig, Christel; Leba, Louis-Jérôme; Saout, Mona; Martial, Karine; Bereau, Didier; Robinson, Jean-Charles

    2016-01-01

    Euterpe oleracea (açaí) is a palm tree well known for the high antioxidant activity of its berries used as dietary supplements. Little is known about the biological activity and the composition of its vegetative organs. The objective of this study was to investigate the antioxidant activity of root and leaflet extracts of Euterpe oleracea (E. oleracea) and characterize their phytochemicals. E. oleracea roots and leaflets extracts were screened in different chemical antioxidant assays (DPPH—2,2-diphenyl-1-picrylhydrazyl, FRAP—ferric feducing antioxidant power, and ORAC—oxygen radical absorbance capacity), in a DNA nicking assay and in a cellular antioxidant activity assay. Their polyphenolic profiles were determined by UV and LC-MS/MS. E. oleracea leaflets had higher antioxidant activity than E. oleracea berries, and leaflets of Oenocarpus bacaba and Oenocarpus bataua, as well as similar antioxidant activity to green tea. E. oleracea leaflet extracts were more complex than root extracts, with fourteen compounds, including caffeoylquinic acids and C-glycosyl derivatives of apigenin and luteolin. In the roots, six caffeoylquinic and caffeoylshikimic acids were identified. Qualitative compositions of E. oleracea, Oenocarpus bacaba and Oenocarpus bataua leaflets were quite similar, whereas the quantitative compositions were quite different. These results provide new prospects for the valorization of roots and leaflets of E. oleracea in the pharmaceutical, food or cosmetic industry, as they are currently by-products of the açaí industry. PMID:28036089

  8. Antioxidant, antimicrobial and urease inhibiting activities of methanolic extracts from Cyphostemma digitatum stem and roots.

    PubMed

    Khan, Rasool; Saif, Abdullah Qasem; Quradha, Mohammed Mansour; Ali, Jawad; Rauf, Abdur; Khan, Ajmal

    2016-01-01

    Cyphostemma digitatum stem and roots extracts were investigated for antioxidant, antimicrobial, urease inhibition potential and phytochemical analysis. Phytochemical screening of the roots and stem extract revealed the presence of secondary metabolites including flavonoids, alkaloids, coumarins, saponins, terpenoids, tannins, carbohydrates/reducing sugars and phenolic compounds. The methanolic extracts of the roots displayed highest antioxidant activity (93.518%) against DPPH while the crude methanolic extract of the stem showed highest antioxidant activity (66.163%) at 100 μg/mL concentration. The methanolic extracts of both stem and roots were moderately active or even found to be less active against the selected bacterial and fungal strains (Tables S2 and S3). The roots extract (methanol) showed significant urease enzyme inhibition activity (IC50 = 41.2 ± 0.66; 0.2 mg/mL) while the stem extract was found moderately active (IC50 = 401.1 ± 0.58; 0.2 mg/mL) against thiourea (IC50 = 21.011; 0.2 mg/mL).

  9. Chemical Composition and Antioxidant Activity of Euterpe oleracea Roots and Leaflets.

    PubMed

    Brunschwig, Christel; Leba, Louis-Jérôme; Saout, Mona; Martial, Karine; Bereau, Didier; Robinson, Jean-Charles

    2016-12-29

    Euterpe oleracea (açaí) is a palm tree well known for the high antioxidant activity of its berries used as dietary supplements. Little is known about the biological activity and the composition of its vegetative organs. The objective of this study was to investigate the antioxidant activity of root and leaflet extracts of Euterpe oleracea (E. oleracea) and characterize their phytochemicals. E. oleracea roots and leaflets extracts were screened in different chemical antioxidant assays (DPPH-2,2-diphenyl-1-picrylhydrazyl, FRAP-ferric feducing antioxidant power, and ORAC-oxygen radical absorbance capacity), in a DNA nicking assay and in a cellular antioxidant activity assay. Their polyphenolic profiles were determined by UV and LC-MS/MS. E. oleracea leaflets had higher antioxidant activity than E. oleracea berries, and leaflets of Oenocarpus bacaba and Oenocarpus bataua, as well as similar antioxidant activity to green tea. E. oleracea leaflet extracts were more complex than root extracts, with fourteen compounds, including caffeoylquinic acids and C-glycosyl derivatives of apigenin and luteolin. In the roots, six caffeoylquinic and caffeoylshikimic acids were identified. Qualitative compositions of E. oleracea, Oenocarpus bacaba and Oenocarpus bataua leaflets were quite similar, whereas the quantitative compositions were quite different. These results provide new prospects for the valorization of roots and leaflets of E. oleracea in the pharmaceutical, food or cosmetic industry, as they are currently by-products of the açaí industry.

  10. Physiological responses of potato (Solanum tuberosum L.) to partial root-zone drying: ABA signalling, leaf gas exchange, and water use efficiency.

    PubMed

    Liu, Fulai; Shahnazari, Ali; Andersen, Mathias N; Jacobsen, Sven-Erik; Jensen, Christian R

    2006-01-01

    The physiological responses of potato (Solanum tuberosum L. cv. Folva) to partial root-zone drying (PRD) were investigated in potted plants in a greenhouse (GH) and in plants grown in the field under an automatic rain-out-shelter. In the GH, irrigation was applied daily to the whole root system (FI), or to one-half of the root system while the other half was dried, for 9 d. In the field, the plants were drip irrigated either to the whole root system near field capacity (FI) or using 70% water of FI to one side of the roots, and shifted to the other side every 5-10 d (PRD). PRD plants had a similar midday leaf water potential to that of FI, whereas in the GH their root water potential (Psi(r)) was significantly lowered after 5 d. Stomatal conductance (g(s)) was more sensitive to PRD than photosynthesis (A) particularly in the field, leading to greater intrinsic water use efficiency (WUE) (i.e. A/g(s)) in PRD than in FI plants on several days. In PRD, the xylem sap abscisic acid concentration ([ABA](xylem)) increased exponentially with decreasing Psi(r); and the relative [ABA](xylem) (PRD/FI) increased exponentially as the fraction of transpirable soil water (FTSW) in the drying side decreased. In the field, the leaf area index was slightly less in PRD than in FI treatment, while tuber biomass was similar for the two treatments. Compared with FI, PRD treatment saved 30% water and increased crop water use efficiency (WUE) by 59%. Restrictions on leaf area expansion and g(s) by PRD-induced ABA signals might have contributed to reduced water use and increased WUE.

  11. [Effects of partial root excision on the growth, photosynthesis, and antioxidant enzyme activities of maize under salt stress].

    PubMed

    Zhang, Hong; Cui, Li-Na; Meng, Jia-Jia; Zhang, Hai-Yan; Shi, De-Yang; Dong, Shu-Ting; Zhang, Ji-Wang; Liu, Peng

    2012-12-01

    A pot experiment was conducted to study the effects of partial root excision on the growth of two maize cultivars (Zhengdan 958 and Denghai 9) throughout their growth period and the photosynthesis and leaf antioxidant enzyme activities at grain-filling stage under salt stress. Four treatments were installed, i. e., control (no salt), low salt (0.2% NaCl), moderate salt (0.4% NaCl), and high salt (0.6% NaCl). Under low salt stress, the grain yield of Zhengdan 958 and Denghai 9 with partial root excision was increased by 13.1% and 31.4%, respectively, as compared with that of the cultivars with no root excision. At jointing stage, the growth of the cultivars with partial root excision was restrained, the root- and shoot dry masses under the same salt stresses being lesser than those of the cultivars with no root excision, but the growth under the conditions of no salt and low salt recovered quickly. At milk-ripe stage and under no salt and low salt conditions, the root- and shoot dry masses, leaf area, total root length, total root surface area, root activity, leaf chlorophyll content, and ear leaf net photosynthetic rate, stomatal conductance, transpiration rate, and CAT and POD activities of the cultivars with partial root excision were significantly larger than those of the cultivars with no root excision, while the shoot diameter and ear leaf MDA content were in adverse. Moderate and high salt stresses had greater effects on the cultivars with partial root excision. The root- and shoot dry masses, root morphology, and photosynthesis indices of the cultivars with partial root excision were smaller than those of the cultivars with no root excision, so did the grain yields. Throughout the growth period of the cultivars, the growth of the cultivars with partial root excision depended on the salt concentration, i. e., was promoted under no and low salt, and inhibited under moderate and high salt conditions.

  12. Effect of percutaneous stimulation at different spinal levels on the activation of sensory and motor roots.

    PubMed

    Roy, François D; Gibson, Grady; Stein, Richard B

    2012-11-01

    Percutaneous spinal stimulation is a promising new technique for understanding human spinal reflexes and for evaluating the pathophysiology of motor roots. Previous studies have generally stimulated the T11/T12 or T12/L1 vertebral junctions, sites that overlie the lumbosacral enlargement. The present study sought to determine the best location for targeting sensory and motor roots during sitting. We used paired stimuli, 50 ms apart, to distinguish the contribution of the reflex and motor components which make up the root evoked potential. This assumed that post-stimulation attenuation, primarily through homosynaptic depression, would abolish the second potential if it was trans-synaptic in origin. Conversely, successive responses would be unchanged if motor roots were being stimulated. Here, we show that sensory root reflexes were optimally elicited with percutaneous stimulation over the L1-L3 vertebrae. However, the optimal position varied between subjects and depended on the target muscle being studied. A collision test showed that the reflex recorded in pre-tibial flexors was low in amplitude and was prone to crosstalk from neighbouring muscles. In contrast to the reflex response, direct motor root activation was optimal with stimulation over the more caudal L5-S1 vertebrae. The present results support the utility of paired stimulation for evaluating the topographical recruitment of sensory and motor roots to human leg muscles.

  13. Structural and functional maturation of active zones in large synapses.

    PubMed

    Cano, Raquel; Torres-Benito, Laura; Tejero, Rocío; Biea, Anca I; Ruiz, Rocío; Betz, William J; Tabares, Lucía

    2013-02-01

    Virtually all functions of the nervous system rely upon synapses, the sites of communication between neurons and between neurons and other cells. Synapses are complex structures, each one comprising hundreds of different types of molecules working in concert. They are organized by adhesive and scaffolding molecules that align presynaptic vesicular release sites, namely, active zones, with postsynaptic neurotransmitter receptors, thereby allowing rapid and reliable intercellular communication. Most synapses are relatively small, and acting alone exerts little effect on their postsynaptic partners. Some, however, are much larger and stronger, reliably driving the postsynaptic cell to its action potential threshold, acting essentially as electrical relays of excitation. These large synapses are among the best understood, and two of these are the subject of this review, namely, the vertebrate neuromuscular junction and the calyx of Held synapse in the mammalian auditory pathway of the brain stem. Both synapses undergo through a complex and well-coordinated maturation process, during which time the molecular elements and the biophysical properties of the secretory machinery are continuously adjusted to the synapse size and to the functional requirements. We here review the morphological and functional changes occurring during postnatal maturation, noting particular similarities and differences between these two large synapses.

  14. Juglone disrupts root plasma membrane H+-ATPase activity and impairs water uptake, root respiration, and growth in soybean (Glycine max) and corn (Zea mays).

    PubMed

    Hejl, Angela M; Koster, Karen L

    2004-02-01

    Juglone is phytotoxic, but the mechanisms of growth inhibition have not been fully explained. Previous studies have proposed that disruption of electron transport functions in mitochondria and chloroplasts contribute to observed growth reduction in species exposed to juglone. In studies reported here, corn and soybean seedlings grown in nutrient solution amended with 10, 50, or 100 microM juglone showed significant decreases in root and shoot dry weights and lengths with increasing concentrations. However, no significant differences in leaf chlorophyll fluorescence or CO2-dependent leaf oxygen evolution were observed, even in seedlings that were visibly affected. Disruption of root oxygen uptake was positively correlated with increasing concentrations of juglone, suggesting that juglone may reach mitochondria in root cells. Water uptake and acid efflux also decreased for corn and soybean seedlings treated with juglone, suggesting that juglone may affect metabolism of root cells by disrupting root plasma membrane function. Therefore, the effect of juglone on H+-ATPase activity in corn and soybean root microsomes was tested. Juglone treatments from 10 to 1000 microM significantly reduced H+-ATPase activity compared to controls. This inhibition of H+-ATPase activity and observed reduction of water uptake offers a logical explanation for previously documented phytotoxicity of juglone. Impairment of this enzyme's activity could affect plant growth in a number of ways because proton-pumping in root cells drives essential plant processes such as solute uptake and, hence, water uptake.

  15. Will changes in root-zone temperature in boreal spring affect recovery of photosynthesis in Picea mariana and Populus tremuloides in a future climate?

    PubMed

    Fréchette, Emmanuelle; Ensminger, Ingo; Bergeron, Yves; Gessler, Arthur; Berninger, Frank

    2011-11-01

    Future climate will alter the soil cover of mosses and snow depths in the boreal forests of eastern Canada. In field manipulation experiments, we assessed the effects of varying moss and snow depths on the physiology of black spruce (Picea -mariana (Mill.) B.S.P.) and trembling aspen (Populus tremuloides Michx.) in the boreal black spruce forest of western Québec. For 1 year, naturally regenerated 10-year-old spruce and aspen were grown with one of the following treatments: additional N fertilization, addition of sphagnum moss cover, removal of mosses, delayed soil thawing through snow and hay addition, or accelerated soil thawing through springtime snow removal. Treatments that involved the addition of insulating moss or snow in the spring caused lower soil temperature, while removing moss and snow in the spring caused elevated soil temperature and thus had a warming effect. Soil warming treatments were associated with greater temperature variability. Additional soil cover, whether moss or snow, increased the rate of photosynthetic recovery in the spring. Moss and snow removal, on the other hand, had the opposite effect and lowered photosynthetic activity, especially in spruce. Maximal electron transport rate (ETR(max)) was, for spruce, 39.5% lower after moss removal than with moss addition, and 16.3% lower with accelerated thawing than with delayed thawing. Impaired photosynthetic recovery in the absence of insulating moss or snow covers was associated with lower foliar N concentrations. Both species were affected in that way, but trembling aspen generally reacted less strongly to all treatments. Our results indicate that a clear negative response of black spruce to changes in root-zone temperature should be anticipated in a future climate. Reduced moss cover and snow depth could adversely affect the photosynthetic capacities of black spruce, while having only minor effects on trembling aspen.

  16. Regulation of nitrogen uptake and assimilation: Effects of nitrogen source, root-zone pH, and aerial CO2 concentration on growth and productivity of soybeans

    NASA Technical Reports Server (NTRS)

    Raper, C. D.; Tolley-Henry, L.

    1989-01-01

    An important feature of controlled-environment crop production systems such as those to be used for life support of crews during space exploration is the efficient utilization of nitrogen supplies. Making decisions about the best sources of these supplies requires research into the relationship between nitrogen source and the physiological processes which regulate vegetative and reproductive plant growth. Work done in four areas within this research objective is reported: (1) experiments on the effects of root-zone pH on preferential utilization of NO3(-) versus NH4(+) nitrogen; (2) investigation of processes at the whole-plant level that regulate nitrogen uptake; (3) studies of the effects of atmospheric CO2 and NO3(-) supply on the growth of soybeans; and (4) examination of the role of NO3(-) uptake in enhancement of root respiration.

  17. Chemical composition, antioxidant and antigenotoxic activities of different fractions of Gentiana asclepiadea L. roots extract

    PubMed Central

    Mihailovic, Vladimir; Matic, Sanja; Mišic, Danijela; Solujic, Slavica; Stanic, Snežana; Katanic, Jelena; Mladenovic, Milan; Stankovic, Nevena

    2013-01-01

    The aim of this study was to evaluate the antioxidant and antigenotoxic activities of chloroform, ethyl acetate and n-butanol fractions obtained from Gentiana asclepiadea L. roots methanolic extract. The main secondary metabolites sweroside, swertiamarin and gentiopicrine were quantified in G. asclepiadea root extracts using HPLC-DAD analysis. Amount of total phenols, flavonoids, flavonols and gallotannins was also determined. The antigenotoxic potential of extracts from roots of G. asclepiadea was assessed using the standard in vivo procedure for the detection of sex linked recessive lethal mutations in Drosophila melanogaster males treated with ethyl methanesulfonate (EMS). The results showed that the most abundant secoiridoid in G. asclepiadea roots was gentiopicrine and its content in the n-butanol fraction (442.89 mg/g) was the highest. Among all extracts, ethyl acetate fraction showed the highest antioxidant activity, as well as total phenolics (146.64 GAE/g), flavonoids (44.62 RUE/g), flavonols (22.71 RUE/g) and gallotannins (0.99 mg GAE/g) content. All the fractions showed antioxidant activity using in vitro model systems and the results have been correlated with total phenolics, flavonoids, flavonols and gallotannins content. In addition to antioxidant activity, G. asclepiadea root extract fractions possess an antigenotoxic effect against DNA damage induced by alkylation with EMS. The antioxidant activity exhibited by G. asclepiadea depended on the phenolic compounds content of the tested extracts, while there was no significant difference in the antigenotoxic potential between fractions. PMID:26622219

  18. COMPARATIVE MICROBIOLOGICAL ACTIVITIES OF ETHANOLIC EXTRACTS OF ROOTS AND AERIAL PARTS OF ACHYRANTHES ASPERA LINN

    PubMed Central

    Kumar, S. Suresh; Perumal, P.; Boopathy, D.; Mukherjee, Pulok K.; Suresh, B.

    2003-01-01

    Ethanolic extract of roots and aerial parts of Achyranthes aspera was investigated for its antibacterial activity against Bacillus subtilis, Bacillus pumilus, and Proteus vulgaris and anti fungal activity against Cryptococcus neoformans, Aspergillus flavus at 100 mg/disc using diffusion method. The comparative studies shown that ethanolic extract of roots and aerial parts of Achyranthes aspera have exhibited moderately equal action when compared to Cotrimoxazole (30 mg/disc) for antibacterial and Clotrimazole (30 mg/disc) for antifungal activity. Our findings confirm the traditional therapeutic claims for this herb. PMID:22557101

  19. Differential TOR activation and cell proliferation in Arabidopsis root and shoot apexes.

    PubMed

    Li, Xiaojuan; Cai, Wenguo; Liu, Yanlin; Li, Hui; Fu, Liwen; Liu, Zengyu; Xu, Lin; Liu, Hongtao; Xu, Tongda; Xiong, Yan

    2017-03-07

    The developmental plasticity of plants relies on the remarkable ability of the meristems to integrate nutrient and energy availability with environmental signals. Meristems in root and shoot apexes share highly similar molecular players but are spatially separated by soil. Whether and how these two meristematic tissues have differential activation requirements for local nutrient, hormone, and environmental cues (e.g., light) remain enigmatic in photosynthetic plants. Here, we report that the activation of root and shoot apexes relies on distinct glucose and light signals. Glucose energy signaling is sufficient to activate target of rapamycin (TOR) kinase in root apexes. In contrast, both the glucose and light signals are required for TOR activation in shoot apexes. Strikingly, exogenously applied auxin is able to replace light to activate TOR in shoot apexes and promote true leaf development. A relatively low concentration of auxin in the shoot and high concentration of auxin in the root might be responsible for this distinctive light requirement in root and shoot apexes, because light is required to promote auxin biosynthesis in the shoot. Furthermore, we reveal that the small GTPase Rho-related protein 2 (ROP2) transduces light-auxin signal to activate TOR by direct interaction, which, in turn, promotes transcription factors E2Fa,b for activating cell cycle genes in shoot apexes. Consistently, constitutively activated ROP2 plants stimulate TOR in the shoot apex and cause true leaf development even without light. Together, our findings establish a pivotal hub role of TOR signaling in integrating different environmental signals to regulate distinct developmental transition and growth in the shoot and root.

  20. Differential TOR activation and cell proliferation in Arabidopsis root and shoot apexes

    PubMed Central

    Li, Xiaojuan; Cai, Wenguo; Liu, Yanlin; Li, Hui; Fu, Liwen; Liu, Zengyu; Liu, Hongtao; Xu, Tongda; Xiong, Yan

    2017-01-01

    The developmental plasticity of plants relies on the remarkable ability of the meristems to integrate nutrient and energy availability with environmental signals. Meristems in root and shoot apexes share highly similar molecular players but are spatially separated by soil. Whether and how these two meristematic tissues have differential activation requirements for local nutrient, hormone, and environmental cues (e.g., light) remain enigmatic in photosynthetic plants. Here, we report that the activation of root and shoot apexes relies on distinct glucose and light signals. Glucose energy signaling is sufficient to activate target of rapamycin (TOR) kinase in root apexes. In contrast, both the glucose and light signals are required for TOR activation in shoot apexes. Strikingly, exogenously applied auxin is able to replace light to activate TOR in shoot apexes and promote true leaf development. A relatively low concentration of auxin in the shoot and high concentration of auxin in the root might be responsible for this distinctive light requirement in root and shoot apexes, because light is required to promote auxin biosynthesis in the shoot. Furthermore, we reveal that the small GTPase Rho-related protein 2 (ROP2) transduces light-auxin signal to activate TOR by direct interaction, which, in turn, promotes transcription factors E2Fa,b for activating cell cycle genes in shoot apexes. Consistently, constitutively activated ROP2 plants stimulate TOR in the shoot apex and cause true leaf development even without light. Together, our findings establish a pivotal hub role of TOR signaling in integrating different environmental signals to regulate distinct developmental transition and growth in the shoot and root. PMID:28223530

  1. Partial root-zone drying and conventional deficit irrigation applied during the whole berry growth maintain yield and berry quality in 'Crimson Seedless' table grapes

    NASA Astrophysics Data System (ADS)

    Pérez-Pastor, Alejandro; Domingo, Rafael; De la Rosa, Jose M.°; Rosario Conesa Saura, M.°

    2016-04-01

    To compare the effects of partial root-zone drying and conventional deficit irrigation applied during post-veraison and the whole berry growth on water relations, yield and berry quality, one experiment was conducted in a commercial vineyard of 'Crimson Seedless' table grapes. Five irrigation treatments were imposed: (i) Control (CTL) irrigated to 110% of crop evapotranspiration (ETc), (ii) regulated deficit irrigation (RDI) irrigated at 50% of CTL during the non- critical period of post-verasion, (iii) continuous deficit irrigation (DIc), irrigated at 50% of CTL throughout the whole berry growing season, (iv) partial root-zone drying (PRD), irrigated similar to RDI, but alternating the irrigation applied in the dry side every 10-14 days; and (v) continuous partial root-zone drying (PRDc), irrigated as DIc but alternating the irrigation in the dry side every 10-14 days. RDI and PRD received 24% and 28% less water than CTL, respectively. These reductions were higher in DIc and PRDc (65% and 53%, respectively). Total yield was not affected by any DI strategy. Only significantly lower values were observed in the weight and height's berries in respect to CTL. However, the colour parameters evaluated increased in all DI treatments, being slightly higher in DIc and PRDc compared with RDI and PRD. In addition, total soluble solids (TSS) were significantly higher in DIc, compared to other irrigated counterparts. Our findings showed that the application of water deficit during the whole berry growth through the use of DIc and PRDc, can be considered for irrigation scheduling in 'Crimson Seedless' table grapes. Acknowledgements This work has been funded by the European Union LIFE+ project IRRIMAN (LIFE13 ENV/ES/000539).

  2. Comparative effects of deficit irrigation and alternate partial root-zone irrigation on xylem pH, ABA and ionic concentrations in tomatoes.

    PubMed

    Wang, Yaosheng; Liu, Fulai; Jensen, Christian Richardt

    2012-03-01

    Comparative effects of partial root-zone irrigation (PRI) and deficit irrigation (DI) on xylem pH, ABA, and ionic concentrations of tomato (Lycopersicon esculentum L.) plants were investigated in two split-root pot experiments. Results showed that PRI plants had similar or significantly higher xylem pH, which was increased by 0.2 units relative to DI plants. Nitrate and total ionic concentrations (cations+anions), and the proportion of cations influenced xylem pH such that xylem pH increases as nitrate and total ionic concentrations decrease, and the proportion of cations increases. In most cases, the xylem ABA concentration was similar for PRI and DI plants, and a clear association between increases in xylem pH with increasing xylem ABA concentration was only found when the soil water content was relatively low. The concentrations of anions, cations, and the sum of anions and cations in PRI were higher than in the DI treatment when soil water content was relatively high in the wetted soil compartment. However, when water content in both soil compartments of the PRI pots were very low before the next irrigation, the acquisition of nutrients by roots was reduced, resulting in lower concentrations of anions and cations in the PRI than in the DI treatment. It is therefore essential that the soil water content in the wet zone should be maintained relatively high while that in the drying soil zone should not be very low, both conditions are crucial to maintain high soil and plant water status while sustaining ABA signalling of the plants.

  3. Effects of long-term irrigation with treated wastewater on the hydraulic properties, and the water and air regime in the root zone of a clayey soil.

