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Sample records for active root zone

  1. The Root Apex of Arabidopsis thaliana Consists of Four Distinct Zones of Growth Activities

    PubMed Central

    De Cnodder, Tinne; Le, Jie

    2006-01-01

    In the growing apex of Arabidopsis thaliana primary roots, cells proceed through four distinct phases of cellular activities. These zones and their boundaries can be well defined based on their characteristic cellular activities. The meristematic zone comprises, and is limited to, all cells that undergo mitotic divisions. Detailed in vivo analysis of transgenic lines reveals that, in the Columbia-0 ecotype, the meristem stretches up to 200 µm away from the junction between root and root cap (RCJ). In the transition zone, 200 to about 520 µm away from the RCJ, cells undergo physiological changes as they prepare for their fast elongation. Upon entering the transition zone, they progressively develop a central vacuole, polarize the cytoskeleton and remodel their cell walls. Cells grow slowly during this transition: it takes ten hours to triplicate cell length from 8.5 to about 35 µm in the trichoblast cell files. In the fast elongation zone, which covers the zone from 520 to about 850 µm from the RCJ, cell length quadruplicates to about 140 µm in only two hours. This is accompanied by drastic and specific cell wall alterations. Finally, root hairs fully develop in the growth terminating zone, where root cells undergo a minor elongation to reach their mature lengths. PMID:19517000

  2. Micro 3D ERT tomography for data assimilation modelling of active root zone

    NASA Astrophysics Data System (ADS)

    Vanella, Daniela; Busato, Laura; Boaga, Jacopo; Cassiani, Giorgio; Binley, Andrew; Putti, Mario; Consoli, Simona

    2016-04-01

    Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show

  3. Micro 3D ERT tomography for data assimilation modelling of active root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Busato, L.; Vanella, D.; Consoli, S.; Binley, A. M.

    2015-12-01

    Within the soil-plant-atmosphere system, root activity plays a fundamental role, as it connects different domains and allows a large part of the water and nutrient exchanges necessary for plant sustenance. The understanding of these processes is not only useful from an environmental point of view, making a fundamental contribution to the understanding of the critical zone dynamics, but also plays a pivotal role in precision agriculture, where the optimisation of water resources exploitation is mandatory and often carried out through deficit irrigation techniques. In this work, we present the results of non-invasive monitoring of the active root zone of two orange trees (Citrus sinensis, cv Tarocco Ippolito) located in an orange orchard in eastern Sicily (Italy) and drip irrigated with two different techniques: partial root drying and 100% crop evapotranspiration. The main goal of the monitoring activity is to assess possible differences between the developed root systems and the root water uptake between the two irrigation strategies. The monitoring is conducted using 3D micro-electrical resistivity tomography (ERT) based on an apparatus composed of a number of micro-boreholes (about 1.2 m deep) housing 12 electrodes each, plus a number of surface electrodes. Time-lapse measurements conducted both with long-term periodicity and short-term repetition before and after irrigation clearly highlight the presence and distribution of root water uptake zone both at shallow and larger depth, likely to correspond to zones utilized during the irrigation period (shallow) and during the time when the crop is not irrigated (deep). Subsidiary information is available in terms of precipitation, sap flow measurements and micrometeorological evapotranspiration estimates. This data ensemble lends itself to the assimilation into a variably saturated flow model, where both soil hydraulic parameters and root distribution shall be identified. Preliminary results in this directions show

  4. Identification of active root zone by data assimilation techniques: monitoring and modelling of irrigation experiments

    NASA Astrophysics Data System (ADS)

    Busato, Laura; Vanella, Daniela; Boaga, Jacopo; Manoli, Gabriele; Marani, Marco; Putti, Mario; Consoli, Simona; Binley, Andrew M.; Cassiani, Giorgio

    2015-04-01

    The identification of active root distribution and the quantification of relevant water fluxes (root water uptake-RWU) are key elements in understanding the exchanges of mass and energy in soil-plant-atmosphere systems. In this contribution we present the assimilation of 3D time-lapse Electrical Resistivity Tomography (ERT) data, acquired around an orange tree during irrigation experiments, in a soil-plant model that accounts for soil moisture dynamics and root water uptake (RWU), whole plant transpiration, and leaf-level photosynthesis. The model is based on a numerical solution to the 3D Richards equation modified to account for a 3D RWU, trunk xylem, and stomatal conductances. The data assimilation procedure, assisted also by independent information concerning the soil properties, aims specifically at identifying the distribution and strength of active roots modelled as sinks in the unsaturated flow model. In addition the flow model is enhanced by a forward electrical current model in order to predict the electrical response measured by ERT in dependence of the soil water content distribution. Strengths and weaknesses of the proposed approach are discussed.

  5. Regulation of invertase activity in different root zones of wheat (Triticum aestivum L.) seedlings in the course of osmotic adjustment under water deficit conditions.

    PubMed

    Königshofer, Helga; Löppert, Hans-Georg

    2015-07-01

    Osmotic adjustment of roots is an essential adaptive mechanism to sustain water uptake and root growth under water deficit. In this paper, the role of invertases (β-fructofuranosidase, EC 3.2.1.26) in osmotic adjustment was investigated in the root tips (cell division and elongation zone) and the root maturation zone of wheat (Triticum aestivum L. cv. Josef) in the course of osmotic stress imposed by 20% polyethylene glycol (PEG) 6000. The two root zones investigated differed distinctly in the response of invertases to water deprivation. In the root tips, the activity of the vacuolar and cell wall-bound invertases increased markedly under water stress resulting in the accumulation of hexoses (glucose and fructose) that contributed significantly to osmotic adjustment. A transient rise in hydrogen peroxide (H2O2) preceded the enhancement of invertases upon exposure to osmotic stress. Treatment with the NADPH oxidase inhibitor diphenylene iodonium (DPI) abolished the stress induced H2O2 production and suppressed the stimulation of the vacuolar invertase activity, whereas the activity of the cell wall-bound invertase was not influenced by DPI. As a consequence of the inhibitory effect of DPI on the vacuolar invertase, hexose levels and osmotic adjustment were also markedly decreased in the root tips under water deficit in the presence of DPI. These data suggest that H2O2 probably generated by a NADPH oxidase is required as a signalling molecule for the up-regulation of the vacuolar invertase activity in the root tips under osmotic stress, thereby enhancing the capacity for osmotic adjustment. In the root maturation zone, an early H2O2 signal could not be detected in response to PEG application. Only an increase in the glucose level that was not paralleled by fructose and a slight stimulation of the activity of the vacuolar invertase occurred in the maturation zone after water deprivation. The stress induced accumulation of glucose in the maturation zone was not

  6. The Activity of Deep Roots in Bedrock Fractures at the Susquehanna Shale Hills Critical Zone Observatory, USA

    NASA Astrophysics Data System (ADS)

    Hasenmueller, E. A.; Gu, X.; Weitzman, J. N.; Adams, T. S.; Stinchcomb, G. E.; Eissenstat, D. M.; Brantley, S. L.; Kaye, J. P.

    2015-12-01

    Many areas in the world are characterized by shallow soils underlain by weathered bedrock, but root-rock interactions and their implications for regolith weathering are poorly understood. To test the role of tree roots in weathering bedrock, we excavated four pits along a catena in a shale-hosted catchment near the Susquehanna Shale Hills Critical Zone Observatory, USA. We measured a variety of physical and chemical properties including: (1) root density, distribution, and respiration rates, (2) soil gas, and (3) soil, rock, and rock fracture sediment elemental compositions, mineralogy, and morphology. As expected, root density declined rapidly with depth; nevertheless, roots were present in rock fractures even in the deepest, least weathered shale sampled (~ 1.8 m). Root density in the shale fractures was highest at the ridge for all depths and decreased 23-fold downslope as soils thickened and in spite of increasing rock fracture density. Root respiration rates (per gram of root) in fractures were comparable to those in augerable soil, with the highest respiration rates for all depths observed at the ridge. We only observed roots in larger shale fractures (> 50 μm) that were coated with sediment. These sediments were mineralogically and geochemically similar to overlying B and C soil horizons with respect to clay composition, total C and N, and potentially mineralizable C. Such similarities indicate that the sediment coatings are likely the result of translocation of soil particles downward into the fractures. However, concentrations of extractable inorganic N were higher in fracture sediments than in surface soils. Shale in contact with deep roots resembled unweathered parent material geochemically. In the bulk soil, depletion profiles (K, Mg, Si, Fe, and Al) relative to unweathered shale reflected characteristic weathering of illite and chlorite to kaolinite. Approximately 50% of soil K and Mg was lost as eroding particles, supporting the idea that fracture

  7. Enzymatic activities and arbuscular mycorrhizal colonization of Plantago lanceolata and Plantago major in a soil root zone under heavy metal stress.

    PubMed

    Gucwa-Przepióra, Ewa; Nadgórska-Socha, Aleksandra; Fojcik, Barbara; Chmura, Damian

    2016-03-01

    The objectives of the present field study were to examine the soil enzyme activities in the soil root zones of Plantago lanceolata and Plantago major in different heavy metal contaminated stands. Moreover, the investigations concerned the intensity of root endophytic colonization and metal bioaccumulation in roots and shoots. The investigated Plantago species exhibited an excluder strategy, accumulating higher metal content in the roots than in the shoots. The heavy metal accumulation levels found in the two plantain species in this study were comparable to other plants suggested as phytostabilizers; therefore, the selected Plantago species may be applied in the phytostabilization of heavy metal contaminated areas. The lower level of soil enzymes (dehydrogenase, urease, acid, and alkaline phosphatase) as well as the higher bioavailability of metals in the root zone soil of the two plantain species were found in an area affected by smelting activity, where organic matter content in the soil was also the smallest. Mycorrhizal colonization on both species in the contaminated area was similar to colonization in non-contaminated stands. However, the lowest arbuscule occurrence and an absence of dark septate endophytes were found in the area affected by the smelting activity. It corresponded with the lowest plant cover observed in this stand. The assessment of enzyme activity, mycorrhizal colonization, and the chemical and physical properties of soils proved to be sensitive to differences between sites and between Plantago species. PMID:26531716

  8. Soil Moisture Active Passive (SMAP) Mission Level 4 Surface and Root Zone Soil Moisture (L4_SM) Product Specification Document

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf H.; Ardizzone, Joseph V.; Kim, Gi-Kong; Lucchesi, Robert A.; Smith, Edmond B.; Weiss, Barry H.

    2015-01-01

    This is the Product Specification Document (PSD) for Level 4 Surface and Root Zone Soil Moisture (L4_SM) data for the Science Data System (SDS) of the Soil Moisture Active Passive (SMAP) project. The L4_SM data product provides estimates of land surface conditions based on the assimilation of SMAP observations into a customized version of the NASA Goddard Earth Observing System, Version 5 (GEOS-5) land data assimilation system (LDAS). This document applies to any standard L4_SM data product generated by the SMAP Project. The Soil Moisture Active Passive (SMAP) mission will enhance the accuracy and the resolution of space-based measurements of terrestrial soil moisture and freeze-thaw state. SMAP data products will have a noteworthy impact on multiple relevant and current Earth Science endeavors. These include: Understanding of the processes that link the terrestrial water, the energy and the carbon cycles, Estimations of global water and energy fluxes over the land surfaces, Quantification of the net carbon flux in boreal landscapes Forecast skill of both weather and climate, Predictions and monitoring of natural disasters including floods, landslides and droughts, and Predictions of agricultural productivity. To provide these data, the SMAP mission will deploy a satellite observatory in a near polar, sun synchronous orbit. The observatory will house an L-band radiometer that operates at 1.40 GHz and an L-band radar that operates at 1.26 GHz. The instruments will share a rotating reflector antenna with a 6 meter aperture that scans over a 1000 km swath.

  9. Continuous, high-resolution biospeckle imaging reveals a discrete zone of activity at the root apex that responds to contact with obstacles

    PubMed Central

    Ribeiro, K. M.; Barreto, B.; Pasqual, M.; White, P. J.; Braga, R. A.; Dupuy, L. X.

    2014-01-01

    Background and Aims Shining a laser onto biological material produces light speckles termed biospeckles. Patterns of biospeckle activity reflect changes in cell biochemistry, developmental processes and responses to the environment. The aim of this work was to develop methods to investigate the biospeckle activity in roots and to characterize the distribution of its intensity and response to thigmostimuli. Methods Biospeckle activity in roots of Zea mays, and also Jatropha curcas and Citrus limonia, was imaged live and in situ using a portable laser and a digital microscope with a spatial resolution of 10 μm per pixel and the ability to capture images every 0·080 s. A procedure incorporating a Fujii algorithm, image restoration using median and Gaussian filters, image segmentation using maximum-entropy threshold methods and the extraction of features using a tracing algorithm followed by spline fitting were developed to obtain quantitative information from images of biospeckle activity. A wavelet transform algorithm was used for spectral decomposition of biospeckle activity and generalized additive models were used to attribute statistical significance to changes in patterns of biospeckle activity. Key Results The intensity of biospeckle activity was greatest close to the root apex. Higher frequencies (3–6 Hz) contributed most to the total intensity of biospeckle activity. When a root encountered an obstacle, the intensity of biospeckle activity decreased abruptly throughout the root system. The response became attenuated with repeated thigmostimuli. Conclusions The data suggest that at least one component of root biospeckle activity resulted from a biological process, which is located in the zone of cell division and responds to thigmostimuli. However, neither individual cell division events nor root elongation is likely to be responsible for the patterns of biospeckle activity. PMID:24284818

  10. Expressing Constitutively Active Rheb in Adult Dorsal Root Ganglion Neurons Enhances the Integration of Sensory Axons that Regenerate Across a Chondroitinase-Treated Dorsal Root Entry Zone Following Dorsal Root Crush.

    PubMed

    Wu, Di; Klaw, Michelle C; Kholodilov, Nikolai; Burke, Robert E; Detloff, Megan R; Côté, Marie-Pascale; Tom, Veronica J

    2016-01-01

    While the peripheral branch of dorsal root ganglion neurons (DRG) can successfully regenerate after injury, lesioned central branch axons fail to regrow across the dorsal root entry zone (DREZ), the interface between the dorsal root and the spinal cord. This lack of regeneration is due to the limited regenerative capacity of adult sensory axons and the growth-inhibitory environment at the DREZ, which is similar to that found in the glial scar after a central nervous system (CNS) injury. We hypothesized that transduction of adult DRG neurons using adeno-associated virus (AAV) to express a constitutively-active form of the GTPase Rheb (caRheb) will increase their intrinsic growth potential after a dorsal root crush. Additionally, we posited that if we combined that approach with digestion of upregulated chondroitin sulfate proteoglycans (CSPG) at the DREZ with chondroitinase ABC (ChABC), we would promote regeneration of sensory axons across the DREZ into the spinal cord. We first assessed if this strategy promotes neuritic growth in an in vitro model of the glial scar containing CSPG. ChABC allowed for some regeneration across the once potently inhibitory substrate. Combining ChABC treatment with expression of caRheb in DRG significantly improved this growth. We then determined if this combination strategy also enhanced regeneration through the DREZ after dorsal root crush in adult rats in vivo. After unilaterally crushing C4-T1 dorsal roots, we injected AAV5-caRheb or AAV5-GFP into the ipsilateral C5-C8 DRGs. ChABC or PBS was injected into the ipsilateral dorsal horn at C5-C8 to digest CSPG, for a total of four animal groups (caRheb + ChABC, caRheb + PBS, GFP + ChABC, GFP + PBS). Regeneration was rarely observed in PBS-treated animals, whereas short-distance regrowth across the DREZ was observed in ChABC-treated animals. No difference in axon number or length between the ChABC groups was observed, which may be related to intraganglionic inflammation induced by the

  11. Expressing Constitutively Active Rheb in Adult Dorsal Root Ganglion Neurons Enhances the Integration of Sensory Axons that Regenerate Across a Chondroitinase-Treated Dorsal Root Entry Zone Following Dorsal Root Crush

    PubMed Central

    Wu, Di; Klaw, Michelle C.; Kholodilov, Nikolai; Burke, Robert E.; Detloff, Megan R.; Côté, Marie-Pascale; Tom, Veronica J.

    2016-01-01

    While the peripheral branch of dorsal root ganglion neurons (DRG) can successfully regenerate after injury, lesioned central branch axons fail to regrow across the dorsal root entry zone (DREZ), the interface between the dorsal root and the spinal cord. This lack of regeneration is due to the limited regenerative capacity of adult sensory axons and the growth-inhibitory environment at the DREZ, which is similar to that found in the glial scar after a central nervous system (CNS) injury. We hypothesized that transduction of adult DRG neurons using adeno-associated virus (AAV) to express a constitutively-active form of the GTPase Rheb (caRheb) will increase their intrinsic growth potential after a dorsal root crush. Additionally, we posited that if we combined that approach with digestion of upregulated chondroitin sulfate proteoglycans (CSPG) at the DREZ with chondroitinase ABC (ChABC), we would promote regeneration of sensory axons across the DREZ into the spinal cord. We first assessed if this strategy promotes neuritic growth in an in vitro model of the glial scar containing CSPG. ChABC allowed for some regeneration across the once potently inhibitory substrate. Combining ChABC treatment with expression of caRheb in DRG significantly improved this growth. We then determined if this combination strategy also enhanced regeneration through the DREZ after dorsal root crush in adult rats in vivo. After unilaterally crushing C4-T1 dorsal roots, we injected AAV5-caRheb or AAV5-GFP into the ipsilateral C5-C8 DRGs. ChABC or PBS was injected into the ipsilateral dorsal horn at C5-C8 to digest CSPG, for a total of four animal groups (caRheb + ChABC, caRheb + PBS, GFP + ChABC, GFP + PBS). Regeneration was rarely observed in PBS-treated animals, whereas short-distance regrowth across the DREZ was observed in ChABC-treated animals. No difference in axon number or length between the ChABC groups was observed, which may be related to intraganglionic inflammation induced by the

  12. Specialized zones of development in roots

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1995-01-01

    The authors propose using the term "distal elongation zone" (DEZ) rather than "postmitotic isodiametric growth zone" to refer to the group of cells between the apical meristem and the elongation zone in plant roots. Reasons presented for the change are that the proposed DEZ includes many cells that are still dividing, most cells in the region are not isodiametric, and the pattern of cell expansion in this region varies with position in the region. Cells in the DEZ respond to gravistimulation, mechanical impedance, electrotropic stimulation, water stress, and auxin. Differences in gene expression patterns between DEZ cells and cells in the main elongation zone are noted.

  13. Partial root zone drying: regulation of photosynthetic limitations and antioxidant enzymatic activities in young olive (Olea europaea) saplings.

    PubMed

    Aganchich, Badia; Wahbi, Said; Loreto, Francesco; Centritto, Mauro

    2009-05-01

    The effect of partial root drying (PRD) irrigation on split-root olive (Olea europaea L. cv Picholine marocaine) saplings was investigated. An irrigated control and two PRD regimes were applied (control: irrigation applied on both sides of the root system to keep the soil water content close to field capacity; PRD(50): irrigation applied at 50% of the control amount on one side of the root system and irrigation withheld from the other side, with irrigation regimes switched between the sides of the root system every 2 weeks; and PRD(100): irrigation applied at 100% of the control amount on one side and irrigation withheld on the other side, with irrigation regimes switched between the sides of the root system every 2 weeks. Only saplings in the PRD(50) regime were subjected to water-deficit irrigation. The PRD treatments significantly affected water relations and vegetative growth throughout the growing season. Predawn leaf water potential and relative water content differed significantly between the PRD(50) and PRD(100) saplings, leading to reduced stomatal conductance, carbon assimilation, shoot length and leaf number in PRD(50) saplings. However, the PRD(50) water-deficit treatment did not affect the capacity of the saplings to assimilate CO(2). Activities of superoxide dismutase, soluble and insoluble peroxidase (POX) and polyphenol oxidase were up-regulated by the PRD(50) and PRD(100) treatments compared with control values. The higher activities of both soluble and insoluble POX observed in PRD(50) saplings may reflect the greater inhibitory effect of this treatment on vegetative growth. Up-regulation of the detoxifying systems in the PRD(100) and PRD(50) saplings may have provided protection mechanisms against irreversible damage to the photosynthetic machinery, thereby allowing the photosynthetic apparatus to function and preventing the development of severe water stress. We also measured CO(2) assimilation rate/internal leaf CO(2) concentration (A

  14. Subsurface Carbon Cycling Below the Root Zone

    NASA Astrophysics Data System (ADS)

    Wan, J.; Dong, W.; Kim, Y.; Tokunaga, T. K.; Bill, M.; Conrad, M. E.; Williams, K. H.; Long, P. E.; Hubbard, S. S.

    2014-12-01

    Carbon in the subsurface below the root zone is an important yet poorly understood link in the terrestrial C cycle, interfacing between overlying soil and downstream aquatic systems. Thus, the nature and behavior of C in the vadose zone and groundwater, particularly the dynamics of mobile dissolved and suspended aqueous species, need to be understood for predicting C cycling and responses to climate change. This study is designed to understand the C balance (influxes, effluxes, and sequestration) and mechanisms controlling subsurface organic and inorganic C transport and transformation. Our initial investigations are being conducted at the Rifle Site floodplain along the Colorado River, in Colorado (USA). Within this floodplain, sediment samples were collected and sampling/monitoring instruments were installed down to 7 m depth at three sites. Pore water and gas samplers at 0.5 m depth intervals within the ~3.5 m deep vadose zone, and multilevel aquifer samplers have yielded depth- and time-resolved profiles of dissolved and suspended organic and inorganic C, and CO2 for over 1.5 years. Analyses conducted to determine seasonally and vertically resolved geochemical profiles show that dissolved organic matter (DOM) characteristics vary among three distinct hydrobiogeochemical zones; the vadose zone, capillary fringe, and saturated zone. The concentrations of dissolved organic matter (DOM) are many times higher in the vadose zone and the capillary fringe than in groundwater, and vary seasonally. The DOM speciation, aqueous geochemistry, solid phase analyses, and d13C isotope data show the importance of both biotic and abiotic C transformations during transport through the vertical gradients of moisture and temperature. In addition to DOM, suspended organic C and bacteria have been collected from samplers within the capillary fringe. Based on the field-based findings, long-term laboratory column experiments are being conducted under simulated field moisture

  15. Snow-cover dynamics monitored by automatic digital photography at the rooting zone of an active rock glacier in the Hinteres Lantal Cirque, Austria

    NASA Astrophysics Data System (ADS)

    Kellerer-Pirklbauer, Andreas; Rieckh, Matthias; Avian, Michael

    2010-05-01

    Knowledge regarding snow-cover dynamics and climatic conditions in the rooting zone of active rock glaciers is still limited. The number of meteorological stations on the surface of or close to active rock glaciers is increasing. However, areal information on snow-cover distribution and its spatial dynamics caused by different processes on rock glaciers surfaces with a high temporal resolution from such remote alpine areas are mostly difficult to obtain. To face this problem an automatic remote digital camera (RDC) system was proprietary developed. The core parts of the RDC system are a standard hand-held digital camera, a remote control, a water proof casing with a transparent opening, a 12V/25Ah battery and solar panels with a charge controller. Three such devices were constructed and installed at different sites in the Central Alps of Austria. One RDC system is used to monitor the rooting zone of the highly active rock glacier in the Hinteres Langtal Cirque (46°59'N, 12°47'E), Central Schober Mountains, Austria. The 0.15 km² large NW-facing rock glaciers is tongue-shaped with a fast moving lower part (>1m/a) and a substantially slower upper part, ranging in elevation between 2455-2700 m a.s.l. The RDC system was set up in September 2006 and is located since than at 2770 m a.s.l. on a pronounced ridge crest that confines the Hinteres Langtal Cirque to the SW. The water proof casing was attached to a 1.5 m high metal pole which itself was fixed to the bedrock by screws and concrete glue. The viewing direction of the camera is NE. Hence, the image section of the RDC focuses on the rooting zone of the rock glacier and its headwalls up to c. 3000 m a.s.l. Photographs were taken daily at 3 pm providing the optimal lighting conditions in the relevant part of the cirque. 720 photographs were taken continuously in the period 12.09.2006 to 31.08.2008. These optical data were analysed by applying GIS and remote sensing techniques regarding snow-cover distribution

  16. Root zone calcium can modulate GA induced tuberization signal

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The present study was conducted to investigate the possible relationship between root zone calcium and GA3 concentration in tuberization signal. For this purpose, we developed a system utilizing in vitro propagated potato plantlets and pure silica sand that allows precise control of root zone chemic...

  17. Modeling Root Zone Effects on Preferred Pathways for the Passive Transport of Ions and Water in Plant Roots.

    PubMed

    Foster, Kylie J; Miklavcic, Stanley J

    2016-01-01

    We extend a model of ion and water transport through a root to describe transport along and through a root exhibiting a complexity of differentiation zones. Attention is focused on convective and diffusive transport, both radially and longitudinally, through different root tissue types (radial differentiation) and root developmental zones (longitudinal differentiation). Model transport parameters are selected to mimic the relative abilities of the different tissues and developmental zones to transport water and ions. For each transport scenario in this extensive simulations study, we quantify the optimal 3D flow path taken by water and ions, in response to internal barriers such as the Casparian strip and suberin lamellae. We present and discuss both transient and steady state results of ion concentrations as well as ion and water fluxes. We find that the peak in passive uptake of ions and water occurs at the start of the differentiation zone. In addition, our results show that the level of transpiration has a significant impact on the distribution of ions within the root as well as the rate of ion and water uptake in the differentiation zone, while not impacting on transport in the elongation zone. From our model results we infer information about the active transport of ions in the different developmental zones. In particular, our results suggest that any uptake measured in the elongation zone under steady state conditions is likely to be due to active transport. PMID:27446144

  18. Modeling Root Zone Effects on Preferred Pathways for the Passive Transport of Ions and Water in Plant Roots

    PubMed Central

    Foster, Kylie J.; Miklavcic, Stanley J.

    2016-01-01

    We extend a model of ion and water transport through a root to describe transport along and through a root exhibiting a complexity of differentiation zones. Attention is focused on convective and diffusive transport, both radially and longitudinally, through different root tissue types (radial differentiation) and root developmental zones (longitudinal differentiation). Model transport parameters are selected to mimic the relative abilities of the different tissues and developmental zones to transport water and ions. For each transport scenario in this extensive simulations study, we quantify the optimal 3D flow path taken by water and ions, in response to internal barriers such as the Casparian strip and suberin lamellae. We present and discuss both transient and steady state results of ion concentrations as well as ion and water fluxes. We find that the peak in passive uptake of ions and water occurs at the start of the differentiation zone. In addition, our results show that the level of transpiration has a significant impact on the distribution of ions within the root as well as the rate of ion and water uptake in the differentiation zone, while not impacting on transport in the elongation zone. From our model results we infer information about the active transport of ions in the different developmental zones. In particular, our results suggest that any uptake measured in the elongation zone under steady state conditions is likely to be due to active transport. PMID:27446144

  19. Global root zone storage capacity from satellite-based evaporation

    NASA Astrophysics Data System (ADS)

    Wang-Erlandsson, Lan; Bastiaanssen, Wim G. M.; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel B.; van Dijk, Albert I. J. M.; Guerschman, Juan P.; Keys, Patrick W.; Gordon, Line J.; Savenije, Hubert H. G.

    2016-04-01

    This study presents an "Earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale independent. In contrast to a traditional look-up table approach, our method captures the variability in root zone storage capacity within land cover types, including in rainforests where direct measurements of root depths otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM (Simple Terrestrial Evaporation to Atmosphere Model) improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. Our results suggest that several forest types are able to create a large storage to buffer for severe droughts (with a very long return period), in contrast to, for example, savannahs and woody savannahs (medium length return period), as well as grasslands, shrublands, and croplands (very short return period). The presented method to estimate root zone storage capacity eliminates the need for poor resolution soil and rooting depth data that form a limitation for achieving progress in the global land surface modelling community.

  20. Nocturnal and daytime stomatal conductance respond to root-zone temperature in ‘Shiraz’ grapevines

    PubMed Central

    Rogiers, Suzy Y.; Clarke, Simon J.

    2013-01-01

    Background and Aims Daytime root-zone temperature may be a significant factor regulating water flux through plants. Water flux can also occur during the night but nocturnal stomatal response to environmental drivers such as root-zone temperature remains largely unknown. Methods Here nocturnal and daytime leaf gas exchange was quantified in ‘Shiraz’ grapevines (Vitis vinifera) exposed to three root-zone temperatures from budburst to fruit-set, for a total of 8 weeks in spring. Key Results Despite lower stomatal density, night-time stomatal conductance and transpiration rates were greater for plants grown in warm root-zones. Elevated root-zone temperature resulted in higher daytime stomatal conductance, transpiration and net assimilation rates across a range of leaf-to-air vapour pressure deficits, air temperatures and light levels. Intrinsic water-use efficiency was, however, lowest in those plants with warm root-zones. CO2 response curves of foliar gas exchange indicated that the maximum rate of electron transport and the maximum rate of Rubisco activity did not differ between the root-zone treatments, and therefore it was likely that the lower photosynthesis in cool root-zones was predominantly the result of a stomatal limitation. One week after discontinuation of the temperature treatments, gas exchange was similar between the plants, indicating a reversible physiological response to soil temperature. Conclusions In this anisohydric grapevine variety both night-time and daytime stomatal conductance were responsive to root-zone temperature. Because nocturnal transpiration has implications for overall plant water status, predictive climate change models using stomatal conductance will need to factor in this root-zone variable. PMID:23293018

  1. A Root Zone Water Balance Algorithm for Educational Settings.

    ERIC Educational Resources Information Center

    Cahoon, Joel E.; Ferguson, Richard B.

    1995-01-01

    Describes a simple technique for monitoring root zone water status on demonstration project fields and incorporating the demonstration site results into workshop-type educational settings. Surveys indicate the presentation was well received by demonstration project cooperators and educators. (LZ)

  2. Distribution of Pseudomonas fluorescent bacteria in soils and in the root zone of plants.

    PubMed

    Sorokina, T A; Mishustin, E N

    1978-01-01

    The authors studied the ecology of fluorescent bacteria of the genus Pesudomonas. These were found to proliferate most actively in soils very high in fresh organic matter. In grassy and woody residue their numbers attained 30--60%, depending on the specific methods of bacterial sowing. Pseudomonas was particularly numerous in the root zone of plants fertilized by external metabolites of roots and decomposed roots and leaves. PMID:754809

  3. Root Zone Respiration on Hydroponically Grown Wheat Plant Systems

    NASA Technical Reports Server (NTRS)

    Soler-Crespo, R. A.; Monje, O. A.

    2010-01-01

    Root respiration is a biological phenomenon that controls plant growth and physiological development during a plant's lifespan. This process is dependent on the availability of oxygen in the system where the plant is located. In hydroponic systems, where plants are submerged in a solution containing vital nutrients but no type of soil, the availability of oxygen arises from the dissolved oxygen concentration in the solution. This oxygen concentration is dependent on the , gas-liquid interface formed on the upper surface of the liquid, as given by Henry's Law, depending on pressure and temperature conditions. Respiration rates of the plants rise as biomass and root zone increase with age. The respiration rate of Apogee wheat plants (Triticum aestivum) was measured as a function of light intensity (catalytic for photosynthesis) and CO2 concentration to determine their effect on respiration rates. To determine their effects on respiration rate and plant growth microbial communities were introduced into the system, by Innoculum. Surfactants were introduced, simulating gray-water usage in space, as another factor to determine their effect on chemical oxygen demand of microbials and on respiration rates of the plants. It is expected to see small effects from changes in CO2 concentration or light levels, and to see root respiration decrease in an exponential manner with plant age and microbial activity.

  4. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    Euser, Tanja; McMillan, Hilary; Hrachowitz, Markus; Winsemius, Hessel; Savenije, Hubert

    2015-04-01

    The root zone water storage capacity (Sr) of a catchment is an important variable for the hydrological behaviour of a catchment; it strongly influences the storage, transpiration and runoff generation in an area. However, the root zone storage capacity is largely heterogeneous and not measurable. There are different theories about the variables affecting the root zone storage capacity; among the most debated are soil, vegetation and climate. The effect of vegetation and soil is often accounted for by detailed soil and land use maps. To investigate the effect of climate on the root zone storage capacity, an analogue can be made between the root zone storage capacity of a catchment and the human habit to design and construct reservoirs: both storage capacities help to overcome a dry period of a certain length. Humans often use the mass curve technique to determine the required storage needed to design the reservoir capacity. This mass curve technique can also be used to derive the root zone storage capacity created by vegetation in a certain ecosystem and climate (Gao et al., 2014). Only precipitation and discharge or evaporation data are required for this method. This study tests whether Sr values derived by both the mass curve technique and from soil maps are comparable for a range of catchments in New Zealand. Catchments are selected over a gradient of climates and land use. Special focus lies on how Sr values derived for a larger catchment are representative for smaller nested catchments. The spatial differences are examined between values derived from soil data and from climate and flow data. Gao, H., Hrachowitz, M., Schymanski, S.J., Fenicia, F., Sriwongsitanon, N., Savenije, H.H.G, (2014): Climate controls how ecosystems size the root zone storage capacity at catchment scale. DOI: 10.1002/2014GL061668

  5. Time-lapse ERT for the monitoring of soil-plant interactions in the root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Rossi, M.; D'Alpaos, A.; Fadda, G.; Putti, M.; Marani, M.

    2013-12-01

    The application of time-lapse non invasive 3D micro-scale electrical resistivity tomography (ERT) has been proven to be an efficient tool to monitor the soil-plant interactions and particularly the root zone activity. This information can support water balance modeling in the upper subsoil critical zone. Here we present the results of two field experiments in very different environments: the case of a single apple tree in an orchard located in the Trentino region (Northern Italy), and the case of salt-marshes plants in the Venice Lagoon. The micro-scale ERT apparatus consists of buried electrodes installed on micro boreholes, plus mini-electrodes on the ground surface. We collected repeated ERT, TDR and tensiometer data. For the apple orchard site test we adopted controlled irrigation tests in different seasons, while in the lagoon salt-marshes we monitored the root-plant activity during tidal flooding. The results demonstrate that micro-scale ERT is a very effective tool to characterize subsoil conditions and monitor root zone activities, especially in terms of root zone suction regions. Micro-scale ERT can detect the main suction zones caused by the tree root activity, as demonstrated in the case of the apple orchard, while ERT and moisture measurements in the lagoon environment show a high resistivity suction layer located at root depth even during marsh flooding. Both observations will be important pieces of information for the comprehension of relevant eco- hydrological dynamics.

  6. Time-lapse ERT for the monitoring of soil-plant interactions in the root zone

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Rossi, M.; D'Alpaos, A.; Fadda, G.; Putti, M.; Marani, M.

    2011-12-01

    The application of time-lapse non invasive 3D micro-scale electrical resistivity tomography (ERT) has been proven to be an efficient tool to monitor the soil-plant interactions and particularly the root zone activity. This information can support water balance modeling in the upper subsoil critical zone. Here we present the results of two field experiments in very different environments: the case of a single apple tree in an orchard located in the Trentino region (Northern Italy), and the case of salt-marshes plants in the Venice Lagoon. The micro-scale ERT apparatus consists of buried electrodes installed on micro boreholes, plus mini-electrodes on the ground surface. We collected repeated ERT, TDR and tensiometer data. For the apple orchard site test we adopted controlled irrigation tests in different seasons, while in the lagoon salt-marshes we monitored the root-plant activity during tidal flooding. The results demonstrate that micro-scale ERT is a very effective tool to characterize subsoil conditions and monitor root zone activities, especially in terms of root zone suction regions. Micro-scale ERT can detect the main suction zones caused by the tree root activity, as demonstrated in the case of the apple orchard, while ERT and moisture measurements in the lagoon environment show a high resistivity suction layer located at root depth even during marsh flooding. Both observations will be important pieces of information for the comprehension of relevant eco- hydrological dynamics.

  7. Fruit removal increases root-zone respiration in cucumber

    PubMed Central

    Kläring, H.-P.; Hauschild, I.; Heißner, A.

    2014-01-01

    Background and Aims Many attempts have been made to avoid the commonly observed fluctuations in fruit initiation and fruit growth in crop plants, particularly in cucumber (Cucumis sativus). Weak sinks of the fruit have been assumed to result in low sink/source ratios for carbohydrates, which may inhibit photosynthesis. This study focuses on the effects of low sink–source ratios on photosynthesis and respiration, and in particular root-zone respiration. Methods Mature fruit-bearing cucumber plants were grown in an aerated nutrient solution. The root containers were designed as open chambers to allow measurement of CO2 gas exchange in the root zone. A similar arrangement in a gas-exchange cuvette enabled simultaneous measurements of CO2 exchange in the shoot and root zones. Key Results Reducing the sinks for carbohydrates by removing all fruit from the plants always resulted in a doubling of CO2 exchange in the root zone within a few hours. However, respiration of the shoot remained unaffected and photosynthesis was only marginally reduced, if at all. Conclusions The results suggest that the increased level of CO2 gas exchange in the root zone after removing the carbon sinks in the shoot is due primarily to the exudation of organic compounds by the roots and their decomposition by micro-organisms. This hypothesis must be tested in further experiments, but if proved correct it would make sense to include carbon leakage by root exudation in cucumber production models. In contrast, inhibition of photosynthesis was measurable only at zero fruit load, a situation that does not occur in cucumber production systems, and models that estimate production can therefore ignore (end-product) inhibition of photosynthesis. PMID:25301817

  8. Root-Zone Glyphosate Exposure Adversely Affects Two Ditch Species

    PubMed Central

    Saunders, Lyndsay E.; Koontz, Melissa B.; Pezeshki, Reza

    2013-01-01

    Glyphosate, one of the most applied herbicides globally, has been extensively studied for its effects on non-target organisms. In the field, following precipitation, glyphosate runs off into agricultural ditches where it infiltrates into the soil and thus may encounter the roots of vegetation. These edge-of-field ditches share many characteristics with wetlands, including the ability to reduce loads of anthropogenic chemicals through uptake, transformation, and retention. Different species within the ditches may have a differential sensitivity to exposure of the root zone to glyphosate, contributing to patterns of abundance of ruderal species. The present laboratory experiment investigated whether two species commonly found in agricultural ditches in southcentral United States were affected by root zone glyphosate in a dose-dependent manner, with the objective of identifying a sublethal concentration threshold. The root zone of individuals of Polygonum hydropiperoides and Panicum hemitomon were exposed to four concentrations of glyphosate. Leaf chlorophyll content was measured, and the ratio of aboveground biomass to belowground biomass and survival were quantified. The findings from this study showed that root zone glyphosate exposure negatively affected both species including dose-dependent reductions in chlorophyll content. P. hydropiperdoides showed the greatest negative response, with decreased belowground biomass allocation and total mortality at the highest concentrations tested. PMID:24833234

  9. Effects of partial root-zone irrigation on hydraulic conductivity in the soil-root system of maize plants.

    PubMed

    Hu, Tiantian; Kang, Shaozhong; Li, Fusheng; Zhang, Jianhua

    2011-08-01

    Effects of partial root-zone irrigation (PRI) on the hydraulic conductivity in the soil-root system (L(sr)) in different root zones were investigated using a pot experiment. Maize plants were raised in split-root containers and irrigated on both halves of the container (conventional irrigation, CI), on one side only (fixed PRI, FPRI), or alternately on one of two sides (alternate PRI, APRI). Results show that crop water consumption was significantly correlated with L(sr) in both the whole and irrigated root zones for all three irrigation methods but not with L(sr) in the non-irrigated root zone of FPRI. The total L(sr) in the irrigated root zone of two PRIs was increased by 49.0-92.0% compared with that in a half root zone of CI, suggesting that PRI has a significant compensatory effect of root water uptake. For CI, the contribution of L(sr) in a half root zone to L(sr) in the whole root zone was ∼50%. For FPRI, the L(sr) in the irrigated root zone was close to that of the whole root zone. As for APRI, the L(sr) in the irrigated root zone was greater than that of the non-irrigated root zone. In comparison, the L(sr) in the non-irrigated root zone of APRI was much higher than that in the dried zone of FPRI. The L(sr) in both the whole and irrigated root zones was linearly correlated with soil moisture in the irrigated root zone for all three irrigation methods. For the two PRI treatments, total water uptake by plants was largely determined by the soil water in the irrigated root zone. Nevertheless, the non-irrigated root zone under APRI also contributed to part of the total crop water uptake, but the continuously non-irrigated root zone under FPRI gradually ceased to contribute to crop water uptake, suggesting that it is the APRI that can make use of all the root system for water uptake, resulting in higher water use efficiency. PMID:21527627

  10. Effects of partial root-zone irrigation on hydraulic conductivity in the soil–root system of maize plants

    PubMed Central

    Hu, Tiantian; Kang, Shaozhong; Li, Fusheng; Zhang, Jianhua

    2011-01-01

    Effects of partial root-zone irrigation (PRI) on the hydraulic conductivity in the soil–root system (Lsr) in different root zones were investigated using a pot experiment. Maize plants were raised in split-root containers and irrigated on both halves of the container (conventional irrigation, CI), on one side only (fixed PRI, FPRI), or alternately on one of two sides (alternate PRI, APRI). Results show that crop water consumption was significantly correlated with Lsr in both the whole and irrigated root zones for all three irrigation methods but not with Lsr in the non-irrigated root zone of FPRI. The total Lsr in the irrigated root zone of two PRIs was increased by 49.0–92.0% compared with that in a half root zone of CI, suggesting that PRI has a significant compensatory effect of root water uptake. For CI, the contribution of Lsr in a half root zone to Lsr in the whole root zone was ∼50%. For FPRI, the Lsr in the irrigated root zone was close to that of the whole root zone. As for APRI, the Lsr in the irrigated root zone was greater than that of the non-irrigated root zone. In comparison, the Lsr in the non-irrigated root zone of APRI was much higher than that in the dried zone of FPRI. The Lsr in both the whole and irrigated root zones was linearly correlated with soil moisture in the irrigated root zone for all three irrigation methods. For the two PRI treatments, total water uptake by plants was largely determined by the soil water in the irrigated root zone. Nevertheless, the non-irrigated root zone under APRI also contributed to part of the total crop water uptake, but the continuously non-irrigated root zone under FPRI gradually ceased to contribute to crop water uptake, suggesting that it is the APRI that can make use of all the root system for water uptake, resulting in higher water use efficiency. PMID:21527627

  11. Degradation of Surfactants in Hydroponic Wheat Root Zones

    NASA Astrophysics Data System (ADS)

    Monje, Oscar; McCoy, Lashelle; Flanagan, Aisling

    Hygiene water recycling in recirculating hydroponic systems can be enhanced by plant roots by providing a substrate and root exudates for bacterial growth. However, reduced plant growth can occur during batch mode additions of high concentrations of surfactant. An analog hygiene water stream containing surfactants (Steol CS330, Mirataine CB) was added to a hydroponically-grown wheat plant root zone. The plants were grown at 700 mol mol-1 CO2, a photosynthetic photon flux of 300 mol m-2 s-1, and a planting density of 380 plants m-2. Volumetric oxygen mass transfer coefficients were determined using the fermentative/dynamic outgassing method to maintain adequate oxygen mass transfer rates in the root zone. This analysis suggested an optimal flow rate of the hydroponic solution of 5 L min-1. The hydroponic system was inoculated with biofilm from a bioreactor and rates of surfactant degradation were measured daily based on reduction in chemical oxygen demand (COD). The COD decreased from 400 to 100 mg L-1 after 2 days following batch addition of the analog hygiene water to the hydroponic system. Measurements of dissolved oxygen concentration and solution temperature suggest that the root zone was provided adequate aeration to meet both oxygen demands from plant and microbial respiration during the degradation of the surfactant. Results from this study show that hydroponic systems can be used to enhance rates of hygiene water processing.

  12. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    de Boer-Euser, Tanja; McMillan, Hilary; Hrachowitz, Markus; Winsemius, Hessel; Savenije, Hubert

    2016-04-01

    The catchment representative root zone storage capacity (Sr), i.e. the plant available soil water, is an important parameter of hydrological systems. It does not only influence the runoff from catchments, by controlling the partitioning of water fluxes but it also influences the local climate, by providing the source for transpiration. Sr is difficult to observe at catchment scale, due to heterogeneities in vegetation and soils. Sr estimates are traditionally derived from soil characteristics and estimates of root depths. In contrast, a recently suggested method allows the determination of Sr based on climate data, i.e. precipitation and evaporation, alone (Gao et al., 2014). By doing so, the time-variable size of Sr, is explicitly accounted for, which is not the case for traditional soil based methods. The time-variable size of Sr reflects root growth and thus the vegetation's adaption to medium-term fluctuations in the climate. Thus, we tested and compared Sr estimates from this 'climate based method' with estimates from soil data for 32 catchments in New Zealand. The results show a larger range in climate derived Sr than in soil derived Sr. Using a model experiment, we show that a model using the climate derived Sr is more accurately able to reproduce a set of hydrological regime signatures, in particular for humid catchments. For more arid catchments, the two methods provide similar model results. This implies that, although soil database information has some predictive power for model soil storage capacity, climate has a similar or greater control on Sr, as climate affects the evolving hydrological functioning of the root zone at the time scale of hydrological interest. In addition, Sr represents the plant available water and thus root surface, volume and density, and is therefore a more complete descriptor of vegetation influence on water fluxes than mere root depth. On balance, the results indicate that climate has a higher explanatory power than soils for

  13. Soil moisture dynamics modeling considering multi-layer root zone.

    PubMed

    Kumar, R; Shankar, V; Jat, M K

    2013-01-01

    The moisture uptake by plant from soil is a key process for plant growth and movement of water in the soil-plant system. A non-linear root water uptake (RWU) model was developed for a multi-layer crop root zone. The model comprised two parts: (1) model formulation and (2) moisture flow prediction. The developed model was tested for its efficiency in predicting moisture depletion in a non-uniform root zone. A field experiment on wheat (Triticum aestivum) was conducted in the sub-temperate sub-humid agro-climate of Solan, Himachal Pradesh, India. Model-predicted soil moisture parameters, i.e., moisture status at various depths, moisture depletion and soil moisture profile in the root zone, are in good agreement with experiment results. The results of simulation emphasize the utility of the RWU model across different agro-climatic regions. The model can be used for sound irrigation management especially in water-scarce humid, temperate, arid and semi-arid regions and can also be integrated with a water transport equation to predict the solute uptake by plant biomass. PMID:23579833

  14. A minimalist probabilistic description of root zone soil water

    USGS Publications Warehouse

    Milly, P.C.D.

    2001-01-01

    The probabilistic response of depth-integrated soil water to given climatic forcing can be described readily using an existing supply-demand-storage model. An apparently complex interaction of numerous soil, climate, and plant controls can be reduced to a relatively simple expression for the equilibrium probability density function of soil water as a function of only two dimensionless parameters. These are the index of dryness (ratio of mean potential evaporation to mean precipitation) and a dimensionless storage capacity (active root zone soil water capacity divided by mean storm depth). The first parameter is mainly controlled by climate, with surface albedo playing a subsidiary role in determining net radiation. The second is a composite of soil (through moisture retention characteristics), vegetation (through rooting characteristics), and climate (mean storm depth). This minimalist analysis captures many essential features of a more general probabilistic analysis, but with a considerable reduction in complexity and consequent elucidation of the critical controls on soil water variability. In particular, it is shown that (1) the dependence of mean soil water on the index of dryness approaches a step function in the limit of large soil water capacity; (2) soil water variance is usually maximized when the index of dryness equals 1, and the width of the peak varies inversely with dimensionless storage capacity; (3) soil water has a uniform probability density function when the index of dryness is 1 and the dimensionless storage capacity is large; and (4) the soil water probability density function is bimodal if and only if the index of dryness is <1, but this bimodality is pronounced only for artificially small values of the dimensionless storage capacity.

  15. Monitoring and Modelling of Soil-Plant Interactions: the Joint Use of ERT, Sap Flow and Eddy Covariance to Define the Volume of Orange Tree Active Root Zones.

    NASA Astrophysics Data System (ADS)

    Cassiani, G.; Boaga, J.; Vanella, D.; Perri, M. T.; Consoli, S.

    2014-12-01

    Mass and energy exchanges between soil, plants and atmosphere are key factors controlling a number of environmental processes involving hydrology, biota and climate. The understanding of these exchanges also play a critical role for practical purposes such as precision agriculture. In this contribution we present a methodology based on coupling innovative data collection and models. In particular we propose the use of hydro-geophysical monitoring via 4D Electrical Resistivity Tomography (ERT) in conjunction with measurements of plant transpiration via sap flow and evapotranspiration from Eddy Correlation (EC). This abundance of data are to be fed in spatially distributed soil models in order to comprehend the distribution of active roots. We conducted experiments in an orange orchard in Eastern Sicily (Italy). We installed a 3D electrical tomography apparatus consisting of 4 instrumented micro boreholes placed at the corners of a square (about 1.3 m in side) surrounding an orange tree. During the monitoring, we collected repeated ERT and TDR soil moisture measurements, soil water sampling, sap flow measurements from the orange tree and EC data. Irrigation, precipitation, sap flow and ET data are available for a long period of time allowing knowledge of the long term forcing conditions on the system. This wealth of information was used to calibrate a 1D Richards' equation model representing the dynamics of the volume monitored via 3D ERT. Information on the soil hydraulic properties was collected from laboratory experiments as well as by time-lapse ERT monitoring of irrigation a few months after the main experiment, when the orange tree had been cut. The results of the calibrated modeling exercise allow the quantification of the soil volume interested by root water uptake. This volume is much smaller (an area less than 2 square meters, 40 cm thick) than generally believed and assumed in the design of classical drip irrigation schemes.

  16. Evidence of root zone hypoxia in Brassica rapa L. grown in microgravity

    NASA Technical Reports Server (NTRS)

    Stout, S. C.; Porterfield, D. M.; Briarty, L. G.; Kuang, A.; Musgrave, M. E.

    2001-01-01

    A series of experiments was conducted aboard the U.S. space shuttle and the Mir space station to evaluate microgravity-induced root zone hypoxia in rapid-cycling Brassica (Brassica rapa L.), using both root and foliar indicators of low-oxygen stress to the root zone. Root systems from two groups of plants 15 and 30 d after planting, grown in a phenolic foam nutrient delivery system on the shuttle (STS-87), were harvested and fixed for microscopy or frozen for enzyme assays immediately postflight or following a ground-based control. Activities of fermentative enzymes were measured as indicators of root zone hypoxia and metabolism. Following 16 d of microgravity, ADH (alcohol dehydrogenase) activity was increased in the spaceflight roots 47% and 475% in the 15-d-old and 30-d-old plants, respectively, relative to the ground control. Cytochemical localization showed ADH activity in only the root tips of the space-grown plants. Shoots from plants that were grown from seed in flight in a particulate medium on the Mir station were harvested at 13 d after planting and quick-frozen and stored in flight in a gaseous nitrogen freezer or chemically fixed in flight for subsequent microscopy. When compared to material from a high-fidelity ground control, concentrations of shoot sucrose and total soluble carbohydrate were significantly greater in the spaceflight treatment according to enzymatic carbohydrate analysis. Stereological analysis of micrographs of sections from leaf and cotyledon tissue fixed in flight and compared with ground controls indicated no changes in the volume of protoplast, cell wall, and intercellular space in parenchyma cells. Within the protoplasm, the volume occupied by starch was threefold higher in the spaceflight than in the ground control, with a concomitant decrease in vacuolar volume in the spaceflight treatment. Both induction of fermentative enzyme activity in roots and accumulation of carbohydrates in foliage have been repeatedly shown to occur

  17. Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey.

    PubMed

    Trevisan, Sara; Manoli, Alessandro; Ravazzolo, Laura; Botton, Alessandro; Pivato, Micaela; Masi, Antonio; Quaggiotti, Silvia

    2015-07-01

    Nitrate is an essential nutrient for plants, and crops depend on its availability for growth and development, but its presence in agricultural soils is far from stable. In order to overcome nitrate fluctuations in soil, plants have developed adaptive mechanisms allowing them to grow despite changes in external nitrate availability. Nitrate can act as both nutrient and signal, regulating global gene expression in plants, and the root tip has been proposed as the sensory organ. A set of genome-wide studies has demonstrated several nitrate-regulated genes in the roots of many plants, although only a few studies have been carried out on distinct root zones. To unravel new details of the transcriptomic and proteomic responses to nitrate availability in a major food crop, a double untargeted approach was conducted on a transition zone-enriched root portion of maize seedlings subjected to differing nitrate supplies. The results highlighted a complex transcriptomic and proteomic reprogramming that occurs in response to nitrate, emphasizing the role of this root zone in sensing and transducing nitrate signal. Our findings indicated a relationship of nitrate with biosynthesis and signalling of several phytohormones, such as auxin, strigolactones, and brassinosteroids. Moreover, the already hypothesized involvement of nitric oxide in the early response to nitrate was confirmed with the use of nitric oxide inhibitors. Our results also suggested that cytoskeleton activation and cell wall modification occurred in response to nitrate provision in the transition zone. PMID:25911739

  18. Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey

    PubMed Central

    Trevisan, Sara; Manoli, Alessandro; Ravazzolo, Laura; Botton, Alessandro; Pivato, Micaela; Masi, Antonio; Quaggiotti, Silvia

    2015-01-01

    Nitrate is an essential nutrient for plants, and crops depend on its availability for growth and development, but its presence in agricultural soils is far from stable. In order to overcome nitrate fluctuations in soil, plants have developed adaptive mechanisms allowing them to grow despite changes in external nitrate availability. Nitrate can act as both nutrient and signal, regulating global gene expression in plants, and the root tip has been proposed as the sensory organ. A set of genome-wide studies has demonstrated several nitrate-regulated genes in the roots of many plants, although only a few studies have been carried out on distinct root zones. To unravel new details of the transcriptomic and proteomic responses to nitrate availability in a major food crop, a double untargeted approach was conducted on a transition zone-enriched root portion of maize seedlings subjected to differing nitrate supplies. The results highlighted a complex transcriptomic and proteomic reprogramming that occurs in response to nitrate, emphasizing the role of this root zone in sensing and transducing nitrate signal. Our findings indicated a relationship of nitrate with biosynthesis and signalling of several phytohormones, such as auxin, strigolactones, and brassinosteroids. Moreover, the already hypothesized involvement of nitric oxide in the early response to nitrate was confirmed with the use of nitric oxide inhibitors. Our results also suggested that cytoskeleton activation and cell wall modification occurred in response to nitrate provision in the transition zone. PMID:25911739

  19. Geophysical imaging of root-zone, trunk, and moisture heterogeneity.

    PubMed

    Attia Al Hagrey, Said

    2007-01-01

    The most significant biotic and abiotic stress agents of water extremity, salinity, and infection lead to wood decay and modifications of moisture and ion content, and density. This strongly influences the (di-)electrical and mechanical properties and justifies the application of geophysical imaging techniques. These are less invasive and have high resolution in contrast to classical methods of destructive, single-point measurements for inspecting stresses in trees and soils. This review presents some in situ and in vivo applications of electric, radar, and seismic methods for studying water status and movement in soils, roots, and tree trunks. The electrical properties of a root-zone are a consequence of their moisture content. Electrical imaging discriminates resistive, woody roots from conductive, soft roots. Both types are recognized by low radar velocities and high attenuation. Single roots can generate diffraction hyperbolas in radargrams. Pedophysical relationships of water content to electrical resistivity and radar velocity are established by diverse infiltration experiments in the field, laboratory, and in the full-scale 'GeoModel' at Kiel University. Subsurface moisture distributions are derived from geophysical attribute models. The ring electrode technique around trunks images the growth ring structure of concentric resistivity, which is inversely proportional to the fluid content. Healthy trees show a central high resistivity within the dry heartwood that strongly decreases towards the peripheral wet sapwood. Observed structural deviations are caused by infection, decay, shooting, or predominant light and/or wind directions. Seismic trunk tomography also differentiates between decayed and healthy woods. PMID:17229759

  20. Separation of abscission zone cells in detached Azolla roots depends on apoplastic pH.

    PubMed

    Fukuda, Kazuma; Yamada, Yoshiya; Miyamoto, Kensuke; Ueda, Junichi; Uheda, Eiji

    2013-01-01

    In studies on the mechanism of cell separation during abscission, little attention has been paid to the apoplastic environment. We found that the apoplastic pH surrounding abscission zone cells in detached roots of the water fern Azolla plays a major role in cell separation. Abscission zone cells of detached Azolla roots were separated rapidly in a buffer at neutral pH and slowly in a buffer at pH below 4.0. However, cell separation rarely occurred at pH 5.0-5.5. Light and electron microscopy revealed that cell separation was caused by a degradation of the middle lamella between abscission zone cells at both pH values, neutral and below 4.0. Low temperature and papain treatment inhibited cell separation. Enzyme(s) in the cell wall of the abscission zone cells might be involved in the degradation of the pectin of the middle lamella and the resultant, pH-dependent cell separation. By contrast, in Phaseolus leaf petioles, unlike Azolla roots, cell separation was slow and increased only at acidic pH. The rapid cell separation, as observed in Azolla roots at neutral pH, did not occur. Indirect immunofluorescence microscopy, using anti-pectin monoclonal antibodies, revealed that the cell wall pectins of the abscission zone cells of Azolla roots and Phaseolus leaf petioles looked similar and changed similarly during cell separation. Thus, the pH-related differences in cell separation mechanisms of Azolla and Phaseolus might not be due to differences in cell wall pectin, but to differences in cell wall-located enzymatic activities responsible for the degradation of pectic substances. A possible enzyme system is discussed. PMID:22940290

  1. [Effects of exogenous glucose and starch on soil carbon metabolism of root zone and root function in potted sweet cherry].

    PubMed

    Zhou, Wen-jie; Zhang, Peng; Qin, Si-jun; Lyu, De-guo

    2015-11-01

    One-year-old potted sweet cheery trees were treated with 4 g · kg(-1) exogenous glucose or starch and with non-addition of exogenous carbon as the control for up to 60 days. Soil of root zone was sampled to analyze soil microbial biomass carbon, activities of invertase and amylase and microbial community functional diversity during the 60-day treatment, and roots were sampled for analysis of root respiratory rate, respiratory pathways and root viability after treatment for 30 days. Results showed that the invertase activity and the microbial biomass carbon initially increased and decreased subsequently, with the maxima which were 14.0% and 13.1% higher in the glucose treatment than in the control treatment appeared after 15 and 7 days of treatments, respectively. Soil organic matter content increased first then decreased and finally moderately increased again. Amylase activity was 7.5-fold higher in the starch treatment than in the control treatment after 15-day treatment. Soil microbial biomass carbon was higher in the starch treatment than in the control treatment except after 7-day treatment. Soil organic matter content initially increased and then decreased, but it was still 19.8% higher than in the control after 60-day treatment. BIOLOG results showed that the maximum average well color development (AWCD) value and microbial activity appeared after 15-day treatment in the following order: starch>glucose>control. After 30-day treatment, glucose treatment resulted in a significant increase in the soil microbial utilization of carbohydrates, carboxylic acid, amino acids, phenolic acids and amines, and starch treatment significantly increased the soil microbial utilization of carbohydrates, carboxylic acid, polymers and phenolic acids. After 30-day treatment, the total root respiratory rate and root viability were 21.4%, 19.4% and 65.5%, 37.0% higher in glucose treatment than in the control and starch treatments, respectively. These results indicated exogenous

  2. Cassava root membrane proteome reveals activities during storage root maturation.

    PubMed

    Naconsie, Maliwan; Lertpanyasampatha, Manassawe; Viboonjun, Unchera; Netrphan, Supatcharee; Kuwano, Masayoshi; Ogasawara, Naotake; Narangajavana, Jarunya

    2016-01-01

    Cassava (Manihot esculenta Crantz) is one of the most important crops of Thailand. Its storage roots are used as food, feed, starch production, and be the important source for biofuel and biodegradable plastic production. Despite the importance of cassava storage roots, little is known about the mechanisms involved in their formation. This present study has focused on comparison of the expression profiles of cassava root proteome at various developmental stages using two-dimensional gel electrophoresis and LC-MS/MS. Based on an anatomical study using Toluidine Blue, the secondary growth was confirmed to be essential during the development of cassava storage root. To investigate biochemical processes occurring during storage root maturation, soluble and membrane proteins were isolated from storage roots harvested from 3-, 6-, 9-, and 12-month-old cassava plants. The proteins with differential expression pattern were analysed and identified to be associated with 8 functional groups: protein folding and degradation, energy, metabolism, secondary metabolism, stress response, transport facilitation, cytoskeleton, and unclassified function. The expression profiling of membrane proteins revealed the proteins involved in protein folding and degradation, energy, and cell structure were highly expressed during early stages of development. Integration of these data along with the information available in genome and transcriptome databases is critical to expand knowledge obtained solely from the field of proteomics. Possible role of identified proteins were discussed in relation with the activities during storage root maturation in cassava. PMID:26547558

  3. Movement of endogenous calcium in the elongating zone of graviresponding roots of Zea mays

    NASA Technical Reports Server (NTRS)

    Moore, R.; Cameron, I. L.; Smith, N. K.

    1989-01-01

    Endogenous calcium (Ca) accumulates along the lower side of the elongating zone of horizontally oriented roots of Zea mays cv. Yellow Dent. This accumulation of Ca correlates positively with the onset of gravicurvature, and occurs in the cytoplasm, cell walls and mucilage of epidermal cells. Corresponding changes in endogenous Ca do not occur in cortical cells of the elongating zone of intact roots. These results indicate that the calcium asymmetries associated with root gravicurvature occur in the outermost layers of the root.

  4. Calcite mylonites in the Central Alpine ``root zone''

    NASA Astrophysics Data System (ADS)

    Heitzmann, Peter

    1987-04-01

    North of the Insubric line, in the Central Alpine "root zone", carbonate rocks are concentrated in very narrow zones and have been metamorphosed under amphibolite facies conditions by the Tertiary Lepontine metamorphism (grain size ~1 mm). Post-metamorphic deformation under greenschist facies conditions produced calcite mylonite bands a few millimeters to tens of meters wide in these marble zones. Microstructural development begins with twin formation, bending of twin boundaries, grain and twin boundary migration and recrystallization in high stress regions. Progressive mylonitization—by dynamic recrystallization—results in a microstructure with elongated calcite crystals (long axis 20-50 μm, axial ration 1:4). In this fine-grained matrix, porphyroclasts of calcite, quartz, white mica, biotite, diopside, tremolite, scapolite and plagioclase are preserved. Ultra-mylonite bands in pure calcite rocks show an even finer grain size of 5-10 μm. Lattice preferred orientation is not present in the undeformed marbles, but it develops during mylonitization. The c-axis orientation in the mylonites forms an asymmetric point maximum. In the ultra-mylonite no preferred orientation is left. It is concluded from microstructural and textural aspects, that during mylonitization, dislocation creep accompanied by dynamic recrystallization were the most important processes, whilst grain-boundary sliding was the dominant mechanism during the formation of the ultra-mylonites. Shear-sense determinations indicate a horizontal right-lateral strike-slip shear system. This is in good agreement with evidence regarding other movements along the Insubric line which can be observed in ductile and brittle shear zones.

  5. Vegetative growth and cluster development in Shiraz grapevines subjected to partial root-zone cooling

    PubMed Central

    Rogiers, Suzy Y.; Clarke, Simon J.

    2013-01-01

    Heterogeneity in root-zone temperature both vertically and horizontally may contribute to the uneven vegetative and reproductive growth often observed across vineyards. An experiment was designed to assess whether the warmed half of a grapevine root zone could compensate for the cooled half in terms of vegetative growth and reproductive development. We divided the root system of potted Shiraz grapevines bilaterally and applied either a cool or a warm treatment to each half from budburst to fruit set. Shoot growth and inflorescence development were monitored over the season. Simultaneous cooling and warming of parts of the root system decreased shoot elongation, leaf emergence and leaf expansion below that of plants with a fully warmed root zone, but not to the same extent as those with a fully cooled root zone. Inflorescence rachis length, flower number and berry number after fertilization were smaller only in those vines exposed to fully cooled root zones. After terminating the treatments, berry enlargement and the onset of veraison were slowed in those vines that had been exposed to complete or partial root-zone cooling. Grapevines exposed to partial root-zone cooling were thus delayed in vegetative and reproductive development, but the inhibition was greater in those plants whose entire root system had been cooled. PMID:24244839

  6. Improving root-zone soil moisture estimations using dynamic root growth and crop phenology

    NASA Astrophysics Data System (ADS)

    Hashemian, Minoo; Ryu, Dongryeol; Crow, Wade T.; Kustas, William P.

    2015-12-01

    Water Energy Balance (WEB) Soil Vegetation Atmosphere Transfer (SVAT) modelling can be used to estimate soil moisture by forcing the model with observed data such as precipitation and solar radiation. Recently, an innovative approach that assimilates remotely sensed thermal infrared (TIR) observations into WEB-SVAT to improve the results has been proposed. However, the efficacy of the model-observation integration relies on the model's realistic representation of soil water processes. Here, we explore methods to improve the soil water processes of a simple WEB-SVAT model by adopting and incorporating an exponential root water uptake model with water stress compensation and establishing a more appropriate soil-biophysical linkage between root-zone moisture content, above-ground states and biophysical indices. The existing WEB-SVAT model is extended to a new Multi-layer WEB-SVAT with Dynamic Root distribution (MWSDR) that has five soil layers. Impacts of plant root depth variations, growth stages and phenological cycle of the vegetation on transpiration are considered in developing stages. Hydrometeorological and biogeophysical measurements collected from two experimental sites, one in Dookie, Victoria, Australia and the other in Ponca, Oklahoma, USA, are used to validate the new model. Results demonstrate that MWSDR provides improved soil moisture, transpiration and evaporation predictions which, in turn, can provide an improved physical basis for assimilating remotely sensed data into the model. Results also show the importance of having an adequate representation of vegetation-related transpiration process for an appropriate simulation of water transfer in a complicated system of soil, plants and atmosphere.

  7. USERS MANUAL FOR THE PESTICIDE ROOT ZONE MODEL (PRZM). RELEASE 1

    EPA Science Inventory

    The Pesticide Root Zone Model (PRZM) simulates the vertical movement of pesticides in the unsaturated soil, within and below the plant root zone, and extending to the water table using generally available input data that are reasonable in spatial and temporal requirements. The mo...

  8. Water flow and solute transport in the soil-plant-atmosphere continuum: Upscaling from rhizosphere to root zone

    NASA Astrophysics Data System (ADS)

    Lazarovitch, Naftali; Perelman, Adi; Guerra, Helena; Vanderborght, Jan; Pohlmeier, Andreas

    2016-04-01

    Root water and nutrient uptake are among the most important processes considered in numerical models simulating water content and fluxes in the subsurface, as they control plant growth and production as well as water flow and nutrient transport out of the root zone. Root water uptake may lead to salt accumulation at the root-soil interface, resulting in rhizophere salt concentrations much higher than in the bulk soil. This salt accumulation is caused by soluble salt transport towards the roots by mass flow through the soil, followed by preferential adsorption of specific nutrients by active uptake, thereby excluding most other salts at the root-soil interface or in the root apoplast. The salinity buildup can lead to large osmotic pressure gradients across the roots thereby effectively reducing root water uptake. The initial results from rhizoslides (capillary paper growth system) show that sodium concentration is decreasing with distance from the root, compared with the bulk that remained more stable. When transpiration rate was decreased under high salinity levels, sodium concentration was more homogenous compared with low salinity levels. Additionally, sodium and gadolinium distributions were measured nondestructively around tomato roots using magnetic resonance imaging (MRI). This technique could also observe the root structure and water content around single roots. Results from the MRI confirm the solutes concentration pattern around roots and its relation to their initial concentration. We conclude that local water potentials at the soil-root interface differ from bulk potentials. These relative differences increase with decreasing root density, decreasing initial salt concentration and increasing transpiration rate. Furthermore, since climate may significantly influence plant response to salinity a dynamic climate-coupled salinity reduction functions are critical in while using macroscopic numerical models.

  9. Polar transport of 45Ca2+ across the elongation zone of gravistimulated roots

    NASA Technical Reports Server (NTRS)

    Lee, J. S.; Evans, M. L.

    1985-01-01

    The movement of calcium across the elongation zone of gravistimulated primary roots of maize (Zea mays L.) was measured using 45Ca2+. Radioactive calcium was applied to one side of the elongation zone about 4 mm back from the root tip and the distribution of radioactivity across the root in the region of application was determined using scintillation spectrometry. The movement of 45Ca2+ across the elongation zone was non-polar in vertically oriented roots. In gravistimulated roots the movement of label was polarized with about twice as much label moving from top to bottom as from bottom to top. A variety of treatments which interfere with gravitropism was found to eliminate the polar movement of 45Ca2+ across the elongation zone. In maize cultivars which require light for gravitropic competency, dark grown roots exhibited neither gravitropism nor polar movement of 45Ca2+ across the elongation zone. Upon illumination the roots developed but gravitropic competency and gravity-induced polar movement of 45Ca2+ across the elongation zone. Similarly, roots of light-grown seedlings lost both gravitropic competency and 45Ca2+ transport polarity upon transfer to the dark. The results indicate a close correlation between calcium movement and gravitropism in primary roots in maize.

  10. Polar transport of 45Ca2+ across the elongation zone of gravistimulated roots.

    PubMed

    Lee, J S; Evans, M L

    1985-01-01

    The movement of calcium across the elongation zone of gravistimulated primary roots of maize (Zea mays L.) was measured using 45Ca2+. Radioactive calcium was applied to one side of the elongation zone about 4 mm back from the root tip and the distribution of radioactivity across the root in the region of application was determined using scintillation spectrometry. The movement of 45Ca2+ across the elongation zone was non-polar in vertically oriented roots. In gravistimulated roots the movement of label was polarized with about twice as much label moving from top to bottom as from bottom to top. A variety of treatments which interfere with gravitropism was found to eliminate the polar movement of 45Ca2+ across the elongation zone. In maize cultivars which require light for gravitropic competency, dark grown roots exhibited neither gravitropism nor polar movement of 45Ca2+ across the elongation zone. Upon illumination the roots developed but gravitropic competency and gravity-induced polar movement of 45Ca2+ across the elongation zone. Similarly, roots of light-grown seedlings lost both gravitropic competency and 45Ca2+ transport polarity upon transfer to the dark. The results indicate a close correlation between calcium movement and gravitropism in primary roots in maize. PMID:11539697

  11. Influence of soil and climate on root zone storage capacity

    NASA Astrophysics Data System (ADS)

    Boer-Euser, Tanja; McMillan, Hilary K.; Hrachowitz, Markus; Winsemius, Hessel C.; Savenije, Hubert H. G.

    2016-03-01

    Root zone storage capacity (Sr) is an important variable for hydrology and climate studies, as it strongly influences the hydrological functioning of a catchment and, via evaporation, the local climate. Despite its importance, it remains difficult to obtain a well-founded catchment representative estimate. This study tests the hypothesis that vegetation adapts its Sr to create a buffer large enough to sustain the plant during drought conditions of a certain critical strength (with a certain probability of exceedance). Following this method, Sr can be estimated from precipitation and evaporative demand data. The results of this "climate-based method" are compared with traditional estimates from soil data for 32 catchments in New Zealand. The results show that the differences between catchments in climate-derived catchment representative Sr values are larger than for soil-derived Sr values. Using a model experiment, we show that the climate-derived Sr can better reproduce hydrological regime signatures for humid catchments; for more arid catchments, the soil and climate methods perform similarly. This makes the climate-based Sr a valuable addition for increasing hydrological understanding and reducing hydrological model uncertainty.

  12. Root zone sensors for irrigation management in intensive agriculture.

    PubMed

    Pardossi, Alberto; Incrocci, Luca; Incrocci, Giorgio; Malorgio, Fernando; Battista, Piero; Bacci, Laura; Rapi, Bernardo; Marzialetti, Paolo; Hemming, Jochen; Balendonck, Jos

    2009-01-01

    Crop irrigation uses more than 70% of the world's water, and thus, improving irrigation efficiency is decisive to sustain the food demand from a fast-growing world population. This objective may be accomplished by cultivating more water-efficient crop species and/or through the application of efficient irrigation systems, which includes the implementation of a suitable method for precise scheduling. At the farm level, irrigation is generally scheduled based on the grower's experience or on the determination of soil water balance (weather-based method). An alternative approach entails the measurement of soil water status. Expensive and sophisticated root zone sensors (RZS), such as neutron probes, are available for the use of soil and plant scientists, while cheap and practical devices are needed for irrigation management in commercial crops. The paper illustrates the main features of RZS' (for both soil moisture and salinity) marketed for the irrigation industry and discusses how such sensors may be integrated in a wireless network for computer-controlled irrigation and used for innovative irrigation strategies, such as deficit or dual-water irrigation. The paper also consider the main results of recent or current research works conducted by the authors in Tuscany (Italy) on the irrigation management of container-grown ornamental plants, which is an important agricultural sector in Italy. PMID:22574047

  13. A microwave systems approach to measuring root zone soil moisture

    NASA Technical Reports Server (NTRS)

    Newton, R. W.; Paris, J. F.; Clark, B. V.

    1983-01-01

    Computer microwave satellite simulation models were developed and the program was used to test the ability of a coarse resolution passive microwave sensor to measure soil moisture over large areas, and to evaluate the effect of heterogeneous ground covers with the resolution cell on the accuracy of the soil moisture estimate. The use of realistic scenes containing only 10% to 15% bare soil and significant vegetation made it possible to observe a 60% K decrease in brightness temperature from a 5% soil moisture to a 35% soil moisture at a 21 cm microwave wavelength, providing a 1.5 K to 2 K per percent soil moisture sensitivity to soil moisture. It was shown that resolution does not affect the basic ability to measure soil moisture with a microwave radiometer system. Experimental microwave and ground field data were acquired for developing and testing a root zone soil moisture prediction algorithm. The experimental measurements demonstrated that the depth of penetration at a 21 cm microwave wavelength is not greater than 5 cm.

