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Sample records for active stream channel

  1. Roughness coefficients for stream channels in Arizona

    USGS Publications Warehouse

    Aldridge, B.N.; Garrett, J.M.

    1973-01-01

           n in which V = mean cross-sectional velocity of flow, in feet per second; R = hydraulic radius at a cross section, which is the cross-sectional area divided by the wetter perimeter, in feet; Se = energy slope; and n = coefficient of roughness. Many research studies have been made to determine "n" values for open-channel flow (Carter and others, 1963). Guidelines for selecting coefficient of roughness for stream channels are given in most of the literature of stream-channel hydraulics, but few of the data relate directly to streams of Arizona, The U.S> Geological Survey, at the request of the Arizona Highway Department, assembled the color photographs and tables of the Manning "n" values in this report to aid highway engineers in the selection of roughness coefficients for Arizona streams. Most of the photographs show channel reaches for which values of "n" have been assigned by experienced Survey personnel; a few photographs are included for reaches where "n" values have been verified. Verified "n" values are computed from a known discharge and measured channel geometry. Selected photographs of stream channels for which "n" values have been verified are included in U.S. Geological Survey Water-Supply Paper 1849 (Barnes, 1967); stereoscopic slides of Barnes' (1967) photographs and additional photographs can be inspected at U.S> Geological Survey offices in: 2555 E. First Street, Tucson; and 5017 Federal Building, 230 N. First Avenue, Phoenix.

  2. Did ice streams carve martian outflow channels?

    USGS Publications Warehouse

    Lucchitta, B.K.; Anderson, D.M.; Shoji, H.

    1981-01-01

    Outflow channels on Mars1 are long sinuous linear depressions that occur mostly in the equatorial area (??30?? lat.). They differ from small valley networks2 by being larger and arising full born from chaotic terrains. Outflow channels resemble terrestrial stream beds, and their origin has generally been attributed to water3-5 in catastrophic floods6,7 or mudflows8. The catastrophic-flood hypothesis is derived primarily from the morphological similarities of martian outflow channels and features created by the catastrophic Spokane flood that formed the Washington scablands. These similarities have been documented extensively3,6,7, but differences of scale remain a major problemmartian channel features are on the average much larger than their proposed terrestrial analogues. We examine here the problem of channel origin from the perspective of erosional characteristics and the resultant landf orms created by former and present-day ice streams and glaciers on Earth. From morphologic comparisons, an ice-stream origin seems equally well suited to explain the occurrences and form of the outflow channels on Mars, and in contrast with the hydraulic hypothesis, ice streams and ice sheets produce terrestrial features of the same scale as those observed on Mars. ?? 1981 Nature Publishing Group.

  3. Dynamics of Transmissionlosses In Arid Stream Channels

    NASA Astrophysics Data System (ADS)

    Lange, J.; Mostert, A.; Wessels, C.

    In dry areas streamflow losses of ephemeral rivers are important contributions to groundwater recharge. The importance of these losses increases with aridity U in hy- perarid areas they often form the only freshwater source for aquifers sustaining water supply and life of the local population. However, just in these areas little is known about processes involved, as gauging and monitoring of surface water flow is made difficult due to the low population, remoteness of hydrological stations and short du- rations of floods. Using a physically based flow routing scheme on an event basis this study wants to contribute to the knowledge of the nature and dynamics of chan- nel transmission losses in large arid stream channels. In the 15500 km2 Kuiseb River catchment, western Namibia, annual rainfall decreases from 275 in the east to just about 0 in the west. With a distinct drop in altitude the downstream part of the basin makes up one of the driest regions in the world. A 200 km channel in the lower reaches of the Kuiseb River serves as an ideal field laboratory to simulate the transmission of flash floods because of the following reasons: i) Almost 20 years of flow records up and downstream ii) Negligible lateral inflow along the reach due to hyperarid condi- tions iii) Comparatively frequent flows due to the semiarid headwaters Hydrographs of two upstream stations serve as input for the routing scheme in a 5 min time step. Geometric information required is taken from aerial photography, topographical maps and surveyed cross sections. At the downstream end of the reach 20 simulated hy- drographs are compared with gauged events. Without calibration the routing scheme nicely documents that small floods (< 60-80 m3/s) are not significantly reduced, if they travel on a wet channel, while under the same circumstances large floods (> 120- 140 m3/s) loose up to 50% of their runoff peak. This difference is important for the assessment of groundwater recharge and may be

  4. THERMAL HETEROGENEITY, STREAM CHANNEL MORPHOLOGY, AND SALMONID ABUNDANCE IN NORTHEASTERN OREGON STREAMS

    EPA Science Inventory

    Heterogeneity in stream water temperatures created by local influx of cooler subsurface waters into geomorphically complex stream channels was associated with increased abundance of rainbow trout (Oncorhynchus mykiss) and chinook salmon (O. tshawytscha) in northeastern Oregon. Th...

  5. Measurement of stream channel habitat using sonar

    USGS Publications Warehouse

    Flug, M.; Seitz, H.; Scott, J.

    1998-01-01

    An efficient and low cost technique using a sonar system was evaluated for describing channel geometry and quantifying inundated area in a large river. The boat-mounted portable sonar equipment was used to record water depths and river width measurements for direct storage on a laptop computer. The field data collected from repeated traverses at a cross-section were evaluated to determine the precision of the system and field technique. Results from validation at two different sites showed average sample standard deviations (S.D.s) of 0.12 m for these complete cross-sections, with coefficient of variations of 10%. Validation using only the mid-channel river cross-section data yields an average sample S.D. of 0.05 m, with a coefficient of variation below 5%, at a stable and gauged river site using only measurements of water depths greater than 0.6 m. Accuracy of the sonar system was evaluated by comparison to traditionally surveyed transect data from a regularly gauged site. We observed an average mean squared deviation of 46.0 cm2, considering only that portion of the cross-section inundated by more than 0.6 m of water. Our procedure proved to be a reliable, accurate, safe, quick, and economic method to record river depths, discharges, bed conditions, and substratum composition necessary for stream habitat studies. ?? 1998 John Wiley & Sons, Ltd.

  6. Active micromixer using surface acoustic wave streaming

    SciTech Connect

    Branch; Darren W. , Meyer; Grant D. , Craighead; Harold G.

    2011-05-17

    An active micromixer uses a surface acoustic wave, preferably a Rayleigh wave, propagating on a piezoelectric substrate to induce acoustic streaming in a fluid in a microfluidic channel. The surface acoustic wave can be generated by applying an RF excitation signal to at least one interdigital transducer on the piezoelectric substrate. The active micromixer can rapidly mix quiescent fluids or laminar streams in low Reynolds number flows. The active micromixer has no moving parts (other than the SAW transducer) and is, therefore, more reliable, less damaging to sensitive fluids, and less susceptible to fouling and channel clogging than other types of active and passive micromixers. The active micromixer is adaptable to a wide range of geometries, can be easily fabricated, and can be integrated in a microfluidic system, reducing dead volume. Finally, the active micromixer has on-demand on/off mixing capability and can be operated at low power.

  7. Stream Channelization: Conflict Between Ditchers, Conservationists

    ERIC Educational Resources Information Center

    Gillette, Robert

    1972-01-01

    Summarizes the argument between the advocates of stream straightening for flood control, drainage, and navigation, and those concerned with the maintenance of ecological communities and the aesthetic values of natural" streams. (AL)

  8. Effects of Stream Channel Characteristics on Nitrate Delivery to Streams and In-Stream Denitrification Rates, Raccoon River, Iowa

    NASA Astrophysics Data System (ADS)

    Prestegaard, K. L.; O'Connell, M.

    2004-05-01

    Streams in agricultural areas often exhibit significant channel and sediment modifications; they are often incised and transport more fine sediment than non-agricultural streams. These channel characteristics can influence stream water quality by modifying surface-groundwater interactions. In the Raccoon River basin, channel incision increases the delivery of nitrate from the groundwater to the streams. The sandy in-stream sediments, however, serve as very effective sites for in-stream denitrification. Nitrate delivery and in-stream denitrification was examined in 3 subwatersheds of the Raccoon River. Stream morphology, water quality, and sediment characteristics were measured at 35 sites with varying land uses. Headwater stream nitrate concentration increased with percent row crops and the amount of channel incision. Downstream sites showed a wide variation in nitrate concentration with land use. Stream nitrate concentrations were measured at 6 sites in each of 3 streams with high percentages of row crop land uses during high summer baseflow following the 1993 floods and during average summer baseflow in 1995. Nitrate concentrations were systematically higher for the high baseflow conditions of 1993 than the average year (1995). This change in nitrate concentration is interpreted as the increased effectiveness of nitrate delivery to the stream during periods of high water tables. The effect was most pronounced in incised reaches. All 3 streams show downstream decreases in nitrate concentration. Water samples for all the sites in the watersheds were analyzed for nitrogen isotopic composition. The nitrogen isotopic composition shifts with towards higher d 15N values with decreasing nitrate concentration. This is consistent with denitrification reactions that selectively remove the 14N leaving a higher proportion of 15N in the nitrate. This suggests that most of the downstream decrease in nitrate concentrations is a result of in-stream denitrification. The high rates

  9. Active channel for Fanno Creek, Oregon

    USGS Publications Warehouse

    Sobieszczyk, Steven

    2011-01-01

    Fanno Creek is a tributary to the Tualatin River and flows though parts of the southwest Portland metropolitan area. The stream is heavily influenced by urban runoff and shows characteristic flashy streamflow and poor water quality commonly associated with urban streams. This data set represents the active, wetted channel as derived from light detection and ranging (LiDAR) data and aerial photographic imagery. The wetted channel boundary is equivalent to the extent of water observed during a 2-yr high flow event.

  10. Effects of permafrost on stream channel behavior in Arctic Alaska

    USGS Publications Warehouse

    Scott, Kevin M.

    1978-01-01

    Sites with drainage areas ranging from 88 to 12,200 sq km were monitored on five streams in northern Alaska during the breakup in 1976 to determine (1) the effects of frozen bed and bank material on channel behavior, and (2) the importance of the annual breakup flood in forming the channels of arctic streams. The thawing and concomitant erosion of channels varied with changes in bed-material size, channel pattern, drainage area, and climate. The response of channels to breakup flooding ranged from total permafrost control of channel processes, including both bed scour and lateral erosion, to only brief restriction of channel behavior early in the rise of the flooding. The watershed characteristic that appears to explain much of this variation is size of drainage area. (Woodard-USGS)

  11. CHANNEL EVOLUTION IN MODIFIED ALLUVIAL STREAMS.

    USGS Publications Warehouse

    Simon, Andrew; Hupp, Cliff R.