    NASA Astrophysics Data System (ADS)

    Assouline, Shmuel

    2013-04-01

    With increasing water scarcity, treated wastewater (TW) appears as an attractive alternative source of water for irrigation, especially in arid and semi-arid regions where freshwater is naturally scarce. However, it seems that long-term use of TW for irrigation of orchards planted on heavy soils cause to yield reduction and crop damages. In terms of water quality, TW are characterized by higher concentrations of sodium and dissolved organic content (DOC) that affect soil exchangeable sodium percentage (ESP) on one hand and soil wettability, on the other hand. The working hypothesis of this study is that long-term use of TW for irrigation of clayey soils causes significant changes in the soil hydraulic properties. Such changes might affect the water and air regime in the root zone, and the hydrological balance components at the field scale. High-resolution field sampling determined the spatial distribution of chloride, ESP and DOC below the dripper, revealing higher salinity and sodicity, lower hydraulic conductivity, and possible preferential flow pattern linked to wettability in WW-irrigated soils. Laboratory experiments involving infiltration, evaporation, and swelling pressure measurements provide quantitative estimates of the impact of TW for irrigation on the soil hydraulic properties. The upper soil layer of TW-irrigated plots is more affected by the impact of DOC on soil wettability, while the lower layers are more affected by the impact of the increased ESP on soil hydraulic conductivity. Continuous monitoring of oxygen concentration at 10, 20 and 30 cm depths in the root zone near the trees and at mid-distance between trees revealed that the air regime in the root zone is significantly affected by the TW use as a consequence for the effect on the water regime.

  4. Shallow Subsurface Soil Moisture Dynamics in the Root-Zone and Bulk Soil of Sparsely Vegetated Land Surfaces as Impacted by Near-Surface Atmospheric State

    NASA Astrophysics Data System (ADS)

    Trautz, A.; Illangasekare, T. H.; Tilton, N.

    2015-12-01

    Soil moisture is a fundamental state variable that provides the water necessary for plant growth and evapotranspiration. Soil moisture has been extensively studied in the context of bare surface soils and root zones. Less attention has focused on the effects of sparse vegetation distributions, such as those typical of agricultural cropland and other natural surface environments, on soil moisture dynamics. The current study explores root zone, bulk soil, and near-surface atmosphere interactions in terms of soil moisture under different distributions of sparse vegetation using multi-scale laboratory experimentation and numerical simulation. This research is driven by the need to advance our fundamental understanding of soil moisture dynamics in the context of improving water conservation and next generation heat and mass transfer numerical models. Experimentation is performed in a two-dimensional 7.3 m long intermediate scale soil tank interfaced with a climate-controlled wind tunnel, both of which are outfitted with current sensor technologies for measuring atmospheric and soil variables. The soil tank is packed so that a sparsely vegetated soil is surrounded by bulk bare soil; the two regions are separated by porous membranes to isolate the root zone from the bulk soil. Results show that in the absence of vegetation, evaporation rates vary along the soil tank in response to longitudinal changes in humidity; soil dries fastest upstream where evaporation rates are highest. In the presence of vegetation, soil moisture in the bulk soil closest to a vegetated region decreases more rapidly than the bulk soil farther away. Evapotranspiration rates in this region are also higher than the bulk soil region. This study is the first step towards the development of more generalized models that account for non-uniformly distributed vegetation and land surfaces exhibiting micro-topology.

  5. Calcium- and potassium-permeable plasma membrane transporters are activated by copper in Arabidopsis root tips: linking copper transport with cytosolic hydroxyl radical production.

    PubMed

    Rodrigo-Moreno, Ana; Andrés-Colás, Nuria; Poschenrieder, Charlotte; Gunsé, Benet; Peñarrubia, Lola; Shabala, Sergey

    2013-04-01

    Transition metals such as copper can interact with ascorbate or hydrogen peroxide to form highly reactive hydroxyl radicals (OH(•) ), with numerous implications to membrane transport activity and cell metabolism. So far, such interaction was described for extracellular (apoplastic) space but not cytosol. Here, a range of advanced electrophysiological and imaging techniques were applied to Arabidopsis thaliana plants differing in their copper-transport activity: Col-0, high-affinity copper transporter COPT1-overexpressing (C1(OE) ) seedlings, and T-DNA COPT1 insertion mutant (copt1). Low Cu concentrations (10 µm) stimulated a dose-dependent Gd(3+) and verapamil sensitive net Ca(2+) influx in the root apex but not in mature zone. C1(OE) also showed a fivefold higher Cu-induced K(+) efflux at the root tip level compared with Col-0, and a reduction in basal peroxide accumulation at the root tip after copper exposure. Copper caused membrane disruptions of the root apex in C1(OE) seedlings but not in copt1 plants; this damage was prevented by pretreatment with Gd(3+) . Our results suggest that copper transport into cytosol in root apex results in hydroxyl radical generation at the cytosolic side, with a consequent regulation of plasma membrane OH(•) -sensitive Ca(2+) and K(+) transport systems.

  6. Structure and seismic activity of the Lesser Antilles subduction zone

    NASA Astrophysics Data System (ADS)

    Evain, M.; Galve, A.; Charvis, P.; Laigle, M.; Ruiz Fernandez, M.; Kopp, H.; Hirn, A.; Flueh, E. R.; Thales Scientific Party

    2011-12-01

    Several active and passive seismic experiments conducted in 2007 in the framework of the European program "Thales Was Right" and of the French ANR program "Subsismanti" provided a unique set of geophysical data highlighting the deep structure of the central part of the Lesser Antilles subduction zone, offshore Dominica and Martinique, and its seismic activity during a period of 8 months. The region is characterized by a relatively low rate of seismicity that is often attributed to the slow (2 cm/yr) subduction of the old, 90 My, Atlantic lithosphere beneath the Caribbean Plate. Based on tomographic inversion of wide-angle seismic data, the forearc can clearly be divided into an inner forearc, characterised by a high vertical velocity gradient in the igneous crust, and an outer forearc with lower crustal velocity gradient. The thick, high velocity, inner forearc is possibly the extension at depth of the Mesozoic Caribbean crust outcropping in La Désirade Island. The outer forearc, up to 70 km wide in the northern part of the study area, is getting narrower to the south and disappears offshore Martinique. Based on its seismic velocity structure with velocities higher than 6 km/s the backstop consists, at least partly, of magmatic rocks. The outer forearc is also highly deformed and faulted within the subducting trend of the Tiburon Ridge. With respect to the inner forearc velocity structure the outer forearc basement could either correspond to an accreted oceanic terrane or made of highly fractured rocks. The inner forearc is a dense, poorly deformable crustal block, tilted southward as a whole. It acts as a rigid buttress increasing the strain within both the overriding and subducting plates. This appears clearly in the current local seismicity affecting the subducting and the overriding plates that is located beneath the inner forearc. We detected earthquakes beneath the Caribbean forearc and in the Atlantic oceanic plate as well. The main seismic activity is

  7. Genotypical Differences in Aluminum Resistance of Maize Are Expressed in the Distal Part of the Transition Zone. Is Reduced Basipetal Auxin Flow Involved in Inhibition of Root Elongation by Aluminum?1

    PubMed Central

    Kollmeier, Malte; Felle, Hubert H.; Horst, Walter J.

    2000-01-01

    Short-term Al treatment (90 μm Al at pH 4.5 for 1 h) of the distal transition zone (DTZ; 1–2 mm from the root tip), which does not contribute significantly to root elongation, inhibited root elongation in the main elongation zone (EZ; 2.5–5 mm from the root tip) to the same extent as treatment of the entire maize (Zea mays) root apex. Application of Al to the EZ had no effect on root elongation. Higher genotypical resistance to Al applied to the entire root apex, and specifically to the DTZ, was expressed by less inhibition of root elongation, Al accumulation, and Al-induced callose formation, primarily in the DTZ. A characteristic pH profile along the surface of the root apex with a maximum of pH 5.3 in the DTZ was demonstrated. Al application induced a substantial flattening of the pH profile moreso in the Al-sensitive than in the Al-resistant cultivar. Application of indole-3-acetic acid to the EZ but not to the meristematic zone significantly alleviated the inhibition of root elongation induced by the application of Al to the DTZ. Basipetal transport of exogenously applied [3H]indole-3-acetic acid to the meristematic zone was significantly inhibited by Al application to the DTZ in the Al-sensitive maize cv Lixis. Our results provide evidence that the primary mechanisms of genotypical differences in Al resistance are located within the DTZ, and suggest a signaling pathway in the root apex mediating the Al signal between the DTZ and the EZ through basipetal auxin transport. PMID:10712559

  8. Prone to fix: Resilience of the active nitrogen-fixing rice root microbiome

    NASA Astrophysics Data System (ADS)

    Hurek, Thomas; Sabale, Mugdha; Sarkar, Abhijit; Pees, Tobias; Reinhold-Hurek, Barbara

    2016-04-01

    Due to water consumption, many lowland rice areas in Asia are undergoing a transition that involves adoption of new management strategies, with crop rotations encompassing a non-flooded crop, including maize. Shifting from flooded to non-flooded cropping is likely to affect microbial nitrogen cycling. For analysis of the root-associated microbiome of rice and maize in response to flooding or nitrogen fertilizer, we combine methods of microbial ecology (Next-Generation sequencing of amplicons), and a reductionist approach with pure cultures of the endophytic diazotroph Azoarus sp.. Field plots of the ICON project (Introducing non-flooded crops in rice-dominated landscapes: Impact on Carbon, nitrogen and water budgets) at the International Rice Research Institute in the Philippines were analyzed. Root-associated activity of nitrogenase gene expression was assessed by quantitative RT-PCR of nifH. For rice, expression levels were surprisingly stable, in response to non-flooded versus flooded conditions, or in response to conventional nitrogen fertilizer applications versus lack of N-fertilizer. In contrast, the active diazotrophic population of maize roots was not resistant to N-fertilization, nifH expression strongly decreased. Concordant changes in the diazotrophic resident or active communities were detected by nifH amplicon sequence analysis, based on bacterial DNA or mRNA, respectively. For high-resolution analyses of the endobiome in gnotobiotic culture, we developed a dual fluorescence reporter system for Azoarcus sp. BH72 which allows to quantify and visualize epi- and endophytic gene expression by concfocal microscopy (CLSM). This allowed us to demonstrate sites of active nitrogen fixation (gene expression) in association with rice roots. We confirmed that at low nitrogen fertilizer levels, endophytic nifH gene expression persisted in rice roots, while it was repressed in maize roots. This supports our observation of remarkable stability of nitrogen fixation

  9. [Biochemical changes in the brain of the root vole (Microtus oeconomus) from a 30-kilometer zone around the Chernobyl Atomic Electric Power Station].

    PubMed

    Kudiasheva, A G; Zagorskaia, N G; Shevchenko, O G

    1996-01-01

    Deviations in lipid peroxidation parameters and in activity of dehydration enzymes in the brain of the tundra voles inhabiting areas with higher level of technogenic contamination (the 30-km zone of the Chernobyl NPP and the Republic of Komi) have been analyzed. During the first years after the disaster a decrease in the lipid antioxidative status of the brain and dehydrogenase activity, changes in the lipid composition of voles trapped in the disaster zone in comparison with control ones were more significant. Relative stabilization of the phospholipid composition with low antioxidizing activity of lipids and slight activity of succinate and piruvate dehydrogenases has been observed in a distant period of analysis.

  10. Influence of Roasting Treatment on the Antioxidant Activities and Color of Burdock Root Tea

    PubMed Central

    Lee, Darye; Kim, Choon Young

    2017-01-01

    The major trend in the antioxidant market is the growing consumer demand for natural antioxidants. Tea, one of the most widely consumed beverages in the world, is an easy way to obtain antioxidant components from a natural source. Our objective was to develop burdock root tea (BRT) with potent antioxidant activity and good color quality. In order to obtain maximum antioxidant activity and quality, the effect of roasting was determined. The antioxidant capacities and total phenolic contents of BRT increased as roasting increased. The color of BRT became darker with increased roasting, extraction time, and amount of burdock roots. Color of BRT was also positively correlated with total antioxidant capacity. Roasting significantly enhanced the total antioxidant activities and color quality of BRT. These results suggest that roasting BRT increases beneficial antioxidant components from burdock roots.

  11. Key role of Upper Mantle rocks in Alpine type orogens: some speculations derived from extensional settings for subduction zone processes and mountain roots

    NASA Astrophysics Data System (ADS)

    Müntener, Othmar

    2016-04-01

    Orogenic architecture and mountain roots are intrinsically related. Understanding mountain roots largely depends on geophysical methods and exhumed high pressure and high temperature rocks that might record snapshots of the temporal evolution at elevated pressure, temperatures and/or fluid pulses. If such high pressure rocks represent ophiolitic material they are commonly interpreted as exhumed remnants of some sort of 'mid-ocean ridge' processes. Mantle peridotites and their serpentinized counterparts thus play a key role in understanding orogenic architecture as they are often considered to track suture zones or ancient plate boundaries. The recognition that some mantle peridotites and their serpentinized counterparts are derived from ocean-continent transition zones (OCT's) or non-steady state (ultra-)slow plate separation systems question a series of 'common beliefs' that have been applied to understand Alpine-type collisional orogens in the framework of the ophiolite concept. Among these are: (i) the commonly held assumption of a simple genetic link between mantle melting and mafic (MORB-type) magmatism, (ii) the commonly held assumption that mélange zones represent deep subduction zone processes at the plate interface, (iii) that pre-collisional continental crust and oceanic crust can easily be reconstructed to their original thickness and used for reconstructions of the size of small subducted oceanic basins as geophysical data from rifted margins increasingly indicate that continental crust is thinned to much less than the average 30-35 kilometers over a large area that might be called the 'zone of hyperextension', and (iv) the lack of a continuous sheet of mafic oceanic crust and the extremely short time interval of formation results in a lack of 'eclogitization potential' during convergence and hence a lack of potential for subsequent slab pull and, perhaps, a lack of potential for 'slab-breakoff'. Here we provide a synopsis of mantle rocks from the

  12. Investigation of the Fusarium virguliforme Transcriptomes Induced during Infection of Soybean Roots Suggests that Enzymes with Hydrolytic Activities Could Play a Major Role in Root Necrosis

    PubMed Central

    Sahu, Binod B.; Baumbach, Jordan L.; Singh, Prashant; Srivastava, Subodh K.; Yi, Xiaoping

    2017-01-01

    Sudden death syndrome (SDS) is caused by the fungal pathogen, Fusarium virguliforme, and is a major threat to soybean production in North America. There are two major components of this disease: (i) root necrosis and (ii) foliar SDS. Root symptoms consist of root necrosis with vascular discoloration. Foliar SDS is characterized by interveinal chlorosis and leaf necrosis, and in severe cases by flower and pod abscission. A major toxin involved in initiating foliar SDS has been identified. Nothing is known about how root necrosis develops. In order to unravel the mechanisms used by the pathogen to cause root necrosis, the transcriptome of the pathogen in infected soybean root tissues of a susceptible cultivar, ‘Essex’, was investigated. The transcriptomes of the germinating conidia and mycelia were also examined. Of the 14,845 predicted F. virguliforme genes, we observed that 12,017 (81%) were expressed in germinating conidia and 12,208 (82%) in mycelia and 10,626 (72%) in infected soybean roots. Of the 10,626 genes induced in infected roots, 224 were transcribed only following infection. Expression of several infection-induced genes encoding enzymes with oxidation-reduction properties suggests that degradation of antimicrobial compounds such as the phytoalexin, glyceollin, could be important in early stages of the root tissue infection. Enzymes with hydrolytic and catalytic activities could play an important role in establishing the necrotrophic phase. The expression of a large number of genes encoding enzymes with catalytic and hydrolytic activities during the late infection stages suggests that cell wall degradation could be involved in root necrosis and the establishment of the necrotrophic phase in this pathogen. PMID:28095498

  13. An updated model for nitrate uptake modelling in plants. II. Assessment of active root involvement in nitrate uptake based on integrated root system age: measured versus modelled outputs

    PubMed Central

    Malagoli, Philippe; Le Deunff, Erwan

    2014-01-01

    Background and Aims An updated version of a mechanistic structural–functional model was developed to predict nitrogen (N) uptake throughout the growth cycle by a crop of winter oilseed rape, Brassica napus, grown under field conditions. Methods The functional component of the model derives from a revisited conceptual framework that combines the thermodynamic Flow–Force interpretation of nitrate uptake isotherms and environmental and in planta effects on nitrate influx. Estimation of the root biomass (structural component) is based upon a combination of root mapping along the soil depth profile in the field and a relationship between the specific root length and external nitrate concentration. The root biomass contributing actively to N uptake was determined by introduction of an integrated root system age that allows assignment of a root absorption capacity at a specific age of the root. Key Results Simulations were well matched to measured data of N taken up under field conditions for three levels of N fertilization. The model outputs indicated that the two topsoil layers (0–30 and 30–60 cm) contained 75–88 % of the total root length and biomass, and accounted for 90–95 % of N taken up at harvest. Conclusions This conceptual framework provides a model of nitrate uptake that is able to respond to external nitrate fluctuations at both functional and structural levels. PMID:24709791

  14. ANTIBACTERIAL ACTIVITY OF ROOT EXTRACT OF TRIANTHEMA DECANDRA

    PubMed Central

    Jaswanth, A.; Jagannathan, K.; Heisonrobert, S. Jerry; Loganathan, V.; Manimaran, S.; Ruckmani, K.

    2002-01-01

    Methanolic extract of Trianthema decandra was investigated for its antibacterial activity against staphylococcus aureus (NCIM 2079), Escherichia coli (NCIM 2065), Bacillus subtilis (NCIM 2063), Pseudomonas aeruginosa (NICIM 2036) and Proteus vulgaris (NICIM 2027) at 100 μg/disc using disc diffusion method. The extract showed significant antibacterial activity and were comparable to Chloramphenicol (30/ μg/disc). Our findings confirm the traditional therapeutic claims for this herb. PMID:22557045

  15. 77 FR 55182 - Foreign-Trade Zone 45-Portland, OR, Authorization of Production Activity, Shimadzu USA...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-07

    ... Foreign-Trade Zones Board Foreign-Trade Zone 45--Portland, OR, Authorization of Production Activity... Production), Canby, OR The Port of Portland, grantee of FTZ 45, submitted a notification of proposed production activity within Subzone 45G, at the facility of Shimadzu USA Manufacturing, Inc....

  16. 78 FR 13857 - Foreign-Trade Zone 84-Houston, TX; Notification of Proposed Production Activity; Toshiba...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-01

    ... Foreign-Trade Zones Board Foreign-Trade Zone 84--Houston, TX; Notification of Proposed Production Activity; Toshiba International Corporation (Hybrid Electric Vehicle Motors and Generators Production) The Port of Houston Authority, grantee of FTZ 84, submitted a notification of proposed production activity on...

  17. Root gravitropism and root hair development constitute coupled developmental responses regulated by auxin homeostasis in the Arabidopsis root apex.

    PubMed

    Rigas, Stamatis; Ditengou, Franck Anicet; Ljung, Karin; Daras, Gerasimos; Tietz, Olaf; Palme, Klaus; Hatzopoulos, Polydefkis

    2013-03-01

    Active polar transport establishes directional auxin flow and the generation of local auxin gradients implicated in plant responses and development. Auxin modulates gravitropism at the root tip and root hair morphogenesis at the differentiation zone. Genetic and biochemical analyses provide evidence for defective basipetal auxin transport in trh1 roots. The trh1, pin2, axr2 and aux1 mutants, and transgenic plants overexpressing PIN1, all showing impaired gravity response and root hair development, revealed ectopic PIN1 localization. The auxin antagonist hypaphorine blocked root hair elongation and caused moderate agravitropic root growth, also leading to PIN1 mislocalization. These results suggest that auxin imbalance leads to proximal and distal developmental defects in Arabidopsis root apex, associated with agravitropic root growth and root hair phenotype, respectively, providing evidence that these two auxin-regulated processes are coupled. Cell-specific subcellular localization of TRH1-YFP in stele and epidermis supports TRH1 engagement in auxin transport, and hence impaired function in trh1 causes dual defects of auxin imbalance. The interplay between intrinsic cues determining root epidermal cell fate through the TTG/GL2 pathway and environmental cues including abiotic stresses modulates root hair morphogenesis. As a consequence of auxin imbalance in Arabidopsis root apex, ectopic PIN1 mislocalization could be a risk aversion mechanism to trigger root developmental responses ensuring root growth plasticity.

  18. Nitrification inhibition activity, a novel trait in root exudates of rice

    PubMed Central

    Pariasca Tanaka, Juan; Nardi, Pierfrancesco; Wissuwa, Matthias

    2010-01-01

    Background and aims Nitrification is an important process in soil--plant systems for providing plant-available nitrate (NO3−). However, NO3− is less stable in soils compared with ammonium (NH4+) and is more easily lost through leaching, runoff or denitrification. This study tested whether biological nitrification inhibition (BNI) activity is present in the root exudates of rice (Oryza sativa) and also the extent of variation between different genotypes. Methodology The BNI activity of root exudates was estimated by a bioluminescence assay using a recombinant Nitrosomonas europaea strain. Afterwards, the effect of a single application of concentrated root exudates and that of exudates deposited in the rhizosphere soil was tested on BNI using soil incubation. Soil was added with (NH4)2SO4 and water to reach 60 % of the water-holding capacity and incubated at 30 °C for different periods. Amounts of NH4+ and NO3− were determined using a continuous-flow auto-analyser. Principal results In an initial screening experiment, BNI activity in the exudates of 36 different rice genotypes was evaluated using a bioassay based on a recombinant Nitrosomonas strain. Significant genotypic variation was detected with the upland cultivar IAC25 demonstrating consistently high BNI activity, while modern lowland varieties like Nipponbare or IR64 exhibited lower activity. Subsequent experiments ruled out the possibility that BNI activity is simply due to non-specific (solute) leakage from roots. Soil incubation studies with concentrated root exudates of IAC25 showed significant reductions in NO3− formation. This effect was confirmed by detecting lower NO3− levels in incubation experiments using rhizosphere soil obtained from IAC25. Conclusions Our results provide first evidence that root exudates of rice can reduce nitrification rates in soil. Having shown this for a model crop, rice, offers possibilities for further exploitation of this phenomenon through molecular and genetic

  19. Pb-inhibited mitotic activity in onion roots involves DNA damage and disruption of oxidative metabolism.

    PubMed

    Kaur, Gurpreet; Singh, Harminder Pal; Batish, Daizy Rani; Kohli, Ravinder Kumar

    2014-09-01

    Plant responses to abiotic stress significantly affect the development of cells, tissues and organs. However, no studies correlating Pb-induced mitotic inhibition and DNA damage and the alterations in redox homeostasis during root division per se were found in the literature. Therefore, an experiment was conducted to evaluate the impact of Pb on mitotic activity and the associated changes in the oxidative metabolism in onion roots. The cytotoxic effect of Pb on cell division was assessed in the root meristems of Allium cepa (onion). The mitotic index (MI) was calculated and chromosomal abnormalities were sought. Pb-treatment induced a dose-dependent decrease in MI in the onion root tips and caused mitotic abnormalities such as distorted metaphase, fragments, sticky chromosomes, laggards, vagrant chromosomes and bridges. Single Cell Gel Electrophoresis was also performed to evaluate Pb induced genotoxicity. It was accompanied by altered oxidative metabolism in the onion root tips suggesting the interference of Pb with the redox homeostasis during cell division. There was a higher accumulation of malondialdehyde, conjugated dienes and hydrogen peroxide, and a significant increase in the activities of superoxide dismutases, ascorbate peroxidases, guaiacol peroxidases and glutathione reductases in Pb-treated onion roots, whereas catalases activity exhibited a decreasing pattern upon Pb exposure. The study concludes that Pb-induced cytotoxicity and genotoxicity in the onion roots is mediated through ROS and is also tightly linked to the cell cycle. The exposure to higher concentrations arrested cell cycle leading to cell death, whereas different repair responses are generated at lower concentrations, thereby allowing the cell to complete the cell cycle.

  20. Structure and activity of bacterial community inhabiting rice roots and the rhizosphere.

    PubMed

    Lu, Yahai; Rosencrantz, Dirk; Liesack, Werner; Conrad, Ralf

    2006-08-01

    Root-derived carbon provides a major source for microbial production and emission of CH4 from rice field soils. Therefore, we characterized the structure and activity of the bacterial community inhabiting rice roots and the rhizosphere. In the first experiment, DNA retrieved from rice roots was analysed for bacterial 16S rRNA genes using cloning, sequencing and in situ hybridization. In the second experiment, rice plants were pulse-labelled with 13CO2 (99% of atom 13C) for 7 days, and the bacterial RNA was isolated from rhizosphere soil and subjected to density gradient centrifugation. RNA samples from density fractions were analysed by terminal restriction fragment length polymorphism fingerprinting, cloning and sequencing. The experiments showed that the dominant bacteria inhabiting rice roots and the rhizosphere particularly belonged to the Alphaproteobacteria, Betaproteobacteria and Firmicutes. The RNA stable isotope probing revealed that the bacteria actively assimilating C derived from the pulse-labelled rice plants were Azospirillum spp. (Alphaproteobacteria) and members of Burkholderiaceae (Betaproteobacteria). Both anaerobic (e.g. Clostridia) and aerobic (e.g. Comamonas) degraders were present at high abundance, indicating that root environments and degradation processes were highly heterogeneous. The relative importance of iron and sulfate reducers suggested that cycling of iron and sulfur is active in the rhizosphere.