  14. Nutrient removal by root zone treatment systems: a review.

    PubMed

    Sonavane, P G; Munavalli, G R; Ranade, S V

    2008-07-01

    The Root Zone Treatment System (RZTS) has been used widely for nutrient removal in European countries. In spite of having its more adaptability in tropical region like India its use to address nutrient induced issues in the country is very less. The lack of widely accepted data, non consensus of scientists over nutrient removal mechanism and inability to apply performance standards observed in other countries directly might have hampered the acceptance of this technology in India. A few technology assessment programs are being conducted in collaboration with other countries to engineer this technology but nutrient removal aspects are not essentially focused. In this context, there is need to direct lab scale research to identify potential wetland plants, bed media and comparative study of their combination specific performance under similar conditions. The field application of the data will help to understand variability in performance and disparities in the mechanism. The systems would be amended based on these studies to establish combination specific performance standards for typical Indian conditions. Maintenance strategy and optimization of design will help to foster the technology. The development strategy should give due consideration to the contributions of other countries so as to avoid repetition of work which will save time, money and efforts, and help for the real acceptance of RZTS in Indian conditions. PMID:19552081

  15. Root Zone Sensors for Irrigation Management in Intensive Agriculture

    PubMed Central

    Pardossi, Alberto; Incrocci, Luca; Incrocci, Giorgio; Malorgio, Fernando; Battista, Piero; Bacci, Laura; Rapi, Bernardo; Marzialetti, Paolo; Hemming, Jochen; Balendonck, Jos

    2009-01-01

    Crop irrigation uses more than 70% of the world’s water, and thus, improving irrigation efficiency is decisive to sustain the food demand from a fast-growing world population. This objective may be accomplished by cultivating more water-efficient crop species and/or through the application of efficient irrigation systems, which includes the implementation of a suitable method for precise scheduling. At the farm level, irrigation is generally scheduled based on the grower’s experience or on the determination of soil water balance (weather-based method). An alternative approach entails the measurement of soil water status. Expensive and sophisticated root zone sensors (RZS), such as neutron probes, are available for the use of soil and plant scientists, while cheap and practical devices are needed for irrigation management in commercial crops. The paper illustrates the main features of RZS’ (for both soil moisture and salinity) marketed for the irrigation industry and discusses how such sensors may be integrated in a wireless network for computer-controlled irrigation and used for innovative irrigation strategies, such as deficit or dual-water irrigation. The paper also consider the main results of recent or current research works conducted by the authors in Tuscany (Italy) on the irrigation management of container-grown ornamental plants, which is an important agricultural sector in Italy. PMID:22574047

  16. Rooting depth and distributions of deep-rooted plants in the 200 Area control zone of the Hanford Site

    SciTech Connect

    Klepper, E.L.; Gano, K.A.; Cadwell, L.L.

    1985-01-01

    This study was conducted to document rooting depths and distributions of deep-rooted plants common to the Hanford Site 200-Area plateau. The effort concentrated on excavating plant species suspected of having deep root systems, and species that have been reported in previous studies to contain radionuclides in above ground parts. The information obtained in this study will be useful in modeling radionuclide transport by plants and in designing covers and barriers for decommissioning low-level radioactive waste burial sites. Fourteen species including 58 individual plants were excavated to measure maximum rooting depth and root density distribution (g dry root/dm/sup 3/) through the root zone. Age and canopy volumes of shrubs were also determined. Eight of the 14 species excavated had average rooting depths of 150 cm or more. The two deepest rooted plants were antelope bitterbrush and sagebrush with average depths of 296 and 200 cm, respectively. Gray rabbitbrush had an average rooting depth of 183 cm. Summer annuals, Russian thistle and bursage, had average rooting depths of 172 and 162 cm, respectively. 7 references, 4 figures, 5 tables.

  17. Durum wheat seedlings in saline conditions: Salt spray versus root-zone salinity

    NASA Astrophysics Data System (ADS)

    Spanò, Carmelina; Bottega, Stefania

    2016-02-01

    Salinity is an increasingly serious problem with a strong negative impact on plant productivity. Though many studies have been made on salt stress induced by high NaCl concentrations in the root-zone, few data concern the response of plants to saline aerosol, one of the main constraints in coastal areas. In order to study more in depth wheat salinity tolerance and to evaluate damage and antioxidant response induced by various modes of salt application, seedlings of Triticum turgidum ssp. durum, cv. Cappelli were treated for 2 and 7 days with salt in the root-zone (0, 50 and 200 mM NaCl) or with salt spray (400 mM NaCl + 0 or 200 mM NaCl in the root-zone). Seedlings accumulated Na+ in their leaves and therefore part of their ability to tolerate high salinity seems to be due to Na+ leaf tissue tolerance. Durum wheat, confirmed as a partially tolerant plant, shows a higher damage under airborne salinity, when both an increase in TBA-reactive material (indicative of lipid peroxidation) and a decrease in root growth were recorded. A different antioxidant response was activated, depending on the type of salt supply. Salt treatment induced a depletion of the reducing power of both ascorbate and glutathione while the highest contents of proline were detected under salt spray conditions. In the short term catalase and ascorbate peroxidase co-operated with glutathione peroxidase in the scavenging of hydrogen peroxide, in particular in salt spray-treated plants. From our data, the durum wheat cultivar Cappelli seems to be sensitive to airborne salinity.

  18. Global root zone storage capacity from satellite-based evaporation data

    NASA Astrophysics Data System (ADS)

    Wang-Erlandsson, Lan; Bastiaanssen, Wim; Gao, Hongkai; Jägermeyr, Jonas; Senay, Gabriel; van Dijk, Albert; Guerschman, Juan; Keys, Patrick; Gordon, Line; Savenije, Hubert

    2016-04-01

    We present an "earth observation-based" method for estimating root zone storage capacity - a critical, yet uncertain parameter in hydrological and land surface modelling. By assuming that vegetation optimises its root zone storage capacity to bridge critical dry periods, we were able to use state-of-the-art satellite-based evaporation data computed with independent energy balance equations to derive gridded root zone storage capacity at global scale. This approach does not require soil or vegetation information, is model independent, and is in principle scale-independent. In contrast to traditional look-up table approaches, our method captures the variability in root zone storage capacity within land cover type, including in rainforests where direct measurements of root depth otherwise are scarce. Implementing the estimated root zone storage capacity in the global hydrological model STEAM improved evaporation simulation overall, and in particular during the least evaporating months in sub-humid to humid regions with moderate to high seasonality. We find that evergreen forests are able to create a large storage to buffer for extreme droughts (with a return period of up to 60 years), in contrast to short vegetation and crops (which seem to adapt to a drought return period of about 2 years). The presented method to estimate root zone storage capacity eliminates the need for soils and rooting depth information, which could be a game-changer in global land surface modelling.

  19. Estimating root zone soil moisture using near-surface observations from SMOS

    NASA Astrophysics Data System (ADS)

    Ford, T. W.; Harris, E.; Quiring, S. M.

    2014-01-01

    Satellite-derived soil moisture provides more spatially and temporally extensive data than in situ observations. However, satellites can only measure water in the top few centimeters of the soil. Root zone soil moisture is more important, particularly in vegetated regions. Therefore estimates of root zone soil moisture must be inferred from near-surface soil moisture retrievals. The accuracy of this inference is contingent on the relationship between soil moisture in the near-surface and the soil moisture at greater depths. This study uses cross correlation analysis to quantify the association between near-surface and root zone soil moisture using in situ data from the United States Great Plains. Our analysis demonstrates that there is generally a strong relationship between near-surface (5-10 cm) and root zone (25-60 cm) soil moisture. An exponential decay filter is used to estimate root zone soil moisture using near-surface soil moisture derived from the Soil Moisture and Ocean Salinity (SMOS) satellite. Root zone soil moisture derived from SMOS surface retrievals is compared to in situ soil moisture observations in the United States Great Plains. The SMOS-based root zone soil moisture had a mean R2 of 0.57 and a mean Nash-Sutcliffe score of 0.61 based on 33 stations in Oklahoma. In Nebraska, the SMOS-based root zone soil moisture had a mean R2 of 0.24 and a mean Nash-Sutcliffe score of 0.22 based on 22 stations. Although the performance of the exponential filter method varies over space and time, we conclude that it is a useful approach for estimating root zone soil moisture from SMOS surface retrievals.

  20. Electrical impedance imaging of water distribution in the root zone

    NASA Astrophysics Data System (ADS)

    Newill, P.; Karadaglić, D.; Podd, F.; Grieve, B. D.; York, T. A.

    2014-05-01

    The paper describes a technique that is proposed for imaging water transport in and around the root zone of plants using distributed measurements of electrical impedance. The technique has the potential to analyse sub-surface phenotypes, for instance drought tolerance traits in crop breeding programmes. The technical aim is to implement an automated, low cost, instrument for high-throughput screening. Ultimately the technique is targeted at in-field, on-line, measurements. For demonstration purposes the present work considers measurements on laboratory scale rhizotrons housing growing maize plants. Each rhizotron is fitted with 60 electrodes in a rectangular array. To reduce electrochemical effects the capacitively coupled contactless conductivity (C4D) electrodes have an insulating layer on the surface and the resistance of the bulk material is deduced from spectroscopic considerations. Electrical impedance is measured between pairs of electrodes to build up a two-dimensional map. A modified electrical model of such electrodes is proposed which includes the resistive and reactive components of both the insulating layer and the bulk material. Measurements taken on a parallel-plate test cell containing water confirm that the C4D technique is able to measure electrical impedance. The test cell has been used to explore the effects of water content, compaction and temperature on measurements in soil. Results confirm that electrical impedance measurements are very sensitive to moisture content. Impedance fraction changes up to 20% are observed due to compaction up to a pressure of 0.21 kg cm-2 and a temperature fraction sensitivity of about 2%/°C. The effects of compaction and temperature are most significant under dry conditions. Measurements on growing maize reveal the changes in impedance across the rhizotron over a period of several weeks. Results are compared to a control vessel housing only soil.

  1. Chelate-Assisted Heavy Metal Movement Through the Root Zone

    NASA Astrophysics Data System (ADS)

    Kirkham, M.; Madrid, F.; Liphadzi, M. S.

    2001-12-01

    Chelating agents are added to soil as a means to mobilize heavy metals for plant uptake during phytoremediation. Yet almost no studies follow the displacement of heavy metals through the vadose zone following solubilization with chelating agents. The objective of this work was to determine the movement of heavy metals through the soil profile and their absorption by barley (Hordeum vulgare L.) in a soil amended with biosolids and in the presence of a chelating agent (EDTA). Twelve columns 75 cm in height and 17 in diameter were packed with a Haynie very fine sandy loam (coarse-silty, mixed, calcareous, mesic Mollic Udifluvents) and watered with liquid biosolids applied at the surface at a rate of 120 kg N/ha. Three weeks after plants germinated, soil was irrigated with a solution of the disodium salt of EDTA added at a rate of 0.5 g/kg soil. Four treatments were imposed: columns with no plants and no EDTA; columns with no plants plus EDTA; columns with plants and no EDTA; and columns with plants and EDTA. Columns were watered intensively for 35 days until two pore volumes of water had been added, and the leachates were collected daily. With or without plants, columns with EDTA had lower total concentrations of Cu, Zn, Cd, Ni, and Pb in the surface 20 cm than columns without EDTA. Concentrations of the heavy metals in this layer were not afffected by the presence of roots. Iron in leachate was followed as an indicator metal for movement to groundwater. No iron appeared in the leachate without EDTA, either in the columns with plants or without plants. The peak concentration of iron in the leachate occurred three days earlier in the columns without plants and EDTA compared to the columns with plants and EDTA. The results indicated the importance of vegetation on retarding heavy metal leaching to groundwater during chelate-facilitated phytoremediation.

  2. The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots.

    PubMed

    York, Larry M; Carminati, Andrea; Mooney, Sacha J; Ritz, Karl; Bennett, Malcolm J

    2016-06-01

    Despite often being conceptualized as a thin layer of soil around roots, the rhizosphere is actually a dynamic system of interacting processes. Hiltner originally defined the rhizosphere as the soil influenced by plant roots. However, soil physicists, chemists, microbiologists, and plant physiologists have studied the rhizosphere independently, and therefore conceptualized the rhizosphere in different ways and using contrasting terminology. Rather than research-specific conceptions of the rhizosphere, the authors propose a holistic rhizosphere encapsulating the following components: microbial community gradients, macroorganisms, mucigel, volumes of soil structure modification, and depletion or accumulation zones of nutrients, water, root exudates, volatiles, and gases. These rhizosphere components are the result of dynamic processes and understanding the integration of these processes will be necessary for future contributions to rhizosphere science based upon interdisciplinary collaborations. In this review, current knowledge of the rhizosphere is synthesized using this holistic perspective with a focus on integrating traditionally separated rhizosphere studies. The temporal dynamics of rhizosphere activities will also be considered, from annual fine root turnover to diurnal fluctuations of water and nutrient uptake. The latest empirical and computational methods are discussed in the context of rhizosphere integration. Clarification of rhizosphere semantics, a holistic model of the rhizosphere, examples of integration of rhizosphere studies across disciplines, and review of the latest rhizosphere methods will empower rhizosphere scientists from different disciplines to engage in the interdisciplinary collaborations needed to break new ground in truly understanding the rhizosphere and to apply this knowledge for practical guidance. PMID:26980751

  3. Actin Cytoskeleton-Based Plant Synapse as Gravitransducer in the Transition Zone of the Root Apex

    NASA Astrophysics Data System (ADS)

    Baluska, Frantisek; Barlow, Peter; Volkmann, Dieter; Mancuso, Stefano

    The actin cytoskeleton was originally proposed to act as the signal transducer in the plant gravity sensory-motoric circuit. Surprisingly, however, several studies have documented that roots perfom gravisensing and gravitropism more effectively if exposed to diverse anti-F-actin drugs. Our study, using decapped maize root apices, has revealed that depolymerization of F-actin stimulates gravity perception in cells of the transition zone where root gravitropism is initiated (Mancuso et al. 2006). It has been proposed (Balǔka et al. 2005, 2009a) that s the non-growing adhesive end-poles, enriched with F-actin and myosin VIII, and active in endocytic recycling of both PIN transporters and cell wall pectins cross-linked with calcium and boron, act as the gravisensing domains, and that these impinge directly upon the root motoric responses via control of polar auxin transport. This model suggests that mechanical asymmetry at these plant synapses determines vectorial gravity-controlled auxin transport. Due to the gravity-imposed mechanical load upon the protoplast, a tensional stress is also imposed upon the plasma membrane of the physically lower synaptic cell pole. This stress is then relieved by shifting the endocytosis-exocytosis balance towards exocytosis (Balǔka et al. s 2005, 2009a,b). This `Synaptic Auxin Secretion' hypothesis does not conflict with the `Starch Statolith' hypothesis, which is based on amyloplast sedimentation. In fact, the `Synaptic Auxin Secretion' hypothesis has many elements which allow its unification with the Starch-Statolith model (Balǔka et al. 2005, 2009a,b). s References Balǔka F, Volkmann D, Menzel D (2005) Plant synapses: actin-based adhesion s domains for cell-to-cell communication. Trends Plant Sci 10: 106-111 Balǔka F, Schlicht M, s Wan Y-L, Burbach C, Volkmann D (2009a) Intracellular domains and polarity in root apices: from synaptic domains to plant neurobiology. Nova Acta Leopoldina 96: 103-122 Balǔka s F, Mancuso S

  4. Mapping gene activity of Arabidopsis root hairs

    PubMed Central

    2013-01-01

    Background Quantitative information on gene activity at single cell-type resolution is essential for the understanding of how cells work and interact. Root hairs, or trichoblasts, tubular-shaped outgrowths of specialized cells in the epidermis, represent an ideal model for cell fate acquisition and differentiation in plants. Results Here, we provide an atlas of gene and protein expression in Arabidopsis root hair cells, generated by paired-end RNA sequencing and LC/MS-MS analysis of protoplasts from plants containing a pEXP7-GFP reporter construct. In total, transcripts of 23,034 genes were detected in root hairs. High-resolution proteome analysis led to the reliable identification of 2,447 proteins, 129 of which were differentially expressed between root hairs and non-root hair tissue. Dissection of pre-mRNA splicing patterns showed that all types of alternative splicing were cell type-dependent, and less complex in EXP7-expressing cells when compared to non-root hair cells. Intron retention was repressed in several transcripts functionally related to root hair morphogenesis, indicative of a cell type-specific control of gene expression by alternative splicing of pre-mRNA. Concordance between mRNA and protein expression was generally high, but in many cases mRNA expression was not predictive for protein abundance. Conclusions The integrated analysis shows that gene activity in root hairs is dictated by orchestrated, multilayered regulatory mechanisms that allow for a cell type-specific composition of functional components. PMID:23800126

  5. The Evolution of Root Zone Storage Capacity after Land Use Change

    NASA Astrophysics Data System (ADS)

    Nijzink, Remko C.; Hutton, Christopher; Pechlivanidis, Ilias; Capell, René; Arheimer, Berit; Wagener, Thorsten; Savenije, Hubert H. G.; Hrachowitz, Markus

    2016-04-01

    Root zone storage capacity forms a crucial parameter in ecosystem functioning as it is the key parameter that determines the partitioning between runoff and transpiration. There is increasing evidence from several case studies for specific plants that vegetation adapts to the critical situation of droughts. For example, trees will, on the long term, try to improve their internal hydraulic conductivity after droughts, for example by allocating more biomass for roots. In spite of this understanding, the water storage capacity in the root zone is often treated as constant in hydrological models. In this study, it was hypothesized that root zone storage capacities are altered by deforestation and the regrowth of the ecosystem. Three deforested sub catchments as well as not affected, nearby control catchments of the experimental forests of HJ Andrews and Hubbard Brook were selected for this purpose. Root zone storage capacities were on the one hand estimated by a climate-based approach similar to Gao et al. (2014), making use of simple water balance considerations to determine the evaporative demand of the system. In this way, the maximum deficit between evaporative demand and precipitation allows a robust estimation of the root zone storage capacity. On the other hand, three conceptual hydrological models (FLEX, HYPE, HYMOD) were calibrated in a moving window approach for all catchments. The obtained model parameter values representing the root zone storage capacities of the individual catchments for each moving window period were then compared to the estimates derived from climate data for the same periods. Model- and climate-derived estimates of root zone storage capacities both showed a similar evolution. In the deforested catchments, considerable reductions of the root zone storage capacities, compared to the pre-treatment situation and control catchments, were observed. In addition, the years after forest clearing were characterized by a gradual recovery of the

  6. A higher sink competitiveness of the rooting zone and invertases are involved in dark stimulation of adventitious root formation in Petunia hybrida cuttings.

    PubMed

    Klopotek, Yvonne; Franken, Philipp; Klaering, Hans-Peter; Fischer, Kerstin; Hause, Bettina; Hajirezaei, Mohammad-Reza; Druege, Uwe

    2016-02-01

    The contribution of carbon assimilation and allocation and of invertases to the stimulation of adventitious root formation in response to a dark pre-exposure of petunia cuttings was investigated, considering the rooting zone (stem base) and the shoot apex as competing sinks. Dark exposure had no effect on photosynthesis and dark respiration during the subsequent light period, but promoted dry matter partitioning to the roots. Under darkness, higher activities of cytosolic and vacuolar invertases were maintained in both tissues when compared to cuttings under light. This was partially associated with higher RNA levels of respective genes. However, activity of cell wall invertases and transcript levels of one cell wall invertase isogene increased specifically in the stem base during the first two days after cutting excision under both light and darkness. During five days after excision, RNA accumulation of four invertase genes indicated preferential expression in the stem base compared to the apex. Darkness shifted the balance of expression of one cytosolic and two vacuolar invertase genes towards the stem base. The results indicate that dark exposure before planting enhances the carbon sink competitiveness of the rooting zone and that expression and activity of invertases contribute to the shift in carbon allocation. PMID:26795147

  7. Serpentine in active subduction zones

    NASA Astrophysics Data System (ADS)

    Reynard, Bruno

    2013-09-01

    Serpentinization is a key phenomenon for understanding the geodynamics of subduction zones in the 10-200 km depth range. Serpentines are a major water carrier, and their rheological properties have a strong influence on deformation partitioning and seismicity at depths. I review experimental investigations that have been conducted on serpentines, with emphasis on the large body of data acquired over the past decade. Determinations of physical properties at the pressure and temperature conditions of subductions allow interpreting geophysical data in active subduction in terms of mineralogy and petrology, and to link the presence of serpentinites with deformation and fluid circulation. The fluid budget can be partially constrained from geophysical data. Elasticity data provide a quantitative basis for mapping serpentinization in the mantle wedge and slab from seismic tomography. Anisotropy suggests the existence of thin serpentinite channels above the plate interface, that account for mechanical decoupling inferred from down-dip limit of the seismogenic zone and heat flow. Strain-rate dependent rheology of antigorite serpentine is consistent with stable deformation of this thin layer or channel over timescales ranging from those of the seismic cycle to those of thermal equilibration and exhumation of high-pressure rocks, and with the geological record of subduction-related deformation. Circulation of serpentinizing fluids depends on the permeability structure, and is imaged by electrical conductivity tomography. It could be controlled by fracturing in the undeformed cold nose of the mantle wedge, and by plastic deformation along the plate interface. Fluid migration mechanisms are similar to those inferred from petrological and geochemical data on exhumed serpentinites. Estimation of the fluid budget associated with serpentine formation will rely on numerical simulations for which coupling of kinetics of hydration and dehydration at scales ranging from grain size up

  8. Cadmium re-distribution from pod and root zones and accumulation by peanut (Arachis hypogaea L.).

    PubMed

    Wang, Kairong; Song, Ningning; Zhao, Qiaoqiao; van der Zee, S E A T M

    2016-01-01

    Peanut (Arachis hypogaea L.) genotypes may differ greatly with regard to cadmium (Cd) accumulation, but the underlying mechanisms remain unclear. To determine the key factors that may contribute to Cd re-distribution and accumulation in peanut genotypes with different Cd accumulating patterns, a split-pot soil experiment was conducted with three common Chinese peanut cultivars (Fenghua-6, Huayu-20, and Huayu-23). The growth medium was separated into pod and root zones with varied Cd concentrations in each zone to determine the re-distribution of Cd after it is taken up via different routes. The peanut cultivars were divided into two groups based on Cd translocation efficiency as follows: (1) high internal Cd translocation efficiency cultivar (Fenghua-6) and (2) low internal Cd translocation efficiency cultivars (Huayu-20 and Huayu-23). Compared with Fenghua-6, low Cd translocation cultivars Huayu-20 and Huayu-23 showed higher biomass production, especially in stems and leaves, leading to dilution of metal concentrations. Results also showed that Cd concentration in roots increased significantly with increasing Cd concentrations in soils when Cd was applied in the root zone. However, there were no significant differences in the root Cd concentrations between different pod zone Cd treatments and the control, suggesting that root uptake, rather than pod uptake, is responsible for Cd accumulation in the roots of peanuts. Significant differences of Cd distribution were observed between pod and root zone Cd exposure treatments. The three peanut cultivars revealed higher kernel over total Cd fractions for pod than for root zone Cd exposure if only extra applied Cd was considered. This suggests that uptake through peg and pod shell might, at least partially, be responsible for the variation in Cd re-distribution and accumulation among peanut cultivars. Cd uptake by plants via two routes (i.e., via roots and via pegs and pods, respectively) and internal Cd translocation

  9. Influence of Topography on Root Processes in the Shale Hills-Susquehanna Critical Zone Observatory

    NASA Astrophysics Data System (ADS)

    Eissenstat, D. M.; Orr, A. S.; Adams, T. S.; Chen, W.; Gaines, K.

    2015-12-01

    Topography can strongly influence root and associated mycorrhizal fungal function in the Critical Zone. In the Shale Hills-Susquehanna Critical Zone Observatory (SSCZO), soil depths range from more than 80 cm deep in the valley floor to about 25 cm on the ridge top. Tree height varies from about 28 m tall at the valley floor to about 17 m tall at the ridge top. Yet total absorptive root length to depth of refusal is quite similar across the hillslope. We find root length density to vary as much at locations only 1-2 m apart as at scales of hundreds of meters across the catchment. Tree community composition also varies along the hillslope, including tree species that vary widely in thickness of their absorptive roots and type of mycorrhiza (arbuscular mycorrhizal and ectomycorrhizal). Studies of trees in a common garden of 16 tree species and in forests near SSCZO indicate that both root morphology and mycorrhizal type can strongly influence root foraging. Species that form thick absorptive roots appear more dependent on mycorrhizal fungi and thin-root species forage more by root proliferation. Ectomycorrhizal trees show more variation in foraging precision (proliferation in a nutrient-rich patch relative to that in an unenriched patch) of their mycorrhizal hyphae whereas AM trees show more variation in foraging precision by root proliferation, indicating alternative strategies among trees of different mycorrhizal types. Collectively, the results provide insight into how topography can influence foraging belowground.

  10. Root Hair Deformation Activity of Nodulation Factors and Their Fate on Vicia sativa.

    PubMed Central

    Heidstra, R.; Geurts, R.; Franssen, H.; Spaink, H. P.; Van Kammen, A.; Bisseling, T.

    1994-01-01

    We used a semiquantitative root hair deformation assay for Vicia sativa (vetch) to study the activity of Rhizobium leguminosarum bv viciae nodulation (Nod) factors. Five to 10 min of Nod factor-root interaction appears to be sufficient to induce root hair deformation. The first deformation is visible within 1 h, and after 3 h about 80% of the root hairs in a small susceptible zone of the root are deformed. This zone encompasses root hairs that have almost reached their maximal size. The Nod factor accumulates preferentially to epidermal cells of the young part of the root, but is not restricted to the susceptible zone. In the interaction with roots, the glucosamine backbone of Nod factors is shortened, presumably by chitinases. NodRlv-IV(C18:4,Ac) is more stable than NodRlv-V(C18:4,Ac). No correlation was found between Nod factor degradation and susceptibility. Degradation occurs both in the susceptible zone and in the mature zone. Moreover, degradation is not affected by NH4NO3 and is similar in vetch and in the nonhost alfalfa (Medicago sativa). PMID:12232242

  11. Growth and physiological responses of neotropical mangrove seedlings to root zone hypoxia.

    PubMed

    McKee, Karen L.

    1996-01-01

    Seedlings of Rhizophora mangle L., Avicennia germinans (L.) Stearn., and Laguncularia racemosa (L.) Gaertn. f. were cultured in aerated or N(2)-purged solution for 12 weeks to assess their relative responses to low oxygen tensions. All three species responded to low oxygen treatment by modifying physiological and morphological patterns to decrease carbon loss by root respiration. However, the extent to which seedling physiology and morphology were altered by low oxygen treatment differed among species. Maintenance of root oxygen concentrations, root respiration rates and root extension rates by R. mangle demonstrated an ability to avoid low oxygen stress with minimal changes in root morphology and physiology. In contrast, oxygen concentrations in A. germinans and L. racemosa roots declined from 16 to 5% or lower within 6 h of treatment. Root hypoxia led to significant decreases in respiration rates of intact root systems (31 and 53% below controls) and root extension rates (38 and 76% below controls) by A. germinans and L. racemosa, respectively, indicating a greater vulnerability of these species to low oxygen tensions in the root zone compared with R. mangle. I conclude that the relative performance of mangrove seedlings growing in anaerobic soils is influenced by interspecific differences in root aeration and concomitant effects on root morphology and physiology. PMID:14871780

  12. Plasma membrane proteomics in the maize primary root growth zone: novel insights into root growth adaptation to water stress.

    PubMed

    Voothuluru, Priyamvada; Anderson, Jeffrey C; Sharp, Robert E; Peck, Scott C

    2016-09-01

    Previous work on maize (Zea mays L.) primary root growth under water stress showed that cell elongation is maintained in the apical region of the growth zone but progressively inhibited further from the apex. These responses involve spatially differential and coordinated regulation of osmotic adjustment, modification of cell wall extensibility, and other cellular growth processes that are required for root growth under water-stressed conditions. As the interface between the cytoplasm and the apoplast (including the cell wall), the plasma membrane likely plays critical roles in these responses. Using a simplified method for enrichment of plasma membrane proteins, the developmental distribution of plasma membrane proteins was analysed in the growth zone of well-watered and water-stressed maize primary roots. The results identified 432 proteins with differential abundances in well-watered and water-stressed roots. The majority of changes involved region-specific patterns of response, and the identities of the water stress-responsive proteins suggest involvement in diverse biological processes including modification of sugar and nutrient transport, ion homeostasis, lipid metabolism, and cell wall composition. Integration of the distinct, region-specific plasma membrane protein abundance patterns with results from previous physiological, transcriptomic and cell wall proteomic studies reveals novel insights into root growth adaptation to water stress. PMID:27341663

  13. The Regulation of Growth in the Distal Elongation Zone of Maize Roots

    NASA Technical Reports Server (NTRS)

    Evans, Michael L.

    1998-01-01

    The major goals of the proposed research were 1. To develop specialized software for automated whole surface root expansion analysis and to develop technology for controlled placement of surface electrodes for analysis of relationships between root growth and root pH and electrophysiological properties. 2. To measure surface pH patterns and determine the possible role of proton flux in gravitropic sensing or response, and 3. To determine the role of auxin transport in establishment of patterns of proton flux and electrical gradients during the gravitropic response of roots with special emphasis on the role of the distal elongation zone in the early phases of the gravitropic response.

  14. Estimating field scale root zone soil moisture using the cosmic-ray neutron probe

    NASA Astrophysics Data System (ADS)

    Peterson, A. M.; Helgason, W. D.; Ireson, A. M.

    2015-12-01

    Many practical hydrological, meteorological and agricultural management problems require estimates of soil moisture with an areal footprint equivalent to "field scale", integrated over the entire root zone. The cosmic-ray neutron probe is a promising instrument to provide field scale areal coverage, but these observations are shallow and require depth scaling in order to be considered representative of the entire root zone. A study to identify appropriate depth-scaling techniques was conducted at a grazing pasture site in central Saskatchewan, Canada over a two year period. Area-averaged soil moisture was assessed using a cosmic-ray neutron probe. Root zone soil moisture was measured at 21 locations within the 5002 m2 area, using a down-hole neutron probe. The cosmic-ray neutron probe was found to provide accurate estimates of field scale surface soil moisture, but accounted for less than 40 % of the seasonal change in root zone storage due to its shallow measurement depth. The root zone estimation methods evaluated were: (1) the coupling of the cosmic-ray neutron probe with a time stable neutron probe monitoring location, (2) coupling the cosmic-ray neutron probe with a representative landscape unit monitoring approach, and (3) convolution of the cosmic-ray neutron probe measurements with the exponential filter. The time stability method provided the best estimate of root zone soil moisture (RMSE = 0.004 cm3 cm-3), followed by the exponential filter (RMSE = 0.012 cm3 cm-3). The landscape unit approach, which required no calibration, had a negative bias but estimated the cumulative change in storage reasonably. The feasibility of applying these methods to field sites without existing instrumentation is discussed. It is concluded that the exponential filter method has the most potential for estimating root zone soil moisture from cosmic-ray neutron probe data.

  15. Estimating field-scale root zone soil moisture using the cosmic-ray neutron probe

    NASA Astrophysics Data System (ADS)

    Peterson, Amber M.; Helgason, Warren D.; Ireson, Andrew M.

    2016-04-01

    Many practical hydrological, meteorological, and agricultural management problems require estimates of soil moisture with an areal footprint equivalent to field scale, integrated over the entire root zone. The cosmic-ray neutron probe is a promising instrument to provide field-scale areal coverage, but these observations are shallow and require depth-scaling in order to be considered representative of the entire root zone. A study to identify appropriate depth-scaling techniques was conducted at a grazing pasture site in central Saskatchewan, Canada over a 2-year period. Area-averaged soil moisture was assessed using a cosmic-ray neutron probe. Root zone soil moisture was measured at 21 locations within the 500 m × 500 m study area, using a down-hole neutron probe. The cosmic-ray neutron probe was found to provide accurate estimates of field-scale surface soil moisture, but measurements represented less than 40 % of the seasonal change in root zone storage due to its shallow measurement depth. The root zone estimation methods evaluated were: (a) the coupling of the cosmic-ray neutron probe with a time-stable neutron probe monitoring location, (b) coupling the cosmic-ray neutron probe with a representative landscape unit monitoring approach, and (c) convolution of the cosmic-ray neutron probe measurements with the exponential filter. The time stability method provided the best estimate of root zone soil moisture (RMSE = 0.005 cm3 cm-3), followed by the exponential filter (RMSE = 0.014 cm3 cm-3). The landscape unit approach, which required no calibration, had a negative bias but estimated the cumulative change in storage reasonably. The feasibility of applying these methods to field sites without existing instrumentation is discussed. Based upon its observed performance and its minimal data requirements, it is concluded that the exponential filter method has the most potential for estimating root zone soil moisture from cosmic-ray neutron probe data.

  16. An in situ approach to detect tree root ecology: linking ground-penetrating radar imaging to isotope-derived water acquisition zones

    PubMed Central

    Isaac, Marney E; Anglaaere, Luke C N

    2013-01-01

    Tree root distribution and activity are determinants of belowground competition. However, studying root response to environmental and management conditions remains logistically challenging. Methodologically, nondestructive in situ tree root ecology analysis has lagged. In this study, we tested a nondestructive approach to determine tree coarse root architecture and function of a perennial tree crop, Theobroma cacao L., at two edaphically contrasting sites (sandstone and phyllite–granite derived soils) in Ghana, West Africa. We detected coarse root vertical distribution using ground-penetrating radar and root activity via soil water acquisition using isotopic matching of δ18O plant and soil signatures. Coarse roots were detected to a depth of 50 cm, however, intraspecifc coarse root vertical distribution was modified by edaphic conditions. Soil δ18O isotopic signature declined with depth, providing conditions for plant–soil δ18O isotopic matching. This pattern held only under sandstone conditions where water acquisition zones were identifiably narrow in the 10–20 cm depth but broader under phyllite–granite conditions, presumably due to resource patchiness. Detected coarse root count by depth and measured fine root density were strongly correlated as were detected coarse root count and identified water acquisition zones, thus validating root detection capability of ground-penetrating radar, but exclusively on sandstone soils. This approach was able to characterize trends between intraspecific root architecture and edaphic-dependent resource availability, however, limited by site conditions. This study successfully demonstrates a new approach for in situ root studies that moves beyond invasive point sampling to nondestructive detection of root architecture and function. We discuss the transfer of such an approach to answer root ecology questions in various tree-based landscapes. PMID:23762519

  17. Effects of root-zone acidity on utilization of nitrate and ammonium in tobacco plants

    NASA Technical Reports Server (NTRS)

    Henry, L. T.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

    1989-01-01

    Tobacco (Nicotiana tabacum L., cv. 'Coker 319') plants were grown for 28 days in flowing nutrient culture containing either 1.0 mM NO3- or 1.0 mM NH4+ as the nitrogen source in a complete nutrient solution. Acidities of the solutions were controlled at pH 6.0 or 4.0 for each nitrogen source. Plants were sampled at intervals of 6 to 8 days for determination of dry matter and nitrogen accumulation. Specific rates of NO3- or NH4+ uptake (rate of uptake per unit root mass) were calculated from these data. Net photosynthetic rates per unit leaf area were measured on attached leaves by infrared gas analysis. When NO3- [correction of NO-] was the sole nitrogen source, root growth and nitrogen uptake rate were unaffected by pH of the solution, and photosynthetic activity of leaves and accumulation of dry matter and nitrogen in the whole plant were similar. When NH4+ was the nitrogen source, photosynthetic rate of leaves and accumulation of dry matter and nitrogen in the whole plant were not statistically different from NO3(-) -fed plants when acidity of the solution was controlled at pH 6.0. When acidity for NH4(+) -fed plants was increased to pH 4.0, however, specific rate of NH4+ uptake decreased by about 50% within the first 6 days of treatment. The effect of acidity on root function was associated with a decreased rate of accumulation of nitrogen in shoots that was accompanied by a rapid cessation of leaf development between days 6 and 13. The decline in leaf growth rate of NH4(+) -fed plants at pH 4.0 was followed by reductions in photosynthetic rate per unit leaf area. These responses of NH4(+) -fed plants to increased root-zone acidity are characteristic of the sequence of responses that occur during onset of nitrogen stress.

  18. [Simulation of soil water dynamics in triploid Populus tomentosa root zone under subsurface drip irrigation].

    PubMed

    Xi, Ben-Ye; Jia, Li-Ming; Wang, Ye; Li, Guang-De

    2011-01-01

    Based on the observed data of triploid Populus tomentosa root distribution, a one-dimensional root water uptake model was proposed. Taking the root water uptake into account, the soil water dynamics in triploid P. tomentosa root zone under subsurface drip irrigation was simulated by using HYDRUS model, and the results were validated with field experiment. Besides, the HYDRUS model was used to study the effects of various irrigation technique parameters on soil wetting patterns. The RMAE for the simulated soil water content by the end of irrigation and approximately 24 h later was 7.8% and 6.0%, and the RMSE was 0.036 and 0.026 cm3 x cm(-3), respectively, illustrating that the HYDRUS model performed well in simulating the short-term soil water dynamics in triploid P. tomentosa root zone under drip irrigation, and the root water uptake model was reasonable. Comparing with 2 and 4 L x h(-1) of drip discharge and continuous irrigation, both the 1 L x h(-1) of drip discharge and the pulsed irrigation with water applied intermittently in 30 min periods could increase the volume of wetted soil and reduce deep percolation. It was concluded that the combination of 1 L x h(-1) of drip discharge and pulsed irrigation should be the first choice when applying drip irrigation to triploid P. tomentosa root zone at the experiment site. PMID:21548283

  19. [Identification of Azospirillum genus bacteria isolated from the spring wheat root zone].

    PubMed

    Kopylov, Ie P; Spyrydonov, V H; Patyka, V P

    2009-01-01

    Bacteria with high N2-fixing activity were isolated from the root zone of spring wheat grown on leach chernozem and soddy podzolic soil in Ukrainian marshy woodlands. They were characterized by phenotypic signs and investigated with the help of molecular-genetic methods. On the basis of diagnostic signs the investigated strains were referred to Azospirillum brasilense from Azospirillum genus. Their 3'- and 5'-thermal 16S RNA hypervariable sites with length from 373 to 395 nucleotides were amplified and sequenced. The comparative analysis of results confirmed the 100% identity of 16S RNA sequences from investigated bacteria with the same sequences of A. brasilense from Gene Bank database. Thus the results of sequence analysis agree with results obtained during the investigation of phenotypic signs. PMID:19938589

  20. Antidiabetic activity of Helicteres angustifolia root.

    PubMed

    Hu, Xuansheng; Cheng, Delin; Zhang, Zhenya

    2016-06-01

    Context The root of Helicteres angustifolia L. (Sterculiaceae) has been used as folk herbal drug to treat cancer, bacterial infections, inflammatory, and flu in China. However, there is no report on its antidiabetic activity. Objective This study evaluates the antidiabetic activity of ethanol extract from H. angustifolia root. Materials and methods The promoting effect of H. angustifolia root ethanol extract (25, 50, and 100 μg/mL) on glucose uptake was evaluated using HepG2 cell, differentiated C2C12 myotubes, and differentiated 3T3-L1 adipocytes. The antidiabetic activity of the extract was assessed in vivo using STZ-induced diabetic rats by orally administration of the extract (200 and 400 mg/kg b.w.) once per day for 28 d. Blood glucose, TG, TC, TP, HDL-C, UA, BUN, AST, ALT, insulin, and HOMA-IR were analyzed. Results The results showed that the extract increased glucose uptake in C2C12 myotubes and 3T3-L1 adipocytes with an IC50 value of 79.95 and 135.96 μg/mL, respectively. And about 12%, 19%, and 10% (p < 0.05) in HepG2 cells when compared with the control at the concentration of 25, 50, and 100 μg/mL, respectively. After 28 days' treatment with the extract, significant reduction was observed in blood glucose, HOMA-IR, TC, TG, UA, BUN, AST, and ALT levels, while the levels of TP and HDL cholesterol increased. Discussion and conclusion These results suggest that H. angustifolia root ethanol extract possess potent antidiabetic activity, which is the first report on antidiabetic activity of this plant. PMID:26866383

  1. Antihistaminic activity of Clitoria ternatea L. roots

    PubMed Central

    Taur, Dnyaneshwar J; Patil, Ravindra Y

    2010-01-01

    Clonidine, a α2 adrenoreceptor agonist induces dose dependent catalepsy in mice, which was inhibited by histamine H1 receptor antagonists but not by H2 receptor antagonist. Clonidine releases histamine from mast cells which is responsible for different asthmatic conditions. Clitoria ternatea L. (Family: Fabaceae) is a perimial twing herb. The roots have anti-inflammatory properties and are useful in severe bronchitis, asthma. In present study ethanol extract of Clitoria ternatea root (ECTR) at doses 100, 125 and 150 mg/kg i.p were evaluated for antihistaminic activity using clonidine and haloperidol induced catalepsy in mice. Finding of investigation showed that chlorpheniramine maleate (CPM) and ECTR inhibit clonidine induced catalepsy significantly P < 0.001 when compare to control group, while CPM and ECTR fail to inhibit haloperidol induced catalepsy. Present study concludes that ECTR possesses antihistaminic activity PMID:24826001

  2. Antihistaminic activity of Clitoria ternatea L. roots.

    PubMed

    Taur, Dnyaneshwar J; Patil, Ravindra Y

    2010-12-01

    Clonidine, a α2 adrenoreceptor agonist induces dose dependent catalepsy in mice, which was inhibited by histamine H1 receptor antagonists but not by H2 receptor antagonist. Clonidine releases histamine from mast cells which is responsible for different asthmatic conditions. Clitoria ternatea L. (Family: Fabaceae) is a perimial twing herb. The roots have anti-inflammatory properties and are useful in severe bronchitis, asthma. In present study ethanol extract of Clitoria ternatea root (ECTR) at doses 100, 125 and 150 mg/kg i.p were evaluated for antihistaminic activity using clonidine and haloperidol induced catalepsy in mice. Finding of investigation showed that chlorpheniramine maleate (CPM) and ECTR inhibit clonidine induced catalepsy significantly P < 0.001 when compare to control group, while CPM and ECTR fail to inhibit haloperidol induced catalepsy. Present study concludes that ECTR possesses antihistaminic activity. PMID:24826001

  3. Heat and mass transfer in the vadose zone with plant roots

    NASA Astrophysics Data System (ADS)

    Sung, Kijune; Yavuz, Corapcioglu M.; Drew, Malcolm C.

    2002-07-01

    The vadose zone is the intermediate medium between the atmosphere and groundwater. The modeling of the processes taking place in the vadose zone needs different approaches to those needed for groundwater transport problems because of the marked changes in environmental conditions affecting the vadose zone. A mathematical model to simulate the water flow, and the fate and transport of recalcitrant contaminants was developed, which could be applied to various bioremediation methods such as phytoremediation and natural attenuation in the vadose zone. Two-phase flow equations and heat flux models were used to develop the model. Surface energy balance equations were used to estimate soil surface temperature, and root growth and root distribution models were incorporated to represent the special contribution of plant roots in the vegetated soils. Interactions between the roots and environmental conditions such as temperature and water content were treated by incorporating a feedback mechanism that made allowance for the effects of water and temperature stresses on root distribution and water uptake by roots. In conducting the modeling study, Johnson grass and unplanted soil were simulated to compare the effect of root water uptake on soil water content. After the numerical experiments were conducted to investigate model behavior, the proposed model was applied to estimate actual water flow and heat flow in field lysimeter experiments over a 1-year period. Root growth and distribution for Johnson grass and rye grass were simulated to compare the warm season grass to the cold season grass. A significant agreement was observed between the simulations and measured data.

  4. Modeling Transient Root-zone Soil Moisture Dichotomies in Landscapes with Intermixed Land Covers

    NASA Astrophysics Data System (ADS)

    Patrignani, A.; Ochsner, T. E.

    2015-12-01

    Although large-scale in situ soil moisture monitoring networks are becoming increasingly valuable research tools, deficiencies of many existing networks include the small spatial support of each station, the low spatial density of stations, and the almost exclusive deployment of stations in grassland vegetation. These grassland soil moisture observations may not adequately represent the real soil moisture patterns in landscapes with intermixed land cover types. The objectives of this study were i) to compare root-zone soil moisture dynamics of two dominant vegetation types across Oklahoma, grassland (observed) and winter wheat cropland (simulated); ii) to relate the soil moisture dynamics of grassland and cropland vegetation using an artificial neural network (ANN) as a transfer function; and iii) to use the resulting ANN to estimate the soil moisture spatial patterns for a landscape of intermixed grassland and wheat cropland. Root-zone soil moisture was represented by plant available water (PAW) in the top 0.8 m of the soil profile. PAW under grassland was calculated from 18 years of soil moisture observations at 78 stations of the Oklahoma Mesonet, whereas PAW under winter wheat was simulated for the same 78 locations using a soil water balance model. Then, we trained an ANN to reproduce the simulated PAW under winter wheat using only seven inputs: day of the year, latitude and longitude, measured PAW under grassland, and percent sand, silt, and clay. The resulting ANN was used, along with grassland soil moisture observations, to estimate the detailed soil moisture pattern for a 9x9 km2 Soil Moisture Active Passive (SMAP) grid cell. The seasonal dynamics of root-zone PAW for grassland and winter wheat were strongly asynchronous, so grassland soil moisture observations rarely reflect cropland soil moisture conditions in the region. The simple ANN approach facilitated efficient and accurate prediction of the simulated PAW under winter wheat, RMSE = 24 mm, using

  5. The SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) Product

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf; Crow, Wade; Koster, Randal; Kimball, John

    2010-01-01

    The Soil Moisture Active and Passive (SMAP) mission is being developed by NASA for launch in 2013 as one of four first-tier missions recommended by the U.S. National Research Council Committee on Earth Science and Applications from Space in 2007. The primary science objectives of SMAP are to enhance understanding of land surface controls on the water, energy and carbon cycles, and to determine their linkages. Moreover, the high resolution soil moisture mapping provided by SMAP has practical applications in weather and seasonal climate prediction, agriculture, human health, drought and flood decision support. In this paper we describe the assimilation of SMAP observations for the generation of the planned SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) product. The SMAP mission makes simultaneous active (radar) and passive (radiometer) measurements in the 1.26-1.43 GHz range (L-band) from a sun-synchronous low-earth orbit. Measurements will be obtained across a 1000 km wide swath using conical scanning at a constant incidence angle (40 deg). The radar resolution varies from 1-3 km over the outer 70% of the swath to about 30 km near the center of the swath. The radiometer resolution is 40 km across the entire swath. The radiometer measurements will allow high-accuracy but coarse resolution (40 km) measurements. The radar measurements will add significantly higher resolution information. The radar is however very sensitive to surface roughness and vegetation structure. The combination of the two measurements allows optimal blending of the advantages of each instrument. SMAP directly observes only surface soil moisture (in the top 5 cm of the soil column). Several of the key applications targeted by SMAP, however, require knowledge of root zone soil moisture (approximately top 1 m of the soil column), which is not directly measured by SMAP. The foremost objective of the SMAP L4_SM product is to fill this gap and provide estimates of root zone soil moisture

  6. Organelle sedimentation in gravitropic roots of Limnobium is restricted to the elongation zone

    NASA Technical Reports Server (NTRS)

    Sack, F. D.; Kim, D.; Stein, B.

    1994-01-01

    Roots of the aquatic angiosperm Limnobium spongia (Bosc) Steud. were evaluated by light and electron microscopy to determine the distribution of organelle sedimentation towards gravity. Roots of Limnobium are strongly gravitropic. The rootcap consists of only two layers of cells. Although small amyloplasts are present in the central cap cells, no sedimentation of any organelle, including amyloplasts, was found. In contrast, both amyloplasts and nuclei sediment consistently and completely in cells of the elongation zone. Sedimentation occurs in one cell layer of the cortex just outside the endodermis. Sedimentation of both amyloplasts and nuclei begins in cells that are in their initial stages of elongation and persists at least to the level of the root where root hairs emerge. This is the first modern report of the presence of sedimentation away from, but not in, the rootcap. It shows that sedimentation in the rootcap is not necessary for gravitropic sensing in at least one angiosperm. If amyloplast sedimentation is responsible for gravitropic sensing, then the site of sensing in Limnobium roots is the elongation zone and not the rootcap. These data do not necessarily conflict with the hypothesis that sensing occurs in the cap in other roots, since Limnobium roots are exceptional in rootcap origin and structure, as well as in the distribution of organelle sedimentation. Similarly, if nuclear sedimentation is involved in gravitropic sensing, then nuclear mass would function in addition to, not instead of, that of amyloplasts.

  7. Towards a continuous operational system to estimate the root-zone soil moisture from intermittent remotely sensed surface moisture

    NASA Astrophysics Data System (ADS)

    Ragab, R.

    1995-12-01

    A study has been carried out to develop and evaluate a system to estimate soil moisture content in the root-zone using active microwaves from the European Remote Sensing Satellite, ERS-1, to measure moisture content in the top 10 cm of the soil profile. Two permanent grass sites in the UK with contrasting soil types, clayey and sandy, were selected for this study. The system consists of an initialization phase, which provides surface and root-zone moisture contents as initial values for the dynamic phase of a soil water balance model. The initial value of surface moisture can be either a remotely sensed or a measured value. The surface moisture value for a given day is in turn used to derive the initial value of the root-zone moisture for the same day. This can be obtained either from an empirical relationship for drying or wetting conditions, or during drying conditions alone. Both types of relationship have been established for each of the sites, with strong coefficient of determination, R2. The two-layer soil dynamic model requires as input daily rainfall, evapotranspiration and three soil physical parameters—soil moisture at field capacity, wilting point and a pseudo-diffusivity coefficient. The first layer represents the remotely sensed layer, taken as 0-10 cm, and the second represents the root-zone, taken as 0-50 cm, for both sites. The model has been run for 1992 and 1993. The model was not initialized by remote sensing data owing to an insufficient number of microwave backscatter-surface moisture data pairs to produce a relationship with good R2. It is hoped that the continuing collection of data will improve the relationships. Initial soil moisture contents of both layers were considered to be at field capacity, which is usually the case during winter time. The dynamic model, which offers a good balance between accurate description of the processes and minimum input of data, proved capable of simulating both surface and root-zone moisture content

  8. Growth in Turface® clay permits root hair phenotyping along the entire crown root in cereal crops and demonstrates that root hair growth can extend well beyond the root hair zone.

    PubMed

    Goron, Travis L; Watts, Sophia; Shearer, Charles; Raizada, Manish N

    2015-01-01

    In cereal crops, root hairs are reported to function within the root hair zone to carry out important roles in nutrient and water absorption. Nevertheless, these single cells remain understudied due to the practical challenges of phenotyping these delicate structures in large cereal crops growing on soil or other growth systems. Here we present an alternative growth system for examining the root hairs of cereal crops: the use of coarse Turface® clay alongside fertigation. This system allowed for root hairs to be easily visualized along the entire lengths of crown roots in three different cereal crops (maize, wheat, and finger millet). Surprisingly, we observed that the root hairs in these crops continued to grow beyond the canonical root hair zone, with the most root hair growth occurring on older crown root segments. We suggest that the Turface® fertigation system may permit a better understanding of the changing dynamics of root hairs as they age in large plants, and may facilitate new avenues for crop improvement below ground. However, the relevance of this system to field conditions must be further evaluated in other crops. PMID:25889276

  9. Root Zone Cooling and Exogenous Spermidine Root-Pretreatment Promoting Lactuca sativa L. Growth and Photosynthesis in the High-temperature Season

    PubMed Central

    Sun, Jin; Lu, Na; Xu, Hongjia; Maruo, Toru; Guo, Shirong

    2016-01-01

    Root zone high-temperature stress is a major factor limiting hydroponic plant growth during the high-temperature season. The effects of root zone cooling (RZC; at 25°C) and exogenous spermidine (Spd) root-pretreatment (SRP, 0.1 mM) on growth, leaf photosynthetic traits, and chlorophyll fluorescence characteristics of hydroponic Lactuca sativa L. grown in a high-temperature season (average temperature > 30°C) were examined. Both treatments significantly promoted plant growth and photosynthesis in the high-temperature season, but the mechanisms of photosynthesis improvement in the hydroponic grown lettuce plants were different between the RZC and SRP treatments. The former improved plant photosynthesis by increasing stoma conductance (Gs) to enhance CO2 supply, thus promoting photosynthetic electron transport activity and phosphorylation, which improved the level of the photochemical efficiency of photosystem II (PSII), rather than enhancing CO2 assimilation efficiency. The latter improved plant photosynthesis by enhancing CO2 assimilation efficiency, rather than stomatal regulation. Combination of RZC and SRP significantly improved PN of lettuce plants in a high-temperature season by both improvement of Gs to enhance CO2 supply and enhancement of CO2 assimilation. The enhancement of photosynthetic efficiency in both treatments was independent of altering light-harvesting or excessive energy dissipation. PMID:27047532

  10. Root Zone Cooling and Exogenous Spermidine Root-Pretreatment Promoting Lactuca sativa L. Growth and Photosynthesis in the High-temperature Season.

    PubMed

    Sun, Jin; Lu, Na; Xu, Hongjia; Maruo, Toru; Guo, Shirong

    2016-01-01

    Root zone high-temperature stress is a major factor limiting hydroponic plant growth during the high-temperature season. The effects of root zone cooling (RZC; at 25°C) and exogenous spermidine (Spd) root-pretreatment (SRP, 0.1 mM) on growth, leaf photosynthetic traits, and chlorophyll fluorescence characteristics of hydroponic Lactuca sativa L. grown in a high-temperature season (average temperature > 30°C) were examined. Both treatments significantly promoted plant growth and photosynthesis in the high-temperature season, but the mechanisms of photosynthesis improvement in the hydroponic grown lettuce plants were different between the RZC and SRP treatments. The former improved plant photosynthesis by increasing stoma conductance (G s) to enhance CO2 supply, thus promoting photosynthetic electron transport activity and phosphorylation, which improved the level of the photochemical efficiency of photosystem II (PSII), rather than enhancing CO2 assimilation efficiency. The latter improved plant photosynthesis by enhancing CO2 assimilation efficiency, rather than stomatal regulation. Combination of RZC and SRP significantly improved P N of lettuce plants in a high-temperature season by both improvement of G s to enhance CO2 supply and enhancement of CO2 assimilation. The enhancement of photosynthetic efficiency in both treatments was independent of altering light-harvesting or excessive energy dissipation. PMID:27047532

  11. Evaluation of a root zone TDR sensor for soil water content measurement

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Time domain reflectometry (TDR) is a well-established dielectric technique of measuring the soil volumetric water content (VWC). However, it is expensive and difficult to determine the depth-averaged VWC in the root zone using conventional TDR probes. The objectives of this study are to develop a lo...

  12. Creeping bentgrass growth in sand-based root zones with or without biochar

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Organic amendments such as peat moss and various composts are typically added to sand-based root zones to increase water and nutrient retention. However, these attributes are typically lost within a few years as these amendments decompose. Biochar is a high carbon, porous coproduct from the pyrolysi...

  13. Application of Data Assimilation with the Root Zone Water Quality Model for Soil Moisture Profile Estimation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Ensemble Kalman Filter (EnKF), a popular data assimilation technique for non-linear systems was applied to the Root Zone Water Quality Model. Measured soil moisture data at four different depths (5cm, 20cm, 40cm and 60cm) from two agricultural fields (AS1 and AS2) in northeastern Indiana were us...

  14. Benchmarking LSM root-zone soil mositure predictions using satellite-based vegetation indices

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The application of modern land surface models (LSMs) to agricultural drought monitoring is based on the premise that anomalies in LSM root-zone soil moisture estimates can accurately anticipate the subsequent impact of drought on vegetation productivity and health. In addition, the water and energy ...

  15. Mortality in two ditch species exposed to root-zone glyphosate

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Glyphosate is one of the most widely applied herbicides globally. While extensive research exists on the effects of glyphosate on non-target species exposed via drift and by-spray, little work has been done investigating the effects of root-zone glyphosate exposure that is associated with runoff fr...

  16. Constraining root-zone soil water availability using data assimilation and satellite remote sensing

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Large-scale monitoring of root-zone soil water availability, and therefore the duration and extent of regional agricultural drought, has emerged as an important application for satellite remote sensing and figures heavily into plans for next-generation earth observing satellites. At present, three ...

  17. Corn stover harvest increases herbicide movement to subsurface drains – Root Zone Water Quality Model simulations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    BACKGROUND: Removal of crop residues for bioenergy production can alter soil hydrologic properties, but there is little information on its impact on transport of herbicides and their degradation products to subsurface drains. The Root Zone Water Quality Model, previously calibrated using measured fl...

  18. SIMULATION OF NITROGEN MOVEMENT, TRANSFORMATION, AND UPTAKE IN PLANT ROOT ZONE

    EPA Science Inventory

    A detailed research model and a conceptual management model were developed to describe the fate of nitrogen in the plant root zone. Processes considered in both models were one-dimensional transport of water and water-soluble N-species as a result of irrigation/rainfall events, e...

  19. Climate controls how ecosystems size the root zone storage capacity at catchment scale

    NASA Astrophysics Data System (ADS)

    Gao, H.; Hrachowitz, M.; Schymanski, S. J.; Fenicia, F.; Sriwongsitanon, N.; Savenije, H. H. G.

    2014-11-01

    The root zone moisture storage capacity (SR) of terrestrial ecosystems is a buffer providing vegetation continuous access to water and a critical factor controlling land-atmospheric moisture exchange, hydrological response, and biogeochemical processes. However, it is impossible to observe directly at catchment scale. Here, using data from 300 diverse catchments, it was tested that, treating the root zone as a reservoir, the mass curve technique (MCT), an engineering method for reservoir design, can be used to estimate catchment-scale SR from effective rainfall and plant transpiration. Supporting the initial hypothesis, it was found that MCT-derived SR coincided with model-derived estimates. These estimates of parameter SR can be used to constrain hydrological, climate, and land surface models. Further, the study provides evidence that ecosystems dynamically design their root systems to bridge droughts with return periods of 10-40 years, controlled by climate and linked to aridity index, inter-storm duration, seasonality, and runoff ratio.

  20. Modeling and Assimilation of Root Zone Soil Moisture Using Remote Sensing Observations in Walnut Gulch Watershed During SMEX04

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil moisture status in the root zone is an important component of the water cycle at all spatial scales (e.g., point, field, catchment, watershed, and region). In this study, the spatio-temporal evolution of root zone soil moisture of the Walnut Gulch Experimental Watershed (WGEW) in Arizona was in...

  1. Combining fluorescence imaging and neutron radiography to simultaneously record dynamics of oxygen and water content in the root zone

    NASA Astrophysics Data System (ADS)

    Rudolph, N.; Oswald, S. E.; Nagl, S.; Kardjilov, N.

    2010-12-01

    There is a growing need in non-destructive techniques able to measure life-controlling parameters such as oxygen and water dynamics in ecosystems. We use neutron radiography coupled with fluorescence imaging to map the dynamics of these two essential biogeochemical parameters in the root-zone of plants. Measuring the real-time distribution of water and oxygen concentration can enable us to better understand where the active parts of the roots are located in respect to uptake and respiration. Roots performance itself is a function of age and local conditions such as water and oxygen availability in soil. It is technically challenging to monitor these dynamics in small distances from the roots without disturbing them. Non-destructive imaging methods such as fluorescence and neutron imaging provide a unique opportunity to unravel some of these complex processes. Boron-free glass containers (inner size 10cm x 10cm x 1cm) were filled with fine sand of different grain sizes. A sensor foil for O2 (Borisov et al. 2006) was installed on one inner-side of the containers. We grew lupine plants in the container for two weeks under controlled conditions. We took neutron radiographs and fluorescence images of the samples for a range of water contents, and therefore a range of root activities and oxygen changes. We observed the consumption of oxygen induced by roots of lupine plants during 36 hours. Neutron radiography gives us the information about root development and water content. Due to the high water content, aeration from atmosphere is limited. By focusing on the initial conditions we observe that the fluorescence intensity increases in the lower and upper part, where roots are located. The respiration activity creates oxygen deficits close to the roots, and we observed a higher activity by the lateral roots than the tap root. Moreover, the oxygen consumption increases with increasing root growth or root age. After 24 hours the images indicates better aeration in the upper

  2. Analysis of changes in relative elemental growth rate patterns in the elongation zone of Arabidopsis roots upon gravistimulation

    NASA Technical Reports Server (NTRS)

    Mullen, J. L.; Ishikawa, H.; Evans, M. L.

    1998-01-01

    Although Arabidopsis is an important system for studying root physiology, the localized growth patterns of its roots have not been well defined, particularly during tropic responses. In order to characterize growth rate profiles along the apex of primary roots of Arabidopsis thaliana (L.) Heynh (ecotype Columbia) we applied small charcoal particles to the root surface and analyzed their displacement during growth using an automated video digitizer system with custom software for tracking the markers. When growing vertically, the maximum elongation rate occurred 481 +/- 50 microns back from the extreme tip of the root (tip of root cap), and the elongation zone extended back to 912 +/- 137 microns. The distal elongation zone (DEZ) has previously been described as the apical region of the elongation zone in which the relative elemental growth rate (REGR) is < or = 30% of the peak rate in the central elongation zone. By this definition, our data indicate that the basal limit of the DEZ was located 248 +/- 30 microns from the root tip. However, after gravistimulation, the growth patterns of the root changed. Within the first hour of graviresponse, the basal limit of the DEZ and the position of peak REGR shifted apically on the upper flank of the root. This was due to a combination of increased growth in the DEZ and growth inhibition in the central elongation zone. On the lower flank, the basal limit of the DEZ shifted basipetally as the REGR decreased. These factors set up the gradient of growth rate across the root, which drives curvature.

  3. Effects of Application Methods and Plastic Covers on Distribution of Cis- and Trans-1,3-Dichloropropene and Chloropicrin in Root Zone

    PubMed Central

    Ou, L.-T.; Thomas, J. E.; Allen, L. H.; McCormack, L. A.; Vu, J. C.; Dickson, D. W.

    2005-01-01

    This study examined the effects of three application methods (chisel injection, Avenger coulter injection, and drip irrigation) and two plastic films (polyethylene film [PE] and virtually impermeable film [VIF]) on distribution of cis- and trans- 1,3-dichloropropene (1,3-D) and chloropicrin (CP) in a Florida sandy soil after application of Telone C35 or Telone In-Line. Regardless of application method, VIF retained greater amounts of cis- and trans-1,3-D and CP in the root zone with longer residential time than PE. There was better retention of the three compounds in the root zone when applied with the Avenger coulter injection rig than chisel injection, especially in combination with VIF. Distribution of the three compounds in the root zone was less predictable when applied by drip irrigation. Following drip irrigation, more than 50% of the three compounds in the PE and VIF-covered beds was found near the end of the drip tapes in one experiment, whereas the distribution was much more uniform in the root zone in a second experiment. Among the three biologically active compounds, CP disappeared from the root zone more rapidly than cis- and trans-1,3-D, especially in the PE-covered beds. PMID:19262895

  4. Parameter Estimation And Sensitivity Analysis for Root Zone Soil Moisture in SVAT Models.

    NASA Astrophysics Data System (ADS)

    Judge, J.; Agrawal, D.; Graham, W. D.

    2008-05-01

    Accurate knowledge of root zone soil moisture is crucial in hydrology, micrometeorology and agriculture for estimating energy and moisture fluxes at the land surface. Soil Vegetation Atmosphere Transfer (SVAT) models are typically used to simulate energy and moisture transport in soil and vegetation, and estimate these fluxes at the land surface and in the vadose zone. Coupling an SVAT model with a vegetation model allows inclusion of canopy effects on the fluxes, without relying on observations or empirical functions. An SVAT model, viz. Land Surface Process (LSP) model, has been coupled with a widely used crop-growth model, Decision Support System for Agrotechnology Transfer (DSSAT). The LSP-DSSAT was calibrated for a growing season of sweet corn in North Central Florida, using extensive field observations from the second Microwave Water and Energy Balance Experiment (MicroWEX-2). In this research, we address uncertainty of parameters in the LSP-DSSAT model, due to uncertainty in forcings and initial conditions, and due to accumulated errors from numerical computation. We also conduct sensitivity analyses to identify key model parameters to which the root zone soil moisture estimates are most sensitive. We will present a stochastic approach to estimate correlations between the parameters and root zone soil moisture.

  5. Independent determination of the maximum root zone storage (SuMax) in conceptual models

    NASA Astrophysics Data System (ADS)

    Gao, Hongkai; Fenicia, Fabrizio; Sriwongsitanon, Nutchanart; Saengsawang, Sirikanya; Hrachowitz, Markus; Gharari, Shervan; Savenije, Hubert

    2014-05-01

    The maximum root zone storage in the unsaturated zone is an important parameter in most conceptual hydrological models, although it is known by different terms such as SuMax (SUPERFLEX), Wmm' (Xinanjiang/VIC), FC (HBV), and Srmax (Topmodel), x1 (GR4J). SuMax is not only used for partitioning precipitation into runoff and infiltration under different soil moisture conditions, but it is also a key variable determining actual transpiration. Since SuMax at the scale of conceptual models cannot be directly observed, it is normally determined by calibration. In this study, we propose an approach to estimate it directly from the observed hydrograph. The approach makes use of the Ripple diagram (which is traditionally applied in reservoir storage design) to estimate the root zone depth required for ecosystem to overcome the driest period in the time series. The assumption is that ecosystem adjust the root depth in a way that they can survive in a critical dry period. We applied the SUPERFLEX model with the Xinanjiang/VIC conceptualization for the unsaturated reservoir to represent the spatial variable rooting depth. The minimum storage requirement derived from Ripple diagram was subsequently compared to the average maximum root zone storage in the basin obtained from model calibration. The storage equals SuMax/(1 + β) in agreement with the beta function spatial distribution over the basin. Eleven catchments in the Upper Ping River Basin in Northern Thailand have been selected as a case study to test our hypothesis. The results suggest that the SuMax/(1 + β) indeed represents the average root zone storage, which is strongly determined by an extreme dry period in the time series (approximately once in 10 years). Extreme dry year conditions determine how deep the roots extend into the soil, which can be interpreted as an approximation of the storage capacity of the unsaturated reservoir in conceptual hydrological models. This further suggests that the SuMax/(1 + β) can be

  6. Controls on groundwater dynamics and root zone aeration of a coastal fluvial delta island, Wax Lake, Louisiana

    NASA Astrophysics Data System (ADS)

    O'Connor, M.; Hardison, A. K.; Moffett, K. B.

    2013-12-01

    Louisiana coastal wetlands are thought to function as buffers, filtering nutrient-rich terrestrial runoff as it travels to the Gulf of Mexico. While surface water filtration by these wetlands is a large and active area of research, flow through subsurface portions of the wetlands and possible nutrient cycling in the root zone has been largely overlooked. Specifically for Louisiana's coastal deltas, the physics and chemistry of island groundwater systems is unknown.To characterize these subsurface hydraulic dynamics at Pintail Island in the Wax Lake Delta, Louisiana, we collected sediment core samples and penetrometer measurements, monitored surface water and groundwater levels and chemistry, and analyzed meteorological, tidal, and river discharge data. As a first step, we focused on identifying wetland sediment properties and the relative influence of the major hydrologic controls, tides, delta outlet discharge, rainfall, and evapotranspiration, on water table dynamics. Pintail Island is a two-layer system with fine sediments and organic matter overlying sandy deltaic deposits. The sediment layer interface occurs approximately 60 cm below ground surface, around the mean surface water level. The vegetation root zone is concentrated in the surficial layer, although willow roots can extend into the deeper, higher-permeability sandy layer. Groundwater data from the upper portion of this sandy layer (~1m deep) is most strongly influenced by tides but also responds to long-term changes in discharge. While the tides are damped as they propagate into the island sediments, they also flood interior island lagoons, setting up groundwater gradients to potentially drive fluid and nutrient fluxes through the islands. Although the tidally oscillating water table causes significant temporal variation in root zone fluid potentials, evapotranspiration dynamics do not appear to strongly influence groundwater dynamics at depth, consistent with the shallow concentration of roots

  7. Calculation of available water supply in crop root zone and the water balance of crops

    NASA Astrophysics Data System (ADS)

    Haberle, Jan; Svoboda, Pavel

    2015-12-01

    Determination of the water supply available in soils for crops is important for both the calculation of water balance and the prediction of water stress. An approach to calculations of available water content in layers of the root zone, depletion of water during growth, and water balance, with limited access to data on farms, is presented. Soil water retention was calculated with simple pedotransfer functions from the texture of soil layers, root depth, and depletion function were derived from observed data; and the potential evapotranspiration was calculated from the temperature. A comparison of the calculated and experimental soil water contents showed a reasonable fit.

  8. Hydrogeophysical Monitoring of Water Uptake in Root Zones of Small Plants

    NASA Astrophysics Data System (ADS)

    Al Hagrey, S.; Werban, U.; Meissner, R.; Ismaeil, A.; Rabbel, W.

    2005-05-01

    We have monitored the water content in root zones in hydrogeophysical experiments and studied daily and seasonal variations of water uptake. Plants grew in plastic pots filled with fine sand. The surface of the pots was isolated to minimize evaporation, i.e., most water is consumed for transpiration. We installed geoelectric surface and subsurface profiles (electrode interval = 1.5 cm), and used 900/1500 MHz antennas to measure the travel times of radar waves reflected from a metallic plate at the base. Also a central and peripheral TDR and a tensiometer probe were installed. A continuous data acquisition was conducted to monitor the spatiotemporal water content of root zones and its variations. Our observations clearly reflect a decrease of pore water content with time and its abrupt increase directly after each irrigation cycle. TDR and tensiometer curves are parallel and mirror images of the resistivity curve. Observed soil water content in the day time was consistently lower than in the night time (no plant transpiration). Long-term observations of water uptake by roots show that the plants behavior is a function of the background moisture content. The maximum water uptake of optimum growth occurs at intermediate water content. Seasonal variations could be observed. The water uptake in May is obviously twice that of November. This can be explained by the fact that the available light (required for photosynthesis) was higher in May than in November. Also the effect of day light on the water uptake can be observed. The light sunny days show higher water uptake than the dark rainy days. The peripheral water content values that decrease with time are lower than that of the central root zone and show small night and day changes. This may imply that the central TDR probe measures the water content both within the wet root branches and the bounding soils, whereas the peripheral TDR reading represents the soil pore water only. Electrical models of the root zone show a

  9. Surface Soil Moisture Assimilation From ASAR Imagery for Root Zone Moisture Predictions at Basin Scale

    NASA Astrophysics Data System (ADS)

    Caschili, A.; Montaldo, N.; Mancini, M.; Albertson, J. D.; Botti, P.; Dessena, M. A.; Carboni, E.

    2003-12-01

    The state of the root-zone soil moisture is a key variable controlling surface water and energy balances. Emerging efforts in data assimilation seek to guide land surface models (LSMs) with periodic observations of surface soil moisture. Montaldo et al. (Water Resour. Res., 2001) and Montaldo and Albertson (Adv. Water Resour., 2003) developed an operational multi-scale assimilation system for robust root zone soil moisture predictions at the local scale. The assimilation scheme, developed for a force-restore method based LSM, updates the measured surface soil moisture, the root zone soil water content and the soil hydraulic conductivity, in a manner that compensates for both inaccurate initial conditions and model parameter estimates. In this presentation we describe the development and testing of an operational assimilation system for robust root-zone soil moisture predictions at the basin scale. High resolution data of the new ASAR (advanced synthetic aperture radar) sensor aboard European Space Agency's Envisat satellite offers the opportunity for monitoring surface soil moisture at high resolution (up to 30 m), which is suitable for distributed mapping within the small scales of typical Mediterranean basins. Indeed, adequate spatio-temporal monitoring of the soil moisture is essential to improve our capability to simulate the water balance. As part of a recently-approved European Space Agency (ESA) Envisat AO project, ASAR-based soil moisture mapping of the Mulargia basin (area of about 65 sq.km), sub-basin of the Flumendosa basin in Sardinia, are available . This semi-arid basin has a key role in the water resources management of Sardinia. Semi-arid regions, such as Sardinia island, suffers from water scarcity, which is increasingly due to the broad desertification processes of the Mediterranean area. Within the basin, land surface fluxes are well monitored through two evapotraspiration measurement systems (one eddy correlation technique based station, and one

  10. Plant responses to heterogeneous salinity: growth of the halophyte Atriplex nummularia is determined by the root-weighted mean salinity of the root zone.

    PubMed

    Bazihizina, Nadia; Barrett-Lennard, Edward G; Colmer, Timothy D

    2012-11-01

    Soil salinity is generally spatially heterogeneous, but our understanding of halophyte physiology under such conditions is limited. The growth and physiology of the dicotyledonous halophyte Atriplex nummularia was evaluated in split-root experiments to test whether growth is determined by: (i) the lowest; (ii) the highest; or (iii) the mean salinity of the root zone. In two experiments, plants were grown with uniform salinities or horizontally heterogeneous salinities (10-450 mM NaCl in the low-salt side and 670 mM in the high-salt side, or 10 mM NaCl in the low-salt side and 500-1500 mM in the high-salt side). The combined data showed that growth and gas exchange parameters responded most closely to the root-weighted mean salinity rather than to the lowest, mean, or highest salinity in the root zone. In contrast, midday shoot water potentials were determined by the lowest salinity in the root zone, consistent with most water being taken from the least negative water potential source. With uniform salinity, maximum shoot growth was at 120-230 mM NaCl; ~90% of maximum growth occurred at 10 mM and 450 mM NaCl. Exposure of part of the roots to 1500 mM NaCl resulted in an enhanced (+40%) root growth on the low-salt side, which lowered root-weighted mean salinity and enabled the maintenance of shoot growth. Atriplex nummularia grew even with extreme salinity in part of the roots, as long as the root-weighted mean salinity of the root zone was within the 10-450 mM range. PMID:23125356

  11. Effects of irrigation with treated wastewater on the conditions in the root zone in orchards planted on clayey soils

    NASA Astrophysics Data System (ADS)

    Assouline, S.

    2013-12-01

    With increasing water scarcity, treated wastewater (TW) appears as an attractive alternative source of water for irrigation, especially in arid and semi-arid regions where freshwater is naturally scarce. However, it seems that long-term use of TW for irrigation of orchards planted on heavy soils cause to yield reduction and crop damages. In terms of water quality, TW are characterized by higher concentrations of sodium and dissolved organic content that affect soil exchangeable sodium percentage on one hand and soil wettability, on the other hand. The working hypothesis of this study is that long-term use of TW for irrigation of clayey soils causes significant changes in the soil hydraulic properties, thus impacting on the conditions in the root zone. Experimental data show a significant effect of TW application on the main flow processes, infiltration and evaporation, on soil swelling intensity, and on spatial distribution of soil chemical attributes. All these reflect the impact of water quality on soil hydraulic properties. Continuous monitoring of oxygen concentration in the soil profile revealed that the air regime in the root zone is also significantly affected by irrigation water quality, with consequent implications on root respiration and microbial activity.