    1987-01-01

    This study (a) assesses the channel changes and network trends of bed level response after modifications between 1959 and 1972 of alluvial channels in western Tennessee and (b) develops a conceptual model of bank slope development to qualitatively assess bank stability and potential channel widening. A six-step, semiquantitative model of channel evolution in disturbed channels was developed by quantifying bed level trends and recognizing qualitative stages of bank slope development. Development of the bank profile is defined in terms of three dynamic and observable surfaces: (a) vertical face (70 to 90 degrees), (b) upper bank (25 to 50 degrees), and (c) slough line (20 to 25 degrees).

  12. Optimized transmission of JPEG2000 streams over wireless channels.

    PubMed

    Thomos, Nikolaos; Boulgouris, Nikolaos V; Strintzis, Michael G

    2006-01-01

    The transmission of JPEG2000 images over wireless channels is examined using reorganization of the compressed images into error-resilient, product-coded streams. The product-code consists of Turbo-codes and Reed-Solomon codes which are optimized using an iterative process. The generation of the stream to be transmitted is performed directly using compressed JPEG2000 streams. The resulting scheme is tested for the transmission of compressed JPEG2000 images over wireless channels and is shown to outperform other algorithms which were recently proposed for the wireless transmission of images.

  13. Mechanically Activated Ion Channels

    PubMed Central

    Ranade, Sanjeev S.; Syeda, Ruhma; Patapoutian, Ardem

    2015-01-01

    Mechanotransduction, the conversion of physical forces into biochemical signals, is an essential component of numerous physiological processes including not only conscious senses of touch and hearing, but also unconscious senses such as blood pressure regulation. Mechanically activated (MA) ion channels have been proposed as sensors of physical force, but the identity of these channels and an understanding of how mechanical force is transduced has remained elusive. A number of recent studies on previously known ion channels along with the identification of novel MA ion channels have greatly transformed our understanding of touch and hearing in both vertebrates and invertebrates. Here, we present an updated review of eukaryotic ion channel families that have been implicated in mechanotransduction processes and evaluate the qualifications of the candidate genes according to specified criteria. We then discuss the proposed gating models for MA ion channels and highlight recent structural studies of mechanosensitive potassium channels. PMID:26402601

  14. Channel Forming Discharges and Scaling Relationships in Small Streams

    NASA Astrophysics Data System (ADS)

    Brayshaw, D. D.

    2008-12-01

    One of the major challenges in predicting or mitigating the impacts of disturbance on hydrologic systems is to link changes in hydrology to changes in sediment delivery and transport. Because of the complexity of modelling, usually only one system is considered in isolation, with any potential changes in the corresponding system inferred. For instance, a study of a small watershed might consider changes to peak flows or to sediment delivery to the channel, but not alteration in channel pattern caused by those changes. Linking our understanding of expected changes in hydrology and sediment transport is therefore important for improving land use management. In order to improve this understanding, the development of models and concepts linking hydrologic change to geomorphic change, and vice versa, is necessary. Channel and reach parameters (such as width, depth, slope, and channel pattern) reflect the adjustment of the stream channel to inputs of water, wood and sediment from upstream and upslope. Therefore, channel parameters can be used as indicators which synthesize the hydrologic and geomorphic processes occurring in a watershed (Goodwin et al, 1998). Two parameters which are particularly relevant are the bankfull discharge and the effective discharge. Bankfull discharge (Wolman and Leopold, 1957) is defined as the discharge at which the stream channel is full to the top of its banks, but not flooding over the bank. Effective discharge (Wolman and Miller, 1960) is defined as the discharge that, averaged over time, transports the most sediment. Estimating the frequency, magnitude, and duration of bankfull and effective discharge in a single stream reach provides an indication of the stream channel's stability and the frequency with which geomorphically effective events occur in the watershed upstream. Determining the bankfull and effective discharge for multiple streams across a region enables regionalization, consideration of scaling relationships, and evaluation

  15. Groundwater discharge along a channelized Coastal Plain stream

    USGS Publications Warehouse

    LaSage, D.M.; Sexton, J.L.; Mukherjee, A.; Fryar, A.E.; Greb, S.F.

    2008-01-01

    In the Coastal Plain of the southeastern USA, streams have commonly been artificially channelized for flood control and agricultural drainage. However, groundwater discharge along such streams has received relatively little attention. Using a combination of stream- and spring-flow measurements, spring temperature measurements, temperature profiling along the stream-bed, and geologic mapping, we delineated zones of diffuse and focused discharge along Little Bayou Creek, a channelized, first-order perennial stream in western Kentucky. Seasonal variability in groundwater discharge mimics hydraulic-head fluctuations in a nearby monitoring well and spring-discharge fluctuations elsewhere in the region, and is likely to reflect seasonal variability in recharge. Diffuse discharge occurs where the stream is incised into the semi-confined regional gravel aquifer, which is comprised of the Mounds Gravel. Focused discharge occurs upstream where the channel appears to have intersected preferential pathways within the confining unit. Seasonal fluctuations in discharge from individual springs are repressed where piping results in bank collapse. Thereby, focused discharge can contribute to the morphological evolution of the stream channel. ?? 2008 Elsevier B.V. All rights reserved.

  16. Groundwater Discharge along a Channelized Coastal Plain Stream

    SciTech Connect

    LaSage, Danita M; Sexton, Joshua L; Mukherjee, Abhijit; Fryar, Alan E; Greb, Stephen F

    2015-10-01

    In the Coastal Plain of the southeastern USA, streams have commonly been artificially channelized for flood control and agricultural drainage. However, groundwater discharge along such streams has received relatively little attention. Using a combination of stream- and spring-flow measurements, spring temperature measurements, temperature profiling along the stream-bed, and geologic mapping, we delineated zones of diffuse and focused discharge along Little Bayou Creek, a channelized, first-order perennial stream in western Kentucky. Seasonal variability in groundwater discharge mimics hydraulic-head fluctuations in a nearby monitoring well and spring-discharge fluctuations elsewhere in the region, and is likely to reflect seasonal variability in recharge. Diffuse discharge occurs where the stream is incised into the semi-confined regional gravel aquifer, which is comprised of the Mounds Gravel. Focused discharge occurs upstream where the channel appears to have intersected preferential pathways within the confining unit. Seasonal fluctuations in discharge from individual springs are repressed where piping results in bank collapse. Thereby, focused discharge can contribute to the morphological evolution of the stream channel.

  17. Riparian vegetation recovery patterns following stream channelization: a geomorphic perspective

    USGS Publications Warehouse

    Hupp, C.R.

    1992-01-01

    Hundreds of kilometres of West Tennessee streams have been channelized since the turn of the century. After a stream is straightened, dredged, or cleared, basin-wide ecologic, hydrologic, and geomorphic processes bring about an integrated, characteristic recovery sequence. The rapid pace of channel responses to channelization provides an opportunity to document and interpret vegetation recovery patterns relative to otherwise long-term, concomitant evolution of river geomorphology. The linkage of channel bed aggradation, woody vegetation establishment, and bank accretion all lead to recovery of the channel. Pioneer species are hardy and fast growing, and can tolerate moderate amounts of slope instability and sediment deposition; these species include river birch (Betula nigra), black willow (Salix nigra), boxelder (Acer negundo), and silver maple (Acer saccharinum). High stem densities and root-mass development appear to enhance bank stability. Tree-ring analyses suggest that on average 65 yr may be required for recovery after channelization. -from Author

  18. Determination of channel change for selected streams, Maricopa County, Arizona

    USGS Publications Warehouse

    Capesius, Joseph P.; Lehman, Ted W.

    2002-01-01

    In Maricopa County, Arizona, 10 sites on seven streams were studied to determine the lateral and vertical change of the channel. Channel change was studied over time scales ranging from individual floods to decades using cross-section surveys, discharge measurements, changes in the point of zero flow, and repeat photography. All of the channels showed some change in cross-section area or hydraulic radius over the time scales studied, but the direction and mag-nitude of change varied considerably from one flow, or series of flows, to another. The documentation of cross-section geometry for streams in Maricopa County for long-term monitoring was begun in this study.

  19. Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

    NASA Astrophysics Data System (ADS)

    Prestegaard, K. L.; Gilbert, L.; Phemister, K.

    2005-05-01

    In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in

  20. Arid ephemeral stream classification using channel geometry and basin characteristics

    NASA Astrophysics Data System (ADS)

    Sutfin, N. A.; Wohl, E. E.; Shaw, J.

    2011-12-01

    Because understanding of ephemeral stream characteristics is limited and many stream classifications do not adequately describe them, it is necessary to develop a better understanding of these dryland fluvial systems and develop more precise terminology to discuss their physical attributes. In addition to development of a geomorphic classification system, we examine relationships between basin characteristics and channel geometry that will indicate where these ephemeral stream types might occur. Our conceptual model includes five geomorphic ephemeral stream types; 1) braided washes, 2) incised alluvium, 3) bedrock with alluvium, 4) bedrock, and 5) piedmont headwater channels. Preliminary watershed classification and cluster analysis of the U.S. Sonoran Desert was conducted using NHD 10-digit Hydrologic Unit Boundaries, PRISM precipitation data, state geologic survey lithology, and data derived from 30m DEMs. A total of 85 reaches were surveyed on the U.S. Army Yuma Proving Ground in southwestern Arizona representing the five stream types within three watershed categories. Following delineation of small-scale watershed characteristics using 10m DEMs for each reach location, statistical analysis will be performed to examine correlations and significant relationships among stream type, basin and channel characteristics. We hope to identify physical drivers resulting in the development of distinct geomorphic stream types and predict where the relative abundance of those stream types are likely to exist in arid environments of the southwestern U.S. We posit that locations and relative distributions of the five stream types will correlate significantly to local basin characteristics. Initial findings verify that composition of confining material dictates the level of confinement and largely influences occurrence of the five channel types. Additionally, we expect to see significant differences in width/depth ratios, grain size, stream gradient, basin hillslope gradient

  1. Implications of fish-habitat relationships for designing restoration projects within channelized agricultural headwater streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Channelized headwater streams are common throughout agricultural watersheds in the Midwestern United States. Management of these streams focuses on drainage without consideration of the other ecosystem services they are capable of providing. Restoration of channelized agricultural headwater stream...

  2. Public Health Perspectives of Channelized and Unchannelized Headwater Streams in Central Ohio: A Case Study

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Headwater streams constitute the majority of watersheds in the United States and many headwater streams in the midwest have been channelized for agricultural drainage. Public health implications of water chemistry and aquatic macroinvertebrates within channelized and unchannelized headwater streams ...