  1. Activation of geminivirus V-sense promoters in roots is restricted to nematode feeding sites.

    PubMed

    Escobar, Carolina; García, Alejandra; Aristizábal, Fabio; Portillo, Mary; Herreros, Esther; Munoz-Martín, M Angeles; Grundler, Florian; Mullineaux, Phillip M; Fenoll, Carmen

    2010-05-01

    Obligate sedentary endoparasitic nematodes, such as the root-knot and cyst nematodes, elicit the differentiation of specialized nematode nurse or feeding cells [nematode feeding sites (NFS), giant cells and syncytia, respectively]. During NFS differentiation, marked changes in cell cycle progression occur, partly similar to those induced by some geminiviruses. In this work, we describe the activation of V-sense promoters from the Maize streak virus (MSV) and Wheat dwarf virus (WDV) in NFS formed by root-knot and cyst nematodes. Both promoters were transiently active in microinjection experiments. In tobacco and Arabidopsis transgenic lines carrying promoter-beta-glucuronidase fusions, the MSV V-sense promoter was activated in the vascular tissues of aerial plant parts, primarily leaf and cotyledon phloem tissue and some floral structures. Interestingly, in roots, promoter activation was restricted to syncytia and giant cells tested with four different nematode populations, but undetectable in the rest of the root system. As the activity of the promoter in transgenic rootstocks should be restricted to NFS only, the MSV promoter may have utility in engineering grafted crops for nematode control. Therefore, this study represents a step in the provision of some of the much needed additional data on promoters with restricted activation in NFS useful in biotechnological nematode control strategies.

  2. Antioxidant and Nephroprotective Activities of Aconitum heterophyllum Root in Glycerol Induced Acute Renal Failure in Rats

    PubMed Central

    Eerike, Madhavi; Raghuraman, Lakshmipathy Prabhu; Rajamanickam, Maignana Kumar

    2016-01-01

    Aim The present study was to evaluate the antioxidant and nephroprotective activities of ethanolic extract of Aconitum heterophyllum root (EEAHR) in glycerol induced acute renal failure (ARF) in Wistar albino rats. Materials and Methods In vitro antioxidant activity of EEAHR was assessed using the 2, 2-diphenyl-picrylhydrazyl (DPPH assay), nitric oxide radical scavenging (NO assay), hydrogen peroxide (H2O2 assay) and ferric reducing antioxidant power (FRAP) scavenging activity assays. In vivo study, rats were divided into four groups of six each for assessing the nephroprotective activity. Group-1 received normal saline, group-2 received 50% glycerol (10 ml/kg) alone, group-3 received glycerol and 250 mg/kg of EEAHR and group-4 received glycerol and 500 mg/kg of EEAHR. The renal injury and recovery was measured by serum creatinine, blood urea nitrogen (BUN), total proteins, albumin, urine output and histopathological changes. Results In vitro antioxidant activity of root extract was found to be equal to Vitamin C and in an in vivo study root extract treated animals showed significant attenuation of biochemical parameters and histopathological changes of the kidney compared to glycerol treated group and it was found to be more significant with the extract at 500 mg/kg than 250mg/kg. Conclusion The present study revealed that Aconitum heterophyllum root has shown antioxidant and nephroprotective activities. PMID:27134892

  3. Unc-51 controls active zone density and protein composition by downregulating ERK signaling.

    PubMed

    Wairkar, Yogesh P; Toda, Hirofumi; Mochizuki, Hiroaki; Furukubo-Tokunaga, Katsuo; Tomoda, Toshifumi; Diantonio, Aaron

    2009-01-14

    Efficient synaptic transmission requires the apposition of neurotransmitter release sites opposite clusters of postsynaptic neurotransmitter receptors. Transmitter is released at active zones, which are composed of a large complex of proteins necessary for synaptic development and function. Many active zone proteins have been identified, but little is known of the mechanisms that ensure that each active zone receives the proper complement of proteins. Here we use a genetic analysis in Drosophila to demonstrate that the serine threonine kinase Unc-51 acts in the presynaptic motoneuron to regulate the localization of the active zone protein Bruchpilot opposite to glutamate receptors at each synapse. In the absence of Unc-51, many glutamate receptor clusters are unapposed to Bruchpilot, and ultrastructural analysis demonstrates that fewer active zones contain dense body T-bars. In addition to the presence of these aberrant synapses, there is also a decrease in the density of all synapses. This decrease in synaptic density and abnormal active zone composition is associated with impaired evoked transmitter release. Mechanistically, Unc-51 inhibits the activity of the MAP kinase ERK to promote synaptic development. In the unc-51 mutant, increased ERK activity leads to the decrease in synaptic density and the absence of Bruchpilot from many synapses. Hence, activated ERK negatively regulates synapse formation, resulting in either the absence of active zones or the formation of active zones without their proper complement of proteins. The Unc-51-dependent inhibition of ERK activity provides a potential mechanism for synapse-specific control of active zone protein composition and release probability.

  4. Mitogen-activated protein kinase 6 controls root growth in Arabidopsis by modulating Ca2+ -based Na+ flux in root cell under salt stress.

    PubMed

    Han, Shuan; Wang, Chi-wen; Wang, Wen-le; Jiang, Jing

    2014-03-01

    Little is known about the role of mitogen-activated protein kinase 6 (MPK6) in Na(+) toxicity and inhibition of root growth in Arabidopsis under NaCl stress. In this study, we found that root elongation in seedlings of the loss-of-function mutants mpk6-2 and mpk6-3 was less sensitive to NaCl or Na-glutamate, but not to KCl or mannitol, as compared with that of wild-type (WT) seedlings. The less sensitive characteristic was eliminated by adding the Ca(2+) chelator EGTA or the Ca(2+) channel inhibitor LaCl3, but not the Ca(2+) ionophore A23187. This suggested that the tolerance of mpk6 to Na(+) toxicity was Ca(2+)-dependent. We measured plasma membrane (PM) Na(+)-conducted currents (NCCs) in root cells. Increased concentrations of NaCl increased the inward NCCs while decreased the outward NCCs in WT root cells, attended by a positive shift in membrane potential. In mpk6 root cells, NaCl significantly increased outward but not inward NCCs, accompanied by a negative shift in membrane potential. That is, mpk6 decreased NaCl-induced the Na(+) accumulation by modifying PM Na(+) flux in root cells. Observations of aequorin luminescence revealed a NaCl-induced increase of cytosolic Ca(2+) in mpk6 root cells, resulting from PM Ca(2+) influx. An increase of cytosolic Ca(2+) was required to alleviate the NaCl-increased Na(+) content and Na(+)/K(+) ratio in mpk6 roots. Together, these results show that mpk6 accumulated less Na(+) in response to NaCl because of the increased cytosolic Ca(2+) level in root cells; thus, its root elongation was less inhibited than that of WT by NaCl.

  5. Identification and quantification of the main active anticancer alkaloids from the root of Glaucium flavum.

    PubMed

    Bournine, Lamine; Bensalem, Sihem; Wauters, Jean-Noël; Iguer-Ouada, Mokrane; Maiza-Benabdesselam, Fadila; Bedjou, Fatiha; Castronovo, Vincent; Bellahcène, Akeila; Tits, Monique; Frédérich, Michel

    2013-12-02

    Glaucium flavum is used in Algerian folk medicine to remove warts (benign tumors). Its local appellations are Cheqiq el-asfar and Qarn el-djedyane. We have recently reported the anti-tumoral activity of Glaucium flavum root alkaloid extract against human cancer cells, in vitro and in vivo. The principal identified alkaloid in the extract was protopine. This study aims to determine which component(s) of Glaucium flavum root extract might possess potent antitumor activity on human cancer cells. Quantitative estimation of Glaucium flavum alkaloids was realized by HPLC-DAD. Glaucium flavum effect on human normal and cancer cell viability was determined using WST-1 assay. Quantification of alkaloids in Glaucium flavum revealed that the dried root part contained 0.84% of protopine and 0.07% of bocconoline (w/w), while the dried aerial part contained only 0.08% of protopine, glaucine as the main alkaloid, and no bocconoline. In vitro evaluation of the growth inhibitory activity on breast cancer and normal cells demonstrated that purified protopine did not reproduce the full cytotoxic activity of the alkaloid root extract on cancer cell lines. On the other hand, bocconoline inhibited strongly the viability of cancer cells with an IC50 of 7.8 µM and only a low cytotoxic effect was observed against normal human cells. Our results showed for the first time that protopine is the major root alkaloid of Glaucium flavum. Finally, we are the first to demonstrate a specific anticancer effect of Glaucium flavum root extract against breast cancer cells, which can be attributed, at least in part, to bocconoline.

  6. Antioxidative and in vitro antiproliferative activity of Arctium lappa root extracts

    PubMed Central

    2011-01-01

    Background Arctium lappa, known as burdock, is widely used in popular medicine for hypertension, gout, hepatitis and other inflammatory disorders. Pharmacological studies indicated that burdock roots have hepatoprotective, anti-inflammatory, free radical scavenging and antiproliferative activities. The aim of this study was to evaluate total phenolic content, radical scavenging activity by DPPH and in vitro antiproliferative activity of different A. lappa root extracts. Methods Hot and room temperature dichloromethanic, ethanolic and aqueous extracts; hydroethanolic and total aqueous extract of A. lappa roots were investigated regarding radical scavenging activity by DPPH, total phenolic content by Folin-Ciocalteau method and antiproliferative in vitro activity was evaluated in human cancer cell lines. The hydroethanolic extract analyzed by high-resolution electrospray ionization mass spectroscopy. Results Higher radical scavenging activity was found for the hydroethanolic extract. The higher phenolic contents were found for the dichloromethane, obtained both by Soxhlet and maceration extraction and hydroethanolic extracts. The HRESI-MS demonstrated the presence of arctigenin, quercetin, chlorogenic acid and caffeic acid compounds, which were identified by comparison with previous data. The dichloromethane extracts were the only extracts that exhibited activity against cancer cell lines, especially for K562, MCF-7 and 786-0 cell lines. Conclusions The hydroethanolic extracts exhibited the strongest free radical scavenging activity, while the highest phenolic content was observed in Soxhlet extraction. Moreover, the dichloromethanic extracts showed selective antiproliferative activity against K562, MCF-7 and 786-0 human cancer cell lines. PMID:21429215

  7. Chemical characterization and prebiotic activity of fructo-oligosaccharides from Stevia rebaudiana (Bertoni) roots and in vitro adventitious root cultures.

    PubMed

    Sanches Lopes, Sheila Mara; Francisco, Mariane Grigio; Higashi, Bruna; de Almeida, Rafaela Takako Ribeiro; Krausová, Gabriela; Pilau, Eduardo Jorge; Gonçalves, José Eduardo; Gonçalves, Regina Aparecida Correia; Oliveira, Arildo José Braz de

    2016-11-05

    Stevia rebaudiana (Bertoni) is widely studied because of its foliar steviol glycosides. Fructan-type polysaccharides were recently isolated from its roots. Fructans are reserve carbohydrates that have important positive health effects and technological applications in the food industry. The objective of the present study was to isolate and characterize fructo-oligosaccharides (FOSs) from S. rebaudiana roots and in vitro adventitious root cultures and evaluate the potential prebiotic effect of these molecules. The in vitro adventitious root cultures were obtained using a roller bottle system. Chemical analyses (gas chromatography-mass spectrometry, (1)H nuclear magnetic resonance, and off-line electrospray ionization-mass spectrometry) revealed similar chemical properties of FOSs that were obtained from the different sources. The potential prebiotic effects of FOSs that were isolated from S. rebaudiana roots enhanced the growth of both bifidobacteria and lactobacilli, with strains specificity in their fermentation ability.

  8. Comparative phytohormone profiles, lipid kinase and lipid phosphatase activities in barley aleurone, coleoptile, and root tissues.

    PubMed

    Meringer, Maria V; Villasuso, Ana L; Pasquaré, Susana J; Giusto, Norma M; Machado, Estela E; Racagni, Graciela E

    2012-09-01

    We analyzed lipid kinase and lipid phosphatase activities and determined endogenous phytohormone levels by liquid chromatography-tandem mass spectrometry in root and coleoptile tissues following germination of barley (Hordeum vulgare) seeds. The enzymes showing highest activity in aleurone cells were diacylglycerol kinase (DAG-k, EC 2.7.1.107) and phosphatidate kinase (PA-k). The ratio of gibberellins (GAs) to abscisic acid (ABA) was 2-fold higher in aleurone than in coleoptile or root tissues. In coleoptiles, phosphatidylinositol 4-kinase (PI4-k, EC 2.7.1.67) showed the highest enzyme activity, and jasmonic acid (JA) level was higher than in aleurone. In roots, activities of PI4-k, DAG-k, and PA-k were similar, and salicylic acid (SA) showed the highest concentration. In the assays to evaluate the hydrolysis of DGPP (diacylglycerol pyrophosphate) and PA (phosphatidic acid) we observed that PA hydrolysis by LPPs (lipid phosphate phosphatases) was not modified; however, the diacylglycerol pyrophosphate phosphatase (DGPPase) was strikingly higher in coleoptile and root tissues than to aleurone. Relevance of these findings in terms of signaling responses and seedling growth is discussed.

  9. The SHORT-ROOT-like gene PtSHR2B is involved in Populus phellogen activity.

    PubMed

    Miguel, Andreia; Milhinhos, Ana; Novák, Ondřej; Jones, Brian; Miguel, Célia M

    2016-03-01

    SHORT-ROOT (SHR) is a GRAS transcription factor first characterized for its role in the specification of the stem cell niche and radial patterning in Arabidopsis thaliana (At) roots. Three SHR-like genes have been identified in Populus trichocarpa (Pt). PtSHR1 shares high similarity with AtSHR over the entire length of the coding sequence. The two other Populus SHR-like genes, PtSHR2A and PtSHR2B, are shorter in their 5' ends when compared with AtSHR. Unlike PtSHR1, that is expressed throughout the cambial zone of greenhouse-grown Populus trees, PtSHR2Bprom:uidA expression was detected in the phellogen. Additionally, PtSHR1 and PtSHR2B expression patterns markedly differ in the shoot apex and roots of in vitro plants. Transgenic hybrid aspen expressing PtSHR2B under the 35S constitutive promoter showed overall reduced tree growth while the proportion of bark increased relative to the wood. Reverse transcription-quantitative PCR (RT-qPCR) revealed increased transcript levels of cytokinin metabolism and response-related genes in the transgenic plants consistent with an increase of total cytokinin levels. This was confirmed by cytokinin quantification by LC-MS/MS. Our results indicate that PtSHR2B appears to function in the phellogen and therefore in the regulation of phellem and periderm formation, possibly acting through modulation of cytokinin homeostasis. Furthermore, this work points to a functional diversification of SHR after the divergence of the Populus and Arabidopsis lineages. This finding may contribute to selection and breeding strategies of cork oak in which, unlike Populus, the phellogen is active throughout the entire tree lifespan, being at the basis of a highly profitable cork industry.

  10. The effects of exogenous hormones on rooting process and the activities of key enzymes of Malus hupehensis stem cuttings.

    PubMed

    Zhang, Wangxiang; Fan, Junjun; Tan, Qianqian; Zhao, Mingming; Zhou, Ting; Cao, Fuliang

    2017-01-01

    Malus hupehensis is an excellent Malus rootstock species, known for its strong adverse-resistance and apomixes. In the present study, stem cuttings of M. hupehensis were treated with three types of exogenous hormones, including indole acetic acid (IAA), naphthalene acetic acid (NAA), or green growth regulator (GGR). The effects and mechanisms of exogenous hormone treatment and antioxidant enzyme activity on adventitious root formation were investigated. The results showed that the apparent morphology of the adventitious root had four stages, including root pre-emergence stage (S0), early stage of root formation (S1), massive root formation stage (S2), and later stage of root formation (S3). The suitable concentrations of the three exogenous hormones, IAA, NAA and GGR, were 100 mg·L-1, 300 mg·L-1, and 300 mg·L-1, respectively. They shortened the rooting time by 25-47.4% and increased the rooting percentages of cuttings by 0.9-1.3 times, compared with that in the control. The dispersion in S0 stage was 3.6 times of that in the S1 stage after exogenous hormone application. The earlier the third critical point (P3) appeared, the shorter the rooting time and the greater the rooting percentage of the cuttings. During rhizogenesis, the activities of three antioxidant enzymes (POD, SOD, and PPO) showed an A-shaped trend. However, peak values of enzyme activity appeared at different points, which were 9 d before the P3, P3, and the fourth critical point (P4), respectively. Exogenous hormone treatment reduced the time to reach the peak value by 18 days, although the peak values of the enzymatic activities did not significantly changed. Our results suggested that exogenous hormone treatment mainly acted during the root pre-emergence stage, accelerated the synthesis of antioxidant enzymes, reduced the rooting time, and consequently promoted root formation. The three kinds of antioxidant enzymes acted on different stages of rooting.

  11. Active zone proteins are transported via distinct mechanisms regulated by Par-1 kinase

    PubMed Central

    Barber, Kara R.; Sherman, Michael

    2017-01-01

    Disruption of synapses underlies a plethora of neurodevelopmental and neurodegenerative disease. Presynaptic specialization called the active zone plays a critical role in the communication with postsynaptic neuron. While the role of many proteins at the active zones in synaptic communication is relatively well studied, very little is known about how these proteins are transported to the synapses. For example, are there distinct mechanisms for the transport of active zone components or are they all transported in the same transport vesicle? Is active zone protein transport regulated? In this report we show that overexpression of Par-1/MARK kinase, a protein whose misregulation has been implicated in Autism spectrum disorders (ASDs) and neurodegenerative disorders, lead to a specific block in the transport of an active zone protein component- Bruchpilot at Drosophila neuromuscular junctions. Consistent with a block in axonal transport, we find a decrease in number of active zones and reduced neurotransmission in flies overexpressing Par-1 kinase. Interestingly, we find that Par-1 acts independently of Tau-one of the most well studied substrates of Par-1, revealing a presynaptic function for Par-1 that is independent of Tau. Thus, our study strongly suggests that there are distinct mechanisms that transport components of active zones and that they are tightly regulated. PMID:28222093

  12. Rapid structural alterations of the active zone lead to sustained changes in neurotransmitter release.

    PubMed

    Matz, Jacob; Gilyan, Andrew; Kolar, Annette; McCarvill, Terrence; Krueger, Stefan R

    2010-05-11

    The likelihood with which an action potential elicits neurotransmitter release, the release probability (p(r)), is an important component of synaptic strength. Regulatory mechanisms controlling several steps of synaptic vesicle (SV) exocytosis may affect p(r), yet their relative importance in determining p(r) and eliciting temporal changes in neurotransmitter release at individual synapses is largely unknown. We have investigated whether the size of the active zone cytomatrix is a major determinant of p(r) and whether changes in its size lead to corresponding alterations in neurotransmitter release. We have used a fluorescent sensor of SV exocytosis, synaptophysin-pHluorin, to measure p(r) at individual synapses with high accuracy and employed a fluorescently labeled cytomatrix protein, Bassoon, to quantify the amount of active zone cytomatrix present at these synapses. We find that, for synapses made by a visually identified presynaptic neuron, p(r) is indeed strongly correlated with the amount of active zone cytomatrix present at the presynaptic specialization. Intriguingly, active zone cytomatrices are frequently subject to synapse-specific changes in size on a time scale of minutes. These spontaneous alterations in active zone size are associated with corresponding changes in neurotransmitter release. Our results suggest that the size of the active zone cytomatrix has a large influence on the reliability of synaptic transmission. Furthermore, they implicate mechanisms leading to rapid structural alterations at active zones in synapse-specific forms of plasticity.

  13. Release probability of hippocampal glutamatergic terminals scales with the size of the active zone

    PubMed Central

    Holderith, Noemi; Lorincz, Andrea; Katona, Gergely; Rózsa, Balázs; Kulik, Akos; Watanabe, Masahiko; Nusser, Zoltan

    2012-01-01

    Cortical synapses display remarkable structural, molecular and functional heterogeneity. Our knowledge regarding the relationship between the ultrastructural and functional parameters is still fragmented. Here we asked how the release probability and presynaptic [Ca2+] transients relate to the ultrastructure of rat hippocampal glutamatergic axon terminals. Two-photon Ca2+ imaging-derived optical quantal analysis and correlated electron microscopic reconstructions revealed a tight correlation between the release probability and the active zone area. The peak amplitude of [Ca2+] transients in single boutons also positively correlated with the active zone area. Freeze-fracture immunogold labeling revealed that the voltage-gated Ca2+ channel subunit Cav2.1 and the presynaptic protein Rim1/2 are confined to the active zone and their numbers scale linearly with the active zone area. Gold particles for Cav2.1 showed a nonrandom distribution within the active zones. Our results demonstrate that the number of several active zone proteins, including presynaptic Ca2+ channels, docked vesicles and the release probability scales linearly with the active zone area. PMID:22683683

  14. Community structure and in situ activity of nitrifying bacteria in Phragmites root-associated biofilms.

    PubMed

    Okabe, Satoshi; Nakamura, Yoshiyuki; Satoh, Hisashi

    2012-01-01

    The amount of oxygen released by Phragmites roots and the community structure and in situ activity of nitrifying bacteria in the root biofilms were analyzed by the combined use of 16S rRNA gene-cloning analysis, quantitative PCR (qPCR) assay and microelectrodes. Axial and radial O₂ microprofiles were obtained for individual roots of Phragmites in a horizontal flow reactor fed with artificial medium continuously. Axial O₂ profiles revealed that O₂ was released at a rate of 0.21 μmol O₂ cm⁻² (root surface area) h⁻¹ only in the apical region (up to ca. 40 mm from the root apex), where there was a high abundance (10⁷ to 10⁸ copies g⁻¹ biomass) of Nitrosomonas-like AOB and Nitrospira-like NOB. This abundance, however, sharply declined to the detection limit at positions more basal than 80 mm. Phylogenetic analysis based on 16S rRNA gene identified strains related to Nitrosomonas oligotropha and Nitrosomonas cryotolerans as the predominant AOB and strains related to Nitrospira marina and Nitrospira moscoviensis as the predominant NOB in the root biofilms. Based on radial O₂ microprofiles, the oxic region only extended about 0.5 mm into the surrounding sediment due to a high rate of O₂ consumption in the rhizosphere. The net NH₄⁺ and O₂ consumption rates in the apical region were higher than those determined at the oxic sediment surface in which the abundance of AOB and NOB was one order of magnitude lower than in the rhizosphere. These results clearly indicated that Phragmites root biofilms played an important role in nitrification in the waterlogged anoxic sediment.

  15. Variations in Soil Properties and Herbicide Sorption Coefficients with Depth in Relation to PRZM (Pesticide Root Zone Model) Calculations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    There are few experimental data available on how herbicide sorption coefficients change across small increments within soil profiles. Soil profiles were obtained from three landform elements (eroded upper slope, deposition zone, and eroded waterway) in a strongly eroded agricultural field and segmen...

  16. Anti-inflammatory and anti-cancer activity of mulberry (Morus alba L.) root bark

    PubMed Central

    2014-01-01

    Background Root bark of mulberry (Morus alba L.) has been used in herbal medicine as anti-phlogistic, liver protective, kidney protective, hypotensive, diuretic, anti-cough and analgesic agent. However, the anti-cancer activity and the potential anti-cancer mechanisms of mulberry root bark have not been elucidated. We performed in vitro study to investigate whether mulberry root bark extract (MRBE) shows anti-inflammatory and anti-cancer activity. Methods In anti-inflammatory activity, NO was measured using the griess method. iNOS and proteins regulating NF-κB and ERK1/2 signaling were analyzed by Western blot. In anti-cancer activity, cell growth was measured by MTT assay. Cleaved PARP, ATF3 and cyclin D1 were analyzed by Western blot. Results In anti-inflammatory effect, MRBE blocked NO production via suppressing iNOS over-expression in LPS-stimulated RAW264.7 cells. In addition, MRBE inhibited NF-κB activation through p65 nuclear translocation via blocking IκB-α degradation and ERK1/2 activation via its hyper-phosphorylation. In anti-cancer activity, MRBE deos-dependently induced cell growth arrest and apoptosis in human colorectal cancer cells, SW480. MRBE treatment to SW480 cells activated ATF3 expression and down-regulated cyclin D1 level. We also observed that MRBE-induced ATF3 expression was dependent on ROS and GSK3β. Moreover, MRBE-induced cyclin D1 down-regulation was mediated from cyclin D1 proteasomal degradation, which was dependent on ROS. Conclusions These findings suggest that mulberry root bark exerts anti-inflammatory and anti-cancer activity. PMID:24962785

  17. 77 FR 75610 - Foreign-Trade Zone 22-Chicago, IL, Notification of Proposed Production Activity, Abbott...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-21

    ... Foreign-Trade Zones Board Foreign-Trade Zone 22--Chicago, IL, Notification of Proposed Production Activity, Abbott Laboratories, Inc., AbbVie, Inc. (Pharmaceutical Production), North Chicago, IL, Area Abbott... authority within Subzones 22F and 22S, at sites located in the North Chicago and Lake County, Illinois,...