  12. Zonal Changes in Ascorbate and Hydrogen Peroxide Contents, Peroxidase, and Ascorbate-Related Enzyme Activities in Onion Roots1

    PubMed Central

    del Carmen Córdoba-Pedregosa, María; Córdoba, Francisco; Villalba, José Manuel; González-Reyes, José Antonio

    2003-01-01

    Onion (Allium cepa) roots growing hydroponically show differential zonal values for intra- (symplastic) and extra- (apoplastic) cellular ascorbate (ASC) and dehydroascorbate (DHA) contents and for related enzyme activities. In whole roots, ASC and DHA concentrations were higher in root apex and meristem and gradually decreased toward the root base. Guaiacol peroxidase, ASC peroxidase, monodehydroascorbate oxidoreductase, DHA reductase, catalase, and glutathione reductase activities showed differential activity patterns depending on the zone of the root and their apoplastic or symplastic origin. An in vivo staining of peroxidase activity also revealed a specific distribution pattern along the root axis. Using electron microscopy, hydrogen peroxide was found at different locations depending on the root zone but was mainly located in cell walls from epidermal and meristematic cells and in cells undergoing lignification. A balanced control of all of these molecules seems to exist along the root axis and may be directly related to the mechanisms in which the ASC system is involved, as cell division and elongation. The role of ASC on growth and development in relation to its presence at the different zones of the root is discussed. PMID:12586893

  13. Root-Zone Salinity Alters Raffinose Oligosaccharide Metabolism and Transport in Coleus.

    PubMed Central

    Gilbert, G. A.; Wilson, C.; Madore, M. A.

    1997-01-01

    Exposure of variegated coleus (Coleus blumei Benth.) plants to a saline root-zone environment (60 mM NaCl:12 mM CaCl2) resulted in a significant decline in elongation growth rate over the 30-d experimental period. During the initial 5 to 10 d of exposure, mature source leaves showed strongly diminished rates of photosynthesis, which gradually recovered to close to the control rates by the end of the experiment. In green leaf tissues, starch levels showed the same transient decline and recovery pattern. Low starch levels were accompanied by the appearance of several novel carbohydrates, including high-molecular-weight raffinose family oligosaccharides (RFOs) with a degree of polymerization (DP) of 5 to 8, and an O-methylated inositol (OMI). New enzyme activities, including galactan:galactan galactosyltransferase, for the synthesis of high-DP RFOs and myo-inositol 6-O-methyltransferase for O-methylation of myo-inositol, were induced by salinity stress. Phloem-sap analysis showed that in the stressed condition substantially more sucrose than RFO was exported, as was the OMI. In white sink tissues these phloem sugars were used to synthesize high-DP RFOs but not OMIs. In sink tissues galactan:galactan galactosyltransferase but not myo-inositol 6-O-methyltransferase was induced by salinity stress. Models reflecting the changes in carbohydrate metabolism in source and sink tissues in response to salinity stress are presented. PMID:12223871

  14. Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity.

    PubMed

    Rodrigues, Richard R; Pineda, Rosana P; Barney, Jacob N; Nilsen, Erik T; Barrett, John E; Williams, Mark A

    2015-01-01

    The importance of plant-microbe associations for the invasion of plant species have not been often tested under field conditions. The research sought to determine patterns of change in microbial communities associated with the establishment of invasive plants with different taxonomic and phenetic traits. Three independent locations in Virginia, USA were selected. One site was invaded by a grass (Microstegium vimineum), another by a shrub (Rhamnus davurica), and the third by a tree (Ailanthus altissima). The native vegetation from these sites was used as reference. 16S rRNA and ITS regions were sequenced to study root-zone bacterial and fungal communities, respectively, in invaded and non-invaded samples and analyzed using Quantitative Insights Into Microbial Ecology (QIIME). Though root-zone microbial community structure initially differed across locations, plant invasion shifted communities in similar ways. Indicator species analysis revealed that Operational Taxonomic Units (OTUs) closely related to Proteobacteria, Acidobacteria, Actinobacteria, and Ascomycota increased in abundance due to plant invasions. The Hyphomonadaceae family in the Rhodobacterales order and ammonia-oxidizing Nitrospirae phylum showed greater relative abundance in the invaded root-zone soils. Hyphomicrobiaceae, another bacterial family within the phyla Proteobacteria increased as a result of plant invasion, but the effect associated most strongly with root-zones of M. vimineum and R. davurica. Functional analysis using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) showed bacteria responsible for nitrogen cycling in soil increased in relative abundance in association with plant invasion. In agreement with phylogenetic and functional analyses, greater turnover of ammonium and nitrate was associated with plant invasion. Overall, bacterial and fungal communities changed congruently across plant invaders, and support the hypothesis that nitrogen

  15. Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity

    PubMed Central

    Rodrigues, Richard R.; Pineda, Rosana P.; Barney, Jacob N.; Nilsen, Erik T.; Barrett, John E.; Williams, Mark A.

    2015-01-01

    The importance of plant-microbe associations for the invasion of plant species have not been often tested under field conditions. The research sought to determine patterns of change in microbial communities associated with the establishment of invasive plants with different taxonomic and phenetic traits. Three independent locations in Virginia, USA were selected. One site was invaded by a grass (Microstegium vimineum), another by a shrub (Rhamnus davurica), and the third by a tree (Ailanthus altissima). The native vegetation from these sites was used as reference. 16S rRNA and ITS regions were sequenced to study root-zone bacterial and fungal communities, respectively, in invaded and non-invaded samples and analyzed using Quantitative Insights Into Microbial Ecology (QIIME). Though root-zone microbial community structure initially differed across locations, plant invasion shifted communities in similar ways. Indicator species analysis revealed that Operational Taxonomic Units (OTUs) closely related to Proteobacteria, Acidobacteria, Actinobacteria, and Ascomycota increased in abundance due to plant invasions. The Hyphomonadaceae family in the Rhodobacterales order and ammonia-oxidizing Nitrospirae phylum showed greater relative abundance in the invaded root-zone soils. Hyphomicrobiaceae, another bacterial family within the phyla Proteobacteria increased as a result of plant invasion, but the effect associated most strongly with root-zones of M. vimineum and R. davurica. Functional analysis using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) showed bacteria responsible for nitrogen cycling in soil increased in relative abundance in association with plant invasion. In agreement with phylogenetic and functional analyses, greater turnover of ammonium and nitrate was associated with plant invasion. Overall, bacterial and fungal communities changed congruently across plant invaders, and support the hypothesis that nitrogen

  16. Root-zone soil moisture estimation using data-driven methods

    NASA Astrophysics Data System (ADS)

    Kornelsen, Kurt C.; Coulibaly, Paulin

    2014-04-01

    The soil moisture state partitions both mass and energy fluxes and is important for many hydro-geochemical cycles, but is often only measured within the surface layer. Estimating the amount of soil moisture in the root-zone from this information is difficult due to the nonlinear and heterogeneous nature of the various processes which alter the soil moisture state. Data-driven methods, such as artificial neural networks (ANN), mine data for nonlinear interdependencies and have potential for estimating root-zone soil moisture from surface soil moisture observations. To create an ANN root-zone model that was nonsite-specific and physically constrained, a training set was generated by forcing HYDRUS-1D with meteorological observations for different soil profiles from the unsaturated soil hydraulic database. Ensemble ANNs were trained to provide soil moisture at depths of 10, 20, and 50 cm below the surface using surface soil moisture observations and local meteorological information. Insights into the processes represented by the ANNs were derived from a clamping sensitivity analysis and by changing the ANNs input data. Further model testing based on synthetic soil moisture profiles from three McMaster Mesonet and three USDA soil climate analysis network sites suggests that ANNs are a flexible tool capable of predicting root-zone soil moisture with good accuracy. It was found that ANNs could well represent soil moisture as estimated by HYDRUS-1D, but performance was reduced in comparison to in situ soil moisture observations outside the training conditions. The transferability of the model appears limited to the same geographic region.

  17. Enzyme and root activities in surface-flow constructed wetlands.

    PubMed

    Kong, Ling; Wang, Yu-Bin; Zhao, Li-Na; Chen, Zhang-He

    2009-07-01

    Sixteen small-scale wetlands planted with four plant species were constructed for domestic wastewater purification. The objective of this study was to determine the correlations between contaminant removal and soil enzyme activity, root activity, and growth in the constructed wetlands. The results indicated that correlations between contaminant removal efficiency and enzyme activity varied depending on the contaminants. The removal efficiency of NH4+ was significantly correlated with both urease and protease activity in all wetlands, and the removal of total phosphorus and soluble reactive phosphorus was significantly correlated with phosphatase activity in most wetlands, while the removal of total nitrogen, NO3(-) , and chemical oxygen demand (COD) was significantly correlated with enzyme activity only in a few instances. Correlations between soil enzyme activity and root activity varied among species. Activities of all enzymes were significantly correlated with root activity in Vetiveria zizanioides and Phragmites australis wetlands, but not in Hymenocallis littoralis wetlands. Significant correlations between enzyme activity and root biomass and between enzyme activity and root growth were found mainly in Cyperus flabelliformis wetlands. Root activity was significantly correlated with removal efficiencies of all contaminants except NO3(-) and COD in V. zizanioides wetlands. Enzyme activities and root activity showed single-peak seasonal patterns. Activities of phosphatase, urease, and cellulase were significantly higher in the top layer of the substrate than in the deeper layers, and there were generally no significant differences between the deeper layers (deeper than 15 cm). PMID:19497608

  18. The role of the distal elongation zone in the response of maize roots to auxin and gravity

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1993-01-01

    We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism.

  19. The role of the distal elongation zone in the response of maize roots to auxin and gravity.

    PubMed

    Ishikawa, H; Evans, M L

    1993-08-01

    We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism. PMID:11536543

  20. The role of the distal elongation zone in the response of maize roots to auxin and gravity.

    PubMed Central

    Ishikawa, H; Evans, M L

    1993-01-01

    We used a video digitizer system to (a) measure changes in the pattern of longitudinal surface extension in primary roots of maize (Zea mays L.) upon application and withdrawal of auxin and (b) compare these patterns during gravitropism in control roots and roots pretreated with auxin. Special attention was paid to the distal elongation zone (DEZ), arbitrarily defined as the region between the meristem and the point within the elongation zone at which the rate of elongation reaches 0.3 of the peak rate. For roots in aqueous solution, the basal limit of the DEZ is about 2.5 mm behind the tip of the root cap. Auxin suppressed elongation throughout the elongation zone, but, after 1 to 3 h, elongation resumed, primarily as a result of induction of rapid elongation in the DEZ. Withdrawal of auxin during the period of strong inhibition resulted in exceptionally rapid elongation attributable to the initiation of rapid elongation in the DEZ plus recovery in the main elongation zone. Gravistimulation of auxin-inhibited roots induced rapid elongation in the DEZ along the top of the root. This resulted in rapid gravitropism even though the elongation rate of the root was zero before gravistimulation. The results indicate that cells of the DEZ differ from cells in the bulk of the elongation zone with respect to auxin sensitivity and that DEZ cells play an important role in gravitropism. PMID:11536543

  1. Distribution of electrolytes in cells of the tomato root elongation zone during a gravitropic response

    NASA Astrophysics Data System (ADS)

    Klymchuk, Dmytro

    It is known that gravitropic response of etiolated seedlings is accompanied with asymmetrical distribution of auxins. The higher amount of auxins in the tissues of the lower sides of gravistimulated organs induces cell elongation in shoots and inhibits cell elongation in roots. In spite on the progress in understanding of the auxin-mediated effects on plant growth and development, there is no a complete conception concerning of gravitropic response mechanism. This investigation aims to determine whether the growth response of tomato seedlings on reorientation to the horizontal induces alterations in distribution of electrolytes in cells of the main root elongation zone, the site where induction of the curvature takes place. Tomato (Lycopersicon esculentum, Rio Grande) seedlings were grown on agar surface in 10 cm Petri dishes. The gravitropic response of seedlings was evaluated by the angle of gravitropic curvature after the roots were reoriented 90° from the vertical. Root segments of several mm basipetal to the root tip were fixed in liquid nitrogen, freeze-substituted with Lowicril K11M at -35° C. Sections 100 and 1000 nm thick were cut using LKB Ultrotome V, collected by dry method and analyzed in the 6060 LA SEM at accelerating voltage 15 kV. Using different modes of X-ray microanalysis (X-ray map, - line and -point analysis), distribution of the physiologically relevant ions (Na, P, K, Ca) in cells of surface layers of the upper and lower root sides were investigated. The peculiarities in localization of the electrolytes in different subcellular compartments as well as distribution in the direction between upper and lower sides of the root curvature are discussed.

  2. How rice roots form their surrounding: Distinctive sub-zones of oxides, silicates and organic matter

    NASA Astrophysics Data System (ADS)

    Koelbl, Angelika; Mueller, Carsten; Hoeschen, Carmen; Lugmeier, Johann; Said-Pullicino, Daniel; Romani, Marco; Koegel-Knabner, Ingrid

    2016-04-01

    different mineral particles (e.g. oxides, clay minerals). Beside single 40 x 40 μm sized spots, mosaics of 20 x 20 μm sized images were combined to investigate the region from the surface of the root channels into the soil matrix. The image data of all detected secondary ions was analysed using line scans and designation of regions of interest (ROI) to evaluate relative occurrences and spatial distributions. The results revealed that the oxic zone around rice roots can be subdivided in distinctive sub-zones. We identified a distinctive zone of approx. 20 μm around the root channels, where exclusively oxide-associated organic matter occurred. This zone can be clearly distinguished from a clay mineral-dominated zone. In addition, oxide-incrusted root cells revealed coexisting regions of Fe (hydr)oxides and Al-organic complexes.

  3. Root tip-dependent, active riboflavin secretion by Hyoscyamus albus hairy roots under iron deficiency.

    PubMed

    Higa, Ataru; Miyamoto, Erika; ur Rahman, Laiq; Kitamura, Yoshie

    2008-04-01

    Hyoscyamus albus hairy roots with/without an exogenous gene (11 clones) were established by inoculation of Agrobacterium rhizogenes. All clones cultured under iron-deficient condition secreted riboflavin from the root tips into the culture medium and the productivity depended on the number and size of root tips among the clones. A decline of pH was observed before riboflavin production and root development. By studying effects of proton-pump inhibitors, medium acidification with external organic acid, and riboflavin addition upon pH change and riboflavin productivity, we indicate that riboflavin efflux is not directly connected to active pH reduction, and more significantly active riboflavin secretion occurs as a response to an internal requirement in H. albus hairy roots under iron deficiency. PMID:18367404

  4. On the antibacterial activity of roots of Capparis spinosa L.

    PubMed

    Boga, Carla; Forlani, Luciano; Calienni, Rocco; Hindley, Teresa; Hochkoeppler, Alejandro; Tozzi, Silvia; Zanna, Nicola

    2011-02-01

    A decoction of Capparis spinosa L. roots, widely used in the traditional folk medicine of southern Italy, was prepared and submitted to antibacterial activity tests, which showed an interesting bacteriostatic activity on the growth of Deinococcus radiophilus. Heterocyclic compounds were also recovered from the chloroformic extract of the roots. PMID:21328135

  5. Root-zone acidity affects relative uptake of nitrate and ammonium from mixed nitrogen sources

    NASA Technical Reports Server (NTRS)

    Vessey, J. K.; Henry, L. T.; Chaillou, S.; Raper, C. D. Jr; Raper CD, J. r. (Principal Investigator)

    1990-01-01

    Soybean plants (Glycine max [L.] Merr. cv Ransom) were grown for 21 days on 4 sources of N (1.0 mM NO3-, 0.67 mM NO3- plus 0.33 mM NH4+, 0.33 mM NO3- plus 0.67 mM NH4+, and 1.0 mM NH4+) in hydroponic culture with the acidity of the nutrient solution controlled at pH 6.0, 5.5, 5.0, and 4.5. Dry matter and total N accumulation of the plants was not significantly affected by N-source at any of the pH levels except for decreases in these parameters in plants supplied solely with NH4+ at pH 4.5. Shoot-to-root ratios increased in plants which had an increased proportion [correction of proporiton] of NH4(+)-N in their nutrient solutions at all levels of root-zone pH. Uptake of NO3- and NH4+ was monitored daily by ion chromatography as depletion of these ions from the replenished hydroponic solutions. At all pH levels the proportion of either ion that was absorbed increased as the ratio of that ion increased in the nutrient solution. In plants which were supplied with sources of NO3- plus NH4+, NH4+ was absorbed at a ratio of 2:1 over NO3- at pH 6.0. As the pH of the root-zone declined, however, NH4+ uptake decreased and NO3- uptake increased. Thus, the NH4+ to NO3- uptake ratio declined with decreases in root-zone pH. The data indicate a negative effect of declining root-zone pH on NH4+ uptake and supports a hypothesis that the inhibition of growth of plants dependent on NH4(+)-N at low pH is due to a decline in NH4+ uptake and a consequential limitation of growth by N stress.

  6. Cytoplasmic calcium levels in protoplasts from the cap and elongation zone of maize roots

    NASA Technical Reports Server (NTRS)

    Kiss, H. G.; Evans, M. L.; Johnson, J. D.

    1991-01-01

    Calcium has been implicated as a key component in the signal transduction process of root gravitropism. We measured cytoplasmic free calcium in protoplasts isolated from the elongation zone and cap of primary roots of light-grown, vertically oriented seedlings of Zea mays L. Protoplasts were loaded with the penta-potassium salts of fura-2 and indo-1 by incubation in acidic solutions of these calcium indicators. Loading increased with decreasing pH but the pH dependence was stronger for indo-1 than for fura-2. In the case of fura-2, loading was enhanced only at the lowest pH (4.5) tested. Dyes loaded in this manner were distributed predominantly in the cytoplasm as indicated by fluorescence patterns. As an alternative method of loading, protoplasts were incubated with the acetoxymethylesters of fura-2 and indo-1. Protoplasts loaded by this method exhibited fluorescence both in the cytoplasm and in association with various organelles. Cytoplasmic calcium levels measured using spectrofluorometry, were found to be 160 +/- 40 nM and 257 +/- 27 nM, respectively, in populations of protoplasts from the root cap and elongation zone. Cytoplasmic free calcium did not increase upon addition of calcium to the incubation medium, indicating that the passive permeability to calcium was low.

  7. Climate controls how ecosystems size the root zone storage capacity at catchment scale

    NASA Astrophysics Data System (ADS)

    Gao, Hongkai; Hrachowitz, Markus; Schymanski, Stan; Fenicia, Fabrizio; Sriwongsitanon, Nutchanart; Savenije, Hubert

    2015-04-01

    The root zone moisture storage capacity (SR) of terrestrial ecosystems is a buffer providing vegetation continuous access to water and a critical factor controlling land-atmospheric moisture exchange, hydrological response and biogeochemical processes. However, it is impossible to observe directly at catchment scale. Here, using data from 300 diverse catchments, it was tested that, treating the root zone as a reservoir, the mass curve technique (MCT), an engineering method for reservoir design, can be used to estimate catchment-scale SR from effective rainfall and plant transpiration. Supporting the initial hypothesis, it was found that MCT-derived SR coincided with model-derived estimates. These estimates of parameter SR can be used to constrain hydrological, climate and land surface models. Further, the study provides evidence that ecosystems dynamically design their root systems to bridge droughts with return periods of 10-40 years, controlled by climate and linked to aridity index, inter-storm duration, seasonality and runoff ratio. This adaptation of ecosystems to climate could be explored for prediction in ungauged basins. We found that implementing the MCT-derived SR without recalibration has dramatically increased hydrological model transferability.

  8. Formate-derived H2 , a driver of hydrogenotrophic processes in the root-zone of a methane-emitting fen.

    PubMed

    Hunger, Sindy; Schmidt, Oliver; Gößner, Anita S; Drake, Harold L

    2016-09-01

    Wetlands are important sources of globally emitted methane. Plants mediate much of that emission by releasing root-derived organic carbon, including formate, a direct precursor of methane. Thus, the objective of this study was to resolve formate-driven processes potentially linked to methanogenesis in the fen root-zone. Although, formate was anticipated to directly trigger methanogenesis, the rapid anaerobic consumption of formate by Carex roots unexpectedly yielded H2 and CO2 via enzymes such as formate-H2 -lyase (FHL), and likewise appeared to enhance the utilization of organic carbon. Collectively, 57 [FeFe]- and [NiFe]-hydrogenase-containing family level phylotypes potentially linked to FHL activity were detected. Under anoxic conditions, root-derived fermentative Citrobacter and Hafnia isolates produced H2 from formate via FHL. Formate-derived H2 fueled methanogenesis and acetogenesis, and methanogenic (Methanoregula, Methanobacterium, Methanocella) and acetogenic (Acetonema, Clostridum, Sporomusa) genera potentially linked to these hydrogenotrophic activities were identified. The findings (i) provide novel insights on highly diverse root-associated FHL-containing taxa that can augment secondary hydrogenotrophic processes via the production of formate-derived H2 , (ii) demonstrate that formate can have a 'priming' effect on the utilization of organic carbon, and (iii) raise questions regarding the fate of formate-derived H2 when it diffuses away from the root-zone. PMID:26999575

  9. Differential Responsiveness of Cortical Microtubule Orientation to Suppression of Cell Expansion among the Developmental Zones of Arabidopsis thaliana Root Apex

    PubMed Central

    Panteris, Emmanuel; Adamakis, Ioannis-Dimosthenis S.; Daras, Gerasimos; Hatzopoulos, Polydefkis; Rigas, Stamatis

    2013-01-01

    Τhe bidirectional relationship between cortical microtubule orientation and cell wall structure has been extensively studied in elongating cells. Nevertheless, the possible interplay between microtubules and cell wall elements in meristematic cells still remains elusive. Herein, the impact of cellulose synthesis inhibition and suppressed cell elongation on cortical microtubule orientation was assessed throughout the developmental zones of Arabidopsis thaliana root apex by whole-mount tubulin immunolabeling and confocal microscopy. Apart from the wild-type, thanatos and pom2-4 mutants of Cellulose SynthaseA3 and Cellulose Synthase Interacting1, respectively, were studied. Pharmacological and mechanical approaches inhibiting cell expansion were also applied. Cortical microtubules of untreated wild-type roots were predominantly transverse in the meristematic, transition and elongation root zones. Cellulose-deficient mutants, chemical inhibition of cell expansion, or growth in soil resulted in microtubule reorientation in the elongation zone, wherein cell length was significantly decreased. Combinatorial genetic and chemical suppression of cell expansion extended microtubule reorientation to the transition zone. According to the results, transverse cortical microtubule orientation is established in the meristematic root zone, persisting upon inhibition of cell expansion. Microtubule reorientation in the elongation zone could be attributed to conditional suppression of cell elongation. The differential responsiveness of microtubule orientation to genetic and environmental cues is most likely associated with distinct biophysical traits of the cells among each developmental root zone. PMID:24324790

  10. Differential responsiveness of cortical microtubule orientation to suppression of cell expansion among the developmental zones of Arabidopsis thaliana root apex.

    PubMed

    Panteris, Emmanuel; Adamakis, Ioannis-Dimosthenis S; Daras, Gerasimos; Hatzopoulos, Polydefkis; Rigas, Stamatis

    2013-01-01

    Τhe bidirectional relationship between cortical microtubule orientation and cell wall structure has been extensively studied in elongating cells. Nevertheless, the possible interplay between microtubules and cell wall elements in meristematic cells still remains elusive. Herein, the impact of cellulose synthesis inhibition and suppressed cell elongation on cortical microtubule orientation was assessed throughout the developmental zones of Arabidopsis thaliana root apex by whole-mount tubulin immunolabeling and confocal microscopy. Apart from the wild-type, thanatos and pom2-4 mutants of Cellulose SynthaseA3 and Cellulose Synthase Interacting1, respectively, were studied. Pharmacological and mechanical approaches inhibiting cell expansion were also applied. Cortical microtubules of untreated wild-type roots were predominantly transverse in the meristematic, transition and elongation root zones. Cellulose-deficient mutants, chemical inhibition of cell expansion, or growth in soil resulted in microtubule reorientation in the elongation zone, wherein cell length was significantly decreased. Combinatorial genetic and chemical suppression of cell expansion extended microtubule reorientation to the transition zone. According to the results, transverse cortical microtubule orientation is established in the meristematic root zone, persisting upon inhibition of cell expansion. Microtubule reorientation in the elongation zone could be attributed to conditional suppression of cell elongation. The differential responsiveness of microtubule orientation to genetic and environmental cues is most likely associated with distinct biophysical traits of the cells among each developmental root zone. PMID:24324790

  11. Investigating Root Zone Soil Moisture Using Electrical Resistivity and Crop Modeling

    NASA Astrophysics Data System (ADS)

    Diker, K.; Van Dam, R. L.; Hyndman, D. W.; Kendall, A. D.; Bhardwaj, A. K.; Hamilton, S. K.; Basso, B.

    2011-12-01

    An accurate understanding of soil moisture variability is critical for agroecological modeling and for understanding the implications of climate change for agriculture. In recent years, electrical resistivity (ER) methods have successfully been used to characterize soil moisture in a range of environments, but there remains a need to better link these data to climate variability, soil textural properties, and vegetation and root dynamics. We present results for a novel ER measurement system at the Great Lakes Bioenergy Research Center (GLBRC) in southwest Michigan. Permanent multi-electrode arrays were installed beneath a range of annual and perennial biofuel crop types including corn, soybean, various grasses, and poplars. The ER arrays provide both high spatial resolution 2D and high temporal resolution 1D apparent resistivity data (4 week and 2 hour intervals, respectively). These data, along with a forward simulation of electrical resistivity in the soil column, are used to calibrate and refine root growth dynamics modules within the crop growth and soil hydrologic model SALUS (System Approach to Land Use Sustainability). Simulations are compared to 1D TDR-inferred soil moisture data. Variability in root zone dynamics among different biofuel cropping systems is explored. Total water use and efficiency, along with profile root water extraction, vary considerably among the crops.

  12. Effect of Root-Zone Moisture Variations on Growth of Lettuce and Pea Plants

    NASA Astrophysics Data System (ADS)

    Ilieva, Iliana; Ivanova, Tania

    2008-06-01

    Variations in substrate moisture lead to changes in water and oxygen availability to plant roots. Ground experiments were carried out in the laboratory prototype of SVET-2 Space Greenhouse to study the effect of variation of root-zone moisture conditions on growth of lettuce and pea plants. The effect of transient increase (for 1 day) and drastic increase (waterlogging for 10 days) of substrate moisture was studied with 16-day old pea and 21-day old lettuce plants respectively. Pea height and fresh biomass accumulation were not affected by transient substrate moisture increase. Net photosynthetic rate (Pn) of pea plants showed fast response to substrate moisture variation, while chlorophyll content did not change. Drastic change of substrate moisture suppressed lettuce Pn, chlorophyll biosynthesis and plant growth. These parameters slowly recovered after termination of waterlogging treatment but lettuce yield was greatly affected. The results showed that the most sensitive physiological parameter to substrate moisture variations is photosynthesis.

  13. Mechanistic changes during phytoremediation of perchlorate under different root-zone conditions.

    PubMed

    Nzengung, Valentine A; Penning, Holger; O'Niell, Walter

    2004-01-01

    Two types of hydroponic bioreactors were used to investigate the mechanisnistic changes during phytoremediation of perchlorate under different root-zone conditions. The bioreactors included: (1) an aerobic ebb-and-flow system planted with six willow trees, and (2) individual willow trees grown in sealed root-zone bioreactors. Rhizosphere probes were used to monitor for the first time during phytoremediation of perchlorate, diurnal swings in oxidation-reduction potential (E(H)), dissolved oxygen (DO), and pH. Radiolabeled (36Cl-labeled) perchlorate was used as a tracer in a subset of the sealed bioreactor experiments to quantify the contribution of phytodegradation and rhizodegradation mechanisms. Rhizodegradation accounted for the removal of 96.1 +/- 4.5% (+/-95% CI) of the initial perchlorate dose in experiments conducted in sealed hydroponic bioreactors with low DO and little or no nitrate N. Meanwhile, the contribution of rhizodegradation decreased to 76 +/- 14% (+/-95% CI) when nitrate (a competing terminal electron acceptor) was provided as the nitrogen source. Slower rates of phytoremediation by uptake and phytodegradation were observed under high nitrate concentrations and aerobic conditions, which allowed perchlorate to persist in solution and resulted in a higher fraction uptake by the plant. Specifically, the rate of removal of perchlorate from bulk solution ranged from 5.4 +/- 0.54 to 37.1 +/- 2.25 mg/L/d (+/-SE) in the absence of nitrate to 1.78 +/- 0.27 to 0.46 +/- 0.02 mg/L/d (+/-SE) at high nitrate concentration. The results of this study indicate that the root-zone environment of plants can be manipulated to optimize rhizodegradation and to minimize undesirable processes such as uptake, temporal phytoaccumulation, and slow phytodegradation during phytoremediation of perchlorate. Rhizodegradation is desired because contaminants resident in plant tissue may remain an ecological risk until completely phytodegraded. PMID:15224776

  14. Predicting root zone soil moisture with satellite near-surface moisture data in semiarid environments

    NASA Astrophysics Data System (ADS)

    Manfreda, S.; Baldwin, D. C.; Keller, K.; Smithwick, E. A. H.; Caylor, K. K.

    2015-12-01

    One of the most critical variables in semiarid environment is the soil water content that represents a controlling factor for both ecological and hydrological processes. Soil moisture monitoring over large scales may be extremely useful, but it is limited by the fact that most of the available tools provides only surface measurements not representative of the effective amount of water stored in the subsurface. Therefore, a methodology able to infer root-zone soil moisture starting from surface measurements is highly desirable. Recently a new simplified formulation has been introduced to provide a formal description of the mathematical relationship between surface measurements and root-zone soil moisture (Manfreda et al., HESS 2014). This is a physically based approach derived from the soil water balance equation, where different soil water loss functions have been explored in order to take into account for the non-linear processes governing soil water fluxes. The study highlighted that the soil loss function is the key for such relationship that is therefore strongly influenced by soil type and physiological plant types. The new formulation has been tested on soil moisture based on measurements taken from the African Monsoon Multidisciplinary Analysis (AMMA) and the Soil Climate Analysis Network (SCAN) databases. The method sheds lights on the physical controls for soil moisture dynamics and on the possibility to use such a simplified method for the description of root-zone soil moisture. Furthermore, the method has been also couple with an Enasamble Kalman Filter (EnKF) in order to optimize its performances for the large scale monitoring based the new satellite near-surface moisture data (SMAP). The optimized SMAR-EnKF model does well in both wet and dry climates and across many different soil types (51 SCAN locations) providing a strategy for real-time soil moisture monitoring.

  15. Can SMAP radar observations be used to determine vegetation moisture status and root zone soil moisture?

    NASA Astrophysics Data System (ADS)

    Steele-Dunne, S. C.; Friesen, J.; van de Giesen, N.

    2010-12-01

    Recently, large differences in backscatter between the ascending (evening) and descending (morning) tracks of the wind scatterometer onboard the ERS-1 and ERS-2 satellites have been identified in times and locations of vegetation water stress. This suggests that vegetation might be considered as a source of information rather than a barrier to soil moisture retrieval. The goal here is to develop a quantitative relationship between the magnitude of the diurnal variation in backscatter and the vegetation water status. In turn, this will lead to information on the availability of water in the root zone. Diurnal variation in the backscatter response of vegetation was identified as early as the 1970s and was first observed from space in Seasat-1 scatterometer data in 1982. Subsequent field and laboratory experiments, primarily those of Ulaby and McDonald, have demonstrated that the variation is largely driven by changes in the dielectric properties of vegetation, which in turn depend on vegetation moisture content, sap chemistry and temperature. The magnitude of the diurnal variation in dielectric constant varies considerably within the vegetation itself. Furthermore, the contribution of individual vegetation components to backscatter depends on polarization and frequency. A combination of microwave theory and a numerical study will be used to argue that the morning and evening passes of the L-band radar on the SMAP satellite could be combined to yield information on vegetation water stress and root zone soil moisture. An innovative data assimilation strategy will be presented that could be used to merge the SMAP radar observations with a microwave backscatter model and a resistance-capacitance model to estimate vegetation moisture status and infer root zone soil moisture.

  16. Fate of polycyclic aromatic hydrocarbons in plant-soil systems: Plant responses to a chemical stress in the root zone

    SciTech Connect

    Hoylman, A.M.

    1993-01-01

    Plant uptake and translocation of polycyclic aromatic hydrocarbons (PAHs) from soil was investigated to explore plant-microbial interactions in response to a chemical stress in the root zone. Plant uptake of individual PAHs was examined under laboratory conditions which maximized root exposure. White sweetclover, Melilotus alba, was grown in soils dosed with [sup 14]C-naphthalene, -phenanthrene, -pyrene, and -fluoranthene. The highest [sup 14]C concentrations were associated with roots, with decreasing concentrations observed in stems and leaves; however, the greatest percentage of recoverable [sup 14]C remained in the soil ([ge]86%) for all four PAHs. No evidence of bioaccumulation of the individual PAHs was found in M. alba over a 5-day exposure period. Root uptake and translocation of PAHs from soil to aboveground plant tissues proved to be a limited mechanism for PAH transport into terrestrial food chains. However, root surface sorption of PAHs may be important for plants in soils containing elevated concentrations of PAHs. Consequently, the root-soil interface may be important for plant-microbial interactions in response to a chemical stress. [sup 14]CO[sub 2] pulse-labeling studies provide evidence of a shift in [sup 14]C-allocation from aboveground tissue to the root zone when plants were exposed simultaneously to phenanthrene in soil. In addition, soil respiration and heterotrophic plate counts of rhizosphere microorganisms increased in plants exposed to phenanthrene as compared to controls. This study demonstrates the importance of the root-soil interface for plants growing in PAH contaminated soil and provides supportive evidence for a plant-microbial defense response to chemical toxicants in the root zone. Lipophilic toxicants in soils may reach high concentrations in the root zone, but rhizosphere microbial communities under the influence of the plant may reduce the amount of the compound that is actually taken up by the root.

  17. Water and Heat Balance Model for Predicting Drainage Below the Plant Root Zone

    1989-11-01

    UNSAT-H Version 2.0 is a one-dimensional model that simulates the dynamic processes of infiltration, drainage, redistribution, surface evaporation, and the uptake of water from soil by plants. The model was developed for assessing the water dynamics of arid sites used or proposed for near-surface waste disposal. In particular, the model is used for simulating the water balance of cover systems over buried waste and for estimating the recharge rate (i.e., the drainage rate beneath themore » plant root zone when a sizable vadose zone is present). The mathematical base of the model are Richards'' equation for water flow, Ficks'' law for vapor diffusion, and Fouriers law for heat flow. The simulated profile can be homogeneous or layered. The boundary conditions can be controlled as either constant (potential or temperature) or flux conditions to reflect actual conditions at a given site.« less

  18. Common and distinguishing features of the bacterial and fungal communities in biological soil crusts and shrub root zone soils

    USGS Publications Warehouse

    Steven, Blaire; Gallegos-Graves, La Verne; Yeager, Chris; Belnap, Jayne; Kuske, Cheryl R.

    2013-01-01

    Soil microbial communities in dryland ecosystems play important roles as root associates of the widely spaced plants and as the dominant members of biological soil crusts (biocrusts) colonizing the plant interspaces. We employed rRNA gene sequencing (bacterial 16S/fungal large subunit) and shotgun metagenomic sequencing to compare the microbial communities inhabiting the root zones of the dominant shrub, Larrea tridentata (creosote bush), and the interspace biocrusts in a Mojave desert shrubland within the Nevada Free Air CO2 Enrichment (FACE) experiment. Most of the numerically abundant bacteria and fungi were present in both the biocrusts and root zones, although the proportional abundance of those members differed significantly between habitats. Biocrust bacteria were predominantly Cyanobacteria while root zones harbored significantly more Actinobacteria and Proteobacteria. Pezizomycetes fungi dominated the biocrusts while Dothideomycetes were highest in root zones. Functional gene abundances in metagenome sequence datasets reflected the taxonomic differences noted in the 16S rRNA datasets. For example, functional categories related to photosynthesis, circadian clock proteins, and heterocyst-associated genes were enriched in the biocrusts, where populations of Cyanobacteria were larger. Genes related to potassium metabolism were also more abundant in the biocrusts, suggesting differences in nutrient cycling between biocrusts and root zones. Finally, ten years of elevated atmospheric CO2 did not result in large shifts in taxonomic composition of the bacterial or fungal communities or the functional gene inventories in the shotgun metagenomes.

  19. Innate Immune Responses Activated in Arabidopsis Roots by Microbe-Associated Molecular Patterns[W][OA

    PubMed Central

    Millet, Yves A.; Danna, Cristian H.; Clay, Nicole K.; Songnuan, Wisuwat; Simon, Matthew D.; Werck-Reichhart, Danièle; Ausubel, Frederick M.

    2010-01-01

    Despite the fact that roots are the organs most subject to microbial interactions, very little is known about the response of roots to microbe-associated molecular patterns (MAMPs). By monitoring transcriptional activation of β-glucuronidase reporters and MAMP-elicited callose deposition, we show that three MAMPs, the flagellar peptide Flg22, peptidoglycan, and chitin, trigger a strong tissue-specific response in Arabidopsis thaliana roots, either at the elongation zone for Flg22 and peptidoglycan or in the mature parts of the roots for chitin. Ethylene signaling, the 4-methoxy-indole-3-ylmethylglucosinolate biosynthetic pathway, and the PEN2 myrosinase, but not salicylic acid or jasmonic acid signaling, play major roles in this MAMP response. We also show that Flg22 induces the cytochrome P450 CYP71A12-dependent exudation of the phytoalexin camalexin by Arabidopsis roots. The phytotoxin coronatine, an Ile-jasmonic acid mimic produced by Pseudomonas syringae pathovars, suppresses MAMP-activated responses in the roots. This suppression requires the E3 ubiquitin ligase COI1 as well as the transcription factor JIN1/MYC2 but does not rely on salicylic acid–jasmonic acid antagonism. These experiments demonstrate the presence of highly orchestrated and tissue-specific MAMP responses in roots and potential pathogen-encoded mechanisms to block these MAMP-elicited signaling pathways. PMID:20348432

  20. In vivo antimicrobial activity of 2% chlorhexidine used as a root canal irrigating solution.

    PubMed

    Leonardo, M R; Tanomaru Filho, M; Silva, L A; Nelson Filho, P; Bonifácio, K C; Ito, I Y

    1999-03-01

    The aim of the present study was to evaluate the in vivo antimicrobial activity of 2% chlorhexidine gluconate (FCFRP-USP) used as a root canal irrigating solution in teeth with pulp necrosis and radiographically visible chronic periapical reactions. Culture techniques and measurement of the inhibition zone were used. Twenty-two root canals of incisors and molars of 12 patients were used. After accessing the canal, the first root canal sample was collected with two sterile paper points that were transferred to a tube containing reduced transport fluid. The root canal was instrumented using chlorhexidine solution. A small sterile cotton pellet was placed at the root canal entrance, and the cavity was sealed with zinc oxide-eugenol cement. The canals were maintained empty for 48 h. Three sterile paper points were then introduced to absorb the root canal fluid (second sample). One paper point was placed on an agar plate inoculated with Micrococcus luteus ATCC 9341 and incubated for 24 h at 37 degrees C, and the other two were submitted to microbiological evaluation. Present in 10 cases at baseline, mutans streptococci was reduced by 100% at the second assessment. Treatment showed an efficiency of 77.78% for anaerobic microorganisms at the second assessment. These data suggest that chlorhexidine prevents microbial activity in vivo with residual effects in the root canal system up to 48 h. PMID:10321180

  1. Synaptic Vesicle Proteins and Active Zone Plasticity

    PubMed Central

    Kittel, Robert J.; Heckmann, Manfred

    2016-01-01

    Neurotransmitter is released from synaptic vesicles at the highly specialized presynaptic active zone (AZ). The complex molecular architecture of AZs mediates the speed, precision and plasticity of synaptic transmission. Importantly, structural and functional properties of AZs vary significantly, even for a given connection. Thus, there appear to be distinct AZ states, which fundamentally influence neuronal communication by controlling the positioning and release of synaptic vesicles. Vice versa, recent evidence has revealed that synaptic vesicle components also modulate organizational states of the AZ. The protein-rich cytomatrix at the active zone (CAZ) provides a structural platform for molecular interactions guiding vesicle exocytosis. Studies in Drosophila have now demonstrated that the vesicle proteins Synaptotagmin-1 (Syt1) and Rab3 also regulate glutamate release by shaping differentiation of the CAZ ultrastructure. We review these unexpected findings and discuss mechanistic interpretations of the reciprocal relationship between synaptic vesicles and AZ states, which has heretofore received little attention. PMID:27148040

  2. Gibberellin Is Involved in Inhibition of Cucumber Growth and Nitrogen Uptake at Suboptimal Root-Zone Temperatures

    PubMed Central

    Zhang, Xiaocui; Yu, Xianchang

    2016-01-01

    Suboptimal temperature stress often causes heavy yield losses of vegetables by suppressing plant growth during winter and early spring. Gibberellin acid (GA) has been reported to be involved in plant growth and acquisition of mineral nutrients. However, no studies have evaluated the role of GA in the regulation of growth and nutrient acquisition by vegetables under conditions of suboptimal temperatures in greenhouse. Here, we investigated the roles of GA in the regulation of growth and nitrate acquisition of cucumber (Cucumis sativus L.) plants under conditions of short-term suboptimal root-zone temperatures (Tr). Exposure of cucumber seedlings to a Tr of 16°C led to a significant reduction in root growth, and this inhibitory effect was reversed by exogenous application of GA. Expression patterns of several genes encoding key enzymes in GA metabolism were altered by suboptimal Tr treatment, and endogenous GA concentrations in cucumber roots were significantly reduced by exposure of cucumber plants to 16°C Tr, suggesting that inhibition of root growth by suboptimal Tr may result from disruption of endogenous GA homeostasis. To further explore the mechanism underlying the GA-dependent cucumber growth under suboptimal Tr, we studied the effect of suboptimal Tr and GA on nitrate uptake, and found that exposure of cucumber seedlings to 16°C Tr led to a significant reduction in nitrate uptake rate, and exogenous application GA can alleviate the down-regulation by up regulating the expression of genes associated with nitrate uptake. Finally, we demonstrated that N accumulation in cucumber seedlings under suboptimal Tr conditions was improved by exogenous application of GA due probably to both enhanced root growth and nitrate absorption activity. These results indicate that a reduction in endogenous GA concentrations in roots due to down-regulation of GA biosynthesis at transcriptional level may be a key event to underpin the suboptimal Tr-induced inhibition of root

  3. Gibberellin Is Involved in Inhibition of Cucumber Growth and Nitrogen Uptake at Suboptimal Root-Zone Temperatures.

    PubMed

    Bai, Longqiang; Deng, Huihui; Zhang, Xiaocui; Yu, Xianchang; Li, Yansu

    2016-01-01

    Suboptimal temperature stress often causes heavy yield losses of vegetables by suppressing plant growth during winter and early spring. Gibberellin acid (GA) has been reported to be involved in plant growth and acquisition of mineral nutrients. However, no studies have evaluated the role of GA in the regulation of growth and nutrient acquisition by vegetables under conditions of suboptimal temperatures in greenhouse. Here, we investigated the roles of GA in the regulation of growth and nitrate acquisition of cucumber (Cucumis sativus L.) plants under conditions of short-term suboptimal root-zone temperatures (Tr). Exposure of cucumber seedlings to a Tr of 16°C led to a significant reduction in root growth, and this inhibitory effect was reversed by exogenous application of GA. Expression patterns of several genes encoding key enzymes in GA metabolism were altered by suboptimal Tr treatment, and endogenous GA concentrations in cucumber roots were significantly reduced by exposure of cucumber plants to 16°C Tr, suggesting that inhibition of root growth by suboptimal Tr may result from disruption of endogenous GA homeostasis. To further explore the mechanism underlying the GA-dependent cucumber growth under suboptimal Tr, we studied the effect of suboptimal Tr and GA on nitrate uptake, and found that exposure of cucumber seedlings to 16°C Tr led to a significant reduction in nitrate uptake rate, and exogenous application GA can alleviate the down-regulation by up regulating the expression of genes associated with nitrate uptake. Finally, we demonstrated that N accumulation in cucumber seedlings under suboptimal Tr conditions was improved by exogenous application of GA due probably to both enhanced root growth and nitrate absorption activity. These results indicate that a reduction in endogenous GA concentrations in roots due to down-regulation of GA biosynthesis at transcriptional level may be a key event to underpin the suboptimal Tr-induced inhibition of root

  4. Different responses of MODIS-derived NDVI to root-zone soil moisture in semi-arid and humid regions

    NASA Astrophysics Data System (ADS)

    Wang, Xianwei; Xie, Hongjie; Guan, Huade; Zhou, Xiaobing

    2007-06-01

    SummarySurface representation of the root-zone soil moisture is investigated so that feasibility of using optical remote sensing techniques to indirectly map root-zone soil moisture is assessed. Specifically, covariation of root-zone soil moisture with the normalized difference of vegetation index (NDVI) from Moderate Resolution Imaging Spectroradiometer (MODIS) is studied at three sites (New Mexico, Arizona, and Texas) selected from the Soil Climate Analysis Network (SCAN). The three sites represent two types of vegetation (shrub and grass) and two types of climate conditions: semi-arid (New Mexico and Arizona) and humid (Texas). Collocated deseasonalized time series of soil moistures at five depths (5 cm, 10 cm, 20 cm, 50 cm, and 100 cm) and NDVI (8-day composite in 250 m resolution) during the period of February 2000 through April 2004 were used for correlation analysis. Similar analysis was also conducted for the raw time series for comparison purposes. The linear regression of both the deseasonalized time series and the raw time series was used to estimate root-zone soil moisture. Results show that (1) the deseasonalized time series results in consistent and significant correlation (0.46-0.55) between NDVI and root-zone soil moisture at the three sites; (2) vegetation (NDVI) at the humid site needs longer time (10 days) to respond to soil moisture change than that at the semi-arid sites (5 days or less); (3) the time-series of root-zone soil moisture estimated by a linear regression model based on deseasonalized time series accounts for 42-71% of the observed soil moisture variations for the three sites; and (4) in the semi-arid region, root-zone soil moisture of shrub-vegetated area can be better estimated using NDVI than that of grass-vegetated area.

  5. Root zone salinity and sodicity under seasonal rainfall due to feedback of decreasing hydraulic conductivity

    NASA Astrophysics Data System (ADS)

    van der Zee, S. E. A. T. M.; Shah, S. H. H.; Vervoort, R. W.

    2014-12-01

    Soil sodicity, where the soil cation exchange complex is occupied for a significant fraction by Na+, may lead to vulnerability to soil structure deterioration. With a root zone flow and salt transport model, we modeled the feedback effects of salt concentration (C) and exchangeable sodium percentage (ESP) on saturated hydraulic conductivity Ks(C, ESP) for different groundwater depths and climates, using the functional approach of McNeal (1968). We assume that a decrease of Ks is practically irreversible at a time scale of decades. Representing climate with a Poisson rainfall process, the feedback hardly affects salt and sodium accumulation compared with the case that feedback is ignored. However, if salinity decreases, the much more buffered ESP stays at elevated values, while Ks decreases. This situation may develop if rainfall has a seasonal pattern where drought periods with accumulation of salts in the root zone alternate with wet rainfall periods in which salts are leached. Feedback that affects both drainage/leaching and capillary upward flow from groundwater, or only drainage, leads to opposing effects. If both fluxes are affected by sodicity-induced degradation, this leads to reduced salinity (C) and sodicity (ESP), which suggests that the system dynamics and feedback oppose further degradation. Experiences in the field point in the same direction.

  6. Flexible Microsensor Array for the Root Zone Monitoring of Porous Tube Plant Growth System

    NASA Technical Reports Server (NTRS)

    Sathyan, Sandeep; Kim, Chang-Soo; Porterfield, D. Marshall; Nagle, H. Troy; Brown, Christopher S.

    2004-01-01

    Control of oxygen and water in the root zone is vital to support plant growth in the microgravity environment. The ability to control these sometimes opposing parameters in the root zone is dependent upon the availability of sensors to detect these elements and provide feedback for control systems. In the present study we demonstrate the feasibility of using microsensor arrays on a flexible substrate for dissolved oxygen detection, and a 4-point impedance microprobe for surface wetness detection on the surface of a porous tube (PT) nutrient delivery system. The oxygen microsensor reported surface oxygen concentrations that correlated with the oxygen concentrations of the solution inside the PT when operated at positive pressures. At negative pressures the microsensor shows convergence to zero saturation (2.2 micro mol/L) values due to inadequate water film formation on porous tube surface. The 4-point microprobe is useful as a wetness detector as it provides a clear differentiation between dry and wet surfaces. The unique features of the dissolved oxygen microsensor array and 4-point microprobe include small and simple design, flexibility and multipoint sensing. The demonstrated technology is anticipated to provide low cost, and highly reliable sensor feedback monitoring plant growth nutrient delivery system in both terrestrial and microgravity environments.

  7. Simulating sunflower canopy temperatures to infer root-zone soil water potential

    NASA Technical Reports Server (NTRS)

    Choudhury, B. J.; Idso, S. B.

    1983-01-01

    A soil-plant-atmosphere model for sunflower (Helianthus annuus L.), together with clear sky weather data for several days, is used to study the relationship between canopy temperature and root-zone soil water potential. Considering the empirical dependence of stomatal resistance on insolation, air temperature and leaf water potential, a continuity equation for water flux in the soil-plant-atmosphere system is solved for the leaf water potential. The transpirational flux is calculated using Monteith's combination equation, while the canopy temperature is calculated from the energy balance equation. The simulation shows that, at high soil water potentials, canopy temperature is determined primarily by air and dew point temperatures. These results agree with an empirically derived linear regression equation relating canopy-air temperature differential to air vapor pressure deficit. The model predictions of leaf water potential are also in agreement with observations, indicating that measurements of canopy temperature together with a knowledge of air and dew point temperatures can provide a reliable estimate of the root-zone soil water potential.

  8. Ecohydrology of root zone water fluxes and soil development in complex semiarid rangelands

    NASA Astrophysics Data System (ADS)

    Gutiérrez-Jurado, Hugo A.; Vivoni, Enrique R.; Harrison, J. Bruce J.; Guan, Huade

    2006-10-01

    In semiarid complex terrain, the landscape creates spatial niches for different types of vegetation through the effects of aspect, slope and curvature on the water and energy balance at the soil surface. The ecohydrology of rangelands is defined by the interaction of soils, plants and climate occurring on a topographic surface. While these interactions have been studied for subtle terrain, little is known about the controls exerted by terrain position, in particular terrain aspect, on ecosystem processes. Furthermore, differential plant establishment can lead to measurable differences in rates of soil development, which in turn can affect soil hydraulic properties and the surface water balance. In this study, we outline the physical mechanisms affecting plant establishment, soil development and hydrologic fluxes in semiarid complex terrain. We illustrate the interactions between vegetation, root zone water fluxes and soil development using, as an example, a small drainage basin in the Sevilleta National Wildlife Refuge (SNWR), New Mexico. In the study basin, opposing hillslopes are characterized by marked differences in ecosystem composition and soil profile properties, with the north-facing hillslope dominated by one seed juniper (Juniperus monosperma) and the south-facing slope consisting of creosote bush (Larrea tridentata). We assess the effect of terrain aspect on root zone hydrologic fluxes and soil development in the two ecosystems by using soil observations, hydraulic properties from pedotransfer functions (PTFs), and numerical modelling of vadose zone fluxes. Modelling results show marked differences in root zone fluxes in the north-facing juniper and south-facing creosote ecosystems. Differences in the amplitude and frequency of soil water content and pressure correspond to changes in soil profile and vegetation characteristics. For example, soil properties of the calcium carbonate (CaCO3) horizons and differential plant water uptake impact the simulated

  9. High-resolution prediction of soil available water content within the crop root zone

    NASA Astrophysics Data System (ADS)

    Haghverdi, Amir; Leib, Brian G.; Washington-Allen, Robert A.; Ayers, Paul D.; Buschermohle, Michael J.

    2015-11-01

    A detailed understanding of soil hydraulic properties, particularly soil available water content (AWC) within the effective root zone, is needed to optimally schedule irrigation in fields with substantial spatial heterogeneity. However, it is difficult and time consuming to directly measure soil hydraulic properties. Therefore, easily collected and measured soil properties, such as soil texture and/or bulk density, that are well correlated with hydraulic properties are used as proxies to develop pedotransfer functions (PTF). In this study, multiple modeling scenarios were developed and evaluated to indirectly predict high resolution AWC maps within the effective root zone. The modeling techniques included kriging, co-kriging, regression kriging, artificial neural networks (NN) and geographically weighted regression (GWR). The efficiency of soil apparent electrical conductivity (ECa) as proximal data in the modeling process was assessed. There was a good agreement (root mean square error (RMSE) = 0.052 cm3 cm-3 and r = 0.88) between observed and point prediction of water contents using pseudo continuous PTFs. We found that both GWR (mean RMSE = 0.062 cm3 cm-3) and regression kriging (mean RMSE = 0.063 cm3 cm-3) produced the best water content maps with these accuracies improved up to 19% when ECa was used as an ancillary soil attribute in the interpolation process. The maps indicated fourfold differences in AWC between coarse- and fine-textured soils across the study site. This provided a template for future investigations for evaluating the efficiency of variable rate irrigation management scenarios in accounting for the spatial heterogeneity of soil hydraulic attributes.

  10. Numerical Modeling of Water Fluxes in the Root Zone of Irrigated Pecan

    NASA Astrophysics Data System (ADS)

    Shukla, M. K.; Deb, S.

    2010-12-01

    Information is still limited on the coupled liquid water, water vapor, heat transport and root water uptake for irrigated pecan. Field experiments were conducted in a sandy loam mature pecan field in Las Cruces, New Mexico. Three pecan trees were chosen to monitor diurnal soil water content under the canopy (approximately half way between trunk and the drip line) and outside the drip line (bare spot) along a transect at the depths of 5, 10, 20, 40, and 60 cm using TDR sensors. Soil temperature sensors were installed at an under-canopy locations and bare spot to monitor soil temperature data at depths of 5, 10, 20, and 40 cm. Simulations of the coupled transport of liquid water, water vapor, and heat with and without root water uptake were carried out using the HYDRUS-1D code. Measured soil hydraulic and thermal properties, continuous meteorological data, and pecan characteristics, e.g. rooting depth, leaf area index, were used in the model simulations. Model calibration was performed for a 26-day period from DOY 204 through DOY 230, 2009 based on measured soil water content and soil temperature data at different soil depths, while the model was validated for a 90-day period from DOY 231 through DOY 320, 2009 at bare spot. Calibrated parameters were also used to apply the model at under-canopy locations for a 116-day period from DOY 204 to 320. HYDRUS-1D simulated water contents and soil temperatures correlated well with the measured data at each depth. Numerical assessment of various transport mechanisms and quantitative estimates of isothermal and thermal water fluxes with and without root water uptake in the unsaturated zone within canopy and bare spot is in progress and will be presented in the conference.

  11. Anxiolytic and nootropic activity of Vetiveria zizanioides roots in mice

    PubMed Central

    Nirwane, Abhijit M.; Gupta, Purnima V.; Shet, Jitesh H.; Patil, Sandeep B.

    2015-01-01

    Background: Vetiveria zizanioides (VZ) (family: Poaceae), an aromatic plant commonly known as “Vetiver” has been used for various ailments. Concerning the various ailments being listed as the traditional uses of VZ, no mention about anxiety and memory was found. Objective: The present study examined the anxiolytic and memory enhancing activity of ethanolic extract of V. zizanioides (EEVZ) dried roots in mice. Materials and Methods: Activity of EEVZ was assessed using models of anxiety (elevated plus-maze [EPM], light/dark test, hole board test, marble-burying test) and learning and memory (EPM, passive shock avoidance paradigm). Results: EEVZ at doses of 100, 200, and 300 mg/kg b.w. illustrated significant anxiolytic activity indicated by increase in time spent and number of entries in open arm, time spent in lightened area, number of head poking and number marble buried when compared to that of diazepam (1 mg/kg b.w.), a reference standard. The same treatment showed a significant decrease in transfer latency to reach open arm, shock-free zone, and number of mistakes when compared to that of scopolamine (0.3 mg/kg b.w.). EEVZ in all the doses (100, 200, and 300 mg/kg b.w.) significantly decreased mortality in sodium nitrite (250 mg/kg b.w.) induced hypoxia and also significantly increases contraction induced by acetylcholine on rat ileum preparation. Conclusion: The result emanated in the present investigation revealed EEVZ possesses significant anxiolytic and nootropic activity by possibly interplaying with neurotransmitters implicated in anxiety and learning and memory. PMID:26604550

  12. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.

    PubMed

    Kim, Eun-Sol; Choe, Goh; Sebastian, Jose; Ryu, Kook Hui; Mao, Linyong; Fei, Zhangjun; Lee, Ji-Young

    2016-06-01

    Root apical meristem (RAM) drives post-embryonic root growth by constantly supplying cells through mitosis. It is composed of stem cells and their derivatives, the transit-amplifying (TA) cells. Stem cell organization and its maintenance in the RAM are well characterized, however, their relationships with TA cells remain unclear. SHORTROOT (SHR) is critical for root development. It patterns cell types and promotes the post-embryonic root growth. Defective root growth in the shr has been ascribed to the lack of quiescent center (QC), which maintains the surrounding stem cells. However, our recent investigation indicated that SHR maintains TA cells independently of QC by modulating PHABULOSA (PHB) through miRNA165/6. PHB controls TA cell activity by modulating cytokinin levels and type B Arabidopsis Response Regulator activity, in a dosage-dependent manner. To further understand TA cell regulation, we conducted a shr suppressor screen. With an extensive mutagenesis screen followed by genome sequencing of a pooled F2 population, we discovered two suppressor alleles with mutations in HAWAIIAN SKIRT (HWS). HWS, encoding an F-box protein with kelch domain, is expressed, partly depending on SHR, in the root cap and in the pericycle of the differentiation zone. Interestingly, root growth in the shr hws was more active than the wild-type roots for the first 7 days after germination, without recovering QC. Contrary to shr phb, shr hws did not show a recovery of cytokinin signaling. These indicate that HWS affects QC-independent TA cell activities through a pathway distinctive from PHB. PMID:26968317

  13. Assimilation of Smos Observations to Generate a Prototype SMAP Level 4 Surface and Root-Zone Soil Moisture Product

    NASA Technical Reports Server (NTRS)

    Reichle, Rolf H.; De Lannoy, Gabrielle J. M.; Crow, Wade T.; Koster, Randal D.; Kimball, John

    2012-01-01

    The Soil Moisture Active and Passive (SMAP; [1]) mission is being implemented by NASA for launch in October 2014. The primary science objectives of SMAP are to enhance understanding of land surface controls on the water, energy and carbon cycles, and to determine their linkages. Moreover, the high-resolution soil moisture mapping provided by SMAP has practical applications in weather and seasonal climate prediction, agriculture, human health, drought and flood decision support. The Soil Moisture and Ocean Salinity (SMOS; [2]) mission was launched by ESA in November 2009 and has since been observing L-band (1.4 GHz) upwelling passive microwaves. In this paper we describe our use of SMOS brightness temperature observations to generate a prototype of the planned SMAP Level 4 Surface and Root-zone Soil Moisture (L4_SM) product [5].

  14. Methyl jasmonate affects morphology, number and activity of endoplasmic reticulum bodies in Raphanus sativus root cells.

    PubMed

    Gotté, Maxime; Ghosh, Rajgourab; Bernard, Sophie; Nguema-Ona, Eric; Vicré-Gibouin, Maïté; Hara-Nishimura, Ikuko; Driouich, Azeddine

    2015-01-01

    The endoplasmic reticulum (ER) bodies are ER-derived structures that are found in Brassicaceae species and thought to play a role in defense. Here, we have investigated the occurrence, distribution and function of ER bodies in root cells of Raphanus sativus using a combination of microscopic and biochemical methods. We have also assessed the response of ER bodies to methyl jasmonate (MeJA), a phytohormone that mediates plant defense against wounding and pathogens. Our results show that (i) ER bodies do occur in different root cell types from the root cap region to the differentiation zone; (ii) they do accumulate a PYK10-like protein similar to the major marker protein of ER bodies that is involved in defense in Arabidopsis thaliana; and (iii) treatment of root cells with MeJA causes a significant increase in the number of ER bodies and the activity of β-glucosidases. More importantly, MeJA was found to induce the formation of very long ER bodies that results from the fusion of small ones, a phenomenon that has not been reported in any other study so far. These findings demonstrate that MeJA impacts the number and morphology of functional ER bodies and stimulates ER body enzyme activities, probably to participate in defense responses of radish root. They also suggest that these structures may provide a defensive system specific to root cells. PMID:25305245

  15. Improving agricultural drought monitoring in West Africa using root zone soil moisture estimates derived from NDVI

    NASA Astrophysics Data System (ADS)

    McNally, A.; Funk, C. C.; Yatheendradas, S.; Michaelsen, J.; Cappelarere, B.; Peters-Lidard, C. D.; Verdin, J. P.

    2012-12-01

    The Famine Early Warning Systems Network (FEWS NET) relies heavily on remotely sensed rainfall and vegetation data to monitor agricultural drought in Sub-Saharan Africa and other places around the world. Analysts use satellite rainfall to calculate rainy season statistics and force crop water accounting models that show how the magnitude and timing of rainfall might lead to above or below average harvest. The Normalized Difference Vegetation Index (NDVI) is also an important indicator of growing season progress and is given more weight over regions where, for example, lack of rain gauges increases error in satellite rainfall estimates. Currently, however, near-real time NDVI is not integrated into a modeling framework that informs growing season predictions. To meet this need for our drought monitoring system a land surface model (LSM) is a critical component. We are currently enhancing the FEWS NET monitoring activities by configuring a custom instance of NASA's Land Information System (LIS) called the FEWS NET Land Data Assimilation System. Using the LIS Noah LSM, in-situ measurements, and remotely sensed data, we focus on the following questions: What is the relationship between NDVI and in-situ soil moisture measurements over the West Africa Sahel? How can we use this relationship to improve modeled water and energy fluxes over the West Africa Sahel? We investigate soil moisture and NDVI cross-correlation in the time and frequency domain to develop a transfer function model to predict soil moisture from NDVI. This work compares sites in southwest Niger, Benin, Burkina Faso, and Mali to test the generality of the transfer function. For several sites with fallow and millet vegetation in the Wankama catchment in southwest Niger we developed a non-parametric frequency response model, using NDVI inputs and soil moisture outputs, that accurately estimates root zone soil moisture (40-70cm). We extend this analysis by developing a low order parametric transfer function

  16. Responses of canopy transpiration and canopy conductance of peach (Prunus persica) trees to alternate partial root zone drip irrigation

    NASA Astrophysics Data System (ADS)

    Gong, Daozhi; Kang, Shaozhong; Zhang, Jianhua

    2005-08-01

    We investigated canopy transpiration and canopy conductance of peach trees under three irrigation patterns: fixed 1/2 partial root zone drip irrigation (FPRDI), alternate 1/2 partial root zone drip irrigation (APRDI) and full root zone drip irrigation (FDI). Canopy transpiration was measured using heat pulse sensors, and canopy conductance was calculated using the Jarvis model and the inversion of the Penman-Monteith equation. Results showed that the transpiration rate and canopy conductance in FPRDI and APRDI were smaller than those in FDI. More significantly, the total irrigation amount was greatly reduced, by 34.7% and 39.6%, respectively for APRDI and FPRDI in the PRDI (partial root zone drip irrigation) treatment period. The daily transpiration was linearly related to the reference evapotranspiration in the three treatments, but daily transpiration of FDI is more than that of APRDI and FPRDI under the same evaporation demand, suggesting a restriction of transpiration water loss in the APRDI and FPRDI trees. FDI needed a higher soil water content to carry the same amount of transpiration as the APRDI and FPRDI trees, suggesting the hydraulic conductance of roots of APRDI and FPRDI trees was enhanced, and the roots had a greater water uptake than in FDI when the average soil water content in the root zone was the same. By a comparison between the transpiration rates predicted by the Penman-Monteith equation and the measured canopy transpiration rates for 60 days during the experimental period, an excellent correlation along the 1:1 line was found for all the treatments (R2 > 0.80), proving the reliability of the methodology.

  17. Prediction of Root Zone Soil Moisture using Remote Sensing Products and In-Situ Observation under Climate Change Scenario

    NASA Astrophysics Data System (ADS)

    Singh, G.; Panda, R. K.; Mohanty, B.

    2015-12-01

    Prediction of root zone soil moisture status at field level is vital for developing efficient agricultural water management schemes. In this study, root zone soil moisture was estimated across the Rana watershed in Eastern India, by assimilation of near-surface soil moisture estimate from SMOS satellite into a physically-based Soil-Water-Atmosphere-Plant (SWAP) model. An ensemble Kalman filter (EnKF) technique coupled with SWAP model was used for assimilating the satellite soil moisture observation at different spatial scales. The universal triangle concept and artificial intelligence techniques were applied to disaggregate the SMOS satellite monitored near-surface soil moisture at a 40 km resolution to finer scale (1 km resolution), using higher spatial resolution of MODIS derived vegetation indices (NDVI) and land surface temperature (Ts). The disaggregated surface soil moisture were compared to ground-based measurements in diverse landscape using portable impedance probe and gravimetric samples. Simulated root zone soil moisture were compared with continuous soil moisture profile measurements at three monitoring stations. In addition, the impact of projected climate change on root zone soil moisture were also evaluated. The climate change projections of rainfall were analyzed for the Rana watershed from statistically downscaled Global Circulation Models (GCMs). The long-term root zone soil moisture dynamics were estimated by including a rainfall generator of likely scenarios. The predicted long term root zone soil moisture status at finer scale can help in developing efficient agricultural water management schemes to increase crop production, which lead to enhance the water use efficiency.

  18. Spatial and Temporal Variability in Nitrate Concentration below the Root Zone in an Almond Orchard and its Implications for Potential Groundwater Contamination

    NASA Astrophysics Data System (ADS)

    Baram, S.; Couvreur, V.

    2015-12-01

    Spatial and Temporal Variability in Nitrate Concentration below the Root Zone in an Almond Orchard and its Implications for Potential Groundwater Contamination S. Baram1, M. Read1, D. Smart2, T. Harter1, J Hopmans11Department of Land, Air & Water Resources University of California Davis 2Department of Viticulture and Enology University of California Davis Estimates of water and fertilizer losses below the root zone of nitrogen (N) intensive agricultural orchard crops are major concern in groundwater protection. However, microscopic and macroscopic heterogeneity in unsaturated soils make accurate loss estimates very challenging. In this study we aimed to examine field scale variability in nitrate (NO3-) losses below the root zone (>250cm) of a 15 years old almond orchard in Madera county California. Based on a soil variability survey, tensiometers and solution samplers were installed at 17 locations around the 40 acre orchard. The hydraulic potential and the NO3- concentrations were monitored over two growing seasons. Nitrate concentrations varied spatially and temporarily, and ranged from below to more than 30 times higher than the drinking water contamination standard of >10 mg NO3--N L-1. Principal component analysis of the relations between the NO3- concentration, presence of a hard pan in the subsurface, its depth and thickness, and the fertigation and irrigation events indicated that none of these factors explained the observed variability in pore-water NO3- concentrations, with hard pan being the most dominant factor. Throughout the irrigation season minimal leaching was observed, yet post-harvest and preseason flooding events led to deep drainage. Due to the high spatial and temporal variability in the NO3- concentration and the potential for deep drainage following a wet winter or flooding event we conclude that the most efficient way to protect ground water is by transitioning to high frequency low nitrogen fertigation which would retain NO3-in the active

  19. Reprocessed COCORP southern Appalachian reflection data: Root zone to Coastal Plain

    NASA Astrophysics Data System (ADS)

    Iverson, William P.; Smithson, Scott B.

    1983-07-01

    COCORP (Consortium for Continental Reflection Profiling) seismic reflection data from the Atlantic Coastal Plain and eastern Piedmont in Georgia have been reprocessed and interpreted. Dipping events correlated with the master decollement root zone may be the only features that can be correlated with other reflection lines. Farther southeast on the Coastal Plain the shallow section is improved to produce reflections corresponding to the base of the Coastal Plain. A Triassic basin is confirmed to be more than 2 km deep and is the only major basin accurately revealed by the seismic lines. Improvement of the shallow seismic data is important to understanding the deep data. Some apparently deep reflections are probably produced from within the shallow Coastal Plain. Even though these shallow data have been improved, the Augusta fault is not interpreted as a major reflective feature. *Present address: Sohio Research and Development, One Lincoln Center, Dallas, Texas, 75240

  20. [DREZ (dorsal root entry zone) surgery for the treatment of the postherpetic intercostal neuralgia].

    PubMed

    Spaić, M; Ivanović, S; Slavik, E; Antić, B

    2004-01-01

    Postherpetic intercostal neuralgia proved to be an incapacitating pain often recalcitrant to therapy. Acute pain that accompanied Herpes zoster usually subsides spontaneously but in 10% of patients the pain persists and intensifies. The incidence of postherpetic neuralgia incrises up to 50% among elder patients. We report the case of the two 42 and 48 yers old male patient who were succesfuly relieved from the chronic postherpetic intercostal neuralgia employing the DREZ surgery (Dorzal Root Entry Zone lesion). DREZ surgicall treatment of this pain should be considered when medical therapies failed in controling pain. Subjective sensory nature of the pain should play an important role in setting the indication for DREZ surgical treatment. The most favourable pain pattern for DREZ operation is the pain of intermittent rhythm, confined theritory accompanied with the phenomenon of alodinic pain that could be provoked from the pain theritory. PMID:16018410

  1. Induction of curvature in maize roots by calcium or by thigmostimulation: role of the postmitotic isodiametric growth zone

    NASA Technical Reports Server (NTRS)

    Ishikawa, H.; Evans, M. L.

    1992-01-01

    We examined the response of primary roots of maize (Zea mays L. cv Merit) to unilateral application of calcium with particular attention to the site of application, the dependence on growth rate, and possible contributions of thigmotropic stimulation during application. Unilateral application of agar to the root cap induced negative curvature whether or not the agar contained calcium. This apparent thigmotropic response was enhanced by including calcium in the agar. Curvature away from objects applied unilaterally to the extreme root tip occurred both in intact and detipped roots. When agar containing calcium chloride was applied to one side of the postmitotic isodiametric growth zone ( a region between the apical meristem and the elongation zone), the root curved toward the side of application. This response could not be induced by plain agar. We conclude that curvature away from calcium applied to the root tip results from a thigmotropic response to stimulation during application. In contrast, curvature toward the calcium applied to the postmitotic isodiametric growth zone results from direct calcium-induced inhibition of growth.

  2. Persistence and memory timescales in root-zone soil moisture dynamics

    NASA Astrophysics Data System (ADS)

    Ghannam, Khaled; Nakai, Taro; Paschalis, Athanasios; Oishi, Christopher A.; Kotani, Ayumi; Igarashi, Yasunori; Kumagai, Tomo'omi; Katul, Gabriel G.