  3. Influence of Beaver Dams on Channel Complexity, Hydrology, and Temperature Regime in a Mountainous Stream

    NASA Astrophysics Data System (ADS)

    Majerova, M.; Neilson, B. T.; Schmadel, N. M.; Wheaton, J. M.; Snow, C. J.

    2013-12-01

    Beaver dams and beaver activity affect hydrologic processes, sediment transport, channel complexity and water quality of streams. Beaver ponds, which form behind beaver dams, increase in-channel water storage affecting the timing and volume of flow and resulting in the attenuation and flattening of the hydrograph. Channel complexity also increases the potential for transient storage (both surface and subsurface) and influences stream temperature. Impacts of beaver dams and beaver activity on stream responses are difficult to quantify because responses are dynamic and spatially variable. Few studies have focused on the reach scale temporal influences on stream responses and further research is needed particularly in quantifying the influence of beaver dams and their role in shaping the stream habitat. This study explores the changing hydrology and temperature regime of Curtis Creek, a mountainous stream located in Northern Utah, in a 560 m long reach where groundwater exchanges and temperature differences were observed over a three-year period. We have collected continuous stream discharge, stream temperature data and performed tracer experiments. During the first year, we were able to capture the pre-beaver activity. In the second year, we captured the impacts of some beaver activity with only a few dams built in the reach, while the third year included the effects of an entire active beaver colony. By the end of the study period, a single thread channel had been transformed into a channel with side channels and backwaters at multiple locations therefore increasing channel complexity. The cumulative influence of beaver dams on reach scale discharge resulted in a slightly losing reach that developed into a gaining reach. At the smaller sub-reach scale, both losing to gaining and gaining to losing transformations were observed. Temperature differences showed a warming effect of beaver dams at the reach scale. The reach stream temperature difference increased on

  4. Influence of instream habitat and water chemistry on amphibians within channelized agricultural headwater streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The widespread use of stream channelization and subsurface tile drainage for draining agricultural fields has led to the development of numerous channelized agricultural headwater streams within agricultural watersheds of the Midwestern United States, Canada, and Europe. Channelized agricultural he...

  5. Conservation implications of amphibian habitat relationships within channelized agricultural headwater streams in the midwestern United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The widespread use of stream channelization and subsurface tile drainage for removing water from agricultural fields has led to the development of numerous channelized agricultural headwater streams within agricultural watersheds of the Midwestern United States. Channelized agricultural headwater s...

  6. Antarctic ice streams and outflow channels on Mars

    USGS Publications Warehouse

    Lucchitta, B.K.

    2001-01-01

    New sonar images of the Antarctic sea floor reveal mega-scale glacial lineations that are strikingly similar to longitudinal flutes in martian outflow channels. The analogs suggest that ice moved through the martian channels in places and carved the flutes. The ice in martian channels may have moved like Antarctic ice streams on deformable debris saturated with water under high pore pressure. On Mars, water at the base of ice-filled channels may have come from residual water or melt water liberated during past warmer climates or higher heat flows.

  7. Multiple-channel Streaming Delivery for Omnidirectional Vision System

    NASA Astrophysics Data System (ADS)

    Iwai, Yoshio; Nagahara, Hajime; Yachida, Masahiko

    An omnidirectional vision is an imaging system that can capture a surrounding image in whole direction by using a hyperbolic mirror and a conventional CCD camera. This paper proposes a streaming server that can efficiently transfer movies captured by an omnidirectional vision system through the Internet. The proposed system uses multiple channels to deliver multiple movies synchronously. Through this method, the system enables clients to view the different direction of omnidirectional movies and also support the function to change the view are during playback period. Our evaluation experiments show that our proposed streaming server can effectively deliver multiple movies via multiple channels.

  8. A standardized sampling protocol for channel catfish in prairie streams

    USGS Publications Warehouse

    Vokoun, Jason C.; Rabeni, Charles F.

    2001-01-01

    Three alternative gears—an AC electrofishing raft, bankpoles, and a 15-hoop-net set—were used in a standardized manner to sample channel catfish Ictalurus punctatus in three prairie streams of varying size in three seasons. We compared these gears as to time required per sample, size selectivity, mean catch per unit effort (CPUE) among months, mean CPUE within months, effect of fluctuating stream stage, and sensitivity to population size. According to these comparisons, the 15-hoop-net set used during stable water levels in October had the most desirable characteristics. Using our catch data, we estimated the precision of CPUE and size structure by varying sample sizes for the 15-hoop-net set. We recommend that 11–15 repetitions of the 15-hoop-net set be used for most management activities. This standardized basic unit of effort will increase the precision of estimates and allow better comparisons among samples as well as increased confidence in management decisions.

  9. Man-induced channel adjustment in Tennessee streams

    USGS Publications Warehouse

    Robbins, C.H.; Simon, Andrew

    1983-01-01

    Channel modifications in Tennessee, particularly in the western part, have led to large-scale instabilities in the channelized rivers and may have contributed to several bridge failures. These modifications, together with land-use practices, led to downcutting, headward erosion, downstream aggradation, accelerated scour, and bank instabilities. Changes in gradient by channel straightening caused more severe channel response than did dredging or clearing. Large-scale changes continue to occur in all the channelized rivers: the Obion River, its forks, and the South Fork Forked Deer River. However, the non-channelized Hatchie River in west Tennessee not only withstood the natural stresses imposed by the wet years of 1973 to 1975 but continues to exhibit characteristics of stability. Water-surface slope, the primary dependent variable, proved to be a sensitive and descriptive parameter useful in determining channel adjustment. Adjustments to man-induced increases in channel-slope are described by inverse exponential functions of the basic form S=ae(-b(t)); where ' S ' is some function describing channel-slope, ' t ' is the number of years since completion of channel work, and ' a ' and ' b ' are coefficients. Response times for the attainment of ' equilibrium ' channel slopes are a function of the magnitude and extent of the imposed modifications. The adjusted profile gradients attained by the streams following channelization are similar to the predisturbed profile gradients, where no alteration to channel length was made. Where the channels were straightened by constructing cut-offs, thus shortening channel length, then slope adjustments (reduction) proceed past the predisturbed profile gradients, to new profiles with lower gradients. (USGS)

  10. Recent (circa 1998 to 2011) channel-migration rates of selected streams in Indiana

    USGS Publications Warehouse

    Robinson, Bret A.

    2013-01-01

    An investigation was completed to document recent (circa 1998 to 2011) channel-migration rates at 970 meander bends along 38 of the largest streams in Indiana. Data collection was completed by using the Google Earth™ platform and, for each selected site, identifying two images with capture dates separated by multiple years. Within each image, the position of the meander-bend cutbank was measured relative to a fixed local landscape feature visible in both images, and an average channel-migration rate was calculated at the point of maximum cutbank displacement. From these data it was determined that 65 percent of the measured sites have recently been migrating at a rate less than 1 ft/yr, 75 percent of the sites have been migrating at a rate less than 10 ft/yr, and while some sites are migrating in excess of 20 ft/yr, these occurrences are rare. In addition, it is shown that recent channel-migration activity is not evenly distributed across Indiana. For the stream reaches studied, far northern and much of far southern Indiana are drained by streams that recently have been relatively stationary. At the same time, this study shows that most of the largest streams in west-central Indiana and many of the largest streams in east-central Indiana have shown significant channel-migration activity during the recent past. It is anticipated that these results will support several fluvial-erosion-hazard mitigation activities currently being undertaken in Indiana.

  11. Guidelines for Surveying Bankfull Channel Geometry and Developing Regional Hydraulic-Geometry Relations for Streams of New York State

    USGS Publications Warehouse

    Powell, Rocky O.; Miller, Sarah J.; Westergard, Britt E.; Mulvihill, Christiane I.; Baldigo, Barry P.; Gallagher, Anne S.; Starr, Richard R.

    2004-01-01

    Many disturbed streams within New York State are being restored in an effort to provide bank and bed stability and thereby decrease sedimentation and erosion. Efforts to identify and provide accurate indicators for stable-channel characteristics for ungaged streams have been hampered by the lack of regional equations or relations that relate drainage area to bankfull discharge and to channel depth, width, and cross-sectional area (bankfull hydraulic-geometry relations). Regional equations are needed to confirm bankfull hydraulic-geometry, assess stream stability, evaluate restoration needs, and verify restoration design for ungaged streams that lack stage-to-discharge ratings or historic peak-flow records. This report presents guidelines for surveying bankfull channel geometry at USGS stream gages and developing regional hydraulic-geometry relations (equations) for wadeable streams in New York. It summarizes methods to (1) compile and assess existing hydrologic, geometric, photographic, and topographic data, (2) conduct stream-reconnaissance inspections, (3) identify channel-bankfull characteristics, (4) conduct longitudinal and cross-section surveys, (5) measure stream discharge, (6) develop and refine bankfull hydraulic-geometry equations, and (7) analyze and assure data completeness and quality. The techniques primarily address wadeable streams with either active or discontinued surface-water and crest-stage gages. The relations can be applied to ungaged or actively gaged streams that are wadeable, and may be extended to non-wadeable streams (with some limitations) if they have drainage areas comparable to those used to develop the relations.

  12. Carbon Limited Heterotrophic Activity in an Urban Stream

    NASA Astrophysics Data System (ADS)

    Hassett, B.; Bernhardt, E.; Palmer, M.

    2005-05-01

    Urban streams are characterized by flashy hydrographs, heavily incised channels, and scoured bed materials. Because of frequent scour, benthic organic matter in urban streams tends to be extremely low relative to nonurban streams. Recent research has related low organic matter availability to low rates of nitrogen uptake. We hypothesized that urban streams are carbon limited, and tested this hypothesis by adding a pulse of labile carbon (as potassium acetate) to the Stewart April tributary of Paint Branch, which drains a heavily urbanized watershed 73% impervious cover) in the suburbs of Washington, D.C. We predicted that the magnitude of the carbon effect on stream metabolism and N processing would be reduced as a result of litter inputs, and compared the stream response before and after peak litterfall. Adding labile dissolved organic carbon to the stream immediately increased metabolism in the stream channel during both additions, but this increase in heterotrophic activity did not lead to reductions in dissolved inorganic nitrogen concentrations. This indicates that while heterotrophs in this stream are carbon limited, the microbial community was not able to respond quickly enough to the pulse addition to appreciably reduce DIN concentrations in this eutrophic stream.

  13. Similarities in fish-habitat relationships within channelized agricultural headwater streams in Ohio and Indiana

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Channelized agricultural headwater streams are common throughout agricultural watersheds in the Midwestern United States. Understanding the fish-habitat relationships within these streams will provide information that can assist with developing restoration strategies for these degraded streams. We...