  18. 78 FR 23220 - Foreign-Trade Zone 22-Chicago, Illinois, Authorization of Production Activity, Abbott...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-18

    ... Foreign-Trade Zones Board Foreign-Trade Zone 22--Chicago, Illinois, Authorization of Production Activity, Abbott Laboratories, Inc., AbbVie, Inc. (Pharmaceutical Production), North Chicago, Illinois, Area On... production authority within Subzones 22F and 22S, respectively, at sites located in the North Chicago...

  19. 77 FR 70139 - Foreign-Trade Zone 8-Toledo, OH; Authorization of Production Activity; Whirlpool Corporation...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 8--Toledo, OH; Authorization of Production Activity; Whirlpool Corporation (Washing Machines); Clyde and Green Springs, OH On July 20, 2012 the...

  20. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Activities Far East Marine Inspection Zone. 3.70-20 Section 3.70-20 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE...

  1. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Activities Far East Marine Inspection Zone. 3.70-20 Section 3.70-20 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE...

  2. 78 FR 56859 - Foreign-Trade Zone 75-Phoenix, Arizona, Authorization of Limited Production Activity, Honeywell...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-16

    ... Foreign-Trade Zones Board Foreign-Trade Zone 75--Phoenix, Arizona, Authorization of Limited Production Activity, Honeywell Aerospace, Inc. (Aircraft Engines, Systems and Components), Phoenix and Tempe, Arizona On May 3, 2013, the City of Phoenix, grantee of FTZ 75, submitted a notification of...

  3. 78 FR 66330 - Foreign-Trade Zone 196-Fort Worth, Texas, Authorization of Production Activity, Flextronics...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-05

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 196--Fort Worth, Texas, Authorization of Production Activity, Flextronics International USA, Inc. (Mobile Phone Assembly and Kitting), Fort Worth, Texas On June 14,...

  4. 78 FR 30862 - Foreign-Trade Zone 41-Milwaukee, Wisconsin; Authorization of Production Activity; CNH America...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-23

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 41--Milwaukee, Wisconsin; Authorization of Production Activity; CNH America, LLC; Subzone 41I (Tractors and Tractor/Combine Components); Racine, Wisconsin...

  5. 77 FR 72816 - Foreign-Trade Zone 20-Suffolk, VA; Authorization of Production Activity; Usui International...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-06

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 20--Suffolk, VA; Authorization of Production Activity; Usui International Corporation (Diesel Engine Fuel Lines); Chesapeake, VA On June 28, 2012, the Virginia...

  6. 78 FR 41911 - Foreign-Trade Zone 161-Sedgwick County, Kansas; Authorization of Production Activity; Siemens...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-12

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 161--Sedgwick County, Kansas; Authorization of Production Activity; Siemens Energy, Inc. (Wind Turbine Nacelles and Hubs); Hutchinson, Kansas On March 7,...

  7. 78 FR 48413 - Foreign-Trade Zone 75-Phoenix, Arizona, Authorization of Production Activity, Orbital Sciences...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-08

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 75--Phoenix, Arizona, Authorization of Production Activity, Orbital Sciences Corporation, (Satellites and Spacecraft Launch Vehicles); Gilbert, Arizona On April...

  8. 78 FR 33808 - Foreign-Trade Zone 50-Long Beach, California; Authorization of Production Activity; Panasonic...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-05

    ... [Federal Register Volume 78, Number 108 (Wednesday, June 5, 2013)] [Notices] [Page 33808] [FR Doc No: 2013-13314] DEPARTMENT OF COMMERCE Foreign-Trade Zones Board [B-13-2013] Foreign-Trade Zone 50--Long Beach, California; Authorization of Production Activity; Panasonic Corporation of North America (Kitting of Consumer Electronics);...

  9. 78 FR 7394 - Foreign-Trade Zone 121-Albany, NY; Authorization of Production Activity; Albany Molecular...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-01

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 121--Albany, NY; Authorization of Production Activity; Albany Molecular Research, Inc.; Subzone 121A (Pharmaceutical Chemicals Production); Rensselaer, NY On September...

  10. 78 FR 68814 - Foreign-Trade Zone 32-Miami, Florida, Authorization of Production Activity, Brightstar...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-15

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 32--Miami, Florida, Authorization of Production Activity, Brightstar Corporation (Cell Phone Kitting), Miami, Florida On June 26, 2013, The Greater Miami Chamber...

  11. 77 FR 55455 - Foreign-Trade Zone 235-Lakewood, NJ, Authorization of Production Activity, Cosmetic Essence...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 235--Lakewood, NJ, Authorization of Production Activity, Cosmetic Essence Innovations, LLC, (Fragrance Bottling), Holmdel, NJ Cosmetic Essence Innovations, LLC...

  12. 77 FR 48127 - Foreign-Trade Zone 20-Suffolk, VA; Notification of Proposed Production Activity, Usui...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 20--Suffolk, VA; Notification of Proposed Production Activity, Usui International Corporation, (Diesel Engine Fuel Lines), Chesapeake, VA The Virginia Port Authority, grantee of FTZ 20, submitted a...

  13. 78 FR 28801 - Foreign-Trade Zone 22-Chicago, Illinois; Authorization of Production Activity Panasonic...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-16

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 22--Chicago, Illinois; Authorization of Production Activity Panasonic Corporation of North America (Kitting of Consumer Electronics) Aurora, Illinois On January...

  14. The effects of dopamine on root growth and enzyme activity in soybean seedlings

    PubMed Central

    Guidotti, Bruno Boni; Gomes, Bruno Ribeiro; Siqueira-Soares, Rita de Cássia; Soares, Anderson Ricardo; Ferrarese-Filho, Osvaldo

    2013-01-01

    In the present study, we investigated the effects of dopamine, an allelochemical exuded from the velvetbean (Mucuna pruriens L DC. var utilis), on the growth and cell viability of soybean (Glycine max L. Merrill) roots. We analyzed the effects of dopamine on superoxide dismutase, phenylalanine ammonia-lyase and cell wall-bound peroxidase activities as well as its effects on lignin contents in the roots. Three-day-old seedlings were cultivated in half-strength Hoagland nutrient solution (pH 6.0), without or with 0.25 to 1.0 mM dopamine, in a growth chamber (25°C, 12L:12D photoperiod, irradiance of 280 μmol m−2 s−1) for 24 h. In general, the length, fresh weight and dry weight of roots, cell viability, PAL and POD activities decreased, while SOD activities increased after dopamine treatment. The content of lignin was not altered. The data demonstrate the susceptibility of soybean to dopamine and reinforce the role of this catecholamine as a strong allelochemical. The results also suggest that dopamine-induced inhibition in soybean roots is not related to the production of lignin, but may be related to damage caused by reactive oxygen species. PMID:23838960

  15. Novel polyacetylene derivatives and their inhibitory activities on acetylcholinesterase obtained from Panax ginseng roots.

    PubMed

    Murata, Kazuya; Iida, Daiki; Ueno, Yoshihiro; Samukawa, Keiichi; Ishizaka, Toshihiko; Kotake, Takeshi; Matsuda, Hideaki

    2017-01-01

    In our research program to identify cholinesterase and β-secretase inhibitors, we investigated Ginseng (root of Panax ginseng), a crude drug described as a multifunctional drug in the ancient Chinese herbal book Shennong Ben Cao Jing. Results from hexane and methanol extracts showed moderate inhibitory activities. This suggests that ginseng roots may be effective for the prevention of and therapy for dementia. We then focused on hexane extracts of raw ginseng root and dried ginseng root since the determination of hexane extract constituents has not been studied extensively. Activity-guided fractionation and purification led to the isolation of 4 polyacetylene compounds; homopanaxynol, homopanaxydol, (9Z)-heptadeca-1, 9-diene-4,6-diyn-3-one, and (8E)-octadeca-1,8-diene-4,6-diyn-3,10-diol. The chemical structures of these compounds, including stereochemistry, were determined. This is the first study to identify the structure of homopanaxynol and homopanaxydol. Moreover, the modes of action of some compounds were characterized as competitive inhibitors. This study showed, for the first time, that polyacetylene compounds possess acetylcholinesterase inhibitory activities.

  16. Selenium-dependent antitumor immunomodulating activity of polysaccharides from roots of A. membranaceus.

    PubMed

    Li, Shuang; Bian, Fuling; Yue, Ling; Jin, Hua; Hong, Zongguo; Shu, Guangwen

    2014-08-01

    Roots of Astragalus membranaceus (Fish.) Bge. var. mongholicus (Bge.) Hsiao (A. membranaceus) have been long used as an auxiliary reagent supporting cancer treatment. Here, we compared the chemical composition and antitumor immunomodulating activity of polysaccharides from roots of A. membranaceus (PAMs) from five major habitats in Inner Mongolia, PR China. We revealed that compositions of monosaccharides and amino acids were comparable among PAMs from different habitats. However, amounts of selenium varied widely in roots of A. membranaceus and PAMs. PAMs selenium-dependently repressed the in vivo proliferation of transplanted H22 ascitic hepatoma and S180 sarcoma cells with low toxic impacts on tumor-bearing mice. Selenium-containing PAMs ameliorated host CD4+ T cell apoptosis and serum cytokine dysregulation induced by tumor transplantation, leading to the enhancement of cytotoxic activities of natural killer and CD8+ T cells. Moreover, PAMs also selenium-dependently improved the phagocytotic function of intra-abdominal macrophages and suppressed M2-like polarization of tumor-associated macrophages. These data suggested that the selenium content varies in the roots of A. membranaceus and PAMs from different geographical origins dramatically and selenium is an important contributor to the antitumor immunomodulation activities of PAMs.

  17. Glucose inhibits root meristem growth via ABA INSENSITIVE 5, which represses PIN1 accumulation and auxin activity in Arabidopsis.

    PubMed

    Yuan, Ting-Ting; Xu, Heng-Hao; Zhang, Kun-Xiao; Guo, Ting-Ting; Lu, Ying-Tang

    2014-06-01

    Glucose functions as a hormone-like signalling molecule that modulates plant growth and development in Arabidopsis thaliana. However, the role of glucose in root elongation remains elusive. Our study demonstrates that high concentrations of glucose reduce the size of the root meristem zone by repressing PIN1 accumulation and thereby reducing auxin levels. In addition, we verified the involvement of ABA INSENSITIVE 5 (ABI5) in this process by showing that abi5-1 is less sensitive to glucose than the wild type, whereas glucose induces ABI5 expression and the inducible overexpression of ABI5 reduces the size of the root meristem zone. Furthermore, the inducible overexpression of ABI5 in PIN1::PIN1-GFP plants reduces the level of PIN1-GFP, but glucose reduces the level of PIN1-GFP to a lesser extent in abi5-1 PIN1::PIN1-GFP plants than in the PIN1::PIN1-GFP control, suggesting that ABI5 is involved in glucose-regulated PIN1 accumulation. Taken together, our data suggest that ABI5 functions in the glucose-mediated inhibition of the root meristem zone by repressing PIN1 accumulation, thus leading to reduced auxin levels in roots.

  18. Genetic variability of oxalate oxidase activity and elongation in water-stressed primary roots of diverse maize and rice lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Previous work on maize primary roots under water stress showed that cell elongation is maintained in the apical region of the growth zone but progressively inhibited further from the apex. In association with these responses, several proteins related to reactive oxygen species (ROS) production, part...

  19. Progressive inhibition by water deficit of cell wall extensibility and growth along the elongation zone of maize roots is related to increased lignin metabolism and progressive stelar accumulation of wall phenolics.

    PubMed

    Fan, Ling; Linker, Raphael; Gepstein, Shimon; Tanimoto, Eiichi; Yamamoto, Ryoichi; Neumann, Peter M

    2006-02-01

    Water deficit caused by addition of polyethylene glycol 6000 at -0.5 MPa water potential to well-aerated nutrient solution for 48 h inhibited the elongation of maize (Zea mays) seedling primary roots. Segmental growth rates in the root elongation zone were maintained 0 to 3 mm behind the tip, but in comparison with well-watered control roots, progressive growth inhibition was initiated by water deficit as expanding cells crossed the region 3 to 9 mm behind the tip. The mechanical extensibility of the cell walls was also progressively inhibited. We investigated the possible involvement in root growth inhibition by water deficit of alterations in metabolism and accumulation of wall-linked phenolic substances. Water deficit increased expression in the root elongation zone of transcripts of two genes involved in lignin biosynthesis, cinnamoyl-CoA reductase 1 and 2, after only 1 h, i.e. before decreases in wall extensibility. Further increases in transcript expression and increased lignin staining were detected after 48 h. Progressive stress-induced increases in wall-linked phenolics at 3 to 6 and 6 to 9 mm behind the root tip were detected by comparing Fourier transform infrared spectra and UV-fluorescence images of isolated cell walls from water deficit and control roots. Increased UV fluorescence and lignin staining colocated to vascular tissues in the stele. Longitudinal bisection of the elongation zone resulted in inward curvature, suggesting that inner, stelar tissues were also rate limiting for root growth. We suggest that spatially localized changes in wall-phenolic metabolism are involved in the progressive inhibition of wall extensibility and root growth and may facilitate root acclimation to drying environments.

  20. Highly oxygenated triterpenoids from the roots of Schisandra chinensis and their anti-inflammatory activities.

    PubMed

    Song, Qiu-Yan; Gao, Kun; Nan, Zhi-Biao

    2016-01-01

    A new highly oxygenated triterpenoid, schinchinenlactone D (1), and three known compounds (2-4) were isolated from the roots of Schisandra chinensis. Their structures were determined by combining the spectroscopic analysis with the theoretical computations. The anti-inflammatory activities of compounds 1-4 were evaluated, and compound 3 exhibits the most significant activity in the inhibition of NO production with an IC50 value of 10.6 μM.

  1. Antiinflammatory, analgesic and antipyretic activities of ethanolic root extract of Croton zambesicus.

    PubMed

    Okokon, Jude E; Nwafor, Paul A

    2010-10-01

    The ethanolic root extract of C. zambesicus (27-81mg/kg) was evaluated for antiiflammatory, analgesic and antipyretic properties in mice. The extract (27-81mg/kg) demonstrated a weak antiinflammatory activity. However, a significant (P<0.01-0.001) analgesic and antipyretic activities were observed in all the experimental models tested. The extract may be exerting its effects through central mechanisms. These findings confirms its ethnomedical use in the treatment of malarial-associated symptoms.

  2. The electrical network of maize root apex is gravity dependent.

    PubMed

    Masi, Elisa; Ciszak, Marzena; Comparini, Diego; Monetti, Emanuela; Pandolfi, Camilla; Azzarello, Elisa; Mugnai, Sergio; Baluška, Frantisek; Mancuso, Stefano

    2015-01-15

    Investigations carried out on maize roots under microgravity and hypergravity revealed that gravity conditions have strong effects on the network of plant electrical activity. Both the duration of action potentials (APs) and their propagation velocities were significantly affected by gravity. Similarly to what was reported for animals, increased gravity forces speed-up APs and enhance synchronized electrical events also in plants. The root apex transition zone emerges as the most active, as well as the most sensitive, root region in this respect.

  3. Associations between active living-oriented zoning and no adult leisure-time physical activity in the U.S.

    PubMed

    Leider, Julien; Chriqui, Jamie F; Thrun, Emily

    2017-02-01

    Nearly one-third of adults report no leisure-time physical activity (LTPA). Governmental and authoritative bodies recognize the role that community design through zoning code changes can play in enabling LTPA. This study examined the association between zoning and no adult LTPA in the U.S. This study was conducted between 2012 and 2016, with analyses occurring in 2015-2016. Zoning codes effective as of 2010 were compiled for jurisdictions located in the 495 most populous U.S. counties and were evaluated for pedestrian-oriented code reform zoning, 11 active living-oriented provisions (e.g., sidewalks, bike-pedestrian connectivity, mixed use, bike lanes) and a summated zoning scale (max=12). Individual-level LTPA data were obtained from the 2012 CDC Behavioral Risk Factor Surveillance System (BRFSS). County-aggregated, population-weighted zoning variables were constructed for linking to BRFSS. Log-log multivariate regressions (N=147,517 adults), controlling for individual and county characteristics and with robust standard errors clustered on county, were conducted to examine associations between zoning and no LTPA. Relative risks (RR) compared predicted lack of LTPA at 0% and 100% county-level population exposure to each zoning predictor. Zoning code reforms were associated with a 13% lower probability of no LTPA (RR: 0.87, 95% CI: 0.82-0.92). Except for crosswalks, all zoning provisions were associated with an 11-16% lower probability of no LTPA. Having all 12 zoning provisions was associated with a 22% lower probability of no LTPA (RR: 0.78, 95% CI: 0.72-0.83). The results suggest that active living-oriented zoning is a policy lever available to communities seeking to reduce rates of no LTPA.

  4. Application of a soil moisture diagnostic equation for estimating root-zone soil moisture in arid and semi-arid regions

    NASA Astrophysics Data System (ADS)

    Pan, Feifei; Nieswiadomy, Michael; Qian, Shuan

    2015-05-01

    Knowledge of soil moisture in the root zone is critical for crop growth estimation and irrigation scheduling. In this study, a soil moisture diagnostic equation is applied to estimate soil moisture at depths of 0-100 cm (because the majority of crop roots are in the top 100 cm of soil) at four USDA Soil Climate Analysis Network (SCAN) sites in arid and semi-arid regions: TX2105 in northwest Texas, NM2015 and NM2108 in east New Mexico, and AZ2026 in southeast Arizona. At each site, a dataset of 5-6 years of records of daily soil moisture, daily mean air temperature, precipitation and downward solar radiation is compiled and processed. Both the sinusoidal wave function of day of year (DOY) and a linear function of the potential evapotranspiration (PET) are used to approximate the soil moisture loss coefficient. The first four years of data are used to derive the soil moisture loss function and the empirical parameters in the soil moisture diagnostic equation. The derived loss function and empirical parameters are then applied to estimate soil moisture in the last fifth or sixth year at each site. Root mean square errors (RMSEs) of the estimated volumetric soil moistures in five different soil columns (i.e., 5 cm, 10 cm, 20 or 30 cm, 50 cm, and 100 cm) are less than 3.2 (%V/V), and the accuracy of the estimated soil moistures using the sinusoidal soil moisture loss function is slightly better than the PET-based loss functions. In addition to the three advantages of this soil moisture diagnostic equation, i.e., (1) non-cumulative errors in the estimated soil moisture, (2) no regular recalibration is required to correct the cumulative errors, and (3) no numerical iteration and initial moisture inputs are needed since only precipitation data are required, this study also demonstrates that the soil moisture diagnostic equation not only can be used to estimate surface soil moisture, but also the entire root-zone soil moisture.

  5. Exploring the Linkage between Activity-Friendly Zoning, Inactivity, and Cancer Incidence in the United States.

    PubMed

    Nicholson, Lisa M; Leider, Julien; Chriqui, Jamie F

    2017-03-07

    Background: Physical activity (PA) protects against cancer and enhances cancer survivorship. Given high inactivity rates nationwide, population-level physical activity facilitators are needed. Several authoritative bodies have recognized that zoning and planning helps create activity-friendly environments. This study examined the association between activity-friendly zoning, inactivity, and cancer in 478 of the most populous U.S. counties.Methods: County geocodes linked county-level data: cancer incidence and smoking (State Cancer Profiles), inactivity (Behavioral Risk Factor Surveillance System), 11 zoning measures (compiled by the study team), and covariates (from the American Community Survey and NAVTEQ). For each zoning measure, single mediation regression models and Sobel tests examined whether activity-friendly zoning was associated with reduced cancer incidence, and whether inactivity mediated those associations. All models were clustered on state with robust SEs and significance at the P < 0.05 level.Results: Zoning for crosswalks, bike-pedestrian connectivity, and bike-pedestrian trails/paths were associated with reduced cancer incidence (β between -0.71 and -1.27, P < 0.05), about 1 case per 100,000 for each 10 percentage-point increase in county population exposure to zoning. Except for crosswalks, each association was mediated by inactivity. However, county smoking attenuated these results, with only crosswalks remaining significant. Results were similar for males (with zoning for bike-pedestrian connectivity, street connectivity, and bike-pedestrian trails/paths), but not females, alone.Conclusions: Zoning can help to create activity-friendly environments that support decreased inactivity, and possibly reduced cancer incidence.Impact: Given low physical activity levels nationwide, cross-sectoral collaborations with urban planning can inform cancer prevention and public health efforts to decrease inactivity and cancer. Cancer Epidemiol Biomarkers Prev

  6. Microbial weathering of apatite and wollastonite in a forest soil: Evidence from minerals buried in a root-free zone

    NASA Astrophysics Data System (ADS)

    Nezat, C. A.

    2011-12-01

    Mineral weathering is an important process in biogeochemical cycling because it releases nutrients from less labile pools (e.g., rocks) to the food chain. A field experiment was undertaken to determine the degree to which microbes - both fungi and bacteria - are responsible for weathering of Ca-bearing minerals. The experiment was performed at the Hubbard Brook Experimental Forest (HBEF) in the northeastern USA, where acid deposition has leached plant-available calcium from soils for decades. Trees obtain soil nutrients through root uptake as well as through mycorrhizal fungi with which they are symbiotically associated. These fungi extend their hyphae from the tree roots into the soil and exude organic acids that may enhance mineral dissolution. The two most common types of symbiotic fungal-tree associations are ectomycorrhizae, which are associated with spruce (Picea), fir (Abies), and beech (Fagus); and arbuscular mycorrhizae which are commonly associated with angiosperms, such as maples (Acer). To examine the role of fungi and bacteria in weathering of Ca- and/or P-bearing minerals, mesh bags containing sand-sized grains of quartz (as a control), quartz plus 1% wollastonite (CaSiO3), or quartz plus 1% apatite (Ca5(PO4)3F) were buried ~15 cm deep in mineral soil beneath American beech, sugar maple, and mixed spruce and balsam fir stands at the HBEF. Half of the bags were constructed of 50-μm mesh to exclude roots but allow fungal hyphae and bacteria to enter the bags; the remaining bags had 1-μm mesh to exclude fungi and roots but allow bacteria to enter. The bags were retrieved ~ 1, 2 or 4 years after burial. Microbial community composition and biomass in the mesh bags and surrounding soil were characterized and quantified using phospholipid fatty acid (PLFA) analysis. Fungal biomass in the soil and control bags did not differ significantly among stand types. In contrast, the degree of fungal colonization in apatite- and wollastonite-amended bags varied

  7. Seed ageing-induced inhibition of germination and post-germination root growth is related to lower activity of plasma membrane H(+)-ATPase in maize roots.

    PubMed

    Sveinsdóttir, Hólmfrídur; Yan, Feng; Zhu, Yiyong; Peiter-Volk, Tina; Schubert, Sven

    2009-01-30

    Seeds of most crops can be severely damaged and lose vigor when stored under conditions of high humidity and temperature. The aged seeds are characterized by delayed germination and slow post-germination growth. To date, little is known about the physiological mechanisms responsible for slow root growth of seedlings derived from aged seeds. Plasma membrane H(+)-ATPase is a universal H(+) pump in plant cells and is involved in various physiological processes including the elongation growth of plant cells. In the present study, we investigated the effect of a mild seed ageing treatment on plasma membrane H(+)-ATPase activity of seedling roots. Maize (Zea mays L.) seeds with 17% water content were aged at 45 degrees C for 30h. The aged seeds showed a 20% reduction in germination. Seedlings from aged seeds grew slowly during an experimental period of 120h after imbibition. Plasma membranes of maize seedling roots were isolated for investigation in vitro. Plasma membrane H(+)-ATPase (EC 3.6.3.6) activity was 14% lower for seedling roots developed from aged seeds as compared to control seeds. Protein gel immunoblotting analysis demonstrated that the reduced activity of plasma membrane H(+)-ATPase was attributed to a decrease in steady-state protein concentration of this enzyme. In conclusion, seed ageing causes a lower steady-state enzyme concentration of the H(+)-ATPase in the plasma membrane, which is related to slow germination and post-germination growth of seedling roots.

  8. The Essential Oils of Rhaponticum carthamoides Hairy Roots and Roots of Soil-Grown Plants: Chemical Composition and Antimicrobial, Anti-Inflammatory, and Antioxidant Activities.