    2016-02-01

    The memory timescale that characterizes root-zone soil moisture remains the dominant measure in seasonal forecasts of land-climate interactions. This memory is a quasi-deterministic timescale associated with the losses (e.g., evapotranspiration) from the soil column and is often interpreted as persistence in soil moisture states. Persistence, however, represents a distribution of time periods where soil moisture resides above or below some prescribed threshold and is therefore inherently probabilistic. Using multiple soil moisture data sets collected at high resolution (subhourly) across different biomes and climates, this paper explores the differences, underlying dynamics, and relative importance of memory and persistence timescales in root-zone soil moisture. A first-order Markov process, commonly used to interpret soil moisture fluctuations derived from climate simulations, is also used as a reference model. Persistence durations of soil moisture below the plant water-stress level (chosen as the threshold), and the temporal spectrum of upcrossings and downcrossings of this threshold, are compared to the memory timescale and spectrum of the full time series, respectively. The results indicate that despite the differences between meteorological drivers, the spectrum of threshold-crossings is similar across sites, and follows a unique relation with that of the full soil moisture series. The distribution of persistence times exhibits an approximate stretched exponential type and reflects a likelihood of exceeding the memory at all sites. However, the rainfall counterpart of these distributions shows that persistence of dry atmospheric periods is less likely at sites with long soil moisture memory. The cluster exponent, a measure of the density of threshold-crossings in a time frame, reveals that the clustering tendency in rainfall events (on-off switches) does not translate directly to clustering in soil moisture. This is particularly the case in climates where

  3. Roots shaping their microbiome: global hotspots for microbial activity.

    PubMed

    Reinhold-Hurek, Barbara; Bünger, Wiebke; Burbano, Claudia Sofía; Sabale, Mugdha; Hurek, Thomas

    2015-01-01

    Land plants interact with microbes primarily at roots. Despite the importance of root microbial communities for health and nutrient uptake, the current understanding of the complex plant-microbe interactions in the rhizosphere is still in its infancy. Roots provide different microhabitats at the soil-root interface: rhizosphere soil, rhizoplane, and endorhizosphere. We discuss technical aspects of their differentiation that are relevant for the functional analysis of their different microbiomes, and we assess PCR (polymerase chain reaction)-based methods to analyze plant-associated bacterial communities. Development of novel primers will allow a less biased and more quantitative view of these global hotspots of microbial activity. Based on comparison of microbiome data for the different root-soil compartments and on knowledge of bacterial functions, a three-step enrichment model for shifts in community structure from bulk soil toward roots is presented. To unravel how plants shape their microbiome, a major research field is likely to be the coupling of reductionist and molecular ecological approaches, particularly for specific plant genotypes and mutants, to clarify causal relationships in complex root communities. PMID:26243728

  4. Experience with 25 years of dorsal root entry zone lesioning at a single institution

    PubMed Central

    Awad, Ahmed J.; Forbes, Jonathan A.; Jermakowicz, Walter; Eli, Ilyas M.; Blumenkopf, Bennett; Konrad, Peter

    2013-01-01

    Background: The authors sought to assess long-term efficacy, surgical morbidity, and postoperative quality of life in patients who have undergone dorsal root entry zone (DREZ) lesioning. Methods: We utilized the electronic chart system at our institution to identify patients who underwent DREZ lesioning since 1986. Of the patients that were able to be identified, 19 (12 males and 7 females) patients were able to be contacted at time of data collection. The mean age was 47 years (ranging from 23 to 70 years) with average preoperative pain duration of 12.5 years and average follow-up of 4.9 years. Results: Of the 19 patients we were able to contact, 7 (37%) patients experienced “excellent” postoperative (complete) pain relief with another 6 (32%) reporting “good” improvement. Three (16%) patients reported “mild” pain relief, while three (16%) patients reported poor results. Sixteen patients (84%) stated they would undergo DREZ lesioning again, if given a choice. Two patients (11%) had objective evidence of a new, mild motor deficit postoperatively. More than half of the patients, who answered, reported “good” quality of life. Two-sample unequal variance t-test showed no statistically significant difference in pain improvement between brachial plexus avulsion and end-zone spinal cord injury pain. Conclusion: With appropriate patient selection, DREZ lesioning is an efficacious and durable procedure that can be performed with low morbidity and good patient outcomes. PMID:23772334

  5. Antiinflammatory and analgesic activities of Zizyphus lotus root barks.

    PubMed

    Borgi, W; Ghedira, K; Chouchane, N

    2007-01-01

    The root barks of Zizyphus lotus were extracted with water, chloroform, ethyl acetate and methanol to determine their antiinflammatory and analgesic activities. Aqueous extract (50, 100 and 200 mg/kg) given intraperitoneally (i.p.) showed a significant and dose-dependent antiinflammatory and analgesic activity. PMID:17107758

  6. Hypolipidemic activity of Hibiscus rosa sinensis root in rats.

    PubMed

    Kumar, Vishnu; Singh, Pradyumn; Chander, Ramesh; Mahdi, Farzana; Singh, Sushma; Singh, Ranjana; Khanna, Ashok Kumar; Saxena, Jitendra Kumar; Mahdi, Abbas Ali; Singh, Vinod Kumar

    2009-12-01

    The hypolipidemic activity of Hibiscus rosa sinensis (family Malvaceae) root extract was studied on triton and cholesterol-rich high fat diet (HFD) induced models of hyperlipidemia in rats. In triton WR-1339-induced hyperlipidemia, feeding with root extract (500 mg/kg body wt/day p.o.) exerted lipid-lowering effect, as assessed by reversal of plasma levels of total cholesterol (TC), phospholipids (PL) and triglycerides (TG) and reactivation of post-heparin lipolytic activity (PHLA) of plasma. The other model was fed with cholesterol-rich HFD and root extract (500 mg/kg body wt/ day p.o.) simultaneously for 30 days. This also caused lowering of lipid levels in plasma and liver homogenate and reactivation of plasma PHLA and hepatic total lipoprotein lipase activity. The hypolipidemic activity of Hibiscus rosa sinensis root was compared with a standard drug guggulipid (200 mg/kg body wt/day p.o.), a known lipid- lowering agent in both models. Histopathological findings in rat liver supported the protective role of H. rosa sinensis root extract in preventing cholesterol-rich HFD-induced hepatic steatosis. PMID:20361715

  7. Anti-angiogenic activity of Entada africana root.

    PubMed

    Germanò, Maria Paola; Certo, Giovanna; D'Angelo, Valeria; Sanogo, Rokia; Malafronte, Nicola; De Tommasi, Nunziatina; Rapisarda, Antonio

    2015-01-01

    Entada africana roots are used in African traditional medicine for various diseases including inflammation. This application may be mediated through anti-angiogenic effects. Thus, in this study the anti-angiogenic activity of E. africana root extracts (n-hexane, chloroform, chloroform/methanol and methanol) was preliminarily evaluated by the quantitative determination of endogenous alkaline phosphatase in zebrafish embryos. A bioactivity-guided fractionation of chloroform/methanol extract yielded apigenin and robinetin as the main constituents from the most active fractions. In addition, a marked reduction on capillary formation was evidenced in chick chorioallantoic membrane after treatment with the active fractions or isolated compounds. Results obtained in this study suggest that the anti-angiogenic effects of E. africana root may account for its use in inflammatory diseases and other related pathological conditions. PMID:25482106

  8. Calibration of the Root Zone Water Quality Model and Application of Data Assimilation Techniques to Estimate Profile Soil Moisture

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Estimation of soil moisture has received considerable attention in the areas of hydrology, agriculture, meteorology and environmental studies because of its role in the partitioning water and energy at the land surface. In this study, the USDA, Agricultural Research Service, Root Zone Water Quality ...

  9. Determination of root-zone water storage in a desert woodland using a two-layer moisture balance model

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Root-zone water storage (RWS) is a fundamental component of the soil-plant-atmosphere continuum. In the lower reaches of arid river basins in inland China, low water recharge and hence low RWS have been associated with a series of ecological and environmental problems. Developing an improved unders...

  10. Fate of polycyclic aromatic hydrocarbons in plant-soil systems: Plant responses to a chemical stress in the root zone

    SciTech Connect

    Hoylman, A.M.; Walton, B.T.

    1994-01-01

    Under laboratory conditions selected to maximize root uptake, plant tissue distribution of PAH-derived {sup 14}C was largely limited to root tissue of Malilotus alba. These results suggest that plant uptake of PAHs from contaminated soil via roots, and translocation to aboveground plant tissues (stems and leaves), is a limited mechanism for transport into terrestrial food chains. However, these data also indicate that root surface sorption of PAHs may be important for plants grown in soils containing elevated concentration PAHs. Root surface sorption of PAHs may be an important route of exposure for plants in soils containing elevated concentrations of PAHS. Consequently, the root-soil interface may be the site of plant-microbial interactions in response to a chemical stress. In this study, evidence of a shift in carbon allocation to the root zone of plants exposed to phenanthrene and corresponding increases in soil respiration and heterotrophic plate counts provide evidence of a plant-microbial response to a chemical stress. The results of this study establish the importance of the root-soil interface for plants growing in PAH contaminated soil and indicate the existence of plant-microbial interactions in response to a chemical stress. These results may provide new avenues of inquiry for studies of plant toxicology, plant-microbial interactions in the rhizosphere, and environmental fates of soil contaminants. In addition, the utilization of plants to enhance the biodegradation of soil contaminants may require evaluation of plant physiological changes and plant shifts in resource allocation.

  11. Antifungal activity and composition of essential oils of Conyza canadensis herbs and roots.

    PubMed

    Veres, Katalin; Csupor-Löffler, Boglárka; Lázár, Andrea; Hohmann, Judit

    2012-01-01

    Essential oils from herbs and roots of Conyza canadensis (horseweed), collected in Hungary, were obtained by hydrodistillation. The chemical compositions of the oils were analysed by combination of GC and GC/MS. The major constituent of the oil obtained from the aerial parts of horseweed was limonene (78%), while the main component of root oil was 2Z,8Z-matricaria ester. The antimicrobial activities of the oils were tested on Gram-positive (Enterococcus faecalis, Staphylococcus aureus, and Streptococcus pyogenes), Gram-negative (Escherichia coli, Pseudomonas aeruginosa) bacteria, reference fungal strains, and fungal strains isolated from patients (Candida, Cryptococcus, Trichophyton, Rhodotorula, and Aspergillus) by agar disc diffusion and broth dilution methods. None of the oils showed any activity against the tested bacterial strains, but exhibited moderate-to-strong activity against all fungi with the only exception of A. fumigatus. The highest zone of inhibition was observed in case of Cryptococcus neoformans and Trichophyton interdigitalis. PMID:23049473

  12. Antifungal Activity and Composition of Essential Oils of Conyza canadensis Herbs and Roots

    PubMed Central

    Veres, Katalin; Csupor-Löffler, Boglárka; Lázár, Andrea; Hohmann, Judit

    2012-01-01

    Essential oils from herbs and roots of Conyza canadensis (horseweed), collected in Hungary, were obtained by hydrodistillation. The chemical compositions of the oils were analysed by combination of GC and GC/MS. The major constituent of the oil obtained from the aerial parts of horseweed was limonene (78%), while the main component of root oil was 2Z,8Z-matricaria ester. The antimicrobial activities of the oils were tested on Gram-positive (Enterococcus faecalis, Staphylococcus aureus, and Streptococcus pyogenes), Gram-negative (Escherichia coli, Pseudomonas aeruginosa) bacteria, reference fungal strains, and fungal strains isolated from patients (Candida, Cryptococcus, Trichophyton, Rhodotorula, and Aspergillus) by agar disc diffusion and broth dilution methods. None of the oils showed any activity against the tested bacterial strains, but exhibited moderate-to-strong activity against all fungi with the only exception of A. fumigatus. The highest zone of inhibition was observed in case of Cryptococcus neoformans and Trichophyton interdigitalis PMID:23049473

  13. [Performance characteristics of root zone moisture and water potential sensors for greenhouses in the conditions of extended space flight].

    PubMed

    Podolskiy, I G; Strugov, O M; Bingham, G E

    2014-01-01

    The investigation was performed using greenhouse Lada in the Russian segment of the International space station (ISS RS) as part of space experiment Plants-2 during ISS missions 5 through to 22. A set of 6 point moisture sensors embedded in the root zone (turface particles of 1-2 mm in diam.) and 4 tensiometers inside root modules (RM) were used to monitor moisture content and water potential in the root zone. The purpose was to verify functionality and to test performance of the sensors in the spacefight environment. It was shown that with the average RZ moisture content of 80% the measurement error of the sensors do not exceed ± 1.5%. Dynamic analysis of the tensiometers measurements attests that error in water potential measurements does not exceed ± 111 Pa. PMID:26035998

  14. Population Changes of Tylenchulus semipenetrans Under Localized Versus Uniform Drought in the Citrus Root Zone

    PubMed Central

    Duncan, L. W.; El-Morshedy, M. M.

    1996-01-01

    Population development of Tylenchulus semipenetrans in dry soil was investigated in a greenhouse study. Citrus seedlings were grown in sandy soil in vertical tubes with upper and lower sections. Nematode population densities in the upper tubes were measured at 16, 23, and 37 days, post-treatment. Three treatments consisted of i) irrigating both tubes when soil water potential reached -1 5 kPa (non-drought), ii) irrigating only the bottom tube (local drought), and iii) no irrigation (uniform drought). Soil water potential in the upper tubes did not differ under local and uniform drought during the first 16 days post-treatment, when it approached - 125 kPa. Thereafter, the water potential of soil under uniform drought continued to decrease, while that under local drought stabilized at approximately -150 kPa. Treatments had no consistent effects on female T. semipenetrans counts from soil or roots. However, after 37 days, numbers of eggs, juvenile, and male nematodes per gram of root under local drought were more than 2.4-fold greater than those under non-drought or uniform drought. Numbers of juvenile and male nematodes in soil were 6.5 times higher under local drought than under non-drought after 37 days. Nematodes did not survive in soil under uniform drought. Most of the eggs recovered on each date, from roots under local and non-drought, hatched within 35 days. Sixteen days of uniform drought reduced cumulative egg hatch to 51%, and almost no eggs hatched after 23 and 37 days of uniform drought. Thus, the response of T. semipenetrans to dry soil is fundamentally different, depending on whether all or part of the rhizosphere experiences drought. These data and field observations suggest that hydraulic lift via the root xylem may prolong the activity of some nematodes and possibly other rhizosphere-inhabiting organisms in dry soil. PMID:19277154

  15. PRZM-2, A MODEL FOR PREDICTING PESTICIDE FATE IN THE CROP ROOT AND UNSATURATED SOIL ZONES: USERS MANUAL FOR RELEASE 2.0

    EPA Science Inventory

    PRZM-2 links two subordinate models--PRZM and VADOFT--in order to predict pesticide transport and transformation down through the crop root and unsaturated zones. RZM is a one-dimensional, finite difference model that accounts for pesticide fate in the crop root zone. his release...

  16. MONITORING ROOT-ZONE SOIL MOISTURE THROUGH THE ASSIMILATION OF A THERMAL REMOTE SENSING-BASED SOIL MOISTURE PROXY INTO A WATER BALANCE MODEL

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Two types of Soil Vegetation Atmosphere Transfer (SVAT) modeling approaches can be applied to monitor root-zone soil moisture in agricultural landscapes. Water and Energy Balance (WEB) SVAT modeling is based on forcing a prognostic root-zone water balance model with observed rainfall and predicted ...

  17. Roots of Contemporary Native American Activism. Commentary.

    ERIC Educational Resources Information Center

    Johnson, Troy R.

    1996-01-01

    Traces the foundations and development of Native American activism, 1950s-90s. Discusses relocation of reservation American Indians to urban areas in the 1950s without promised aid or vocational training, changing aspirations of Indian veterans and college students, lessons of the civil rights movement, occupations of Alcatraz Island and Wounded…

  18. Synchrotron X-ray microfluorescence measurement of metal distributions in Phragmites australis root system in the Yangtze River intertidal zone.

    PubMed

    Feng, Huan; Zhang, Weiguo; Qian, Yu; Liu, Wenliang; Yu, Lizhong; Yoo, Shinjae; Wang, Jun; Wang, Jia Jun; Eng, Christopher; Liu, Chang Jun; Tappero, Ryan

    2016-07-01

    This study investigates the distributions of Br, Ca, Cl, Cr, Cu, K, Fe, Mn, Pb, Ti, V and Zn in Phragmites australis root system and the function of Fe nanoparticles in scavenging metals in the root epidermis using synchrotron X-ray microfluorescence, synchrotron transmission X-ray microscope measurement and synchrotron X-ray absorption near-edge structure techniques. The purpose of this study is to understand the mobility of metals in wetland plant root systems after their uptake from rhizosphere soils. Phragmites australis samples were collected in the Yangtze River intertidal zone in July 2013. The results indicate that Fe nanoparticles are present in the root epidermis and that other metals correlate significantly with Fe, suggesting that Fe nanoparticles play an important role in metal scavenging in the epidermis. PMID:27359142

  19. Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions.

    PubMed

    Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

    2016-01-01

    The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea 'var. Chetoui') in a Tunisian grove were exposed to four treatments from May to October for three-years: 'control' plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; 'PRD100' were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; 'PRD50' were given 50% of ETc to half of the root-system, and; 'rain-fed' plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during 'off-years' may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation, which may indicate the

  20. Estimation of root zone storage capacity at the catchment scale using improved Mass Curve Technique

    NASA Astrophysics Data System (ADS)

    Zhao, Jie; Xu, Zongxue; Singh, Vijay P.

    2016-09-01

    The root zone storage capacity (Sr) greatly influences runoff generation, soil water movement, and vegetation growth and is hence an important variable for ecological and hydrological modelling. However, due to the great heterogeneity in soil texture and structure, there seems to be no effective approach to monitor or estimate Sr at the catchment scale presently. To fill the gap, in this study the Mass Curve Technique (MCT) was improved by incorporating a snowmelt module for the estimation of Sr at the catchment scale in different climatic regions. The "range of perturbation" method was also used to generate different scenarios for determining the sensitivity of the improved MCT-derived Sr to its influencing factors after the evaluation of plausibility of Sr derived from the improved MCT. Results can be showed as: (i) Sr estimates of different catchments varied greatly from ∼10 mm to ∼200 mm with the changes of climatic conditions and underlying surface characteristics. (ii) The improved MCT is a simple but powerful tool for the Sr estimation in different climatic regions of China, and incorporation of more catchments into Sr comparisons can further improve our knowledge on the variability of Sr. (iii) Variation of Sr values is an integrated consequence of variations in rainfall, snowmelt water and evapotranspiration. Sr values are most sensitive to variations in evapotranspiration of ecosystems. Besides, Sr values with a longer return period are more stable than those with a shorter return period when affected by fluctuations in its influencing factors.

  1. Root zone of the late Proterozoic Salma caldera, northeastern Arabian Shield, Kingdom of Saudi Arabia.

    USGS Publications Warehouse

    Kellogg, K.S.

    1985-01-01

    The eroded root of the late Proterozoic Salma caldera crops out in a striking, roughly elliptical feature, about 27 km long and 22 km wide, near the NE edge of the Arabian Shield, The caldera is genetically part of an elongate alkalic granitic massif (Jabal Salma) that extends 35 km from the caldera to the SW. Comenditic ash flow tuff and lava(?) of the caldera fill, probably more than 1 km thick, are the oldest recognized rocks of the caldera complex. These rocks were erupted during caldera collapse associated with the rapid evacuation of the upper, mildly peralkalic part of a zoned magma reservoir. Within the caldera fill, a massive, lithic-rich intracaldera rhyolite, probably a lava in excess of 1 km thick, is overlain by a layered ash flow sequence. Numerous megabreccia blocks, probably derived from the caldera wall, occur in the massive rhyolite. No apparent structural doming of the exposed volcanic rocks along the E side of the caldera took place; the layered ash flows commonly dip steeply toward the center of the caldera. Postemplacement deformation and metamorphism of the caldera are mimimal. Small-displacement strike-slip faults cut the complex, which is tilted to the NE by no more than about 2o.-from Author

  2. Estimating root-zone moisture and evapotranspiration with AVHRR data[Advanced Very High Resolution Radiometer

    SciTech Connect

    Song, J.; Wesely, M. L.

    1999-10-08

    The parameterized subgrid-scale surface fluxes (PASS) model uses satellite data and limited surface observations to infer root-zone available moisture content and evapotranspiration rate with moderate spatial resolution over extended terrestrial areas. The ultimate goal of this work is to produce estimates of water loss by evapotranspiration, for application in hydrological models. The major advantage to the method is that it can be applied to areas having diverse surface characteristics where direct surface flux measurements either do not exist or are not feasible and where meteorological data are available from only a limited number of ground stations. The emphasis of this work with the PASS model is on improving (1) methods of using satellite remote sensing data to derive the essential parameters for individual types of surfaces over large areas, (2) algorithms for describing the interactions of near-surface atmospheric conditions with surface processes, and (3) algorithms for computing surface energy and water vapor flux at a scale close to the size of a satellite-derived image pixel. The PASS approach is being developed and tested further with observations from the 1997 Cooperative Atmosphere-Surface Exchange Study (CASES-97) at the Atmospheric Boundary Layer Experiments (ABLE) site in the Walnut River Watershed (WRW), an area of about 5,000 km{sup 2} in southern Kansas. Here the authors describe some of the progress made since the previous report.

  3. Optodynamic Phenomena During Laser-Activated Irrigation Within Root Canals

    NASA Astrophysics Data System (ADS)

    Lukač, Nejc; Gregorčič, Peter; Jezeršek, Matija

    2016-07-01

    Laser-activated irrigation is a powerful endodontic treatment for smear layer, bacteria, and debris removal from the root canal. In this study, we use shadow photography and the laser-beam-transmission probe to examine the dynamics of laser-induced vapor bubbles inside a root canal model and compare ultrasonic needle irrigation to the laser method. Results confirm important phenomenological differences in the two endodontic methods with the laser method resulting in much deeper irrigation. Observations of simulated debris particles show liquid vorticity effects which in our opinion represents the major cleaning mechanism.

  4. High temperature effect on microflora of radish root-inhabited zone and nutrient solutions for radish growth

    NASA Astrophysics Data System (ADS)

    Borodina, E. V.; Tirranen, L. S.

    The effect of high temperatures (35 and 45 °C) on microflora of the root zone of radish plants grown in phytotron was evaluated by the response of microorganisms from 9 indicator groups. Phytotron air temperature elevated to 35 °C for 20 hours caused no significant changes in qualitative and quantitative composition of the root microflora in experimental plants. By the end of the experiment, the species diversity of microflora had changed. The amount of phytopathogenic microorganisms decreased which can be interpreted as more stable co-existence of microflora with plants. The numbers of microbes from other indicator groups was in dynamic equilibrium. The plants' condition did not deteriorate either. Exposure to the temperature of 45 °C for 7 hours have been found to change the numbers and species diversity in the radish root zone microflora. The microorganisms were observed to increase their total numbers at the expense of certain indicator groups. Bacteria increased spore forms at the stage of spores. Colon bacillus bacteria of increased their numbers by the end of experiment by an order. By the end of experiment the roots of experiment plants had microscopic fungi from Mucor, Aspergillus, Trichoderma, Cladosporium genera. The observed changes in the microbial complex seem to be associated with the changes of root emissions and general deterioration of the plants' condition. It is suggested that the response of the microorganisms can be indicative of the condition of plants under investigation.

  5. Monoterpene derivatives with anti-allergic activity from red peony root, the root of Paeonia lactiflora.

    PubMed

    Shi, Yan-Hong; Zhu, Shu; Ge, Yue-Wei; He, Yu-Min; Kazuma, Kohei; Wang, Zhengtao; Yoshimatsu, Kayo; Komatsu, Katsuko

    2016-01-01

    The methanolic extract and its subfractions from red peony root, the dried roots of Paeonia lactiflora Pallas showed potent antiallergic effects, as inhibition of immunoglobulin E (IgE)-mediated degranulation in rat basophil leukemia (RBL)-2H3 cells. Bioassay-guided fractionation led to the isolation of 16 monoterpene derivatives, including 3 new compounds, paeoniflorol (1), 4'-hydroxypaeoniflorigenone (2) and 4-epi-albiflorin (3), together with 13 known ones (4-16). The chemical structures of the new compounds were elucidated on the basis of spectroscopic and chemical evidences. Among the isolated monoterpene derivatives, nine compounds showed potent anti-allergic effects and compound 1 was the most effective. A primary structure-activity relationship of monoterpene derivatives was discussed. PMID:26598138

  6. Compounds with Antifouling Activities from the Roots of Notopterygium franchetii.

    PubMed

    Yu, Chun; Cheng, Liqing; Zhang, Zhongling; Zhang, Yu; Yuan, Chunmao; Liu, Weiwei; Hao, Xiaojiang; Ma, Weiguang; He, Hongping

    2015-12-01

    In antifouling screening, the extract of Notopterygium franchetii de Boiss showed obvious activity. Two new phenylpropanoids (1-2) and five known coumarins (3-7) were isolated from the methanol extract of the roots of this species. The structures of the isolated compounds were determined on the basis of spectroscopic analysis. Compounds 1-2 showed definite antifouling activity against larval settlement of Bugula neritina. PMID:26882679

  7. Root hairs play a key role in the endophytic colonization of olive roots by Pseudomonas spp. with biocontrol activity.

    PubMed

    Prieto, Pilar; Schilirò, Elisabetta; Maldonado-González, María Mercedes; Valderrama, Raquel; Barroso-Albarracín, Juan Bautista; Mercado-Blanco, Jesús

    2011-08-01

    The use of indigenous bacterial root endophytes with biocontrol activity against soil-borne phytopathogens is an environmentally-friendly and ecologically-efficient action within an integrated disease management framework. The earliest steps of olive root colonization by Pseudomonas fluorescens PICF7 and Pseudomonas putida PICP2, effective biocontrol agents (BCAs) against Verticillium wilt of olive (Olea europaea L.) caused by the fungus Verticillium dahliae Kleb., are here described. A gnotobiotic study system using in vitro propagated olive plants, differential fluorescent-protein tagging of bacteria, and confocal laser scanning microscopy analysis have been successfully used to examine olive roots-Pseudomonas spp. interactions at the single-cell level. In vivo simultaneous visualization of PICF7 and PICP2 cells on/in root tissues enabled to discard competition between the two bacterial strains during root colonization. Results demonstrated that both BCAs are able to endophytically colonized olive root tissues. Moreover, results suggest a pivotal role of root hairs in root colonization by both biocontrol Pseudomonas spp. However, colonization of root hairs appeared to be a highly specific event, and only a very low number of root hairs were effectively colonized by introduced bacteria. Strains PICF7 and PICP2 can simultaneously colonize the same root hair, demonstrating that early colonization of a given root hair by one strain did not hinder subsequent attachment and penetration by the other. Since many environmental factors can affect the number, anatomy, development, and physiology of root hairs, colonization competence and biocontrol effectiveness of BCAs may be greatly influenced by root hair's fitness. Finally, the in vitro study system here reported has shown to be a suitable tool to investigate colonization processes of woody plant roots by microorganisms with biocontrol potential. PMID:21347721

  8. Molecular Mechanism of Active Zone Organization at Vertebrate Neuromuscular Junctions

    PubMed Central

    Nishimune, Hiroshi

    2013-01-01

    Organization of presynaptic active zones is essential for development, plasticity, and pathology of the nervous system. Recent studies indicate a trans-synaptic molecular mechanism that organizes the active zones by connecting the pre- and the postsynaptic specialization. The presynaptic component of this trans-synaptic mechanism is comprised of cytosolic active zone proteins bound to the cytosolic domains of voltage-dependent calcium channels (P/Q-, N-, and L-type) on the presynaptic membrane. The postsynaptic component of this mechanism is the synapse organizer (laminin β2) that is expressed by the postsynaptic cell and accumulates specifically on top of the postsynaptic specialization. The pre- and the postsynaptic components interact directly between the extracellular domains of calcium channels and laminin β2 to anchor the presynaptic protein complex in front of the postsynaptic specialization. Hence, the presynaptic calcium channel functions as a scaffolding protein for active zone organization and as an ion-conducting channel for synaptic transmission. In contrast to the requirement of calcium influx for synaptic transmission, the formation of the active zone does not require the calcium influx through the calcium channels. Importantly, the active zones of adult synapses are not stable structures and require maintenance for their integrity. Furthermore, aging or diseases of the central and peripheral nervous system impair the active zones. This review will focus on the molecular mechanisms that organize the presynaptic active zones and summarize recent findings at the neuromuscular junctions and other synapses. PMID:22135013

  9. Spatial regression between soil surface elevation, water storage in root zone and biomass productivity of alfalfa within an irrigated field

    NASA Astrophysics Data System (ADS)

    Zeyliger, Anatoly; Ermolaeva, Olga

    2014-05-01

    Efficiency of water use for the irrigation purposes is connected to the variety of circumstances, factors and processes appearing along the transportation path of water from its sources to the root zone of the plant. Water efficiency of agricultural irrigation is connected with variety of circumstances, the impacts and the processes occurring during the transportation of water from water sources to plant root zone. Agrohydrological processes occur directly at the irrigated field, these processes linked to the infiltration of the applied water subsequent redistribution of the infiltrated water within the root zone. One of them are agrohydrological processes occurring directly on an irrigated field, connected with infiltration of water applied for irrigation to the soil, and the subsequent redistribution of infiltrated water in the root zone. These processes have the strongly pronounced spatial character depending on the one hand from a spatial variation of some hydrological characteristics of soils, and from other hand with distribution of volume of irrigation water on a surface of the area of an irrigated field closely linked with irrigation technology used. The combination of water application parameters with agrohydrological characteristics of soils and agricultural vegetation in each point at the surface of an irrigated field leads to formation of a vector field of intensity of irrigation water. In an ideal situation, such velocity field on a soil surface should represent uniform set of vertically directed collinear vectors. Thus values of these vectors should be equal to infiltration intensities of water inflows on a soil surface. In soil profile the field of formed intensities of a water flow should lead to formation in it of a water storage accessible to root system of irrigated crops. In practice this ideal scheme undergoes a lot of changes. These changes have the different nature, the reasons of occurrence and degree of influence on the processes connected

  10. Simulation of carbonfuran and hexazinone movement into groundwater in central Florida using PRZM (Pesticide) Root Zone Model)

    SciTech Connect

    Neary, D.G.; Bush, P.B.; Smith, C.S.; Carsel, R.F.; Phillips, M.J.

    1985-01-01

    PRZM (Pesticide Root Zone Model) was developed to predict movement of pesticides within the plant root zone of soils and below to a depth of 7 m. The model, developed for surface-applied or soil incorporated pesticides, consists of 1) a hydrology component for calculating removal of precipitation by runoff, evapotranspiration, and crop interception, and 2) a chemical transport component for calculating uptake by plants, volatolization, decay, leaching, dispersion, concentration in runoff, retardation, soil solution and solid phase concentrations. Simulations were run for carbofuran, a moderately soluble, highly toxic carbamate insecticide, and hexazinone, a highly soluble, low toxicity triazine herbicide. Simulations and validation field experiments were done on forest sites with deep Typic Quartzipsamment soils overlying the Floridan Aquifer in Central Florida. Implications on use of predicting groundwater contamination and the risks of pesticide use are discussed.

  11. Conditional dependence of evaporative fraction on surface and root-zone soil moisture and its application to soil moisture retrieval

    NASA Astrophysics Data System (ADS)

    Ryu, D.; Akuraju, V.

    2013-12-01

    Thermal infrared (TIR) or evapotranspiration (ET) estimates from space have been gaining growing attention as an input to retrieve root-zone soil moisture. The rationale behind the approach is that i) there exists a strong causal link between the evapotranspiration and the vegetation canopy temperature and ii) under water-limited conditions soil water available for transpiration controls the evaporative fraction (EF) or the actual evapotranspiration (AET) to potential evapotranspiration (PET) ratio of vegetated surfaces. In this work, we examine the relationship between EF and surface to root-zone soil moisture content collected from two study sites (wheat and pasture fields) at the Dookie research farm site in Victoria, Australia. EF estimated from the eddy covariance system is compared with soil moisture content under various ranges of soil depths (5 depths from surface to 120 cm), net radiation, soil wetness and biomass. In both wheat and pasture fields, EF is highly correlated with surface (0-8 cm) soil moisture when the soil surface is bare-to-lightly vegetated, but the correlation decreases as vegetation grows or as the net radiation decreases. On the other hand, EF shows strong correlation with root-zone soil moisture during the growing seasons of the fields. Under similar ranges of soil moisture and net radiation, EF can have different ranges depending on the vegetation height and density. These results indicate the importance of biophysical parameters and processes in estimating surface and root-zone soil moisture contents using surface energy flux. We propose an exponential and a spherical model to fit EF versus soil moisture and show how their uncertainty changes with biophysical parameters.

  12. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

    USGS Publications Warehouse

    Bachand, P.A.M.; S. Bachand; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

    2014-01-01

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal

  13. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone.

    PubMed

    Bachand, P A M; Bachand, S; Fleck, J; Anderson, F; Windham-Myers, L

    2014-06-15

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flow rates and tracer concentrations at wetland inflows and outflows. We used two ideal reactor model solutions, a continuous flow stirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these non-ideal agricultural wetlands in which check ponds are in series. Using a flux model, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment-water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemical mechanisms affecting dissolved constituent cycling in the root zone. In addition, our understanding of

  14. Mapping Seasonal Evapotranspiration and Root Zone Soil Moisture using a Hybrid Modeling Approach over Vineyards

    NASA Astrophysics Data System (ADS)

    Geli, H. M. E.

    2015-12-01

    Estimates of actual crop evapotranspiration (ETa) at field scale over the growing season are required for improving agricultural water management, particularly in water limited and drought prone regions. Remote sensing data from multiple platforms such as airborne and Landsat-based sensors can be used to provide these estimates. Combining these data with surface energy balance models can provide ETa estimates at sub- field scale as well as information on vegetation stress and soil moisture conditions. However, the temporal resolution of airborne and Landsat data does not allow for a continuous ETa monitoring over the course of the growing season. This study presents the application of a hybrid ETa modeling approach developed for monitoring daily ETa and root zone available water at high spatial resolutions. The hybrid ETa modeling approach couples a thermal-based energy balance model with a water balance-based scheme using data assimilation. The two source energy balance (TSEB) model is used to estimate instantaneous ETa which can be extrapolated to daily ETa using a water balance model modified to use the reflectance-based basal crop coefficient for interpolating ETa in between airborne and/or Landsat overpass dates. Moreover, since it is a water balance model, the soil moisture profile is also estimated. The hybrid ETa approach is applied over vineyard fields in central California. High resolution airborne and Landsat imagery were used to drive the hybrid model. These images were collected during periods that represented different vine phonological stages in 2013 growing season. Estimates of daily ETa and surface energy balance fluxes will be compared with ground-based eddy covariance tower measurements. Estimates of soil moisture at multiple depths will be compared with measurements.

  15. Long-term tillage and crop rotation effects on residual nitrate in the crop root zone and nitrate accumulation in the intermediate vadose zone

    USGS Publications Warehouse

    Katupitiya, A.; Eisenhauer, D.E.; Ferguson, R.B.; Spalding, R.F.; Roeth, F.W.; Bobier, M.W.

    1997-01-01

    Tillage influences the physical and biological environment of soil. Rotation of crops with a legume affects the soil N status. A furrow irrigated site was investigated for long-term tillage and crop rotation effects on leaching of nitrate from the root zone and accumulation in the intermediate vadose zone (IVZ). The investigated tillage systems were disk-plant (DP), ridge-till (RT) and slot-plant (SP). These tillage treatments have been maintained on the Hastings silt loam (Udic Argiustoll) and Crete silt loam (Pachic Argiustoll) soils since 1976. Continuous corn (CC) and corn soybean (CS) rotations were the subtreatments. Since 1984, soybeans have been grown in CS plots in even calendar years. All tillage treatments received the same N rate. The N rate varied annually depending on the root zone residual N. Soybeans were not fertilized with N-fertilizer. Samples for residual nitrate in the root zone were taken in 8 of the 15 year study while the IVZ was only sampled at the end of the study. In seven of eight years, root zone residual soil nitrate-N levels were greater with DP than RT and SP. Residual nitrate-N amounts were similar in RT and SP in all years. Despite high residual nitrate-N with DP and the same N application rate, crop yields were higher in RT and SP except when DP had an extremely high root zone nitrate level. By applying the same N rates on all tillage treatments, DP may have been fertilized in excess of crop need. Higher residual nitrate-N in DP was most likely due to a combination of increased mineralization with tillage and lower yield compared to RT and SP. Because of higher nitrate availability with DP, the potential for nitrate leaching from the root zone was greater with DP as compared to the RT and SP tillage systems. Spring residual nitrate-N contents of DP were larger than RT and SP in both crop rotations. Ridge till and SP systems had greater nitrate-N with CS than CC rotations. Nitrate accumulation in IVZ at the upstream end of the

  16. Tomato growth as affected by root-zone temperature and the addition of gibberellic acid and kinetin to nutrient solutions

    NASA Technical Reports Server (NTRS)

    Bugbee, B.; White, J. W.; Salisbury, F. B. (Principal Investigator)

    1984-01-01

    The effect of root-zone temperature on young tomato plants (Lycopersicon esculentum Mill. cv. Heinz 1350) was evaluated in controlled environments using a recirculating solution culture system. Growth rates were measured at root-zone temperatures of 15 degrees, 20 degrees, 25 degrees, and 30 degrees C in a near optimum foliar environment. Optimum growth occurred at 25 degrees to 30 degrees during the first 4 weeks of growth and 20 degrees to 25 degrees during the 5th and 6th weeks. Growth was severely restricted at 15 degrees. Four concentrations of gibberellic acid (GA3) and kinetin were added to the nutrient solution in a separate trial; root-zone temperature was maintained at 15 degrees and 25 degrees. Addition of 15 micromoles GA3 to solutions increased specific leaf area, total leaf area, and dry weight production of plants in both temperature treatments. GA3-induced growth stimulation was greater at 15 degrees than at 25 degrees. GA3 may promote growth by increasing leaf area, enhancing photosynthesis per unit leaf area, or both. Kinetic was not useful in promoting growth at either temperature.

  17. Activated carbon from vetiver roots: gas and liquid adsorption studies.

    PubMed

    Gaspard, S; Altenor, S; Dawson, E A; Barnes, P A; Ouensanga, A

    2007-06-01

    Large quantities of lignocellulosic residues result from the industrial production of essential oil from vetiver grass (Vetiveria zizanioides) roots. These residues could be used for the production of activated carbon. The yield of char obtained after vetiver roots pyrolysis follows an equation recently developed [A. Ouensanga, L. Largitte, M.A. Arsene, The dependence of char yield on the amounts of components in precursors for pyrolysed tropical fruit stones and seeds, Micropor. Mesopor. Mater. 59 (2003) 85-91]. The N(2) adsorption isotherm follows either the Freundlich law K(F)P(alpha) which is the small alpha equation limit of a Weibull shaped isotherm or the classical BET isotherm. The surface area of the activated carbons are determined using the BET method. The K(F) value is proportional to the BET surface area. The alpha value increases slightly when the burn-off increases and also when there is a clear increase in the micropore distribution width. PMID:17092643

  18. Antimicrobial activity of extracts of Terminalia catappa root.

    PubMed

    Pawar, S P; Pal, S C

    2002-06-01

    The effect against bacteria of petroleum ether (60-80 degrees C), chloroform and methanolic extract of dried root of Terminalia catappa Linn. (combrataceae) was employed by cup plate agar diffusion method. The chloroform extract showed prominent antimicrobial activity against S. aureus and E. coli as compared to other tested microorganisms, while petroleum ether extract was devoid of antimicrobial activity. The methanolic: extract exhibited MIC of 0.065 mg/ml against E. coli. and chloroform extract exhibited MIC of 0.4 mg/ml against S. aureus The chloroform has well as methanolic extracts showed good antimicrobial activity against Gram positive and Gram negative microorganisms. PMID:12649950

  19. [Antidepressant active constituents in the roots of Morinda officinalis How].

    PubMed

    Cui, C; Yang, M; Yao, Z; Cao, B; Luo, Z; Xu, Y; Chen, Y

    1995-01-01

    Five compounds having antidepressant activities have been isolated from the roots of Morinda officinalis, a Chinese traditional Yang-tonic drug. These compounds were identified as succinic acid (1), nystose (2), 1F-fructofuranosylnystose (3), inulin-type hexasaccharide (4) and heptasaccharide (5) by chemical and spectroscopic methods. All of the compounds are isolated from the species of genus Morinda for the first time. PMID:7626209

  20. Spatial trends of potential denitrification below the root zone in an agricultural setting, San Joaquin Valley, California, USA

    NASA Astrophysics Data System (ADS)

    Green, C. T.; Duff, J. H.; Bekins, B. A.

    2004-05-01

    Contamination of groundwater by nitrate is a major problem worldwide. Under anaerobic conditions in the subsurface, reduction of nitrate to nitrogen gas via denitrification may mitigate the problem. Denitrification has been studied extensively in the shallow subsurface, but few studies have been done to examine the potential for denitrification below the root zone. In this study, we examined spatial trends in potential denitrification rates in the sub-root unsaturated and saturated zones. Sediment samples were collected from bore holes located in the San Joaquin Valley near Merced, California. Samples were analyzed for potential denitrification rates using acetylene block enzyme assays. Maximum denitrification rates, microbial growth, and lag coefficients were calculated by calibrating a numerical model of microbial growth and substrate consumption to the experimental data. The rate coefficients were compared to hydrologic regime, depth, grain size, and organic carbon content of the sediment samples. Preliminary results show complex spatial trends in potential denitrification rates. In samples taken from near the water table and near the ground surface, rates were comparable. In the unsaturated zone and deep saturated zone, rates were orders of magnitude lower. Variability between sites and hydrologic regimes could be explained in part by abundance of organic carbon. We speculate that limitations on microbial growth and transport by sediment properties and hydrologic regime also control the ability of subsurface microbial communities to carry out denitrification.

  1. Specific features of the recent accumulation of 137Cs in tree roots of forest ecosystems within the zone of radioactive contamination

    NASA Astrophysics Data System (ADS)

    Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey; Popova, Evgenia

    2015-04-01

    Despite numerous studies of the accumulation of technogenic radionuclides in the root systems, no clear regularities of this process have been established. The tendencies found in the works of Russian and foreign researchers are rather discrepant. Some authors argue that the accumulation of radionuclides in the roots is more pronounced than that in the aboveground parts of the plants (Skovorodnikova, 2005; Romantseva, 2012; Sennerby et al., 1994; Mamikhin, 2002; Fircks et al., 2002}. Other works attest to a higher accumulation of radionuclides in the aboveground pars (Juznic et al., 1990; Chibowski, 2000; Zhianski et al., 2005), which is also typical of the stable isotopes of these elements, including 133Cs (Dong Jin Kang, YongJin Seo, Tsukasa Saito et al,2012). It is also stated that the accumulation of radionuclides in the aboveground and underground parts of plants may differ in dependence on the soil-ecological conditions and other factors (Kozhakhanov et al., 2011; Grabovskyi et al., 2013). The aim of our study was to evaluate the accumulation of 137Cs in the root systems of arboreal plants in forest ecosystems within the near zone of the Chernobyl fallout on the plots with similar soil and phytocenotic features. Pine and birch stands were studied within the 30-km-wide exclusion zone of the Chernobyl Nuclear Power Station in Ukraine in 1992-1993, when the density of the radioactive contamination of the upper (0-20 cm) layer with 137Cs reached 2153.8 kBq/m2), and in Bryansk oblast of Russia in 2013-2014, when the density of contamination varied from 1458.4 kBq/m2 (pine stand) to 2578.3 kBq/m2 (birch stand). The tree layer in these ecosystems was dominated by Pinus sylvestris (L.) and Betula pendula (Roth.), respectively. Quercus robur (L.), Picea abies (L.), and Sorbus aucuparia (L.) were also present. The specific activity of 137Cs was measured in the samples from the aboveground parts of model trees and their roots differentiated by size (0-3, 3-10, 10

  2. Plant roots can actively regulate hydraulic redistribution by modifying the hydraulic properties of the rhizosphere using exudates

    NASA Astrophysics Data System (ADS)

    Ghezzehei, Teamrat; Bogie, Nathaniel; Albalasmeh, Ammar

    2015-04-01

    The phenomenon of hydraulic lift by roots of plants has been observed in many arid and semi-arid regions. The process involves water transfer from moist deep soil zone to shallow and dry layers, typically at night when transpiration is shut off. The widely held explanation is that hydraulic lift receives the strong water potential gradient created during the day when the plants are actively transpiring. However, it is not fully understood whether hydraulic lift is actively controlled by plants or it is a spontaneous response to the occurrence of pressure gradient. Here, we will present modeling study that demonstrates that plant roots can exert significant control on hydraulic redistribution via exudation and formation of rhizospheath. The model is based on results of potted experiments conducted by Nambiar in 1976 (Plant and Soil, 44:267-271), which have shown that plants are able to acquire essential micronutrients from very dry soil so long as water is available to the root system in sufficient quantity elsewhere. He also observed that the roots in the water-depleted zones exhibited evidence of substantial root exudation, which suggests that exudates are needed in order to provide moisture for mobilization and diffusion of nutrients in the dry regions. In addition, our own recent model-based research demonstrated that exudates play important role in facilitating water flow in otherwise dry rhizosphere region. Our models show that exudates facilitate the release of hydraulically lifted water to the rhizosphere by ensuring hydraulic continuity between the root walls and the surrounding dry soil. In addition, the high water retention capacity of root exudates permits the hydraulic conductivity to remain elevated even at low potential conditions. The results of this modeling study suggest that hydraulic lift is an actively controlled adaptation mechanism that allows plants to remain active during long dry spells by acquiring nutrients from the dry near surface soils

  3. Evidence for a crustal root beneath Khondalite zone in the northern edge of Ordos block, North China

    NASA Astrophysics Data System (ADS)

    Wang, C.; Lou, H.; Sandvol, E. A.; Yao, Z.; Luo, X.

    2013-12-01

    Crustal thicknesses and Vp/Vs ratios were estimated at 150 broadband seismic stations in the northern Ordos block and its vicinity by use of receiver function H-k stacking method. The average crustal thickness is 41.2 km, and the Poisson's ratio is 0.26, implying the crust with felsic composition. A 5-km thick root of thickened crust occurs along a nearly EW-trending belt between the northern Ordos block and Yinshan orogen, which extends from the Yinchuan-Hetao graben in the west to the Hu-Bao graben in the east. The variation of crustal thickness across the northern edge of Ordos block is consistent with the results from a deep seismic sounding profile (Teng et al., 2010). The location of thickened crust basically coincides with the Khondalite zone related to the 2.0-1.9 Ga Paleoproterozoic collision (Zhao et al., 2005), suggesting crustal thickening is formed in the collision of tectonic setting. Despite being subsequent crustal deformation, especially the NW-SE regional extension in the North China Craton since the Eocene, the formation of Yinchuan-Hetao graben was caused by thermal erosion and thinning of lithosphere, but the thickened crust remains. Following the approach of Sheehan et al. (1995), the density contrast between the crustal root and surrounding mantle is estimated to be 110 kg/m3. Moreover, the ratio of surface elevation to crustal root thickness is lower (0.02). These are consistent with global trends, in which the ratio of surface elevation to root thickness and the buoyancy of the crustal root are lower in older, inactive orogens (Fischer, 2002). The Yinchuan-Hetao graben has high crustal Poisson's ratio (0.28). The higher Poisson's ratios and the thickened crust are thought to be due to the lower crust with more mafic composition. The low density contrast between the crustal root and mantle may be caused by increased density of crustal root due to metamorphic reaction.

  4. Improving root-zone soil properties for Trembling Aspen in a reconstructed mine-site soil

    NASA Astrophysics Data System (ADS)

    Dyck, M. F.; Sabbagh, P.; Bockstette, S.; Landhäusser, S.; Pinno, B.

    2014-12-01

    Surface mining activities have significantly depleted natural tree cover, especially trembling aspen (Populus tremuloides), in the Boreal Forest and Aspen Parkland Natural Regions of Alberta. The natural soil profile is usually destroyed during these mining activities and soil and landscape reconstruction is typically the first step in the reclamation process. However, the mine tailings and overburden materials used for these new soils often become compacted during the reconstruction process because they are subjected to high amounts of traffic with heavy equipment. Compacted soils generally have low porosity and low penetrability through increased soil strength, making it difficult for roots to elongate and explore the soil. Compaction also reduces infiltration capacity and drainage, which can cause excessive runoff and soil erosion. To improve the pore size distribution and water transmission, subsoil ripping was carried out in a test plot at Genesee Prairie Mine, Alberta. Within the site, six replicates with two treatments each, unripped (compacted) and ripped (decompacted), were established with 20-m buffers between them. The main objective of this research was to characterize the effects of subsoil ripping on soil physical properties and the longevity of those effects.as well as soil water dynamics during spring snowmelt. Results showed improved bulk density, pore size distribution and water infiltration in the soil as a result of the deep ripping, but these improvements appear to be temporary.

  5. GLEAM v3: updated land evaporation and root-zone soil moisture datasets

    NASA Astrophysics Data System (ADS)

    Martens, Brecht; Miralles, Diego; Lievens, Hans; van der Schalie, Robin; de Jeu, Richard; Fernández-Prieto, Diego; Verhoest, Niko

    2016-04-01

    Evaporation determines the availability of surface water resources and the requirements for irrigation. In addition, through its impacts on the water, carbon and energy budgets, evaporation influences the occurrence of rainfall and the dynamics of air temperature. Therefore, reliable estimates of this flux at regional to global scales are of major importance for water management and meteorological forecasting of extreme events. However, the global-scale magnitude and variability of the flux, and the sensitivity of the underlying physical process to changes in environmental factors, are still poorly understood due to the limited global coverage of in situ measurements. Remote sensing techniques can help to overcome the lack of ground data. However, evaporation is not directly observable from satellite systems. As a result, recent efforts have focussed on combining the observable drivers of evaporation within process-based models. The Global Land Evaporation Amsterdam Model (GLEAM, www.gleam.eu) estimates terrestrial evaporation based on daily satellite observations of meteorological drivers of terrestrial evaporation, vegetation characteristics and soil moisture. Since the publication of the first version of the model in 2011, GLEAM has been widely applied for the study of trends in the water cycle, interactions between land and atmosphere and hydrometeorological extreme events. A third version of the GLEAM global datasets will be available from the beginning of 2016 and will be distributed using www.gleam.eu as gateway. The updated datasets include separate estimates for the different components of the evaporative flux (i.e. transpiration, bare-soil evaporation, interception loss, open-water evaporation and snow sublimation), as well as variables like the evaporative stress, potential evaporation, root-zone soil moisture and surface soil moisture. A new dataset using SMOS-based input data of surface soil moisture and vegetation optical depth will also be

  6. Lessons Learned From Large-Scale Evapotranspiration and Root Zone Soil Moisture Mapping Using Ground Measurements (meteorological, LAS, EC) and Remote Sensing (METRIC)

    NASA Astrophysics Data System (ADS)

    Hendrickx, J. M. H.; Allen, R. G.; Myint, S. W.; Ogden, F. L.

    2015-12-01

    Large scale mapping of evapotranspiration and root zone soil moisture is only possible when satellite images are used. The spatial resolution of this imagery typically depends on its temporal resolution or the satellite overpass time. For example, the Landsat satellite acquires images at 30 m resolution every 16 days while the MODIS satellite acquires images at 250 m resolution every day. In this study we deal with optical/thermal imagery that is impacted by cloudiness contrary to radar imagery that penetrates through clouds. Due to cloudiness, the temporal resolution of Landsat drops from 16 days to about one clear sky Landsat image per month in the southwestern USA and about one every ten years in the humid tropics of Panama. Only by launching additional satellites can the temporal resolution be improved. Since this is too costly, an alternative is found by using ground measurements with high temporal resolution (from minutes to days) but poor spatial resolution. The challenge for large-scale evapotranspiration and root zone soil moisture mapping is to construct a layer stack consisting of N time layers covering the period of interest each containing M pixels covering the region of interest. We will present examples of the Phoenix Active Management Area in AZ (14,600 km2), Green River Basin in WY (44,000 km2), the Kishwaukee Watershed in IL (3,150 km2), the area covered by Landsat Path 28/Row 35 in OK (30,000 km2) and the Agua Salud Watershed in Panama (200 km2). In these regions we used Landsat or MODIS imagery for mapping evapotranspiration and root zone soil moisture by the algorithm Mapping EvapoTranspiration at high Resolution with Internalized Calibration (METRIC) together with meteorological measurements and sometimes either Large Aperture Scintillometers (LAS) or Eddy Covariance (EC). We conclude with lessons learned for future large-scale hydrological studies.

  7. Xyloglucan endotransglucosylase action is high in the root elongation zone and in the trichoblasts of all vascular plants from Selaginella to Zea mays.

    PubMed

    Vissenberg, K; Van Sandt, V; Fry, S C; Verbelen, J-P

    2003-01-01

    The endotransglucosylase action of the enzyme xyloglucan endotransglucosylase/hydrolase (XTH) was localized in the roots of diverse vascular plants: club-mosses (lycopodiophytes), ferns, gymnosperms, monocots, and dicots. High action was always found in the epidermis cell wall of the elongation zone and in trichoblasts in the differentiation zone. Clearly XTH and its action in root development evolved before the evolutionary divergence of ferns and seed plants and also of the lycopodiophytes and euphyllophytes. PMID:12493861

  8. Responses of Leaf-level Carbon Assimilation and Transpiration to Root-zone Water Potential Changes in a Subtropical Tree Species

    NASA Astrophysics Data System (ADS)

    Cicheng, Z.; Guan, H.; Han, G.; Zhang, X.

    2013-12-01

    Photosynthetic carbon assimilation in terrestrial ecosystems significantly contributes to global carbon balance in the atmosphere. While vegetation photosynthesizes to fix CO2, it simultaneously transpires H2O. These two interdependent processes are regulated by leaf stomata which are sensitive to environmental conditions (such as root zone soil moisture). Knowledge of the responses of leaf-level transpiration and carbon assimilation to a change of root-zone soil moisture condition is important to understand how these processes influence water balance and carbon sequestration in terrestrial ecosystems, and to understand the capacity of trees to cope with future climate changes.We will present the results of a one-year observational study on a subtropical evergreen broadleaf tree species (Osmanthus fragrans) in the central south China. The observations were carried out on two 8-year Osmanthus fragrans trees in a plantation site from 1 Sep, 2012 to 31 Aug, 2013. A portable infrared gas exchange analyzer (Li-6400, Li-COR, Inc., Lincoln, Nebraska, USA) was used to measure leaf photosynthesis and leaf transpiration on clear days. Root zone soil water potential was estimated from predawn stem water potential using stem psychrometers (ICT, Australia). Sap flow and micrometeorological data were also collected. The results show that the average leaf carbon assimilation rate at light saturation decreases quickly with the root zone water potential from 0 to -1 MPa, and slowly after the root zone water potential falls below -1 MPa. The average leaf transpiration at light saturation shows a similar pattern. Leaf-level water use efficiency increases slowly with a decrease of root-zone water potential from 0 to -1 MPa, and keeps constant when the root zone gets drier. This relationship provides a potential to estimate whole-tree carbon assimilation from sap flow measurements. Leaf assimilation rates at light saturation in early morning vs. root-zone water potential for Osmanthus

  9. Investigation on antimicrobial activity of root extracts of Thespesia populnea Linn.

    PubMed

    Senthil-Rajan, D; Rajkumar, M; Srinivasan, R; Kumarappan, C; Arunkumar, K; Senthilkumar, K L; Srikanth, M V

    2013-12-01

    Many medicinal plants have been used for centuries in daily life to treat microbial diseases all over the world. In this study, the in vitro antibacterial activity of aqueous and ethanol root extracts of Thespesia populnea Linn were investigated. Antimicrobial properties of T. populnea Linn was evaluated against five pathogenic bacteria and two fungi. Disc diffusion method and minimum inhibitory concentration (MIC) were determined by broth serial dilution method. The ciprofloxacin (5 μg/ml) and flucanozole (100 units/disc) were used as positive controls for bacteria and fungi respectively. Different concentrations (50, 100, 150 μg/ml) of ethanolic and aqueous root extracts of T. populnea were checked for the dose dependent antibacterial activity. Thespesia populnea showed broad spectrum antimicrobial activity against gram positive and gram negative bacteria and maximum inhibition by ethanolic extract was observed at higher dose (250 μg/ml) as 27±0.2mm. The MIC of the ethanol extract was 10 μg/ml for Staphylococcus aureus and 750 μg/ml for Candida albicans. The antifungal activity offered against S. aureus by the ethanolic extract is more than the aqueous extract. The results concluded that the anti-microbial activity of T. populnea was dose dependent. As the concentration increased the inhibition zone also increased. Flavonoids and tannins present in the extracts may be responsible for the antimicrobial activity. PMID:24522124

  10. Partial Root-Zone Drying of Olive (Olea europaea var. 'Chetoui') Induces Reduced Yield under Field Conditions

    PubMed Central

    Dbara, Soumaya; Haworth, Matthew; Emiliani, Giovani; Ben Mimoun, Mehdi; Gómez-Cadenas, Aurelio; Centritto, Mauro

    2016-01-01

    The productivity of olive trees in arid and semi-arid environments is closely linked to irrigation. It is necessary to improve the efficiency of irrigation techniques to optimise the amount of olive fruit produced in relation to the volume of water used. Partial root-zone drying (PRD) is a water saving irrigation technique that theoretically allows the production of a root-to-shoot signal that modifies the physiology of the above-ground parts of the plant; specifically reducing stomatal conductance (gs) and improving water use efficiency (WUE). Partial root-zone drying has been successfully applied under field conditions to woody and non-woody crops; yet the few previous trials with olive trees have produced contrasting results. Thirty year-old olive trees (Olea europaea ‘var. Chetoui’) in a Tunisian grove were exposed to four treatments from May to October for three-years: ‘control’ plants received 100% of the potential evapotranspirative demand (ETc) applied to the whole root-zone; ‘PRD100’ were supplied with an identical volume of water to the control plants alternated between halves of the root-zone every ten-days; ‘PRD50’ were given 50% of ETc to half of the root-system, and; ‘rain-fed’ plants received no supplementary irrigation. Allowing part of the root-zone to dry resulted in reduced vegetative growth and lower yield: PRD100 decreased yield by ~47% during productive years. During the less productive years of the alternate bearing cycle, irrigation had no effect on yield; this suggests that withholding of water during ‘off-years’ may enhance the effectiveness of irrigation over a two-year cycle. The amount and quality of oil within the olive fruit was unaffected by the irrigation treatment. Photosynthesis declined in the PRD50 and rain-fed trees due to greater diffusive limitations and reduced biochemical uptake of CO2. Stomatal conductance and the foliar concentration of abscisic acid (ABA) were not altered by PRD100 irrigation

  11. Salt stress response triggers activation of the jasmonate signaling pathway leading to inhibition of cell elongation in Arabidopsis primary root.

    PubMed

    Valenzuela, Camilo E; Acevedo-Acevedo, Orlando; Miranda, Giovanna S; Vergara-Barros, Pablo; Holuigue, Loreto; Figueroa, Carlos R; Figueroa, Pablo M

    2016-07-01

    Salinity is a severe abiotic stress that affects irrigated croplands. Jasmonate (JA) is an essential hormone involved in plant defense against herbivory and in responses to abiotic stress. However, the relationship between the salt stress response and the JA pathway in Arabidopsis thaliana is not well understood at molecular and cellular levels. In this work we investigated the activation of JA signaling by NaCl and its effect on primary root growth. We found that JA-responsive JAZ genes were up-regulated by salt stress in a COI1-dependent manner in the roots. Using a JA-Ile sensor we demonstrated that activation of JA signaling by salt stress occurs in the meristematic zone and stele of the differentiation zone and that this activation was dependent on JAR1 and proteasome functions. Another finding is that the elongation zone (EZ) and its cortical cells were significantly longer in JA-related mutants (AOS, COI1, JAZ3 and MYC2/3/4 genes) compared with wild-type plants under salt stress, revealing the participation of the canonical JA signaling pathway. Noteworthy, osmotic stress - a component of salt stress - inhibited cell elongation in the EZ in a COI1-dependent manner. We propose that salt stress triggers activation of the JA signaling pathway followed by inhibition of cell elongation in the EZ. We have shown that salt-inhibited root growth partially involves the jasmonate signaling pathway in Arabidopsis. PMID:27217545

  12. Antimicrobial and cytotoxic activities from Jatropha dioica roots.

    PubMed

    Silva-Belmares, Yesenia; Rivas-Morales, Catalina; Viveros-Valdez, Ezequiel; de la Cruz-Galicia, María Guadalupe; Carranza-Rosales, Pilar

    2014-05-01

    The antimicrobial and cytotoxic activities of organic extracts obtained from roots of the medicinal plant Jatropha dioica (Euphorbiaceae) were investigated. In order to evaluate their antimicrobial activity, the organic extracts were tested against clinical isolates of the human pathogens Bacillus cereus, Escherichia coli, Salmonella typhi, Staphylococcus aureus, Enterobacter aerogenes, Enterobacter cloacae, Salmonella typhimurium, Cryptococcus neoformans, Candida albicans, Candida parapsilosis and Sporothrix schenckii. Results revealed that the hexane extract possess the stronger activity and a broader microbicide spectrum compared to the acetone and ethanol extracts. The activity of hexane extract may be attributed in part to the presence of β-sitosterol, the major compound identified by bioautography. The hexane extract, as well as the bioactive fraction were not cytotoxic when assays were profiled against the normal cell lines Chang, OK and LLCPK-1 (IC50>1000 μg mL(-1)). PMID:26031013

  13. Active zones of mammalian neuromuscular junctions: formation, density, and aging

    PubMed Central

    Nishimune, Hiroshi

    2012-01-01

    Presynaptic active zones are synaptic vesicle release sites that playessential roles in the function and pathology of mammalian neuromuscular junctions (NMJs). The molecular mechanisms of active zone organization utilize presynaptic voltage-dependent calcium channels (VDCCs) in NMJs as scaffolding proteins. VDCCs interact extracellularly with the muscle-derived synapse organizer, laminin β2, and interact intracellularly with active zone-specific proteins, such as Bassoon, CAST/Erc2/ELKS2alpha, ELKS, Piccolo, and RIMs. These molecular mechanisms are supported by studies in P/Q- and N-type VDCCs double-knockout mice, and they are consistent with the pathological conditions of Lambert-Eaton myasthenic syndrome and Pierson syndrome, which are caused by autoantibodies against VDCCs or by a laminin β2 mutation. During normal postnatal maturation, NMJs maintain the density of active zones, while NMJs triple their size. However, active zones become impaired during aging. Propitiously, muscle exercise ameliorates the active zone impairment in aged NMJs, which suggests the potential for therapeutic strategies. PMID:23252894

  14. HEAT AND MASS TRANSFER IN THE VADOSE ZONE WITH PLANT ROOTS. (R825414)

    EPA Science Inventory

    Abstract

    The vadose zone is the intermediate medium between the atmosphere and groundwater. The modeling of the processes taking place in the vadose zone needs different approaches to those needed for groundwater transport problems because of the marked changes in envi...

  15. Association of shifting populations in the root zone microbiome of millet with enhanced crop productivity in the Sahel region (Africa).

    PubMed

    Debenport, Spencer J; Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P; McSpadden Gardener, Brian B

    2015-04-01

    This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and "Candidatus Koribacter" was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

  16. Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)

    PubMed Central

    Assigbetse, Komi; Bayala, Roger; Chapuis-Lardy, Lydie; Dick, Richard P.; McSpadden Gardener, Brian B.

    2015-01-01

    This study characterized specific changes in the millet root zone microbiome stimulated by long-term woody-shrub intercropping at different sites in Senegal. At the two study sites, intercropping with woody shrubs and shrub residue resulted in a significant increase in millet [Pennisetum glaucum (L.) R. Br.] yield (P < 0.05) and associated patterns of increased diversity in both bacterial and fungal communities in the root zone of the crop. Across four experiments, operational taxonomic units (OTUs) belonging to Chitinophaga were consistently significantly (P < 0.001) enriched in the intercropped samples, and “Candidatus Koribacter” was consistently significantly enriched in samples where millet was grown alone. Those OTUs belonging to Chitinophaga were enriched more than 30-fold in residue-amended samples and formed a distinct subgroup from all OTUs detected in the genus. Additionally, OTUs belonging to 8 fungal genera (Aspergillus, Coniella, Epicoccum, Fusarium, Gibberella, Lasiodiplodia, Penicillium, and Phoma) were significantly (P < 0.005) enriched in all experiments at all sites in intercropped samples. The OTUs of four genera (Epicoccum, Fusarium, Gibberella, and Haematonectria) were consistently enriched at sites where millet was grown alone. Those enriched OTUs in intercropped samples showed consistently large-magnitude differences, ranging from 30- to 1,000-fold increases in abundance. Consistently enriched OTUs in intercropped samples in the genera Aspergillus, Fusarium, and Penicillium also formed phylogenetically distinct subgroups. These results suggest that the intercropping system used here can influence the recruitment of potentially beneficial microorganisms to the root zone of millet and aid subsistence farmers in producing higher-yielding crops. PMID:25681183

  17. Analysis of the NASA AirMOSS Root Zone Soil Water and Soil Temperature from Three North American Ecosystems

    NASA Astrophysics Data System (ADS)

    Hagimoto, Y.; Cuenca, R. H.

    2015-12-01

    Root zone soil water and temperature are controlling factors for soil organic matter accumulation and decomposition which contribute significantly to the CO2 flux of different ecosystems. An in-situ soil observation protocol developed at Oregon State University has been deployed to observe soil water and temperature dynamics in seven ecological research sites in North America as part of the NASA AirMOSS project. Three instrumented profiles defining a transect of less than 200 m are installed at each site. All three profiles collect data for in-situ water and temperature dynamics employing seven soil water and temperature sensors installed at seven depth levels and one infrared surface temperature sensor monitoring the top of the profile. In addition, two soil heat flux plates and associated thermocouples are installed at one of three profiles at each site. At each profile, a small 80 cm deep access hole is typically made, and all below ground sensors are installed into undisturbed soil on the side of the hole. The hole is carefully refilled and compacted so that root zone soil water and temperature dynamics can be observed with minimum site disturbance. This study focuses on the data collected from three sites: a) Tonzi Ranch, CA; b) Metolius, OR and c) BERMS Old Jack Pine Site, Saskatchewan, Canada. The study describes the significantly different seasonal root zone water and temperature dynamics under the various physical and biological conditions at each site. In addition, this study compares the soil heat flux values estimated by the standard installation using the heat flux plates and thermocouples installed near the surface with those estimated by resolving the soil heat storage based on the soil water and temperature data collected over the total soil profile.

  18. Effect of ammonium sulfate, ammonium chloride and root-zone acidity on inorganic ion content of tobacco

    NASA Technical Reports Server (NTRS)

    Vessey, J. K.; Raper, C. D. Jr; Henry, L. T.; Raper CD, J. r. (Principal Investigator)

    1990-01-01

    Tobacco plants (Nicotiana tabacum L. cv NC82) were supplied with (NH4)2SO4 or NH4Cl at root-zone pH of 6.0 and 4.5 in hydroponic culture for 28 days. Dry matter accumulation, total N and C content, and leaf area and number were not affected by the NH4+ source or root-zone pH. Plants supplied with NH4Cl accumulated up to 1.2 mM Cl g DW-1, but accumulated 37% less inorganic H2PO4- and 47% less SO4(2-) than plants supplied with (NH4)2SO4. The large Cl- accumulation resulted in NH4Cl- supplied plants having a 31% higher inorganic anion (NO3-, H2, PO4-, SO4(2-), and Cl-) charge. This higher inorganic anion charge in the NH4Cl-supplied plants was balanced by a similar increase in K+ charge. Plants supplied with NH4Cl accumulated greater concentrations of Cl- in leaves (up to 5.1% of DW) than plants supplied with (NH4)2SO4 (less than -% DW). Despite the high Cl- concentration of leaves in NH4Cl supplied plants, these plants showed no symptoms of Cl- toxicity. This demonstrates that toxicity symptoms are not due solely to an interaction between high Cl- concentration in tissue and NH4+ nutrition. The increase in root-zone acidity to pH 4.5 from 6.0 did not induce toxicity symptoms.

  19. Root Growth Maintenance at Low Water Potentials (Increased Activity of Xyloglucan Endotransglycosylase and Its Possible Regulation by Abscisic Acid).

    PubMed Central

    Wu, Y.; Spollen, W. G.; Sharp, R. E.; Hetherington, P. R.; Fry, S. C.

    1994-01-01

    Previous work suggested that an increase in cell wall-loosening contributes to the maintenance of maize (Zea mays L.) primary root elongation at low water potentials ([psi]w). It was also shown that root elongation at low [psi]w requires increased levels of abscisic acid (ABA). In this study we investigated the effects of low [psi]w and ABA status on xyloglucan endotransglycosylase (XET) activity in the root elongation zone. XET is believed to contribute to wall-loosening by reversibly cleaving xyloglucan molecules that tether cellulose microfibrils. The activity of XET per unit fresh weight in the apical 10 mm (encompassing the elongation zone) was constant at high [psi]w but increased by more than 2-fold at a [psi]w of -1.6 MPa. Treatment with fluridone to decrease ABA accumulation greatly delayed the increase in activity at low [psi]w. This effect was largely overcome when internal ABA levels were restored by exogenous application. Spatial distribution studies showed that XET activity was increased in the apical 6 mm at low [psi]w whether expressed per unit fresh weight, total soluble protein, or cell wall dry weight, corresponding to the region of continued elongation. Treatment with fluridone progressively inhibited the increase in activity with distance from the apex, correlating with the pattern of inhibition of elongation. Added ABA partly restored activity at all positions. The increase in XET activity at low [psi]w was due to maintenance of the rate of deposition of activity despite decreased deposition of wall material. The loss of activity associated with decreased ABA was due to inhibition of the deposition of activity. The results demonstrate that increased XET activity is associated with maintenance of root elongation at low [psi]w and that this response requires increased ABA. PMID:12232354

  20. Growth maintenance of the maize primary root at low water potentials involves increases in cell-wall extension properties, expansin activity, and wall susceptibility to expansins.

    PubMed Central

    Wu, Y; Sharp, R E; Durachko, D M; Cosgrove, D J

    1996-01-01

    Previous work on the growth biophysics of maize (Zea mays L.) primary roots suggested that cell walls in the apical 5 mm of the elongation zone increased their yielding ability as an adaptive response to low turgor and water potential (psi w). To test this hypothesis more directly, we measured the acid-induced extension of isolated walls from roots grown at high (-0.03 MPa) or low (-1.6 MPa) psi w using an extensometer. Acid-induced extension was greatly increased in the apical 5 mm and was largely eliminated in the 5- to 10-mm region of roots grown at low psi w. This pattern is consistent with the maintenance of elongation toward the apex and the shortening of the elongation zone in these roots. Wall proteins extracted from the elongation zone possessed expansin activity, which increased substantially in roots grown at low psi w. Western blots likewise indicated higher expansin abundance in the roots at low psi w. Additionally, the susceptibility of walls to expansin action was higher in the apical 5 mm of roots at low psi w than in roots at high psi w. The basal region of the elongation zone (5-10 mm) did not extend in response to expansins, indicating that loss of susceptibility to expansins was associated with growth cessation in this region. Our results indicate that both the increase in expansin activity and the increase in cell-wall susceptibility to expansins play a role in enhancing cell-wall yielding and, therefore, in maintaining elongation in the apical region of maize primary roots at low psi w. PMID:11536740

  1. Molluscicidal activity of Punica granatum bark and Canna indica root.

    PubMed

    Tripathi, S M; Singh, D K

    2000-11-01

    The molluscicidal activity of Punica granatum Linn. (Punicaceae) and Canna indica Linn. (Cannaceae) against the snail Lymnaea acuminata was studied. The molluscicidal activity of P. granatum bark and C. indica root was found to be both time and dose dependent. The toxicity of P. granatum bark was more pronounced than that of C. indica. The 24 h LC(50) of the column-purified root of C. indica was 6.54 mg/l whereas that of the column-purified bark of P. granatum was 4.39 mg/l. The ethanol extract of P. granatum (24 h LC(50): 22.42 mg/l) was more effective than the ethanol extract of C. indica (24 h LC(50): 55.65 mg/l) in killing the test animals. P. granatum and C. indica may be used as potent molluscicides since the concentrations used to kill the snails were not toxic for the fish Colisa fasciatus, which shares the same habitat with the snail L. acuminata. PMID:11050667

  2. Antiplasmodial activity of Cryptolepis sanguinolenta alkaloids from leaves and roots.

    PubMed

    Paulo, A; Gomes, E T; Steele, J; Warhurst, D C; Houghton, P J

    2000-02-01

    The roots of Cryptolepis sanguinolenta have been investigated for their chemical composition since 1931 but so far no studies on the leaves have been reported although they are used in traditional medicine in Guinea-Bissau. Two new alkaloids identified as cryptolepinoic acid (1) and methyl cryptolepinoate (2) and the known alkaloids cryptolepine (4), hydroxycryptolepine (5/5a) and quindoline (6), were isolated from the ethanolic and chlorophormic leaf extracts. Aqueous and ethanolic extracts of the leaves and roots and seven alkaloids isolated from those extracts were tested in vitro against Plasmodium falciparum K1 (multidrug-resistant strain) and T996 (chloroquine-sensitive clone). All the extracts were shown to give 90% inhibition of P. falciparum K1 growth at concentrations < 23 micrograms/ml. Cryptolepine (4) was the most active alkaloid tested with IC50 values (0.23 microM to K1; 0.059 microM to T996) comparable with chloroquine (0.26 microM to K1; 0.019 microM to T996). The indolobenzazepine alkaloid cryptoheptine (7) was the second most active with IC50 values of 0.8 microM (K1) and 1.2 microM (T996). Cryptolepinoic acid (1) showed no significant activity while its ethyl ester derivative 3 was active against P. falciparum K1 (IC50 = 3.7 microM). All the indoloquinoline alkaloids showed cross-resistance with chloroquine but not the indolobenzazepine alkaloid 7. It was noticed that alkaloids with weakly basic characteristics were active whereas other structurally related alkaloids with different acid-base profiles were inactive. These observations are in agreement with the antimalarial mechanism of action for quinolines. PMID:10705730

  3. Is There any Relationship Between Active Tabriz Fault Zone and Bozkush Fault Zones, NW Iran?

    NASA Astrophysics Data System (ADS)

    ISIK, V.; Saber, R.; Caglayan, A.

    2012-12-01

    Tectonic plate motions and consequent earthquakes can be actively observed along the northwestern Iran. The Tabriz fault zone (TFZ), also called the North Tabriz fault, active right-lateral strike-slip fault zone with slip rates estimated as ~8 mm/yr, has been vigorously deforming much of northwestern Iran for over the past several million years. Historical earthquakes on the TFZ consist of large magnitude, complimentary rupture length and changed the landscape of regions surrounding the fault zone. The TFZ in the city of Bostanabad is more segmented with several strands and joined by a series of WNW-ESE trending faults, called the Bozkush fault zones. The Bozkush fault zones (BFZ's) (south and north), bounding arch-shaped Bozkush mountains, generates not only hundreds of small earthquakes each year but also has provided significant earthquakes that have been historically documented. The rock units deformed within the BFZ's include Eocene-Oligocene volcanic rocks with intercalation limestone, Oligo-Miocene clastic rocks with intercalation gypsiferous marl and Plio-Quaternary volcano-sedimentary rocks, travertine and alluvium. The North and South Bozkush fault zones are characterized by development of structures typically associated with transpression. These include right-lateral strike-slip faults, thrust faults and foldings. Our field studies indicate that these zones include step to sub-vertical fault surfaces trending NW and NE with slickenlines. Slickensides preserve brittle kinematic indicators (e.g., Riedel shear patterns, slickenside marks) suggesting both dextral displacements and top-to-the-NE/NW and-SE/SW sense of shearing. Besides, mesoscopic and microscopic ductile kinematic indicators (e.g., asymmetric porphyroclasts, C/S fabrics) within Miocene gypsum marl show dextral displacements. Fault rocks along most of these faults consist of incohesive fault breccia and gauge. Adjacent to the fault contact evidence of bedding in Oligo-Miocene and Plio

  4. Denitrification Potential, Root Biomass, and Organic Matter in Degraded and Restored Urban Riparian Zones

    EPA Science Inventory

    Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitrogen...

  5. Denitrification Potential, Root Biomass and Organic Matter in Degraded and Restored Urban Riparian Zones

    EPA Science Inventory

    Hydrologic changes associated with urbanization often lead to lower water tables and drier, more aerobic soils in riparian zones. These changes reduce the potential for denitrification, an anaerobic microbial process that converts nitrate, a common water pollutant, into nitroge...