  14. Grazed Riparian Management and Stream Channel Response in Southeastern Minnesota (USA) Streams

    NASA Astrophysics Data System (ADS)

    Magner, Joseph A.; Vondracek, Bruce; Brooks, Kenneth N.

    2008-09-01

    The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response.

  15. Grazed riparian management and stream channel response in southeastern Minnesota (USA) streams

    USGS Publications Warehouse

    Magner, J.A.; Vondracek, B.; Brooks, K.N.

    2008-01-01

    The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response. ?? 2008 Springer Science+Business Media, LLC.

  16. Grazed riparian management and stream channel response in southeastern Minnesota (USA) streams.

    PubMed

    Magner, Joseph A; Vondracek, Bruce; Brooks, Kenneth N

    2008-09-01

    The U.S. Department of Agriculture-Natural Resources Conservation Service has recommended domestic cattle grazing exclusion from riparian corridors for decades. This recommendation was based on a belief that domestic cattle grazing would typically destroy stream bank vegetation and in-channel habitat. Continuous grazing (CG) has caused adverse environmental damage, but along cohesive-sediment stream banks of disturbed catchments in southeastern Minnesota, short-duration grazing (SDG), a rotational grazing system, may offer a better riparian management practice than CG. Over 30 physical and biological metrics were gathered at 26 sites to evaluate differences between SDG, CG, and nongrazed sites (NG). Ordinations produced with nonmetric multidimensional scaling (NMS) indicated a gradient with a benthic macroinvertebrate index of biotic integrity (IBI) and riparian site management; low IBI scores associated with CG sites and higher IBI scores associated with NG sites. Nongrazed sites were associated with reduced soil compaction and higher bank stability, as measured by the Pfankuch stability index; whereas CG sites were associated with increased soil compaction and lower bank stability, SDG sites were intermediate. Bedrock geology influenced NMS results: sites with carbonate derived cobble were associated with more stable channels and higher IBI scores. Though current riparian grazing practices in southeastern Minnesota present pollution problems, short duration grazing could reduce sediment pollution if managed in an environmentally sustainable fashion that considers stream channel response.

  17. Instream wood recruitment, channel complexity, and their relationship to stream ecology in forested headwater streams under alternative stable states

    NASA Astrophysics Data System (ADS)

    Livers, B.; Wohl, E.

    2015-12-01

    Human alteration to forests has had lasting effects on stream channels worldwide. Such land use changes affect how wood enters and is stored in streams as individual pieces and as logjams. Changes in wood recruitment affect the complexity and benefits wood can provide to the stream environment, such as zones of flow separation that store fine sediment and organic matter, increased nutrient processing, and greater habitat potential, which can enhance biota and cascade through stream-riparian ecosystems. Previous research in our study area shows that modern headwater streams flowing through old-growth, unmanaged forests have more wood than streams in young, managed forests, but does not explicitly evaluate how wood affects channel complexity or local ecology. 'Managed' refers to forests previously or currently exposed to human alteration. Alteration has long since ceased in some areas, but reduced wood loads in managed streams persist. Our primary objective was to quantify stream complexity metrics, with instream wood as a mediator, on streams across a gradient of management and disturbance histories in order to examine legacy effects of human alteration to forests. Data collected in the Southern Rocky Mountains include 24 2nd to 3rd order subalpine streams categorized into: old-growth unmanaged; younger, naturally disturbed unmanaged; and younger managed. We assessed instream wood loads and logjams and evaluated how they relate to channel complexity using a number of metrics, such as standard deviation of bed and banks, volume of pools, ratios of stream to valley lengths and stream to valley area, and diversity of substrate, gradient, and morphology. Preliminary results show that channel complexity is directly related to instream wood loads and is greatest in streams in old-growth. Related research in the field area indicates that streams with greater wood loads also have increased nutrient processing and greater abundance and diversity of aquatic insect predators.

  18. Differences in instream wood characteristics between channelized and unchannelized agricultural headwater streams in central Ohio

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Instream wood is an important resource for stream biota because it provides cover for fishes, substrate for macroinvertebrates, and increases habitat diversity. However, current management of instream wood within channelized agricultural headwater streams (drainage ditches) involves removing instrea...

  19. Simple measures of channel habitat complexity predict transient hydraulic storage in streams

    EPA Science Inventory

    Stream thalweg depth profiles (along path of greatest channel depth) and woody debris tallies have recently become components of routine field procedures for quantifying physical habitat in national stream monitoring efforts. Mean residual depth, standard deviation of thalweg dep...

  20. Characteristics of instream wood within channelized agricultural headwater streams in the Midwestern United States

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Channelized agricultural headwater streams are a common feature within agricultural watersheds of the Midwestern United States. These small streams have been impacted by the physical and chemical habitat alterations incurred to facilitate agricultural drainage. Quantitative information on the instre...

  1. Importance of instream wood characteristics for developing restoration designs for channelized agricultural headwater streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Channelized agricultural headwater streams are a common feature within agricultural watersheds of the Midwestern United States. These small streams have been impacted by the physical and chemical habitat alterations incurred to facilitate agricultural drainage. Quantitative information on the instr...

  2. Influence of Gully Erosion Control on Amphibian and Reptile Communities within Riparian Zones of Channelized Streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Riparian zones of streams in northwestern Mississippi have been impacted by agriculture, channelization, channel incision, and gully erosion. Riparian gully formation has resulted in the fragmentation of remnant riparian zones within agricultural watersheds. One widely used conservation practice for...

  3. Rain and channel flow supplements to subsurface water beneath hyper-arid ephemeral stream channels

    NASA Astrophysics Data System (ADS)

    Kampf, Stephanie K.; Faulconer, Joshua; Shaw, Jeremy R.; Sutfin, Nicholas A.; Cooper, David J.

    2016-05-01

    In hyper-arid regions, ephemeral stream channels are important sources of subsurface recharge and water supply for riparian vegetation, but few studies have documented the subsurface water content dynamics of these systems. This study examines ephemeral channels in the hyper-arid western Sonoran Desert, USA to determine how frequently water recharges the alluvial fill and identify variables that affect the depth and persistence of recharge. Precipitation, stream stage, and subsurface water content measurements were collected over a three-year study at six channels with varying contributing areas and thicknesses of alluvial fill. All channels contain coarse alluvium composed primarily of sands and gravels, and some locations also have localized layers of fine sediment at 2-3 m depth. Rain alone contributed 300-400 mm of water input to these channels over three years, but water content responses were only detected for 36% of the rain events at 10 cm depth, indicating that much of the rain water was either quickly evaporated or taken up by plants. Pulses of water from rain events were detected only in the top meter of alluvium. The sites each experienced ⩽5 brief flow events, which caused transient saturation that usually lasted only a few hours longer than flow. These events were the only apparent source of water to depths >1 m, and water from flow events quickly percolated past the deepest measurement depths (0.5-3 m). Sustained saturation in the shallow subsurface only developed where there was a near-surface layer of finer consolidated sediments that impeded deep percolation.

  4. Long-term impacts of land cover changes on stream channel loss

    EPA Science Inventory

    Land cover change and stream channel loss are two related global environmental changes that are expanding and intensifying. Here, we examine how different types and transitions of land cover change impact stream channel loss across a large urbanizing watershed with large areas of...

  5. The effect of in-stream activities on the Njoro River, Kenya. Part I: Stream flow and chemical water quality

    NASA Astrophysics Data System (ADS)

    Yillia, Paul T.; Kreuzinger, Norbert; Mathooko, Jude M.

    For shallow streams in sub-Saharan Africa, in-stream activities could be described as the actions by people and livestock, which take place within or besides stream channels. This study examined the nature of in-stream activities along a rural stream in Kenya and established the inequality in water allocation for various livelihood needs, as well as the negative impact they have on dry weather stream flow and chemical water quality. Seven locations along the stream were studied in wet and dry weather of 2006. Enumeration consisted of making head counts of people and livestock and tallying visitors at hourly intervals from 6 a.m. to 7 p.m. To estimate water abstraction, filled containers of known volume were counted and the stream was sampled to examine the impact on water quality. Water samples were obtained upstream and downstream of in-stream activities before (6 a.m.) and during (11 a.m., 6 p.m.) activities. Samples were analyzed for suspended solids, turbidity, BOD 5, total nitrogen and total phosphorus. The daily total abstraction at the middle reaches during dry weather was 120-150 m 3 day -1. More than 60% of abstraction was done by water vendors. Vended water from the stream was sold at US 3.5-7.5 per m 3 and vendors earned between US 3-6 a day. Abstracted water contributed approximately 40-60% of the total daily consumptive water use in the riparian area during dry weather but >30% of the morning stream flow was abstracted thereby upsetting stream flow in the lower reaches. The daily total water abstraction correlated positively ( R2, 0.98) and significantly ( p < 0.05) with the daily total human visit, which was diurnally periodic with two peaks, occurring between 9 a.m. and 10 a.m. and from 4 p.m. to 5 p.m. This diurnal pattern of visits and the corresponding in-stream activities affected water quality. In particular, suspended solids, turbidity and BOD 5 levels increased significantly ( p < 0.05) downstream during in-stream activities. It was concluded

  6. Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake

    NASA Astrophysics Data System (ADS)

    Constantz, J.; Naranjo, R.; Niswonger, R.; Allander, K.; Neilson, B.; Rosenberry, D.; Smith, D.; Rosecrans, C.; Stonestrom, D.

    2016-03-01

    The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth. The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for unique biogeochemical processes and ecosystems. Worldwide shoreline development is changing stream-lake interfaces through channelization of stream mouths, i.e., channel straightening and bank stabilization to prevent natural meandering at the shoreline. In the central Sierra Nevada (USA), Lake Tahoe's shoreline has an abundance of both "unmodified" (i.e., not engineered though potentially impacted by broader watershed engineering) and channelized stream mouths. Two representative stream mouths along the lake's north shore, one channelized and one unmodified, were selected to compare and contrast water and heat exchanges. Hydraulic and thermal properties were monitored during separate campaigns in September 2012 and 2013 and sw/gw exchanges were estimated within the stream mouth-shoreline continuum. Heat-flow and water-flow patterns indicated clear differences in the channelized versus the unmodified stream mouth. For the channelized stream mouth, relatively modulated, cool-temperature, low-velocity longitudinal streambed flows discharged offshore beneath warmer buoyant lakeshore water. In contrast, a seasonal barrier bar formed across the unmodified stream mouth, creating higher-velocity subsurface flow paths and higher diurnal temperature variations relative to shoreline water. As a consequence, channelization altered sw/gw exchanges potentially altering biogeochemical processing and ecological systems in and near the stream mouth.

  7. Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake

    USGS Publications Warehouse

    Constantz, James; Naranjo, Ramon C.; Niswonger, Richard; Allander, Kip K.; Neilson, B.; Rosenberry, Donald O.; Smith, David W.; Rosecrans, C.; Stonestrom, David A.