    PubMed

    Skała, Ewa; Rijo, Patrícia; Garcia, Catarina; Sitarek, Przemysław; Kalemba, Danuta; Toma, Monika; Szemraj, Janusz; Pytel, Dariusz; Wysokińska, Halina; Śliwiński, Tomasz

    2016-01-01

    The essential oils were isolated by hydrodistillation from the hairy roots (HR) and roots of soil-grown plants (SGR) of Rhaponticum carthamoides and were analyzed by GC-MS method. In the both essential oils 62 compounds were identified. The root essential oils showed the differences in the qualitative and quantitative composition. The sesquiterpene hydrocarbons (55-62%) dominated in both essential oils. The major compounds of HR essential oil were cyperene, 13-norcypera-1(5),11(12)-diene, and cadalene while aplotaxene, nardosina-1(10),11-diene, and dauca-4(11),8-diene dominated in SGR essential oil. Both essential oils showed antibacterial activity especially against Enterococcus faecalis (ATCC 29212) and Pseudomonas aeruginosa (ATCC 27853) (MIC value = 125 µg/mL). HR and SGR essential oils also decreased the expression of IL-1β, IL-6, and TNF-α and the ROS level in LPS-treatment astrocytes. This is the first report to describe the chemical composition of R. carthamoides essential oil from hairy roots, its protective effect against LPS-induced inflammation and ROS production in astrocytes, and its antimicrobial potential. The results show that R. carthamoides hairy roots may be a valuable source of the essential oil and may be an alternative to the roots of soil-grown plants.

  9. The Essential Oils of Rhaponticum carthamoides Hairy Roots and Roots of Soil-Grown Plants: Chemical Composition and Antimicrobial, Anti-Inflammatory, and Antioxidant Activities

    PubMed Central

    Rijo, Patrícia; Garcia, Catarina; Kalemba, Danuta; Toma, Monika; Szemraj, Janusz; Pytel, Dariusz; Śliwiński, Tomasz

    2016-01-01

    The essential oils were isolated by hydrodistillation from the hairy roots (HR) and roots of soil-grown plants (SGR) of Rhaponticum carthamoides and were analyzed by GC-MS method. In the both essential oils 62 compounds were identified. The root essential oils showed the differences in the qualitative and quantitative composition. The sesquiterpene hydrocarbons (55–62%) dominated in both essential oils. The major compounds of HR essential oil were cyperene, 13-norcypera-1(5),11(12)-diene, and cadalene while aplotaxene, nardosina-1(10),11-diene, and dauca-4(11),8-diene dominated in SGR essential oil. Both essential oils showed antibacterial activity especially against Enterococcus faecalis (ATCC 29212) and Pseudomonas aeruginosa (ATCC 27853) (MIC value = 125 µg/mL). HR and SGR essential oils also decreased the expression of IL-1β, IL-6, and TNF-α and the ROS level in LPS-treatment astrocytes. This is the first report to describe the chemical composition of R. carthamoides essential oil from hairy roots, its protective effect against LPS-induced inflammation and ROS production in astrocytes, and its antimicrobial potential. The results show that R. carthamoides hairy roots may be a valuable source of the essential oil and may be an alternative to the roots of soil-grown plants. PMID:28074117

  10. Hexane soluble extract of Mallotus philippensis (Lam.) Muell. Arg. root possesses anti-leukaemic activity

    PubMed Central

    2013-01-01

    Background Mallotus philippensis (Lam.) Muell. Arg. is a well known medicinal plant of Asia and Australia. Various compounds from different aerial parts of the plant have been reported possessing potent pharmacological, antiviral, antibacterial and cytotoxic activities. We were interested to determine the effects of some root extracts from M. philippensis on human promyelocytic leukemia HL-60 cell proliferation, cell cycle regulators and apoptosis in order to investigate its anti-leukemic potential. Results Root extract of M. philippensis was initially extracted in organic solvents, hexane, ethyl acetate, and n-butanol. The hexane extract showed highest toxicity against p53-deficient HL-60 cells (IC50 1.5 mg dry roots equivalent/ml medium) after 72 h and interestingly, inhibition of cell proliferation was preceded by the upregulation of the proto-oncogenes Cdc25A and cyclin D1 within 24 h. The hexane extract induced 18% apoptosis after 48 h of treatment. Chemical composition of the hexane extract was analyzed by GC-MS and the 90% fragments were matched with polyphenolic compounds. Conclusions The present study confirms that the hexane fraction of M. philippensis root extract possesses anti-leukemic activity in HL-60 cells. The polyphenols were the main compounds of the hexane extract that inhibited proliferation and induced apoptosis. PMID:24041220

  11. A new sesquiterpene lactone from the roots of Saussurea lappa: structure-anticancer activity study.

    PubMed

    Robinson, A; Kumar, T Vijay; Sreedhar, E; Naidu, V G M; Krishna, Sistla Rama; Babu, K Suresh; Srinivas, P V; Rao, J Madhusudana

    2008-07-15

    The dried roots of Saussurea lappa, called costus roots, are used in the traditional system of medicine for the treatment of cancer. In our investigation for the anticancer constituents from the hexane extract of this plant, a new sesquiterpene (1) was isolated along with the known compounds costunolide (2), beta-cyclocostunolide (3), dihydro costunolide (4) and dehydro costuslactone (5). Their structures were established by the extensive spectroscopic analyses. In addition, costunolide and beta-cyclocostunolide derivatives were synthesized using Michael-type addition reaction of NaOMe to the alpha-methylene-gamma-lactone moiety. All the compounds were tested for their in vitro cytotoxic activity. Compound 1 exhibited potent cytotoxic activity and other compounds displayed moderate activity.

  12. Studies on the control of mitotic activity in excised roots. I. The experimental system.

    PubMed

    WILSON, G B; MORRISON, J H; KNOBLOCH, N

    1959-05-25

    The mitotic characteristics of excised roots of the garden pea, Pisum sativum, have been studied under conditions of controlled nutrition. The excised root system was tested with regard to its ability to respond, mitotically, to various carbon sources. Sucrose, glucose, fructose, and DL-glyceraldehyde were found to support mitotic activity in excised roots, galactose and 2-deoxy-D-glucose were toxic, and mannose ineffective. Initiation of mitotic activity in the presence of glucose was inhibited by the respiratory poisons, KCN and malonic acid, the uncoupling agent, 2,4-dinitrophenol, but was not notably affected by the protein synthesis inhibitor, chloramphenicol. The glucose-induced response in mitotic activity was not affected by the carcinogen, urethan, and indeed, there is some evidence that the response was actually enhanced. The fact that KCN, malonic acid, and probably 2,4-dinitrophenol, in suitable concentrations inhibit the onset of cell division suggests that some level of operation of the Krebs' cycle is essential for commission of cells into mitosis. Likewise, failure to inhibit cells in the process of active mitosis by KCN and malonic acid is not inconsistent with the idea that there is a shift from reliance on aerobic to anaerobic respiration between antephase and active mitosis.

  13. Presynaptic spinophilin tunes neurexin signalling to control active zone architecture and function

    PubMed Central

    Muhammad, Karzan; Reddy-Alla, Suneel; Driller, Jan H; Schreiner, Dietmar; Rey, Ulises; Böhme, Mathias A.; Hollmann, Christina; Ramesh, Niraja; Depner, Harald; Lützkendorf, Janine; Matkovic, Tanja; Götz, Torsten; Bergeron, Dominique D.; Schmoranzer, Jan; Goettfert, Fabian; Holt, Mathew; Wahl, Markus C.; Hell, Stefan W.; Scheiffele, Peter; Walter, Alexander M.; Loll, Bernhard; Sigrist, Stephan J.

    2015-01-01

    Assembly and maturation of synapses at the Drosophila neuromuscular junction (NMJ) depend on trans-synaptic neurexin/neuroligin signalling, which is promoted by the scaffolding protein Syd-1 binding to neurexin. Here we report that the scaffold protein spinophilin binds to the C-terminal portion of neurexin and is needed to limit neurexin/neuroligin signalling by acting antagonistic to Syd-1. Loss of presynaptic spinophilin results in the formation of excess, but atypically small active zones. Neuroligin-1/neurexin-1/Syd-1 levels are increased at spinophilin mutant NMJs, and removal of single copies of the neurexin-1, Syd-1 or neuroligin-1 genes suppresses the spinophilin-active zone phenotype. Evoked transmission is strongly reduced at spinophilin terminals, owing to a severely reduced release probability at individual active zones. We conclude that presynaptic spinophilin fine-tunes neurexin/neuroligin signalling to control active zone number and functionality, thereby optimizing them for action potential-induced exocytosis. PMID:26471740

  14. The Rhizosphere Zone: A Hot Spot of Microbial Activity and Methylmercury Production in Saltmarsh Sediments of San Francisco Bay, California

    NASA Astrophysics Data System (ADS)

    Windham-Myers, L.; Marvin-Dipasquale, M.; Voytek, M.; Kirshtein, J.; Krabbenhoft, D. P.; Agee, J. L.; Cox, M.; Kakouros, E.; Collins, J. N.; Yee, D.

    2008-12-01

    Tidal marshes of varying hydrology and salinity have been shown to have high rates of microbial methylmercury (MeHg) production, especially the periodically flooded, higher elevations which are densely vegetated with shallowly rooted plants. The specific influence of emergent wetland plants and their active rhizosphere (root zone) on mercury (Hg) biogeochemistry, however, is poorly understood. Seasonal and spatial patterns of Hg biogeochemistry were examined in 2005 and 2006 at three marshes along a salinity gradient of the Petaluma River, in Northern San Francisco Bay, California. In addition, to directly examine the influence of rhizosphere activity on MeHg production, a suite of devegetation experiments was conducted in 2006 within each marsh using paired vegetated and devegetated plots in two marsh subhabitats: poorly- drained interior sites and well-drained "edge" sites near slough channels. Surface sediment (0-2cm) was sampled in both April and August from these plots, as well as from 1st and 3rd order slough channels that were naturally free of vegetation. Vegetated marsh sites produced 3- to19-fold more MeHg than did slough sites, and MeHg production rates were greater in marsh interior sites compared to more oxic marsh "edge" sites. Microbial biomass (ng DNA gdrysed) was greater in vegetated marsh settings, compared to slough channels, and increased significantly between April and August at all marsh sites. Despite this seasonal increase in microbial biomass, MeHg concentrations and production rates decreased from April to August in vegetated surface sediments. Microbial indicators of methylation also decreased from April to August, including rates of microbial sulfate reduction and the abundance of iron- and sulfate- reducing bacterial DNA. Results from the devegetated plots suggest that root exudation of fermentative labile carbon to surface soils is responsible for the higher microbial biomass, and the higher relative abundance of iron- and sulfate

  15. Effect of photo-activated disinfection on bond strength of three different root canal sealers

    PubMed Central

    Ok, Evren; Ertas, Huseyin; Saygili, Gokhan; Gok, Tuba

    2014-01-01

    Introduction: The aim of this in vitro study was to evaluate the bond strength of Photo-Activated Disinfection (PAD) system to dentin with different root canal sealers by using a push-out test design. Materials and Methods: A total of 30 extracted mandibular premolar teeth with single and straight roots were used. The crowns were removed and the root canals were prepared by using ProTaper rotary files. The smear layer was removed and the roots were randomly divided into two groups (n = 15) according to the use of PAD system as the final disinfecting agent. Each group was then divided into 6 (n = 5) subgroups and obturated with gutta-percha and 3 different root canal sealers. The groups were Group 1: Sodium hypochlorite (NaOCl) + ethylenediaminetetraacetic acid (EDTA)-AH Plus sealer; Group 2: NaOCl + EDTA + PAD-AH Plus; Group 3: NaOCl + EDTA-Sealapex; Group 4: NaOCl + EDTA + PAD-Sealapex; Group 5: NaOCl + EDTA-mineral trioxide aggregate (MTA)-Fiallapex; and Group 6: NaOCl + EDTA + PAD-MTA-Fillapex. 1-mm thickness horizontal sections (n: 5 × 4 = 20) were sliced for the push-out bond strength measurement. Results: Group 3 and 4 showed significantly lower bond strengths compared with all the other groups (P < 0.05). No statistically significant difference was found among Groups 1, 2 and 5, but there was statistically significant difference between Group 5 and 6 (P < 0.05). Conclusion: This in vitro study indicated that the PAD system adversely affected the bond strength of the MTA Fillapex root canal sealer. PMID:24966752

  16. Substrate supply, fine roots, and temperature control proteolytic enzyme activity in temperate forest soils.

    PubMed

    Brzostek, Edward R; Finzi, Adrien C

    2011-04-01

    Temperature and substrate availability constrain the activity of the extracellular enzymes that decompose and release nutrients from soil organic matter (SOM). Proteolytic enzymes are the primary class of enzymes involved in the depolymerization of nitrogen (N) from proteinaceous components of SOM, and their activity affects the rate of N cycling in forest soils. The objectives of this study were to determine whether and how temperature and substrate availability affect the activity of proteolytic enzymes in temperate forest soils, and whether the activity of proteolytic enzymes and other enzymes involved in the acquisition of N (i.e., chitinolytic and ligninolytic enzymes) differs between trees species that form associations with either ectomycorrhizal or arbuscular mycorrhizal fungi. Temperature limitation of proteolytic enzyme activity was observed only early in the growing season when soil temperatures in the field were near 4 degrees C. Substrate limitation to proteolytic activity persisted well into the growing season. Ligninolytic enzyme activity was higher in soils dominated by ectomycorrhizal associated tree species. In contrast, the activity of proteolytic and chitinolytic enzymes did not differ, but there were differences between mycorrhizal association in the control of roots on enzyme activity. Roots of ectomycorrhizal species but not those of arbuscular mycorrhizal species exerted significant control over proteolytic, chitinolytic, and ligninolytic enzyme activity; the absence of ectomycorrhizal fine roots reduced the activity of all three enzymes. These results suggest that climate warming in the absence of increases in substrate availability may have a modest effect on soil-N cycling, and that global changes that alter belowground carbon allocation by trees are likely to have a larger effect on nitrogen cycling in stands dominated by ectomycorrhizal fungi.

  17. Evaluation of antioxidant and urease inhibition activities of roots of Glycyrrhiza glabra.

    PubMed

    Lateef, Mehreen; Iqbal, Lubna; Fatima, Nudrat; Siddiqui, Kauser; Afza, Nighat; Zia-ul-Haq, Muhammad; Ahmad, Mansoor

    2012-01-01

    The object of this study is to determine the antioxidant activity of extracts from Glycyrrhiza glabra roots. The parent extract is methanolic extract while its sub fractions were prepared in ethyl acetate, chloroform, and n-butanol. The method based on scavenging activity and reduction capability of 1, 1-diphenyl-2-picrylhydrazyl radical (DPPH). Urease inhibition activities of these extracts were also evaluated. Chloroform fraction was the most effective antioxidant with 87.7% activity but the activity is less than the crude methanolic extract i.e. 90%. Chloroform fraction showed the same trend in reducing power as that in radical scavenging activity. However n- butanol extract was devoid of any activity when compared to standard BHA. Crude methanolic fraction and its sub-fractions were also screened for enzyme inhibition activities using jackbean urease as substrate. Significant anti urease activity i.e. 72 % was observed in the ethyl acetate fraction with respect to standard inhibitor thiourea.

  18. Group Problem Solving as a Zone of Proximal Development activity

    NASA Astrophysics Data System (ADS)

    Brewe, Eric

    2006-12-01

    Vygotsky described learning as a process, intertwined with development, which is strongly influenced by social interactions with others that are at differing developmental stages.i These interactions create a Zone of Proximal Development for each member of the interaction. Vygotsky’s notion of social constructivism is not only a theory of learning, but also of development. While teaching introductory physics in an interactive format, I have found manifestations of Vygotsky’s theory in my classroom. The source of evidence is a paired problem solution. A standard mechanics problem was solved by students in two classes as a homework assignment. Students handed in the homework and then solved the same problem in small groups. The solutions to both the group and individual problem were assessed by multiple reviewers. In many cases the group score was the same as the highest individual score in the group, but in some cases, the group score was higher than any individual score. For this poster, I will analyze the individual and group scores and focus on three groups solutions and video that provide evidence of learning through membership in a Zone of Proximal Development. Endnotes i L. Vygotsky -Mind and society: The development of higher mental processes. Cambridge, MA: Harvard University Press. (1978).

  19. PP2A and GSK-3beta act antagonistically to regulate active zone development.

    PubMed

    Viquez, Natasha M; Füger, Petra; Valakh, Vera; Daniels, Richard W; Rasse, Tobias M; DiAntonio, Aaron

    2009-09-16

    The synapse is composed of an active zone apposed to a postsynaptic cluster of neurotransmitter receptors. Each Drosophila neuromuscular junction comprises hundreds of such individual release sites apposed to clusters of glutamate receptors. Here, we show that protein phosphatase 2A (PP2A) is required for the development of structurally normal active zones opposite glutamate receptors. When PP2A is inhibited presynaptically, many glutamate receptor clusters are unapposed to Bruchpilot (Brp), an active zone protein required for normal transmitter release. These unapposed receptors are not due to presynaptic retraction of synaptic boutons, since other presynaptic components are still apposed to the entire postsynaptic specialization. Instead, these data suggest that Brp localization is regulated at the level of individual release sites. Live imaging of glutamate receptors demonstrates that this disruption to active zone development is accompanied by abnormal postsynaptic development, with decreased formation of glutamate receptor clusters. Remarkably, inhibition of the serine-threonine kinase GSK-3beta completely suppresses the active zone defect, as well as other synaptic morphology phenotypes associated with inhibition of PP2A. These data suggest that PP2A and GSK-3beta function antagonistically to control active zone development, providing a potential mechanism for regulating synaptic efficacy at a single release site.

  20. Comparative effect of partial root-zone drying and deficit irrigation on incidence of blossom-end rot in tomato under varied calcium rates.

    PubMed

    Sun, Yanqi; Feng, Hao; Liu, Fulai

    2013-04-01

    This study investigated the comparative effects of reduced irrigation regimes--partial root-zone drying (PRD) and conventional deficit irrigation (DI)--on the incidence of blossom-end rot (BER) in tomato (Solanum lycopersicum L.) under three Ca-fertilization rates: 0, 100, and 200mg Ca kg(-1) soil (denoted Ca0, Ca1, and Ca2, respectively). The plants were grown in split-root pots in a climate-controlled glasshouse and treated with PRD and DI during early flowering to the fruit maturity stage. The results showed that, in comparison with DI treatment, PRD significantly reduced BER incidence. A greater xylem sap abscisic acid concentration, lower stomatal conductance, and higher plant water status in the PRD in relation to the DI plants might have contributed to the increased fruit Ca uptake, and could have reduced BER development in tomato fruits. Therefore, under conditions with limited freshwater resources, application of PRD irrigation could be a promising approach for saving water and for preventing BER development in tomatoes.

  1. Comparative effect of partial root-zone drying and deficit irrigation on incidence of blossom-end rot in tomato under varied calcium rates

    PubMed Central

    Sun, Yanqi; Feng, Hao; Liu, Fulai

    2013-01-01

    This study investigated the comparative effects of reduced irrigation regimes—partial root-zone drying (PRD) and conventional deficit irrigation (DI)—on the incidence of blossom-end rot (BER) in tomato (Solanum lycopersicum L.) under three Ca-fertilization rates: 0, 100, and 200mg Ca kg–1 soil (denoted Ca0, Ca1, and Ca2, respectively). The plants were grown in split-root pots in a climate-controlled glasshouse and treated with PRD and DI during early flowering to the fruit maturity stage. The results showed that, in comparison with DI treatment, PRD significantly reduced BER incidence. A greater xylem sap abscisic acid concentration, lower stomatal conductance, and higher plant water status in the PRD in relation to the DI plants might have contributed to the increased fruit Ca uptake, and could have reduced BER development in tomato fruits. Therefore, under conditions with limited freshwater resources, application of PRD irrigation could be a promising approach for saving water and for preventing BER development in tomatoes. PMID:23530128

  2. A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding in Solanum dulcamara.

    PubMed

    Dawood, Thikra; Yang, Xinping; Visser, Eric J W; Te Beek, Tim A H; Kensche, Philip R; Cristescu, Simona M; Lee, Sangseok; Floková, Kristýna; Nguyen, Duy; Mariani, Celestina; Rieu, Ivo

    2016-04-01

    Soil flooding is a common stress factor affecting plants. To sustain root function in the hypoxic environment, flooding-tolerant plants may form new, aerenchymatous adventitious roots (ARs), originating from preformed, dormant primordia on the stem. We investigated the signaling pathway behind AR primordium reactivation in the dicot species Solanum dulcamara Transcriptome analysis indicated that flooding imposes a state of quiescence on the stem tissue, while increasing cellular activity in the AR primordia. Flooding led to ethylene accumulation in the lower stem region and subsequently to a drop in abscisic acid (ABA) level in both stem and AR primordia tissue. Whereas ABA treatment prevented activation of AR primordia by flooding, inhibition of ABA synthesis was sufficient to activate them in absence of flooding. Together, this reveals that there is a highly tissue-specific response to reduced ABA levels. The central role for ABA in the response differentiates the pathway identified here from the AR emergence pathway known from rice (Oryza sativa). Flooding and ethylene treatment also induced expression of the polar auxin transporter PIN2, and silencing of this gene or chemical inhibition of auxin transport inhibited primordium activation, even though ABA levels were reduced. Auxin treatment, however, was not sufficient for AR emergence, indicating that the auxin pathway acts in parallel with the requirement for ABA reduction. In conclusion, adaptation of S. dulcamara to wet habitats involved co-option of a hormonal signaling cascade well known to regulate shoot growth responses, to direct a root developmental program upon soil flooding.

  3. Antimicrobial activity of ProRoot MTA in contact with blood

    PubMed Central

    Farrugia, C.; Baca, P.; Camilleri, J.; Arias Moliz, M. T.

    2017-01-01

    Dental materials based on Portland cement, which is used in the construction industry have gained popularity for clinical use due to their hydraulic properties, the interaction with tooth tissue and their antimicrobial properties. The antimicrobial properties are optimal in vitro. However in clinical use contact with blood may affect the antimicrobial properties. This study aims to assess whether antimicrobial properties of the Portland cement-based dental cements such as mineral trioxide aggregate (MTA) are also affected by contact with blood present in clinical situations. ProRoot MTA, a Portland cement-based dental cement was characterized following contact with water, or heparinized blood after 1 day and 7 days aging. The antimicrobial activity under the mentioned conditions was assessed using 3 antimicrobial tests: agar diffusion test, direct contact test and intratubular infection test. MTA in contact with blood was severely discoloured, exhibited an additional phosphorus peak in elemental analysis, no calcium hydroxide peaks and no areas of bacterial inhibition growth in the agar diffusion test were demonstrated. ProRoot MTA showed limited antimicrobial activity, in both the direct contact test and intratubular infection test. When aged in water ProRoot MTA showed higher antimicrobial activity than when aged in blood. Antimicrobial activity reduced significantly after 7 days. Further assessment is required to investigate behaviour in clinical situations. PMID:28128328

  4. Diuretic Activity of Ethanolic Root Extract of Mimosa Pudica in Albino Rats

    PubMed Central

    SL, Shruthi; PS, Vaibhavi; VH, Pushpa; AM, Satish; Sibgatullah, Mohammad

    2015-01-01

    Introducation Diuretics are the drugs which increase the urine output. This property is useful in various pathological conditions of fluid overload. The presently available diuretics have lot of adverse effects. Our study has evaluated the diuretic activity of ethanolic root extract of Mimosa pudica as an alternative/new drug which may induce diuresis. Aim To evaluate the diuretic activity of ethanolic root extract of Mimosa pudicaa in albino rats. Materials and Methods Ethanolic root extract of Mimosa pudica (EEMP) was prepared using soxhlet’s apparatus. Albino rats were divided into 5 groups of 6 rats each. Group-I (Control) received distilled water 25ml/kg orally. Group-II (Standard) received Furosemide 20mg/kg orally. Group-III received EEMP 100 mg/kg, Group-IV received EEMP 200 mg/kg and Group-V received EEMP 400 mg/kg. The urine samples were collected for all the groups upto 5 hours after dosing and urine volume was measured. Urine was analysed for electrolytes (Na+, K+ and Cl-). ANOVA, Dunnet’s test and p-values were measured and data was analysed. Results EEMP exhibited significant diuretic activity by increasing urine volume and also by enhancing elimination of Sodium (Na+), Potassium (K+) and Chloride (Cl-) at doses of 100 and 200mg/kg. Conclusion EEMP possesses significant diuretic activity and has a beneficial role in volume overload conditions. PMID:26870704

  5. Antimicrobial activity of ProRoot MTA in contact with blood.

    PubMed

    Farrugia, C; Baca, P; Camilleri, J; Arias Moliz, M T

    2017-01-27

    Dental materials based on Portland cement, which is used in the construction industry have gained popularity for clinical use due to their hydraulic properties, the interaction with tooth tissue and their antimicrobial properties. The antimicrobial properties are optimal in vitro. However in clinical use contact with blood may affect the antimicrobial properties. This study aims to assess whether antimicrobial properties of the Portland cement-based dental cements such as mineral trioxide aggregate (MTA) are also affected by contact with blood present in clinical situations. ProRoot MTA, a Portland cement-based dental cement was characterized following contact with water, or heparinized blood after 1 day and 7 days aging. The antimicrobial activity under the mentioned conditions was assessed using 3 antimicrobial tests: agar diffusion test, direct contact test and intratubular infection test. MTA in contact with blood was severely discoloured, exhibited an additional phosphorus peak in elemental analysis, no calcium hydroxide peaks and no areas of bacterial inhibition growth in the agar diffusion test were demonstrated. ProRoot MTA showed limited antimicrobial activity, in both the direct contact test and intratubular infection test. When aged in water ProRoot MTA showed higher antimicrobial activity than when aged in blood. Antimicrobial activity reduced significantly after 7 days. Further assessment is required to investigate behaviour in clinical situations.