  6. Triggered tremors beneath the seismogenic zone of an active fault zone, Kyushu, Japan

    NASA Astrophysics Data System (ADS)

    Miyazaki, Masahiro; Matsumoto, Satoshi; Shimizu, Hiroshi

    2015-11-01

    Non-volcanic tremors were induced by the surface waves of the 2012 Sumatra earthquake around the Hinagu fault zone in Kyushu, Japan. We inferred from dense seismic observation data that the hypocenters of these tremors were located beneath the seismogenic zone of the Hinagu fault. Focal mechanisms of the tremors were estimated using S-wave polarization angles. The estimated focal mechanisms show similarities to those of shallow earthquakes in this region. In addition, one of the nodal planes of the focal mechanisms is almost parallel to the strike direction of the Hinagu fault. These observations suggest that the tremors were triggered at the deeper extension of the active fault zone under stress conditions similar to those in the shallower seismogenic region. A low-velocity anomaly beneath the hypocentral area of the tremors might be related to the tremor activity.

  7. Targeted expression of SbMATE in the root distal transition zone is responsible for sorghum aluminum resistance

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Aluminum (Al) toxicity is one of the major limiting factors for crop production on acid soils that comprise significant portions of the world’s lands. Al resistance in the cereal crop, Sorghum bicolor, is mainly achieved by Al-activated root apical citrate exudation, which is mediated by the plasma ...

  8. Ecophysiology of Trembling Aspen in Response to Root-Zone Conditions and Competition on Reclaimed Mine Soil.

    NASA Astrophysics Data System (ADS)

    Bockstette, S.; Landhäusser, S.; Pinno, B.; Dyck, M. F.

    2014-12-01

    Reclaimed soils are typically characterized by increased bulk densities, penetration resistances and poor soil structure as well as associated problems with hydrology and aeration. As a result, available rooting space for planted tree seedlings is often restricted to a shallow layer of topsoil, which is usually of higher quality and is cultivated prior to planting. This may hinder the development of healthy root systems, thus drastically increasing the risk for plant stress by limiting access to soil resources such as water, nutrients and oxygen. These problems are exacerbated when herbaceous plants compete for the same resources within this limited root-zone. To understand how limited rooting space affects the physiology of young trees, we experimentally manipulated soil conditions and levels of competition at a reclaimed mine site in central Alberta, Canada. The site was characterized by heavily compacted, fine textured subsoil (~2.0 Mg ha-1), capped with 15 cm of topsoil (~1.5 Mg ha-1). In a replicated study (n=6) half the plots were treated with a subsoil plow to a depth of about 60 cm to increase available rooting spece. Subsequently, trembling aspen (Populus tremuloides Michx.) and smooth brome (Bromus inermis L.) were planted to create four vegetation covers: aspen (a), brome (b), aspen + brome (ab) and control (c) (no vegetation). Various soil properties, including texture, bulk density, penetration resistance and water availability, in conjunction with plant parameters such as root and shoot growth, leaf area development, sap flow, and stomatal conductance have since been monitored, both in-situ and through destructive sampling. Our results indicate that the soil treatment was effective in lowering bulk densities and penetration resistance, while improving moisture retention characteristics. Tree seedling growth and leaf area development were significantly greater without competition, but did not differ between soil treatments. The soil treatment generally

  9. Early development of rat ventral root transitional zone: an immunohistochemical and morphometric study.

    PubMed

    O'Brien, D; Dockery, P; McDermott, K; Fraher, J

    2001-01-01

    Bundles of ventral motoneuron axons cross the white matter of the spinal cord, emerge through the cord surface at the CNS-PNS transitional zone (TZ) and continue in the PNS as ventral rootlets. This study identifies immunohistochemical and morphometric changes which characterise the key events in early TZ formation in the rat. E18 is a landmark stage, since it is then that the major events of TZ differentiation are initiated. In the glial processes associated with the TZ, vimentin expression decreases, while that of GFAP increases. In the proximal rootlets the transient expression of CNS markers such as GFAP and of neural adhesion molecules such as HNK-1/N-CAM begin to decrease. Their resulting differential expression clearly defines the CNS-PNS interface. These changes coincide with the arrival of glial nuclei at the TZ. Cell clusters which appear on proximal ventral rootlet surfaces shortly after their emergence from the cord, have by E18 formed an extensive matrix of processes which segregates the axon bundle. This comprises the earliest of two well-defined barriers across the axon bundle. An important function may be to prevent Schwann cell invasion of the cord. Cluster cells display some immunohistochemical features in common with Schwann cells. The second barrier becomes fully established only at P2 and forms the definitive CNS-PNS interface. It consists of processes arising from astrocytes surrounding the TZ. Changes in the nuclear density of the cell types correspond closely to their segregating activity. The immunohistochemical and ultrastructural changes complement one another to deepen and enhance understanding of TZ development. PMID:11577242

  10. Particle Filter-based assimilation algorithms for improved estimation of root-zone soil moisture under dynamic vegetation conditions

    NASA Astrophysics Data System (ADS)

    Nagarajan, Karthik; Judge, Jasmeet; Graham, Wendy D.; Monsivais-Huertero, Alejandro

    2011-04-01

    In this study, we implement Particle Filter (PF)-based assimilation algorithms to improve root-zone soil moisture (RZSM) estimates from a coupled SVAT-vegetation model during a growing season of sweet corn in North Central Florida. The results from four different PF algorithms were compared with those from the Ensemble Kalman Filter (EnKF) when near-surface soil moisture was assimilated every 3 days using both synthetic and field observations. In the synthetic case, the PF algorithm with the best performance used residual resampling of the states and obtained resampled parameters from a uniform distribution and provided reductions of 76% in root mean square error (RMSE) over the openloop estimates. The EnKF provided the RZSM and parameter estimates that were closer to the truth than the PF with an 84% reduction in RMSE. When field observations were assimilated, the PF algorithm that maintained maximum parameter diversity offered the largest reduction of 16% in root mean square difference (RMSD) over the openloop estimates. Minimal differences were observed in the overall performance of the EnKF and PF using field observations since errors in model physics affected both the filters in a similar manner, with maximum reductions in RMSD compared to the openloop during the mid and reproductive stages.

  11. Basaltic Diatreme To Root Zone Volcanic Processes In Tuzo Kimberlite Pipe (Gahcho Kué Kimberlite Field, NWT, Canada)

    NASA Astrophysics Data System (ADS)

    Seghedi, I.; Kurszlaukis, S.; Maicher, D.

    2009-05-01

    Tuzo pipe is infilled by a series of coherent and fragmental kimberlite facies types typical for a diatreme to root zone transition level. Coherent or transitional coherent kimberlite facies dominate at depth, but also occur at shallow levels, either as dikes or as individual or agglutinated coherent kimberlite clasts (CKC). Several fragmental kimberlite varieties fill the central and shallow portions of the pipe. The definition, geometry and extent of the geological units are complex and are controlled by vertical elements. Specific for Tuzo is: (1) high abundance of locally derived xenoliths (granitoids and minor diabase) between and within the kimberlite phases, varying in size from sub-millimeter to several tens of meters, frequent in a belt-like domain between 120-200 m depth in the pipe; (2) the general presence of CKC, represented by round-subround, irregular to amoeboid-shaped clasts with a macrocrystic or aphanitic texture, mainly derived from fragmentation of erupting magma and less commonly from previously solidified kimberlite, as well as recycled pyroclasts. In addition, some CKC are interpreted to be intersections of a complex dike network. This diversity attests formation by various volcanic processes, extending from intrusive to explosive; (3) the presence of bedded polymict wall- rock and kimberlite breccia occurring mostly in deep levels of the pipe below 345 m depth. The gradational contact relationships of these deposits with the surrounding kimberlite rocks and their location suggest that they formed in situ. The emplacement of Tuzo pipe involved repetitive volcanic explosions alternating with periods of relative quiescence causing at least partial consolidation of some facies. The volume deficit in the diatreme-root zone after each eruption was compensated by gravitational collapse of overlying diatreme tephra and pre-fragmented wall-rock xenoliths. Highly explosive phases were alternating with weak explosions or intrusive phases, suggesting

  12. Humic Acids Isolated from Earthworm Compost Enhance Root Elongation, Lateral Root Emergence, and Plasma Membrane H+-ATPase Activity in Maize Roots1

    PubMed Central

    Canellas, Luciano Pasqualoto; Olivares, Fabio Lopes; Okorokova-Façanha, Anna L.; Façanha, Arnoldo Rocha

    2002-01-01

    Earthworms (Eisenia foetida) produce humic substances that can influence plant growth by mechanisms that are not yet clear. In this work, we investigated the effects of humic acids (HAs) isolated from cattle manure earthworm compost on the earliest stages of lateral root development and on the plasma membrane H+-ATPase activity. These HAs enhance the root growth of maize (Zea mays) seedlings in conjunction with a marked proliferation of sites of lateral root emergence. They also stimulate the plasma membrane H+-ATPase activity, apparently associated with an ability to promote expression of this enzyme. In addition, structural analysis reveals the presence of exchangeable auxin groups in the macrostructure of the earthworm compost HA. These results may shed light on the hormonal activity that has been postulated for these humic substances. PMID:12481077

  13. De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure.

    PubMed

    Hill, Camilla Beate; Cassin, Andrew; Keeble-Gagnère, Gabriel; Doblin, Monika S; Bacic, Antony; Roessner, Ute

    2016-01-01

    Plant roots are the first organs sensing and responding to salinity stress, manifested differentially between different root types, and also at the individual tissue and cellular level. High genetic diversity and the current lack of an assembled map-based sequence of the barley genome severely limit barley research potential. We used over 580 and 600 million paired-end reads, respectively, to create two de novo assemblies of a barley landrace (Sahara) and a malting cultivar (Clipper) with known contrasting responses to salinity. Generalized linear models were used to statistically access spatial, treatment-related, and genotype-specific responses. This revealed a spatial gene expression gradient along the barley root, with more differentially expressed transcripts detected between different root zones than between treatments. The root transcriptome also showed a gradual transition from transcripts related to sugar-mediated signaling at the root meristematic zone to those involved in cell wall metabolism in the elongation zone, and defense response-related pathways toward the maturation zone, with significant differences between the two genotypes. The availability of these additional transcriptome reference sets will serve as a valuable resource to the cereal research community, and may identify valuable traits to assist in breeding programmes. PMID:27527578

  14. De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure

    PubMed Central

    Hill, Camilla Beate; Cassin, Andrew; Keeble-Gagnère, Gabriel; Doblin, Monika S.; Bacic, Antony; Roessner, Ute

    2016-01-01

    Plant roots are the first organs sensing and responding to salinity stress, manifested differentially between different root types, and also at the individual tissue and cellular level. High genetic diversity and the current lack of an assembled map-based sequence of the barley genome severely limit barley research potential. We used over 580 and 600 million paired-end reads, respectively, to create two de novo assemblies of a barley landrace (Sahara) and a malting cultivar (Clipper) with known contrasting responses to salinity. Generalized linear models were used to statistically access spatial, treatment-related, and genotype-specific responses. This revealed a spatial gene expression gradient along the barley root, with more differentially expressed transcripts detected between different root zones than between treatments. The root transcriptome also showed a gradual transition from transcripts related to sugar-mediated signaling at the root meristematic zone to those involved in cell wall metabolism in the elongation zone, and defense response-related pathways toward the maturation zone, with significant differences between the two genotypes. The availability of these additional transcriptome reference sets will serve as a valuable resource to the cereal research community, and may identify valuable traits to assist in breeding programmes. PMID:27527578

  15. From root zone modelling to regional forecasting of nitrate concentration in recharge flows - The case of the Walloon Region (Belgium)

    NASA Astrophysics Data System (ADS)

    Sohier, C.; Degré, A.; Dautrebande, S.

    2009-05-01

    SummaryIn order to model the nitrate concentration of the recharge water in a spatially distributed way for the agricultural areas of the Walloon Region of Belgium, the EPIC model was first adapted to the specific soil description by modifying the reservoir sizes. It was also adapted to the regional crop production by modifying classcrop files in relation with observed data (both aerial and underground crop growth, yield) in wheat, sugar beet, and potato fields. As the vadose zone presents a depth between 1.5 and 104 m in this region, new reservoirs were added according to the geological descriptions available. Deep nitrate transfer was validated in a specific site where cropping history was known. Nitrate nitrogen after harvest in the root zone was validated for wheat within different crop rotations using the first results of a nitrate-monitoring program planned by the authorities to test the effectiveness of the mitigation measures in agriculture. This extended model was also linked to a GIS (geographical information system) using 1 km 2-cells. All the required data were rasterised to allow HRU (hydrological response unit) identification within the cells. The cell's daily water flows are weighted flows of each HRU depending on their relative area within the cell. Water balances at catchment scale allow us to validate the calculation. Taking into account the evolution of distributed land use and observed climatic data, we have built maps of fast indicators and long-term indicators. The first map represents nitrate concentration in the water leaving the root zone and the second one represents the time transfer for nitrate from 1.5 m depth to the groundwater table and nitrate concentration in recharge water. These maps constitute major tools for nitrogen management at a regional level.

  16. Anti-inflammatory activity of root bark and stem bark of Shyonaka

    PubMed Central

    Doshi, Krunal; Ilanchezhian, R; Acharya, Rabinarayan; Patel, B. R.; Ravishankar, B.

    2012-01-01

    Background: Shyonaka (Oroxylum indicum Vent.; Bignoniaceae) root bark is one of the ingredients of dashamoola (a group of 10 roots), and is used for its anti-inflammatory and analgesic action in a number of compound formulations in Ayurveda. Aim: Ayurvedic Pharmacopoeia of India (API) recommends using the stem bark instead of root bark. Material and Methods: An attempt has been made to study the anti-inflammatory activity of both root bark and stem bark kashaya (decoction) experimentally. Conclusion Results showed significant anti-inflammatory activity of root bark and stem bark decoction. PMID:23326090

  17. Long term global scale root zone soil moisture monitoring at ECMWF using a surface-only land data assimilation system

    NASA Astrophysics Data System (ADS)

    Albergel, Clement; de Rosnay, Patricia; Balsamo, Gianpaolo; Dutra, Emanuel; Kral, Tomas; Munoz-Sabater, Joaquin; Isaksen, Lars; Boussetta, Souhail; Massari, Christian; Brocca, Luca

    2015-04-01

    In the framework of the H-SAF (Satellite Application Facility on Support to Operational Hydrology and Water Management) project of EUMETSAT, ECMWF is developing a re-analysis of soil moisture that will cover 1992-2014 and will make use of satellite derived surface soil moisture (SSM) from ERS-1&2, ASCAT. This study presents the first steps toward the conception of this long term global scale root zone soil moisture; a surface-only Land Data Assimilation System (so-LDAS) able to ingest satellite-derived SSM observations is tested at global scale to increase prediction accuracy for surface and root zone soil moisture. The so-LDAS is defined as an offline sequential data assimilation system (simplified Extended Kalman Filter) based on a Land Surface Model (HTESSEL) uncoupled with the atmosphere, it is driven by ERA-Interim observations based atmospheric forcing. Its impact is assessed over 2010-2013 (1) using local in situ measurements of surface and root zone soil moisture and (2) at a basin scale initialising an event based Rainfall-Runoff hydrological model. Additionally to an open loop experiment (OL no analysis) three data assimilation experiments are used with different specification of the error matrices. The first one (Asc1) has been set up to test the so-LDAS with a soil moisture standard deviation of σb=0.01 m3m-3 for the first three layers of soil analysed and σo=0.02 m3m-3 for ASCAT SSM. σb was then doubled (Asc2) and σo set to 0.05 m3m-3 to be more consistent with satellite derived SSM errors deduced from previous independent studies. In a third experiment (Asc3), σo is set to 0.05 m3m-3, σb, is set to 0.1 × (wfc - wwilt), where wfc and wwilt are the volumetric water content at field capacity and at permanent wilting point, which depend on soil texture.

  18. Alpine and pre-Alpine magmatism in the root-zone of the western Central Alps

    NASA Astrophysics Data System (ADS)

    Romer, R. L.; Schärer, U.; Steck, Albrecht

    1996-03-01

    The highest grade of metamorphism and associated structural elements in orogenic belts may be inherited from earlier orogenic events. We illustrate this point using magmatic and metamorphic rocks from the southern steep belt of the Lepontine Gneiss Dome (Central Alps). The U-Pb zircon ages from an anatectic granite at Verampio and migmatites at Corcapolo and Lavertezzo yield 280 290 Ma, i.e., Hercynian ages. These ages indicate that the highest grade of metamorphism in several crystalline nappes of the Lepontine Gneiss Dome is pre-Alpine. Alpine metamorphism reached sufficiently high grade to reset the Rb-Sr and K-Ar systematics of mica and amphibole, but generally did not result in crustal melting, except in the steep belt to the north of the Insubric Line, where numerous 29 to 26 Ma old pegmatites and aplites had intruded syn- and post-kinematically into gneisses of the ductile Simplon Shear Zone. The emplacement age of these pegmatites gives a minimum estimate for the age of the Alpine metamorphic peak in the Monte Rosa nappe. The U-Pb titanite ages of 33 to 31 Ma from felsic porphyritic veins represent a minimum-age estimate for Alpine metamorphism in the Sesia Zone. A porphyric vein emplaced at 448±5 Ma (U-Pb monazite) demonstrates that there existed a consolidated Caledonian basement in the Sesia Zone.

  19. Downscaling Satellite Data for Predicting Catchment-scale Root Zone Soil Moisture with Ground-based Sensors and an Ensemble Kalman Filter

    NASA Astrophysics Data System (ADS)

    Lin, H.; Baldwin, D. C.; Smithwick, E. A. H.

    2015-12-01

    Predicting root zone (0-100 cm) soil moisture (RZSM) content at a catchment-scale is essential for drought and flood predictions, irrigation planning, weather forecasting, and many other applications. Satellites, such as the NASA Soil Moisture Active Passive (SMAP), can estimate near-surface (0-5 cm) soil moisture content globally at coarse spatial resolutions. We develop a hierarchical Ensemble Kalman Filter (EnKF) data assimilation modeling system to downscale satellite-based near-surface soil moisture and to estimate RZSM content across the Shale Hills Critical Zone Observatory at a 1-m resolution in combination with ground-based soil moisture sensor data. In this example, a simple infiltration model within the EnKF-model has been parameterized for 6 soil-terrain units to forecast daily RZSM content in the catchment from 2009 - 2012 based on AMSRE. LiDAR-derived terrain variables define intra-unit RZSM variability using a novel covariance localization technique. This method also allows the mapping of uncertainty with our RZSM estimates for each time-step. A catchment-wide satellite-to-surface downscaling parameter, which nudges the satellite measurement closer to in situ near-surface data, is also calculated for each time-step. We find significant differences in predicted root zone moisture storage for different terrain units across the experimental time-period. Root mean square error from a cross-validation analysis of RZSM predictions using an independent dataset of catchment-wide in situ Time-Domain Reflectometry (TDR) measurements ranges from 0.060-0.096 cm3 cm-3, and the RZSM predictions are significantly (p < 0.05) correlated with TDR measurements [r = 0.47-0.68]. The predictive skill of this data assimilation system is similar to the Penn State Integrated Hydrologic Modeling (PIHM) system. Uncertainty estimates are significantly (p < 0.05) correlated to cross validation error during wet and dry conditions, but more so in dry summer seasons. Developing an

  20. The Abundance of Pink-Pigmented Facultative Methylotrophs in the Root Zone of Plant Species in Invaded Coastal Sage Scrub Habitat

    PubMed Central

    Irvine, Irina C.; Brigham, Christy A.; Suding, Katharine N.; Martiny, Jennifer B. H.

    2012-01-01

    Pink-pigmented facultative methylotrophic bacteria (PPFMs) are associated with the roots, leaves and seeds of most terrestrial plants and utilize volatile C1 compounds such as methanol generated by growing plants during cell division. PPFMs have been well studied in agricultural systems due to their importance in crop seed germination, yield, pathogen resistance and drought stress tolerance. In contrast, little is known about the PPFM abundance and diversity in natural ecosystems, let alone their interactions with non-crop species. Here we surveyed PPFM abundance in the root zone soil of 5 native and 5 invasive plant species along ten invasion gradients in Southern California coastal sage scrub habitat. PPFMs were present in every soil sample and ranged in abundance from 102 to 105 CFU/g dry soil. This abundance varied significantly among plant species. PPFM abundance was 50% higher in the root zones of annual or biennial species (many invasives) than perennial species (all natives). Further, PPFM abundance appears to be influenced by the plant community beyond the root zone; pure stands of either native or invasive species had 50% more PPFMs than mixed species stands. In sum, PPFM abundance in the root zone of coastal sage scrub plants is influenced by both the immediate and surrounding plant communities. The results also suggest that PPFMs are a good target for future work on plant-microorganism feedbacks in natural ecosystems. PMID:22383990

  1. Changes in polyamines, auxins and peroxidase activity during in vitro rooting of Fraxinus angustifolia shoots: an auxin-independent rooting model.

    PubMed

    Tonon, G; Kevers, C; Gaspar, T

    2001-07-01

    Among shoots of Fraxinus angustifolia Vahl raised in vitro, 76% rooted after culture on root induction medium for 5 days in darkness followed by culture on root expression medium for 15 days in light. The addition of 20.7 microM indole-butyric acid (IBA) to the root induction medium did not significantly increase the rooting percentage (88%). Putrescine, spermidine, cyclohexylamine (CHA) and aminoguanidine (AG) enhanced rooting up to 100% (98.66% for AG), when applied during root induction in the absence of IBA, otherwise these compounds inhibited rooting, as did spermine and difluoromethylornithine (DFMO) + difluoromethylarginine (DFMA). The root induction phase was characterized by a temporary increase in endogenous free indole-acetic acid (IAA) and putrescine concentrations during root induction, whereas the root expression phase was characterized by increased peroxidase activity and low concentrations of polyamines. These changes were specifically associated with the rooting process and did not depend on the presence of exogenous IBA, because application of exogenous IBA enhanced the amount of IAA in the cuttings but did not affect rooting or the pattern of changes in polyamines and peroxidase. The effects of CHA, AG and DFMO + DFMA on endogenous concentrations of auxins and polyamines highlight the close relationship between the effects of IAA and putrescine in root induction and suggest that polyamine catabolism has an important role in root formation and elongation. PMID:11446994

  2. Root zone temperature affects the phytoextraction of Ba, Cl, Sn, Pt, and Rb using potato plants (Solanum tuberosum L. var. Spunta) in the field.

    PubMed

    Baghour, M; Moreno, D A; Víllora, G; Hernández, J; Castilla, N; Romero, L

    2002-01-01

    Three consecutive years of field experiments were conducted to investigate how different root-zone temperatures, manipulated by using different mulches, affect the phytoextraction of Ba, Cl, Sn, Pt and Rb in different organs of potato plants (roots, tubers, stems and leaves). Four different plastic covers were used (T1: transparent polyethylene; T2: white polyethylene; T3: white and black coextruded polyethylene, and T4: black polyethylene), using uncovered plants as control (T0). The different treatments had a significant effect on mean root zone temperatures (T0 = 16 degrees C, T1 = 20 degrees C, T2 = 23 degrees C, T3 = 27 degrees C and T4 = 30 degrees C) and induced a significantly different response in Ba, Cl, Sn, Pt and Rb concentration and accumulation. The T3 treatment gave rise to the greatest phytoextraction of Ba, Pt, Cl and Sn in the roots, leaflets and tubers. In terms of the relative distribution of the phytoaccumulated elements (as percentage of the total within the plant), Pt and Ba accumulated mainly in the roots whereas Rb, Sn and Cl accumulated primarily in tubers, establishing a close relationship between the biomass development of each organ and phytoaccumulation capacity of metals in response to temperature in the root zone. PMID:11846271

  3. Contrasting physiological effects of partial root zone drying in field-grown grapevine (Vitis vinifera L. cv. Monastrell) according to total soil water availability

    PubMed Central

    Romero, Pascual; Dodd, Ian C.; Martinez-Cutillas, Adrian

    2012-01-01

    Different spatial distributions of soil moisture were imposed on field-grown grapevines by applying the same irrigation volumes to the entire (DI; deficit irrigation) or part of the (PRD; partial root zone drying) root zone. Five treatments were applied: controls irrigated at 60% ETc (crop evapotranspiration) for the whole season (308 mm year−1); DI-1 and PRD-1 that received the same irrigation as controls before fruit set, 30% ETc from fruit set to harvest and 45% ETc post-harvest (192 mm year−1); and DI-2 and PRD-2 that were the same, except that 15% ETc was applied from fruit set to harvest (142 mm year−1). Compared with DI-1, PRD-1 maintained higher leaf area post-veraison and increased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, but decreased intrinsic gas exchange efficiency without causing differences in leaf xylem abscisic acid (ABA) concentration. Compared with DI-2, PRD-2 increased leaf xylem ABA concentration and decreased root water uptake, whole-plant hydraulic conductance, leaf transpiration, stomatal conductance, and photosynthesis, mainly at the beginning of PRD cycles. Distinctive PRD effects (e.g. greater stomatal closure) depended on the volumetric soil water content of the wet root zone, as predicted from a model of root-to-shoot ABA signalling. PMID:22451721

  4. Methanolic extracts of Withania somnifera leaves, fruits and roots possess antioxidant properties and antibacterial activities

    PubMed Central

    2012-01-01

    Background Withania somnifera, also known as ashwagandha, is an important herb in ayurvedic and indigenous medical systems. The present study was designed to evaluate the antioxidant and antibacterial activities of an 80% aqueous methanolic extract of W. somnifera roots (WSREt), fruits (WSFEt) and leaves (WSLEt). Methods Several assays were performed to determine the antioxidant properties of this herb including 1,1-diphenyl-2-picrylhydrazyl radical (DPPH) scavenging activity, ferric reducing antioxidant power (FRAP), ferrous chelation and inhibition of β-carotene bleaching. Results The values for DPPH, FRAP, ferrous chelation and inhibition of β carotene bleaching for the three types of extracts ranged from 101.73-801.93 μg/ml, 2.26-3.29 mM Fe/kg, 0.22-0.65 mg/ml and 69.87-79.67%, respectively, indicating that W. somnifera, particularly the leaves, possesses significant antioxidant properties. The mean ascorbic acid content was 20.60-62.60 mg/100 g, and the mean anthocyanin content was 2.86-12.50 mg/100 g. Antibacterial activities were measured using the agar well diffusion method and five pathogenic Gram-negative bacteria: Escherichia coli, Salmonella typhi, Citrobacter freundii, Pseudomonas aeruginosa and Klebsiella pneumoniae. The leaf extracts displayed the highest activity against S. typhi (32.00 ± 0.75 mm zone of inhibition), whereas the lowest activity was against K. pneumoniae (19.00 ± 1.48 mm zone of inhibition). The lowest minimum inhibitory concentration value was 6.25 mg/ml, which was against S. typhi, followed by 12.5 mg/ml against E. coli. Conclusion In addition to its antioxidant properties, W. somnifera exhibited significant antibacterial activities against Gram-negative bacteria, particularly S. typhi. PMID:23039061

  5. Structural Analysis of Active North Bozgush Fault Zone (NW Iran)

    NASA Astrophysics Data System (ADS)

    Saber, R.; Isik, V.; Caglayan, A.

    2013-12-01

    NW Iran is one of the seismically active regions between Zagros Thrust Belt at the south and Caucasus at the north. Not only large magnitude historical earthquakes (Ms>7), but also 1987 Bozgush, 1997 Ardebil (Mw 6.1) and 2012 Ahar-Varzagan (Mw 6.4) earthquakes reveal that the region is seismically active. The North Bozgush Fault Zone (NBFZ) in this region has tens of kilometers in length and hundreds of meters in width. The zone has produced some large and destructive earthquakes (1593 M:6.1 and 1883 M:6.2). The NBFZ affects the Cenozoic units and along this zone Eocene units thrusted over Miocene and/or Plio-Quaternary sedimentary units. Together with morphologic features (stream offsets and alluvial fan movements) affecting the young unites reveal that the zone is active. The zone is mainly characterized by strike-slip faults with reverse component and reverse faults. Reverse faults striking N55°-85°E and dip of 40°-50° to the SW while strike-slip faults show right lateral slip with N60°-85°W and N60°-80°E directions. Our structural data analysis in NBFZ indicates that the axis direction of σ2 principal stress is vertical and the stress ratio (R) is 0.12. These results suggest that the tectonic regime along the North Bozgush Fault Zone is transpressive. Obtained other principal stresses (σ1, σ3) results are compatible with stress directions and GPS velocity suggested for NW Iran.

  6. Modeling Water Flux at the Base of the Rooting Zone for Soils with Varying Glacial Parent Materials

    NASA Astrophysics Data System (ADS)

    Naylor, S.; Ellett, K. M.; Ficklin, D. L.; Olyphant, G. A.

    2013-12-01

    Soils of varying glacial parent materials in the Great Lakes Region (USA) are characterized by thin unsaturated zones and widespread use of agricultural pesticides and nutrients that affect shallow groundwater. To better our understanding of the fate and transport of contaminants, improved models of water fluxes through the vadose zones of various hydrogeologic settings are warranted. Furthermore, calibrated unsaturated zone models can be coupled with watershed models, providing a means for predicting the impact of varying climate scenarios on agriculture in the region. To address these issues, a network of monitoring sites was developed in Indiana that provides continuous measurements of precipitation, potential evapotranspiration (PET), soil volumetric water content (VWC), and soil matric potential to parameterize and calibrate models. Flux at the base of the root zone is simulated using two models of varying complexity: 1) the HYDRUS model, which numerically solves the Richards equation, and 2) the soil-water-balance (SWB) model, which assumes vertical flow under a unit gradient with infiltration and evapotranspiration treated as separate, sequential processes. Soil hydraulic parameters are determined based on laboratory data, a pedo-transfer function (ROSETTA), field measurements (Guelph permeameter), and parameter optimization. Groundwater elevation data are available at three of six sites to establish the base of the unsaturated zone model domain. Initial modeling focused on the groundwater recharge season (Nov-Feb) when PET is limited and much of the annual vertical flux occurs. HYDRUS results indicate that base of root zone fluxes at a site underlain by glacial ice-contact parent materials are 48% of recharge season precipitation (VWC RMSE=8.2%), while SWB results indicate that fluxes are 43% (VWC RMSE=3.7%). Due in part to variations in surface boundary conditions, more variable fluxes were obtained for a site underlain by alluvium with the SWB model (68

  7. Antistress activity of Argyreia speciosa roots in experimental animals

    PubMed Central

    Patel, Nikunj B.; Galani, Varsha J.; Patel, Bharatkumar G.

    2011-01-01

    The antistress effect of a seven-day treatment (100 and 200 mg / kg, p.o.) of the hydroalcoholic extract of Argyreia speciosa root (ASE) was evaluated by using the swimming endurance test, acetic acid–induced writhing test, pentylenetetrazole-induced convulsion test, anoxic tolerance test, cold-restraint, stress-induced gastric ulcers, aspirin-induced ulcers, and biochemical, and histopathological changes in the cold-restraint stress test. The immunomodulatory activity was also evaluated for the same doses, and treatment of ASE was done using the hemagglutination test. Both the doses of ASE showed antistress activity in all the tested models. The ASE-treated animals showed a decrease in immobility time and an increase in anoxic tolerance time in swimming endurance and the anoxic tolerance tests, respectively. The effect of glacial acetic acid and pentylenetetrazole were also reduced by decreasing the number of writhing responses and increasing the onset of convulsions, respectively. In the cold restrained stress and aspirin-induced gastric ulcer models, ASE showed a significant reduction in the ulcer index. Pretreatment with ASE significantly ameliorated the cold stress-induced variations in biochemical levels such as increased plasma cholesterol, triglyceride, glucose, total protein, and cortisol. ASE was also effective in preventing the pathological changes in the adrenal gland, due to cold restrained stress, in rats. In mice immunized with sheep red blood cells, the treatment groups subjected to restraint stress prevented the humoral immune response to the antigen. The immunostimulating activity of the ASE was indicated by an increase in the antibody titer in mice pre-immunized with sheep red blood cells and subjected to restraint stress. The findings of the present investigations indicate that the ASE has significant antistress activity, which may be due to the immunostimulating property and increased resistance, nonspecifically, against all experimental

  8. Chitinase activities, scab resistance, mycorrhization rates and biomass of own-rooted and grafted transgenic apple

    PubMed Central

    Schäfer, Tina; Hanke, Magda-Viola; Flachowsky, Henryk; König, Stephan; Peil, Andreas; Kaldorf, Michael; Polle, Andrea; Buscot, François

    2012-01-01

    This study investigated the impact of constitutively expressed Trichoderma atroviride genes encoding exochitinase nag70 or endochitinase ech42 in transgenic lines of the apple cultivar Pinova on the symbiosis with arbuscular mycorrhizal fungi (AMF). We compared the exo- and endochitinase activities of leaves and roots from non-transgenic Pinova and the transgenic lines T386 and T389. Local and systemic effects were examined using own-rooted trees and trees grafted onto rootstock M9. Scab susceptibility was also assessed in own-rooted and grafted trees. AMF root colonization was assessed microscopically in the roots of apple trees cultivated in pots with artificial substrate and inoculated with the AMF Glomus intraradices and Glomus mosseae. Own-rooted transgenic lines had significantly higher chitinase activities in their leaves and roots compared to non-transgenic Pinova. Both of the own-rooted transgenic lines showed significantly fewer symptoms of scab infection as well as significantly lower root colonization by AMF. Biomass production was significantly reduced in both own-rooted transgenic lines. Rootstock M9 influenced chitinase activities in the leaves of grafted scions. When grafted onto M9, the leaf chitinase activities of non-transgenic Pinova (M9/Pinova) and transgenic lines (M9/T386 and M9/T389) were not as different as when grown on their own roots. M9/T386 and M9/T389 were only temporarily less infected by scab than M9/Pinova. M9/T386 and M9/T389 did not differ significantly from M9/Pinova in their root chitinase activities, AMF root colonization and biomass. PMID:22888297

  9. Tests of the pesticide root zone model and the aggregate model for transport and transformation of aldicarb, metolachlor, and bromide

    SciTech Connect

    Parrish, R.S.; Smith, C.N.; Fong, F.K.

    1992-01-01

    Mathematical models are widely used to predict leaching of pesticides and nutrients in agricultural systems. The work was conducted to investigate the predictive capability of the Pesticide Root Zone Model (PRZM) and the Aggregate Model (AGGR) for the pesticides aldicarb (2-methyl-2-(methylthio)propionaldehyde-O-(methyl-carbamoyl)oxime), metolachlor (2-chloro-N-(2-ethyl-6-methylphenyl)-N-(2-methoxy-1-methylethyl)acetamide) and for a bromide tracer. Model predictions were compared with data collected from 1984 to 1987 in the Dougherty Plain area of southwestern Georgia. Field data were used to estimate mean concentrations of pesticide and bromide residues in the soil profile on various dates after application in each of four growing seasons. Both models tended to predict rates of movement of bromide tracer compounds in excess of that observed. For metolachlor, a pesticide with a soprption-partition coefficient that is higher than for other compounds in the study, both models provided reasonably accurate predictions within the upper 30-cm zone. For the pesticide aldicarb, results were more variable.

  10. Modelling orange tree root water uptake active area by minimally invasive ERT data and transpiration measurements

    NASA Astrophysics Data System (ADS)

    Vanella, Daniela; Boaga, Jacopo; Perri, Maria Teresa; Consoli, Simona; Cassiani, Giorgio

    2015-04-01

    The comprehension of the hydrological processes involving plant root dynamics is crucial for implementing water saving measures in agriculture. This is particular urgent in areas, like those Mediterranean, characterized by scarce water availability. The study of root water dynamics should not be separated from a more general analysis of the mass and energy fluxes transferred in the soil-plant-atmosphere continuum. In our study, in order to carry this inclusive approach, minimal invasive 3D time-lapse electrical resistivity tomography (ERT) for soil moisture estimation was combined with plant transpiration fluxes directly measured with Sap Flow (SF) techniques and Eddy Covariance methods, and volumetric soil moisture measurements by TDR probes. The main objective of this inclusive approach was to accurately define root-zone water dynamics and individuate the root-area effectively active for water and nutrient uptake process. The monitoring was carried out in Eastern Sicily (south Italy) in summers 2013 and 2014, within an experimental orange orchard farm. During the first year of experiment (October 2013), ERT measurements were carried out around the pertinent volume of one fully irrigated tree, characterized by a vegetation ground cover of 70%; in the second year (June 2014), ERT monitoring was conducted considering a cutting plant, thus to evaluate soil water dynamics without the significant plant transpiration contribution. In order to explore the hydrological dynamics of the root zone volume surrounded by the monitored tree, the resistivity data acquired during the ERT monitoring were converted into soil moisture content distribution by a laboratory calibration based on the soil electrical properties as a function of moisture content and pore water electrical conductivity. By using ERT data in conjunction with the agro-meteorological information (i.e. irrigation rates, rainfall, evapotranspiration by Eddy Covariance, transpiration by Sap Flow and soil moisture

  11. 78 FR 4155 - Agency Information Collection Activities: Application for Foreign Trade Zone and/or Status...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-18

    ... Foreign Trade Zone and/or Status Designation, and Application for Foreign Trade Zone Activity Permit... Application for Foreign Trade Zone Admission and/or Status Designation, and Application for Foreign Trade Zone... Foreign Trade Zone Admission and/or Status Designation, and Application for Foreign Trade......

  12. [Saponins from roots of Securidaca inappendiculata with cytotoxic activities].

    PubMed

    Zha, Hai-yan; Yang, Xue-dong; Zhang, Li-jie; Jin, Da-qing; Wang, Zhi; Xu, Li-zhen; Yang, Shi-lin

    2015-07-01

    Seven acylated triterpene saponins were isolated from the roots of Securidaca inappendiculata by means of various chromatographic techniques such as silica gel, MPLC, preparative HPLC, and semi-preparative HPLC. Their chemical structures were identified as securioside A(1), securioside B(2), 3-O-β-D-glucopyranosyl presenegenin 28-O-β-D-xylopyranosyl-(1-->4)-α-L-rhamnopyranosyl-(1-->2)-[β-D-glucopyranosyl-(1-->3)]-4-O-[(E)-3,4-dimethoxycinnamoyl]-β-D-fucopyranosyl ester(3), 3-O-β-D-glucopyranosyl presenegenin 28-O-β-D-xylopyranosyl-(1-->4)-α-L-rhamnopyranosyl-(1-->2)-[β-D-glucopyranosyl-(1-->3) ] -4-O-[(E/Z)-3, 4-dimethoxycinnamoyl]-β-D-fucopyranosyl ester(3/4), 3-O-β-D-glucopyranosyl presenegenin 28-O-α-L-arabinopyranosyl-(1-->3)-β-D-xylopyranosyl-(1-->4)-α-L-rhamnopyranosyl-(1-->2)-4-O-[(E)-3,4-dimethoxycinnamoyl]-β-D-fucopyranosyl ester(5), polygalasa- ponin XLV(6), and polygalasaponin XLVI (7) on the basis of spectroscopic data analysis and physicochemical properties. Among them, compounds 5-7 were isolated from the plants in genus Securidaca for the first time and compounds 3, 3/4 were isolated from the species for the first time. The cytotoxicity assay showed that compounds 2, 3/4, 5 have moderate cytotoxic activities against Lewis lung carcinoma LLC cells with IC50 values of 41.10, 38.17, and 48.92 µmol · L(-1), respectively; compound 2 exhibited moderate cytotoxic activities against human breast cancer MCF-7 cells with an IC50 value of 47.93 µmol · L(-1). PMID:26666038

  13. The influence of the root zone temperatures on the phytoextraction of boron and aluminium with potato plants growing in the field.

    PubMed

    Baghour, Mourad; Moreno, Diego A; Villora, Gemme; Hernández, Joaquin; Castilla, Nicolas; Romero, Luis

    2002-01-01

    The effect of different root zone temperatures on the concentration and content of B and Al in potato plants was examined using four different treatments of plastic mulches: T1: transparent polyethylene; T2: white polyethylene; T3: coextruded black and white polyethylene; T4: black polyethylene. An open-air treatment (T0) was used as control. The results showed significantly positive effects of the plastic covers on the root-zone temperatures: T0 = 16 degrees C, T1 = 20 degrees C, T2 = 23 degrees C, T3 = 27 degrees C, T4 = 30 degrees C. These different soil temperature conditions significantly altered the B concentrations, with T3 promoting the greatest concentrations and phytoaccumulation. The root zone temperature treatments induced higher concentrations and accumulation of Al in the T2 and T3 treatments in the roots, tubers, and leaves. The T2 and T3 lead to high levels of pectins in the roots, tubers, and leaves. This appears to reflect a possible mechanism of tolerance to the high Al and B concentrations in the analysed organs. PMID:12049127

  14. Calibration and validation of a modified steady-state model of crop response to saline water irrigation under conditions of transient root zone salinity

    NASA Astrophysics Data System (ADS)

    Vinten, A. J. A.; Frenkel, H.; Shalhevet, J.; Elston, D. A.

    1991-01-01

    In many situations where annual crops are irrigated with saline water, root zone salinity does not reach a steady state. Use of a steady-state description of root zone salinity may then seriously overestimate the calculated leaching requirements of the crop. A steady-state semi-emphirical model of crop response to irrigation with saline water has been calibrated using data from a number of field experiments. Predictions of yield deficit resulting from irrigation with saline water have been made for each of these experiments, using both the original model and a modified version which allows for the non-steady-state salinity conditions occurring in the experiments. Comparison with experimental data shows a clear superiority of the modified version in most cases studied. Where the original model is superior or equally good, it is likely that steady-state conditions are being approached. Where root zone salinity data were available and applicable, the modified model predicted root zone salinity much better. Approaches for distinguishing errors in calibration from intrinsic errors in the model assumptions are discussed.

  15. PRZM-3, A MODEL FOR PREDICTING PESTICIDE AND NITROGEN FATE IN THE CROP ROOT AND UNSATURATED SOIL ZONES: USER'S MANUAL FOR RELEASE 3.12.2

    EPA Science Inventory

    This publication contains documentation for the PRZM-3 model. PRZM-3 is the most recent version of a modeling system that links two subordinate models, PRZM and VADOFT, in order to predict pesticide transport and transformation down through the crop root and unsaturated soil zone...

  16. Evaluating the impact of groundwater on cotton growth and root zone water balance using Hydrus-ID coupled with a crop growth model

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Groundwater is an important factor that needs to be considered when evaluating the water balance of the soil-plant-atmosphere system and the sustainable water management. However, the impact of shallow groundwater on the root zone water balance and cotton growth is not fully understood. In this stud...

  17. Effects of simulated soil temperature on stem diameter increment of Pinus cembra at the alpine timberline: a new approach based on root zone roofing

    PubMed Central

    Gruber, A.; Wieser, G.; Oberhuber, W.

    2011-01-01

    For assessing the impact of soil temperature on tree growth in remote areas such as the alpine timberline we introduce a new method for soil temperature manipulations. This new approach is based on roofing of the rooting zone and allows either soil cooling or soil warming without significantly influencing soil water availability and the above ground microclimate. PMID:21423859

  18. Documentation of Computer Program INFIL3.0 - A Distributed-Parameter Watershed Model to Estimate Net Infiltration Below the Root Zone

    USGS Publications Warehouse

    U.S. Geological Survey

    2008-01-01

    This report documents the computer program INFIL3.0, which is a grid-based, distributed-parameter, deterministic water-balance watershed model that calculates the temporal and spatial distribution of daily net infiltration of water across the lower boundary of the root zone. The bottom of the root zone is the estimated maximum depth below ground surface affected by evapotranspiration. In many field applications, net infiltration below the bottom of the root zone can be assumed to equal net recharge to an underlying water-table aquifer. The daily water balance simulated by INFIL3.0 includes precipitation as either rain or snow; snowfall accumulation, sublimation, and snowmelt; infiltration into the root zone; evapotranspiration from the root zone; drainage and water-content redistribution within the root-zone profile; surface-water runoff from, and run-on to, adjacent grid cells; and net infiltration across the bottom of the root zone. The water-balance model uses daily climate records of precipitation and air temperature and a spatially distributed representation of drainage-basin characteristics defined by topography, geology, soils, and vegetation to simulate daily net infiltration at all locations, including stream channels with intermittent streamflow in response to runoff from rain and snowmelt. The model does not simulate streamflow originating as ground-water discharge. Drainage-basin characteristics are represented in the model by a set of spatially distributed input variables uniquely assigned to each grid cell of a model grid. The report provides a description of the conceptual model of net infiltration on which the INFIL3.0 computer code is based and a detailed discussion of the methods by which INFIL3.0 simulates the net-infiltration process. The report also includes instructions for preparing input files necessary for an INFIL3.0 simulation, a description of the output files that are created as part of an INFIL3.0 simulation, and a sample problem that

  19. The SMAP Level 4 surface and root-zone soil moisture product

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Slated for launch in 2015, the NASA Soil Moisture Active/Passive mission represents a generational advance in our ability to globally observe time and space variations in surface soil moisture fields. The SMAP mission concept is based on the integrated use of L-band active radar and passive radiome...

  20. Neurotransmitters couple brain activity to subventricular zone neurogenesis

    PubMed Central

    Young, Stephanie Z.; Taylor, M. Morgan; Bordey, Angélique

    2011-01-01

    Adult neurogenesis occurs in two privileged microenvironments, the hippocampal subgranular zone of the dentate gyrus and the subventricular zone (SVZ) along the lateral ventricle. This review focuses on accumulating evidence suggesting that the activity of specific brain regions or bodily states influences SVZ cell proliferation and neurogenesis. Neuromodulators such as dopamine and serotonin have been shown to have long-range effects through neuronal projections into the SVZ. Local GABA and glutamate signaling have demonstrated effects on SVZ proliferation and neurogenesis, but an extra-niche source of these neurotransmitters remains to be explored and options will be discussed. There is also accumulating evidence that diseases and bodily states such as Alzheimer's disease, seizures, sleep, and pregnancy influence SVZ cell proliferation. With such complex behavior and environmentally-driven factors that control subregion-specific activity, it will become necessary to account for overlapping roles of multiple neurotransmitter systems on neurogenesis when developing cell therapies or drug treatments. PMID:21395856

  1. The Interfacial Transition Zone in Alkali-Activated Slag Mortars

    NASA Astrophysics Data System (ADS)

    San Nicolas, Rackel; Provis, John

    2015-12-01

    The interfacial transition zone (ITZ) is known to strongly influence the mechanical and transport properties of mortars and concretes. This paper studies the ITZ between siliceous (quartz) aggregates and alkali activated slag binders in the context of mortar specimens. Backscattered electron images (BSE) generated in an environmental scanning electron microscope (ESEM) are used to identify unreacted binder components, reaction products and porosity in the zone surrounding aggregate particles, by composition and density contrast. X-ray mapping is used to exclude the regions corresponding to the aggregates from the BSE image of the ITZ, thus enabling analysis of only the binder phases, which are segmented into binary images by grey level discrimination. A distinct yet dense ITZ region is present in the alkali-activated slag mortars, containing a reduced content of unreacted slag particles compared to the bulk binder. The elemental analysis of this region shows that it contains a (C,N)-A-S-H gel which seems to have a higher content of Na (potentially deposited through desiccation of the pore solution) and a lower content of Ca than the bulk inner and outer products forming in the main binding region. These differences are potentially important in terms of long-term concrete performance, as the absence of a highly porous interfacial transition zone region is expected to provide a positive influence on the mechanical and transport properties of alkali-activated slag concretes.

  2. 78 FR 16701 - Agency Information Collection Activities: Application for Foreign Trade Zone and/or Status...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-18

    ... Foreign Trade Zone and/or Status Designation, and Application for Foreign Trade Zone Activity Permit... approval in accordance with the Paperwork Reduction Act: Application for Foreign Trade Zone Admission and/or Status Designation, and Application for Foreign Trade Zone Activity Permit (CBP Forms 214,...

  3. Root gravitropism

    NASA Technical Reports Server (NTRS)

    Masson, P. H.

    1995-01-01

    When a plant root is reoriented within the gravity field, it responds by initiating a curvature which eventually results in vertical growth. Gravity sensing occurs primarily in the root tip. It may involve amyloplast sedimentation in the columella cells of the root cap, or the detection of forces exerted by the mass of the protoplast on opposite sides of its cell wall. Gravisensing activates a signal transduction cascade which results in the asymmetric redistribution of auxin and apoplastic Ca2+ across the root tip, with accumulation at the bottom side. The resulting lateral asymmetry in Ca2+ and auxin concentration is probably transmitted to the elongation zone where differential cellular elongation occurs until the tip resumes vertical growth. The Cholodny-Went theory proposes that gravity-induced auxin redistribution across a gravistimulated plant organ is responsible for the gravitropic response. However, recent data indicate that the gravity-induced reorientation is more complex, involving both auxin gradient-dependent and auxin gradient-independent events.

  4. Can we use Electrical Resistivity Tomography to measure root zone moisture dynamics in fields with multiple crops?

    NASA Astrophysics Data System (ADS)

    Garre, S.; Coteur, I.; Wongleecharoen, C.; Diels, J.; Vanderborght, J.

    2012-12-01

    Agriculture on shallow or steep soils in the humid tropics often leads to low resource use efficiency. Contour hedgerow intercropping systems have been proposed to reduce run-off and control soil erosion. However, competition for water and nutrients between crops and associated hedgerows may reduce the overall performance of contour hedgerow systems. Electrical resistivity tomography (ERT) is a valuable technique to assess the distribution and dynamics of soil moisture non-invasively. Root water uptake is a spatially variable and small-scale process, which requires at least decimeter resolution and a high sensitivity in order to be able to monitor changes in time and space. Careful experimental design is of uttermost importance in order to maximize the information content of the ERT survey and to gain insights in the possibilities and limitations of the survey. Virtual experiments in combination with absolute and spatial performance measures provide a way to optimize the information that can be retrieved from an ERT experiment. We used this approach to identify a suitable measurement methodology to monitor water fluxes in a contour hedgerow intercropping system in Ratchaburi province, Thailand. The virtual experiment showed that there are important differences between the tested measurement configurations. We saw that the optimal ERT array was capable of recognizing distinct water depletion zones under the different crops. However, sharp contrasts in the 1-D water depletion profile are smoothened. ERT measurements conducted in Thailand showed that the soils of our experimental plots were very heterogeneous both along the slope as with depth. This observation highlighted some constraints of the ERT method for soil moisture monitoring in the field, such as the difficulty to define a relationship between electrical conductivity and soil moisture in very heterogeneous soils. Nevertheless, the data indeed revealed contrasting water depletion patterns under monocropping

  5. The SMAP level 4 surface and root zone soil moisture data assimilation product

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The NASA Soil Moisture Active Passive (SMAP) mission is scheduled for launch in January 2015 and will provide L-band radar and radiometer observations that are sensitive to surface soil moisture (in the top few centimeters of the soil column). For several of the key applications targeted by SMAP, ho...

  6. Characterization of nutrient transport below the root zone of a willow plantation irrigated with municipal waste water in the Boreal-Parkland transition zone, Alberta, Canada

    NASA Astrophysics Data System (ADS)

    Gainer, A. E.; Dyck, M. F.; Kachanoski, G.

    2010-12-01

    Irrigation of willow and poplar species with municipal waste water offers municipalities a variety of opportunities including reduced energy and waste management costs and preservation of surface water quality. Municipal waste water contains various nutrients that are beneficial to plants such as nitrogen and phosphorus. The woody species reduce treatment costs by further removing many of these nutrients and potentially using the resulting biomass to fuel the facilities. Diversion of municipal waste water from rivers and water bodies improves water quality by reducing the amount of nutrients entering water bodies, decreasing pollution such as eutrophication. As found by many European countries, the bioenergy combined with waste water treatment approach is promising but there are environmental drawbacks including nutrient leaching to groundwater and degradation to soil hydraulic properties. Various nitrogen forms like nitrate are of concern due to impacts on human and environmental health, most notably methemoglobinemia in infants. The overall objective of this research is to assess ecosystem resilience and sustainability with repeated applications of municipal wastewater over the life cycle of a willow plantation. The specific objective of this presentation is to quantify nutrient transport below the root zone of a poplar plantation previously irrigated with municipal waste water under natural climatic conditions using soil solution samplers at 4 depths (50 cm, 90 cm, 120 cm and 150 cm). Meteorological data (precipitation, temperature, evaporimeter) was collected as well. Transport of conservative tracers, bromide and chloride, are compared to the transport of nutrients (nitrogen forms and DOC,). Parameterization of the measured breakthrough curves may be used to predict future nutrient fluxes. The goal of this research is to improve the design of municipal waste water subsurface irrigation systems by minimizing leaching and water losses.

  7. Linking Plagioclase Zoning Patterns to Active Magma Processes

    NASA Astrophysics Data System (ADS)

    Izbekov, P. E.; Nicolaysen, K. P.; Neill, O. K.; Shcherbakov, V.; Plechov, P.; Eichelberger, J. C.

    2015-12-01

    Plagioclase, one of the most common and abundant mineral phases in volcanic products, will vary in composition in response to changes in temperature, pressure, composition of the ambient silicate melt, and melt H2O concentration. Changes in these parameters may cause dissolution or growth of plagioclase crystals, forming characteristic textural and compositional variations (zoning patterns), the complete core-to-rim sequence of which describes events experienced by an individual crystal from its nucleation to the last moments of its growth. Plagioclase crystals in a typical volcanic rock may look drastically dissimilar despite their spatial proximity and the fact that they have erupted together. Although they shared last moments of their growth during magma ascent and eruption, their prior experiences could be very different, as plagioclase crystals often come from different domains of the same magma system. Distinguishing similar zoning patterns, correlating them across the entire population of plagioclase crystals, and linking these patterns to specific perturbations in the magmatic system may provide additional perspective on the variety, extent, and timing of magma processes at active volcanic systems. Examples of magma processes, which may be distinguished based on plagioclase zoning patterns, include (1) cooling due to heat loss, (2) heating and/or pressure build up due to an input of new magmatic material, (3) pressure drop in response to magma system depressurization, and (4) crystal transfer between different magma domains/bodies. This review will include contrasting examples of zoning patters from recent eruptions of Karymsky, Bezymianny, and Tolbachik Volcanoes in Kamchatka, Augustine and Cleveland Volcanoes in Alaska, as well as from the drilling into an active magma body at Krafla, Iceland.

  8. Effect of water and nitrogen additions on free-living nitrogen fixer populations in desert grass root zones.

    PubMed Central

    Herman, R P; Provencio, K R; Torrez, R J; Seager, G M

    1993-01-01

    In this study we measured changes in population levels of free-living N2-fixing bacteria in the root zones of potted Bouteloua eriopoda and Sporobolus flexuosus plants as well as the photosynthetic indices of the plants in response to added nitrogen, added water, and added water plus nitrogen treatments. In addition, N2 fixer population changes in response to added carbon source and nitrogen were measured in plant-free soil columns. There were significant increases in the numbers of N2 fixers associated with both plant species in the water and the water plus nitrogen treatments. Both treatments increased the photosynthetic index, suggesting that plant exudates were driving N2 fixer population changes. Population increases were greatest in the water plus nitrogen treatments, indicating that added nitrogen was synergistic with added water and suggesting that nitrogen addition spared bacteria the metabolic cost of N2 fixation, allowing greater reproduction. Plant-free column studies demonstrated a synergistic carbon-nitrogen effect when carbon levels were limiting (low malate addition) but not when carbon was abundant (high malate), further supporting this hypothesis. The results of this study indicate the presence of N2 fixer populations which interact with plants and which may play a role in the nitrogen balance of desert grasslands. PMID:8215373

  9. Microsurgical procedures in the peripheral nerves and the dorsal root entry zone for the treatment of spasticity.

    PubMed

    Sindou, M; Keravel, Y

    1988-01-01

    When spasticity becomes severe and harmful, in spite of physical and medical therapy, neurosurgery can give functional improvement. This paper deals with the long term results of Selective Peripheral Neurotomies of the Tibial Nerve and Selective Posterior Rhizotomies in the Dorsal Root Entry Zone, in 123 patients with spastic disorders localized to the limbs. The micro-techniques and intra-operative electro-stimulation for identification of the nervous structures responsible for the spastic components, can give a substantial reduction of the harmful spasticity, without suppressing the useful muscle tone and impairing the residual motor and sensory functions. The results were effective, with a 1 to 13 year follow-up (5 on average), in 89% of 47 Selective Peripheral Neurotomies of the tibial nerve for spastic foot, in 92% of 53 Selective Posterior Rhizotomies for paraplegia and in 87% of 23 Selective Posterior Rhizotomies for hemiplegia. In the most severe situations ("comfort" indications), correction of the abnormal postures and relief of pain facilitated nursing and physiotherapy. Sometimes there was reappearance of some useful voluntary movements. In the less affected patients ("functional" indications), the suppression of the harmful spastic components made the persistant capacities more effective. PMID:3165206

  10. A root zone model for estimating soil water balance and crop yield responses to deficit irrigation in the North China Plain

    NASA Astrophysics Data System (ADS)

    Ma, Y.; Song, X.; Feng, S.

    2012-12-01

    This study proposed a new soil water balance model by quantifying drainage out of the root zone with the simplification of the Darcy's law, which combined the advantages of conceptual and physically based models. This model was connected with the Jensen crop water production function to simulate soil water components and relative crop yield. Field experiments with the winter wheat-summer corn cropping system were conducted in Beijing area in the North China Plain (2007-2009) to evaluate the model. The model could give quite reasonable predictions of soil water content in the root zone with the average root mean square error (RMSE), mean relative error (RE) and model efficiency (EF) of 0.02 cm3/cm3, 6.69% and 0.78, respectively. Furthermore, the predicted soil water flux through the bottom of root zone agreed well with the measured ones supported by the values of RMSE (0.10 mm/d) and EF (0.92). The Jensen crop water production function with the calculated actual evapotranspitation from the soil water balance model could satisfactorily evaluate crop yield response to deficit irrigation with the EF values greater than 0.95 and the RE values lower than 6%. As an application, the model was used to obtain the optimal irrigation management schedules for the hydrologic years of 75%, 50% and 25% in the study area. The average amount of irrigation saving and reduction of water losses through drainage under optimal irrigation alternative were about 175 mm and 101.9 mm, respectively. This study indicates that the developed root zone model is more available for agricultural water management as it has minimal input requirement, robust physical meaning and satisfactory simulation performance.

  11. Translaminar Microendoscopic Herniotomy for Cranially Migrated Lumbar Disc Herniations Encroaching on the Exiting Nerve Root in the Preforaminal and Foraminal Zones

    PubMed Central

    Tono, Osamu; Senba, Hideyuki; Kitamura, Takahiro; Komiya, Norihiro; Oga, Masayoshi; Shidahara, Satoshi

    2013-01-01

    Study Design Case series. Purpose The aim of this study was to describe translaminar microendoscopic herniotomy (TL-MEH) for cranially migrated lumbar disc herniations encroaching on the exiting nerve root in the preforaminal and foraminal zones and to report preliminary results of the procedure. Overview of Literature Conventional interlaminar approaches for preforaminal and foraminal lumbar disc herniations result in extensive removal of the lamina and facet joint to remove disc fragments safely. More destructive approaches increase the risk of postoperative segmental instability. Methods TL-MEH is a minimally invasive procedure for herniotomy via the translaminar approach using a microendoscopic technique. TL-MEH was performed in seven patients with a cranially migrated lumbar disc herniation encroaching on the exiting nerve root. The disc fragments were located in the preforaminal zone in four patients, and in the preforaminal and foraminal zones in three. Results All patients experienced immediate relief from symptoms after surgery and satisfactory results at the final follow-up. Surgical complications, such as a dural tear, nerve injury, and surgical site infection, were not investigated. Conclusions TL-MEH seemed to be an effective and safe alternative minimally invasive surgical option for patients with a cranially migrated lumbar disc herniation encroaching the exiting nerve root in the preforaminal and foraminal zones. PMID:24066214

  12. Measurement of Differential Na+ Efflux from Apical and Bulk Root Zones of Intact Barley and Arabidopsis Plants

    PubMed Central

    Hamam, Ahmed M.; Britto, Dev T.; Flam-Shepherd, Rubens; Kronzucker, Herbert J.

    2016-01-01

    Rapid sodium cycling across the plasma membrane of root cells is widely thought to be associated with Na+ toxicity in plants. However, the efflux component of this cycling is not well understood. Efflux of Na+ from root cells is believed to be mediated by Salt Overly-Sensitive-1, although expression of this Na+/H+ antiporter has been localized to the vascular tissue and root meristem. Here, we used a chambered cuvette system in which the distal root of intact salinized barley and Arabidopsis thaliana plants (wild-type and sos1) were isolated from the bulk of the root by a silicone-acrylic barrier, so that we could compare patterns of 24Na+ efflux in these two regions of root. In barley, steady-state release of 24Na+ was about four times higher from the distal root than from the bulk roots. In the distal root, 24Na+ release was pronouncedly decreased by elevated pH (9.2), while the bulk-root release was not significantly affected. In A. thaliana, tracer efflux was about three times higher from the wild-type distal root than from the wild-type bulk root and also three to four times higher than both distal- and bulk-root fluxes of Atsos1 mutants. Elevated pH also greatly reduced the efflux from wild-type roots. These findings support a significant role of SOS1-mediated Na+ efflux in the distal root, but not in the bulk root. PMID:27014297

  13. Simultaneous monitoring of electrical capacitance and water uptake activity of plant root system

    NASA Astrophysics Data System (ADS)

    Cseresnyés, Imre; Takács, Tünde; Füzy, Anna; Rajkai, Kálmán

    2014-10-01

    Pot experiments were designed to test the applicability of root electrical capacitance measurement for in situ monitoring of root water uptake activity by growing cucumber and bean cultivars in a growth chamber. Half of the plants were inoculated with Funneliformis mosseae arbuscular mycorrhizal fungi, while the other half served as non-infected controls. Root electrical capacitance and daily transpiration were monitored during the whole plant ontogeny. Phenology-dependent changes of daily transpiration (related to root water uptake) and root electrical capacitance proved to be similar as they showed upward trends from seedling emergence to the beginning of flowering stage, and thereafter decreased continuously during fruit setting. A few days after arbuscular mycorrhizal fungi-colonization, daily transpiration and root electrical capacitance of infected plants became significantly higher than those of non-infected counterparts, and the relative increment of the measured parameters was greater for the more highly mycorrhizal-dependent bean cultivar compared to that of cucumber. Arbuscular mycorrhizal fungi colonization caused 29 and 69% relative increment in shoot dry mass for cucumbers and beans, respectively. Mycorrhization resulted in 37% increase in root dry mass for beans, but no significant difference was observed for cucumbers. Results indicate the potential of root electrical capacitance measurements for monitoring the changes and differences of root water uptake rate.

  14. 50 CFR Table 8 to Part 679 - Harvest Zone Codes for Use With Vessel Activity Reports

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Harvest Zone Codes for Use With Vessel... ECONOMIC ZONE OFF ALASKA Pt. 679, Table 8 Table 8 to Part 679—Harvest Zone Codes for Use With Vessel Activity Reports Harvest Zone Description A1 BSAI EEZ off Alaska A2 GOA EEZ off Alaska B State waters...

  15. Spatial distribution of enzyme activities along the root and in the rhizosphere of different plants

    NASA Astrophysics Data System (ADS)

    Razavi, Bahar S.; Zarebanadkouki, Mohsen; Blagodatskaya, Evgenia; Kuzyakov, Yakov

    2015-04-01

    Extracellular enzymes are important for decomposition of many biological macromolecules abundant in soil such as cellulose, hemicelluloses and proteins. Activities of enzymes produced by both plant roots and microbes are the primary biological drivers of organic matter decomposition and nutrient cycling. So far acquisition of in situ data about local activity of different enzymes in soil has been challenged. That is why there is an urgent need in spatially explicit methods such as 2-D zymography to determine the variation of enzymes along the roots in different plants. Here, we developed further the zymography technique in order to quantitatively visualize the enzyme activities (Spohn and Kuzyakov, 2013), with a better spatial resolution We grew Maize (Zea mays L.) and Lentil (Lens culinaris) in rhizoboxes under optimum conditions for 21 days to study spatial distribution of enzyme activity in soil and along roots. We visualized the 2D distribution of the activity of three enzymes:β-glucosidase, leucine amino peptidase and phosphatase, using fluorogenically labelled substrates. Spatial resolution of fluorescent images was improved by direct application of a substrate saturated membrane to the soil-root system. The newly-developed direct zymography shows different pattern of spatial distribution of enzyme activity along roots and soil of different plants. We observed a uniform distribution of enzyme activities along the root system of Lentil. However, root system of Maize demonstrated inhomogeneity of enzyme activities. The apical part of an individual root (root tip) in maize showed the highest activity. The activity of all enzymes was the highest at vicinity of the roots and it decreased towards the bulk soil. Spatial patterns of enzyme activities as a function of distance from the root surface were enzyme specific, with highest extension for phosphatase. We conclude that improved zymography is promising in situ technique to analyze, visualize and quantify

  16. Correlation between calmodulin activity and gravitropic sensitivity in primary roots of maize

    NASA Technical Reports Server (NTRS)

    Stinemetz, C. L.; Kuzmanoff, K. M.; Evans, M. L.; Jarrett, H. W.

    1987-01-01

    Recent evidence indicates a role for calcium and calmodulin in the gravitropic response of primary roots of maize (Zea mays, L.). We examined this possibility by testing the relationship between calmodulin activity and gravitropic sensitivity in roots of the maize cultivars Merit and B73 x Missouri 17. Roots of the Merit cultivar require light to the gravitropically competent. The gravitropic response of the Missouri cultivar is independent of light. The occurrence of calmodulin in primary roots of these maize cultivars was tested by affinity gel chromatography followed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis with bovine brain calmodulin as standard. The distribution of calmodulin activity was measured using both the phosphodiesterase and NAD kinase assays for calmodulin. These assays were performed on whole tissue segments, crude extracts, and purified extracts. In light-grown seedlings of the Merit cultivar or in either dark- or light-grown seedlings of the Missouri cultivar, calmodulin activity per millimeter of root tissue was about 4-fold higher in the apical millimeter than in the subtending 3 millimeters. Calmodulin activity was very low in the apical millimeter of roots of dark-grown (gravitropically nonresponsive) seedlings of the Merit cultivar. Upon illumination, the calmodulin activity in the apical millimeter increased to a level comparable to that of light-grown seedlings and the roots became gravitropically competent. The time course of the development of gravitropic sensitivity following illumination paralleled the time course of the increase in calmodulin activity in the apical millimeter of the root. The results are consistent with the suggestion that calmodulin plays an important role in the gravitropic response of roots.

  17. Antidyslipidemic and Antioxidant Activities of Hibiscus rosa sinensis Root Extract in Alloxan Induced Diabetic Rats.

    PubMed

    Kumar, Vishnu; Mahdi, Farzana; Khanna, Ashok Kumar; Singh, Ranjana; Chander, Ramesh; Saxena, Jitendra Kumar; Mahdi, Abbas Ali; Singh, Raj Kumar

    2013-01-01

    The antidyslipidemic activity of Hibiscus rosa sinensis (Malvaceae) root extract has been studied in alloxan induced diabetic rats. In this model, oral administration of root extract (500 mg/kg bw. p.o.) for 15 days resulted in significant decreased in the levels of blood glucose, plasma lipids and reactivated post heparin lipoprotein lipase activity in alloxan induced diabetic rats. Furthermore, the root extract (50-500 μg) when tested for its antioxidant activity, inhibited the generation of super oxide anions and hydroxyl radicals, in both enzymic and non enzymic systems in vitro. The results of the present study demonstrated antidyslipidemic and antioxidant activities in root extract of H. rosa sinensis which could be used in prevention of diabetic-dyslipidemia and related complications. PMID:24381420

  18. Root Zone Soil Moisture (RZSM) Estimates Using VHF (240-270 MHZ) Antenna for SoOp (Signal of Opportunity) Receiver for 6U CubeSat Platforms

    NASA Astrophysics Data System (ADS)

    Joseph, A. T.

    2015-12-01

    The main goal of this research is to develop VHF antennas for 6U Cubesat platforms to enable validation of root zone soil moisture (RZSM) estimation algorithms for signal of opportunity (SoOp) remote sensing over the 240-270 MHz frequency band. This study provides a strong foundation for establishing a path for maturing truly global direct surface soil moisture (SM) and RZSM measurement system over a variety of land covers with limited density restrictions. In SoOp methodology, signals transmitted by already existing transmitters, in this case the Military Satellite Communication (MilSatCom) System's UHF Follow-On program, are utilized to measure properties of reflecting targets by recording reflected signals using a simple passive microwave receiver. We developed and will test VHF (240-270 MHz) antenna technology for SoOp receivers for 6U Cubesat platforms and perform measurement of SM and RZSM using the proposed antennas deployed on a ground-based Soil Moisture Active Passive (SMAP) simulator boom truck. We will validate the RZSM and SM estimation algorithms from measured data (where RZSM is defined as the volumetric SM contained in the top 1 m of the soil column). Knowledge of RZSM up to a depth of 1 m and surface SM up to a depth of 0.05 m on a global scale, at a spatial resolution of 1-10 km through moderate-to-heavy vegetation, is critical to understanding global water resources and the vertical moisture gradient in the Earth's surface layer which controls moisture interactions between the soil, vegetation, and atmosphere. Current observations of surface SM from space by L-band radiometers and radars are limited to measurements of surface SM up to a depth of ~0.05 m through moderate amounts of vegetation. Developing bi-static reflectometry using VHF geostationary satellite SoOp creates the potential of directly observing SM and RZSM on a truly global basis from a constellation of small satellite-based receivers in low earth orbit. The technique provides the

  19. Mycorrhiza-induced lower oxidative burst is related with higher antioxidant enzyme activities, net H2O2 effluxes, and Ca2+ influxes in trifoliate orange roots under drought stress.

    PubMed

    Zou, Ying-Ning; Huang, Yong-Ming; Wu, Qiang-Sheng; He, Xin-Hua

    2015-02-01

    Mechanisms of arbuscular mycorrhiza (AM)-induced lower oxidative burst of host plants under drought stress (DS) are not elucidated. A noninvasive microtest technology (NMT) was used to investigate the effects of Funneliformis mosseae on net fluxes of root hydrogen peroxide (H2O2) and calcium ions (Ca2+) in 5-month-old Poncirus trifoliata, in combination with catalase (CAT) and superoxide dismutase (SOD) activities as well as tissue superoxide radical (O2•-) and H2O2 concentrations under DS and well-watered (WW) conditions. A 2-month DS (55% maximum water holding capacity of growth substrates) significantly inhibited AM fungal root colonization, while AM symbiosis significantly increased plant biomass production, irrespective of water status. F. mosseae inoculation generally increased SOD and CAT activity but decreased O2•- and H2O2 concentrations in leaves and roots under WW and DS. Compared with non-AM seedlings, roots of AM seedlings had significantly higher net H2O2 effluxes and net Ca2+ influxes, especially in the meristem zone, but lower net H2O2 efflux in the elongation zone. Net Ca2+ influxes into roots were significantly positively correlated with root net H2O2 effluxes but negatively with root H2O2 concentrations. Results from this study suggest that AM-induced lower oxidative burst is related with higher antioxidant enzyme activities, root net H2O2 effluxes, and Ca2+ influxes under WW and DS. PMID:25085218

  20. Quantifying spatiotemporal dynamics of root-zone soil water in a mixed forest on subtropical coastal sand dune using surface ERT and spatial TDR

    NASA Astrophysics Data System (ADS)

    Fan, Junliang; Scheuermann, Alexander; Guyot, Adrien; Baumgartl, Thomas; Lockington, David A.

    2015-04-01

    We jointly used surface electrical resistivity tomography (surface ERT) and spatial time domain reflectometry (spatial TDR) to quantify spatial patterns and seasonal dynamics of root-zone soil water under three contrasting vegetation covers in a sand dune forest of subtropical coastal Australia. We wanted to obtain a better understanding of the applicability of both techniques in these environments as well as investigate vegetation-soil water interactions. Soil temperature and topographic changes were taken into account in soil resistivity interpretation. The results demonstrated the capability of both surface ERT and spatial TDR to spatially monitor root-zone soil water dynamics, with root mean square error (RMSE) <0.018 cm3 cm-3 and absolute deviation <0.034 cm3 cm-3 between gravimetrically derived water content and those derived by the two geophysical techniques. Soil water was depleted to low levels during the dry season but quickly replenished with onset of the wet season. Soil water content profiles revealed obvious differences in water dynamics of the dune sands under different vegetation covers, with highest infiltration and deep drainage under the grassland compared with tree cover. The spatial variation in soil water content due to rainfall interception by trees, root water uptake and preferential infiltration associated with stemflow could be detected by the joint use of surface ERT and spatial TDR. We conclude that surface ERT can be an effective method for quantifying two-dimensional root-zone soil water dynamics and understanding the hydrological processes in these sand dune environments, if complemented by the one-dimensional high-resolution soil water measurements from spatial TDR.

  1. Inference of the Arabidopsis Lateral Root Gene Regulatory Network Suggests a Bifurcation Mechanism That Defines Primordia Flanking and Central Zones[OPEN

    PubMed Central

    Lavenus, Julien; Goh, Tatsuaki; Guyomarc’h, Soazig; Hill, Kristine; Lucas, Mikael; Voß, Ute; Kenobi, Kim; Wilson, Michael H.; Farcot, Etienne; Hagen, Gretchen; Guilfoyle, Thomas J.; Fukaki, Hidehiro; Laplaze, Laurent; Bennett, Malcolm J.