    2016-01-01

    The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth. The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for unique biogeochemical processes and ecosystems. Worldwide shoreline development is changing stream-lake interfaces through channelization of stream mouths, i.e., channel straightening and bank stabilization to prevent natural meandering at the shoreline. In the central Sierra Nevada (USA), Lake Tahoe's shoreline has an abundance of both “unmodified” (i.e., not engineered though potentially impacted by broader watershed engineering) and channelized stream mouths. Two representative stream mouths along the lake's north shore, one channelized and one unmodified, were selected to compare and contrast water and heat exchanges. Hydraulic and thermal properties were monitored during separate campaigns in September 2012 and 2013 and sw/gw exchanges were estimated within the stream mouth-shoreline continuum. Heat-flow and water-flow patterns indicated clear differences in the channelized versus the unmodified stream mouth. For the channelized stream mouth, relatively modulated, cool-temperature, low-velocity longitudinal streambed flows discharged offshore beneath warmer buoyant lakeshore water. In contrast, a seasonal barrier bar formed across the unmodified stream mouth, creating higher-velocity subsurface flow paths and higher diurnal temperature variations relative to shoreline water. As a consequence, channelization altered sw/gw exchanges potentially altering biogeochemical processing and ecological systems in and near the stream mouth.

  8. Modelling the changing interactions between riparian forests, stream channel dynamics and fish habitat in mountainous watersheds affected by wildfire (Invited)

    NASA Astrophysics Data System (ADS)

    Eaton, B. C.; Davidson, S. L.

    2013-12-01

    Stream networks in the Pacific Northwest are particularly good examples of fluvial systems that are controlled by a range of biophysical interactions. Forests adjacent to such streams reinforce the channel banks, thereby affecting the channel shape, bed material transport capacity and degree of lateral activity. They also supply wood to the stream, which interacts with the channel by storing and releasing sediment, and by altering the frequency and character of pools, bars and riffles. Where wood is small enough to be transported by the stream but large enough to span the channel at some locations, jams can form that alter the channel pattern by triggering avulsions around the jams. These biophysical interactions strongly influence the quantity and quality of the physical habitat available for certain species of fish, particularly salmonids. Furthermore, they are strongly scale dependent, and the interactions (and thus habitat) characteristic of smaller channels are quite different from those typical in larger ones. These channels are also influenced (to varying degrees, depending on their scale) by disturbances to the riparian forest such as wildfire. We have developed a stochastic model to investigate how wood, sediment transport and habitat character interact across a range of channel scales (Fig. 1). The model is based on physical representations of the wood input and movement processes, and empirical relations from a set of flume experiments relating wood size and orientation to sediment accumulation, and we use it to run Monte Carlo simulations that describe the distribution of possible channel states for channels of different scale. We also use the model to investigate the response to and recovery from (in terms of physical habitat) disturbance by wildfire.

  9. Long-term impacts of land cover changes on stream channel loss.

    PubMed

    Julian, Jason P; Wilgruber, Nicholas A; de Beurs, Kirsten M; Mayer, Paul M; Jawarneh, Rana N

    2015-12-15

    Land cover change and stream channel loss are two related global environmental changes that are expanding and intensifying. Here, we examine how different types and transitions of land cover change impact stream channel loss across a large urbanizing watershed. We present historical land cover in the 666-km(2) Lake Thunderbird watershed in central Oklahoma (USA) over a 137 year period and coinciding stream channel length changes for the most recent 70 years of this period. Combining these two datasets allowed us to assess the interaction of land cover changes with stream channel loss. Over this period, the upper third of the watershed shifted from predominantly native grassland to an agricultural landscape, followed by widespread urbanization. The lower two-thirds of the watershed changed from a forested landscape to a mosaic of agriculture, urban, forest, and open water. Most channel length lost in the watershed over time was replaced by agriculture. Urban development gradually increased channel loss and disconnection from 1942 to 2011, particularly in the headwaters. Intensities of channel loss for both agriculture and urban increased over time. The two longest connected segments of channel loss came from the creation of two large impoundments, resulting in 46 km and 25 km of lost stream channel, respectively. Overall, the results from this study demonstrate that multiple and various land-use changes over long time periods can lead to rapid losses of large channel lengths as well as gradual (but increasing) losses of small channel lengths across all stream sizes. When these stream channel losses are taken into account, the environmental impacts of anthropogenic land-use change are compounded. PMID:26282774

  10. West-Antarctic Ice Streams: Analog to Ice Flow in Channels on Mars

    NASA Technical Reports Server (NTRS)

    Lucchitta, B. K.

    1997-01-01

    Sounding of the sea floor in front of the Ross Ice Shelf in Antarctica recently revealed large persistent patterns of longitudinal megaflutes and drumlinoid forms, which are interpreted to have formed at the base of ice streams during the list glacial advance. The flutes bear remarkable resemblance to longitudinal grooves and highly elongated streamlined islands found on the floors of some large martian channels, called outflow channels. ln addition, other similarities exist between Antarctic ice streams and outflow channels. Ice streams are 30 to 80 km wide and hundreds of kilometers long, as are the martian channels. Ice stream beds are below sea level. Floors of many martian outflow channels lie below martian datum, which may have been close to or below past martian sea levels. The Antarctic ice stream bed gradient is flat and locally may go uphill, and surface slopes are exceptionally low. So are gradients of martian channels. The depth to the bed in ice streams is 1 to 1.5 km. At bankful stage, the depth of the fluid in outflow channels would have been 1 to 2 km. These similarities suggest that the martian outflow channels, whose origin is commonly attributed to gigantic catastrophic floods, were locally filled by ice that left a conspicuous morphologic imprint. Unlike the West-Antarctic-ice streams, which discharge ice from an ice sheet, ice in the martian channels came from water erupting from the ground. In the cold martian environment, this water, if of moderate volume, would eventually freeze. Thus it may have formed icings on springs, ice dams and jams on constrictions in the channel path, or frozen pools. Given sufficient thickness and downhill surface gradient, these ice masses would have moved; and given the right conditions, they could have moved like Antarctic ice streams.

  11. Instream Wood Loads and Channel Complexity in Headwater Streams Under Alternative Stable States

    NASA Astrophysics Data System (ADS)

    Livers, B.; Wohl, E.

    2014-12-01

    Channel morphology and irregularities in stream boundaries can create zones of flow separation, where lower velocities trap fine sediment and organic matter and increase opportunities for nutrient processing and biological uptake. This effect is most pronounced with channel-spanning structures such as logjams. Humans have changed the spatial and temporal characteristics of wood distribution in streams, with lasting effects on instream wood recruitment, wood loads, logjam distribution, and hydraulic roughness. Previous studies in the Colorado Front Range show that contemporary headwater streams flowing through old-growth, unmanaged forests have more wood than streams flowing through younger-growth, managed forests, but do not evaluate the effects of wood on channel complexity. 'Managed' versus 'unmanaged' refers to whether forests were or are currently exposed to human alteration. Although some alteration has long since ceased, reduced wood loads in managed streams persist. Our primary objective was to quantify differences in logjams, wood volumes, stream complexity, and organic carbon storage on streams with different management and disturbance histories in order to examine legacy effects across a gradient of stream management. Data were collected during the summers of 2013 and 2014 in the Southern Rocky Mountains. The 25 stream reaches studied are 2nd to 3rd order, subalpine streams that are categorized into: old-growth unmanaged forests; younger, naturally disturbed unmanaged forests; and younger managed forests. We assessed instream and floodplain wood loads and logjams and evaluated the role that large wood plays in local channel complexity, pool volume, and storage of organic carbon. Preliminary results show that greatest wood and carbon storage in sediments, as well as channel complexity, occurs in streams in old-growth, unmanaged forests and the least wood and carbon storage and channel complexity occurs in younger-growth, managed forests.

  12. Channel stability downstream from a dam assessed using aerial photographs and stream-gage information

    USGS Publications Warehouse

    Juracek, K.E.

    2000-01-01

    The stability of the Neosho River channel downstream from John Redmond Dam, in southeast Kansas, was investigated using multiple-date aerial photographs and stream-gage information. Bankfull channel width was used as the primary indicator variable to assess pre- and post-dam channel change. Five six-mile river reaches and four stream gages were used in the analysis. Results indicated that, aside from some localized channel widening, the overall channel change has been minor with little post-dam change in bankfull channel width. The lack of a pronounced postdam channel change may be attributed to a substantial reduction in the magnitude of the post-dam annual peak discharges in combination with the resistance to erosion of the bed and bank materials. Also, the channel may have been overwidened by a series of large floods that predated construction of the dam, including one with an estimated 500-year recurrence interval.

  13. Distinctive channel geometry and riparian vegetation: A geomorphic classification for arid ephemeral streams

    NASA Astrophysics Data System (ADS)

    Sutfin, N.; Shaw, J. R.; Wohl, E. E.; Cooper, D.

    2012-12-01

    Interactions between hydrology, channel form, and riparian vegetation along arid ephemeral streams are not thoroughly understood and current stream classifications do not adequately represent variability in channel geometry and associated riparian communities. Relatively infrequent hydrologic disturbances in dryland environments are responsible for creation and maintenance of channel form that supports riparian communities. To investigate the influence of channel characteristics on riparian vegetation in the arid southwestern United States, we develop a geomorphic classification for arid ephemeral streams based on the degree of confinement and the composition of confining material that provide constraints on available moisture. Our conceptual model includes five stream types: 1) bedrock channels entirely confined by exposed bedrock and devoid of persistent alluvium; 2) bedrock with alluvium channels at least partially confined by bedrock but containing enough alluvium to create bedforms that persist through time; 3) incised alluvium channels bound only by unconsolidated alluvial material into which they are incised; 4) braided washes that exhibit multi-thread, braided characteristics regardless of the composition of confining material; and 5) piedmont headwater 0-2nd order streams (Strahler) confined only by unconsolidated alluvium and which initiate as secondary channels on piedmont surfaces. Eighty-six study reaches representing the five stream types were surveyed on the U.S. Army Yuma Proving Ground in the Sonoran Desert of southwestern Arizona. Non-parametric multivariate analysis of variance (PERMANOVA) indicates significant differences between the five stream types with regards to channel geometry (i.e., stream gradient, width-to-depth ratio, the ratio between valley width and channel width (Wv/Wc), shear stress, and unit stream power) and riparian vegetation (i.e., presence and canopy coverage by species, canopy stratum, and life form). Discriminant analysis

  14. Computer-aided mapping of stream channels beneath the Lawrence Livermore National Laboratory Super Fund Site

    SciTech Connect

    Sick, M.