  6. Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity

    PubMed Central

    Werner, Tomáš; Motyka, Václav; Laucou, Valérie; Smets, Rafaël; Van Onckelen, Harry; Schmülling, Thomas

    2003-01-01

    Cytokinins are hormones that regulate cell division and development. As a result of a lack of specific mutants and biochemical tools, it has not been possible to study the consequences of cytokinin deficiency. Cytokinin-deficient plants are expected to yield information about processes in which cytokinins are limiting and that, therefore, they might regulate. We have engineered transgenic Arabidopsis plants that overexpress individually six different members of the cytokinin oxidase/dehydrogenase (AtCKX) gene family and have undertaken a detailed phenotypic analysis. Transgenic plants had increased cytokinin breakdown (30 to 45% of wild-type cytokinin content) and reduced expression of the cytokinin reporter gene ARR5:GUS (β-glucuronidase). Cytokinin deficiency resulted in diminished activity of the vegetative and floral shoot apical meristems and leaf primordia, indicating an absolute requirement for the hormone. By contrast, cytokinins are negative regulators of root growth and lateral root formation. We show that the increased growth of the primary root is linked to an enhanced meristematic cell number, suggesting that cytokinins control the exit of cells from the root meristem. Different AtCKX-green fluorescent protein fusion proteins were localized to the vacuoles or the endoplasmic reticulum and possibly to the extracellular space, indicating that subcellular compartmentation plays an important role in cytokinin biology. Analyses of promoter:GUS fusion genes showed differential expression of AtCKX genes during plant development, the activity being confined predominantly to zones of active growth. Our results are consistent with the hypothesis that cytokinins have central, but opposite, regulatory functions in root and shoot meristems and indicate that a fine-tuned control of catabolism plays an important role in ensuring the proper regulation of cytokinin functions. PMID:14555694

  7. Different peroxidase activities and expression of abiotic stress-related peroxidases in apical root segments of wheat genotypes with different drought stress tolerance under osmotic stress.

    PubMed

    Csiszár, Jolán; Gallé, Agnes; Horváth, Edit; Dancsó, Piroska; Gombos, Magdolna; Váry, Zsolt; Erdei, László; Györgyey, János; Tari, Irma

    2012-03-01

    One-week-old seedlings of Triticum aestivum L. cv. Plainsman V, a drought tolerant; and Cappelle Desprez, a drought sensitive wheat cultivar were subjected gradually to osmotic stress using polyethylene glycol (PEG 6000) reaching 400 mOsm on the 11th day. Compared to controls cv. Plainsman V maintained the root growth and relative water content of root tissues, while these parameters were decreased in the drought sensitive cv. Cappelle Desprez under PEG-mediated osmotic stress. Simultaneously, H(2)O(2) content in 1-cm-long apical segment of roots comprising the proliferation and elongation zone, showed a transient increase in cv. Plainsman V and a permanent raise in cv. Cappelle Desprez. Measurements of the transcript levels of selected class III peroxidase (TaPrx) coding sequences revealed significant differences between the two cultivars on the 9th day, two days after applying 100 mOsm PEG. The abundance of TaPrx04 transcript was enhanced transitionally in the root apex of cv. Plainsman V but decreased in cv. Cappelle Desprez under osmotic stress while the expression of TaPrx01, TaPrx03, TaPrx19, TaPrx68, TaPrx107 and TaPrx109-C decreased to different extents in both cultivars. After a transient decrease, activities of soluble peroxidase fractions of crude protein extracts rose in both cultivars on day 11, but the activities of cell wall-bound fractions increased only in cv. Cappelle Desprez under osmotic stress. Parallel with high H(2)O(2) content of the tissues, certain isoenzymes of covalently bound fraction in cv. Cappelle Desprez showed increased activity suggesting that they may limit the extension of root cell walls in this cultivar.

  8. Root-Zone Warming Differently Benefits Mature and Newly Unfolded Leaves of Cucumis sativus L. Seedlings under Sub-Optimal Temperature Stress

    PubMed Central

    Miao, Yanxiu; Gao, Lihong

    2016-01-01

    Sub-optimal temperature extensively suppresses crop growth during cool-season greenhouse production. Root-zone (RZ) warming is considered an economical option to alleviate crop growth reduction. In this study we cultivated cucumber seedlings in nutrient solution under different air-RZ temperature treatments to investigate the effects of RZ warming on seedling growth- and photosynthesis-related parameters in leaves. The air-RZ temperature treatments included sub-optimal RZ temperature 13°C and sub-optimal air temperature 20/12°C (day/night) (S13), RZ warming at 19°C and sub-optimal air temperature (S19), and RZ warming at 19°C and optimal air temperature 26/18°C (day/night) (O19). In addition, for each air-RZ temperature treatment, half of the seedlings were also treated with 2% (m/m) polyethylene glycol (PEG) dissolved in nutrient solution to distinguish the effect of root-sourced water supply from RZ temperature. At the whole-plant level, S19 significantly increased the relative growth rate (RGR) by approximately 18% compared with S13, although the increase was less than in O19 (50%) due to delayed leaf emergence. S19 alleviated both diffusive and metabolic limitation of photosynthesis in mature leaves compared with S13, resulting in a photosynthetic rate similar to that in O19 leaves. In newly unfolded leaves, S19 significantly promoted leaf area expansion and alleviated stomatal limitation of photosynthesis compared with S13. PEG addition had a limited influence on RGR and leaf photosynthesis, but significantly suppressed new leaf expansion. Thus, our results indicate that under sub-optimal temperature conditions, RZ warming promotes cucumber seedling growth by differently benefiting mature and newly unfolded leaves. In addition, RZ warming enhanced root-sourced water supply, mainly promoting new leaf expansion, rather than photosynthesis. PMID:27152599

  9. Long-distance signals regulating stomatal conductance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying.

    PubMed

    Sobeih, Wagdy Y; Dodd, Ian C; Bacon, Mark A; Grierson, Donald; Davies, William J

    2004-11-01

    Tomato (Lycopersicon esculentum Mill. cv. Ailsa Craig) plants were grown with roots split between two soil columns. After plant establishment, water was applied daily to one (partial root-zone drying-PRD) or both (well-watered control-WW) columns. Water was withheld from the other column in the PRD treatment, to expose some roots to drying soil. Soil and plant water status were monitored daily and throughout diurnal courses. Over 8 d, there were no treatment differences in leaf water potential (psileaf) even though soil moisture content of the upper 6 cm (theta) of the dry column in the PRD treatment decreased by up to 70%. Stomatal conductance (gs) of PRD plants decreased (relative to WW plants) when of the dry column decreased by 45%. Such closure coincided with increased xylem sap pH and did not require increased xylem sap abscisic acid (ABA) concentration ([X-ABA]). Detached leaflet ethylene evolution of PRD plants increased when of the dry column decreased by 55%, concurrent with decreased leaf elongation. The physiological significance of enhanced ethylene evolution of PRD plants was examined using a transgenic tomato (ACO1AS) with low stress-induced ethylene production. In response to PRD, ACO1AS and wild-type plants showed similar xylem sap pH, [X-ABA] and gs, but ACO1AS plants showed neither enhanced ethylene evolution nor significant reductions in leaf elongation. Combined use of genetic technologies to reduce ethylene production and agronomic technologies to sustain water status (such as PRD) may sustain plant growth under conditions where yield would otherwise be significantly reduced.

  10. Evaluation of total phenolic compounds and insecticidal and antioxidant activities of tomato hairy root extract.

    PubMed

    Singh, Harpal; Dixit, Sameer; Verma, Praveen Chandra; Singh, Pradhyumna Kumar

    2014-03-26

    Tomatoes are one of the most consumed crops in the whole world because of their versatile importance in dietary food as well as many industrial applications. They are also a rich source of secondary metabolites, such as phenolics and flavonoids. In the present study, we described a method to produce these compounds from hairy roots of tomato (THRs). Agrobacterium rhizogenes strain A4 was used to induce hairy roots in the tomato explants. The Ri T-DNA was confirmed by polymerase chain reaction amplification of the rolC gene. Biomass accumulation of hairy root lines was 1.7-3.7-fold higher compared to in vitro grown roots. Moreover, THRs efficiently produced several phenolic compounds, such as rutin, quercetin, kaempferol, gallic acid, protocatechuic acid, ferulic acid, colorogenic acid, and caffeic acid. Gallic acid [34.02 μg/g of dry weight (DW)] and rutin (20.26 μg/g of DW) were the major phenolic acid and flavonoid produced by THRs, respectively. The activities of reactive oxygen species enzymes (catalase, ascorbate peroxidase, and superoxide dismutase) were quantified. The activity of catalase in THRs was 0.97 ± 0.03 mM H2O2 min(-1) g(-1), which was 1.22-fold (0.79 ± 0.09 mM H2O2 min(-1) g(-1)) and 1.59-fold (0.61 ± 0.06 mM H2O2 min(-1) g(-1)) higher than field grown and in vitro grown roots, respectively. At 100 μL/g concentration, the phenolic compound extract caused 53.34 and 40.00% mortality against Helicoverpa armigera and Spodoptera litura, respectively, after 6 days. Surviving larvae of H. armigera and S. litura on the phenolic compound extract after 6 days showed 85.43 and 86.90% growth retardation, respectively.

  11. Carbon Dioxide Effects on Ethanol Production, Pyruvate Decarboxylase, and Alcohol Dehydrogenase Activities in Anaerobic Sweet Potato Roots 1

    PubMed Central

    Chang, Ling A.; Hammett, Larry K.; Pharr, David M.

    1983-01-01

    The effect of varied anaerobic atmospheres on the metabolism of sweet potato (Ipomoea batatas [L.] Lam.) roots was studied. The internal gas atmospheres of storage roots changed rapidly when the roots were submerged under water. O2 and N2 gases disappeared quickly and were replaced by CO2. There were no appreciable differences in gas composition among the four cultivars that were studied. Under different anaerobic conditions, ethanol concentration in the roots was highest in a CO2 environment, followed by submergence and a N2 environment in all the cultivars except one. A positive relationship was found between ethanol production and pyruvate decarboxylase activity from both 100% CO2-treated and 100% N2-treated roots. CO2 atmospheres also resulted in higher pyruvate decarboxylase activity than did N2 atmospheres. Concentrations of CO2 were higher within anaerobic roots than those in the ambient anaerobic atmosphere. The level of pyruvate decarboxylase and ethanol in anaerobic roots was proportional to the ambient CO2 concentration. The measurable activity of pyruvate decarboxylase that was present in the roots was about 100 times less than that of alcohol dehydrogenase. Considering these observations, it is suggested that the rate-limiting enzyme for ethanol biosynthesis in sweet potato storage roots under anoxia is likely to be pyruvate decarboxylase rather than alcohol dehydrogenase. PMID:16662798

  12. Activated platelets form protected zones of adhesion on fibrinogen and fibronectin-coated surfaces

    PubMed Central

    1993-01-01

    Leukocytes form zones of close apposition when they adhere to ligand- coated surfaces. Because plasma proteins are excluded from these contact zones, we have termed them protected zones of adhesion. To determine whether platelets form similar protected zones of adhesion, gel-filtered platelets stimulated with thrombin or ADP were allowed to adhere to fibrinogen- or fibronectin-coated surfaces. The protein- coated surfaces with platelets attached were stained with either fluorochrome-conjugated goat anti-human fibrinogen or anti-human fibronectin antibodies, or with rhodamine-conjugated polyethylene glycol polymers. Fluorescence microscopy revealed that F(ab')2 anti- fibrinogen (100 kD) did not penetrate into the contact zones between stimulated platelets and the underlying fibrinogen-coated surface, while Fab antifibrinogen (50 kD) and 10 kD polyethylene glycol readily penetrated and stained the substrate beneath the platelets. Thrombin- or ADP-stimulated platelets also formed protected zones of adhesion on fibronectin-coated surfaces. F(ab')2 anti-fibronectin and 10 kD polyethylene glycol were excluded from these adhesion zones, indicating that they are much less permeable than those formed by platelets on fibrinogen-coated surfaces. The permeability properties of protected zones of adhesion formed by stimulated platelets on surfaces coated with both fibrinogen and fibronectin were similar to the zones of adhesion formed on fibronectin alone. mAb 7E3, directed against the alpha IIb beta 3 integrin blocked the formation of protected adhesion zones between thrombin-stimulated platelets and fibrinogen or fibronectin coated surfaces. mAb C13 is directed against the alpha 5 beta 1 integrin on platelets. Stimulated platelets treated with this mAb formed protected zones of adhesion on surfaces coated with fibronectin. These protected zones were impermeable to F(ab')2 antifibronectin but were permeable to 10 kD polyethylene glycol. These results show that activated

  13. Study of chemical composition and antimicrobial activity of leaves and roots of Scrophularia ningpoensis.

    PubMed

    Li, Jing; Huang, Xiaoyan; Du, Xianjie; Sun, Wenji; Zhang, Yongmin

    2009-01-01

    Two saponins: scrokoelziside A (1), scrokoelziside B (2), one iridoid glycoside, eurostoside (3), and two flavonoids: nepitrin (4) and homoplantaginin (5), were isolated from the leaves of Scrophularia ningpoensis for the first time. Moreover, eight known compounds: cane sugar (6), harpagide (7), aucubin (8), 6-O-methylcatalpol (9), harpagoside (10), angoroside C (11), beta-sitosterol (12) and beta-sitosterol glucoside (13) were isolated from the roots of S. ningpoensis. Furthermore, the antimicrobial activity of the extracts of the leaves of S. ningpoensis and the 10 compounds (1, 2, 3, 4, 5, 7, 8, 9, 10, 11) was studied in vitro against eight reference strains of bacteria by using the disc-diffusion method and micro-well dilution assay. The extracts of leaves and scrokoelziside A are effective against beta-haemolytic streptococci but had no effect against other strains. The extract of roots and other compounds showed no activity against all bacterial strains at the test concentration.

  14. Interspecific metabolic diversity of root-colonizing endophytic fungi revealed by enzyme activity tests.

    PubMed

    Knapp, Dániel G; Kovács, Gábor M

    2016-12-01

    Although dark septate endophytes (DSE) represent a worldwide dispersed form group of root-colonizing endophytic fungi, our knowledge on their role in ecosystem functioning is far limited. In this study, we aimed to test if functional diversity exists among DSE fungi representing different lineages of root endophytic fungal community of semiarid sandy grasslands. To address this question and to gain general information on function of DSE fungi, we adopted api-ZYM and BioLog FF assays to study those non-sporulating filamentous fungi and characterized the metabolic activity of 15 different DSE species. Although there were striking differences among the species, all of the substrates tested were utilized by the DSE fungi. When endophytes characteristic to grasses and non-grass host plants were separately considered, we found that the whole substrate repertoire was used by both groups. This might illustrate the complementary functional diversity of the communities root endophytic plant-associated fungi. The broad spectra of substrates utilized by these root endophytes illustrate the functional importance of their diversity, which can play role not only in nutrient mobilization and uptake of plants from with nutrient poor soils, but also in general plant performance and ecosystem functioning.

  15. The initiation of lateral roots in the primary roots of maize (Zea mays L.) implies a reactivation of cell proliferation in a group of founder pericycle cells.

    PubMed

    Alarcón, M Victoria; Lloret, Pedro G; Martín-Partido, Gervasio; Salguero, Julio

    2016-03-15

    The initiation of lateral roots (LRs) has generally been viewed as a reactivation of proliferative activity in pericycle cells that are committed to initiate primordia. However, it is also possible that pericycle founder cells that initiate LRs never cease proliferative activity but rather are displaced to the most distal root zones while undertaking successive stages of LR initiation. In this study, we tested these two alternative hypotheses by examining the incorporation of 5-bromo-2'-deoxyuridine (BrdU) into the DNA of meristematic root cells of Zea mays. According to the values for the length of the cell cycle and values for cell displacement along the maize root, our results strongly suggest that pericycle cells that initiate LR primordia ceased proliferative activity upon exiting the meristematic zone. This finding is supported by the existence of a root zone between 4 and 20mm from the root cap junction, in which neither mitotic cells nor labelled nuclei were observed in phloem pericycle cells.

  16. Acylated flavone glycosides from the roots of Saussurea lappa and their antifungal activity.

    PubMed

    Rao, Kolisetty Sambasiva; Babu, Goriparthi Venu; Ramnareddy, Yemireddy Venkata

    2007-03-07

    The isolation of four novel acylated flavonoid glycosides from the roots of Saussurea lappa and their identification using a combination of 1D and 2D NMR and mass spectrometry is described. The in vitro antifungal and antibacterial activities of the isolated compounds and their mixture were tested on nine fungal and four bacterial strains, using the microdilution method. The compounds and mixture showed moderate to high antifungal activity against most of the fungi tested, compared to a miconazole standard, while only one compound and the mixture showed antibacterial activity against all strains tested.

  17. CHEMICAL COMPOSITION AND ANTIMICROBIAL ACTIVITY OF SOLIDAGO CANADENSIS LINN. ROOT ESSENTIAL OIL

    PubMed Central

    Mishra, Devendra; Joshi, Shivani; Bisht, Ganga; Pilkhwal, Sangeeta

    2010-01-01

    The essential oil from the roots of Solidago canadensis Linn. (fam. Asteraceae) was analyzed by GC, GC/MS and NMR spectroscopy. Thirty nine constituents comprising 75.4% of the total oil were identified from the oil. Thymol constituted 20.25% of the oil followed by α-copaene (6.26%) and carvacrol (5.51%). The antimicrobial activity of the oil was evaluated using disc diffusion method. Results showed that the oil exhibited significant antibacterial activity against S. feacalis and E. coli whereas it showed moderate antifungal activity against C. albicans PMID:24825986

  18. Terpenoids from the roots of Drypetes hoaensis and their cytotoxic activities.

    PubMed

    Wittayalai, Sawangjitt; Mahidol, Chulabhorn; Prachyawarakorn, Vilailak; Prawat, Hunsa; Ruchirawat, Somsak

    2014-03-01

    Seven terpenoids consisting of five sesquiterpenoids, hoaensieremone, hoaensieremodione, hoaensifuranonal, hoaensieudesone, and hoaensibenzofuranal, and two friedelane triterpenoids, 3α-(E)-p-coumaroyloxyfriedelan-7-one and 3α-(E)-caffeoyloxyfriedelan-7-one were isolated from the dichloromethane extract of the roots of Drypetes hoaensis. Additionally, twelve known compounds and vanillin were isolated. Their structures were established on the basis of spectroscopic analysis, as well as by comparison with literature data. The anticancer activity of nine of these compounds was investigated.

  19. Two new Anti-TMV active chalconoid analogues from the root of Phyllanthus emblica.

    PubMed

    Yan, He; Han, Li Rong; Zhang, Xing; Feng, Jun Tao

    2017-01-23

    Two new chalconoid analogues, emblirol A (1) and B (2), along with three known ones (3-5), were isolated from the root of the Phyllanthus emblica L. Their structures were elucidated on the basis of spectral data. Compound 1 and 2 showed moderate anti-TMV activity with inhibition rates 79.6 and 62.1% at a concentration of 1 mg/mL, respectively.

  20. Developmental anatomy and branching of roots of four Zeylanidium species (podostemaceae), with implications for evolution of foliose roots.

    PubMed

    Hiyama, Y; Tsukamoto, I; Imaichi, R; Kato, M

    2002-12-01

    Podostemaceae have markedly specialized and diverse roots that are adapted to extreme habitats, such as seasonally submerged or exposed rocks in waterfalls and rapids. This paper describes the developmental anatomy of roots of four species of Zeylanidium, with emphasis on the unusual association between root branching and root-borne adventitious shoots. In Z. subulatum and Z. lichenoides with subcylindrical or ribbon-like roots, the apical meristem distal (exterior) to a shoot that is initiated within the meristem area reduces and loses meristematic activity. This results in a splitting into two meristems that separate the parental root and lateral root (anisotomous dichotomy). In Z. olivaceum with lobed foliose roots, shoots are initiated in the innermost zone of the marginal meristem, and similar, but delayed, meristem reduction usually occurs, producing a parenchyma exterior to shoots located between root lobes. In some extreme cases, due to meristem recovery, root lobing does not occur, so the margin is entire. In Z. maheshwarii with foliose roots, shoots are initiated proximal to the marginal meristem and there is no shoot-root lobe association. Results suggest that during evolution from subcylindrical or ribbon-like roots to foliose roots, reduction of meristem exterior to a shoot was delayed and then arrested as a result of inward shifting of the sites of shoot initiation. The evolutionary reappearance of a protective tissue or root cap in Z. olivaceum and Z. maheshwarii in the Zeylanidium clade is implied, taking into account the reported molecular phylogeny and root-cap development in Hydrobryum.

  1. The effects of dopamine on antioxidant enzymes activities and reactive oxygen species levels in soybean roots

    PubMed Central

    Gomes, Bruno Ribeiro; Siqueira-Soares, Rita de Cássia; dos Santos, Wanderley Dantas; Marchiosi, Rogério; Soares, Anderson Ricardo; Ferrarese-Filho, Osvaldo

    2014-01-01

    In the current work, we investigated the effects of dopamine, an neurotransmitter found in several plant species on antioxidant enzyme activities and ROS in soybean (Glycine max L. Merrill) roots. The effects of dopamine on SOD, CAT and POD activities, as well as H2O2, O2•−, melanin contents and lipid peroxidation were evaluated. Three-day-old seedlings were cultivated in half-strength Hoagland nutrient solution (pH 6.0), without or with 0.1 to 1.0 mM dopamine, in a growth chamber (25°C, 12 h photoperiod, irradiance of 280 μmol m−2 s−1) for 24 h. Significant increases in melanin content were observed. The levels of ROS and lipid peroxidation decreased at all concentrations of dopamine tested. The SOD activity increased significantly under the action of dopamine, while CT activity was inhibited and POD activity was unaffected. The results suggest a close relationship between a possible antioxidant activity of dopamine and melanin and activation of SOD, reducing the levels of ROS and damage on membranes of soybean roots. PMID:25482756

  2. Activating transcription factor 3, a useful marker for regenerative response after nerve root injury.

    PubMed

    Lindå, Hans; Sköld, Mattias K; Ochsmann, Thomas

    2011-01-01

    Activating transcription factor 3 (ATF3) is induced in various tissues in response to stress. In this experiment, ATF3 expression was studied in adult rats subjected either to a dorsal or ventral root avulsion (VRA; L4-6), or sciatic nerve transection (SNT). Post-operative survival times varied between 1.5 h and 3 weeks. In additional experiments an avulsed ventral root was directly replanted to the spinal cord. Dorsal root ganglias (DRGs) from humans exposed to traumatic dorsal root avulsions were also examined. After SNT ATF3 immunoreactivity (ATF3 IR) was detected in a few DRG neurons already 6 h after the lesion. After 24 h the number had clearly increased and still at 3 weeks DRG neurons remained labeled. In the ventral horn, ATF3 IR in motoneurons (MN) was first detected 24 h after the SNT, and still 3 weeks post-operatively lesioned MN showed ATF3 labeling. After a VRA many spinal MN showed ATF3 IR already after 3 h, and after 6 h all MN were labeled. At 3 weeks a majority of the lesioned MN had died, but all the remaining ones were labeled. When an avulsed ventral root was directly replanted, MN survived and were still labeled at 5 weeks. In DRG, a few neurons were labeled already at 1.5 h after a dorsal root avulsion. At 24 h the number had increased but still only a minority of the neurons were labeled. At 3 days the number of labeled neurons was reduced, and a further reduction was at hand at 7 days and 3 weeks. In parallel, in humans, 3 days after a traumatic dorsal root avulsion, only a few DRG neurons showed ATF3 IR. At 6 weeks no labeled neurons could be detected. These facts imply that ATF3 response to axotomy involves a distance-dependent mechanism. ATF3 also appears to be a useful and reliable neuronal marker of nerve lesions even in humans. In addition, ATF3 up-regulation in both motor and sensory neurons seems to be linked to regenerative competence.

  3. 34 CFR 299.3 - What priority may the Secretary establish for activities in an Empowerment Zone or Enterprise...

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... activities in an Empowerment Zone or Enterprise Community? 299.3 Section 299.3 Education Regulations of the... activities in an Empowerment Zone or Enterprise Community? For any ESEA discretionary grant program, the... significant portion of the program funds to address substantial problems in an Empowerment Zone, including...

  4. Geomorphic Indices in the Assessment of Tectonic Activity in Forearc of the Active Mexican Subduction Zone

    NASA Astrophysics Data System (ADS)

    Gaidzik, K.; Ramirez-Herrera, M. T.