    2015-01-01

    A large number of genes involved in lateral root (LR) organogenesis have been identified over the last decade using forward and reverse genetic approaches in Arabidopsis thaliana. Nevertheless, how these genes interact to form a LR regulatory network largely remains to be elucidated. In this study, we developed a time-delay correlation algorithm (TDCor) to infer the gene regulatory network (GRN) controlling LR primordium initiation and patterning in Arabidopsis from a time-series transcriptomic data set. The predicted network topology links the very early-activated genes involved in LR initiation to later expressed cell identity markers through a multistep genetic cascade exhibiting both positive and negative feedback loops. The predictions were tested for the key transcriptional regulator AUXIN RESPONSE FACTOR7 node, and over 70% of its targets were validated experimentally. Intriguingly, the predicted GRN revealed a mutual inhibition between the ARF7 and ARF5 modules that would control an early bifurcation between two cell fates. Analyses of the expression pattern of ARF7 and ARF5 targets suggest that this patterning mechanism controls flanking and central zone specification in Arabidopsis LR primordia. PMID:25944102

  2. Monitoring the Photosynthetic Apparatus During Space Flight: Interspecific Variation in Chlorophyll Fluorescence Signatures Induced by Different Root Zone Stresses

    NASA Technical Reports Server (NTRS)

    Bubenheim, David L.; Patterson, Mark T.; Kliss, Mark H. (Technical Monitor)

    1996-01-01

    Chlorophyll fluorescence has been used extensively as a tool to indicate stress to the photosynthetic apparatus in green plants. A rise in fluorescence has been attributed to the blockage of photosystem II photochemistry, and patterns of fluorescence decay (quenching) from dark adapted leaves can be related to specific photochemical and non-photochemical deexcitation pathways of light trapped by the photosynthetic apparatus and thus result in characteristically different fluorescence signatures. Four distantly related plant species, Hypocharis radicata (Asteraceae), Brassica rapa (Brassicaceae), Spinacea oleracea (Chenopodiaceae) and Triticum aestivum (Poaceae), were grown hydroponically for three weeks before the initiation of three different root zone stresses (10 mM Cu, 100 mM NaCl and nitrogen deficient nutrition). After 10 days, characteristic fluorescence signatures for each stress could be noted although the degree varied between species. Fast kinetics analysis showed a reduction in plastoquinone pool size for copper and nitrogen stress for all species but a more species specific result with NaCl stress. Photochemical quenching kinetics varied between species and stress treatments from no quenching in S. oleracea in copper treatments to increased photochemical quenching in NaCl treatments. Non-photochemical quenching kinetics demonstrated a distinct pattern between stresses for all species. Copper treatments characteristically exhibited a shallow, flat non-photochemical quenching profile suggesting a general blockage of electron transport whereas NaCl treatments exhibited a slow rising profile that suggested damage to thylakoid acidification kinetics and nitrogen deficiency exhibited a fast rising and declining profile that suggested an altered state 1-state 2 transition regulated by the phosphorylation of LHCII. These results demonstrate characteristic fluorescence signatures for specific plant stresses that may be applied to different, unrelated plant

  3. P-band Radar Retrieval of Root-Zone Soil Moisture: AirMOSS Methodology, Progress, and Improvements

    NASA Astrophysics Data System (ADS)

    Moghaddam, M.; Tabatabaeenejad, A.; Chen, R.

    2015-12-01

    The AirMOSS mission seeks to improve the estimates of the North American Net Ecosystem Exchange (NEE)by providing high-resolution observations of the root zone soil moisture (RZSM) over regions representative of themajor North American biomes. The radar snapshots are used to generate estimates of RZSM. To retrieve RZSM, weuse a discrete scattering model integrated with layered-soil scattering models. The soil moisture profile is representedas a quadratic function in the form of az2 + bz + c, where z is the depth and a, b, and c are the coefficients to beretrieved. The ancillary data necessary to characterize a pixel are available from various databases. We applythe retrieval method to the radar data acquired over AirMOSS sites including Canada's BERMS, Walnut Gulchin Arizona, MOISST in Oklahoma, Tonzi Ranch in California, and Metolius in Oregon, USA. The estimated soilmoisture profile is validated against in-situ soil moisture measurements. We have continued to improve the accuracyof retrievals as the delivery of the RZSMproducts has progressed since 2012. For example, the 'threshold depth' (thedepth up to which the retrieval is mathematically valid) has been reduced from 100 cm to 50 cm after the retrievalaccuracy was assessed both mathematically and physically. Moreover, we progressively change the implementationof the inversion code and its subroutines as we find more accurate and efficient ways of mathematical operations. Thelatest AirMOSS results (including soil moisture maps, validation plots, and scatter plots) as well as all improvementsapplied to the retrieval algorithm, including the one mentioned above, will be reported at the talk, following a briefdescription of the retrieval methodology. Fig. 1 shows a validation plot for a flight over Tonzi Ranch from September2014 (a) and a scatter plot for various threshold depths using 2012 and 2013 data.

  4. Application of glutathione to roots selectively inhibits cadmium transport from roots to shoots in oilseed rape

    PubMed Central

    Nakamura, Shin-ichi

    2013-01-01

    Glutathione is a tripeptide involved in various aspects of plant metabolism. This study investigated the effects of the reduced form of glutathione (GSH) applied to specific organs (source leaves, sink leaves, and roots) on cadmium (Cd) distribution and behaviour in the roots of oilseed rape plants (Brassica napus) cultured hydroponically. The translocation ratio of Cd from roots to shoots was significantly lower in plants that had root treatment of GSH than in control plants. GSH applied to roots reduced the Cd concentration in the symplast sap of root cells and inhibited root-to-shoot Cd translocation via xylem vessels significantly. GSH applied to roots also activated Cd efflux from root cells to the hydroponic solution. Inhibition of root-to-shoot translocation of Cd was visualized, and the activation of Cd efflux from root cells was also shown by using a positron-emitting tracer imaging system (PETIS). This study investigated a similar inhibitory effect on root-to-shoot translocation of Cd by the oxidized form of glutathione, GSSG. Inhibition of Cd accumulation by GSH was abolished by a low-temperature treatment. Root cells of plants exposed to GSH in the root zone had less Cd available for xylem loading by actively excluding Cd from the roots. Consequently, root-to-shoot translocation of Cd was suppressed and Cd accumulation in the shoot decreased. PMID:23364937

  5. PHABULOSA Controls the Quiescent Center-Independent Root Meristem Activities in Arabidopsis thaliana

    PubMed Central

    Sebastian, Jose; Ryu, Kook Hui; Zhou, Jing; Tarkowská, Danuše; Tarkowski, Petr; Cho, Young-Hee; Yoo, Sang-Dong; Kim, Eun-Sol; Lee, Ji-Young

    2015-01-01

    Plant growth depends on stem cell niches in meristems. In the root apical meristem, the quiescent center (QC) cells form a niche together with the surrounding stem cells. Stem cells produce daughter cells that are displaced into a transit-amplifying (TA) domain of the root meristem. TA cells divide several times to provide cells for growth. SHORTROOT (SHR) and SCARECROW (SCR) are key regulators of the stem cell niche. Cytokinin controls TA cell activities in a dose-dependent manner. Although the regulatory programs in each compartment of the root meristem have been identified, it is still unclear how they coordinate one another. Here, we investigate how PHABULOSA (PHB), under the posttranscriptional control of SHR and SCR, regulates TA cell activities. The root meristem and growth defects in shr or scr mutants were significantly recovered in the shr phb or scr phb double mutant, respectively. This rescue in root growth occurs in the absence of a QC. Conversely, when the modified PHB, which is highly resistant to microRNA, was expressed throughout the stele of the wild-type root meristem, root growth became very similar to that observed in the shr; however, the identity of the QC was unaffected. Interestingly, a moderate increase in PHB resulted in a root meristem phenotype similar to that observed following the application of high levels of cytokinin. Our protoplast assay and transgenic approach using ARR10 suggest that the depletion of TA cells by high PHB in the stele occurs via the repression of B-ARR activities. This regulatory mechanism seems to help to maintain the cytokinin homeostasis in the meristem. Taken together, our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain. PMID:25730098

  6. PHABULOSA controls the quiescent center-independent root meristem activities in Arabidopsis thaliana.

    PubMed

    Sebastian, Jose; Ryu, Kook Hui; Zhou, Jing; Tarkowská, Danuše; Tarkowski, Petr; Cho, Young-Hee; Yoo, Sang-Dong; Kim, Eun-Sol; Lee, Ji-Young

    2015-03-01

    Plant growth depends on stem cell niches in meristems. In the root apical meristem, the quiescent center (QC) cells form a niche together with the surrounding stem cells. Stem cells produce daughter cells that are displaced into a transit-amplifying (TA) domain of the root meristem. TA cells divide several times to provide cells for growth. SHORTROOT (SHR) and SCARECROW (SCR) are key regulators of the stem cell niche. Cytokinin controls TA cell activities in a dose-dependent manner. Although the regulatory programs in each compartment of the root meristem have been identified, it is still unclear how they coordinate one another. Here, we investigate how PHABULOSA (PHB), under the posttranscriptional control of SHR and SCR, regulates TA cell activities. The root meristem and growth defects in shr or scr mutants were significantly recovered in the shr phb or scr phb double mutant, respectively. This rescue in root growth occurs in the absence of a QC. Conversely, when the modified PHB, which is highly resistant to microRNA, was expressed throughout the stele of the wild-type root meristem, root growth became very similar to that observed in the shr; however, the identity of the QC was unaffected. Interestingly, a moderate increase in PHB resulted in a root meristem phenotype similar to that observed following the application of high levels of cytokinin. Our protoplast assay and transgenic approach using ARR10 suggest that the depletion of TA cells by high PHB in the stele occurs via the repression of B-ARR activities. This regulatory mechanism seems to help to maintain the cytokinin homeostasis in the meristem. Taken together, our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain. PMID:25730098

  7. Regulation of nitrogen uptake and assimilation: Effects of nitrogen source and root-zone and aerial environment on growth and productivity of soybean

    NASA Technical Reports Server (NTRS)

    Raper, C. David, Jr.

    1994-01-01

    The interdependence of root and shoot growth produces a functional equilibrium as described in quantitative terms by numerous authors. It was noted that bean seedlings grown in a constant environment tended to have a constant distribution pattern of dry matter between roots and leaves characteristic of the set of environmental conditions. Disturbing equilibrium resulted in a change in relative growth of roots and leaves until the original ratio was restored. To define a physiological basis for regulation of nitrogen uptake within the balance between root and shoot activities, the authors combined a partioning scheme and a utilization priority assumption in which: (1) all carbon enters the plant through photosynthesis in leaves and all nitrogen enters the plant through active uptake by roots, (2) nitrogen uptake by roots and secretion into the xylem for transport to the shoots are active processes, (3) availability of exogenous nitrogen determines concentration of soluble carbohydrates within the roots, (4) leaves are a source and a sink for carbohydrates, and (5) the requirement for nitrogen by leaf growth is proportionally greater during initiation and early expansion than during later expansion.

  8. How to Make an Active Zone: Unexpected Universal Functional Redundancy between RIMs and RIM-BPs.

    PubMed

    Acuna, Claudio; Liu, Xinran; Südhof, Thomas C

    2016-08-17

    RIMs and RIM-binding proteins (RBPs) are evolutionary conserved multidomain proteins of presynaptic active zones that are known to recruit Ca(2+) channels; in addition, RIMs perform well-recognized functions in tethering and priming synaptic vesicles for exocytosis. However, deletions of RIMs or RBPs in mice cause only partial impairments in various active zone functions and have no effect on active zone structure, as visualized by electron micrographs, suggesting that their contribution to active zone functions is limited. Here, we show in synapses of the calyx of Held in vivo and hippocampal neurons in culture that combined, but not individual, deletions of RIMs and RBPs eliminate tethering and priming of synaptic vesicles, deplete presynaptic Ca(2+) channels, and ablate active zone complexes, as analyzed by electron microscopy of chemically fixed synapses. Thus, RBPs perform unexpectedly broad roles at the active zone that together with those of RIMs are essential for all active zone functions. PMID:27537484

  9. Phytochemical and antifungal activities of Uvaria. chamae leaves and roots, Spondias mombin leaves and bark and Combretum racemosum leaves.

    PubMed

    Okwuosa, O M T B; Chukwura, E I; Chukwuma, G O; Okwuosa, C N; Enweani, I B; Agbakoba, N R; Chukwuma, C M; Manafa, P O; Umedum, C U

    2012-12-01

    The effects of crude and dilutions of aqueous, methanolic and n-hexane extracts of Uvaria chamae (roots and leaves), Spondias mombin (leaves and bark) and Combretum racemosum (Leaves), on pathogenic candida albicans and aspergillus niger was studied. The aim was to contribute to the search for a cheaper, conventional cure for both fungi. Phytochemical analysis revealed varying degrees of alkaloids, glycosides, saponin, lipid and oil, tannins, flavonoids, terpenoids and acids. Agar diffusion method was used for anti fungal assay. Minimum inhibitory concentration (mic) used was 10 mg/ml of extract and dilutions of the non polar solvents of 10 (-1) and 10(-2) was used. Results showed that none of the plant parts was active against aspergillus niger. Combretum racemosum had no antifungal effect on tested organisms as well as the different dilutions. However crude methanolic extract of uvaria (roots and leaves), spondias ( bark and leaves ), and n-hexane extracts of uvaria (leaves and roots), produced anti candidal effects with diameters in this order 14.67 +/- 0.72mm, 10.67 +/- 0.52 mm, 11.00 +/- 0.47 mm, 15.00 +/- 0.47 mm, and 14.67 +/- 0.72 mm respectively. Some of the plant parts especially uvaria had zones of inhibition at a confidence limit comparable with control drug which is ketoconazole and it had inhibitory effects at a diameter of 20.06 +/- 0.40 mm. PMID:23678643

  10. 78 FR 14963 - Foreign-Trade Zone 163-Ponce, Puerto Rico; Authorization of Production Activity; Zimmer...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-08

    ... Foreign-Trade Zones Board Foreign-Trade Zone 163--Ponce, Puerto Rico; Authorization of Production Activity; Zimmer Manufacturing BV (Medical Devices); Ponce, Puerto Rico On November 1, 2012, CODEZOL, C.D., grantee of FTZ 163, submitted a notification of proposed production activity to the Foreign-Trade Zones...

  11. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Activities Far East Marine... SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE PORT ZONES Fourteenth Coast Guard District § 3.70-20 Activities Far East Marine Inspection Zone....

  12. Length and activity of the root apical meristem revealed in vivo by infrared imaging.

    PubMed

    Bizet, François; Hummel, Irène; Bogeat-Triboulot, Marie-Béatrice

    2015-03-01

    Understanding how cell division and cell elongation influence organ growth and development is a long-standing issue in plant biology. In plant roots, most of the cell divisions occur in a short and specialized region, the root apical meristem (RAM). Although RAM activity has been suggested to be of high importance to understand how roots grow and how the cell cycle is regulated, few experimental and numeric data are currently available. The characterization of the RAM is difficult and essentially based upon cell length measurements through destructive and time-consuming microscopy approaches. Here, a new non-invasive method is described that couples infrared light imaging and kinematic analyses and that allows in vivo measurements of the RAM length. This study provides a detailed description of the RAM activity, especially in terms of cell flux and cell division rate. We focused on roots of hydroponic grown poplars and confirmed our method on maize roots. How the RAM affects root growth rate is studied by taking advantage of the high inter-individual variability of poplar root growth. An osmotic stress was applied and did not significantly affect the RAM length, highlighting its homeostasis in short to middle-term responses. The methodology described here simplifies a lot experimental procedures, allows an increase in the number of individuals that can be taken into account in experiments, and means new experiments can be formulated that allow temporal monitoring of the RAM length. PMID:25540436

  13. Length and activity of the root apical meristem revealed in vivo by infrared imaging

    PubMed Central

    Bizet, François; Hummel, Irène; Bogeat-Triboulot, Marie-Béatrice

    2015-01-01

    Understanding how cell division and cell elongation influence organ growth and development is a long-standing issue in plant biology. In plant roots, most of the cell divisions occur in a short and specialized region, the root apical meristem (RAM). Although RAM activity has been suggested to be of high importance to understand how roots grow and how the cell cycle is regulated, few experimental and numeric data are currently available. The characterization of the RAM is difficult and essentially based upon cell length measurements through destructive and time-consuming microscopy approaches. Here, a new non-invasive method is described that couples infrared light imaging and kinematic analyses and that allows in vivo measurements of the RAM length. This study provides a detailed description of the RAM activity, especially in terms of cell flux and cell division rate. We focused on roots of hydroponic grown poplars and confirmed our method on maize roots. How the RAM affects root growth rate is studied by taking advantage of the high inter-individual variability of poplar root growth. An osmotic stress was applied and did not significantly affect the RAM length, highlighting its homeostasis in short to middle-term responses. The methodology described here simplifies a lot experimental procedures, allows an increase in the number of individuals that can be taken into account in experiments, and means new experiments can be formulated that allow temporal monitoring of the RAM length. PMID:25540436

  14. Red American Ginseng: Ginsenoside Constituents and Antiproliferative Activities of Heat-Processed Panax quinquefolius Roots

    PubMed Central

    Wang, Chong-Zhi; Aung, Han H.; Ni, Ming; Wu, Ji-An; Tong, Robin; Wicks, Sheila; He, Tong-Chuan; Yuan, Chun-Su

    2009-01-01

    Red Asian ginseng (Panax ginseng C. A. Meyer, Araliaceae) is used in many Oriental countries. In this study, the saponin constituents and anticancer activities of steamed American ginseng (Panax quinquefolius L.) roots were evaluated. The contents of 12 ginsenosides in the roots were determined using high performance liquid chromatography (HPLC). After the steaming treatment (100 – 120 °C for 1 h and 120 °C for 0.5 – 4 h), the quantity of 7 ginsenosides decreased and that of 5 others increased. The content of ginsenoside Rg3, a previously recognized anticancer compound, increased significantly when the root was steamed at 120 °C for 0.5 – 3 h. The antiproliferative effects of unsteamed and steamed (120 °C for 1 h and 2 h) American ginseng root extracts were assayed by the modified trichrome stain (MTS) method using three cancer cell lines (SW-480, HT-29, NSCLC). Heat-processing increased the antiproliferative effect of American ginseng significantly, and the activity of the extract from roots steamed for 2 h was greater than that of roots steamed for 1 h. Chemical constituents and antiproliferative activities of white and red Asian ginseng have also been evaluated. Five representative ginsenosides, Rb1, Rd, Re, Rg2 and Rg3, were studied. Ginsenoside Rg3 had the most potent effect. The antiproliferative activities of red American ginseng are augmented when ginsenoside Rg3 is increased. PMID:17538869

  15. Antimicrobial and antileishmanial activities of diterpenoids isolated from the roots of Salvia deserta

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Four diterpenes with biological activity were isolated from Salvia deserta roots. Taxodione was considered leishmanicidal, with IC50 value of 0.46 µg/mL against Leishimania donovani and also exhibited antifungal and antimicrobial activities. Ferruginol displayed the greatest activity (24-h IC50 1.29...

  16. Spatial distribution of microfractures in damage zone along active faults

    NASA Astrophysics Data System (ADS)

    Mizoguchi, K.; Ueta, K.

    2011-12-01

    For basement faults without overlying quaternary sediments, there are few methods to determine whether the fault is active or not. Recently, we focus on microfracture characteristics of damage zone along active faults as used for the assessment of seismic activity of basement faults. In this study, we examined a newly-found active fault (Sasaki et al., 2011) located to the east of the epicentral area of 1943 Tottori earthquake, southwest Japan. The fault zone consists of the 75 cm thick fault core of the purple-colored clayey fault gouge and the fault breccia with cataclastic foliation, and the surrounding damage zone developed in Cretaceous Kyushozan granite. A subsidiary fault accompanying a fault core of white clayey fault gouge that ranges from 3 to 5 mm thickness is located at about 110 m from the main fault. We collected ten orientated samples 9 m to 180 m from the main fault. The samples were coated with epoxy and then thin sections were cut perpendicular to the fault plane and parallel to a horizontal plane because the slip direction is unknown. Microfracture density data were collected from 40 quartz grains per thin section (per sample). A thin section is marked with a square grid at 3 mm intervals and we picked one grain up in each square of the grid marked on the thin section to reduce operator sampling bias resulting from the selection of quartz grains. Quartz is suitable to estimate the damage that the rock sample has sustained because quartz without cleavage acts as an isotropic medium for fracturing and it is physically and chemically resistant to weathering than other minerals constituting the granite. We counted the number of microfractures that intersected a line which was drawn from the edge of each quartz grain, through the center point, to the other edge of the grain. The linear microfracture density for each sample is calculated to be the total number of microfractures intersecting the lines divided by the total counting line length. Under the

  17. Tectonic Transition Between the Southern Extent of the Cascadia Subduction Zone and the Northernmost San Andreas Fault System near Root Creek, Northern California

    NASA Astrophysics Data System (ADS)

    Nicovich, S.; Leroy, T. H.; Hemphill-Haley, M.; Oswald, J. A.

    2013-12-01

    The primary objective of this project is to characterize the transition between Cascadia subduction zone (CSZ)-related structures and the northern-most extent of faults associated with the San Andreas Fault (SAF) transform margin in northwestern California, specifically the transition between the Maacama Fault zone and the Little Salmon Fault. The Little Salmon Fault, a large, northwest-trending thrust fault, arguably near the base of the fold and thrust belt associated with the Cascadia megathrust, extends southwest near the latitude of the Mendocino Triple Junction. The transition from the southern end of the Cascadia subduction zone and related faults to the northward migrating transform margin is poorly understood. Deformation of Neogene sediments near the confluence of Root Creek and the Van Duzen River, approximately 10 miles west of the town of Bridgeville, may provide clues to the broad evolution from compressional tectonic forces of the southernmost CSZ to translational motion of the northern SAF system. This study includes documentation of a faulted and folded strath terrace near the mouth of Root Creek and mapping of adjacent deformed young deposits. Fracture data gathered at this and other nearby sites provides insight into local tectonic strain. Geological mapping incorporates high resolution topographic data and field information about tectonic geomorphological features and the structural characteristics of this transition zone.

  18. Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone

    USGS Publications Warehouse

    Bachand, Philip A.M.; Bachand, Sandra M.; Fleck, Jacob A.; Alpers, Charles N.; Stephenson, Mark; Windham-Myers, Lisamarie

    2014-01-01

    Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~ 3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m− 2 for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m− 2. These exports are

  19. Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone.

    PubMed

    Bachand, P A M; Bachand, S M; Fleck, J A; Alpers, C N; Stephenson, M; Windham-Myers, L

    2014-02-15

    Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1 μg m(-2) for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3 μg m(-2). These exports are within the

  20. Reprint of "Methylmercury production in and export from agricultural wetlands in California, USA: the need to account for physical transport processes into and out of the root zone".

    PubMed

    Bachand, P A M; Bachand, S M; Fleck, J A; Alpers, C N; Stephenson, M; Windham-Myers, L

    2014-06-15

    Concentration and mass balance analyses were used to quantify methylmercury (MeHg) loads from conventional (white) rice, wild rice, and fallowed fields in northern California's Yolo Bypass. These analyses were standardized against chloride to distinguish transport pathways and net ecosystem production (NEP). During summer, chloride loads were both exported with surface water and moved into the root zone at a 2:1 ratio. MeHg and dissolved organic carbon (DOC) behaved similarly with surface water and root zone exports at ~3:1 ratio. These trends reversed in winter with DOC, MeHg, and chloride moving from the root zone to surface waters at rates opposite and exceeding summertime root zone fluxes. These trends suggest that summer transpiration advectively moves constituents from surface water into the root zone, and winter diffusion, driven by concentration gradients, subsequently releases those constituents into surface waters. The results challenge a number of paradigms regarding MeHg. Specifically, biogeochemical conditions favoring microbial MeHg production do not necessarily translate to synchronous surface water exports; MeHg may be preserved in the soils allowing for release at a later time; and plants play a role in both biogeochemistry and transport. Our calculations show that NEP of MeHg occurred during both summer irrigation and winter flooding. Wild rice wet harvesting and winter flooding of white rice fields were specific practices that increased MeHg export, both presumably related to increased labile organic carbon and disturbance. Outflow management during these times could reduce MeHg exports. Standardizing MeHg outflow:inflow concentration ratios against natural tracers (e.g. chloride, EC) provides a simple tool to identify NEP periods. Summer MeHg exports averaged 0.2 to 1μgm(-2) for the different agricultural wetland fields, depending upon flood duration. Average winter MeHg exports were estimated at 0.3μgm(-2). These exports are within the range

  1. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone

    SciTech Connect

    Feng, Huan; Tappero, Ryan; Zhang, Weiguo; Liu, Wenliang; Yu, Lizhong; Qian, Yu; Wang, Jun; Wang, Jia -Jun; Eng, Christopher; Liu, Chang -Jun; Jones, Keith W.

    2015-07-26

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g., Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. As a result, this micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system.

  2. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone

    DOE PAGESBeta

    Feng, Huan; Tappero, Ryan; Zhang, Weiguo; Liu, Wenliang; Yu, Lizhong; Qian, Yu; Wang, Jun; Wang, Jia -Jun; Eng, Christopher; Liu, Chang -Jun; et al

    2015-07-26

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g.,more » Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. As a result, this micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system.« less

  3. Synchrotron micro-scale study of trace metal transport and distribution in Spartina alterniflora root system in Yangtze River intertidal zone.

    PubMed

    Feng, Huan; Zhang, Weiguo; Liu, Wenliang; Yu, Lizhong; Qian, Yu; Wang, Jun; Wang, Jia-Jun; Eng, Christopher; Liu, Chang-Jun; Jones, Keith W; Tappero, Ryan

    2015-12-01

    This study is focused on micro-scale measurement of metal (Ca, Cl, Fe, K, Mn, Cu, Pb, and Zn) distributions in Spartina alterniflora root system. The root samples were collected in the Yangtze River intertidal zone in July 2013. Synchrotron X-ray fluorescence (XRF), computed microtomography (CMT), and X-ray absorption near-edge structure (XANES) techniques, which provide micro-meter scale analytical resolution, were applied to this study. Although it was found that the metals of interest were distributed in both epidermis and vascular tissue with the varying concentrations, the results showed that Fe plaque was mainly distributed in the root epidermis. Other metals (e.g., Cu, Mn, Pb, and Zn) were correlated with Fe in the epidermis possibly due to scavenge by Fe plaque. Relatively high metal concentrations were observed in the root hair tip. This micro-scale investigation provides insights of understanding the metal uptake and spatial distribution as well as the function of Fe plaque governing metal transport in the root system. PMID:26208662

  4. Enhanced lipoxygenase activity is involved in the stress response but not in the harmful lipid peroxidation and cell death of short-term cadmium-treated barley root tip.

    PubMed

    Liptáková, Ľubica; Huttová, Jana; Mistrík, Igor; Tamás, Ladislav

    2013-05-01

    Root growth inhibition and radial root swelling were the characteristic symptoms of barley root tips after the short-term exposure of roots to 15 and 30μM Cd. Higher Cd concentrations caused extensive cell death and root growth arrest. Enhanced lipid peroxidation was observed as early as 1h after the short-term treatment in a Cd concentration-dependent manner. In contrast to lipid peroxidation, the induction of lipoxygenase activity was detected only 3h after the exposure of roots to 15 or 30μM Cd. In addition, it was not observed in 60μM Cd-treated root tips. The highest lipoxygenase activity was detected 6h after 15μM Cd treatment in the meristematic and elongation zone of root tip and was probably associated with the radial expansion of cells. Our results indicate that the upregulation of lipoxygenase is an important component of stress response in barley roots to toxic Cd. It is probably involved in the morphological stress response of root tips or/and in the alleviation of Cd-induced toxic alterations in plant cell membranes, but it is not responsible for the Cd-induced harmful lipid peroxidation and cell death. PMID:23395539

  5. Adsorption studies of methylene blue and phenol onto vetiver roots activated carbon prepared by chemical activation.

    PubMed

    Altenor, Sandro; Carene, Betty; Emmanuel, Evens; Lambert, Jacques; Ehrhardt, Jean-Jacques; Gaspard, Sarra

    2009-06-15

    Vetiver roots have been utilized for the preparation of activated carbon (AC) by chemical activation with different impregnation ratios of phosphoric acid, X(P) (gH(3)PO(4)/g precursor): 0.5:1; 1:1 and 1.5:1. Textural characterization, determined by nitrogen adsorption at 77K shows that mixed microporous and mesoporous structures activated carbons (ACs) with high surface area (>1000 m(2)/g) and high pore volume (up to 1.19 cm(3)/g) can be obtained. The surface chemical properties of these ACs were investigated by X-ray photoelectron spectroscopy (XPS) and Boehm titration. Their textural and chemical characteristics were compared to those of an AC sample obtained by steam activation of vetiver roots. Classical molecules used for characterizing liquid phase adsorption, phenol and methylene blue (MB), were used. Adsorption kinetics of MB and phenol have been studied using commonly used kinetic models, i.e., the pseudo-first-order model, the pseudo-second-order model, the intraparticle diffusion model and as well the fractal, BWS (Brouers, Weron and Sotolongo) kinetic equation. The correlation coefficients (R(2)) and the normalized standard deviation Deltaq (%) were determined showing globally, that the recently derived fractal kinetic equation could best describe the adsorption kinetics for the adsorbates tested here, indicating a complex adsorption mechanism. The experimental adsorption isotherms of these molecules on the activated carbon were as well analysed using four isotherms: the classical Freundlich, Langmuir, Redlich-Peterson equations, but as well the newly published deformed Weibull Brouers-Sotolongo isotherm. The results obtained from the application of the equations show that the best fits were achieved with the Brouers-Sotolongo equation and with the Redlich-Peterson equation. Influence of surface functional groups towards MB adsorption is as well studied using various ACs prepared from vetiver roots and sugar cane bagasse. Opposite effects governing MB

  6. Extracellular melanogenesis inhibitory activity and the structure-activity relationships of ugonins from Helminthostachys zeylanica roots.

    PubMed

    Yamauchi, Kosei; Mitsunaga, Tohru; Itakura, Yuki; Batubara, Irmanida

    2015-07-01

    Ugonin J, K, and L, which are luteolin derivatives, were isolated from Helminthostachys zeylanica roots by a series of chromatographic separations of a 50% ethanol/water extract. They were identified using nuclear magnetic resonance (NMR), ultraviolet (UV) spectra, and ultra-performance liquid chromatography coupled to time-of-flight mass spectrometry (UPLC-TOF-MS). In this study, the intra and extracellular melanogenic activity of the ugonins were determined using B16 melanoma cells. The results showed that ugonin J at 12.5, 25, and 50μM reduced extracellular melanin contents to 75, 16, and 14%, respectively, compared to the control. This indicates that ugonin J showed a stronger activity than arbutin, used as the positive control. Moreover, ugonin K showed a more potent inhibition with 19, 8, and 9% extracellular melanin reduction at the same concentrations, than that shown by ugonin J. In contrast, ugonin L did not inhibit intra- or extracellular melanogenic activity. Furthermore, in order to investigate the structure-activity relationships of the ugonins, the intra- and extracellular melanogenic activity of luteolin, methylluteolin, quercetin, eriodictyol, apigenin, and chrysin were determined. Consequently, it was suggested that the catechol and flavone skeleton of ugonin K is essential for the extracellular melanogenic inhibitory activity, and the low polarity substituent groups on the A ring of ugonin K may increase the activity. PMID:25979512

  7. Effect of Acetylene on Root Respiration and Acetylene Reducing Activity in Nodulated Soya Bean

    PubMed Central

    Gerbaud, Alain

    1990-01-01

    Acetylene decreased root and nodule respiration, as measured by CO2 evolution of nodulated or non-nodulated Glycine max. An inhibition of 25 to 35% in 15 to 30 minutes occurred when 13% C2H2 was introduced in the gas flux which aerated the root nutrient solution. When the light intensity was doubled to 800 microeinsteins per square meter per second, the inhibition increased to 50% and nodule acetylene reduction activity was inhibited 50%. Images Figure 1 PMID:16667582

  8. Super-resolution microscopy of the synaptic active zone

    PubMed Central

    Ehmann, Nadine; Sauer, Markus; Kittel, Robert J.

    2015-01-01

    Brain function relies on accurate information transfer at chemical synapses. At the presynaptic active zone (AZ) a variety of specialized proteins are assembled to complex architectures, which set the basis for speed, precision and plasticity of synaptic transmission. Calcium channels are pivotal for the initiation of excitation-secretion coupling and, correspondingly, capture a central position at the AZ. Combining quantitative functional studies with modeling approaches has provided predictions of channel properties, numbers and even positions on the nanometer scale. However, elucidating the nanoscopic organization of the surrounding protein network requires direct ultrastructural access. Without this information, knowledge of molecular synaptic structure-function relationships remains incomplete. Recently, super-resolution microscopy (SRM) techniques have begun to enter the neurosciences. These approaches combine high spatial resolution with the molecular specificity of fluorescence microscopy. Here, we discuss how SRM can be used to obtain information on the organization of AZ proteins. PMID:25688186

  9. Magnetic fields over active tectonic zones in ocean

    USGS Publications Warehouse

    Kopytenko, Yu. A.; Serebrianaya, P.M.; Nikitina, L.V.; Green, A.W.

    2002-01-01

    The aim of our work is to estimate the electromagnetic effects that can be detected in the submarine zones with hydrothermal activity. It is known that meso-scale flows appear in the regions over underwater volcanoes or hot rocks. Their origin is connected with heat flux and hot jets released from underwater volcanoes or faults in a sea bottom. Values of mean velocities and turbulent velocities in plumes were estimated. Quasiconstant magnetic fields induced by a hot jet and a vortex over a plume top are about 1-40 nT. Variable magnetic fields are about 0.1-1 nT. These magnetic disturbances in the sea medium create an additional natural electromagnetic background that must be considered when making detailed magnetic surveys. ?? 2002 Elsevier Science Ltd. All rights reserved.

  10. Antioxidant, antimicrobial and urease inhibiting activities of methanolic extracts from Cyphostemma digitatum stem and roots.

    PubMed

    Khan, Rasool; Saif, Abdullah Qasem; Quradha, Mohammed Mansour; Ali, Jawad; Rauf, Abdur; Khan, Ajmal

    2016-01-01

    Cyphostemma digitatum stem and roots extracts were investigated for antioxidant, antimicrobial, urease inhibition potential and phytochemical analysis. Phytochemical screening of the roots and stem extract revealed the presence of secondary metabolites including flavonoids, alkaloids, coumarins, saponins, terpenoids, tannins, carbohydrates/reducing sugars and phenolic compounds. The methanolic extracts of the roots displayed highest antioxidant activity (93.518%) against DPPH while the crude methanolic extract of the stem showed highest antioxidant activity (66.163%) at 100 μg/mL concentration. The methanolic extracts of both stem and roots were moderately active or even found to be less active against the selected bacterial and fungal strains (Tables S2 and S3). The roots extract (methanol) showed significant urease enzyme inhibition activity (IC50 = 41.2 ± 0.66; 0.2 mg/mL) while the stem extract was found moderately active (IC50 = 401.1 ± 0.58; 0.2 mg/mL) against thiourea (IC50 = 21.011; 0.2 mg/mL). PMID:25801225

  11. H2O2 and ABA signaling are responsible for the increased Na+ efflux and water uptake in Gossypium hirsutum L. roots in the non-saline side under non-uniform root zone salinity.

    PubMed

    Kong, Xiangqiang; Luo, Zhen; Dong, Hezhong; Eneji, A Egrinya; Li, Weijiang

    2016-04-01

    Non-uniform root salinity increases the Na(+)efflux, water use, and growth of the root in non-saline side, which may be regulated by some form of signaling induced by the high-salinity side. However, the signaling and its specific function have remained unknown. Using a split-root system to simulate a non-uniform root zone salinity inGossypium hirsutumL., we showed that the up-regulated expression of sodium efflux-related genes (SOS1,SOS2,PMA1, andPMA2) and water uptake-related genes (PIP1andPIP2) was possibly involved in the elevated Na(+)efflux and water use in the the roots in the non-saline side. The increased level of indole acetic acid (IAA) in the non-saline side was the likely cause of the increased root growth. Also, the abscisic acid (ABA) and H2O2contents in roots in the non-saline side increased, possibly due to the increased expression of their key biosynthesis genes,NCEDandRBOHC, and the decreased expression of ABA catabolicCYP707Agenes. Exogenous ABA added to the non-saline side induced H2O2generation by up-regulating theRBOHCgene, but this was decreased by exogenous fluridone. Exogenous H2O2added to the non-saline side reduced the ABA content by down-regulatingNCEDgenes, which can be induced by diphenylene iodonium (DPI) treatment in the non-saline side, suggesting a feedback mechanism between ABA and H2O2.Both exogenous ABA and H2O2enhanced the expression ofSOS1,PIP1;7,PIP2;2, andPIP2;10genes, but these were down-regulated by fluridone and DPI, suggesting that H2O2and ABA are important signals for increasing root Na(+)efflux and water uptake in the roots in the non-saline side. PMID:26862153

  12. Cell-Specific Production and Antimicrobial Activity of Naphthoquinones in Roots of Lithospermum erythrorhizon1

    PubMed Central

    Brigham, Lindy A.; Michaels, Paula J.; Flores, Hector E.

    1999-01-01

    Pigmented naphthoquinone derivatives of shikonin are produced at specific times and in specific cells of Lithospermum erythrorhizon roots. Normal pigment development is limited to root hairs and root border cells in hairy roots grown on “noninducing” medium, whereas induction of additional pigment production by abiotic (CuSO4) or biotic (fungal elicitor) factors increases the amount of total pigment, changes the ratios of derivatives produced, and initiates production of pigment de novo in epidermal cells. When the biological activity of these compounds was tested against soil-borne bacteria and fungi, a wide range of sensitivity was recorded. Acetyl-shikonin and β-hydroxyisovaleryl-shikonin, the two most abundant derivatives in both Agrobacterium rhizogenes-transformed “hairy-root” cultures and greenhouse-grown plant roots, were the most biologically active of the seven compounds tested. Hyphae of the pathogenic fungi Rhizoctonia solani, Pythium aphanidermatum, and Nectria hematococca induced localized pigment production upon contact with the roots. Challenge by R. solani crude elicitor increased shikonin derivative production 30-fold. We have studied the regulation of this suite of related, differentially produced, differentially active compounds to understand their role(s) in plant defense at the cellular level in the rhizosphere. PMID:9952436

  13. The use of root gall ratings to determine high risk zones in cotton fields infested by Meloidogyne Incognita

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Cotton farmers need a reliable, accurate, and inexpensive method for determining the potential threat of root-knot nematodes (RKN) to cotton within individual fields for site specific application of nematicides. Evaluation of cotton roots for RKN galling at harvest may be an alternative to soil ana...

  14. OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).

    PubMed

    Qi, YanHua; Wang, SuiKang; Shen, ChenJia; Zhang, SaiNa; Chen, Yue; Xu, YanXia; Liu, Yu; Wu, YunRong; Jiang, DeAn

    2012-01-01

    • Auxin has an important role in maintaining optimal root system architecture (RSA) that can cope with growth reductions of crops caused by water or nutrient shortages. However, the mechanism of controlling RSA remains largely unclear. Here, we found a limiting factor of RSA--OsARF12--an auxin response factor whose knockout led to decreased primary root length in rice (Oryza sativa). • OsARF12 as a transcription activator can facilitate the expression of the auxin response element DR5::GFP, and OsARF12 was inhibited by osa-miRNA167d by transient expression in tobacco and rice callus. • The root elongation zones of osarf12 and osarf12/25, which had lower auxin concentrations, were distinctly shorter than for the wild-type, possibly as a result of decreased expression of auxin synthesis genes OsYUCCAs and auxin efflux carriers OsPINs and OsPGPs. The knockout of OsARF12 also altered the abundance of mitochondrial iron-regulated (OsMIR), iron (Fe)-regulated transporter1 (OsIRT1) and short postembryonic root1 (OsSPR1) in roots of rice, and resulted in lower Fe content. • The data provide evidence for the biological function of OsARF12, which is implicated in regulating root elongation. Our investigation contributes a novel insight for uncovering regulation of RSA and the relationship between auxin response and Fe acquisition. PMID:21973088

  15. Mercury net methylation in five tropical flood plain regions of Brazil: high in the root zone of floating macrophyte mats but low in surface sediments and flooded soils.

    PubMed

    Guimarães, J R; Meili, M; Hylander, L D; de Castro e Silva, E; Roulet, M; Mauro, J B; de Lemos, R

    2000-10-16

    1.8 to 35%. Methylation was lower in washed roots than in untreated roots of E. azurea and methylation in solids isolated from the roots, was higher than in sediments but lower than in untreated roots. This indicates that the methylation in roots zones occurs mainly in the root-associated solids. Floating meadows are sites of intense production of biomass and of highly bioavailable MeHg and appear to be an essential link of the MeHg cycle in tropical aquatic systems. PMID:11036981

  16. The possibility of a fuzzy zone of semiotic activity.

    PubMed

    Morioka, Masayoshi

    2007-12-01

    In this commentary I tried to further develop the idea of Madureira (Integr Psych Behav Sci, 42(2), 2007), who challenges to clarify the complex sexuality problem of homophobia from the viewpoint of the cultural semiotic activity. Two remarking points were proposed in this commentary article. First, I took notice of the boundary phenomenon constructed between the homophobia and the other. It has a cultural meaning. Concerning with this process, I introduced and examined the concept of tonus that is sensed a subtle changing process of tension in self-other relationship. The second, I discussed about the fuzzy zone of semiotic activity. If one can feel in oneself fuzzy awareness into the source of discomfort affect, it is able to be a creative moment in the tension of fuzzy field (A and non-A) where generates dialogical activity in both vertical and horizontal. Through this discussion, I proposed some remarks for the dissolution on the culturally constructed prejudice of sexuality. PMID:18232094

  17. Hydrothermal mineralogy and fluid inclusions chemistry to understand the roots of active geothermal systems

    NASA Astrophysics Data System (ADS)

    Chambefort, I. S.; Dilles, J. H.; Heinrich, C.

    2013-12-01

    An integrated study to link magmatic textures, magmatic mineral compositions, hydrothermal alteration zoning, hydrothermal mineral chemistry, and fluid inclusion compositions has been undertaken to link an intrusive complex and its degassing alteration halo with their surface equivalent in an active geothermal system. Ngatamariki geothermal system, New Zealand, presents a unique feature in the Taupo Volcanic Zone (TVZ). Drilling intercepted an intrusive complex with a high temperature alteration halo similarly to what is observed in magmatic-derived ore deposits. Thus it presents the perfect opportunity to study the magmatic-hydrothermal transition of the TVZ by characterizing the nature of the deep magmatic fluids link to the heat source of the world known geothermal fields. The record of magmatic-hydrothermal fluid-rock interactions preserved at Ngatamariki may be analogous of processes presently occurring at depth beneath TVZ geothermal systems. The intrusive complex consists of over 5 km3 of tonalite, diorite, basalt and aplitic dykes. Evidence of undercooling subsolidus magmatic textures such as myrmekite and skeletal overgrowth are commonly observed and often linked to volatile loss. The fluids released during the crystallization of the intrusive complex are interpreted to be at the origin of the surrounding high temperature alteration halo. Advanced argillic to potassic alteration and high temperature acidic assemblage is associated with high-temperature quartz veining at depth and vuggy silica at the paleo-surface. Major element compositions of the white micas associated with the high temperature halo show a transition from, muscovite to phengite, muscovitic illite away from the intrusion, with a transition to pyrophyllite and/ or topaz, and andalusite characteristic of more acidic conditions. Abundant high-density (up to 59 wt% NaCl eq and homogenization temperatures of 550 degree Celsius and above) coexist with low-density vapor fluid inclusions. This

  18. Antioxidant activity of essential oil and extracts of Valeriana jatamansi roots.

    PubMed

    Thusoo, Sakshima; Gupta, Sahil; Sudan, Rasleen; Kour, Jaspreet; Bhagat, Sahil; Hussain, Rashid; Bhagat, Madhulika

    2014-01-01

    Valeriana jatamansi is an indigenous medicinal plant used in the treatment of a number of diseases. In the present study, chemical composition of the essential oil was determined by GC-MS. Seven major components were identified in Valeriana jatamansi essential oil, namely, β-vatirenene, β-patchoulene, dehydroaromadendrene, β-gurjunene, patchoulic alcohol, β-guaiene, and α-muurolene. Methanolic, aqueous, and chloroform extracts of Valeriana jatamansi roots were also prepared and analyzed for their polyphenols and flavonoid content. Antioxidant activity of essential oil and different extracts of Valeriana jatamansi roots was determined by DPPH radical scavenging and chelation power assay. A linear correlation has been obtained by comparing the antioxidant activity and polyphenols and flavonoid content of the extracts. Results indicated that antioxidant activity of methanolic extract could be attributed to the presence of rich amount of polyphenols and flavonoid. Essential oil of Valeriana jatamansi roots showed moderate antioxidant activity. PMID:24804225

  19. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Activities Far East Marine... ZONES Fourteenth Coast Guard District § 3.70-20 Activities Far East Marine Inspection Zone. (a) Activities Far East's office is located in Yokota, Japan. The boundaries of Activities Far East's...

  20. Chemical composition, antioxidant and antigenotoxic activities of different fractions of Gentiana asclepiadea L. roots extract

    PubMed Central

    Mihailovic, Vladimir; Matic, Sanja; Mišic, Danijela; Solujic, Slavica; Stanic, Snežana; Katanic, Jelena; Mladenovic, Milan; Stankovic, Nevena

    2013-01-01

    The aim of this study was to evaluate the antioxidant and antigenotoxic activities of chloroform, ethyl acetate and n-butanol fractions obtained from Gentiana asclepiadea L. roots methanolic extract. The main secondary metabolites sweroside, swertiamarin and gentiopicrine were quantified in G. asclepiadea root extracts using HPLC-DAD analysis. Amount of total phenols, flavonoids, flavonols and gallotannins was also determined. The antigenotoxic potential of extracts from roots of G. asclepiadea was assessed using the standard in vivo procedure for the detection of sex linked recessive lethal mutations in Drosophila melanogaster males treated with ethyl methanesulfonate (EMS). The results showed that the most abundant secoiridoid in G. asclepiadea roots was gentiopicrine and its content in the n-butanol fraction (442.89 mg/g) was the highest. Among all extracts, ethyl acetate fraction showed the highest antioxidant activity, as well as total phenolics (146.64 GAE/g), flavonoids (44.62 RUE/g), flavonols (22.71 RUE/g) and gallotannins (0.99 mg GAE/g) content. All the fractions showed antioxidant activity using in vitro model systems and the results have been correlated with total phenolics, flavonoids, flavonols and gallotannins content. In addition to antioxidant activity, G. asclepiadea root extract fractions possess an antigenotoxic effect against DNA damage induced by alkylation with EMS. The antioxidant activity exhibited by G. asclepiadea depended on the phenolic compounds content of the tested extracts, while there was no significant difference in the antigenotoxic potential between fractions. PMID:26622219

  1. The locations and amounts of endogenous ions and elements in the cap and elongating zone of horizontally oriented roots of Zea mays L.: an electron-probe EDS study

    NASA Technical Reports Server (NTRS)

    Moore, R.; Cameron, I. L.; Hunter, K. E.; Olmos, D.; Smith, N. K.

    1987-01-01

    We used quantitative electron-probe energy-dispersive x-ray microanalysis to localize endogenous Na, Cl, K, P, S, Mg and Ca in cryofixed and freeze-dried cryosections of the cap (i.e. the putative site of graviperception) and elongating zone (i.e. site of gravicurvature) of horizontally oriented roots of Zea mays. Ca, Na, Cl, K and Mg accumulate along the lower side of caps of horizontally oriented roots. The most dramatic asymmetries of these ions occur in the apoplast, especially the mucilage. We could not detect any significant differences in the concentrations of these ions in the central cytoplasm of columella cells along the upper and lower sides of caps of horizontally-oriented roots. However, the increased amounts of Na, Cl, K and Mg in the longitudinal walls of columella cells along the lower side of the cap suggest that these ions may move down through the columella tissue of horizontally-oriented roots. Ca also accumulates (largely in the mucilage) along the lower side of the elongating zone of horizontally-oriented roots, while Na, P, Cl and K tend to accumulate along the upper side of the elongating zone. Of these ions, only K increases in concentration in the cytoplasm and longitudinal walls of cortical cells in the upper vs lower sides of the elongating zone. These results indicate that (1) gravity-induced asymmetries of ions differ significantly in the cap and elongating zone of graviresponding roots, (2) Ca accumulates along the lower side of the cap and elongating zone of graviresponding roots, (3) increased growth of the upper side of the elongating zone of horizontally-oriented roots correlates positively with increased amounts of K in the cytoplasm and longitudinal walls of cortical cells, and (4) the apoplast (especially the mucilage) may be an important component of the pathway via which ions move in graviresponding rots of Zea mays. These results are discussed relative to mechanisms for graviperception and gravicurvature of roots.

  2. Phytochemical screening and antimicrobial activity of roots of Murraya koenigii (Linn.) Spreng. (Rutaceae)

    PubMed Central

    Vats, Manisha; Singh, Harneet; Sardana, Satish

    2011-01-01

    Murraya koenigii, family Rutaceae, commonly known as Curry leaf plant is a highly valued plant for its medicinal value and characteristic aroma. The plant is a rich source of carbazole alkaloids. The petroleum ether, chloroform, ethyl acetate and ethanol extracts of roots of the plant were screened for phytochemical properties and antimicrobial activity for Staphylococcus aureus, Micrococcus luteus, Bacillus subtilis, Escherichia coli, Pseudomonas aeruginosa, Candida albicans and Aspergillus niger. Phytochemical screening showed the presence of carbohydrates, alkaloids, steroids and flavonoids in the root extracts of the plant. The study shows that all the extracts possess remarkable antibacterial activity. Additionally, petroleum ether and chloroform extracts also had antifungal activity. PMID:24031791

  3. ABA-Mediated ROS in Mitochondria Regulate Root Meristem Activity by Controlling PLETHORA Expression in Arabidopsis

    PubMed Central

    Yang, Li; Zhang, Jing; He, Junna; Qin, Yingying; Hua, Deping; Duan, Ying; Chen, Zhizhong; Gong, Zhizhong

    2014-01-01

    Although research has determined that reactive oxygen species (ROS) function as signaling molecules in plant development, the molecular mechanism by which ROS regulate plant growth is not well known. An aba overly sensitive mutant, abo8-1, which is defective in a pentatricopeptide repeat (PPR) protein responsible for the splicing of NAD4 intron 3 in mitochondrial complex I, accumulates more ROS in root tips than the wild type, and the ROS accumulation is further enhanced by ABA treatment. The ABO8 mutation reduces root meristem activity, which can be enhanced by ABA treatment and reversibly recovered by addition of certain concentrations of the reducing agent GSH. As indicated by low ProDR5:GUS expression, auxin accumulation/signaling was reduced in abo8-1. We also found that ABA inhibits the expression of PLETHORA1 (PLT1) and PLT2, and that root growth is more sensitive to ABA in the plt1 and plt2 mutants than in the wild type. The expression of PLT1 and PLT2 is significantly reduced in the abo8-1 mutant. Overexpression of PLT2 in an inducible system can largely rescue root apical meristem (RAM)-defective phenotype of abo8-1 with and without ABA treatment. These results suggest that ABA-promoted ROS in the mitochondria of root tips are important retrograde signals that regulate root meristem activity by controlling auxin accumulation/signaling and PLT expression in Arabidopsis. PMID:25522358

  4. The influence of root assimilated inorganic carbon on nitrogen acquisition/assimilation and carbon partitioning.

    PubMed

    Viktor, A; Cramer, M D

    2005-01-01

    Understanding of the influences of root-zone CO2 concentration on nitrogen (N) metabolism is limited. The influences of root-zone CO2 concentration on growth, N uptake, N metabolism and the partitioning of root assimilated 14C were determined in tomato (Lycopersicon esculentum). Root, but not leaf, nitrate reductase activity was increased in plants supplied with increased root-zone CO2. Root phosphoenolpyruvate carboxylase activity was lower with NO3(-)- than with NH4(+)-nutrition, and in the latter, was also suppressed by increased root-zone CO2. Increased growth rate in NO3(-)-fed plants with elevated root-zone CO2 concentrations was associated with transfer of root-derived organic acids to the shoot and conversion to carbohydrates. With NH4(+)-fed plants, growth and total N were not altered by elevated root-zone CO2 concentrations, although 14C partitioning to amino acid synthesis was increased. Effects of root-zone CO2 concentration on N uptake and metabolism over longer periods (> 1 d) were probably limited by feedback inhibition. Root-derived organic acids contributed to the carbon budget of the leaves through decarboxylation of the organic acids and photosynthetic refixation of released CO2. PMID:15720630

  5. Time Series analysis of CO2 mixing ratios, Root zone Soil-Water, and Soil Temperature in a Mixed Rangeland of Central Texas

    NASA Astrophysics Data System (ADS)

    Solano, K. C.

    2008-05-01

    In rangelands, water can be the limiting resource that determines how vegetation will respond spatially and temporally to rising CO2 levels. Spatially, the transition zones between shrub and grasslands will be likely influenced by the water balance. Temporally, the soil-water dynamics in the soils of mixed rangelands is determined by antecedent soil-moisture conditions, shallow rooting depth of grasses, and water uptake by shrubs of water infiltrated past grass roots. At NOAA's GMD WKT tall tower in Moody, Texas, CO2 mole fractions have been collected as function of height (9m, 30m, 61m, 122m, 244m, 457m) from a very tall tower since February, 2001. Within the tower footprint, continuous soil-water, and soil temperature measurements from the root zone of grasses and shrubs were made during March, 2003 - June, 2004. Time series data were analyzed for coherence and phase using wavelets. My presentation focuses on the temporal relationship between the CO2 mixing ratios measured near ground (at 9m, 30m) from the tower, soil-water content, and soil temperature from this mixed rangeland site in Central Texas.

  6. A deuterium-based labeling technique for the investigation of rooting depths, water uptake dynamics and unsaturated zone water transport in semiarid environments

    NASA Astrophysics Data System (ADS)

    Beyer, M.; Koeniger, P.; Gaj, M.; Hamutoko, J. T.; Wanke, H.; Himmelsbach, T.

    2016-02-01

    Non- or minimum-invasive methods for the quantification of rooting depths of plants are rare, in particular in (semi-)arid regions; yet, this information is crucial for the parameterization of SVAT (Soil-Vegetation-Atmosphere Transfer) models and understanding of processes within the hydrological cycle. We present a technique utilizing the stable isotope deuterium (2H) applied as artificial tracer to investigate the vertical extent of the root zone, characterize water uptake dynamics of trees and shrubs at different depths and monitor transport of water through the unsaturated zone of dry environments. One liter of 35% deuterated water (2H2O) was punctually applied at several depths (0.5 m, 1 m, 2 m, 2.5 m and 4 m) at six different plots at a natural forested site in the Cuvelai-Etosha Basin (CEB), Namibia/Angola. Subsequently, uptake of the tracer was monitored by collecting plant samples (xylem and transpired water) up to seven days after tracer injection. Soil profiles at the plots were taken after the campaign and again after six months in order to evaluate the transport and distribution of 2H within the unsaturated zone. Of 162 plant samples taken, 31 samples showed clear signals of artificially introduced 2H, of which all originate from the plots labeled up to 2 m depth. No artificially injected 2H was found in plants when tracer application occurred deeper than 2 m. Results further indicate a sharing of water resources between the investigated shrubs and trees in the upper 1 m whilst tree roots seem to have better access to deeper layers of the unsaturated zone. The soil profiles taken after six months reveal elevated 2H-concentrations from depths as great as 4 m up to 1 m below surface indicating upward transport of water vapor. Purely diffuse transport towards the soil surface yielded an estimated 0.4 mm over the dry season. Results are of particular significance for a more precise parameterization of SVAT models and the formulation of water balances in

  7. Depth of the biologically active zone in upland habitats at the Hanford Site, Washington: Implications for remediation and ecological risk management.

    PubMed

    Sample, Bradley E; Lowe, John; Seeley, Paul; Markin, Melanie; McCarthy, Chris; Hansen, Jim; Aly, Alaa H

    2015-01-01

    Soil invertebrates, mammals, and plants penetrate and exploit the surface soil layer (i.e., the biologically active zone) to varying depths. As the US Department of Energy remediates radioactive and hazardous wastes in soil at the Hanford Site, a site-specific definition of the biologically active zone is needed to identify the depth to which remedial actions should be taken to protect the environment and avoid excessive cleanup expenditures. This definition may then be considered in developing a point of compliance for remediation in accordance with existing regulations. Under the State of Washington Model Toxic Control Act (MTCA), the standard point of compliance for soil cleanup levels with unrestricted land use is 457 cm (15 ft) below ground surface. When institutional controls are required to control excavations to protect people, MTCA allows a conditional point of compliance to protect biological resources based on the depth of the biologically active zone. This study was undertaken to identify and bound the biologically active zone based on ecological resources present at the Hanford Site. Primary data were identified describing the depths to which ants, mammals, and plants may exploit the surface soil column at the Hanford Site and other comparable locations. The maximum depth observed for harvester ants (Pogonomyrmex spp.) was 270 cm (8.9 ft), with only trivial excavation below 244 cm (8 ft). Badgers (Taxidea taxus) are the deepest burrowing mammal at the Hanford Site, with maximum burrow depths of 230 cm (7.6 ft); all other mammals did not burrow below 122 cm (4 ft). Shrubs are the deepest rooting plants with rooting depths to 300 cm (9.8 ft) for antelope bitterbrush (Purshia tridentata). The 2 most abundant shrub species did not have roots deeper than 250 cm (8.2 ft). The deepest rooted forb had a maximum root depth of 240 cm (7.9 ft). All other forbs and grasses had rooting depths of 200 cm (6.6 ft) or less. These data indicate that the biologically

  8. Prone to fix: Resilience of the active nitrogen-fixing rice root microbiome

    NASA Astrophysics Data System (ADS)

    Hurek, Thomas; Sabale, Mugdha; Sarkar, Abhijit; Pees, Tobias; Reinhold-Hurek, Barbara

    2016-04-01

    Due to water consumption, many lowland rice areas in Asia are undergoing a transition that involves adoption of new management strategies, with crop rotations encompassing a non-flooded crop, including maize. Shifting from flooded to non-flooded cropping is likely to affect microbial nitrogen cycling. For analysis of the root-associated microbiome of rice and maize in response to flooding or nitrogen fertilizer, we combine methods of microbial ecology (Next-Generation sequencing of amplicons), and a reductionist approach with pure cultures of the endophytic diazotroph Azoarus sp.. Field plots of the ICON project (Introducing non-flooded crops in rice-dominated landscapes: Impact on Carbon, nitrogen and water budgets) at the International Rice Research Institute in the Philippines were analyzed. Root-associated activity of nitrogenase gene expression was assessed by quantitative RT-PCR of nifH. For rice, expression levels were surprisingly stable, in response to non-flooded versus flooded conditions, or in response to conventional nitrogen fertilizer applications versus lack of N-fertilizer. In contrast, the active diazotrophic population of maize roots was not resistant to N-fertilization, nifH expression strongly decreased. Concordant changes in the diazotrophic resident or active communities were detected by nifH amplicon sequence analysis, based on bacterial DNA or mRNA, respectively. For high-resolution analyses of the endobiome in gnotobiotic culture, we developed a dual fluorescence reporter system for Azoarcus sp. BH72 which allows to quantify and visualize epi- and endophytic gene expression by concfocal microscopy (CLSM). This allowed us to demonstrate sites of active nitrogen fixation (gene expression) in association with rice roots. We confirmed that at low nitrogen fertilizer levels, endophytic nifH gene expression persisted in rice roots, while it was repressed in maize roots. This supports our observation of remarkable stability of nitrogen fixation

  9. 78 FR 28801 - Foreign-Trade Zone 117-Orange, TX, Authorization of Production Activity, Signal International...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-16

    ... notice in the Federal Register inviting public comment (78 FR 4383, 1-22-2013). The FTZ Board has... Foreign-Trade Zones Board Foreign-Trade Zone 117--Orange, TX, Authorization of Production Activity, Signal International Texas GP, LLC (Shipbuilding), Orange, TX On January 10, 2013, the Foreign Trade Zone of...

  10. 78 FR 4383 - Foreign-Trade Zone 117-Orange, Texas; Notification of Proposed Production Activity; Signal...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-22

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 117--Orange, Texas; Notification of Proposed Production Activity; Signal International Texas GP, LLC (Shipbuilding), Orange, TX The Foreign Trade Zone of Southeast Texas, Inc., grantee of FTZ 117, submitted...

  11. 33 CFR 3.70-20 - Activities Far East Marine Inspection Zone.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Activities Far East Marine Inspection Zone. 3.70-20 Section 3.70-20 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY GENERAL COAST GUARD AREAS, DISTRICTS, SECTORS, MARINE INSPECTION ZONES, AND CAPTAIN OF THE PORT ZONES Fourteenth Coast Guard District...

  12. Distributed Anelastic Strain and its Relationship to Compliant Zones Surrounding Active Faults of the Eastern California Shear Zone

    NASA Astrophysics Data System (ADS)

    Shelef, E.; Oskin, M.; Fialko, Y.

    2006-12-01

    Geologic measurements of distributed anelastic strain (DAS) adjacent to active strike slip faults of the Mojave Desert portion of the Eastern California shear zone quantify the magnitude, mechanism, temporal evolution, and relationship of DAS to fault compliant zones imaged via InSAR. Prefaulting markers (mylonitic lineation, dikes, and faults assumed linear prior to dextral faulting) in crystalline rocks next to the Harper Lake fault and Calico fault indicate that DAS accounts for 6 to 23 percent of total displacement and that this displacement scales with fault slip. We conclude that DAS is a significant, active process that is not restricted to the initial fault propagation stage. We find that the width of the zone of DAS is 400-700 m on each side of the faults studied, irrespective of total fault slip. 60 percent of the displacement due to DAS occurs within 100 m of the Calico fault. A similar zone of more intense deformation occurs adjacent to the Harper Lake fault. These 100m- wide-zones are of the same extent but much less intensely deformed compared to the damage zones surrounding the San Andreas fault. Based on these relationships, we hypothesize that damage feedback progressively focuses DAS into a stable, approximately 100-m-wide-zone where its intensity can increase proportionally to fault slip. Disruption of linear markers supports that DAS in crystalline rocks occurs via slip along secondary faults and small-scale block rotation with block sizes decreasing with proximity to faults. The widths of the geologically documented zones of DAS in the Eastern California shear zone are similar to the approximately 1 km width of compliant zones modeled from InSAR observations of surface deformation due to stress changes caused by nearby earthquakes. This correlation suggests a relationship between damage- reduction of shear modulus and displacement via DAS. Paleomagnetic measurements of prefaulting and syntectonically emplaced volcanic rocks in sedimentary

  13. An updated model for nitrate uptake modelling in plants. II. Assessment of active root involvement in nitrate uptake based on integrated root system age: measured versus modelled outputs

    PubMed Central

    Malagoli, Philippe; Le Deunff, Erwan

    2014-01-01

    Background and Aims An updated version of a mechanistic structural–functional model was developed to predict nitrogen (N) uptake throughout the growth cycle by a crop of winter oilseed rape, Brassica napus, grown under field conditions. Methods The functional component of the model derives from a revisited conceptual framework that combines the thermodynamic Flow–Force interpretation of nitrate uptake isotherms and environmental and in planta effects on nitrate influx. Estimation of the root biomass (structural component) is based upon a combination of root mapping along the soil depth profile in the field and a relationship between the specific root length and external nitrate concentration. The root biomass contributing actively to N uptake was determined by introduction of an integrated root system age that allows assignment of a root absorption capacity at a specific age of the root. Key Results Simulations were well matched to measured data of N taken up under field conditions for three levels of N fertilization. The model outputs indicated that the two topsoil layers (0–30 and 30–60 cm) contained 75–88 % of the total root length and biomass, and accounted for 90–95 % of N taken up at harvest. Conclusions This conceptual framework provides a model of nitrate uptake that is able to respond to external nitrate fluctuations at both functional and structural levels. PMID:24709791

  14. An updated model for nitrate uptake modelling in plants. II. Assessment of active root involvement in nitrate uptake based on integrated root system age: measured versus modelled outputs.

    PubMed

    Malagoli, Philippe; Le Deunff, Erwan

    2014-05-01

    Background and Aims An updated version of a mechanistic structural-functional model was developed to predict nitrogen (N) uptake throughout the growth cycle by a crop of winter oilseed rape, Brassica napus, grown under field conditions. Methods The functional component of the model derives from a revisited conceptual framework that combines the thermodynamic Flow-Force interpretation of nitrate uptake isotherms and environmental and in planta effects on nitrate influx. Estimation of the root biomass (structural component) is based upon a combination of root mapping along the soil depth profile in the field and a relationship between the specific root length and external nitrate concentration. The root biomass contributing actively to N uptake was determined by introduction of an integrated root system age that allows assignment of a root absorption capacity at a specific age of the root. Key Results Simulations were well matched to measured data of N taken up under field conditions for three levels of N fertilization. The model outputs indicated that the two topsoil layers (0-30 and 30-60 cm) contained 75-88 % of the total root length and biomass, and accounted for 90-95 % of N taken up at harvest. Conclusions This conceptual framework provides a model of nitrate uptake that is able to respond to external nitrate fluctuations at both functional and structural levels. PMID:24709791

  15. Conditioning of Roots with Hypoxia Increases Aluminum and Acid Stress Tolerance by Mitigating Activation of K+ Efflux Channels by ROS in Barley: Insights into Cross-Tolerance Mechanisms.

    PubMed

    Ma, Yanling; Zhu, Min; Shabala, Lana; Zhou, Meixue; Shabala, Sergey

    2016-01-01

    Aluminum (Al) is prevalent in soils, but Al toxicity is manifested only under acid conditions. It causes severe damages to the root system. Short-term waterlogging stress can occur simultaneously with Al toxicity in areas with high rainfall or an inappropriate irrigation pattern. Barley (Hordeum vulgare L.) is one of the most Al-sensitive small-grained cereals. In this work, we have investigated effects of short-term treatments with hypoxia and phenolic acid (two major constraints in waterlogged soils) on root sensitivity to low-pH and Al stresses. We showed that hypoxia-primed roots maintained higher cell viability when exposed to low-pH/Al stress, in both elongation and mature root zones, and possessed superior ability to retain K(+) in response to low-pH/Al stresses. These priming effects were not related to higher H(+)-ATPase activity and better membrane potential maintenance, and could not be explained by the increased expression levels of HvHAK1, which mediates high-affinity K(+) uptake in roots. Instead, hypoxia-conditioned roots were significantly less sensitive to H2O2 treatment, indicated by the 10-fold reduction in the magnitude of K(+) efflux changes. This suggested that roots pre-treated with hypoxia desensitized reactive oxygen species (ROS)-inducible K(+) efflux channels in root epidermis, most probably via enhanced antioxidative capacity. A possible role for Ca(2+) in stress-induced ROS signaling pathways is also discussed. Overall, our results report, for the first time, the phenomenon of cross-protection between hypoxia and low-pH/Al stresses, and causally link it to the cell's ability to maintain cytosolic K(+) homeostasis. PMID:26581863

  16. Pb-inhibited mitotic activity in onion roots involves DNA damage and disruption of oxidative metabolism.

    PubMed

    Kaur, Gurpreet; Singh, Harminder Pal; Batish, Daizy Rani; Kohli, Ravinder Kumar

    2014-09-01

    Plant responses to abiotic stress significantly affect the development of cells, tissues and organs. However, no studies correlating Pb-induced mitotic inhibition and DNA damage and the alterations in redox homeostasis during root division per se were found in the literature. Therefore, an experiment was conducted to evaluate the impact of Pb on mitotic activity and the associated changes in the oxidative metabolism in onion roots. The cytotoxic effect of Pb on cell division was assessed in the root meristems of Allium cepa (onion). The mitotic index (MI) was calculated and chromosomal abnormalities were sought. Pb-treatment induced a dose-dependent decrease in MI in the onion root tips and caused mitotic abnormalities such as distorted metaphase, fragments, sticky chromosomes, laggards, vagrant chromosomes and bridges. Single Cell Gel Electrophoresis was also performed to evaluate Pb induced genotoxicity. It was accompanied by altered oxidative metabolism in the onion root tips suggesting the interference of Pb with the redox homeostasis during cell division. There was a higher accumulation of malondialdehyde, conjugated dienes and hydrogen peroxide, and a significant increase in the activities of superoxide dismutases, ascorbate peroxidases, guaiacol peroxidases and glutathione reductases in Pb-treated onion roots, whereas catalases activity exhibited a decreasing pattern upon Pb exposure. The study concludes that Pb-induced cytotoxicity and genotoxicity in the onion roots is mediated through ROS and is also tightly linked to the cell cycle. The exposure to higher concentrations arrested cell cycle leading to cell death, whereas different repair responses are generated at lower concentrations, thereby allowing the cell to complete the cell cycle. PMID:25023386

  17. Regulation of nitrogen uptake and assimilation: Effects of nitrogen source, root-zone pH, and aerial CO2 concentration on growth and productivity of soybeans

    NASA Technical Reports Server (NTRS)

    Raper, C. D.; Tolley-Henry, L.

    1989-01-01

    An important feature of controlled-environment crop production systems such as those to be used for life support of crews during space exploration is the efficient utilization of nitrogen supplies. Making decisions about the best sources of these supplies requires research into the relationship between nitrogen source and the physiological processes which regulate vegetative and reproductive plant growth. Work done in four areas within this research objective is reported: (1) experiments on the effects of root-zone pH on preferential utilization of NO3(-) versus NH4(+) nitrogen; (2) investigation of processes at the whole-plant level that regulate nitrogen uptake; (3) studies of the effects of atmospheric CO2 and NO3(-) supply on the growth of soybeans; and (4) examination of the role of NO3(-) uptake in enhancement of root respiration.

  18. Antifungal and cytotoxic activities of Nannorrhops ritchiana roots extract.

    PubMed

    Rashid, Rehana; Mukhtar, Farah; Khan, Abida

    2014-01-01

    This atudy was designed to evaluate the antifungal and cytotoxic activities of the Nannorrhops ritchiana (Mazari Palm) 80% methanol extract (NR-M) and its four crude extracts i.e., petroleum ether (NR-A), dichloromethane (NR-B), ethyl acetate (NR-C) and butanol (NR-D). The antifungal activity was determined by agar tube dilution method against nine fungal strains; Aspergillus flavus, Trichophyton longifusis, Trichophyton mentagrophytes, Aspergillus flavus and Microsporum canis were susceptible to the extracts with percentage inhibition of (70-80%). Extracts exhibited significant and good antifungal activity against various fungal strains. The results were deduced by comparing with those for miconazole, amphotericin B and ketoconazole as standard drugs. The fractions of methanolic extract were assayed for their brine shrimp cytotoxic activity. They exhibited low toxicity with LC50 values ranging from 285.7 to 4350.75 μg/mL at the concentration of obtained results warrant follow up through bioassay guided isolation of the active principles, future antiinfectious research. PMID:25362807

  19. Activity and isoforms of peroxidases, lignin and anatomy, during adventitious rooting in cuttings of Ebenus cretica L.

    PubMed

    Syros, Thomas; Yupsanis, Traianos; Zafiriadis, Helias; Economou, Athanasios

    2004-01-01

    Adventitious rooting of Ebenus cretica cuttings was studied in order to examine a) the rooting ability of different genotypes in relation to electrophoretic patterns of peroxidases. b) the activity and electrophoretic patterns of soluble and wall ionically bound peroxidases, the lignin content and anatomical changes in the control and IBA treated cuttings of <rooting> and rooting> genotypes in the course of adventitious root formation. In addition, a fraction of soluble cationic peroxidases was separated by gel filtration chromatography from the total soluble peroxidases of a <rooting> genotype. No rooting occurred in cuttings without IBA-treatment. In both genotypes, electrophoretic patterns of soluble anionic peroxidases revealed two common peroxidase isoforms, while a fast-migrating anionic peroxidase isoform (A3) appeared only in <rooting> genotypes. Both genotypes showed similar patterns of soluble, as well as wall ionically bound cationic peroxidase isoforms. The number of isoforms was unchanged during the rooting process (induction, initiation and expression phase) but an increase in peroxidase activity (initiation phase) followed by decrease has been found in IBA-treated cuttings. During initiation phase the lignin content was almost similar to that on day 0 in <rooting> genotype while it was reduced at by about 50% in rooting> genotype at the respective time. Microscopic observations revealed anatomical differences between genotypes. According to this study, the <rooting> and rooting> genotypes display differences in anatomy, lignin content, activity of soluble peroxidases and the electrophoretic patterns of soluble anionic peroxidase isoforms. The A3-anionic peroxidase isoform could be used as biochemical marker to distinguish <rooting> and rooting> genotypes of E. cretica and seems to be correlated to lignin synthesis in rooting process. PMID:15002666

  20. Photo-activated disinfection of the root canal: a new role for lasers in endodontics.

    PubMed

    Lee, Michael T; Bird, Philip S; Walsh, Laurence J

    2004-12-01

    Because micro-organisms play a crucial role in the development of pulpal and periapical disease, the prognosis of endodontic therapy is intimately related to the presence of bacteria within the root canal system. Micro-organisms may persist in the apical region of the root canal system despite chemomechanical preparation. The usefulness of Class IV lasers (such as Nd:YAG, diode, KTP and Er:YAG) for photo-thermal disinfection of the root canal has been demonstrated in numerous studies. An alternative approach to microbial killing in the root canal system by laser light involves the use of low-power lasers to drive a photochemical reaction that produces reactive oxygen species, a technique termed photo-activated disinfection (PAD). By using exogenous photosensitisers such as tolonium chloride, killing of all types of bacteria can be achieved. In vitro studies of PAD have demonstrated its ability to kill photosensitised oral bacteria (such as E. faecalis), and more recently microbial killing in vivo in the root canal system has been demonstrated. While PAD can be undertaken as part of the routine disinfection of the root canal system, it also has potential use for eradicating persistent endodontic infections for which conventional methods have been unsuccessful. PMID:15633797

  1. Antioxidant and Nephroprotective Activities of Aconitum heterophyllum Root in Glycerol Induced Acute Renal Failure in Rats

    PubMed Central

    Eerike, Madhavi; Raghuraman, Lakshmipathy Prabhu; Rajamanickam, Maignana Kumar

    2016-01-01

    Aim The present study was to evaluate the antioxidant and nephroprotective activities of ethanolic extract of Aconitum heterophyllum root (EEAHR) in glycerol induced acute renal failure (ARF) in Wistar albino rats. Materials and Methods In vitro antioxidant activity of EEAHR was assessed using the 2, 2-diphenyl-picrylhydrazyl (DPPH assay), nitric oxide radical scavenging (NO assay), hydrogen peroxide (H2O2 assay) and ferric reducing antioxidant power (FRAP) scavenging activity assays. In vivo study, rats were divided into four groups of six each for assessing the nephroprotective activity. Group-1 received normal saline, group-2 received 50% glycerol (10 ml/kg) alone, group-3 received glycerol and 250 mg/kg of EEAHR and group-4 received glycerol and 500 mg/kg of EEAHR. The renal injury and recovery was measured by serum creatinine, blood urea nitrogen (BUN), total proteins, albumin, urine output and histopathological changes. Results In vitro antioxidant activity of root extract was found to be equal to Vitamin C and in an in vivo study root extract treated animals showed significant attenuation of biochemical parameters and histopathological changes of the kidney compared to glycerol treated group and it was found to be more significant with the extract at 500 mg/kg than 250mg/kg. Conclusion The present study revealed that Aconitum heterophyllum root has shown antioxidant and nephroprotective activities. PMID:27134892

  2. Termiticidal activity of diterpenes from the roots of Euphorbia kansui.

    PubMed

    Shi, Jianxiao; Li, Zhixuan; Izumi, Minoru; Baba, Naomichi; Nakajima, Shuhei

    2008-01-01

    Five ingenane compounds, 1-5, kansuinins A and B, isolated from Euphorbia kansui, and their derivatives 7 and 9 were tested for termiticidal activity against the Japanese termite, Reticulitermes speratus. At 72 hours after treatment, the ingenane compounds 1 to 5 caused 100% mortality in R. speratus at 50, 25 and 12.5 microg/disk, respectively, except for compound 1, which gave a mortality rate of (93.06 +/- 5.56)% at 12.5 microg/disk. At 36, 48 and 60 hours after treatment, compounds 1 to 5 showed more termiticidal activity than kansuinins A and B and their derivatives. The kansuinins showed no or only slight activity against termites in the filter paper bioassay under the conditions tested compared with a solvent control. PMID:18386488

  3. Comparative effects of deficit irrigation and alternate partial root-zone irrigation on xylem pH, ABA and ionic concentrations in tomatoes

    PubMed Central

    Wang, Yaosheng; Liu, Fulai; Jensen, Christian Richardt

    2012-01-01

    Comparative effects of partial root-zone irrigation (PRI) and deficit irrigation (DI) on xylem pH, ABA, and ionic concentrations of tomato (Lycopersicon esculentum L.) plants were investigated in two split-root pot experiments. Results showed that PRI plants had similar or significantly higher xylem pH, which was increased by 0.2 units relative to DI plants. Nitrate and total ionic concentrations (cations+anions), and the proportion of cations influenced xylem pH such that xylem pH increases as nitrate and total ionic concentrations decrease, and the proportion of cations increases. In most cases, the xylem ABA concentration was similar for PRI and DI plants, and a clear association between increases in xylem pH with increasing xylem ABA concentration was only found when the soil water content was relatively low. The concentrations of anions, cations, and the sum of anions and cations in PRI were higher than in the DI treatment when soil water content was relatively high in the wetted soil compartment. However, when water content in both soil compartments of the PRI pots were very low before the next irrigation, the acquisition of nutrients by roots was reduced, resulting in lower concentrations of anions and cations in the PRI than in the DI treatment. It is therefore essential that the soil water content in the wet zone should be maintained relatively high while that in the drying soil zone should not be very low, both conditions are crucial to maintain high soil and plant water status while sustaining ABA signalling of the plants. PMID:22162869

  4. Relations between Root-zone Soil Moisture and MODIS-derived Vegetation Indices in Oak savanna and Open Grassland in California

    NASA Astrophysics Data System (ADS)

    Liu, S.; Chadwick, O.; Roberts, D.