    1994-12-01

    The Lawrence Livermore National Laboratory (LLNL) site rests upon 300-400 feet of highly heterogeneous braided stream sediments which have been contaminated by a plume of Volatile Organic Compounds (VOCs). The stream channels are filled with highly permeable coarse grained materials that provide quick avenues for contaminant transport. The plume of VOCs has migrated off site in the TFA area, making it the area of greatest concern. I mapped the paleo-stream channels in the TFA area using SLICE an LLNL Auto-CADD routine. SLICE constructed 2D cross sections and sub-horizontal views of chemical, geophysical, and lithologic data sets. I interpreted these 2D views as a braided stream environment, delineating the edges of stream channels. The interpretations were extracted from Auto-CADD and placed into Earth Vision`s 3D modeling and viewing routines. Several 3D correlations have been generated, but no model has yet been chosen as a best fit.

  15. The importance of instream habitat modifications for restoring channelized agricultural headwater streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Science based information on the influence of restoration practices on fishes within channelized agricultural headwater streams in the Midwestern United States is currently lacking. Understanding fish-habitat relationships and fish responses to specific restoration practices will provide informatio...

  16. HOW WELL CAN YOU ESTIMATE LOW FLOW AND BANKFULL DISCHARGE FROM STREAM CHANNEL HABITAT DATA?

    EPA Science Inventory

    Modeled estimates of stream discharge are becoming more important because of reductions in the number of gauging stations and increases in flow alteration from land development and climate change. Field measurements of channel morphology are available at thousands of streams and...

  17. Rock riprap design for protection of stream channels near highway structures; Volume 1, Hydraulic characteristics of open channels

    USGS Publications Warehouse

    Blodgett, J.C.

    1986-01-01

    Volume I discusses the hydraulic and channel properties of streams, based on data from several hundred sites. Streamflow and geomorphic data have been collected and developed to indicate the range in hydraulic factors typical of open channels , to assist design, maintenance, and construction engineers in preparing rock riprap bank protection. Typical channels were found to have maximum-to-mean depth ratio of 1.55 and a ratio of hydraulic radius to mean depth of 0.98, which is independent of width. Most stable channel characteristics for a given discharge are slope, maximum depth, and hydraulic radius. (See also W89-04911) (Author 's abstract)

  18. The Blurred Line between Form and Process: A Comparison of Stream Channel Classification Frameworks

    PubMed Central

    Kasprak, Alan; Hough-Snee, Nate

    2016-01-01

    Stream classification provides a means to understand the diversity and distribution of channels and floodplains that occur across a landscape while identifying links between geomorphic form and process. Accordingly, stream classification is frequently employed as a watershed planning, management, and restoration tool. At the same time, there has been intense debate and criticism of particular frameworks, on the grounds that these frameworks classify stream reaches based largely on their physical form, rather than direct measurements of their component hydrogeomorphic processes. Despite this debate surrounding stream classifications, and their ongoing use in watershed management, direct comparisons of channel classification frameworks are rare. Here we implement four stream classification frameworks and explore the degree to which each make inferences about hydrogeomorphic process from channel form within the Middle Fork John Day Basin, a watershed of high conservation interest within the Columbia River Basin, U.S.A. We compare the results of the River Styles Framework, Natural Channel Classification, Rosgen Classification System, and a channel form-based statistical classification at 33 field-monitored sites. We found that the four frameworks consistently classified reach types into similar groups based on each reach or segment’s dominant hydrogeomorphic elements. Where classified channel types diverged, differences could be attributed to the (a) spatial scale of input data used, (b) the requisite metrics and their order in completing a framework’s decision tree and/or, (c) whether the framework attempts to classify current or historic channel form. Divergence in framework agreement was also observed at reaches where channel planform was decoupled from valley setting. Overall, the relative agreement between frameworks indicates that criticism of individual classifications for their use of form in grouping stream channels may be overstated. These form

  19. The Blurred Line between Form and Process: A Comparison of Stream Channel Classification Frameworks.

    PubMed

    Kasprak, Alan; Hough-Snee, Nate; Beechie, Tim; Bouwes, Nicolaas; Brierley, Gary; Camp, Reid; Fryirs, Kirstie; Imaki, Hiroo; Jensen, Martha; O'Brien, Gary; Rosgen, David; Wheaton, Joseph

    2016-01-01

    Stream classification provides a means to understand the diversity and distribution of channels and floodplains that occur across a landscape while identifying links between geomorphic form and process. Accordingly, stream classification is frequently employed as a watershed planning, management, and restoration tool. At the same time, there has been intense debate and criticism of particular frameworks, on the grounds that these frameworks classify stream reaches based largely on their physical form, rather than direct measurements of their component hydrogeomorphic processes. Despite this debate surrounding stream classifications, and their ongoing use in watershed management, direct comparisons of channel classification frameworks are rare. Here we implement four stream classification frameworks and explore the degree to which each make inferences about hydrogeomorphic process from channel form within the Middle Fork John Day Basin, a watershed of high conservation interest within the Columbia River Basin, U.S.A. We compare the results of the River Styles Framework, Natural Channel Classification, Rosgen Classification System, and a channel form-based statistical classification at 33 field-monitored sites. We found that the four frameworks consistently classified reach types into similar groups based on each reach or segment's dominant hydrogeomorphic elements. Where classified channel types diverged, differences could be attributed to the (a) spatial scale of input data used, (b) the requisite metrics and their order in completing a framework's decision tree and/or, (c) whether the framework attempts to classify current or historic channel form. Divergence in framework agreement was also observed at reaches where channel planform was decoupled from valley setting. Overall, the relative agreement between frameworks indicates that criticism of individual classifications for their use of form in grouping stream channels may be overstated. These form

  20. The Blurred Line between Form and Process: A Comparison of Stream Channel Classification Frameworks.

    PubMed

    Kasprak, Alan; Hough-Snee, Nate; Beechie, Tim; Bouwes, Nicolaas; Brierley, Gary; Camp, Reid; Fryirs, Kirstie; Imaki, Hiroo; Jensen, Martha; O'Brien, Gary; Rosgen, David; Wheaton, Joseph

    2016-01-01

    Stream classification provides a means to understand the diversity and distribution of channels and floodplains that occur across a landscape while identifying links between geomorphic form and process. Accordingly, stream classification is frequently employed as a watershed planning, management, and restoration tool. At the same time, there has been intense debate and criticism of particular frameworks, on the grounds that these frameworks classify stream reaches based largely on their physical form, rather than direct measurements of their component hydrogeomorphic processes. Despite this debate surrounding stream classifications, and their ongoing use in watershed management, direct comparisons of channel classification frameworks are rare. Here we implement four stream classification frameworks and explore the degree to which each make inferences about hydrogeomorphic process from channel form within the Middle Fork John Day Basin, a watershed of high conservation interest within the Columbia River Basin, U.S.A. We compare the results of the River Styles Framework, Natural Channel Classification, Rosgen Classification System, and a channel form-based statistical classification at 33 field-monitored sites. We found that the four frameworks consistently classified reach types into similar groups based on each reach or segment's dominant hydrogeomorphic elements. Where classified channel types diverged, differences could be attributed to the (a) spatial scale of input data used, (b) the requisite metrics and their order in completing a framework's decision tree and/or, (c) whether the framework attempts to classify current or historic channel form. Divergence in framework agreement was also observed at reaches where channel planform was decoupled from valley setting. Overall, the relative agreement between frameworks indicates that criticism of individual classifications for their use of form in grouping stream channels may be overstated. These form

  1. Influences of Hardwood Riparian Vegetation on Stream Channel Geometry in Eastern Forested Environments

    NASA Astrophysics Data System (ADS)

    Cohen, L. J.; Furbish, D. J.

    2015-12-01

    Riparian vegetation has been recognized as a controlling factor of stream channel morphology, but specific influences on bed topography and planform geometry are yet to be fully clarified. In temperate environments, hardwood trees serve as prominent bank stabilizers and help create diverse habitats for a variety of aquatic organisms in alluvial channels. This project explores the influence of riparian vegetation on channel geometry in alluvial streams of different sizes. Exposed rootwads increase bank stability and slow channel migration rates, but also cause pool scour that affects thalweg and bedform locations downstream, implying that woody riparian vegetation influences flow conditions and two-dimensional bed geometry in alluvial streams. Field data suggest that the presence of hardwood vegetation modulates channel width, bed topography and planform geometry in low-order streams. In larger channels, rootwads have less influence on planform curvature, but create patchy variations in bed topography that establish thalweg locations and amplify relief of curvature-dominated bedforms. Flume experiments illustrate the genesis of rootwad-induced pool scour and its effect on downstream pool and bar formation. Experimental rootwad pools reflect the relative size and shape of those observed in natural channels. Introduction of riparian obstructions to planar beds also influences thalweg location several channel widths downstream, further supporting the idea of riparian influence on bedform modulation and regulation.

  2. Influence of gully erosion control on amphibian and reptile communities within riparian zones of channelized streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Riparian zones of streams in northern Mississippi have been impacted by agriculture, channelization, channel incision, and gully erosion. Gully erosion is the most severe form of erosion and has resulted in the fragmentation of remnant riparian zones within agricultural watersheds. One widely used c...

  3. Regional impacts of urbanization on stream channel geometry: A case study in semiarid southern California

    NASA Astrophysics Data System (ADS)

    Taniguchi, Kristine T.; Biggs, Trent W.