    2015-12-01

    Rapid development of GIS techniques and constant advancement of digital elevation models significantly improved the accuracy of extraction of information on active tectonics from landscape features. Numerous attempts were made to quantitatively evaluate recent tectonic activity using GIS and DEMs, and a set of geomorphic indices (GI), however these studies focused mainly on sub-basins or small-scale areal units. In forearc regions where crustal deformation is usually large-scale and do not concentrate only along one specific fault, an assessment of the complete basin is more accurate. We present here the first attempt to implement thirteen GI in the assessment of active tectonics of a forearc region of an active convergent margin using the entire river basins. The GIs were divided into groups: BTAI - basin geomorphic indices (reflecting areal erosion vs. tectonics) and STAI - stream geomorphic indices (reflecting vertical erosion vs. tectonics). We calculated selected indices for 9 large (> 450 km2) drainage basins. Then we categorized the obtained results of each index into three classes of relative tectonic activity: 1 - high, 2 - moderate, and 3 - low. Finally we averaged these classes for each basin to determine the tectonic activity level (TAI). The analysis for the case study area, the Guerrero sector at the Mexican subduction zone, revealed high tectonic activity in this area, particularly in its central and, to a lesser degree, eastern part. This pattern agrees with and is supported by interpretation of satellite images and DEM, and field observations. The results proved that the proposed approach indeed allows identification and recognition of areas witnessing recent tectonic deformation. Moreover, our results indicated that, even though no large earthquake has been recorded in this sector for more than 100 years, the area is highly active and may represent a seismic hazard for the region.

  5. Detection of a plant enzyme exhibiting chlorogenate-dependant caffeoyltransferase activity in methanolic extracts of arbuscular mycorrhizal tomato roots.

    PubMed

    Negrel, Jonathan; Javelle, Francine; Morandi, Dominique

    2013-05-01

    When Glomus intraradices-colonised tomato roots were extracted in methanol at 6 °C, chlorogenic acid (5-caffeoylquinic acid), naturally present in the extract, was slowly converted by transesterification into methyl caffeate. The progress of the reaction could be monitored by HPLC. The reaction only occurred when the ground roots were left in contact with the hydro-alcoholic extract and required the presence of 15-35% water in the mixture. When the roots were extracted in ethanol, chlorogenic acid was transformed to ethyl caffeate in the same conditions. The reaction was also detected in Glomus mosseae-colonised tomato root extracts. It was also detectable in non-mycorrhizal root extracts but was 10-25 times slower. By contrast it was undetectable in extracts of the aerial parts of tomato plants, which also contain high amounts of chlorogenic acid, whether or not these plants were inoculated by the arbuscular mycorrhizal fungus. We found that this transesterification reaction is catalysed by a tomato enzyme, which remains active in hydro-alcoholic mixtures and exhibits chlorogenate-dependant caffeoyltransferase activity in the presence of methanol or ethanol. This transferase activity is inhibited by phenylmethanesulfonyl fluoride. The 4- and 3-caffeoylquinic acid isomers were also used as substrates but were less active than chlorogenic acid. Highest activity was detected in mycorrhizal roots of nutrient-deprived tomato plants. Surprisingly this caffeoyltransferase activity could also be detected in hydro-alcoholic extracts of G. intraradices-colonised roots of leek, sorghum or barrel medic.

  6. Latent nitrate reductase activity is associated with the plasma membrane of corn roots

    NASA Technical Reports Server (NTRS)

    Ward, M. R.; Grimes, H. D.; Huffaker, R. C.

    1989-01-01

    Latent nitrate reductase activity (NRA) was detected in corn (Zea mays L., Golden Jubilee) root microsome fractions. Microsome-associated NRA was stimulated up to 20-fold by Triton X-100 (octylphenoxy polyethoxyethanol) whereas soluble NRA was only increased up to 1.2-fold. Microsome-associated NRA represented up to 19% of the total root NRA. Analysis of microsomal fractions by aqueous two-phase partitioning showed that the membrane-associated NRA was localized in the second upper phase (U2). Analysis with marker enzymes indicated that the U2 fraction was plasma membrane (PM). The PM-associated NRA was not removed by washing vesicles with up to 1.0 M NACl but was solubilized from the PM with 0.05% Triton X-100. In contrast, vanadate-sensitive ATPase activity was not solubilized from the PM by treatment with 0.1% Triton X-100. The results show that a protein capable of reducing nitrate is embedded in the hydrophobic region of the PM of corn roots.

  7. A biologically active fructan from the roots of Arctium lappa L., var. Herkules.

    PubMed

    Kardosová, A; Ebringerová, A; Alföldi, J; Nosál'ová, G; Franová, S; Hríbalová, V

    2003-11-01

    From the roots of Arctium lappa L., var. Herkules a low-molecular-weight fructofuranan of the inulin-type has been isolated by water extraction and ethanol precipitation, followed by ion-exchange chromatography and gel filtration of the crude precipitate. The methods employed in structural determination were methylation analysis and 1H and 13C NMR spectral measurements. In tests for antitussive activity in cats the fructan was found to be equally active as some non-narcotic, synthetic preparations used in clinical practice to treat coughing, and in mitogenic and comitogenic tests its biological response was comparable to that of the commercial Zymosan immunomodulator.

  8. Flavonoids with anti-HSV activity from the root bark of Artocarpus lakoocha.

    PubMed

    Sritularak, Boonchoo; Tantrakarnsakul, Kullasap; Lipipun, Vimolmas; Likhitwitayawuid, Kittisak

    2013-08-01

    From the MeOH extract of the root bark of Artocarpus lakoocha, a new compound 5,7,2',4'-tetrahydroxy-6-geranyl-3-prenyl-flavone (1) was isolated, along with three known flavonoids (+)-afzelechin-3-O-alpha-L-rhamnopyranoside (2), (+)-catechin (3) and cudraflavone C (4). Evaluation of these isolates for inhibitory effects against Herpes simplex virus (HSV) types 1 and 2 was carried out using the inactivation method. Compounds 1 and 4 showed moderate and weak activity against both types of HSV, respectively, whereas 2 and 3 were devoid of activity.

  9. Isolation of major components from the roots of Godmania aesculifolia and determination of their antifungal activities.

    PubMed

    Tamayo-Castillo, Giselle; Vásquez, Víctor; Ríos, María Isabel; Rodríguez, María Victoria; Solano, Godofredo; Zacchino, Susana; Gupta, Mahabir P

    2013-12-01

    From the methanol root extract of Godmania aesculifolia, a species selected in a multinational OAS program aimed at discovering antifungal compounds from Latin American plants, a new chavicol diglycoside (1), the known 3,4-dihydroxy-2-(3-methylbut-2-en-1-yl)-3,4-dihydronaphthalen-1(2H)-one (2), and lapachol (3) were isolated and characterized by 1D and 2D NMR and MS techniques. Only 3 exhibited fairly good activity against a panel of clinical isolates of Cryptococcus neoformans (MIC50 between 7.8 and 31.2 µg/mL) and moderate activities against Candida spp. and non-albicans Candida spp.

  10. Effect of phosphoric fertilizer and starter rates of nitrogen fertilizers on the phosphatase activity in the rhizosphere soil and nonlignified soybean roots under drought conditions

    NASA Astrophysics Data System (ADS)

    Emnova, E. E.; Daraban, O. V.; Bizgan, I. V.; Toma, S. I.

    2014-02-01

    In a small-plot field experiment, two soybean ( Glycine max L.) cultivars were grown on a calcareous chernozem under the drought conditions of 2012 with the preplanting application of simple superphosphate (Ps) at 60 kg/ha, urea (Nu) at 10 and 20 kg/ha, and ammonium nitrate (Nan) at 20 kg/ha. The phosphatase activity was measured in the rhizosphere soil (0- to 20-cm layer) and the fine nonlignified roots of soybean plants at the blossoming and pod-formation stages (the soil water content was 19 and 33% of the total water capacity, respectively). The maximum content of available phosphorus in the rhizosphere of both soybean cultivars (4.3-4.8 mg/100 g dry soil) was found at the simultaneous application of Ps and Nu20. Higher activities of the predominant phosphatases (alkaline phosphatase in the rhizosphere and acid phosphatase in the roots) were observed in the root-inhabited zone of the soil under the Indra cultivar compared to the Aura cultivar, which correlated with the lower content of available phosphorus in the rhizosphere soil (especially at the simultaneous application of Ps and Nu20) and the higher productivity of this cultivar in this treatment.

  11. The main constituents of Tulipa systola Stapf. roots and flowers; their antioxidant activities.

    PubMed

    Ibrahim, Mohammed Farhad; Hussain, Faiq Hama Saeed; Zanoni, Giuseppe; Vidari, Giovanni

    2016-12-28

    People living on the mountains of the Kurdistan Region, Iraq make a large use of herbs in the local traditional medicine. Among them, Tulipa systola, which grows under and between rocks, is very popular as an anti-inflammatory remedy and pain-relief. The phytochemical study of an ethanolic extract obtained from flowers and roots of Tulip (T systola Stapf.) afforded three compounds, identified as (+)-1-O-E-feruloyl-3-O-E-p-coumaroylglycerol (1), (+)-6-tuliposide A (2), and (-)-kaempferol-3-O-rutinoside (3). The significant radical scavenging and antioxidant activity of the isolated compounds were evaluated on three tests, by determining the DPPH free radical scavenging activity, the total antioxidant activity and the hydrogen peroxide scavenging activity. Tuliposide A shows potent allergenic activity.

  12. Concentric zones of active RhoA and Cdc42 around single cell wounds

    PubMed Central

    Benink, Hélène A.; Bement, William M.

    2005-01-01

    Rho GTPases control many cytoskeleton-dependent processes, but how they regulate spatially distinct features of cytoskeletal function within a single cell is poorly understood. Here, we studied active RhoA and Cdc42 in wounded Xenopus oocytes, which assemble and close a dynamic ring of actin filaments (F-actin) and myosin-2 around wound sites. RhoA and Cdc42 are rapidly activated around wound sites in a calcium-dependent manner and segregate into distinct, concentric zones around the wound, with active Cdc42 in the approximate middle of the F-actin array and active RhoA on the interior of the array. These zones form before F-actin accumulation, and then move in concert with the closing array. Microtubules and F-actin are required for normal zone organization and dynamics, as is crosstalk between RhoA and Cdc42. Each of the zones makes distinct contributions to the organization and function of the actomyosin wound array. We propose that similar rho activity zones control related processes such as cytokinesis. PMID:15684032

  13. Crustal root beneath the Rif Cordillera as imaged from both active seismic data and teleseismic receiver functions.

    NASA Astrophysics Data System (ADS)

    Diaz, Jordi; Gil, Alba; Gallart, Josep; Carbonell, Ramon; Harnafi, Mimoun; Levander, Alan

    2015-04-01

    The Rif cordillera forms, together with the Betic ranges, one of the tightest orogenic arcs on Earth. This continental boundary zone is dominated now by the slow convergence between Nubia and Eurasia, but with clear evidences of extensional tectonics. One of the missing elements to constrain the complex geodynamics of the Gibraltar Arc System is the knowledge of the crustal architecture beneath northern Morocco. In the last decade a major effort has been done in this sense, from active and passive seismics. We compile here the recent results available from the Rif domains. Two 330 km long wide angle DSS profiles were recorded end of 2011 across the Rif in NS and EW transects within the Rifsis project, complemented by onshore recordings of the Gassis-WestMed marine profiles. At the same period, BB seismic arrays were deployed in the area within Topo-Iberia and Picasso projects, allowing receiver function analyses of crustal depths. The ray-tracing modeling of the Rifsis profiles reveal a large Moho step and an area of crustal thickening both in EW and NS directions, grossly coincident with the Bouguer gravity anomalies. The deployment logistics allowed that all the stations recorded all the shots, thus providing useful offline data. We will use here all available in-line and offline data to provide a map of the crustal thickness in northern Morocco. We combined two approaches: i) a hyperbolic time reduction applied to the seismic data, resulting in low-fold stacks in which the reflections from the Moho should appear as subhorizontal lines; ii) the arrival times of the observed PmP phases allow, assuming a mean crustal velocity, to assign a midpoint crustal thickness to each lecture. Although some uncertainties may be inherent to those approaches, a large crustal root, reaching more than 50 km, is well documented in the central part of the Rif Cordillera, close to the zone where the Alboran slab may still be attached to the lithosphere. We also compared these results

  14. A new algorithm for computational image analysis of deformable motion at high spatial and temporal resolution applied to root growth. Roughly uniform elongation in the meristem and also, after an abrupt acceleration, in the elongation zone.

    PubMed

    van der Weele, Corine M; Jiang, Hai S; Palaniappan, Krishnan K; Ivanov, Viktor B; Palaniappan, Kannapan; Baskin, Tobias I

    2003-07-01

    A requirement for understanding morphogenesis is being able to quantify expansion at the cellular scale. Here, we present new software (RootflowRT) for measuring the expansion profile of a growing root at high spatial and temporal resolution. The software implements an image processing algorithm using a novel combination of optical flow methods for deformable motion. The algorithm operates on a stack of nine images with a given time interval between each (usually 10 s) and quantifies velocity confidently at most pixels of the image. The root does not need to be marked. The software calculates components of motion parallel and perpendicular to the local tangent of the root's midline. A variation of the software has been developed that reports the overall root growth rate versus time. Using this software, we find that the growth zone of the root can be divided into two distinct regions, an apical region where the rate of motion, i.e. velocity, rises gradually with position and a subapical region where velocity rises steeply with position. In both zones, velocity increases almost linearly with position, and the transition between zones is abrupt. We observed this pattern for roots of Arabidopsis, tomato (Lycopersicon lycopersicum), lettuce (Lactuca sativa), alyssum (Aurinia saxatilis), and timothy (Phleum pratense). These velocity profiles imply that relative elongation rate is regulated in a step-wise fashion, being low but roughly uniform within the meristem and then becoming high, but again roughly uniform, within the zone of elongation. The executable code for RootflowRT is available from the corresponding author on request.

  15. A New Algorithm for Computational Image Analysis of Deformable Motion at High Spatial and Temporal Resolution Applied to Root Growth. Roughly Uniform Elongation in the Meristem and Also, after an Abrupt Acceleration, in the Elongation Zone1

    PubMed Central

    van der Weele, Corine M.; Jiang, Hai S.; Palaniappan, Krishnan K.; Ivanov, Viktor B.; Palaniappan, Kannapan; Baskin, Tobias I.

    2003-01-01

    A requirement for understanding morphogenesis is being able to quantify expansion at the cellular scale. Here, we present new software (RootflowRT) for measuring the expansion profile of a growing root at high spatial and temporal resolution. The software implements an image processing algorithm using a novel combination of optical flow methods for deformable motion. The algorithm operates on a stack of nine images with a given time interval between each (usually 10 s) and quantifies velocity confidently at most pixels of the image. The root does not need to be marked. The software calculates components of motion parallel and perpendicular to the local tangent of the root's midline. A variation of the software has been developed that reports the overall root growth rate versus time. Using this software, we find that the growth zone of the root can be divided into two distinct regions, an apical region where the rate of motion, i.e. velocity, rises gradually with position and a subapical region where velocity rises steeply with position. In both zones, velocity increases almost linearly with position, and the transition between zones is abrupt. We observed this pattern for roots of Arabidopsis, tomato (Lycopersicon lycopersicum), lettuce (Lactuca sativa), alyssum (Aurinia saxatilis), and timothy (Phleum pratense). These velocity profiles imply that relative elongation rate is regulated in a step-wise fashion, being low but roughly uniform within the meristem and then becoming high, but again roughly uniform, within the zone of elongation. The executable code for RootflowRT is available from the corresponding author on request. PMID:12857796

  16. Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes

    PubMed Central

    Marahatta, Sharadchandra P.; Wang, Koon-Hui; Sipes, Brent S.; Hooks, Cerruti R. R.

    2012-01-01

    Although marigold (Tagetes patula) is known to produce allelopathic compounds toxic to plant-parasitic nematodes, suppression of Meloidogyne incognita can be inconsistent. Two greenhouse experiments were conducted to test whether marigold is more effective in suppressing Meloidogyne spp. when it is active rather than dormant. Soils infested with Meloidogyne spp. were collected and conditioned in the greenhouse either by 1) keeping the soil dry (DRY), 2) irrigating with water (IRR), or 3) drenching with cucumber (Cucumis sativus) leachate (CL) for 5 wk. These soils were then either planted with cucumber, marigold or remained bare for 10 wk. Suppression of nematode by marigold was then assayed using cucumber. DRY conditioning resulted in the highest number of inactive nematodes, whereas CL and IRR had higher numbers of active nematodes than DRY. At the end of the cucumber bioassay, marigold suppressed the numbers of Meloidogyne females in cucumber roots if the soil was conditioned in IRR or CL, but not in DRY. However, in separate laboratory assays, marigold root leachate slightly reduced M. incognita J2 activity but did not reduce egg hatch (P > 0.05). These finding suggest that marigold can only suppress Meloidogyne spp. when marigold is actively growing. This further suggests that marigold will more efficiently suppress Meloidogyne spp. if planted when these nematodes are in active stage. PMID:23482862

  17. Antimalarial activity of fractions of aqueous extract of Acacia nilotica root

    PubMed Central

    Alli, Lukman Adewale; Adesokan, Abdulfatai Ayoade; Salawu, Adeola Oluwakanyinsola

    2016-01-01

    Background: The problem of resistance of malarial parasites to available antimalarial drugs makes the development of new drugs imperative, with natural plant products providing an alternative source for discovering new drugs. Aim: To evaluate the antimalarial activity of eluted fractions of Acacia nilotica root extract and determine the phytochemicals responsible for its antimalarial activity. Materials and Methods: The extract was eluted successively in gradients of solvent mixture (hexane, ethyl acetate, and methanol) in multiples of 100 ml, and each fraction was collected separately. Eluates that showed similar thin layer chromatographic profiles and Rf values were combined to produce 4 main fractions (F-1, F-2, F-3, and F-4), which were tested separately for antimalarial activity using the curative test. Changes in body weight, temperature, and packed cell volume (PCV) were also recorded. Results: Fraction F-1 of A. nilotica at 50 and 100 mg/kg b/w produced significant and dose-dependent reduction in parasite count in Plasmodium berghei infected mice compared to the control, and also significantly increased the survival time of the mice compared to the control group. This fraction also ameliorated the malaria-induced anemia by improving PCV in treated mice. Conclusion: Antimalarial activity of extract of A. nilotica root is probably localized in the F-1 fraction of the extract, which was found to be rich in alkaloids and phenolics. Further study will provide information on the chemical properties of the active metabolites in this fraction. PMID:27104040

  18. Delineation of Active Basement Faults in the Eastern Tennessee and Charlevoix Intraplate Seismic Zones

    NASA Astrophysics Data System (ADS)

    Powell, C. A.; Langston, C. A.; Cooley, M.

    2013-12-01

    Recognition of distinct, seismogenic basement faults within the eastern Tennessee seismic zone (ETSZ) and the Charlevoix seismic zone (CSZ) is now possible using local earthquake tomography and datasets containing a sufficiently large number of earthquakes. Unlike the New Madrid seismic zone where seismicity clearly defines active fault segments, earthquake activity in the ETSZ and CSZ appears diffuse. New arrival time inversions for hypocenter relocations and 3-D velocity variations using datasets in excess of 1000 earthquakes suggest the presence of distinct basement faults in both seismic zones. In the ETSZ, relocated hypocenters align in near-vertical segments trending NE-SW, parallel to the long dimension of the seismic zone. Earthquakes in the most seismogenic portion of the ETSZ delineate another set of near-vertical faults trending roughly E-ESE. These apparent trends and steep dips are compatible with ETSZ focal mechanism solutions. The solutions are remarkably consistent and indicate strike-slip motion along the entire length of the seismic zone. Relocated hypocenter clusters in the CSZ define planes that trend and dip in directions that are compatible with known Iapitan rift faults. Seismicity defining the planes becomes disrupted where the rift faults encounter a major zone of deformation produced by a Devonian meteor impact. We will perform a joint statistical analysis of hypocenter alignments and focal mechanism nodal plane orientations in the ETSZ and the CSZ to determine the spatial orientations of dominant seismogenic basement faults. Quantifying the locations and dimensions of active basement faults will be important for seismic hazard assessment and for models addressing the driving mechanisms for these intraplate zones.

  19. Low resistivity and permeability in actively deforming shear zones on the San Andreas Fault at SAFOD

    USGS Publications Warehouse

    Morrow, Carolyn A.; Lockner, David A.; Hickman, Stephen H.

    2015-01-01

    The San Andreas Fault Observatory at Depth (SAFOD) scientific drillhole near Parkfield, California crosses the San Andreas Fault at a depth of 2.7 km. Downhole measurements and analysis of core retrieved from Phase 3 drilling reveal two narrow, actively deforming zones of smectite-clay gouge within a roughly 200 m-wide fault damage zone of sandstones, siltstones and mudstones. Here we report electrical resistivity and permeability measurements on core samples from all of these structural units at effective confining pressures up to 120 MPa. Electrical resistivity (~10 ohm-m) and permeability (10-21 to 10-22 m2) in the actively deforming zones were one to two orders of magnitude lower than the surrounding damage zone material, consistent with broader-scale observations from the downhole resistivity and seismic velocity logs. The higher porosity of the clay gouge, 2 to 8 times greater than that in the damage zone rocks, along with surface conduction were the principal factors contributing to the observed low resistivities. The high percentage of fine-grained clay in the deforming zones also greatly reduced permeability to values low enough to create a barrier to fluid flow across the fault. Together, resistivity and permeability data can be used to assess the hydrogeologic characteristics of the fault, key to understanding fault structure and strength. The low resistivities and strength measurements of the SAFOD core are consistent with observations of low resistivity clays that are often found in the principal slip zones of other active faults making resistivity logs a valuable tool for identifying these zones.

  20. Differential impact of low temperature on fatty acid unsaturation and lipoxygenase activity in figleaf gourd and cucumber roots.

    PubMed

    Lee, Seong Hee; Ahn, Sung Ju; Im, Yang Ju; Cho, Kyoungwon; Chung, Gap-Chae; Cho, Baik-Ho; Han, Oksoo

    2005-05-20

    Previous studies show that low temperature strongly induces suberin layers in the roots of chilling-sensitive cucumber plants, while in contrast, low temperature produces a much weaker induction of suberin layers in the roots of the chilling-tolerant figleaf gourd [S.H. Lee, G.C. Chung, S. Steudle, Gating of aquaporins by low temperature in roots of chilling-sensitive cucumber and -tolerant figleaf gourd, J. Exp. Bot. 56 (2005) 985-995; S.H. Lee, G.C. Chung, E. Steudle, Low temperature and mechanical stresses differently gate aquaporins of root cortical cells of chilling-sensitive cucumber and figleaf gourd, Plant Cell Environ. (2005) in press; S.J. Ahn, Y.J. Im, G.C. Chung, B.H. Cho, S.R. Suh, Physiological responses of grafted-cucumber leaves and rootstock roots affected by low root temperature, Scientia Hort. 81 (1999) 397-408]. Here, the effect of low temperature on fatty acid unsaturation and lipoxygenase activity was examined in cucumber and figleaf gourd. The double bond index demonstrated that membrane lipid unsaturation shows hyperbolic saturation curve in figleaf gourd roots while a biphasic response in cucumber roots to low temperature. In figleaf gourd, the hyperbolic response in the double bond index was primarily due to accumulation of linolenic acid. Chilling stress also significantly induced lipoxygenase activity in figleaf gourd roots. These results suggest that the degree of unsaturation of root plasma membrane lipids correlates positively with chilling-tolerance. Therefore, studies that compare the effects of chilling on cucumber and figleaf gourd may provide broad insight into stress response mechanisms in chilling-sensitive and chilling-tolerant plants. Furthermore, these studies may provide important information regarding the relationship between lipid unsaturation and lipoxygenase function/activity, and between lipoxygenase activity and water channeling during the response to chilling stress. The possible roles of these processes in chilling

  1. Diffusion Limitation of Oxygen Uptake and Nitrogenase Activity in the Root Nodules of Parasponia rigida Merr. and Perry 1

    PubMed Central

    Tjepkema, John D.; Cartica, Robert J.

    1982-01-01

    Parasponia is the first non-legume genus proven to form nitrogen-fixing root nodules induced by rhizobia. Infiltration with India ink demonstrated that intercellular air spaces are lacking in the inner layers of the nodule cortex. Oxygen must diffuse through these layers to reach the cells containing the rhizobia, and it was calculated that most of the gradient in O2 partial pressure between the atmosphere and rhizobia occurs at the inner cortex. This was confirmed by O2 microelectrode measurements which showed that the O2 partial pressure was much lower in the zone of infected cells than in the cortex. Measurements of nitrogenase activity and O2 uptake as a function of temperature and partial pressure of O2 were consistent with diffusion limitation of O2 uptake by the inner cortex. In spite of the presumed absence of leghemoglobin in nodules of Parasponia rigida Merr. and Perry, energy usage for nitrogen fixation was similar to that in legume nodules. The results demonstrate that O2 regulation in legume and Parasponia nodules is very similar and differs from O2 regulation in actionorhizal nodules. Images PMID:16662284

  2. Halogens and noble gases in Mathematician Ridge meta-gabbros, NE Pacific: implications for oceanic hydrothermal root zones and global volatile cycles

    NASA Astrophysics Data System (ADS)

    Kendrick, Mark A.; Honda, Masahiko; Vanko, David A.