    2008-12-01

    Optical remote sensing cannot provide direct quantification of soil moisture, but here we test the idea that plant available soil moisture can be inferred through calibration of images that quantify plant-leaf water and photosynthetic relationships. We measured relationships between volumetric soil water content in the rooting zone of annual grasslands and oak savanna and six vegetation indices (VIs) derived from MODIS data (NDVI, EVI, ARVI, SAVI,VARI and NDWI). The measured sites were part of the AmeriFlux network in California: Tonzi Ranch (oak savanna)and Vaira Ranch(open grassland). To reduce the empirical effect of linking vegetation indices to soil moisture directly, measured gross primary production (GPP) was used to bridge them. The results showed that (1) VARI was most sensitive to soil moisture variations; (2) in open grassland GPP is significantly controlled by the available water in the soil but the relationship is not linear----- GPP continues to increase in the growing season as long as soil moisture is sufficient. In oak savanna, the relationship is less obvious because oak trees can exploit water in deep soil layers. The results also demonstrated a strong linear relationship between GPP and vegetation indices for both oak savanna and open grassland. Therefore, based on the relation between GPP and root-zone soil moisture and the relation between GPP and VI, we estimated soil moisture as a function of a VI. Likely, the functional parameters are dependent on vegetation types, soil texture and topography. In order to explore the sensitivity of this relationship in areas where soil moisture and vegetation production data are not available, we will use DayCENTURY and ISOLSM models to simulate soil moisture and primary production at instrumented sites with meteorological data and soil properties data. The simulation tested in Tonzi Ranch and Vaira Ranch suggest that we can estimate root-zone soil moisture with optical remotely sensed data at large scale.

  5. Partial root-zone drying and conventional deficit irrigation applied during the whole berry growth maintain yield and berry quality in 'Crimson Seedless' table grapes

    NASA Astrophysics Data System (ADS)

    Pérez-Pastor, Alejandro; Domingo, Rafael; De la Rosa, Jose M.°; Rosario Conesa Saura, M.°

    2016-04-01

    To compare the effects of partial root-zone drying and conventional deficit irrigation applied during post-veraison and the whole berry growth on water relations, yield and berry quality, one experiment was conducted in a commercial vineyard of 'Crimson Seedless' table grapes. Five irrigation treatments were imposed: (i) Control (CTL) irrigated to 110% of crop evapotranspiration (ETc), (ii) regulated deficit irrigation (RDI) irrigated at 50% of CTL during the non- critical period of post-verasion, (iii) continuous deficit irrigation (DIc), irrigated at 50% of CTL throughout the whole berry growing season, (iv) partial root-zone drying (PRD), irrigated similar to RDI, but alternating the irrigation applied in the dry side every 10-14 days; and (v) continuous partial root-zone drying (PRDc), irrigated as DIc but alternating the irrigation in the dry side every 10-14 days. RDI and PRD received 24% and 28% less water than CTL, respectively. These reductions were higher in DIc and PRDc (65% and 53%, respectively). Total yield was not affected by any DI strategy. Only significantly lower values were observed in the weight and height's berries in respect to CTL. However, the colour parameters evaluated increased in all DI treatments, being slightly higher in DIc and PRDc compared with RDI and PRD. In addition, total soluble solids (TSS) were significantly higher in DIc, compared to other irrigated counterparts. Our findings showed that the application of water deficit during the whole berry growth through the use of DIc and PRDc, can be considered for irrigation scheduling in 'Crimson Seedless' table grapes. Acknowledgements This work has been funded by the European Union LIFE+ project IRRIMAN (LIFE13 ENV/ES/000539).

  6. Shallow Subsurface Soil Moisture Dynamics in the Root-Zone and Bulk Soil of Sparsely Vegetated Land Surfaces as Impacted by Near-Surface Atmospheric State

    NASA Astrophysics Data System (ADS)

    Trautz, A.; Illangasekare, T. H.; Tilton, N.

    2015-12-01

    Soil moisture is a fundamental state variable that provides the water necessary for plant growth and evapotranspiration. Soil moisture has been extensively studied in the context of bare surface soils and root zones. Less attention has focused on the effects of sparse vegetation distributions, such as those typical of agricultural cropland and other natural surface environments, on soil moisture dynamics. The current study explores root zone, bulk soil, and near-surface atmosphere interactions in terms of soil moisture under different distributions of sparse vegetation using multi-scale laboratory experimentation and numerical simulation. This research is driven by the need to advance our fundamental understanding of soil moisture dynamics in the context of improving water conservation and next generation heat and mass transfer numerical models. Experimentation is performed in a two-dimensional 7.3 m long intermediate scale soil tank interfaced with a climate-controlled wind tunnel, both of which are outfitted with current sensor technologies for measuring atmospheric and soil variables. The soil tank is packed so that a sparsely vegetated soil is surrounded by bulk bare soil; the two regions are separated by porous membranes to isolate the root zone from the bulk soil. Results show that in the absence of vegetation, evaporation rates vary along the soil tank in response to longitudinal changes in humidity; soil dries fastest upstream where evaporation rates are highest. In the presence of vegetation, soil moisture in the bulk soil closest to a vegetated region decreases more rapidly than the bulk soil farther away. Evapotranspiration rates in this region are also higher than the bulk soil region. This study is the first step towards the development of more generalized models that account for non-uniformly distributed vegetation and land surfaces exhibiting micro-topology.

  7. DYNAMICS OF NASCENT AND ACTIVE ZONE ULTRASTRUCTURE AS SYNAPSES ENLARGE DURING LTP IN MATURE HIPPOCAMPUS

    PubMed Central

    Bell, Maria Elizabeth; Bourne, Jennifer N.; Chirillo, Michael A.; Mendenhall, John M.; Kuwajima, Masaaki; Harris, Kristen M.

    2014-01-01

    Nascent zones and active zones are adjacent synaptic regions that share a postsynaptic density, but nascent zones lack the presynaptic vesicles found at active zones. Here dendritic spine synapses were reconstructed through serial section electron microscopy (3DEM) and EM tomography to investigate nascent zone dynamics during long-term potentiation (LTP) in mature rat hippocampus. LTP was induced with theta-burst stimulation and comparisons were made to control stimulation in the same hippocampal slices at 5 minutes, 30 minutes, and 2 hours post-induction and to perfusion-fixed hippocampus in vivo. Nascent zones were present at the edges of ~35% of synapses in perfusion-fixed hippocampus and as many as ~50% of synapses in some hippocampal slice conditions. By 5 minutes, small dense core vesicles known to transport active zone proteins moved into more presynaptic boutons. By 30 minutes, nascent zone area decreased without significant change in synapse area, suggesting that presynaptic vesicles were recruited to pre-existing nascent zones. By 2 hours, both nascent and active zones were enlarged. Immunogold labeling revealed that glutamate receptors can be found in nascent zones; however, average distances from nascent zones to docked presynaptic vesicles ranged from 170±5 nm in perfusion-fixed hippocampus to 251±4 nm at enlarged synapses by 2 hours during LTP. Prior stochastic modeling suggests that falloff in glutamate concentration reduces the probability of glutamate receptor activation from 0.4 at the center of release to 0.1 just 200 nm away. Thus, conversion of nascent zones to functional active zones likely requires the recruitment of presynaptic vesicles during LTP. PMID:25043676

  8. Genotypical Differences in Aluminum Resistance of Maize Are Expressed in the Distal Part of the Transition Zone. Is Reduced Basipetal Auxin Flow Involved in Inhibition of Root Elongation by Aluminum?1

    PubMed Central

    Kollmeier, Malte; Felle, Hubert H.; Horst, Walter J.

    2000-01-01

    Short-term Al treatment (90 μm Al at pH 4.5 for 1 h) of the distal transition zone (DTZ; 1–2 mm from the root tip), which does not contribute significantly to root elongation, inhibited root elongation in the main elongation zone (EZ; 2.5–5 mm from the root tip) to the same extent as treatment of the entire maize (Zea mays) root apex. Application of Al to the EZ had no effect on root elongation. Higher genotypical resistance to Al applied to the entire root apex, and specifically to the DTZ, was expressed by less inhibition of root elongation, Al accumulation, and Al-induced callose formation, primarily in the DTZ. A characteristic pH profile along the surface of the root apex with a maximum of pH 5.3 in the DTZ was demonstrated. Al application induced a substantial flattening of the pH profile moreso in the Al-sensitive than in the Al-resistant cultivar. Application of indole-3-acetic acid to the EZ but not to the meristematic zone significantly alleviated the inhibition of root elongation induced by the application of Al to the DTZ. Basipetal transport of exogenously applied [3H]indole-3-acetic acid to the meristematic zone was significantly inhibited by Al application to the DTZ in the Al-sensitive maize cv Lixis. Our results provide evidence that the primary mechanisms of genotypical differences in Al resistance are located within the DTZ, and suggest a signaling pathway in the root apex mediating the Al signal between the DTZ and the EZ through basipetal auxin transport. PMID:10712559

  9. Genotypical differences in aluminum resistance of maize are expressed in the distal part of the transition zone. Is reduced basipetal auxin flow involved in inhibition of root elongation by aluminum?

    PubMed

    Kollmeier, M; Felle, H H; Horst, W J

    2000-03-01

    Short-term Al treatment (90 microM Al at pH 4.5 for 1 h) of the distal transition zone (DTZ; 1-2 mm from the root tip), which does not contribute significantly to root elongation, inhibited root elongation in the main elongation zone (EZ; 2.5-5 mm from the root tip) to the same extent as treatment of the entire maize (Zea mays) root apex. Application of Al to the EZ had no effect on root elongation. Higher genotypical resistance to Al applied to the entire root apex, and specifically to the DTZ, was expressed by less inhibition of root elongation, Al accumulation, and Al-induced callose formation, primarily in the DTZ. A characteristic pH profile along the surface of the root apex with a maximum of pH 5.3 in the DTZ was demonstrated. Al application induced a substantial flattening of the pH profile moreso in the Al-sensitive than in the Al-resistant cultivar. Application of indole-3-acetic acid to the EZ but not to the meristematic zone significantly alleviated the inhibition of root elongation induced by the application of Al to the DTZ. Basipetal transport of exogenously applied [(3)H]indole-3-acetic acid to the meristematic zone was significantly inhibited by Al application to the DTZ in the Al-sensitive maize cv Lixis. Our results provide evidence that the primary mechanisms of genotypical differences in Al resistance are located within the DTZ, and suggest a signaling pathway in the root apex mediating the Al signal between the DTZ and the EZ through basipetal auxin transport. PMID:10712559

  10. Identification and quantification of the main active anticancer alkaloids from the root of Glaucium flavum.

    PubMed

    Bournine, Lamine; Bensalem, Sihem; Wauters, Jean-Noël; Iguer-Ouada, Mokrane; Maiza-Benabdesselam, Fadila; Bedjou, Fatiha; Castronovo, Vincent; Bellahcène, Akeila; Tits, Monique; Frédérich, Michel

    2013-01-01

    Glaucium flavum is used in Algerian folk medicine to remove warts (benign tumors). Its local appellations are Cheqiq el-asfar and Qarn el-djedyane. We have recently reported the anti-tumoral activity of Glaucium flavum root alkaloid extract against human cancer cells, in vitro and in vivo. The principal identified alkaloid in the extract was protopine. This study aims to determine which component(s) of Glaucium flavum root extract might possess potent antitumor activity on human cancer cells. Quantitative estimation of Glaucium flavum alkaloids was realized by HPLC-DAD. Glaucium flavum effect on human normal and cancer cell viability was determined using WST-1 assay. Quantification of alkaloids in Glaucium flavum revealed that the dried root part contained 0.84% of protopine and 0.07% of bocconoline (w/w), while the dried aerial part contained only 0.08% of protopine, glaucine as the main alkaloid, and no bocconoline. In vitro evaluation of the growth inhibitory activity on breast cancer and normal cells demonstrated that purified protopine did not reproduce the full cytotoxic activity of the alkaloid root extract on cancer cell lines. On the other hand, bocconoline inhibited strongly the viability of cancer cells with an IC50 of 7.8 µM and only a low cytotoxic effect was observed against normal human cells. Our results showed for the first time that protopine is the major root alkaloid of Glaucium flavum. Finally, we are the first to demonstrate a specific anticancer effect of Glaucium flavum root extract against breast cancer cells, which can be attributed, at least in part, to bocconoline. PMID:24317429

  11. Identification and Quantification of the Main Active Anticancer Alkaloids from the Root of Glaucium flavum

    PubMed Central

    Bournine, Lamine; Bensalem, Sihem; Wauters, Jean-Noël; Iguer-Ouada, Mokrane; Maiza-Benabdesselam, Fadila; Bedjou, Fatiha; Castronovo, Vincent; Bellahcène, Akeila; Tits, Monique; Frédérich, Michel

    2013-01-01

    Glaucium flavum is used in Algerian folk medicine to remove warts (benign tumors). Its local appellations are Cheqiq el-asfar and Qarn el-djedyane. We have recently reported the anti-tumoral activity of Glaucium flavum root alkaloid extract against human cancer cells, in vitro and in vivo. The principal identified alkaloid in the extract was protopine. This study aims to determine which component(s) of Glaucium flavum root extract might possess potent antitumor activity on human cancer cells. Quantitative estimation of Glaucium flavum alkaloids was realized by HPLC-DAD. Glaucium flavum effect on human normal and cancer cell viability was determined using WST-1 assay. Quantification of alkaloids in Glaucium flavum revealed that the dried root part contained 0.84% of protopine and 0.07% of bocconoline (w/w), while the dried aerial part contained only 0.08% of protopine, glaucine as the main alkaloid, and no bocconoline. In vitro evaluation of the growth inhibitory activity on breast cancer and normal cells demonstrated that purified protopine did not reproduce the full cytotoxic activity of the alkaloid root extract on cancer cell lines. On the other hand, bocconoline inhibited strongly the viability of cancer cells with an IC50 of 7.8 μM and only a low cytotoxic effect was observed against normal human cells. Our results showed for the first time that protopine is the major root alkaloid of Glaucium flavum. Finally, we are the first to demonstrate a specific anticancer effect of Glaucium flavum root extract against breast cancer cells, which can be attributed, at least in part, to bocconoline. PMID:24317429

  12. Key role of Upper Mantle rocks in Alpine type orogens: some speculations derived from extensional settings for subduction zone processes and mountain roots

    NASA Astrophysics Data System (ADS)

    Müntener, Othmar

    2016-04-01

    Orogenic architecture and mountain roots are intrinsically related. Understanding mountain roots largely depends on geophysical methods and exhumed high pressure and high temperature rocks that might record snapshots of the temporal evolution at elevated pressure, temperatures and/or fluid pulses. If such high pressure rocks represent ophiolitic material they are commonly interpreted as exhumed remnants of some sort of 'mid-ocean ridge' processes. Mantle peridotites and their serpentinized counterparts thus play a key role in understanding orogenic architecture as they are often considered to track suture zones or ancient plate boundaries. The recognition that some mantle peridotites and their serpentinized counterparts are derived from ocean-continent transition zones (OCT's) or non-steady state (ultra-)slow plate separation systems question a series of 'common beliefs' that have been applied to understand Alpine-type collisional orogens in the framework of the ophiolite concept. Among these are: (i) the commonly held assumption of a simple genetic link between mantle melting and mafic (MORB-type) magmatism, (ii) the commonly held assumption that mélange zones represent deep subduction zone processes at the plate interface, (iii) that pre-collisional continental crust and oceanic crust can easily be reconstructed to their original thickness and used for reconstructions of the size of small subducted oceanic basins as geophysical data from rifted margins increasingly indicate that continental crust is thinned to much less than the average 30-35 kilometers over a large area that might be called the 'zone of hyperextension', and (iv) the lack of a continuous sheet of mafic oceanic crust and the extremely short time interval of formation results in a lack of 'eclogitization potential' during convergence and hence a lack of potential for subsequent slab pull and, perhaps, a lack of potential for 'slab-breakoff'. Here we provide a synopsis of mantle rocks from the

  13. Antioxidative and in vitro antiproliferative activity of Arctium lappa root extracts

    PubMed Central

    2011-01-01

    Background Arctium lappa, known as burdock, is widely used in popular medicine for hypertension, gout, hepatitis and other inflammatory disorders. Pharmacological studies indicated that burdock roots have hepatoprotective, anti-inflammatory, free radical scavenging and antiproliferative activities. The aim of this study was to evaluate total phenolic content, radical scavenging activity by DPPH and in vitro antiproliferative activity of different A. lappa root extracts. Methods Hot and room temperature dichloromethanic, ethanolic and aqueous extracts; hydroethanolic and total aqueous extract of A. lappa roots were investigated regarding radical scavenging activity by DPPH, total phenolic content by Folin-Ciocalteau method and antiproliferative in vitro activity was evaluated in human cancer cell lines. The hydroethanolic extract analyzed by high-resolution electrospray ionization mass spectroscopy. Results Higher radical scavenging activity was found for the hydroethanolic extract. The higher phenolic contents were found for the dichloromethane, obtained both by Soxhlet and maceration extraction and hydroethanolic extracts. The HRESI-MS demonstrated the presence of arctigenin, quercetin, chlorogenic acid and caffeic acid compounds, which were identified by comparison with previous data. The dichloromethane extracts were the only extracts that exhibited activity against cancer cell lines, especially for K562, MCF-7 and 786-0 cell lines. Conclusions The hydroethanolic extracts exhibited the strongest free radical scavenging activity, while the highest phenolic content was observed in Soxhlet extraction. Moreover, the dichloromethanic extracts showed selective antiproliferative activity against K562, MCF-7 and 786-0 human cancer cell lines. PMID:21429215

  14. Structure and seismic activity of the Lesser Antilles subduction zone

    NASA Astrophysics Data System (ADS)

    Evain, M.; Galve, A.; Charvis, P.; Laigle, M.; Ruiz Fernandez, M.; Kopp, H.; Hirn, A.; Flueh, E. R.; Thales Scientific Party

    2011-12-01

    Several active and passive seismic experiments conducted in 2007 in the framework of the European program "Thales Was Right" and of the French ANR program "Subsismanti" provided a unique set of geophysical data highlighting the deep structure of the central part of the Lesser Antilles subduction zone, offshore Dominica and Martinique, and its seismic activity during a period of 8 months. The region is characterized by a relatively low rate of seismicity that is often attributed to the slow (2 cm/yr) subduction of the old, 90 My, Atlantic lithosphere beneath the Caribbean Plate. Based on tomographic inversion of wide-angle seismic data, the forearc can clearly be divided into an inner forearc, characterised by a high vertical velocity gradient in the igneous crust, and an outer forearc with lower crustal velocity gradient. The thick, high velocity, inner forearc is possibly the extension at depth of the Mesozoic Caribbean crust outcropping in La Désirade Island. The outer forearc, up to 70 km wide in the northern part of the study area, is getting narrower to the south and disappears offshore Martinique. Based on its seismic velocity structure with velocities higher than 6 km/s the backstop consists, at least partly, of magmatic rocks. The outer forearc is also highly deformed and faulted within the subducting trend of the Tiburon Ridge. With respect to the inner forearc velocity structure the outer forearc basement could either correspond to an accreted oceanic terrane or made of highly fractured rocks. The inner forearc is a dense, poorly deformable crustal block, tilted southward as a whole. It acts as a rigid buttress increasing the strain within both the overriding and subducting plates. This appears clearly in the current local seismicity affecting the subducting and the overriding plates that is located beneath the inner forearc. We detected earthquakes beneath the Caribbean forearc and in the Atlantic oceanic plate as well. The main seismic activity is

  15. CNS depressant activities of roots of Coccos nucifera in mice.

    PubMed

    Pal, Dilipkumar; Sarkar, Abhijit; Gain, Sumanta; Jana, Sandip; Mandal, Soumit

    2011-01-01

    The ethanol extract of Coccos nucifera (EECN) was tested for possible pharmacological effects on experimental animals. EECN significantly potentiated the sleeping time of mice induced by standard hypnotics viz. pentobarbital sodium, diazepam, and meprobamate in a dose dependent manner. EECN showed significant analgesic properties as evidenced by the significant reduction in the number of writhes and stretches induced in mice by 1.2% acetic acid solution. It also potentiated analgesia induced by morphine and pethidine in mice. Pretreatment with EECN caused significant protection against pentylenetetrazole-induced convulsions. The behavioral studies on mice indicate CNS depressant activity of the ethanol extract of C. nucifera. PMID:21485298

  16. Chemical characterization and prebiotic activity of fructo-oligosaccharides from Stevia rebaudiana (Bertoni) roots and in vitro adventitious root cultures.

    PubMed

    Sanches Lopes, Sheila Mara; Francisco, Mariane Grigio; Higashi, Bruna; de Almeida, Rafaela Takako Ribeiro; Krausová, Gabriela; Pilau, Eduardo Jorge; Gonçalves, José Eduardo; Gonçalves, Regina Aparecida Correia; Oliveira, Arildo José Braz de

    2016-11-01

    Stevia rebaudiana (Bertoni) is widely studied because of its foliar steviol glycosides. Fructan-type polysaccharides were recently isolated from its roots. Fructans are reserve carbohydrates that have important positive health effects and technological applications in the food industry. The objective of the present study was to isolate and characterize fructo-oligosaccharides (FOSs) from S. rebaudiana roots and in vitro adventitious root cultures and evaluate the potential prebiotic effect of these molecules. The in vitro adventitious root cultures were obtained using a roller bottle system. Chemical analyses (gas chromatography-mass spectrometry, (1)H nuclear magnetic resonance, and off-line electrospray ionization-mass spectrometry) revealed similar chemical properties of FOSs that were obtained from the different sources. The potential prebiotic effects of FOSs that were isolated from S. rebaudiana roots enhanced the growth of both bifidobacteria and lactobacilli, with strains specificity in their fermentation ability. PMID:27516323

  17. Contemporary approaches to studying and mapping of active water exchange zone of ground water

    NASA Astrophysics Data System (ADS)

    Moraru, C. Ye

    2016-03-01

    The article deals with a zone of ground water active exchange. New principles of the zone study and mapping under the platform hydrogeological condition are discussed. The assessment and distribution techniques are suggested for the active water exchange zone under the condition of hydrogeological parameterization uncertainty. The efficiency and significance of the suggested techniques are proved using the example of ground water in the southwest of Black Sea artesian basin.

  18. CHARACTERIZATION OF CATALASE ACTIVITIES IN A ROOT-CLEANING ISOLATE OF PSEUDOMONAS PUTIDA

    EPA Science Inventory

    Psuedomonas putida, a saprophytic root-colonizing bacterium, produces multiple forms of catalase Catalase A which increases in specific activity during growth phase and after treatment with H2O2, is located in the and is inhibited by 3-amino-1,2-4-triazole, EDTA, and cyanide, but...

  19. Aluminum regulates oxalate secretion and plasma membrane H+-ATPase activity independently in tomato roots.

    PubMed

    Yang, Jian Li; Zhu, Xiao Fang; Peng, You Xiang; Zheng, Cheng; Ming, Feng; Zheng, Shao Jian

    2011-08-01

    We demonstrated that aluminum (Al)-induced oxalate secretion and plasma membrane (PM) H(+)-ATPase activity in tomato (Lycopersicon esculentum 'Hezuo903') roots were poorly correlated. In addition, vanadate, an inhibitor of PM H(+)-ATPase, had no effect on Al-induced oxalate secretion, but significantly inhibited enzyme activity. An anion channel inhibitor phenylglyoxal inhibited oxalate secretion, but not PM H(+)-ATPase activity. Exposure of tomato roots to 10 μM LaCl(3) also stimulated PM H(+)-ATPase activity; however, La failed to induce oxalate secretion. Furthermore, Al-induced changes of PM H(+)-ATPase activity were not associated with oxalate secretion in two tomato cultivars differing in the ability to secrete oxalate under Al stress. These results indicate that Al independently regulates oxalate secretion and PM H(+)-ATPase activity in tomato roots. Analysis of expression levels of PM H(+)-ATPase genes by real-time reverse transcription-PCR and protein by Western blot and immunodetection revealed that the regulation of PM H(+)-ATPase in response to Al was subjected to transcriptional and posttranscriptional control. However, since neither transcriptional level of genes nor translational level of proteins directly relate to the enzyme activity, posttranslational modification of PM H(+)-ATPase under Al stress likely contributes to changes in activity of this protein. PMID:21424534

  20. The SHORT-ROOT-like gene PtSHR2B is involved in Populus phellogen activity.

    PubMed

    Miguel, Andreia; Milhinhos, Ana; Novák, Ondřej; Jones, Brian; Miguel, Célia M

    2016-03-01

    SHORT-ROOT (SHR) is a GRAS transcription factor first characterized for its role in the specification of the stem cell niche and radial patterning in Arabidopsis thaliana (At) roots. Three SHR-like genes have been identified in Populus trichocarpa (Pt). PtSHR1 shares high similarity with AtSHR over the entire length of the coding sequence. The two other Populus SHR-like genes, PtSHR2A and PtSHR2B, are shorter in their 5' ends when compared with AtSHR. Unlike PtSHR1, that is expressed throughout the cambial zone of greenhouse-grown Populus trees, PtSHR2Bprom:uidA expression was detected in the phellogen. Additionally, PtSHR1 and PtSHR2B expression patterns markedly differ in the shoot apex and roots of in vitro plants. Transgenic hybrid aspen expressing PtSHR2B under the 35S constitutive promoter showed overall reduced tree growth while the proportion of bark increased relative to the wood. Reverse transcription-quantitative PCR (RT-qPCR) revealed increased transcript levels of cytokinin metabolism and response-related genes in the transgenic plants consistent with an increase of total cytokinin levels. This was confirmed by cytokinin quantification by LC-MS/MS. Our results indicate that PtSHR2B appears to function in the phellogen and therefore in the regulation of phellem and periderm formation, possibly acting through modulation of cytokinin homeostasis. Furthermore, this work points to a functional diversification of SHR after the divergence of the Populus and Arabidopsis lineages. This finding may contribute to selection and breeding strategies of cork oak in which, unlike Populus, the phellogen is active throughout the entire tree lifespan, being at the basis of a highly profitable cork industry. PMID:26709311

  1. 77 FR 68103 - Foreign-Trade Zone 163-Ponce, PR; Notification of Proposed Production Activity; Zimmer...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-15

    ... Foreign-Trade Zones Board Foreign-Trade Zone 163--Ponce, PR; Notification of Proposed Production Activity; Zimmer Manufacturing BV (Medical Devices); Ponce, PR CODEZOL, C.D., grantee of FTZ 163, submitted a notification of proposed production activity on behalf of Zimmer Manufacturing BV (Zimmer), located in...

  2. The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice.

    PubMed

    Zhao, Yu; Hu, Yongfeng; Dai, Mingqiu; Huang, Limin; Zhou, Dao-Xiu

    2009-03-01

    In rice (Oryza sativa), the shoot-borne crown roots are the major root type and are initiated at lower stem nodes as part of normal plant development. However, the regulatory mechanism of crown root development is poorly understood. In this work, we show that a WUSCHEL-related Homeobox (WOX) gene, WOX11, is involved in the activation of crown root emergence and growth. WOX11 was found to be expressed in emerging crown roots and later in cell division regions of the root meristem. The expression could be induced by exogenous auxin or cytokinin. Loss-of-function mutation or downregulation of the gene reduced the number and the growth rate of crown roots, whereas overexpression of the gene induced precocious crown root growth and dramatically increased the root biomass by producing crown roots at the upper stem nodes and the base of florets. The expressions of auxin- and cytokinin-responsive genes were affected in WOX11 overexpression and RNA interference transgenic plants. Further analysis showed that WOX11 directly repressed RR2, a type-A cytokinin-responsive regulator gene that was found to be expressed in crown root primordia. The results suggest that WOX11 may be an integrator of auxin and cytokinin signaling that feeds into RR2 to regulate cell proliferation during crown root development. PMID:19258439

  3. Comparison of EnKF and Particle Filter-based Assimilation Algorithms for Improved Estimation of Root-Zone Soil Moisture under Dynamic Vegetation Conditions

    NASA Astrophysics Data System (ADS)

    Nagarajan, K.; Monsivais-Huertero, A.; Judge, J.; Graham, W. D.

    2009-12-01

    Accurate knowledge of root-zone soil moisture (RZSM) is crucial in hydrology, micrometeorology, and agricultural research for estimating energy and moisture fluxes at the land surface. Coupled Soil Vegetation Atmosphere Transfer (SVAT) vegetation models are used to simulate these fluxes at the land surface and in the root zone over the growing season. However, these coupled models exhibit large uncertainties in RZSM estimates due to accumulation of errors in model formulation, computation, initialization, and forcings and due to unresolved heterogeneities in model parameters. Such uncertainties can be reduced by assimilating in situ or remotely sensed observations of soil moisture. In this study, two widely used assimilation algorithms namely, the Ensemble Kalman Filter (EnKF) and Particle Filter (PF) are compared to improve estimates of RZSM from a coupled SVAT-vegetation model during a growing season of sweet corn in North Central Florida. The two algorithms are used to assimilate both synthetic and field measurements of soil moisture from the MicroWEX-2 experiment at various spatio-temporal frequencies. Differences in the RZSM estimates between the two algorithms are evaluated for various update scenarios and forcing uncertainties. The impacts of several resampling strategies in PF on RZSM estimates are also investigated.

  4. Effects of Long-Term Irrigation with Treated Wastewater on Soil Properties and on Water and Air Regime in the Root Zone

    NASA Astrophysics Data System (ADS)

    Assouline, S.

    2011-12-01

    With increasing water scarcity, treated wastewater (TW) appears as an attractive alternative source of water for irrigation, especially in arid and semi-arid regions where freshwater is naturally scarce. However, it seems that long-term use of TW for irrigation cause to soil degradation and crop yield reduction. This study aims to describe and quantify changes in the soil properties and in the water and air regime in the root zone resulting from long-term use of TW for irrigation. Combining between analysis of data from a set of complementary laboratory experiments involving infiltration, evaporation, swelling and saturated hydraulic conductivity measurements, and HYDRUS simulations provide quantitative estimates of the negative impact of TW for irrigation on the soil properties. Such impact might affect the hydrological balance components at the field and the regional scale. Monitoring water and oxygen content at high temporal resolution in the field reveals significant effect of irrigation water quality on water and air regime in the root zone. This could affect both the agricultural and the ecosystem response of the upper soil layer.

  5. Impacts of aluminum on the cytoskeleton of the maize root apex. short-term effects on the distal part of the transition zone

    PubMed

    Sivaguru; Baluska; Volkmann; Felle; Horst

    1999-03-01

    Using monoclonal tubulin and actin antibodies, Al-mediated alterations to microtubules (MTs) and actin microfilaments (MFs) were shown to be most prominent in cells of the distal part of the transition zone (DTZ) of an Al-sensitive maize (Zea mays L.) cultivar. An early response to Al (1 h, 90 μM) was the depletion of MTs in cells of the DTZ, specifically in the outermost cortical cell file. However, no prominent changes to the MT cytoskeleton were found in elongating cells treated with Al for 1 h in spite of severe inhibition of root elongation. Al-induced early alterations to actin MFs were less dramatic and consisted of increased actin fluorescence of partially disintegrated MF arrays in cells of the DTZ. These tissue- and development-specific alterations to the cytoskeleton were preceded by and/or coincided with Al-induced depolarization of the plasma membrane and with callose formation, particularly in the outer cortex cells of the DTZ. Longer Al supplies (>6 h) led to progressive enhancements of lesions to the MT cytoskeleton in the epidermis and two to three outer cortex cell files. Our data show that the cytoskeleton in the cells of the DTZ is especially sensitive to Al, consistent with the recently proposed specific Al sensitivity of this unique, apical maize root zone. PMID:10069846

  6. Anti-inflammatory and anti-cancer activity of mulberry (Morus alba L.) root bark

    PubMed Central

    2014-01-01

    Background Root bark of mulberry (Morus alba L.) has been used in herbal medicine as anti-phlogistic, liver protective, kidney protective, hypotensive, diuretic, anti-cough and analgesic agent. However, the anti-cancer activity and the potential anti-cancer mechanisms of mulberry root bark have not been elucidated. We performed in vitro study to investigate whether mulberry root bark extract (MRBE) shows anti-inflammatory and anti-cancer activity. Methods In anti-inflammatory activity, NO was measured using the griess method. iNOS and proteins regulating NF-κB and ERK1/2 signaling were analyzed by Western blot. In anti-cancer activity, cell growth was measured by MTT assay. Cleaved PARP, ATF3 and cyclin D1 were analyzed by Western blot. Results In anti-inflammatory effect, MRBE blocked NO production via suppressing iNOS over-expression in LPS-stimulated RAW264.7 cells. In addition, MRBE inhibited NF-κB activation through p65 nuclear translocation via blocking IκB-α degradation and ERK1/2 activation via its hyper-phosphorylation. In anti-cancer activity, MRBE deos-dependently induced cell growth arrest and apoptosis in human colorectal cancer cells, SW480. MRBE treatment to SW480 cells activated ATF3 expression and down-regulated cyclin D1 level. We also observed that MRBE-induced ATF3 expression was dependent on ROS and GSK3β. Moreover, MRBE-induced cyclin D1 down-regulation was mediated from cyclin D1 proteasomal degradation, which was dependent on ROS. Conclusions These findings suggest that mulberry root bark exerts anti-inflammatory and anti-cancer activity. PMID:24962785

  7. The effects of dopamine on root growth and enzyme activity in soybean seedlings

    PubMed Central

    Guidotti, Bruno Boni; Gomes, Bruno Ribeiro; Siqueira-Soares, Rita de Cássia; Soares, Anderson Ricardo; Ferrarese-Filho, Osvaldo

    2013-01-01

    In the present study, we investigated the effects of dopamine, an allelochemical exuded from the velvetbean (Mucuna pruriens L DC. var utilis), on the growth and cell viability of soybean (Glycine max L. Merrill) roots. We analyzed the effects of dopamine on superoxide dismutase, phenylalanine ammonia-lyase and cell wall-bound peroxidase activities as well as its effects on lignin contents in the roots. Three-day-old seedlings were cultivated in half-strength Hoagland nutrient solution (pH 6.0), without or with 0.25 to 1.0 mM dopamine, in a growth chamber (25°C, 12L:12D photoperiod, irradiance of 280 μmol m−2 s−1) for 24 h. In general, the length, fresh weight and dry weight of roots, cell viability, PAL and POD activities decreased, while SOD activities increased after dopamine treatment. The content of lignin was not altered. The data demonstrate the susceptibility of soybean to dopamine and reinforce the role of this catecholamine as a strong allelochemical. The results also suggest that dopamine-induced inhibition in soybean roots is not related to the production of lignin, but may be related to damage caused by reactive oxygen species. PMID:23838960

  8. Analgesic and anti-inflammatory activity of root bark of Grewia asiatica Linn. in rodents

    PubMed Central

    Paviaya, Udaybhan Singh; Kumar, Parveen; Wanjari, Manish M.; Thenmozhi, S.; Balakrishnan, B. R.

    2013-01-01

    Background: Grewia asiatica Linn. (Family: Tiliaceae), called Phalsa in Hindi is an Indian medicinal plant used for a variety of therapeutic and nutritional uses. The root bark of the plant is traditionally used in rheumatism (painful chronic inflammatory condition). Aims: The present study demonstrates the analgesic and anti-inflammatory activity of root bark of G. asiatica in rodents. Settings and Design: The methanolic extract of Grewia asiatica (MEGA) and aqueous extract of Grewia asiatica (AEGA) of the bark were prepared and subjected to phytochemical tests and pharmacological screening for analgesic and anti-inflammatory effect in rodents. Materials and Methods: Analgesic effect was studied using acetic acid-induced writhing in mice and hot plate analgesia in rats while anti-inflammatory activity was investigated using carrageenan-induced paw oedema in rats. The MEGA or AEGA was administered orally in doses of 200 and 400 mg/kg/day of body weight. Statistical Analysis: Data were analysed by one-way analysis of variance followed by Dunnett's test. Results: The extracts showed a significant inhibition of writhing response and increase in hot plate reaction time and also caused a decrease in paw oedema. The effects were comparable with the standard drugs used. Conclusions: The present study indicates that root bark of G. asiatica exhibits peripheral and central analgesic effect and anti-inflammatory activity, which may be attributed to the various phytochemicals present in root bark of G. asiatica. PMID:24501443

  9. Fusion Competent Synaptic Vesicles Persist upon Active Zone Disruption and Loss of Vesicle Docking.

    PubMed

    Wang, Shan Shan H; Held, Richard G; Wong, Man Yan; Liu, Changliang; Karakhanyan, Aziz; Kaeser, Pascal S

    2016-08-17

    In a nerve terminal, synaptic vesicle docking and release are restricted to an active zone. The active zone is a protein scaffold that is attached to the presynaptic plasma membrane and opposed to postsynaptic receptors. Here, we generated conditional knockout mice removing the active zone proteins RIM and ELKS, which additionally led to loss of Munc13, Bassoon, Piccolo, and RIM-BP, indicating disassembly of the active zone. We observed a near-complete lack of synaptic vesicle docking and a strong reduction in vesicular release probability and the speed of exocytosis, but total vesicle numbers, SNARE protein levels, and postsynaptic densities remained unaffected. Despite loss of the priming proteins Munc13 and RIM and of docked vesicles, a pool of releasable vesicles remained. Thus, the active zone is necessary for synaptic vesicle docking and to enhance release probability, but releasable vesicles can be localized distant from the presynaptic plasma membrane. PMID:27537483

  10. Accumulation of phenanthrene by roots of intact wheat (Triticum acstivnm L.) seedlings: passive or active uptake?

    PubMed Central

    2010-01-01

    Background Polycyclic aromatic hydrocarbons (PAHs) are of particular concern due to their hydrophobic, recalcitrant, persistent, potentially carcinogenic, mutagenic and toxic properties, and their ubiquitous occurrence in the environment. Most of the PAHs in the environment are present in surface soil. Plants grown in PAH-contaminated soils or water can become contaminated with PAHs because of their uptake. Therefore, they may threaten human and animal health. However, the mechanism for PAHs uptake by crop roots is little understood. It is important to understand exactly how PAHs are transported into the plant root system and into the human food chain, since it is beneficial in governing crop contamination by PAHs, remedying soils or waters polluted by PAHs with plants, and modeling potential uptake for risk assessment. Results The possibility that plant roots may take up phenanthrene (PHE), a representative of PAHs, via active process was investigated using intact wheat (Triticum acstivnm L.) seedlings in a series of hydroponic experiments. The time course for PHE uptake into wheat roots grown in Hoagland solution containing 5.62 μM PHE for 36 h could be separated into two periods: a fast uptake process during the initial 2 h and a slow uptake component thereafter. Concentration-dependent PHE uptake was characterized by a smooth, saturable curve with an apparent Km of 23.7 μM and a Vmax of 208 nmol g-1 fresh weight h-1, suggesting a carrier-mediated uptake system. Competition between PHE and naphthalene for their uptake by the roots further supported the carrier-mediated uptake system. Low temperature and 2,4-dinitrophenol (DNP) could inhibit PHE uptake equally, indicating that metabolism plays a role in PHE uptake. The inhibitions by low temperature and DNP were strengthened with increasing concentration of PHE in external solution within PHE water solubility (7.3 μM). The contribution of active uptake to total absorption was almost 40% within PHE water

  11. Highly oxygenated triterpenoids from the roots of Schisandra chinensis and their anti-inflammatory activities.

    PubMed

    Song, Qiu-Yan; Gao, Kun; Nan, Zhi-Biao

    2016-01-01

    A new highly oxygenated triterpenoid, schinchinenlactone D (1), and three known compounds (2-4) were isolated from the roots of Schisandra chinensis. Their structures were determined by combining the spectroscopic analysis with the theoretical computations. The anti-inflammatory activities of compounds 1-4 were evaluated, and compound 3 exhibits the most significant activity in the inhibition of NO production with an IC50 value of 10.6 μM. PMID:26313467

  12. Genetic variability of oxalate oxidase activity and elongation in water-stressed primary roots of diverse maize and rice lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Previous work on maize primary roots under water stress showed that cell elongation is maintained in the apical region of the growth zone but progressively inhibited further from the apex. In association with these responses, several proteins related to reactive oxygen species (ROS) production, part...

  13. Antidiabetic activity of the chemical constituents of Combretum dolichopetalum root in mice

    PubMed Central

    Uzor, Philip F.; Osadebe, Patience O.

    2016-01-01

    The root of Combretum dolichopetalum (Combreatacea) is used in ethnomedicine for the management of diabetes mellitus. Though some compounds have been isolated from it, the antidiabetic principles have not been identified. The present study was designed to evaluate the chemical constituents from the root of C. dolichopetalum with a view to identifying the antidiabetic principles. The constituents include the alkaloids, echinulin (1) and arestrictin B (2), the terpenoids, arjunolic acid (3) and 4'-dihydrophaseic acid (4) as well as the phenolic acids, ellagic acid (5) and 3, 4, 3'-tri-O-methylellagic acid (6). Twenty eight mice (in seven groups, n = 4) were made diabetic using alloxan monohydrate (i.p., 120 mg/kg) and treated orally with either the vehicle (control group), any of the constituents or glibenclamide (standard drug). The fasting blood glucose of the diabetic animals was monitored for nine hours. Results showed that all the chemical constituents (1-6) exhibited significant (p < 0.05) antidiabetic activity comparable to glibenclamide. The alkaloids exhibited the most profound antidiabetic activity. The present study has thus identified the antidiabetic principles of C. dolichopetalum root as echinulin, arestrictin B, arjunolic acid, 4'-dihydrophaseic acid, ellagic acid and 3, 4, 3'-tri-O-methylellagic acid. The study has further validated the ethnomedicinal use of the root of C. dolichopetalum in diabetes. PMID:27298614

  14. Antidiabetic activity of the chemical constituents of Combretum dolichopetalum root in mice.

    PubMed

    Uzor, Philip F; Osadebe, Patience O

    2016-01-01

    The root of Combretum dolichopetalum (Combreatacea) is used in ethnomedicine for the management of diabetes mellitus. Though some compounds have been isolated from it, the antidiabetic principles have not been identified. The present study was designed to evaluate the chemical constituents from the root of C. dolichopetalum with a view to identifying the antidiabetic principles. The constituents include the alkaloids, echinulin (1) and arestrictin B (2), the terpenoids, arjunolic acid (3) and 4'-dihydrophaseic acid (4) as well as the phenolic acids, ellagic acid (5) and 3, 4, 3'-tri-O-methylellagic acid (6). Twenty eight mice (in seven groups, n = 4) were made diabetic using alloxan monohydrate (i.p., 120 mg/kg) and treated orally with either the vehicle (control group), any of the constituents or glibenclamide (standard drug). The fasting blood glucose of the diabetic animals was monitored for nine hours. Results showed that all the chemical constituents (1-6) exhibited significant (p < 0.05) antidiabetic activity comparable to glibenclamide. The alkaloids exhibited the most profound antidiabetic activity. The present study has thus identified the antidiabetic principles of C. dolichopetalum root as echinulin, arestrictin B, arjunolic acid, 4'-dihydrophaseic acid, ellagic acid and 3, 4, 3'-tri-O-methylellagic acid. The study has further validated the ethnomedicinal use of the root of C. dolichopetalum in diabetes. PMID:27298614

  15. Antioxidant and Antityrosinase Activity of Flemingia macrophylla and Glycine tomentella Roots.

    PubMed

    Wang, Bor-Sen; Juang, Lih-Jeng; Yang, Jeng-Jer; Chen, Li-Ying; Tai, Huo-Mu; Huang, Ming-Hsing

    2012-01-01

    The antioxidant and antityrosinase activities of the water extract of Flemingia macrophylla root (WEFM) were investigated. The results showed that WEFM exhibited radical scavenging and reducing activities, as well as ferrous ion chelating property. In addition, WEFM also protected phospholipids against oxidation, indicating that WEFM could protect biomolecules from oxidative damage. Meanwhile, in the range of 50-100 μg/mL, the tyrosinase inhibitory activity of WEFM increased with an increase in sample concentration and was superior to that of the water extract of Glycine tomentella root (WEGT). A high performance liquid chromatography analysis was used to determine the phenolic components, revealing that daidzin, daidzein, genistin, and genistein were present in WEFM and WEGT. Acting as an antioxidant and a tyrosinase inhibitor, these bioactive constituents could contribute to the protective effects of WEFM. Overall, the results showed that WEFM might serve as a natural antioxidant and tyrosinase inhibitor. PMID:22997529

  16. Antioxidant and Antityrosinase Activity of Flemingia macrophylla and Glycine tomentella Roots

    PubMed Central

    Wang, Bor-Sen; Juang, Lih-Jeng; Yang, Jeng-Jer; Chen, Li-Ying; Tai, Huo-Mu; Huang, Ming-Hsing

    2012-01-01

    The antioxidant and antityrosinase activities of the water extract of Flemingia macrophylla root (WEFM) were investigated. The results showed that WEFM exhibited radical scavenging and reducing activities, as well as ferrous ion chelating property. In addition, WEFM also protected phospholipids against oxidation, indicating that WEFM could protect biomolecules from oxidative damage. Meanwhile, in the range of 50–100 μg/mL, the tyrosinase inhibitory activity of WEFM increased with an increase in sample concentration and was superior to that of the water extract of Glycine tomentella root (WEGT). A high performance liquid chromatography analysis was used to determine the phenolic components, revealing that daidzin, daidzein, genistin, and genistein were present in WEFM and WEGT. Acting as an antioxidant and a tyrosinase inhibitor, these bioactive constituents could contribute to the protective effects of WEFM. Overall, the results showed that WEFM might serve as a natural antioxidant and tyrosinase inhibitor. PMID:22997529

  17. Choice of solvent in the extraction of Angelica archangelica roots with reference to calcium blocking activity.

    PubMed

    Härmälä, P; Vuorela, H; Törnquist, K; Hiltunen, R

    1992-04-01

    Twenty solvents were tested in the extraction of compounds from the roots of Angelica archangelica L. (Apiaceae), and the calcium-antagonistic activity of the extracts was investigated. Special attention was paid to the physical and chemical properties of the solvents and their extraction abilities. The calcium antagonistic effect of the extracts was investigated by measuring the inhibition of depolarization-induced Ca2+ uptake in rat pituitary GH4C1 cells. The criteria used in determining the best solvents for the extraction were the yield and the biological activity of the extract, as well as the amount of nonpolar compounds in the extract. The final criterion used in selecting the solvent was its usability with reference to boiling point, chemical interactions (e.g. methylation), etc. Chloroform was found to be the best solvent for the extraction of nonpolar, biologically active compounds from the roots of A. archangelica. PMID:1529031

  18. Maize Root Phytase (Purification, Characterization, and Localization of Enzyme Activity and Its Putative Substrate).

    PubMed Central

    Hubel, F.; Beck, E.

    1996-01-01

    Three phytase (EC 3.1.3.26) isoforms from the roots of 8-d-old maize (Zea mays L. var Consul) seedlings were separated from phosphatases and purified to near homogeneity. The molecular mass of the native protein was 71 kD, and the isoelectric points of the three isoforms were pH 5.0, 4.9, and 4.8. Each of the three isoforms consisted of two subunits with a molecular mass of 38 kD. The temperature and pH optima (40[deg]C, pH 5.0) of these three isoforms, as well as the apparent Michaelis constants for sodium inositol hexakisphosphate (phytate) (43, 25, and 24 [mu]M) as determined by the release of inorganic phosphate, were only slightly different. Phytate concentrations higher than 300 [mu]M were inhibitory to all three isoforms. In contrast, the dephosphorylation of 4-nitrophenyl phosphate was not inhibited by any substrate concentration, but the Michaelis constants for this substrate were considerably higher (137-157 [mu]M). Hydrolysis of phytate by the phytase isoforms is a nonrandom reaction. D/L-Inositol-1,2,3,4,5- pentakisphosphate was identified as the first and D/L-inositol-1,2,5,6-tetrakisphosphate as the second intermediate in phytate hydrolysis. Phytase activity was localized in root slices. Although phosphatase activity was present in the stele and the cortex of the primary root, phytase activity was confined to the endodermis. Phytate was identified as the putative native substrate in maize roots (45 [mu]g P g-1 dry matter). It was readily labeled upon supplying [32P]phosphate to the roots. PMID:12226456

  19. Variations in Soil Properties and Herbicide Sorption Coefficients with Depth in Relation to PRZM (Pesticide Root Zone Model) Calculations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    There are few experimental data available on how herbicide sorption coefficients change across small increments within soil profiles. Soil profiles were obtained from three landform elements (eroded upper slope, deposition zone, and eroded waterway) in a strongly eroded agricultural field and segmen...

  20. Evaluation of Diuretic Activity of Alcoholic Extract of Roots of Cissampelos Pareira in Albino Rats

    PubMed Central

    Khanwelkar, Chitra C.; Nimmagadda, Venkat Rao; Dasi, Jeevan Mani Babu; Chavan, Vasant R.; Kutani, Aruna; Kotagiri, Karthik

    2014-01-01

    Background: In congestive heart failure, nephritis, toxemia of pregnancy, premenstrual tension and hypertension associated with oedema diuretic compounds are much helpful to relieve these conditions. Aims: To study the diuretic activity of alcoholic extract of roots of Cissampelos pareira by Lipschitz method in albino rats. Methods and Material: Five groups of Albino rats were used to evaluate the diuretic activity of alcoholic extract of roots of Cissampelos pareira by using metabolic cages. The group I serves as normal control received vehicle (2% CMC in normal saline), group II with Furosemide (10 mg/Kg, p.o), Groups III, IV and V with low (100 mg/kg), medium (200 mg/kg), and high (400 mg/kg) doses of alcoholic extract of roots of Cissampelos pareira respectively. Immediately after the alcoholic extract of roots of Cissampelos pareira treatment all the rats were hydrated with saline (15 ml/kg, p.o) and 2 animals placed in each metabolic cage, kept at 21°C±0.5°C. No food and water was made available to animals for 5 hour. The total volume of urine collected with each metabolic cage was measured at the end of 5 hour. Various parameters like total urine volume and concentration of different ions i.e.; Sodium, Potassium , Chloride in the urine were measured. Results: In this model when compared to control group the alcoholic extract of roots of Cissampelos pareira treated groups at different dose levels (100,200 and 400 mg/kg) have noted with significant increase in the urine volume and also significantly enhanced the excretion of Sodium, Potassium and Chloride ions in urine. Conclusion: Results showed that single dose administration of standard Furosemide and alcoholic extract of roots of Cissampelos pareira significantly (p<0.05*, p<0.01**, p<0.001***) increased the urine output along with an increase in elimination of Sodium, Potassium, and Chloride ions. Alcoholic extract of roots of Cissampelos pareira 400 mg/Kg produced a comparable diuretic activity with

  1. Efficacy of laser-based irrigant activation methods in removing debris from simulated root canal irregularities.

    PubMed

    Deleu, Ellen; Meire, Maarten A; De Moor, Roeland J G

    2015-02-01

    In root canal therapy, irrigating solutions are essential to assist in debridement and disinfection, but their spread and action is often restricted by canal anatomy. Hence, activation of irrigants is suggested to improve their distribution in the canal system, increasing irrigation effectiveness. Activation can be done with lasers, termed laser-activated irrigation (LAI). The purpose of this in vitro study was to compare the efficacy of different irrigant activation methods in removing debris from simulated root canal irregularities. Twenty-five straight human canine roots were embedded in resin, split, and their canals prepared to a standardized shape. A groove was cut in the wall of each canal and filled with dentin debris. Canals were filled with sodium hypochlorite and six irrigant activation procedures were tested: conventional needle irrigation (CI), manual-dynamic irrigation with a tapered gutta percha cone (manual-dynamic irrigation (MDI)), passive ultrasonic irrigation, LAI with 2,940-nm erbium-doped yttrium aluminum garnet (Er:YAG) laser with a plain fiber tip inside the canal (Er-flat), LAI with Er:YAG laser with a conical tip held at the canal entrance (Er-PIPS), and LAI with a 980-nm diode laser moving the fiber inside the canal (diode). The amount of remaining debris in the groove was scored and compared among the groups using non-parametric tests. Conventional irrigation removed significantly less debris than all other groups. The Er:YAG with plain fiber tip was more efficient than MDI, CI, diode, and Er:YAG laser with PIPS tip in removing debris from simulated root canal irregularities. PMID:24091791

  2. Application of a soil moisture diagnostic equation for estimating root-zone soil moisture in arid and semi-arid regions

    NASA Astrophysics Data System (ADS)

    Pan, Feifei; Nieswiadomy, Michael; Qian, Shuan

    2015-05-01

    Knowledge of soil moisture in the root zone is critical for crop growth estimation and irrigation scheduling. In this study, a soil moisture diagnostic equation is applied to estimate soil moisture at depths of 0-100 cm (because the majority of crop roots are in the top 100 cm of soil) at four USDA Soil Climate Analysis Network (SCAN) sites in arid and semi-arid regions: TX2105 in northwest Texas, NM2015 and NM2108 in east New Mexico, and AZ2026 in southeast Arizona. At each site, a dataset of 5-6 years of records of daily soil moisture, daily mean air temperature, precipitation and downward solar radiation is compiled and processed. Both the sinusoidal wave function of day of year (DOY) and a linear function of the potential evapotranspiration (PET) are used to approximate the soil moisture loss coefficient. The first four years of data are used to derive the soil moisture loss function and the empirical parameters in the soil moisture diagnostic equation. The derived loss function and empirical parameters are then applied to estimate soil moisture in the last fifth or sixth year at each site. Root mean square errors (RMSEs) of the estimated volumetric soil moistures in five different soil columns (i.e., 5 cm, 10 cm, 20 or 30 cm, 50 cm, and 100 cm) are less than 3.2 (%V/V), and the accuracy of the estimated soil moistures using the sinusoidal soil moisture loss function is slightly better than the PET-based loss functions. In addition to the three advantages of this soil moisture diagnostic equation, i.e., (1) non-cumulative errors in the estimated soil moisture, (2) no regular recalibration is required to correct the cumulative errors, and (3) no numerical iteration and initial moisture inputs are needed since only precipitation data are required, this study also demonstrates that the soil moisture diagnostic equation not only can be used to estimate surface soil moisture, but also the entire root-zone soil moisture.

  3. A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding in Solanum dulcamara.

    PubMed

    Dawood, Thikra; Yang, Xinping; Visser, Eric J W; Te Beek, Tim A H; Kensche, Philip R; Cristescu, Simona M; Lee, Sangseok; Floková, Kristýna; Nguyen, Duy; Mariani, Celestina; Rieu, Ivo

    2016-04-01

    Soil flooding is a common stress factor affecting plants. To sustain root function in the hypoxic environment, flooding-tolerant plants may form new, aerenchymatous adventitious roots (ARs), originating from preformed, dormant primordia on the stem. We investigated the signaling pathway behind AR primordium reactivation in the dicot species Solanum dulcamara Transcriptome analysis indicated that flooding imposes a state of quiescence on the stem tissue, while increasing cellular activity in the AR primordia. Flooding led to ethylene accumulation in the lower stem region and subsequently to a drop in abscisic acid (ABA) level in both stem and AR primordia tissue. Whereas ABA treatment prevented activation of AR primordia by flooding, inhibition of ABA synthesis was sufficient to activate them in absence of flooding. Together, this reveals that there is a highly tissue-specific response to reduced ABA levels. The central role for ABA in the response differentiates the pathway identified here from the AR emergence pathway known from rice (Oryza sativa). Flooding and ethylene treatment also induced expression of the polar auxin transporter PIN2, and silencing of this gene or chemical inhibition of auxin transport inhibited primordium activation, even though ABA levels were reduced. Auxin treatment, however, was not sufficient for AR emergence, indicating that the auxin pathway acts in parallel with the requirement for ABA reduction. In conclusion, adaptation of S. dulcamara to wet habitats involved co-option of a hormonal signaling cascade well known to regulate shoot growth responses, to direct a root developmental program upon soil flooding. PMID:26850278

  4. Evaluation of total phenolic compounds and insecticidal and antioxidant activities of tomato hairy root extract.

    PubMed

    Singh, Harpal; Dixit, Sameer; Verma, Praveen Chandra; Singh, Pradhyumna Kumar

    2014-03-26

    Tomatoes are one of the most consumed crops in the whole world because of their versatile importance in dietary food as well as many industrial applications. They are also a rich source of secondary metabolites, such as phenolics and flavonoids. In the present study, we described a method to produce these compounds from hairy roots of tomato (THRs). Agrobacterium rhizogenes strain A4 was used to induce hairy roots in the tomato explants. The Ri T-DNA was confirmed by polymerase chain reaction amplification of the rolC gene. Biomass accumulation of hairy root lines was 1.7-3.7-fold higher compared to in vitro grown roots. Moreover, THRs efficiently produced several phenolic compounds, such as rutin, quercetin, kaempferol, gallic acid, protocatechuic acid, ferulic acid, colorogenic acid, and caffeic acid. Gallic acid [34.02 μg/g of dry weight (DW)] and rutin (20.26 μg/g of DW) were the major phenolic acid and flavonoid produced by THRs, respectively. The activities of reactive oxygen species enzymes (catalase, ascorbate peroxidase, and superoxide dismutase) were quantified. The activity of catalase in THRs was 0.97 ± 0.03 mM H2O2 min(-1) g(-1), which was 1.22-fold (0.79 ± 0.09 mM H2O2 min(-1) g(-1)) and 1.59-fold (0.61 ± 0.06 mM H2O2 min(-1) g(-1)) higher than field grown and in vitro grown roots, respectively. At 100 μL/g concentration, the phenolic compound extract caused 53.34 and 40.00% mortality against Helicoverpa armigera and Spodoptera litura, respectively, after 6 days. Surviving larvae of H. armigera and S. litura on the phenolic compound extract after 6 days showed 85.43 and 86.90% growth retardation, respectively. PMID:24635720

  5. Carbon Dioxide Effects on Ethanol Production, Pyruvate Decarboxylase, and Alcohol Dehydrogenase Activities in Anaerobic Sweet Potato Roots 1

    PubMed Central

    Chang, Ling A.; Hammett, Larry K.; Pharr, David M.

    1983-01-01

    The effect of varied anaerobic atmospheres on the metabolism of sweet potato (Ipomoea batatas [L.] Lam.) roots was studied. The internal gas atmospheres of storage roots changed rapidly when the roots were submerged under water. O2 and N2 gases disappeared quickly and were replaced by CO2. There were no appreciable differences in gas composition among the four cultivars that were studied. Under different anaerobic conditions, ethanol concentration in the roots was highest in a CO2 environment, followed by submergence and a N2 environment in all the cultivars except one. A positive relationship was found between ethanol production and pyruvate decarboxylase activity from both 100% CO2-treated and 100% N2-treated roots. CO2 atmospheres also resulted in higher pyruvate decarboxylase activity than did N2 atmospheres. Concentrations of CO2 were higher within anaerobic roots than those in the ambient anaerobic atmosphere. The level of pyruvate decarboxylase and ethanol in anaerobic roots was proportional to the ambient CO2 concentration. The measurable activity of pyruvate decarboxylase that was present in the roots was about 100 times less than that of alcohol dehydrogenase. Considering these observations, it is suggested that the rate-limiting enzyme for ethanol biosynthesis in sweet potato storage roots under anoxia is likely to be pyruvate decarboxylase rather than alcohol dehydrogenase. PMID:16662798

  6. Different peroxidase activities and expression of abiotic stress-related peroxidases in apical root segments of wheat genotypes with different drought stress tolerance under osmotic stress.

    PubMed

    Csiszár, Jolán; Gallé, Agnes; Horváth, Edit; Dancsó, Piroska; Gombos, Magdolna; Váry, Zsolt; Erdei, László; Györgyey, János; Tari, Irma

    2012-03-01

    One-week-old seedlings of Triticum aestivum L. cv. Plainsman V, a drought tolerant; and Cappelle Desprez, a drought sensitive wheat cultivar were subjected gradually to osmotic stress using polyethylene glycol (PEG 6000) reaching 400 mOsm on the 11th day. Compared to controls cv. Plainsman V maintained the root growth and relative water content of root tissues, while these parameters were decreased in the drought sensitive cv. Cappelle Desprez under PEG-mediated osmotic stress. Simultaneously, H(2)O(2) content in 1-cm-long apical segment of roots comprising the proliferation and elongation zone, showed a transient increase in cv. Plainsman V and a permanent raise in cv. Cappelle Desprez. Measurements of the transcript levels of selected class III peroxidase (TaPrx) coding sequences revealed significant differences between the two cultivars on the 9th day, two days after applying 100 mOsm PEG. The abundance of TaPrx04 transcript was enhanced transitionally in the root apex of cv. Plainsman V but decreased in cv. Cappelle Desprez under osmotic stress while the expression of TaPrx01, TaPrx03, TaPrx19, TaPrx68, TaPrx107 and TaPrx109-C decreased to different extents in both cultivars. After a transient decrease, activities of soluble peroxidase fractions of crude protein extracts rose in both cultivars on day 11, but the activities of cell wall-bound fractions increased only in cv. Cappelle Desprez under osmotic stress. Parallel with high H(2)O(2) content of the tissues, certain isoenzymes of covalently bound fraction in cv. Cappelle Desprez showed increased activity suggesting that they may limit the extension of root cell walls in this cultivar. PMID:22305075

  7. Microbial weathering of apatite and wollastonite in a forest soil: Evidence from minerals buried in a root-free zone

    NASA Astrophysics Data System (ADS)

    Nezat, C. A.

    2011-12-01

    Mineral weathering is an important process in biogeochemical cycling because it releases nutrients from less labile pools (e.g., rocks) to the food chain. A field experiment was undertaken to determine the degree to which microbes - both fungi and bacteria - are responsible for weathering of Ca-bearing minerals. The experiment was performed at the Hubbard Brook Experimental Forest (HBEF) in the northeastern USA, where acid deposition has leached plant-available calcium from soils for decades. Trees obtain soil nutrients through root uptake as well as through mycorrhizal fungi with which they are symbiotically associated. These fungi extend their hyphae from the tree roots into the soil and exude organic acids that may enhance mineral dissolution. The two most common types of symbiotic fungal-tree associations are ectomycorrhizae, which are associated with spruce (Picea), fir (Abies), and beech (Fagus); and arbuscular mycorrhizae which are commonly associated with angiosperms, such as maples (Acer). To examine the role of fungi and bacteria in weathering of Ca- and/or P-bearing minerals, mesh bags containing sand-sized grains of quartz (as a control), quartz plus 1% wollastonite (CaSiO3), or quartz plus 1% apatite (Ca5(PO4)3F) were buried ~15 cm deep in mineral soil beneath American beech, sugar maple, and mixed spruce and balsam fir stands at the HBEF. Half of the bags were constructed of 50-μm mesh to exclude roots but allow fungal hyphae and bacteria to enter the bags; the remaining bags had 1-μm mesh to exclude fungi and roots but allow bacteria to enter. The bags were retrieved ~ 1, 2 or 4 years after burial. Microbial community composition and biomass in the mesh bags and surrounding soil were characterized and quantified using phospholipid fatty acid (PLFA) analysis. Fungal biomass in the soil and control bags did not differ significantly among stand types. In contrast, the degree of fungal colonization in apatite- and wollastonite-amended bags varied

  8. Development and Validation of a Model to Predict Aerosol Breathing Zone Concentrations During Common Outdoor Activities

    EPA Science Inventory

    Research has been conducted on aerosol emission rates during various activities as well as aerosol transport into the breathing zone under idealized conditions. However, there has been little effort to link the two into a model for predicting a person’s breathing zone concentrat...

  9. 78 FR 68026 - Foreign-Trade Zone (FTZ) 99-Wilmington, Delaware, Notification of Proposed Production Activity...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone (FTZ) 99--Wilmington, Delaware, Notification of Proposed Production Activity, Noramco, Inc., (Pharmaceutical Intermediate), Wilmington, Delaware The Delaware Economic Development Office, grantee of FTZ...

  10. 77 FR 36997 - Foreign-Trade Zone 7-Mayaguez, PR; Notification of Proposed Production Activity; Baxter...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 7--Mayaguez, PR; Notification of Proposed Production Activity; Baxter Healthcare of Puerto Rico; (Pharmaceutical and Nutritional Intravenous Bags and Administration Sets); Aibonito and Jayuya, PR The...

  11. 77 FR 61381 - Foreign-Trade Zone 7-Mayaguez, Puerto Rico, Authorization of Production Activity, Baxter...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-09

    ... Foreign-Trade Zones Board Foreign-Trade Zone 7--Mayaguez, Puerto Rico, Authorization of Production Activity, Baxter Healthcare of Puerto Rico, (Pharmaceutical and Nutritional Intravenous Bags and Administration Sets); Aibonito and Jayuya, Puerto Rico The Puerto Rico Industrial Development Company, grantee...

  12. 77 FR 48127 - Foreign-Trade Zone 20-Suffolk, VA; Notification of Proposed Production Activity, Usui...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 20--Suffolk, VA; Notification of Proposed Production Activity, Usui International Corporation, (Diesel Engine Fuel Lines), Chesapeake, VA The Virginia Port Authority, grantee of FTZ 20, submitted a...

  13. 15 CFR 400.49 - Monitoring and reviews of zone operations and activity.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 15 Commerce and Foreign Trade 2 2014-01-01 2014-01-01 false Monitoring and reviews of zone operations and activity. 400.49 Section 400.49 Commerce and Foreign Trade Regulations Relating to Commerce and Foreign Trade (Continued) FOREIGN-TRADE ZONES BOARD, DEPARTMENT OF COMMERCE REGULATIONS OF...

  14. 15 CFR 400.49 - Monitoring and reviews of zone operations and activity.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 15 Commerce and Foreign Trade 2 2013-01-01 2013-01-01 false Monitoring and reviews of zone operations and activity. 400.49 Section 400.49 Commerce and Foreign Trade Regulations Relating to Commerce and Foreign Trade (Continued) FOREIGN-TRADE ZONES BOARD, DEPARTMENT OF COMMERCE REGULATIONS OF...

  15. 77 FR 74170 - Foreign-Trade Zone 84-Houston, TX; Notification of Proposed Production Activity; Mitsubishi...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-13

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 84--Houston, TX; Notification of Proposed Production Activity; Mitsubishi Caterpillar Forklift America Inc.; (Forklift Trucks); Houston, TX The Port of Houston Authority, grantee of FTZ 84, submitted...

  16. 77 FR 58354 - Foreign-Trade Zone 265-Conroe, TX; Notification of Proposed Production Activity, Bauer...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-20

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 265--Conroe, TX; Notification of Proposed Production Activity, Bauer Manufacturing Inc. (Pile Drivers and Boring Machinery); Conroe, TX The City of Conroe, Texas, grantee of FTZ 265, submitted a notification...

  17. 77 FR 55182 - Foreign-Trade Zone 45-Portland, OR, Authorization of Production Activity, Shimadzu USA...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-07

    ...-52-2012, 77 FR 48127, 8/13/2012). The notification was processed in accordance with the regulations... (77 FR 28353, 5/14/2012). The FTZ Board has determined that no further review of the activity is... Foreign-Trade Zones Board Foreign-Trade Zone 45--Portland, OR, Authorization of Production...

  18. 77 FR 71167 - Foreign-Trade Zone 59-Lincoln, Nebraska, Authorization of Production Activity, Novartis Consumer...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... inviting public comment (77 FR 50462, August 21, 2012). The FTZ Board has determined that no further review... Foreign-Trade Zones Board Foreign-Trade Zone 59--Lincoln, Nebraska, Authorization of Production Activity, Novartis Consumer Health, Inc. (Pharmaceutical and Related Preparations Production), Lincoln,...

  19. 78 FR 66330 - Foreign-Trade Zone 196-Fort Worth, Texas, Authorization of Production Activity, Flextronics...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-05

    ... From the Federal Register Online via the Government Publishing Office ] DEPARTMENT OF COMMERCE Foreign-Trade Zones Board Foreign-Trade Zone 196--Fort Worth, Texas, Authorization of Production Activity, Flextronics International USA, Inc. (Mobile Phone Assembly and Kitting), Fort Worth, Texas On June 14, 2013, Flextronics International USA,...