    2015-11-01

    Urbanization often increases storm runoff, peak discharges and rates of stream channel erosion. Coastal California has experienced rapid urbanization over the past several decades and has the potential for stream channel degradation. Several counties in California have implemented Hydromodification Management Plans (HMPs) to protect channels from erosion, but few studies have quantified the impact of urbanization on channel geometry in diverse geological settings at the county scale. A synoptic survey of field sites (N = 56) by the California Environmental Data Exchange Network (CEDEN) and additional field surveys (N = 24) were used to develop regional hydraulic geometry curves relating bankfull cross-sectional area (Axs), width (w), mean depth (d), and discharge (Qbf) to watershed area (Aw) in San Diego County. Regional curves were compared for urban and reference sites and to other regional curves developed for southern California. Multiple regression models were used to identify dominant watershed and channel controls on geometry, including Aw, percent impervious cover (I%), mean annual precipitation, underlying geology, longitudinal slope, hydrologic soil group, and channel particle size. For the reference streams, regional curves were statistically significant for w and Axs (p < 0.05). The regional curves for urban channels (I% > 20%) had significantly larger w, d, Axs, and Qbf for a given watershed size. A majority (68%) of the urban channels and 78% of the small urban channels (Aw < 10 km2) were enlarged. Enlargement of channels in small watersheds disrupted the correlation between Aw and bankfull dimensions, and I% was the only significant predictor of channel geometry in urban watersheds. Channel response differed by channel substrate: sand-bedded channels incised and experienced extreme enlargement of up to 115 × the Axs of reference sites, while gravel-bedded channels widened and showed less enlargement (< 7 × reference Axs). Diverse channel responses

  4. In situ production of methylmercury within a stream channel in northern California.

    PubMed

    Tsui, Martin Tsz Ki; Finlay, Jacques C; Balogh, Steven J; Nollet, Yabing H

    2010-09-15

    Natural stream ecosystems throughout the world are contaminated by methylmercury, a highly toxic compound that bioaccumulates and biomagnifies in aquatic food webs. Wetlands are widely recognized as hotspots for the production of methylmercury and are often assumed to be the main sources of this neurotoxin in downstream ecosystems. However, many streams lacking wetlands in their drainage basins (e.g., montane and semiarid regions in the western United States) have significant methylmercury contamination, and the sources of methylmercury in these streams remain largely unknown. In this study, we observed substantial production of methylmercury within a highly productive stream channel in northern California (South Fork Eel River) within a drainage basin lacking wetlands. We found that in situ methylmercury production is positively related to phosphorus removal and water temperature within the stream channel, supporting hypothesized biological mediation of in situ mercury transformation. Moreover, our data suggest that epiphytic microbial communities on a dominant filamentous alga (Cladophora glomerata) could play a role in in situ methylmercury production. Because peak in situ methylmercury production coincides with the period of the highest biological productivity during summer baseflow, methylmercury produced internally may be efficiently routed into local stream food webs. Our study provides strong evidence that stream channels, especially those associated with high primary productivity, can be important for regulating the bioavailability and toxicity of this global contaminant. PMID:20715863

  5. In situ production of methylmercury within a stream channel in northern California.

    PubMed

    Tsui, Martin Tsz Ki; Finlay, Jacques C; Balogh, Steven J; Nollet, Yabing H

    2010-09-15

    Natural stream ecosystems throughout the world are contaminated by methylmercury, a highly toxic compound that bioaccumulates and biomagnifies in aquatic food webs. Wetlands are widely recognized as hotspots for the production of methylmercury and are often assumed to be the main sources of this neurotoxin in downstream ecosystems. However, many streams lacking wetlands in their drainage basins (e.g., montane and semiarid regions in the western United States) have significant methylmercury contamination, and the sources of methylmercury in these streams remain largely unknown. In this study, we observed substantial production of methylmercury within a highly productive stream channel in northern California (South Fork Eel River) within a drainage basin lacking wetlands. We found that in situ methylmercury production is positively related to phosphorus removal and water temperature within the stream channel, supporting hypothesized biological mediation of in situ mercury transformation. Moreover, our data suggest that epiphytic microbial communities on a dominant filamentous alga (Cladophora glomerata) could play a role in in situ methylmercury production. Because peak in situ methylmercury production coincides with the period of the highest biological productivity during summer baseflow, methylmercury produced internally may be efficiently routed into local stream food webs. Our study provides strong evidence that stream channels, especially those associated with high primary productivity, can be important for regulating the bioavailability and toxicity of this global contaminant.

  6. Do the coarsest bed fractions and stream power record contemporary trends in steep headwater channels?

    NASA Astrophysics Data System (ADS)

    Galia, Tomáš; Škarpich, Václav

    2016-11-01

    Three stream channels that were devoid of evidence of past debris flows and one headwater channel that contained debris flow deposits in the flysch western Carpathians, Czech Republic were selected to test relationships between in-channel processes, bed sediments, and unit stream power calculated for bankfull and Q20 flows. Contemporary depositional or erosional trends in the examined headwaters were linked with bed sediments that were represented by the coarsest cobble and boulder fraction with a mean calculated from the five largest particles. The downstream trends of the unit stream power were derived for a bankfull discharge and a well-documented 20-year flood event. In addition, the flow competences during the discharges were calculated using indirect bedload transport measurements. Downstream fining of the cobble and boulder fraction was observed in all of the studied headwaters, and unique downstream variations of the unit stream power were calculated for the longitudinal profiles. The single-thread streams that were devoid of evidence of debris flow events exhibited direct relations between the coarsest sediment size and the unit stream power, especially as calculated for the 20-year flood event and for erosional/depositional trends of the channel. The downstream coarsening of the bed material that was accompanied by an increase in the unit stream power was usually observed in the case of deeply incised (> 0.5 m above the assumed bankfull depth) channel reaches. The calculated competence of the 20-year flow was up to twofold higher than that required to entrain the largest bed particle diameters in those channel reaches, and even the bankfull flow was potentially capable of transporting the coarsest bed particles in certain of the reaches. On the other hand, some depositional channel reaches evidently led to the disconnectivity of transport of the coarsest bed material even in the case of the 20-year flood event. The longitudinal profile of the channel that

  7. AN INTERREGIONAL COMPARISON OF CHANNEL STRUCTURE, TRANSIENT STORAGE AND NUTRIENT UPTAKE IN STREAMS DRAINING MANAGED AND OLD GROWTH WATERSHEDS

    EPA Science Inventory

    We compared stream channel structure (width, depth, substrate composition) and riparian canopy with transient storage and nutrient uptake in 32 streams draining old-growth and managed watersheds in the Appalachian Mountains (North Carolina), Ouachita Mountains (Arkansas), Cascade...

  8. Predicting stream channel erosion in the lacustrine core of the upper Nemadji River, Minnesota (USA) using stream geomorphology metrics

    NASA Astrophysics Data System (ADS)

    Magner, Joseph A.; Brooks, Kenneth N.

    2008-06-01

    The USA Clean Water Act requires the development of a total maximum daily load (TMDL) when Minnesota’s water quality standard for turbidity is exceeded; however, regions underlain with fine-grained lacustrine deposits yield large natural background loads of suspended inorganic sediment. A review of hydrogeologic pathways was conducted along with the statistical analysis of geomorphic metrics, collected at 15 sites with varying drainage areas in the upper Nemadji River basin, northeastern Minnesota. Regression analysis indicated a strong linkage between bankfull cross-sectional area and drainage area. Dimensionless geomorphic metric ratios were developed to predict channel evolution potential and associated channel erosion risk. Sites located in drainage areas less than 2 km2 had low erosion risk and showed a correlation between channel slope and relative roughness ( D 84/mean bankfull channel depth, 88%). A principal components analysis explained over 98% of the variance between sites and indicated five important channel shape metrics to predict channel erosion: bankfull width, bankfull depth, maximum depth, cross-sectional area, and valley beltwidth. Mass wasting of cohesive stream channel sediment was influenced by groundwater discharge and produced turbid waters in the upper Nemadji River.

  9. Imaging and spectroscopic observations of a filament channel and the implications for the nature of counter-streamings

    SciTech Connect

    Chen, P. F.; Fang, C.; Harra, L. K.

    2014-03-20

    The dynamics of a filament channel are observed with imaging and spectroscopic telescopes before and during the filament eruption on 2011 January 29. The extreme ultraviolet (EUV) spectral observations reveal that there are no EUV counterparts of the Hα counter-streamings in the filament channel, implying that the ubiquitous Hα counter-streamings found by previous research are mainly due to longitudinal oscillations of filament threads, which are not in phase between each other. However, there exist larger-scale patchy counter-streamings in EUV along the filament channel from one polarity to the other, implying that there is another component of unidirectional flow (in the range of ±10 km s{sup –1}) inside each filament thread in addition to the implied longitudinal oscillation. Our results suggest that the flow direction of the larger-scale patchy counter-streaming plasma in the EUV is related to the intensity of the plage or active network, with the upflows being located at brighter areas of the plage and downflows at the weaker areas. We propose a new method to determine the chirality of an erupting filament on the basis of the skewness of the conjugate filament drainage sites. This method suggests that the right-skewed drainage corresponds to sinistral chirality, whereas the left-skewed drainage corresponds to dextral chirality.

  10. Sources and interpretation of channel complexity in forested subalpine streams of the Southern Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Livers, Bridget; Wohl, Ellen

    2016-05-01

    We evaluate correlations between stream geomorphic complexity and characteristics of the adjacent riparian forest, valley geometry, and land use history in forested subalpine streams of the Colorado Front Range. Measures of geomorphic complexity focus on cross-sectional, planform, and instream wood piece and logjam variables. We categorize adjacent riparian forests as old-growth unmanaged forest (OU), younger unmanaged forest (YU), and younger managed forest (YM), and valley geometry as laterally confined, partly confined, or unconfined. Significant differences in geomorphic stream complexity between OU, YU, and YM result primarily from differences in wood pieces and logjams, and these differences correlate strongly with pool volume and organic matter storage. Significant differences in planform and cross-sectional complexity correlate more strongly with valley geometry, but do not explain as much of the observed variability in complexity between streams as do the wood variables. Unconfined OU streams have the largest wood loads and the greatest complexity, whereas legacy effects of logging, tie-drives, and channel simplification create lower complexity in YM streams, even relative to YU streams flowing through similarly aged forest. We find that management history of riparian forests exerts the strongest control on reduced functional stream channel complexity, regardless of riparian forest stand age.

  11. Geomorphic and vegetative recovery processes along modified stream channels of West Tennessee

    USGS Publications Warehouse

    Simon, Andrew; Hupp, C.R. Tennessee

    1992-01-01

    Hundreds of miles of streams in West Tennessee have been channelized or otherwise modt@ed since the turn of century. After all or parts of a stream are straightened, dredged, or cleared, systematic hydrologic, geomorphic, and ecologic processes collectively begin to reduce energy conditions towards the premodified state. One hundred and five sites along 15 streams were studied in the Obion, Forked Deer, Hatchie, and Wolf River basins. All studied streams, except the Hatchie River, have had major channel modi@cation along all or parts of their courses. Bank material shear-strength properties were determined through drained borehole-shear testing (168 tests) and used to interpret present critical bank conditions and factors of safety, and to estimate future channel-bank stability. Mean values of cohesive strength and angle of internal friction were 1.26 pounds per square inch and 30.1 degrees, respectively. Dendrogeomorphic analyses were made using botanical evidence of channel-bank failures to determine rates of channel widening; buried riparian stems were analyzed to determine rates of bank accretion. Channel bed-level changes through time and space were represented by a power equation. Plant ecological analyses were ma& to infer relative bank stability, to identify indicator species of the stage of bank recovery, and to determine patterns of vegetation development through the course of channel evolution. Quantitative data on morphologic changes were used with previously developed six-stage models of channel evolution and bank-slope development to estimate trends of geomorphic and ecologic processes and forms through time. Immediately after channel modr@cations, a 10- to 1%yearperiod of channel-bed degradation ensues at and upstream from the most recent modifications (area of maximum disturbance). Channel-bed lowering by &gradation was as much as 20 feet along some stream reaches. Downstream from the area of maximum disturbance, the bed was aggraded by the

  12. Stream sediment sources in midwest agricultural basins with land retirement along channel

    USGS Publications Warehouse

    Williamson, Tanja N.; Christensen, Victoria G.; Richardson, William B.; Frey, Jeffrey W.; Gellis, Allen C.; Kieta, K. A.; Fitzpatrick, Faith A.