    2015-12-01

    Six variably amphibolitised meta-gabbros cut by quartz-epidote veins containing high-salinity brine, and vapour fluid inclusions were investigated for halogen (Cl, Br, I) and noble gas (He, Ne, Ar, Kr, Xe) concentrations. The primary aims were to investigate fluid sources and interactions in hydrothermal root zones and determine the concentrations and behaviours of these elements in altered oceanic crust, which is poorly known, but has important implications for global volatile (re)cycling. Amphiboles in each sample have average concentrations of 0.1-0.5 wt% Cl, 0.5-3 ppm Br and 5-68 ppb I. Amphibole has Br/Cl of ~0.0004 that is about ten times lower than coexisting fluid inclusions and seawater, and I/Cl of 2-44 × 10-6 that is 3-5 times lower than coexisting fluid inclusions but higher than seawater. The amphibole and fluid compositions are attributed to mixing halogens introduced by seawater with a large halogen component remobilised from mafic lithologies in the crust and fractionation of halogens between fluids and metamorphic amphibole formed at low water-rock ratios. The metamorphic amphibole and hydrothermal quartz are dominated by seawater-derived atmospheric Ne, Ar, Kr and Xe and mantle-derived He, with 3He/4He of ~9 R/Ra (Ra = atmospheric ratio). The amphibole and quartz preserve high 4He concentrations that are similar to MORB glasses and have noble gas abundance ratios with high 4He/36Ar and 22Ne/36Ar that are greater than seawater and air. These characteristics result from the high solubility of light noble gases in amphibole and suggest that all the noble gases can behave similarly to `excess 40Ar' in metamorphic hydrothermal root zones. All noble gases are therefore trapped in hydrous minerals to some extent and can be inefficiently lost during metamorphism implying that even the lightest noble gases (He and Ne) can potentially be subducted into the Earth's mantle.

  3. Effect of lipid/polysaccharide ratio on surface activity of model root mucilage in its solid and liquid states

    NASA Astrophysics Data System (ADS)

    Chen, Fengxian; Arye, Gilboa

    2016-04-01

    The rhizosphere can be defined as the volume of soil around living roots, which is influenced by root activity. The biological, chemical and physical conditions that prevail in the rhizosphere are significantly different from those of the bulk soil. Plant roots can release diverse organic materials in the rhizosphere which may have different effects on its bio-chemo-physical activity. Among these exudates is the root mucilage which can play a role on the maintenance of root-soil contact, lubrication of the root tip, protection of roots from desiccation and disease, stabilization of soil micro-aggregates and the selective absorption and storage of ions. The surface activity of the root mucilage at the liquid-air interface deduced from its surface tension depression relative to water, implying on its amphiphilic nature. Consequently as the rhizosphere dry out, hydrophobic functional groups may exhibit orientation at the solid-air interface and thus, the wettability of the rhizosphere may temporarily decrease. The major fraction of the root mucilage comprise of polysaccharides and to a much lesser extent, amino acids, organic acids, and phospholipids. The most frequent polysaccharide and phospholipids detected in root mucilage are polygalacturonic acid (PGA) and Phosphatidylcholine (PC), respectively. The latter, is thought to be main cause for the surface active nature of root mucilage. Nevertheless, the role and function of root mucilage in the rhizosphere is commonly studied based on model root mucilage that comprise of only one component, where the most frequent ones are PGA or PC (or lecithin). The main objective of this study was to quantify the effect of concentration and PGA/PC ratios on the wettability of a model rhizosphere soil and the surface tension of the model root mucilage at the liquid-air interface. The PGA/PC mixtures were measured for their equilibrium and dynamic surface tension using the Wilhelmy-Plate method. Quartz sand or glass slides were

  4. The effects of exogenous hormones on rooting process and the activities of key enzymes of Malus hupehensis stem cuttings

    PubMed Central

    Tan, Qianqian; Zhao, Mingming; Zhou, Ting; Cao, Fuliang

    2017-01-01

    Malus hupehensis is an excellent Malus rootstock species, known for its strong adverse-resistance and apomixes. In the present study, stem cuttings of M. hupehensis were treated with three types of exogenous hormones, including indole acetic acid (IAA), naphthalene acetic acid (NAA), or green growth regulator (GGR). The effects and mechanisms of exogenous hormone treatment and antioxidant enzyme activity on adventitious root formation were investigated. The results showed that the apparent morphology of the adventitious root had four stages, including root pre-emergence stage (S0), early stage of root formation (S1), massive root formation stage (S2), and later stage of root formation (S3). The suitable concentrations of the three exogenous hormones, IAA, NAA and GGR, were 100 mg·L-1, 300 mg·L-1, and 300 mg·L-1, respectively. They shortened the rooting time by 25–47.4% and increased the rooting percentages of cuttings by 0.9–1.3 times, compared with that in the control. The dispersion in S0 stage was 3.6 times of that in the S1 stage after exogenous hormone application. The earlier the third critical point (P3) appeared, the shorter the rooting time and the greater the rooting percentage of the cuttings. During rhizogenesis, the activities of three antioxidant enzymes (POD, SOD, and PPO) showed an A-shaped trend. However, peak values of enzyme activity appeared at different points, which were 9 d before the P3, P3, and the fourth critical point (P4), respectively. Exogenous hormone treatment reduced the time to reach the peak value by 18 days, although the peak values of the enzymatic activities did not significantly changed. Our results suggested that exogenous hormone treatment mainly acted during the root pre-emergence stage, accelerated the synthesis of antioxidant enzymes, reduced the rooting time, and consequently promoted root formation. The three kinds of antioxidant enzymes acted on different stages of rooting. PMID:28231330

  5. Genetic and chemical reductions in protein phosphatase activity alter auxin transport, gravity response, and lateral root growth

    NASA Technical Reports Server (NTRS)

    Rashotte, A. M.; DeLong, A.; Muday, G. K.; Brown, C. S. (Principal Investigator)

    2001-01-01

    Auxin transport is required for important growth and developmental processes in plants, including gravity response and lateral root growth. Several lines of evidence suggest that reversible protein phosphorylation regulates auxin transport. Arabidopsis rcn1 mutant seedlings exhibit reduced protein phosphatase 2A activity and defects in differential cell elongation. Here we report that reduced phosphatase activity alters auxin transport and dependent physiological processes in the seedling root. Root basipetal transport was increased in rcn1 or phosphatase inhibitor-treated seedlings but showed normal sensitivity to the auxin transport inhibitor naphthylphthalamic acid (NPA). Phosphatase inhibition reduced root gravity response and delayed the establishment of differential auxin-induced gene expression across a gravity-stimulated root tip. An NPA treatment that reduced basipetal transport in rcn1 and cantharidin-treated wild-type plants also restored a normal gravity response and asymmetric auxin-induced gene expression, indicating that increased basipetal auxin transport impedes gravitropism. Increased auxin transport in rcn1 or phosphatase inhibitor-treated seedlings did not require the AGR1/EIR1/PIN2/WAV6 or AUX1 gene products. In contrast to basipetal transport, root acropetal transport was normal in phosphatase-inhibited seedlings in the absence of NPA, although it showed reduced NPA sensitivity. Lateral root growth also exhibited reduced NPA sensitivity in rcn1 seedlings, consistent with acropetal transport controlling lateral root growth. These results support the role of protein phosphorylation in regulating auxin transport and suggest that the acropetal and basipetal auxin transport streams are differentially regulated.

  6. Promise for plant pest control: root-associated pseudomonads with insecticidal activities

    PubMed Central

    Kupferschmied, Peter; Maurhofer, Monika; Keel, Christoph

    2013-01-01

    Insects are an important and probably the most challenging pest to control in agriculture, in particular when they feed on belowground parts of plants. The application of synthetic pesticides is problematic owing to side effects on the environment, concerns for public health and the rapid development of resistance. Entomopathogenic bacteria, notably Bacillus thuringiensis and Photorhabdus/Xenorhabdus species, are promising alternatives to chemical insecticides, for they are able to efficiently kill insects and are considered to be environmentally sound and harmless to mammals. However, they have the handicap of showing limited environmental persistence or of depending on a nematode vector for insect infection. Intriguingly, certain strains of plant root-colonizing Pseudomonas bacteria display insect pathogenicity and thus could be formulated to extend the present range of bioinsecticides for protection of plants against root-feeding insects. These entomopathogenic pseudomonads belong to a group of plant-beneficial rhizobacteria that have the remarkable ability to suppress soil-borne plant pathogens, promote plant growth, and induce systemic plant defenses. Here we review for the first time the current knowledge about the occurrence and the molecular basis of insecticidal activity in pseudomonads with an emphasis on plant-beneficial and prominent pathogenic species. We discuss how this fascinating Pseudomonas trait may be exploited for novel root-based approaches to insect control in an integrated pest management framework. PMID:23914197

  7. Anti-hepatoma activities of ethyl acetate extract from Ampelopsis sinica root.

    PubMed

    Wang, Jia-Zhi; Huang, Bi-Sheng; Cao, Yan; Chen, Ke-Li; Li, Juan

    2017-03-13

    Ampelopsis sinica root (ASR) is a known hepatoprotective folk traditional Chinese medicine. The anti‑hepatoma activity of ethyl acetate extract from A. sinica root (ASRE) in vitro and in vivo and its possible mechanism were explored. This study was designed to investigate cytotoxicity by MTT assay, induction of apoptosis via Hoechst 33258 staining, scanning electron microscopy and bivariate flow cytometric analysis (Annexin V-FITC/PI), inflammation and apoptosis related genes expression by RT-PCR and p53 protein expression by immunofluorescence assay in HepG2 cells. Then, the antitumor activity in vivo was detected by hepatoma H22 xenograft tumor in mice. The results showed that ASRE had powerful anti‑hepatoma activity in vitro without obvious toxicity on normal cells and could induce HepG2 cell apoptosis. The mechanism may be associated with downregulation of inflammatory cytokines including cyclooxygenase-2, 5-lipoxygenase and FLAP, increase of the ratio of bax/bcl-2, activation caspase-3 and inhibition of survivin, and increased expression of p53 protein. Furthermore, the HPLC assay showed the main compounds of ASRE were gallic acid, catechin and gallic acid ethyl ester. In animal experiments, ASR ethanol extract decreased the tumor weights of hepatoma H22 tumor-bearing mice. Therefore, ASR may be a potential therapeutic agent in the treatment of hepatocellular carcinoma.

  8. Changes of Cyanide Content and Linamarase Activity in Wounded Cassava Roots 1

    PubMed Central

    Kojima, Mineo; Iwatsuki, Norio; Data, Emma S.; Villegas, Cynthia Dolores V.; Uritani, Ikuzo

    1983-01-01

    When cassava (Manihot esculenta Crantz) root was cut into blocks and incubated under laboratory conditions, the blocks showed more widespread and more even symptoms of physiological deterioration than those under natural conditions. Thus, the tissue block system has potential for biochemical studies of natural deterioration of cassava root. The changes in cyanide content and linamarase (linamarin β-d-glucoside glucohydrolase; EC 3.2.1.21) activity in various tissues during physiological deterioration were investigated. Total cyanide content increased in all parts of block tissue after 3-day incubation. The degree of increase in cyanide was most pronounced in white parenchymal tissue, 2 to 3 millimeters thick, next to the cortex (A-part tissue), where no physiological symptoms appeared. On the other hand, linamarase activity was decreased in all parts of block tissue after a 3-day incubation. A time course analysis of A-part tissue indicated a clear reciprocal relationship between changes in total cyanide and linamarase activity; total cyanide increased, while linamarase activity decreased. Free cyanide constituted a very small portion of the total cyanide and did not change markedly. Images Fig. 2 PMID:16662957

  9. Evaluation of the impact of various agricultural practices on nitrate leaching under the root zone of potato and sugar beet using the STICS soil-crop model.

    PubMed

    Jégo, G; Martínez, M; Antigüedad, I; Launay, M; Sanchez-Pérez, J M; Justes, E

    2008-05-15

    The quaternary aquifer of Vitoria-Gasteiz (Basque Country, Northern Spain) is characterised by a shallow water table mainly fed by drainage water, and thus constitutes a vulnerable zone in regards to nitrate pollution. Field studies were performed with a potato crop in 1993 and a sugar beet crop in 2002 to evaluate their impact on nitrate leaching. The overall predictive quality of the STICS soil-crop model was first evaluated using field data and then the model was used to analyze dynamically the impacts of different crop management practices on nitrate leaching. The model was evaluated (i) on soil nitrate concentrations at different depths and (ii) on crop yields. The simulated values proved to be in satisfactory agreement with measured values. Nitrate leaching was more pronounced with the potato crop than with the sugar beet experiment due to i) greater precipitation, ii) lower N uptake of the potato crop due to shallow root depth, and iii) a shorter period of growth. The potato experiment showed that excessive irrigation could significantly increase nitrate leaching by increasing both drainage and nitrate concentrations. The different levels of N-fertilization examined in the sugar beet study had no notable effects on nitrate leaching due to its high N uptake capacity. Complementary virtual experiments were carried out using the STICS model. Our study confirmed that in vulnerable zones agricultural practices must be adjusted, that is to say: 1) N-fertilizer should not be applied in autumn before winter crops; 2) crops with low N uptake capacity (e.g. potatoes) should be avoided or should be preceded and followed by nitrogen catch crops or cover crops; 3) the nitrate concentration of irrigation water should be taken into account in calculation of the N-fertilization rate, and 4) N-fertilization must be precisely adjusted in particular for potato crops.

  10. Antioxidant and antityrosinase activity of mulberry (Morus alba L.) twigs and root bark.

    PubMed

    Chang, Lee-Wen; Juang, Lih-Jeng; Wang, Bor-Sen; Wang, Mei-Ying; Tai, Huo-Mu; Hung, Wei-Jing; Chen, Yun-Ju; Huang, Ming-Hsing

    2011-04-01

    The antioxidant and antityrosinase activities of the ethanolic extract of mulberry twigs (EEMT) were investigated. The results showed that EEMT exhibited radical scavenging and reducing activity, as well as ferrous ion-chelating activity. In addition, EEMT also protected phospholipids against free radicals, indicating that EEMT could protect biomolecules from oxidative damage. Meanwhile, in the range of 0-60 μg/ml, the tyrosinase inhibitory activity of EEMT increased with increase in sample concentration, and was superior to that of the ethanolic extract of mulberry root bark (EEMR). High-performance liquid chromatography (HPLC) analysis was employed to determine the phenolic components, revealing that maclurin, rutin, isoquercitrin, resveratrol, and morin were present in EEMT. Acting as an antioxidant and a tyrosinase inhibitor, these bioactive constituents could contribute to the protective effects of EEMT. Overall, the results showed that EEMT might serve as a natural antioxidant and tyrosinase inhibitor.

  11. Nucleoside Diphosphatase and 5′-Nucleotidase Activities of Soybean Root Nodules and Other Tissues 1

    PubMed Central

    Doremus, Holly D.; Blevins, Dale G.

    1988-01-01

    Nucleoside diphosphatase and 5′-nucleotidase activities were both found to be very high in extracts of soybean (Glycine max L.) root nodules. Both activities increased early in soybean nodule development, prior to the rise in leghemoglobin, and both were found at equivalent levels in nitrogenfixing and nonfixing nodules. Based on a survey of other tissues, these activities were both highest in soybean nodules (1300 nanomoles per milligram protein per minute, nucleoside diphosphatase and 500 nanomoles per milligram protein per minute, 5′-nucleotidase), but they were not always associated with each other; in some tissues one was high and the other low. Neither activity correlated well with ureide production; both seem, rather, to be primarily involved in some other metabolic function. Both the nucleoside diphosphatase and 5′-nucleotidase of soybean nodules were soluble proteins, and neither appeared to be associated with plastids, mitochondria, or bacteroids. PMID:16666122

  12. Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.

    PubMed

    Kobayashi, Takanori; Itai, Reiko Nakanishi; Senoura, Takeshi; Oikawa, Takaya; Ishimaru, Yasuhiro; Ueda, Minoru; Nakanishi, Hiromi; Nishizawa, Naoko K

    2016-07-01

    Under low iron availability, plants induce the expression of various genes involved in iron uptake and translocation at the transcriptional level. This iron deficiency response is affected by various plant hormones, but the roles of jasmonates in this response are not well-known. We investigated the involvement of jasmonates in rice iron deficiency responses. High rates of jasmonate-inducible genes were induced during the very early stages of iron deficiency treatment in rice roots. Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1. Ten out of 35 genes involved in jasmonate biosynthesis and signaling were rapidly induced at 3 h of iron deficiency treatment, and this induction preceded that of known iron deficiency-inducible genes involved in iron uptake and translocation. Twelve genes involved in jasmonate biosynthesis and signaling were also upregulated in HRZ-knockdown roots. Endogenous concentrations of jasmonic acid and jasmonoyl isoleucine tended to be rapidly increased in roots in response to iron deficiency treatment, whereas these concentrations were higher in HRZ-knockdown roots under iron-sufficient conditions. Analysis of the jasmonate-deficient cpm2 mutant revealed that jasmonates repress the expression of many iron deficiency-inducible genes involved in iron uptake and translocation under iron sufficiency, but this repression is partly canceled under an early stage of iron deficiency. These results indicate that jasmonate signaling is activated during the very early stages of iron deficiency, which is partly regulated by IDEF1 and OsHRZs.

  13. Re-analysis of RNA-seq transcriptome data reveals new aspects of gene activity in Arabidopsis root hairs

    PubMed Central

    Li, Wenfeng; Lan, Ping

    2015-01-01

    Root hairs, tubular-shaped outgrowths from root epidermal cells, play important roles in the acquisition of nutrients and water, interaction with microbe, and in plant anchorage. As a specialized cell type, root hairs, especially in Arabidopsis, provide a pragmatic research system for various aspects of studies. Here, we re-analyzed the RNA-seq transcriptome profile of Arabidopsis root hair cells by Tophat software and used Cufflinks program to mine the differentially expressed genes. Results showed that ERD14, RIN4, AT5G64401 were among the most abundant genes in the root hair cells; while ATGSTU2, AT5G54940, AT4G30530 were highly expressed in non-root hair tissues. In total, 5409 genes, with a fold change greater than two-fold (FDR adjusted P < 0.05), showed differential expression between root hair cells and non-root hair tissues. Of which, 61 were expressed only in root hair cells. One hundred and thirty-six out of 5409 genes have been reported to be “core” root epidermal genes, which could be grouped into nine clusters according to expression patterns. Gene ontology (GO) analysis of the 5409 genes showed that processes of “response to salt stress,” “ribosome biogenesis,” “protein phosphorylation,” and “response to water deprivation” were enriched. Whereas only process of “intracellular signal transduction” was enriched in the subset of 61 genes expressed only in the root hair cells. One hundred and twenty-one unannotated transcripts were identified and 14 of which were shown to be differentially expressed between root hair cells and non-root hair tissues, with transcripts XLOC_000763, XLOC_031361, and XLOC_005665 being highly expressed in the root hair cells. The comprehensive transcriptomic analysis provides new information on root hair gene activity and sets the stage for follow-up experiments to certify the biological functions of the newly identified genes and novel transcripts in root hair cell morphogenesis. PMID:26106402

  14. COSMOS Sensors in Agricultural Ecosystems: Accounting for Rapid Changes in Biomass in Order to Monitor Root Zone Water

    NASA Astrophysics Data System (ADS)

    Hornbuckle, B. K.; Irvin, S.; Franz, T. E.

    2013-12-01

    the transient and quasi-static hydrogen pools vary significantly over the course of a growing season. We expect that in order to use neutron detectors as soil moisture sensors we must certainly account for the growth of crops. However, we do not know whether all crops can be treated as simply a uniform layer of hydrogen or if it necessary to model specific crop geometries. Furthermore, we do not know if current allometric relationships are adequate to estimate root mass within the sensing depth of a neutron detector from above-ground measurements of vegetation. We will attempt to answer these questions by using periodic measurements of soil water in the top 30 cm and above-ground biomass within the footprint of a COSMOS probe for two crops with distinctive geometries: corn (stem-dominated) and soybean (leaf-dominated).

  15. Abscisic acid and 14-3-3 proteins control K channel activity in barley embryonic root.

    PubMed

    van den Wijngaard, Paul W J; Sinnige, Mark P; Roobeek, Ilja; Reumer, Annet; Schoonheim, Peter J; Mol, Jos N M; Wang, Mei; De Boer, Albertus H

    2005-01-01

    Germination of seeds proceeds in general in two phases, an initial imbibition phase and a subsequent growth phase. In grasses like barley, the latter phase is evident as the emergence of the embryonic root (radicle). The hormone abscisic acid (ABA) inhibits germination because it prevents the embryo from entering and completing the growth phase. Genetic and physiological studies have identified many steps in the ABA signal transduction cascade, but how it prevents radicle elongation is still not clear. For elongation growth to proceed, uptake of osmotically active substances (mainly K(+)) is essential. Therefore, we have addressed the question of how the activity of K(+) permeable ion channels in the plasma membrane of radicle cells is regulated under conditions of slow (+ABA) and rapid germination (+fusicoccin). We found that ABA arrests radicle growth, inhibits net K(+) uptake and reduces the activity of K(+) (in) channels as measured with the patch-clamp technique. In contrast, fusicoccin (FC), a well-known stimulator of germination, stimulates radicle growth, net K(+) uptake and reduces the activity of K(+) (out) channels. Both types of channels are under the control of 14-3-3 proteins, known as integral components of signal transduction pathways and instrumental in FC action. Intriguingly, 14-3-3 affected both channels in an opposite fashion: whereas K(+) (in) channel activity was fully dependent upon 14-3-3 proteins, K(+) (out) channel activity was reduced by 14-3-3 proteins by 60%. Together with previous data showing that 14-3-3 proteins control the activity of the plasma membrane H(+)-ATPase, this makes 14-3-3 a prime candidate for molecular master regulator of the cellular osmo-pump. Regulation of the osmo-pump activity by ABA and FC is an important mechanism in controlling the growth of the embryonic root during seed germination.

  16. Postsynaptic actin regulates active zone spacing and glutamate receptor apposition at the Drosophila neuromuscular junction.

    PubMed

    Blunk, Aline D; Akbergenova, Yulia; Cho, Richard W; Lee, Jihye; Walldorf, Uwe; Xu, Ke; Zhong, Guisheng; Zhuang, Xiaowei; Littleton, J Troy

    2014-07-01

    Synaptic communication requires precise alignment of presynaptic active zones with postsynaptic receptors to enable rapid and efficient neurotransmitter release. How transsynaptic signaling between connected partners organizes this synaptic apparatus is poorly understood. To further define the mechanisms that mediate synapse assembly, we carried out a chemical mutagenesis screen in Drosophila to identify mutants defective in the alignment of active zones with postsynaptic glutamate receptor fields at the larval neuromuscular junction. From this screen we identified a mutation in Actin 57B that disrupted synaptic morphology and presynaptic active zone organization. Actin 57B, one of six actin genes in Drosophila, is expressed within the postsynaptic bodywall musculature. The isolated allele, act(E84K), harbors a point mutation in a highly conserved glutamate residue in subdomain 1 that binds members of the Calponin Homology protein family, including spectrin. Homozygous act(E84K) mutants show impaired alignment and spacing of presynaptic active zones, as well as defects in apposition of active zones to postsynaptic glutamate receptor fields. act(E84K) mutants have disrupted postsynaptic actin networks surrounding presynaptic boutons, with the formation of aberrant actin swirls previously observed following disruption of postsynaptic spectrin. Consistent with a disruption of the postsynaptic actin cytoskeleton, spectrin, adducin and the PSD-95 homolog Discs-Large are all mislocalized in act(E84K) mutants. Genetic interactions between act(E84K) and neurexin mutants suggest that the postsynaptic actin cytoskeleton may function together with the Neurexin-Neuroligin transsynaptic signaling complex to mediate normal synapse development and presynaptic active zone organization.

  17. Postsynaptic actin regulates active zone spacing and glutamate receptor apposition at the Drosophila neuromuscular junction

    PubMed Central

    Blunk, Aline D.; Akbergenova, Yulia; Cho, Richard W.; Lee, Jihye; Walldorf, Uwe; Xu, Ke; Zhong, Guisheng; Zhuang, Xiaowei; Littleton, J. Troy

    2014-01-01

    Synaptic communication requires precise alignment of presynaptic active zones with postsynaptic receptors to enable rapid and efficient neurotransmitter release. How transsynaptic signaling between connected partners organizes this synaptic apparatus is poorly understood. To further define the mechanisms that mediate synapse assembly, we carried out a chemical mutagenesis screen in Drosophila to identify mutants defective in the alignment of