  20. Chemical composition and antimicrobial activity of solidago canadensis linn. Root essential oil.

    PubMed

    Mishra, Devendra; Joshi, Shivani; Bisht, Ganga; Pilkhwal, Sangeeta

    2010-06-01

    The essential oil from the roots of Solidago canadensis Linn. (fam. Asteraceae) was analyzed by GC, GC/MS and NMR spectroscopy. Thirty nine constituents comprising 75.4% of the total oil were identified from the oil. Thymol constituted 20.25% of the oil followed by α-copaene (6.26%) and carvacrol (5.51%). The antimicrobial activity of the oil was evaluated using disc diffusion method. Results showed that the oil exhibited significant antibacterial activity against S. feacalis and E. coli whereas it showed moderate antifungal activity against C. albicans. PMID:24825986

  1. Antimicrobial and antioxidant activities of Cichorium intybus root extract using orthogonal matrix design.

    PubMed

    Liu, Haitao; Wang, Quanzhen; Liu, Yuyan; Chen, Guo; Cui, Jian

    2013-02-01

    Solvent, impregnation time, sonication repetitions, and ultrasonic power were important factors in the process of ultrasound-assisted extraction from chicory (Cichorium intybus) root, while there were no studies about optimizing these 4 factors for extract yield, total phenolic content (TPC), antioxidant, antibacterial, and antifungal activity of the extracts using orthogonal matrix design. The present research demonstrated that the solvent composition played a significant role in the improving extract yield, TPC, antioxidant, and antibacterial activities. The other 3 factors had inequable effect on different purposes, ultrasonic power could improve TPC and antioxidant activity, but long time of extraction lowered antioxidant activity. The TPC increased from 22.34 to 27.87 mg GAE (gallic acid equivalents)/100 g (dry extracts) with increasing solvent polarity. The half inhibition concentration (IC(50,) μg/mL) of the radical scavenging activity of the chicory extracts ranged from 281.00 to 983.33 μg/mL. The content of caffeoylquinic acids of root extract, which was extracted by the optimal combination was 0.104%. Several extracts displayed antibacterial activities against Escherichia coli, Staphylococcus aureus, Bacillus thuringiensis, Bacillus subtilis, and Salmonella typhi, while Penicillium sp. and Aspergillus sp. resisted against all the extracts. Combination of 70% ethanol v/v, 24-h impregnation time, 3 sonication rounds, and 300-W ultrasonic input power was found to be the optimal combination for the chicory extract yield, TPC, antioxidant activity, and antibacterial activity. PMID:23387896

  2. Earthquake mechanisms and active tectonics of the Hellenic subduction zone

    NASA Astrophysics Data System (ADS)

    Shaw, Beth; Jackson, James

    2010-05-01

    We use improved focal mechanisms and centroid depth estimates of earthquakes, combined with GPS velocities, to examine the tectonics of the Hellenic subduction zone, and in particular the processes occurring at both ends of the Hellenic Arc. Nubia-Aegean convergence is accommodated by shallowly dipping thrust-faulting along the subduction-zone interface, as well as by steeper splay faults in the overriding material. From a comparison of observed and expected seismic moment release over the last 100 yr, combined with existing knowledge of the longer-term documented historical record, we confirm earlier suggestions that most (80 per cent) of this convergence is accommodated aseismically, that is, that the subduction zone is uncoupled. This conclusion is robust, even allowing for rare very large earthquakes on splay faults, such as that of AD 365, and also allowing for the contribution of small earthquakes. The downgoing Nubian plate deforms by arc-parallel contraction at all depths, from 200 km seaward of Crete to at least 100 km within the subducting slab. Extensional (T) axes of earthquakes are aligned downdip within the descending slab suggesting that, even if the aseismic prolongation of the slab has reached the 670 km mantle discontinuity, it does not transmit stresses to shallower depths. Shallow thrust-faulting earthquakes on the subduction interface show a divergence of slip vectors round the arc, and GPS measurements show that this is accommodated mainly by E-W extension on normal faults in the overriding Aegean material. The eastern end of the subduction zone, south of Rhodes, displays distributed deformation in the overriding material, including a mixture of strike-slip and splay-thrust faulting, and probably involves rotations about a vertical axes. Here slip on the interface itself is by thrust faulting with slip vectors oblique to the arc but parallel to the overall Nubia-Aegean convergence: there is no evidence for slip-partitioning in the traditional

  3. Phytochemistry and hepatoprotective activity of aqueous extract of Amaranthus tricolor Linn. roots

    PubMed Central

    Aneja, Simran; Vats, Manisha; Aggarwal, Sushma; Sardana, Satish

    2013-01-01

    Background: The genus Amaranthus has potential activity as a hepatoprotective agent. Objective: The present pharmacological investigation focuses on evaluation of the efficacy of aqueous extract of roots of Amaranthus tricolor Linn. for their protection against paracetamol (PCM) overdose induced hepatotoxicity. Materials and Methods: The aqueous extract of roots of A. tricolor Linn. was prepared and phytochemical screening was done. The biochemical investigation viz. serum glutamic oxaloacetate transaminase (SGOT), serum glutamic pyruvate transaminase (SGPT), alkaline phosphatase (ALP) and total Bilirubin (TB) was done against PCM-induced hepatotoxicity in wistar albino rats. The histopathological studies of liver were also done. Results: The phytochemical screening of the aqueous extract showed the presence of alkaloids, carbohydrates, flavanoids, amino acids, proteins, fixed oil, saponins and tannins, and phenolic compounds. Pretreatment with the aqueous extract of root significantly prevented the physical, biochemical, histological, and functional changes induced by paracetamol in the liver. The extract showed significant hepatoprotective effects as evidenced by decreased serum enzyme activities like SGPT, SGOT, ALP, and TB, which was supported by histopathological studies of liver. The aqueous extract showed significant hepatoprotective activity comparable with standard drug silymarin as well as hepatotoxin drug PCM. Conclusion: From these results, it is concluded that the A. tricolor has potential effectiveness in treating liver damage in a dose dependent manner. PMID:24459387

  4. The Rhizosphere Zone: A Hot Spot of Microbial Activity and Methylmercury Production in Saltmarsh Sediments of San Francisco Bay, California

    NASA Astrophysics Data System (ADS)

    Windham-Myers, L.; Marvin-Dipasquale, M.; Voytek, M.; Kirshtein, J.; Krabbenhoft, D. P.; Agee, J. L.; Cox, M.; Kakouros, E.; Collins, J. N.; Yee, D.

    2008-12-01

    Tidal marshes of varying hydrology and salinity have been shown to have high rates of microbial methylmercury (MeHg) production, especially the periodically flooded, higher elevations which are densely vegetated with shallowly rooted plants. The specific influence of emergent wetland plants and their active rhizosphere (root zone) on mercury (Hg) biogeochemistry, however, is poorly understood. Seasonal and spatial patterns of Hg biogeochemistry were examined in 2005 and 2006 at three marshes along a salinity gradient of the Petaluma River, in Northern San Francisco Bay, California. In addition, to directly examine the influence of rhizosphere activity on MeHg production, a suite of devegetation experiments was conducted in 2006 within each marsh using paired vegetated and devegetated plots in two marsh subhabitats: poorly- drained interior sites and well-drained "edge" sites near slough channels. Surface sediment (0-2cm) was sampled in both April and August from these plots, as well as from 1st and 3rd order slough channels that were naturally free of vegetation. Vegetated marsh sites produced 3- to19-fold more MeHg than did slough sites, and MeHg production rates were greater in marsh interior sites compared to more oxic marsh "edge" sites. Microbial biomass (ng DNA gdrysed) was greater in vegetated marsh settings, compared to slough channels, and increased significantly between April and August at all marsh sites. Despite this seasonal increase in microbial biomass, MeHg concentrations and production rates decreased from April to August in vegetated surface sediments. Microbial indicators of methylation also decreased from April to August, including rates of microbial sulfate reduction and the abundance of iron- and sulfate- reducing bacterial DNA. Results from the devegetated plots suggest that root exudation of fermentative labile carbon to surface soils is responsible for the higher microbial biomass, and the higher relative abundance of iron- and sulfate

  5. [Differences of activations in visual and associative zones during figurative and verbal activity].

    PubMed

    Nagornova, Zh V; Shemiakina, N V

    2014-04-01

    The study considers correlates of figurative and verbal tasks performance during attention paid to visual stimuli. There are 34 subjects (20 female, mean age 21, 2.5 [SD]) took parts in the study. During subjects performance of the task, there was carried out EEG registration from 19 sites according to 10-20%. Performance of the figurative creative task in comparison with control non-creative task of the same modality was accompanied by activation of occipital and parietal zones of the cerebral cortex (decrease of EEG spectral power in alpha 1 (7.5-9.5 Hz) and alpha2 (10-12.5 Hz) frequency bands was observed) whereas performance of a verbal creative task in the similar test-control comparison was accompanied by decrease of activation in occipital zones (revealed through increase of EEG spectral in alphal and alpha2 frequency bands). As visual stimuli were shown during the whole time of the creative and control tasks fulfilment was made an assumption observed distinction can be connected with redistribution of attention focus at various types of creative activity (figurative or verbal). PMID:25272453

  6. Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots.

    PubMed

    Courty, P E; Labbé, J; Kohler, A; Marçais, B; Bastien, C; Churin, J L; Garbaye, J; Le Tacon, F

    2011-01-01

    The impact of ectomycorrhiza formation on the secretion of exoenzymes by the host plant and the symbiont is unknown. Thirty-eight F(1) individuals from an interspecific Populus deltoides (Bartr.)×Populus trichocarpa (Torr. & A. Gray) controlled cross were inoculated with the ectomycorrhizal fungus Laccaria bicolor. The colonization of poplar roots by L. bicolor dramatically modified their ability to secrete enzymes involved in organic matter breakdown or organic phosphorus mobilization, such as N-acetylglucosaminidase, β-glucuronidase, cellobiohydrolase, β-glucosidase, β-xylosidase, laccase, and acid phosphatase. The expression of genes coding for laccase, N-acetylglucosaminidase, and acid phosphatase was studied in mycorrhizal and non-mycorrhizal root tips. Depending on the genes, their expression was regulated upon symbiosis development. Moreover, it appears that poplar laccases or phosphatases contribute poorly to ectomycorrhiza metabolic activity. Enzymes secreted by poplar roots were added to or substituted by enzymes secreted by L. bicolor. The enzymatic activities expressed in mycorrhizal roots differed significantly between the two parents, while it did not differ in non-mycorrhizal roots. Significant differences were found between poplar genotypes for all enzymatic activities measured on ectomycorrhizas except for laccases activity. In contrast, no significant differences were found between poplar genotypes for enzymatic activities of non-mycorrhizal root tips except for acid phosphatase activity. The level of enzymes secreted by the ectomycorrhizal root tips is under the genetic control of the host. Moreover, poplar heterosis was expressed through the enzymatic activities of the fungal partner. PMID:20881013

  7. Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots

    PubMed Central

    Courty, P. E.; Labbé, J.; Kohler, A.; Marçais, B.; Bastien, C.; Churin, J. L.; Garbaye, J.; Le Tacon, F.

    2011-01-01

    The impact of ectomycorrhiza formation on the secretion of exoenzymes by the host plant and the symbiont is unknown. Thirty-eight F1 individuals from an interspecific Populus deltoides (Bartr.)×Populus trichocarpa (Torr. & A. Gray) controlled cross were inoculated with the ectomycorrhizal fungus Laccaria bicolor. The colonization of poplar roots by L. bicolor dramatically modified their ability to secrete enzymes involved in organic matter breakdown or organic phosphorus mobilization, such as N-acetylglucosaminidase, β-glucuronidase, cellobiohydrolase, β-glucosidase, β-xylosidase, laccase, and acid phosphatase. The expression of genes coding for laccase, N-acetylglucosaminidase, and acid phosphatase was studied in mycorrhizal and non-mycorrhizal root tips. Depending on the genes, their expression was regulated upon symbiosis development. Moreover, it appears that poplar laccases or phosphatases contribute poorly to ectomycorrhiza metabolic activity. Enzymes secreted by poplar roots were added to or substituted by enzymes secreted by L. bicolor. The enzymatic activities expressed in mycorrhizal roots differed significantly between the two parents, while it did not differ in non-mycorrhizal roots. Significant differences were found between poplar genotypes for all enzymatic activities measured on ectomycorrhizas except for laccases activity. In contrast, no significant differences were found between poplar genotypes for enzymatic activities of non-mycorrhizal root tips except for acid phosphatase activity. The level of enzymes secreted by the ectomycorrhizal root tips is under the genetic control of the host. Moreover, poplar heterosis was expressed through the enzymatic activities of the fungal partner. PMID:20881013

  8. The effects of dopamine on antioxidant enzymes activities and reactive oxygen species levels in soybean roots

    PubMed Central

    Gomes, Bruno Ribeiro; Siqueira-Soares, Rita de Cássia; dos Santos, Wanderley Dantas; Marchiosi, Rogério; Soares, Anderson Ricardo; Ferrarese-Filho, Osvaldo

    2014-01-01

    In the current work, we investigated the effects of dopamine, an neurotransmitter found in several plant species on antioxidant enzyme activities and ROS in soybean (Glycine max L. Merrill) roots. The effects of dopamine on SOD, CAT and POD activities, as well as H2O2, O2•−, melanin contents and lipid peroxidation were evaluated. Three-day-old seedlings were cultivated in half-strength Hoagland nutrient solution (pH 6.0), without or with 0.1 to 1.0 mM dopamine, in a growth chamber (25°C, 12 h photoperiod, irradiance of 280 μmol m−2 s−1) for 24 h. Significant increases in melanin content were observed. The levels of ROS and lipid peroxidation decreased at all concentrations of dopamine tested. The SOD activity increased significantly under the action of dopamine, while CT activity was inhibited and POD activity was unaffected. The results suggest a close relationship between a possible antioxidant activity of dopamine and melanin and activation of SOD, reducing the levels of ROS and damage on membranes of soybean roots. PMID:25482756

  9. Comparative effect of partial root-zone drying and deficit irrigation on incidence of blossom-end rot in tomato under varied calcium rates

    PubMed Central

    Sun, Yanqi; Feng, Hao; Liu, Fulai

    2013-01-01

    This study investigated the comparative effects of reduced irrigation regimes—partial root-zone drying (PRD) and conventional deficit irrigation (DI)—on the incidence of blossom-end rot (BER) in tomato (Solanum lycopersicum L.) under three Ca-fertilization rates: 0, 100, and 200mg Ca kg–1 soil (denoted Ca0, Ca1, and Ca2, respectively). The plants were grown in split-root pots in a climate-controlled glasshouse and treated with PRD and DI during early flowering to the fruit maturity stage. The results showed that, in comparison with DI treatment, PRD significantly reduced BER incidence. A greater xylem sap abscisic acid concentration, lower stomatal conductance, and higher plant water status in the PRD in relation to the DI plants might have contributed to the increased fruit Ca uptake, and could have reduced BER development in tomato fruits. Therefore, under conditions with limited freshwater resources, application of PRD irrigation could be a promising approach for saving water and for preventing BER development in tomatoes. PMID:23530128

  10. Effect of simultaneous state-parameter estimation and forcing uncertainties on root-zone soil moisture for dynamic vegetation using EnKF

    NASA Astrophysics Data System (ADS)

    Monsivais-Huertero, Alejandro; Graham, Wendy D.; Judge, Jasmeet; Agrawal, Divya

    2010-04-01

    In this study, an EnKF-based assimilation algorithm was implemented to estimate root-zone soil moisture (RZSM) using the coupled LSP-DSSAT model during a growing season of corn. Experiments using both synthetic and field observations were conducted to understand effects of simultaneous state-parameter estimation, spatial and temporal update frequency, and forcing uncertainties on RZSM estimates. Estimating the state-parameters simultaneously with every 3-day assimilation of volumetric soil moisture (VSM) observations at 5 depths lowered the average standard deviation (ASD) and the root mean square error (RMSE) for RZSM by approximately 1.77% VSM (78%) and 2.18% VSM (93%), respectively, compared to the open-loop ASD where as estimating only states lowered the ASD by approximately 1.26% VSM (56%) and the RMSE by 1.66% VSM (71%). The synthetic case obtained RZSM estimates closer to the observations than the MicroWEX-2 case, particularly after precipitation/irrigation events. The differences in EnKF performance between MicroWEX-2 and synthetic observations may indicate other sources of errors in addition to those in parameters and forcings, such as errors in model biophysics.

  11. Comparative effect of partial root-zone drying and deficit irrigation on incidence of blossom-end rot in tomato under varied calcium rates.

    PubMed

    Sun, Yanqi; Feng, Hao; Liu, Fulai

    2013-04-01

    This study investigated the comparative effects of reduced irrigation regimes--partial root-zone drying (PRD) and conventional deficit irrigation (DI)--on the incidence of blossom-end rot (BER) in tomato (Solanum lycopersicum L.) under three Ca-fertilization rates: 0, 100, and 200mg Ca kg(-1) soil (denoted Ca0, Ca1, and Ca2, respectively). The plants were grown in split-root pots in a climate-controlled glasshouse and treated with PRD and DI during early flowering to the fruit maturity stage. The results showed that, in comparison with DI treatment, PRD significantly reduced BER incidence. A greater xylem sap abscisic acid concentration, lower stomatal conductance, and higher plant water status in the PRD in relation to the DI plants might have contributed to the increased fruit Ca uptake, and could have reduced BER development in tomato fruits. Therefore, under conditions with limited freshwater resources, application of PRD irrigation could be a promising approach for saving water and for preventing BER development in tomatoes. PMID:23530128

  12. Root-Zone Warming Differently Benefits Mature and Newly Unfolded Leaves of Cucumis sativus L. Seedlings under Sub-Optimal Temperature Stress

    PubMed Central

    Miao, Yanxiu; Gao, Lihong

    2016-01-01

    Sub-optimal temperature extensively suppresses crop growth during cool-season greenhouse production. Root-zone (RZ) warming is considered an economical option to alleviate crop growth reduction. In this study we cultivated cucumber seedlings in nutrient solution under different air-RZ temperature treatments to investigate the effects of RZ warming on seedling growth- and photosynthesis-related parameters in leaves. The air-RZ temperature treatments included sub-optimal RZ temperature 13°C and sub-optimal air temperature 20/12°C (day/night) (S13), RZ warming at 19°C and sub-optimal air temperature (S19), and RZ warming at 19°C and optimal air temperature 26/18°C (day/night) (O19). In addition, for each air-RZ temperature treatment, half of the seedlings were also treated with 2% (m/m) polyethylene glycol (PEG) dissolved in nutrient solution to distinguish the effect of root-sourced water supply from RZ temperature. At the whole-plant level, S19 significantly increased the relative growth rate (RGR) by approximately 18% compared with S13, although the increase was less than in O19 (50%) due to delayed leaf emergence. S19 alleviated both diffusive and metabolic limitation of photosynthesis in mature leaves compared with S13, resulting in a photosynthetic rate similar to that in O19 leaves. In newly unfolded leaves, S19 significantly promoted leaf area expansion and alleviated stomatal limitation of photosynthesis compared with S13. PEG addition had a limited influence on RGR and leaf photosynthesis, but significantly suppressed new leaf expansion. Thus, our results indicate that under sub-optimal temperature conditions, RZ warming promotes cucumber seedling growth by differently benefiting mature and newly unfolded leaves. In addition, RZ warming enhanced root-sourced water supply, mainly promoting new leaf expansion, rather than photosynthesis. PMID:27152599

  13. Root-Zone Warming Differently Benefits Mature and Newly Unfolded Leaves of Cucumis sativus L. Seedlings under Sub-Optimal Temperature Stress.

    PubMed

    Wang, Xiaozhuo; Zhang, Weihua; Miao, Yanxiu; Gao, Lihong

    2016-01-01

    Sub-optimal temperature extensively suppresses crop growth during cool-season greenhouse production. Root-zone (RZ) warming is considered an economical option to alleviate crop growth reduction. In this study we cultivated cucumber seedlings in nutrient solution under different air-RZ temperature treatments to investigate the effects of RZ warming on seedling growth- and photosynthesis-related parameters in leaves. The air-RZ temperature treatments included sub-optimal RZ temperature 13°C and sub-optimal air temperature 20/12°C (day/night) (S13), RZ warming at 19°C and sub-optimal air temperature (S19), and RZ warming at 19°C and optimal air temperature 26/18°C (day/night) (O19). In addition, for each air-RZ temperature treatment, half of the seedlings were also treated with 2% (m/m) polyethylene glycol (PEG) dissolved in nutrient solution to distinguish the effect of root-sourced water supply from RZ temperature. At the whole-plant level, S19 significantly increased the relative growth rate (RGR) by approximately 18% compared with S13, although the increase was less than in O19 (50%) due to delayed leaf emergence. S19 alleviated both diffusive and metabolic limitation of photosynthesis in mature leaves compared with S13, resulting in a photosynthetic rate similar to that in O19 leaves. In newly unfolded leaves, S19 significantly promoted leaf area expansion and alleviated stomatal limitation of photosynthesis compared with S13. PEG addition had a limited influence on RGR and leaf photosynthesis, but significantly suppressed new leaf expansion. Thus, our results indicate that under sub-optimal temperature conditions, RZ warming promotes cucumber seedling growth by differently benefiting mature and newly unfolded leaves. In addition, RZ warming enhanced root-sourced water supply, mainly promoting new leaf expansion, rather than photosynthesis. PMID:27152599

  14. FINAL REPORT. CONTROL OF BIOLOGICALLY ACTIVE DEGRADATION ZONES BY VERTICAL HETEROGENEITY: APPLICATIONS IN FRACTURED MEDIA

    EPA Science Inventory

    The key objective of this research was to determine the distribution of biologically active contaminant degradation zones in a fractured, subsurface medium with respect to vertical heterogeneities. Our expectation was that
    hydrogeological properties would determine the size, d...

  15. Presynaptic spinophilin tunes neurexin signalling to control active zone architecture and function

    PubMed Central

    Muhammad, Karzan; Reddy-Alla, Suneel; Driller, Jan H; Schreiner, Dietmar; Rey, Ulises; Böhme, Mathias A.; Hollmann, Christina; Ramesh, Niraja; Depner, Harald; Lützkendorf, Janine; Matkovic, Tanja; Götz, Torsten; Bergeron, Dominique D.; Schmoranzer, Jan; Goettfert, Fabian; Holt, Mathew; Wahl, Markus C.; Hell, Stefan W.; Scheiffele, Peter; Walter, Alexander M.; Loll, Bernhard; Sigrist, Stephan J.

    2015-01-01

    Assembly and maturation of synapses at the Drosophila neuromuscular junction (NMJ) depend on trans-synaptic neurexin/neuroligin signalling, which is promoted by the scaffolding protein Syd-1 binding to neurexin. Here we report that the scaffold protein spinophilin binds to the C-terminal portion of neurexin and is needed to limit neurexin/neuroligin signalling by acting antagonistic to Syd-1. Loss of presynaptic spinophilin results in the formation of excess, but atypically small active zones. Neuroligin-1/neurexin-1/Syd-1 levels are increased at spinophilin mutant NMJs, and removal of single copies of the neurexin-1, Syd-1 or neuroligin-1 genes suppresses the spinophilin-active zone phenotype. Evoked transmission is strongly reduced at spinophilin terminals, owing to a severely reduced release probability at individual active zones. We conclude that presynaptic spinophilin fine-tunes neurexin/neuroligin signalling to control active zone number and functionality, thereby optimizing them for action potential-induced exocytosis. PMID:26471740

  16. Presynaptic spinophilin tunes neurexin signalling to control active zone architecture and function.

    PubMed

    Muhammad, Karzan; Reddy-Alla, Suneel; Driller, Jan H; Schreiner, Dietmar; Rey, Ulises; Böhme, Mathias A; Hollmann, Christina; Ramesh, Niraja; Depner, Harald; Lützkendorf, Janine; Matkovic, Tanja; Götz, Torsten; Bergeron, Dominique D; Schmoranzer, Jan; Goettfert, Fabian; Holt, Mathew; Wahl, Markus C; Hell, Stefan W; Scheiffele, Peter; Walter, Alexander M; Loll, Bernhard; Sigrist, Stephan J

    2015-01-01

    Assembly and maturation of synapses at the Drosophila neuromuscular junction (NMJ) depend on trans-synaptic neurexin/neuroligin signalling, which is promoted by the scaffolding protein Syd-1 binding to neurexin. Here we report that the scaffold protein spinophilin binds to the C-terminal portion of neurexin and is needed to limit neurexin/neuroligin signalling by acting antagonistic to Syd-1. Loss of presynaptic spinophilin results in the formation of excess, but atypically small active zones. Neuroligin-1/neurexin-1/Syd-1 levels are increased at spinophilin mutant NMJs, and removal of single copies of the neurexin-1, Syd-1 or neuroligin-1 genes suppresses the spinophilin-active zone phenotype. Evoked transmission is strongly reduced at spinophilin terminals, owing to a severely reduced release probability at individual active zones. We conclude that presynaptic spinophilin fine-tunes neurexin/neuroligin signalling to control active zone number and functionality, thereby optimizing them for action potential-induced exocytosis. PMID:26471740

  17. Root-zone acidity and nitrogen source affects Typha latifolia L. growth and uptake kinetics of ammonium and nitrate.

    PubMed

    Brix, Hans; Dyhr-Jensen, Kirsten; Lorenzen, Bent

    2002-12-01

    The NH(4)(+) and NO(3)(-) uptake kinetics by Typha latifolia L. were studied after prolonged hydroponics growth at constant pH 3.5, 5.0, 6.5 or 7.0 and with NH(4)(+) or NO(3)(-) as the sole N-source. In addition, the effects of pH and N source on H(+) extrusion and adenine nucleotide content were examined. Typha latifolia was able to grow with both N sources at near neutral pH levels, but the plants had higher relative growth rates, higher tissue concentrations of the major nutrients, higher contents of adenine nucleotides, and higher affinity for uptake of inorganic nitrogen when grown on NH(4)(+). Growth almost completely stopped at pH 3.5, irrespective of N source, probably as a consequence of pH effects on plasma membrane integrity and H(+) influx into the root cells. Tissue concentrations of the major nutrients and adenine nucleotides were severely reduced at low pH, and the uptake capacity for inorganic nitrogen was low, and more so for NO(3)(-)-fed than for NH(4)(+)-fed plants. The maximum uptake rate, V(max), was highest for NH(4)(+) at pH 6.5 (30.9 micro mol h(-1) g(-1) root dry weight) and for NO(3)(-) at pH 5.0 (31.7 micro mol h(-1) g(-1) root dry weight), and less than 10% of these values at pH 3.5. The affinity for uptake as estimated by the half saturation constant, K((1/2)), was lowest at low pH for NH(4)(+) and at high pH for NO(3)(-). The changes in V(max) and K((1/2)) were thus consistent with the theory of increasing competition between cations and H(+) at low pH and between anions and OH(-) at high pH. C(min) was independent of pH, but slightly higher for NO(3)(-) than for NH(4)(+) (C(min)(NH(4)(+)) approximately 0.8 mmol m(-3); C(min)(NO(3)(-)) approximately 2.8 mmol m(-3)). The growth inhibition at low pH was probably due to a reduced nutrient uptake and a consequential limitation of growth by nutrient stress. Typha latifolia seems to be well adapted to growth in wetland soils where NH(4)(+) is the prevailing nitrogen compound, but very low p

  18. Group Problem Solving as a Zone of Proximal Development activity

    NASA Astrophysics Data System (ADS)

    Brewe, Eric

    2006-12-01

    Vygotsky described learning as a process, intertwined with development, which is strongly influenced by social interactions with others that are at differing developmental stages.i These interactions create a Zone of Proximal Development for each member of the interaction. Vygotsky’s notion of social constructivism is not only a theory of learning, but also of development. While teaching introductory physics in an interactive format, I have found manifestations of Vygotsky’s theory in my classroom. The source of evidence is a paired problem solution. A standard mechanics problem was solved by students in two classes as a homework assignment. Students handed in the homework and then solved the same problem in small groups. The solutions to both the group and individual problem were assessed by multiple reviewers. In many cases the group score was the same as the highest individual score in the group, but in some cases, the group score was higher than any individual score. For this poster, I will analyze the individual and group scores and focus on three groups solutions and video that provide evidence of learning through membership in a Zone of Proximal Development. Endnotes i L. Vygotsky -Mind and society: The development of higher mental processes. Cambridge, MA: Harvard University Press. (1978).

  19. Comparative Study of the Biological Activity of Allantoin and Aqueous Extract of the Comfrey Root.

    PubMed

    Savić, Vesna Lj; Nikolić, Vesna D; Arsić, Ivana A; Stanojević, Ljiljana P; Najman, Stevo J; Stojanović, Sanja; Mladenović-Ranisavljević, Ivana I

    2015-08-01

    This study investigates the biological activity of pure allantoin (PA) and aqueous extract of the comfrey (Symphytum officinale L.) root (AECR) standardized to the allantoin content. Cell viability and proliferation of epithelial (MDCK) and fibroblastic (L929) cell line were studied by using MTT test. Anti-irritant potential was determined by measuring electrical capacitance, erythema index (EI) and transepidermal water loss of artificially irritated skin of young healthy volunteers, 3 and 7 days after application of creams and gels with PA or AECR. Pure allantoin showed mild inhibitory effect on proliferation of both cell lines at concentrations 40 and 100 µg/ml, but more pronounced on MDCK cells. Aqueous extract of the comfrey root effect on cell proliferation in concentrations higher than 40 µg/ml was significantly stimulatory for L929 but inhibitory for MDCK cells. Pharmaceutical preparations that contained AECR showed better anti-irritant potential compared with PA. Creams showed better effect on hydration and EI compared with the gels that contained the same components. Our results indicate that the biological activity of the comfrey root extract cannot be attributed only to allantoin but is also likely the result of the interaction of different compounds present in AECR. Topical preparations that contain comfrey extract may have a great application in the treatment of skin irritation. PMID:25880800

  20. Latent nitrate reductase activity is associated with the plasma membrane of corn roots

    NASA Technical Reports Server (NTRS)

    Ward, M. R.; Grimes, H. D.; Huffaker, R. C.

    1989-01-01

    Latent nitrate reductase activity (NRA) was detected in corn (Zea mays L., Golden Jubilee) root microsome fractions. Microsome-associated NRA was stimulated up to 20-fold by Triton X-100 (octylphenoxy polyethoxyethanol) whereas soluble NRA was only increased up to 1.2-fold. Microsome-associated NRA represented up to 19% of the total root NRA. Analysis of microsomal fractions by aqueous two-phase partitioning showed that the membrane-associated NRA was localized in the second upper phase (U2). Analysis with marker enzymes indicated that the U2 fraction was plasma membrane (PM). The PM-associated NRA was not removed by washing vesicles with up to 1.0 M NACl but was solubilized from the PM with 0.05% Triton X-100. In contrast, vanadate-sensitive ATPase activity was not solubilized from the PM by treatment with 0.1% Triton X-100. The results show that a protein capable of reducing nitrate is embedded in the hydrophobic region of the PM of corn roots.

  1. Antimicrobial and Antileishmanial Activities of Diterpenoids Isolated from the Roots of Salvia deserta.

    PubMed

    Búfalo, Jennifer; Cantrell, Charles L; Jacob, Melissa R; Schrader, Kevin K; Tekwani, Babu L; Kustova, Tatyana S; Ali, Abbas; Boaro, Carmen S F

    2016-01-01

    Four diterpenes with biological activity were isolated from Salvia deserta roots. Taxodione was considered leishmanicidal with an IC50 value of 1.46 µM (0.46 mg/L) against Leishmania donovani and also exhibited antifungal and antimicrobial activities. Ferruginol displayed the greatest activity [24-h IC50 of 4.5 µM (1.29 mg/L)] against the fish pathogenic bacteria Streptococcus iniae. The crude extract fraction that contained the isolated compounds 7-O-acetylhorminone and horminone showed stronger in vitro antibacterial activity (1.3 mg/L for Staphylococcus aureus and 1.1 mg/L for methicillin-resistant S. aureus) than the compounds tested alone. 7-O-Acetylhorminone and horminone exhibited a synergistic effect against methicillin-resistant S. aureus (FIC of 0.2), and horminone had better activity against S. aureus with respect to other compounds isolated from S. deserta roots. In larvicidal bioassays, these extracts and isolated pure compounds did not show any activity at the highest dose of 125 mg/L against 1-d-old Aedes aegypti larvae. PMID:26308356

  2. Active Constituents from Liriope platyphylla Root against Cancer Growth In Vitro

    PubMed Central

    Wu, Chin-Chung; Cheng, Ti-Sheng; Kuo, Ching-Ying; Tsai, Yu-Chi; Chiang, Shang-Yu; Wong, Teng-Song; Wu, Yang-Chang; Chang, Fang-Rong

    2013-01-01

    Liriope spicata is a well-known herb in traditional Chinese medicine, and its root has been clinically demonstrated to be effective in the treatment of metabolic and neural disorders. The constituents isolated from Liriope have also recently been shown to possess anticancer activity, although the mechanism of which remains largely unknown. Here, we illustrate the anticancer activity of LPRP-9, one of the active fractions we fractionated from the Liriope platyphylla root part (LPRP) extract. Treatment with LPRP-9 significantly inhibited proliferation of cancer cell lines MCF-7 and Huh-7 and down-regulated the phosphorylation of AKT. LPRP-9 also activates the stress-activated MPAK, JNK, p38 pathways, the p53 cell-cycle checkpoint pathway, and a series of caspase cascades while downregulating expression of antiapoptotic factors Bcl-2, Bcl-XL, and survivin. Such activities strongly suggest a role for LPRP-9 in apoptosis and autophagy. We further purified and identified the compound (−)-Liriopein B from LPRP-9, which is capable of inhibiting AKT phosphorylation at low concentration. The overall result highlights the anticancer property of LPRP-9, suggests its mechanism for inhibition of proliferation and promotion of cell death for cancer cells via regulation of multitarget pathways, and denotes the importance of purifying components of fraction LPRP-9 to aid cancer therapy. PMID:23762164

  3. Geology of the Gahcho Kué kimberlite pipes, NWT, Canada: root to diatreme magmatic transition zones

    NASA Astrophysics Data System (ADS)

    Hetman, C. M.; Scott Smith, B. H.; Paul, J. L.; Winter, F.

    2004-09-01

    The Cambrian Gahcho Kué kimberlite cluster includes four main pipes that have been emplaced into the Archaean basement granitoids of the Slave Craton. Each of the steep-sided pipes were formed by the intrusion of several distinct phases of kimberlite in which the textures vary from hypabyssal kimberlite (HK) to diatreme-facies tuffisitic kimberlite breccia (TKB). The TKB displays many diagnostic features including abundant unaltered country rock xenoliths, pelletal lapilli, serpentinised olivines and a matrix composed of microlitic phlogopite and serpentine without carbonate. The HK contains common fresh olivine set in a groundmass composed of monticellite, phlogopite, perovskite, serpentine and carbonate. A number of separate phases of kimberlite display a magmatic textural gradation from TKB to HK, which is characterised by a decrease in the proportion of pelletal lapilli and country rock xenoliths and an increase in groundmass crystallinity, proportion of fresh olivine and the degree of xenolith digestion. The pipe shapes and infills of the Gahcho Kué kimberlites are similar to those of the classic South African pipes, particularly those of the Kimberley area. Similar intrusive magmatic emplacement processes are proposed in which the diatreme-zone results from the degassing, after breakthrough, of the intruding magma column. The transition zones represent 'frozen' degassing fronts. The style of emplacement of the Gahcho Kué kimberlites is very different from that of many other pipes in Canada such as at Lac de Gras, Fort à la Corne or Attawapiskat.

  4. Chemical Composition, Antioxidant and Cytotoxic Activities of Roots and Fruits of Berberis libanotica.

    PubMed

    El Hosry, Leina; Boyer, Laurent; Garayev, Elnur E; Mabrouki, Fathi; Bun, Sok-Siya; Debrauwer, Laurent; Auezova, Lizette; Cheble, Edmond; Elias, Riad

    2016-05-01

    Fourteen compounds belonging to different chemical classes were characterized in the roots and fruits extracts from Berberis libanotica, using the same HPLC-DAD-MS method. Thirteen were reported, for the first time, from the fruits whereas the roots contained mostly alkaloids of which 3 out of 5 are reported for the first time. Their structures were established on the basis of MS data as gallic acid (1), chlorogenic acid (2), delphinidin (3), oxyacanthine (4), rutin (5), hyperoside (6), berbamine (7), isoquercitrin (8), quercitrin (9), jatrorrhizine (10), palmatine (11), berberine (12), quercetin (13) and luteolin (14). Extracts containing compounds 4 and 7 showed significant cytotoxicity against the HT29 cell line with an IC50 of 12.2-26.1 μg/mL. Fruits extracts, due mostly to compounds 1 and 2, showed potent antioxidant activities with an EC50 of 0.0025-0.019 mg/mL. PMID:27319140

  5. Amplicon restriction patterns associated with nitrogenase activity of root nodules for selection of superior Myrica seedlings.

    PubMed

    Yanthan, Mhathung; Misra, Arvind K

    2013-11-01

    Trees of Myrica sp. grow abundantly in the forests of Meghalaya, India. These trees are actinorhizal and harbour nitrogen-fixing Frankia in their root nodules and contribute positively towards the enhancement of nitrogen status of forest areas. They can be used in rejuvenation of mine spoils and nitrogen-depleted fallow lands generated due to slash and burn agriculture practiced in the area. We have studied the association of amplicon restriction patterns (ARPs) of Myrica ribosomal RNA gene and internal transcribed spacer (ITS) region and nitrogenase activity of its root nodules. We found that ARPs thus obtained could be used as markers for early screening of seedlings that could support strains of Frankia that fix atmospheric nitrogen more efficiently. PMID:24287658

  6. Post-Coital Antifertility Activity of Hibiscus rosa-sinensis Linn. roots.

    PubMed

    Vasudeva, Neeru; Sharma, S K

    2008-03-01

    Ancient literature mentions the use of a number of plants/preparations for fertility regulation. Some local contraceptive agents have also been described in Ayurvedic and Unani texts. Documented experiments or clinical data are, however, lacking. Therefore, the present study was undertaken to explore the antifertility and estrogenic activity of ethanolic extract of the roots of Hibiscus rosa-sinensis Linn. A strong anti-implantation (inhibition 100%) and uterotropic activity was observed at the dose level of 400 mg/kg body weight. Histological studies were carried out to confirm this effect. PMID:18317554

  7. Antimicrobial activity and brine shrimp toxicity of extracts of Terminalia brownii roots and stem

    PubMed Central

    Mbwambo, Zakaria H; Moshi, Mainen J; Masimba, Pax J; Kapingu, Modest C; Nondo, Ramadhani SO

    2007-01-01

    Background Ternimalia brownii Fresen (Combretaceae) is widely used in traditional medicine to treat bacterial, fungal and viral infections. There is a need to evaluate extracts of this plant in order to provide scientific proof for it's wide application in traditional medicine system. Methods Extraction of stem bark, wood and whole roots of T. brownii using solvents of increasing polarity, namely, Pet ether, dichloromethane, dichloromethane: methanol (1:1), methanol and aqua, respectively, afforded dry extracts. The extracts were tested for antifungal and antibacterial activity and for brine shrimp toxicity test. Results Extracts of the stem bark, wood and whole roots of T. brownii exhibited antibacterial activity against standard strains of Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Klebsiella pneumoniae, Salmonella typhi, and Bacillus anthracis and the fungi, Candida albicans and Cryptococcus neoformans. Aqueous extracts exhibited the strongest activity against both bacteria and fungi. Extracts of the roots and stem bark exhibited relatively mild cytotoxic activity against brine shrimp larvae with LC50 values ranging from 113.75–4356.76 and 36.12–1458.81 μg/ml, respectively. The stem wood extracts exhibited the highest toxicity against the shrimps (LC50 values 2.58–14.88 μg/ml), while that of cyclophosphamide, a standard anticancer drug, was 16.33 (10.60–25.15) μg/ml. Conclusion These test results support traditional medicinal use of, especially, aqueous extracts for the treatment of conditions such as diarrhea, and gonorrhea. The brine shrimp results depict the general trend among plants of the genus Terminalia, which are known to contain cytotoxic compounds such as hydrolysable tannins. These results warrant follow-up through bioassay-directed isolation of the active principles. PMID:17394672

  8. CNS activity of aqueous extract of root of Cissus quadrangularis Linn. (Vitaceae).

    PubMed

    Kumar, Rajesh; Sharma, Ashish Kumar; Saraf, Shubhini A; Gupta, Rajiv

    2010-03-01

    In Ayurveda, Cissus quadrangularis Linn. is used to treat anorexia, asthma, sickle cell, colds, pain, and malaria. Aqueous C. quadrangularis extract was evaluated in vivo for its antiepileptic activity by using the maximal electroshock and isonicotinic hydrazide acid models, for its analgesic activity by using the hot plate method, and for its smooth muscle relaxant activity by using the rotarod method. Adult male Swiss mice were used for this study and animals were divided into 6 animals per group. Doses of 250 mg/kg body weight and 500 mg/kg body weight protected the mice against maximal electroshock seizure, and delayed the onset time of seizures induced by isonicotinic hydrazide acid. Prominent analgesic activity was observed using the hot plate method. The paw licking time was delayed significantly. The extract also displayed prominent smooth muscle relaxant activity. The results suggest that the aqueous extracts of C. quadrangularis roots possess anticonvulsant, analgesic, and smooth muscle relaxant properties. PMID:22435569

  9. Antimalarial activity of fractions of aqueous extract of Acacia nilotica root

    PubMed Central

    Alli, Lukman Adewale; Adesokan, Abdulfatai Ayoade; Salawu, Adeola Oluwakanyinsola

    2016-01-01

    Background: The problem of resistance of malarial parasites to available antimalarial drugs makes the development of new drugs imperative, with natural plant products providing an alternative source for discovering new drugs. Aim: To evaluate the antimalarial activity of eluted fractions of Acacia nilotica root extract and determine the phytochemicals responsible for its antimalarial activity. Materials and Methods: The extract was eluted successively in gradients of solvent mixture (hexane, ethyl acetate, and methanol) in multiples of 100 ml, and each fraction was collected separately. Eluates that showed similar thin layer chromatographic profiles and Rf values were combined to produce 4 main fractions (F-1, F-2, F-3, and F-4), which were tested separately for antimalarial activity using the curative test. Changes in body weight, temperature, and packed cell volume (PCV) were also recorded. Results: Fraction F-1 of A. nilotica at 50 and 100 mg/kg b/w produced significant and dose-dependent reduction in parasite count in Plasmodium berghei infected mice compared to the control, and also significantly increased the survival time of the mice compared to the control group. This fraction also ameliorated the malaria-induced anemia by improving PCV in treated mice. Conclusion: Antimalarial activity of extract of A. nilotica root is probably localized in the F-1 fraction of the extract, which was found to be rich in alkaloids and phenolics. Further study will provide information on the chemical properties of the active metabolites in this fraction. PMID:27104040

  10. Effects of Tagetes patula on Active and Inactive Stages of Root-Knot Nematodes.

    PubMed

    Marahatta, Sharadchandra P; Wang, Koon-Hui; Sipes, Brent S; Hooks, Cerruti R R

    2012-03-01

    Although marigold (Tagetes patula) is known to produce allelopathic compounds toxic to plant-parasitic nematodes, suppression of Meloidogyne incognita can be inconsistent. Two greenhouse experiments were conducted to test whether marigold is more effective in suppressing Meloidogyne spp. when it is active rather than dormant. Soils infested with Meloidogyne spp. were collected and conditioned in the greenhouse either by 1) keeping the soil dry (DRY), 2) irrigating with water (IRR), or 3) drenching with cucumber (Cucumis sativus) leachate (CL) for 5 wk. These soils were then either planted with cucumber, marigold or remained bare for 10 wk. Suppression of nematode by marigold was then assayed using cucumber. DRY conditioning resulted in the highest number of inactive nematodes, whereas CL and IRR had higher numbers of active nematodes than DRY. At the end of the cucumber bioassay, marigold suppressed the numbers of Meloidogyne females in cucumber roots if the soil was conditioned in IRR or CL, but not in DRY. However, in separate laboratory assays, marigold root leachate slightly reduced M. incognita J2 activity but did not reduce egg hatch (P > 0.05). These finding suggest that marigold can only suppress Meloidogyne spp. when marigold is actively growing. This further suggests that marigold will more efficiently suppress Meloidogyne spp. if planted when these nematodes are in active stage. PMID:23482862

  11. Effect of phosphoric fertilizer and starter rates of nitrogen fertilizers on the phosphatase activity in the rhizosphere soil and nonlignified soybean roots under drought conditions

    NASA Astrophysics Data System (ADS)

    Emnova, E. E.; Daraban, O. V.; Bizgan, I. V.; Toma, S. I.

    2014-02-01

    In a small-plot field experiment, two soybean ( Glycine max L.) cultivars were grown on a calcareous chernozem under the drought conditions of 2012 with the preplanting application of simple superphosphate (Ps) at 60 kg/ha, urea (Nu) at 10 and 20 kg/ha, and ammonium nitrate (Nan) at 20 kg/ha. The phosphatase activity was measured in the rhizosphere soil (0- to 20-cm layer) and the fine nonlignified roots of soybean plants at the blossoming and pod-formation stages (the soil water content was 19 and 33% of the total water capacity, respectively). The maximum content of available phosphorus in the rhizosphere of both soybean cultivars (4.3-4.8 mg/100 g dry soil) was found at the simultaneous application of Ps and Nu20. Higher activities of the predominant phosphatases (alkaline phosphatase in the rhizosphere and acid phosphatase in the roots) were observed in the root-inhabited zone of the soil under the Indra cultivar compared to the Aura cultivar, which correlated with the lower content of available phosphorus in the rhizosphere soil (especially at the simultaneous application of Ps and Nu20) and the higher productivity of this cultivar in this treatment.

  12. Activity profiling reveals changes in the diversity and activity of proteins in Arabidopsis roots in response to nematode infection.

    PubMed

    Hütten, Marion; Geukes, Melanie; Misas-Villamil, Johana C; van der Hoorn, Renier A L; Grundler, Florian M W; Siddique, Shahid

    2015-12-01

    Cyst nematodes are obligate, sedentary endoparasites with a highly specialised biology and a huge economic impact in agriculture. Successful parasitism involves morphological and physiological modifications of the host cells which lead to the formation of specialised syncytial feeding structures in roots. The development of the syncytium is aided by a cocktail of nematode effectors that manipulate the host plant activities in a complex network of interactions through post-translational modifications. Traditional transcriptomic and proteomic approaches cannot display this functional proteomic information. Activity-based protein profiling (ABPP) is a powerful technology that can be used to investigate the activity of the proteome through activity-based probes. To better understand the functional proteomics of syncytium, ABPP was conducted on syncytia induced by the beet cyst nematode Heterodera schachtii in Arabidopsis roots. Our results demonstrated that the activity of several enzymes is differentially regulated in the syncytium compared to the control roots. Among those specifically activated in the syncytium are a putative S-formyl-glutathione hydrolase (SFGH), a putative methylesterase (MES) and two unidentified enzymes. In contrast, the activities of vacuolar processing enzymes (VPEs) are specifically suppressed in the syncytium. Competition labelling, quantitative gene expression and T-DNA knock-out mutants were used to further characterise the roles of the differentially regulated enzymes during plant-nematode interaction. In conclusion, our study will open the door to generate a comprehensive and integrated view of the host-pathogen warfare that results in the formation of long-term feeding sites for pathogens. PMID:26408809

  13. Crustal root beneath the Rif Cordillera as imaged from both active seismic data and teleseismic receiver functions.

    NASA Astrophysics Data System (ADS)

    Diaz, Jordi; Gil, Alba; Gallart, Josep; Carbonell, Ramon; Harnafi, Mimoun; Levander, Alan

    2015-04-01

    The Rif cordillera forms, together with the Betic ranges, one of the tightest orogenic arcs on Earth. This continental boundary zone is dominated now by the slow convergence between Nubia and Eurasia, but with clear evidences of extensional tectonics. One of the missing elements to constrain the complex geodynamics of the Gibraltar Arc System is the knowledge of the crustal architecture beneath northern Morocco. In the last decade a major effort has been done in this sense, from active and passive seismics. We compile here the recent results available from the Rif domains. Two 330 km long wide angle DSS profiles were recorded end of 2011 across the Rif in NS and EW transects within the Rifsis project, complemented by onshore recordings of the Gassis-WestMed marine profiles. At the same period, BB seismic arrays were deployed in the area within Topo-Iberia and Picasso projects, allowing receiver function analyses of crustal depths. The ray-tracing modeling of the Rifsis profiles reveal a large Moho step and an area of crustal thickening both in EW and NS directions, grossly coincident with the Bouguer gravity anomalies. The deployment logistics allowed that all the stations recorded all the shots, thus providing useful offline data. We will use here all available in-line and offline data to provide a map of the crustal thickness in northern Morocco. We combined two approaches: i) a hyperbolic time reduction applied to the seismic data, resulting in low-fold stacks in which the reflections from the Moho should appear as subhorizontal lines; ii) the arrival times of the observed PmP phases allow, assuming a mean crustal velocity, to assign a midpoint crustal thickness to each lecture. Although some uncertainties may be inherent to those approaches, a large crustal root, reaching more than 50 km, is well documented in the central part of the Rif Cordillera, close to the zone where the Alboran slab may still be attached to the lithosphere. We also compared these results

  14. Effect of lipid/polysaccharide ratio on surface activity of model root mucilage in its solid and liquid states

    NASA Astrophysics Data System (ADS)

    Chen, Fengxian; Arye, Gilboa

    2016-04-01

    The rhizosphere can be defined as the volume of soil around living roots, which is influenced by root activity. The biological, chemical and physical conditions that prevail in the rhizosphere are significantly different from those of the bulk soil. Plant roots can release diverse organic materials in the rhizosphere which may have different effects on its bio-chemo-physical activity. Among these exudates is the root mucilage which can play a role on the maintenance of root-soil contact, lubrication of the root tip, protection of roots from desiccation and disease, stabilization of soil micro-aggregates and the selective absorption and storage of ions. The surface activity of the root mucilage at the liquid-air interface deduced from its surface tension depression relative to water, implying on its amphiphilic nature. Consequently as the rhizosphere dry out, hydrophobic functional groups may exhibit orientation at the solid-air interface and thus, the wettability of the rhizosphere may temporarily decrease. The major fraction of the root mucilage comprise of polysaccharides and to a much lesser extent, amino acids, organic acids, and phospholipids. The most frequent polysaccharide and phospholipids detected in root mucilage are polygalacturonic acid (PGA) and Phosphatidylcholine (PC), respectively. The latter, is thought to be main cause for the surface active nature of root mucilage. Nevertheless, the role and function of root mucilage in the rhizosphere is commonly studied based on model root mucilage that comprise of only one component, where the most frequent ones are PGA or PC (or lecithin). The main objective of this study was to quantify the effect of concentration and PGA/PC ratios on the wettability of a model rhizosphere soil and the surface tension of the model root mucilage at the liquid-air interface. The PGA/PC mixtures were measured for their equilibrium and dynamic surface tension using the Wilhelmy-Plate method. Quartz sand or glass slides were

  15. Genetic and chemical reductions in protein phosphatase activity alter auxin transport, gravity response, and lateral root growth

    NASA Technical Reports Server (NTRS)

    Rashotte, A. M.; DeLong, A.; Muday, G. K.; Brown, C. S. (Principal Investigator)

    2001-01-01

    Auxin transport is required for important growth and developmental processes in plants, including gravity response and lateral root growth. Several lines of evidence suggest that reversible protein phosphorylation regulates auxin transport. Arabidopsis rcn1 mutant seedlings exhibit reduced protein phosphatase 2A activity and defects in differential cell elongation. Here we report that reduced phosphatase activity alters auxin transport and dependent physiological processes in the seedling root. Root basipetal transport was increased in rcn1 or phosphatase inhibitor-treated seedlings but showed normal sensitivity to the auxin transport inhibitor naphthylphthalamic acid (NPA). Phosphatase inhibition reduced root gravity response and delayed the establishment of differential auxin-induced gene expression across a gravity-stimulated root tip. An NPA treatment that reduced basipetal transport in rcn1 and cantharidin-treated wild-type plants also restored a normal gravity response and asymmetric auxin-induced gene expression, indicating that increased basipetal auxin transport impedes gravitropism. Increased auxin transport in rcn1 or phosphatase inhibitor-treated seedlings did not require the AGR1/EIR1/PIN2/WAV6 or AUX1 gene products. In contrast to basipetal transport, root acropetal transport was normal in phosphatase-inhibited seedlings in the absence of NPA, although it showed reduced NPA sensitivity. Lateral root growth also exhibited reduced NPA sensitivity in rcn1 seedlings, consistent with acropetal transport controlling lateral root growth. These results support the role of protein phosphorylation in regulating auxin transport and suggest that the acropetal and basipetal auxin transport streams are differentially regulated.

  16. Promise for plant pest control: root-associated pseudomonads with insecticidal activities

    PubMed Central

    Kupferschmied, Peter; Maurhofer, Monika; Keel, Christoph

    2013-01-01

    Insects are an important and probably the most challenging pest to control in agriculture, in particular when they feed on belowground parts of plants. The application of synthetic pesticides is problematic owing to side effects on the environment, concerns for public health and the rapid development of resistance. Entomopathogenic bacteria, notably Bacillus thuringiensis and Photorhabdus/Xenorhabdus species, are promising alternatives to chemical insecticides, for they are able to efficiently kill insects and are considered to be environmentally sound and harmless to mammals. However, they have the handicap of showing limited environmental persistence or of depending on a nematode vector for insect infection. Intriguingly, certain strains of plant root-colonizing Pseudomonas bacteria display insect pathogenicity and thus could be formulated to extend the present range of bioinsecticides for protection of plants against root-feeding insects. These entomopathogenic pseudomonads belong to a group of plant-beneficial rhizobacteria that have the remarkable ability to suppress soil-borne plant pathogens, promote plant growth, and induce systemic plant defenses. Here we review for the first time the current knowledge about the occurrence and the molecular basis of insecticidal activity in pseudomonads with an emphasis on plant-beneficial and prominent pathogenic species. We discuss how this fascinating Pseudomonas trait may be exploited for novel root-based approaches to insect control in an integrated pest management framework. PMID:23914197

  17. WETLAND RESTORATION AND REMEDIATION IN SOUTHWEST LOUISIANA MARSHES: A STUDY OF SOIL ELEVATION, VERTICAL ACCRETION, SHALLOW SUBSIDENCE AND ROOT ZONE INFLUENCES IN MARSHES RESTORED USING A VARIETY OF TECHNIQUES

    EPA Science Inventory

    For Project 1, we will continue sampling of all restoration sites on a quarterly basis. We also will present findings at the 2003 Society of Wetland Scientists Meeting. We will prepare a final data set for a peer-reviewed journal publication. Below-ground root zone...

  18. Geomorphic Indices in the Assessment of Tectonic Activity in Forearc of the Active Mexican Subduction Zone

    NASA Astrophysics Data System (ADS)

    Gaidzik, K.; Ramirez-Herrera, M. T.

    2015-12-01

    Rapid development of GIS techniques and constant advancement of digital elevation models significantly improved the accuracy of extraction of information on active tectonics from landscape features. Numerous attempts were made to quantitatively evaluate recent tectonic activity using GIS and DEMs, and a set of geomorphic indices (GI), however these studies focused mainly on sub-basins or small-scale areal units. In forearc regions where crustal deformation is usually large-scale and do not concentrate only along one specific fault, an assessment of the complete basin is more accurate. We present here the first attempt to implement thirteen GI in the assessment of active tectonics of a forearc region of an active convergent margin using the entire river basins. The GIs were divided into groups: BTAI - basin geomorphic indices (reflecting areal erosion vs. tectonics) and STAI - stream geomorphic indices (reflecting vertical erosion vs. tectonics). We calculated selected indices for 9 large (> 450 km2) drainage basins. Then we categorized the obtained results of each index into three classes of relative tectonic activity: 1 - high, 2 - moderate, and 3 - low. Finally we averaged these classes for each basin to determine the tectonic activity level (TAI). The analysis for the case study area, the Guerrero sector at the Mexican subduction zone, revealed high tectonic activity in this area, particularly in its central and, to a lesser degree, eastern part. This pattern agrees with and is supported by interpretation of satellite images and DEM, and field observations. The results proved that the proposed approach indeed allows identification and recognition of areas witnessing recent tectonic deformation. Moreover, our results indicated that, even though no large earthquake has been recorded in this sector for more than 100 years, the area is highly active and may represent a seismic hazard for the region.

  19. Antioxidant activity of oligosaccharide ester extracted from Polygala tenuifolia roots in senescence-accelerated mice.

    PubMed

    Liu, Ping; Hu, Yuan; Guo, Dai-Hong; Lu, Bao-Rong; Rahman, Khalid; Mu, Li-Hua; Wang, Dong-Xiao

    2010-07-01

    The constituents of the ethanol extract from the root of Polygala tenuifolia Willd. (Polygalaceae) were investigated for antioxidant activity in senescence-accelerated mice. Consequently, two relevant samples were obtained, a fraction separated by macroporous resin (YZ-OE), and a major pure crystal of 3,6'-disinapoyl sucrose (DISS). Based on HPLC-ESI-MS analysis, the most constituents in the YZ-OE fraction from the extract of P. tenuifolia were oligosaccharide esters. The antioxidant activities of these two samples were evaluated using the accelerated senescence-prone, short-lived mice (SAMP) in vivo. The activities of superoxide dismutase (SOD) and glutathione peroxidase (GSH-PX) were increased significantly in SAMP mice fed oligosaccharide esters (YZ-OE 50 mg/kg) and its constituents (DISS 50 mg/kg). However, the content of malondialdehyde (MDA) was increased in the blood and liver of SAMP mice. But when given YZ-OE, it could be decreased, by 44.3% and 47.5%, respectively, compared with the SAMP model. Results from the analyses indicated that the oligosaccharide esters (YZ-OE) from roots of P. tenuifolia had a high in vivo antioxidant activity. PMID:20645784

  20. Root replacement with stentless Freestyle bioprostheses for active endocarditis: a single centre experience†

    PubMed Central

    Miceli, Antonio; Croccia, Mariagrazia; Simeoni, Simone; Varone, Egidio; Murzi, Michele; Farneti, Pier Andrea; Solinas, Marco; Glauber, Mattia

    2013-01-01

    OBJECTIVES Few studies have examined the use of stentless Freestyle bioprostheses in patients with active valve endocarditis (VE). The aim of this study was to evaluate outcomes of stentless Freestyle bioprostheses in patients undergoing full-root replacement. METHODS From February 2000 to June 2010, 180 patients with VE underwent cardiac surgery at our institution, of which 71 (39.5%) had prosthetic VE. Eighteen patients underwent full-root replacement with Freestyle bioprostheses: 3 patients (16%) had native aortic VE, 14 (78%) had aortic prosthetic VE and 1 (6%) had mitral and aortic prosthetic VE. Mean age was 66.7 ± 10.1, M/F: 6/12, mean logistic EuroSCORE 36.4 ± 21.6. Eight patients (42%) underwent concomitant procedures (two mitral valve replacements, three ascending aorta replacements, one coronary artery bypass grafting (CABG), one ventricular septal disease (VSD) repair, one CABG + ascending aorta + VSD repair). RESULTS Two patients (11%) died in-hospital. At the median follow-up of 24 months (range 1–113 months), no death occurred and freedom from reoperation was 87.5% (2 patients for aortic root pseudo-aneurysm at 1 and 23 months). All patients are in NYHA functional class I and have satisfactory echocardiographic data (EF 54.3 ± 8%, peak and mean trans-prosthetic gradients 12 ± 6.7 mmHg and 7.5 ± 3.6 mmHg) with 100% freedom recurrence of VE. CONCLUSIONS Our experience shows that root replacement with Freestyle stentless bioprostheses in patient with VE, is associated with low rates of early and mid-term mortality, good haemodynamic performance and low rates of valve-related morbidity as well as low recurrence of infection. PMID:23103719

  1. Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.

    PubMed

    Kobayashi, Takanori; Itai, Reiko Nakanishi; Senoura, Takeshi; Oikawa, Takaya; Ishimaru, Yasuhiro; Ueda, Minoru; Nakanishi, Hiromi; Nishizawa, Naoko K

    2016-07-01

    Under low iron availability, plants induce the expression of various genes involved in iron uptake and translocation at the transcriptional level. This iron deficiency response is affected by various plant hormones, but the roles of jasmonates in this response are not well-known. We investigated the involvement of jasmonates in rice iron deficiency responses. High rates of jasmonate-inducible genes were induced during the very early stages of iron deficiency treatment in rice roots. Many jasmonate-inducible genes were also negatively regulated by the ubiquitin ligases OsHRZ1 and OsHRZ2 and positively regulated by the transcription factor IDEF1. Ten out of 35 genes involved in jasmonate biosynthesis and signaling were rapidly induced at 3 h of iron deficiency treatment, and this induction preceded that of known iron deficiency-inducible genes involved in iron uptake and translocation. Twelve genes involved in jasmonate biosynthesis and signaling were also upregulated in HRZ-knockdown roots. Endogenous concentrations of jasmonic acid and jasmonoyl isoleucine tended to be rapidly increased in roots in response to iron deficiency treatment, whereas these concentrations were higher in HRZ-knockdown roots under iron-sufficient conditions. Analysis of the jasmonate-deficient cpm2 mutant revealed that jasmonates repress the expression of many iron deficiency-inducible genes involved in iron uptake and translocation under iron sufficiency, but this repression is partly canceled under an early stage of iron deficiency. These results indicate that jasmonate signaling is activated during the very early stages of iron deficiency, which is partly regulated by IDEF1 and OsHRZs. PMID:27143046

  2. Antioxidant and anti-inflammatory activities of zinc oxide nanoparticles synthesized using Polygala tenuifolia root extract.

    PubMed

    Nagajyothi, P C; Cha, Sang Ju; Yang, In Jun; Sreekanth, T V M; Kim, Kwang Joong; Shin, Heung Mook

    2015-05-01

    The exploitation of various plant materials for the green synthesis of nanoparticles is considered an eco-friendly technology because it does not involve toxic chemicals. In this study, zinc oxide nanoparticles (ZnO NPs) were synthesized using the root extract of Polygala tenuifolia. Synthesized ZnO NPs were characterized by UV-Vis spectroscopy, FTIR, TGA, TEM, SEM and EDX. Anti-inflammatory activity was investigated in LPS-stimulated RAW 264.7 macrophages, whereas antioxidant activity was examined using a DPPH free radical assay. ZnO NPs demonstrated moderate antioxidant activity by scavenging 45.47% DPPH at 1mg/mL and revealed excellent anti-inflammatory activity by dose-dependently suppressing both mRNA and protein expressions of iNOS, COX-2, IL-1β, IL-6 and TNF-α. PMID:25777265

  3. Principles of root bark of Hippocratea excelsa (Hippocrataceae) with gastroprotective activity.

    PubMed

    Navarrete, Andrés; Trejo-Miranda, José Luis; Reyes-Trejo, Lino

    2002-03-01

    The aqueous and ethanol extracts of the root bark of Hippocratea excelsa HBK. Locally known as 'Cancerina', showed an important gastroprotective effect in several experimental ulcer models in rats. Fractionation of the methanol extract led to four pools of active fractions (F1-F4). Sitosterol-3-O-beta-glucoside, beta-sitosterol and (-) epicatechin were isolated from the active fractions and showed an important gastroprotective activity (93.4,85.7 and 72.1% of gastroprotection, respectively), whereas bismuth subsalicylate, used as positive control, showed 46.2% of gastroprotection. A mixture of alpha-amyrin and beta-amyrin showed 50% of gastroprotection. Friedelin, canophyllal and canophyllol were isolated from the active fractions, but they were inactive as gastroprotective compounds. These results provide additional support for the popular use of this plant as an antiulcer remedy in the Mexican traditional medicine. PMID:11849847

  4. Antinociceptive activity of Euadenia trifoliolata (Schum. & Thonn.) Oliv. leaves and roots in mice.

    PubMed

    Sofidiya, Margaret O; Oloruntola, Opeyemi M; Sofola, Ikepo; Fageyinbo, Muyiwa S

    2016-07-01

    The leaves and roots of Euadenia trifoliolata are used in Nigeria traditional medicine for the treatment of ear ache, head ache and inflammation. The aim of the study was to evaluate the antinociceptive activity of ethanolic extract of the leaves (EL) and roots (ER) of E. trifoliolata in mice. Oral toxicity testing was performed using OECD guidelines. Antinociceptive effect was studied in mice using acetic acid-induced writhing, formalin, tail immersion and hot plate tests. Total polyphenolic contents were determined using standard methods. No mortality was recorded 24 h after oral administration of both EL and ER up to 5000 mg/kg. At the dose of 50, 100 and 200 mg/kg, administration of EL and ER resulted in significant reduction in the number of writhes compared to control. The percentage inhibition of writhings was calculated as 35.67%, 46.71% and 67.94% (EL) and 55.41%, 57.32% and 72.61% (ER), respectively. In hot plate test, EL and ER showed statistically significant antinociceptive effect, although low percentage inhibition (<50%) was recorded for ER at all the doses tested. Only EL (100 and 200 mg/kg) significantly (p < 0.001) increased the reaction time in tail immersion test. Both extracts significantly (p < 0.001) reduced the licking time in both phases of formalin test compared to control. The content of total phenolic, flavonoid and proanthocyanidin varies between the two extracts and may be the basis of the observed antinociceptive effect. The results indicate antinociceptive activity for the leaves and roots of E. trifoliolata, with the extract of the leaves showing better activity. PMID:27419095

  5. 78 FR 75331 - Foreign-Trade Zone (FTZ) 100-Dayton, Ohio; Notification of Proposed Production Activity; THOR...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-11

    ... Foreign-Trade Zones Board Foreign-Trade Zone (FTZ) 100--Dayton, Ohio; Notification of Proposed Production Activity; THOR Industries, Inc. (Commercial Bus Manufacturing); Jackson Center, Ohio The Greater Dayton Foreign-Trade Zone, Inc., grantee of FTZ 100, submitted a notification of proposed production activity...

  6. Clauraila E from the roots of Clausena harmandiana and antifungal activity against Pythium insidiosum.

    PubMed

    Sriphana, Uraiwan; Thongsri, Yordhathai; Prariyachatigul, Chularut; Pakawatchai, Chaveng; Yenjai, Chavi

    2013-09-01

    A new carbazole alkaloid named clauraila E (1) together with 8 known compounds were isolated from the methanol extract of the roots of Clausena harmandiana. All compounds were evaluated for antifungal activity against Pythium insidiosum using disc diffusion assay. Pythium insidiosum is a fungus-like microorganism, for which antifungals available now are not effective. It was found that compounds 3, 6, 7 and 9 could inhibit the mycelia growth of P. insidiosum. The results show convincingly that they may be lead to compounds for the development of probiotic or novel antifungal drugs. PMID:23595552

  7. Steroids from the roots of Asparagus officinalis and their cytotoxic activity.

    PubMed

    Huang, Xue-Feng; Lin, Yu-Ying; Kong, Ling-Yi

    2008-06-01

    One new (Sarsasapogenin O) and seven known steroids were isolated from the roots of Asparagus officinalis L. Their structures were elucidated on the basis of spectroscopic analysis, including various 2D-NMR techniques, hydrolysis, and by comparison of spectral data of known compounds. These compounds together with nine steroids which were previously isolated from this plant, were tested for cytotoxic activity. Among them, eight compounds displayed significant cytotoxicities against human A2780, HO-8910, Eca-109, MGC-803, CNE, LTEP-a-2, KB and mouse L1210 tumor cells. PMID:18713412

  8. Compensatory Root Water Uptake of Overlapping Root Systems

    NASA Astrophysics Data System (ADS)

    Agee, E.; Ivanov, V. Y.; He, L.; Bisht, G.; Shahbaz, P.; Fatichi, S.; Gough, C. M.; Couvreur, V.; Matheny, A. M.; Bohrer, G.

    2015-12-01

    Land-surface models use simplified representations of root water uptake based on biomass distributions and empirical functions that constrain water uptake during unfavorable soil moisture conditions. These models fail to capture the observed hydraulic plasticity that allows plants to regulate root hydraulic conductivity and zones of active uptake based on local gradients. Recent developments in root water uptake modeling have sought to increase its mechanistic representation by bridging the gap between physically based microscopic models and computationally feasible macroscopic approaches. It remains to be demonstrated whether bulk parameterization of microscale characteristics (e.g., root system morphology and root conductivity) can improve process representation at the ecosystem scale. We employ the Couvreur method of microscopic uptake to yield macroscopic representation in a coupled soil-root model. Using a modified version of the PFLOTRAN model, which represents the 3-D physics of variably saturated soil, we model a one-hectare temperate forest stand under natural and synthetic climatic forcing. Our results show that as shallow soil layers dry, uptake at the tree and stand level shift to deeper soil layers, allowing the transpiration stream demanded by the atmosphere. We assess the potential capacity of the model to capture compensatory root water uptake. Further, the hydraulic plasticity of the root system is demonstrated by the quick response of uptake to rainfall pulses. These initial results indicate a promising direction for land surface models in which significant three-dimensional information from large root systems can be feasibly integrated into the forest scale simulations of root water uptake.

  9. Shatavarins (containing Shatavarin IV) with anticancer activity from the roots of Asparagus racemosus

    PubMed Central

    Mitra, Shankar K.; Prakash, Neswi S.; Sundaram, Ramachandran

    2012-01-01

    Objectives: The anticancer activity of shatavarins (containing shatavarin IV) isolated from the roots of Asparagus racemosus (Wild) was evaluated using in vitro and in vivo experimental models. Material and Methods: The shatavarin IV was isolated from ethyl acetate insoluble fraction (AR-2B) of chloroform:methanol (2:1) (AR-2) extract of A. racemosus roots. The cytotoxicity (in vitro) of shatavarin IV and other shatavarins rich fraction was carried out using of MTT assay using MCF-7 (human breast cancer), HT-29 (human colon adenocarcinoma), and A-498 (human kidney carcinoma) cell lines. The in vivo anticancer activity of shatavarins (containing shatavarin IV) was evaluated against Ehrlich ascites carcinoma (EAC) tumor bearing mice. Results: The isolated shatavarin IV (84.69 %) along with shatavarins rich fraction, coded AR-2B containing 5.05% shatavarin IV showed potent cytotoxicity. Oral administration of AR-2B to tumor bearing mice at doses of 250 and 500 mg/kg body weight for 10 days, showed significant reduction in percent increase in body weight, tumor volume, packed cell volume, viable tumor cell count, and increased non-viable cell count when compared to the untreated mice of the EAC control group. The restoration of hematological parameters towards normalcy was also observed. Conclusion: The result suggests that the shatavarins (containing shatavarin IV) rich fraction (AR-2B) exhibits significant anticancer activity in both in vitro and in vivo experimental models. PMID:23248403

  10. [Effect of fibrous root extract of Coptis chinensis on soil microbes and enzyme activities].

    PubMed

    Li, Yang-Bo; He, Lin-Wei; Zhang, Wei; Wu, Ye-Kuan; Yuan, Ling; Huang, Jian-Guo

    2014-11-01

    Coptis chinensis is widely used as Chinese medicine herbs and serious soil problems occur after continual cultivation of this medicinal plant. In the preset experiment, fibrous root extract of C. chinensis (REC) was added into soil to study the effect of REC on microbes and enzyme activity in soil. The results showed that both bacteria and actinomycetes decreased by about 2 times in contrast to fungi, which increased by about 3 folds. Phosphorus bacteria, potassium bacteria, azotobacter, ammonia bacteria, and nitrifying bacteria were also reduced significantly by REC, suggesting the inhibition of nitrogen biofixation and supply, mobilization of phosphorus and potassium, ad plant growth promotion as REC added into soil. There were multiple influences of REC on soil enzyme activities. Invertase activity was stimulated, while urease was inhibited and dehydrogenase unchanged by REC, indicating the interference of biochemical reactions in soil. In addition, type and total content of phosphorus lipid fatty acids (PLFAs) , the signature of microbes, decreased while the ratio of bacterium to fungus PLFAs increased as REC increased in soil, which suggested that fungi increased relatively with bacteria decreased thereby leading to easy occurrence of crop fungus diseases following cultivation of C. chinensis. The decrease in diversity and evenness indexes of microbial community in soil by REC indicated soil ecosystem deterioration and reduction of microbial groups and densities in soil. Therefore, allelopathic chemicals released from the roots of C. chinensis could change microbial community structure and resulted in serious soil problems by continual cropping of this medicinal plant. PMID:25775794

  11. Satellite glial cells in dorsal root ganglia are activated in streptozotocin-treated rodents

    PubMed Central

    Hanani, Menachem; Blum, Erez; Liu, Shuangmei; Peng, Lichao; Liang, Shangdong

    2014-01-01

    Neuropathic pain is a very common complication in diabetes mellitus (DM), and treatment for it is limited. As DM is becoming a global epidemic it is important to understand and treat this problem. The mechanisms of diabetic neuropathic pain are largely obscure. Recent studies have shown that glial cells are important for a variety of neuropathic pain types, and we investigated what are the changes that satellite glial cells (SGCs) in dorsal root ganglia undergo in a DM type 1 model, induced by streptozotocin (STZ) in mice and rats. We carried out immunohistochemical studies to learn about changes in the activation marker glial fibrillary acidic protein (GFAP) in SGCs. We found that after STZ-treatment the number of neurons surrounded with GFAP-positive SGCs in dorsal root ganglia increased 4-fold in mice and 5-fold in rats. Western blotting for GFAP, which was done only on rats because of the larger size of the ganglia, showed an increase of about 2-fold in STZ-treated rats, supporting the immunohistochemical results. These results indicate for the first time that SGCs are activated in rodent models of DM1. As SGC activation appears to contribute to chronic pain, these results suggest that SGCs may participate in the generation and maintenance of diabetic neuropathic pain, and can serve as a potential therapeutic target. PMID:25312986

  12. Ultrasound-Assisted Extraction, Antioxidant and Anticancer Activities of the Polysaccharides from Rhynchosia minima Root.

    PubMed

    Jia, Xuejing; Zhang, Chao; Hu, Jie; He, Muxue; Bao, Jiaolin; Wang, Kai; Li, Peng; Chen, Meiwan; Wan, Jianbo; Su, Huanxing; Zhang, Qingwen; He, Chengwei

    2015-01-01

    Box-Behnken design (BBD), one of the most common response surface methodology (RSM) methods, was used to optimize the experimental conditions for ultrasound-assisted extraction of polysaccharides from Rhynchosia minima root (PRM). The antioxidant abilities and anticancer activity of purified polysaccharide fractions were also measured. The results showed that optimal extraction parameters were as follows: ultrasound exposure time, 21 min; ratio of water to material, 46 mL/g; ultrasound extraction temperature, 63 °C. Under these conditions, the maximum yield of PRM was 16.95%±0.07%. Furthermore, the main monosaccharides of purified fractions were Ara and Gal. PRM3 and PRM5 exhibited remarkable DPPH radical scavenging activities and reducing power in vitro. PRM3 showed strong inhibitory activities on the growth of MCF-7 cells in vitro. The above results indicate that polysaccharides from R. minima root have the potential to be developed as natural antioxidants and anticancer ingredients for the food and pharmaceutical industries. PMID:26610456

  13. Root cap-dependent gravitropic U-turn of maize root requires light-induced auxin biosynthesis via the YUC pathway in the root apex.

    PubMed

    Suzuki, Hiromi; Yokawa, Ken; Nakano, Sayuri; Yoshida, Yuriko; Fabrissin, Isabelle; Okamoto, Takashi; Baluška, František; Koshiba, Tomokazu

    2016-08-01

    Gravitropism refers to the growth or movement of plants that is influenced by gravity. Roots exhibit positive gravitropism, and the root cap is thought to be the gravity-sensing site. In some plants, the root cap requires light irradiation for positive gravitropic responses. However, the mechanisms regulating this phenomenon are unknown. We herein report that maize roots exposed to white light continuously for ≥1-2h show increased indole-3-acetic acid (IAA) levels in the root tips, especially in the transition zone (1-3mm from the tip). Treatment with IAA biosynthesis inhibitors yucasin and l-kynurenine prevented any increases in IAA content and root curvature under light conditions. Analyses of the incorporation of a stable isotope label from tryptophan into IAA revealed that some of the IAA in roots was synthesized in the root apex. Furthermore, Zmvt2 and Zmyuc gene transcripts were detected in the root apex. One of the Zmyuc genes (ZM2G141383) was up-regulated by light irradiation in the 0-1mm tip region. Our findings suggest that IAA accumulation in the transition zone is due to light-induced activation of Zmyuc gene expression in the 0-1mm root apex region. Light-induced changes in IAA levels and distributions mediate the maize root gravitropic U-turn. PMID:27307546

  14. Root cap-dependent gravitropic U-turn of maize root requires light-induced auxin biosynthesis via the YUC pathway in the root apex

    PubMed Central

    Suzuki, Hiromi; Yokawa, Ken