    2014-01-01

    Documenting the effects of agricultural land retirement on stream-sediment sources is critical to identifying management practices that improve water quality and aquatic habitat. Particularly difficult to quantify are the effects from conservation easements that commonly are discontinuous along channelized streams and ditches throughout the agricultural midwestern United States. Our hypotheses were that sediment from cropland, retired land, stream banks, and roads would be discernible using isotopic and elemental concentrations and that source contributions would vary with land retirement distribution along tributaries of West Fork Beaver Creek in Minnesota. Channel-bed and suspended sediment were sampled at nine locations and compared with local source samples by using linear discriminant analysis and a four-source mixing model that evaluated seven tracers: In, P, total C, Be, Tl, Th, and Ti. The proportion of sediment sources differed significantly between suspended and channel-bed sediment. Retired land contributed to channel-bed sediment but was not discernible as a source of suspended sediment, suggesting that retired-land material was not mobilized during high-flow conditions. Stream banks were a large contributor to suspended sediment; however, the percentage of stream-bank sediment in the channel bed was lower in basins with more continuous retired land along the riparian corridor. Cropland sediments had the highest P concentrations; basins with the highest cropland-sediment contributions also had the highest P concentrations. Along stream reaches with retired land, there was a lower proportion of cropland material in suspended sediment relative to sites that had almost no land retirement, indicating less movement of nutrients and sediment from cropland to the channel as a result of land retirement.

  13. Stream Sediment Sources in Midwest Agricultural Basins with Land Retirement along Channel.

    PubMed

    Williamson, T N; Christensen, V G; Richardson, W B; Frey, J W; Gellis, A C; Kieta, K A; Fitzpatrick, F A

    2014-09-01

    Documenting the effects of agricultural land retirement on stream-sediment sources is critical to identifying management practices that improve water quality and aquatic habitat. Particularly difficult to quantify are the effects from conservation easements that commonly are discontinuous along channelized streams and ditches throughout the agricultural midwestern United States. Our hypotheses were that sediment from cropland, retired land, stream banks, and roads would be discernible using isotopic and elemental concentrations and that source contributions would vary with land retirement distribution along tributaries of West Fork Beaver Creek in Minnesota. Channel-bed and suspended sediment were sampled at nine locations and compared with local source samples by using linear discriminant analysis and a four-source mixing model that evaluated seven tracers: In, P, total C, Be, Tl, Th, and Ti. The proportion of sediment sources differed significantly between suspended and channel-bed sediment. Retired land contributed to channel-bed sediment but was not discernible as a source of suspended sediment, suggesting that retired-land material was not mobilized during high-flow conditions. Stream banks were a large contributor to suspended sediment; however, the percentage of stream-bank sediment in the channel bed was lower in basins with more continuous retired land along the riparian corridor. Cropland sediments had the highest P concentrations; basins with the highest cropland-sediment contributions also had the highest P concentrations. Along stream reaches with retired land, there was a lower proportion of cropland material in suspended sediment relative to sites that had almost no land retirement, indicating less movement of nutrients and sediment from cropland to the channel as a result of land retirement. PMID:25603248

  14. Relationships among rotational and conventional grazing systems, stream channels, and macroinvertebrates

    USGS Publications Warehouse

    Raymond, K.L.; Vondracek, B.

    2011-01-01

    Cattle grazing in riparian areas can reduce water quality, alter stream channel characteristics, and alter fish and macroinvertebrate assemblage structure. The U.S. Department of Agriculture, Natural Resources Conservation Services has recommended Rotational Grazing (RG) as an alternative management method on livestock and dairy operations to protect riparian areas and water quality. We evaluated 13 stream channel characteristics, benthic macroinvertebrate larvae (BML), and chironomid pupal exuviae (CPE) from 18 sites in the Upper Midwest of the United States in relation to RG and conventional grazing (CG). A Biotic Composite Score comprised of several macroinvertebrate metrics was developed for both the BML assemblage and the CPE assemblage. Multi-Response Permutation Procedures (MRPP) indicated a significant difference in stream channel characteristics between RG and CG. Nonmetric Multidimensional Scaling indicated that RG sites were associated with more stable stream banks, higher quality aquatic habitat, lower soil compaction, and larger particles in the streambed. However, neither MRPP nor Mann-Whitney U tests demonstrated a difference in Biotic Composite Scores for BML or CPE along RG and CG sites. The BML and CPE metrics were significantly correlated, indicating that they were likely responding to similar variables among the study sites. Although stream channel characteristics appeared to respond to grazing management, BML and CPE may have responded to land use throughout the watershed, as well as local land use. ?? 2011 Springer Science+Business Media B.V. (outside the USA).

  15. Analysis of temperature profiles for investigating stream losses beneath ephemeral channels

    USGS Publications Warehouse

    Constantz, J.; Stewart, A.E.; Niswonger, R.; Sarma, L.

    2002-01-01

    Continuous estimates of streamflow are challenging in ephemeral channels. The extremely transient nature of ephemeral streamflows results in shifting channel geometry and degradation in the calibration of streamflow stations. Earlier work suggests that analysis of streambed temperature profiles is a promising technique for estimating streamflow patterns in ephemeral channels. The present work provides a detailed examination of the basis for using heat as a tracer of stream/groundwater exchanges, followed by a description of an appropriate heat and water transport simulation code for ephemeral channels, as well as discussion of several types of temperature analysis techniques to determine streambed percolation rates. Temperature-based percolation rates for three ephemeral stream sites are compared with available surface water estimates of channel loss for these sites. These results are combined with published results to develop conclusions regarding the accuracy of using vertical temperature profiles in estimating channel losses. Comparisons of temperature-based streambed percolation rates with surface water-based channel losses indicate that percolation rates represented 30% to 50% of the total channel loss. The difference is reasonable since channel losses include both vertical and nonvertical component of channel loss as well as potential evapotranspiration losses. The most significant advantage of the use of sediment-temperature profiles is their robust and continuous nature, leading to a long-term record of the timing and duration of channel losses and continuous estimates of streambed percolation. The primary disadvantage is that temperature profiles represent the continuous percolation rate at a single point in an ephemeral channel rather than an average seepage loss from the entire channel.

  16. Activity of the Lyrid meteor stream

    NASA Technical Reports Server (NTRS)

    Lindblad, Bertil A.; Porubcan, V.

    1992-01-01

    The activity of the Lyrid meteor stream is in most years fairly low with a visual rate at maximum (21-22 April) of 5-10 meteors per hour. Short bursts of very high Lyrid activity, with visual hourly rates of 100 or more, have sometimes been reported. These observations generally refer to faint visual meteors. The reported bursts of high activity have occurred in a very narrow interval of solar longitudes (deg 31.24 to 31.38 equinox 1950.0), while the recurrent or 'normal' maximum for bright meteors occurs at solar longitude deg 31.6, or slightly later. A mass separation of the meteors in the shower is thus indicated.

  17. A cost-effective laser scanning method for mapping stream channel geometry and roughness

    NASA Astrophysics Data System (ADS)

    Lam, Norris; Nathanson, Marcus; Lundgren, Niclas; Rehnström, Robin; Lyon, Steve

    2015-04-01

    In this pilot project, we combine an Arduino Uno and SICK LMS111 outdoor laser ranging camera to acquire high resolution topographic area scans for a stream channel. The microprocessor and imaging system was installed in a custom gondola and suspended from a wire cable system. To demonstrate the systems capabilities for capturing stream channel topography, a small stream (< 2m wide) in the Krycklan Catchment Study was temporarily diverted and scanned. Area scans along the stream channel resulted in a point spacing of 4mm and a point cloud density of 5600 points/m2 for the 5m by 2m area. A grain size distribution of the streambed material was extracted from the point cloud using a moving window, local maxima search algorithm. The median, 84th and 90th percentiles (common metrics to describe channel roughness) of this distribution were found to be within the range of measured values while the largest modelled element was approximately 35% smaller than its measured counterpart. The laser scanning system captured grain sizes between 30mm and 255mm (coarse gravel/pebbles and boulders based on the Wentworth (1922) scale). This demonstrates that our system was capable of resolving both large-scale geometry (e.g. bed slope and stream channel width) and small-scale channel roughness elements (e.g. coarse gravel/pebbles and boulders) for the study area. We further show that the point cloud resolution is suitable for estimating ecohydraulic parameters such as Manning's n and hydraulic radius. Although more work is needed to fine-tune our system's design, these preliminary results are encouraging, specifically for those with a limited operational budget.

  18. Development of Relations of Stream Stage to Channel Geometry and Discharge for Stream Segments Simulated with Hydrologic Simulation Program-Fortran (HSPF), Chesapeake Bay Watershed and Adjacent Parts of Virginia, Maryland, and Delaware

    USGS Publications Warehouse

    Moyer, Douglas; Bennett, Mark

    2007-01-01

    The U.S. Geological Survey (USGS), U.S. Environmental Protection Agency (USEPA), Chesapeake Bay Program (CBP), Interstate Commission for the Potomac River Basin (ICPRB), Maryland Department of the Environment (MDE), Virginia Department of Conservation and Recreation (VADCR), and University of Maryland (UMD) are collaborating to improve the resolution of the Chesapeake Bay Regional Watershed Model (CBRWM). This watershed model uses the Hydrologic Simulation Program-Fortran (HSPF) to simulate the fate and transport of nutrients and sediment throughout the Chesapeake Bay watershed and extended areas of Virginia, Maryland, and Delaware. Information from the CBRWM is used by the CBP and other watershed managers to assess the effectiveness of water-quality improvement efforts as well as guide future management activities. A critical step in the improvement of the CBRWM framework was the development of an HSPF function table (FTABLE) for each represented stream channel. The FTABLE is used to relate stage (water depth) in a particular stream channel to associated channel surface area, channel volume, and discharge (streamflow). The primary tool used to generate an FTABLE for each stream channel is the XSECT program, a computer program that requires nine input variables used to represent channel morphology. These input variables are reach length, upstream and downstream elevation, channel bottom width, channel bankfull width, channel bankfull stage, slope of the floodplain, and Manning's roughness coefficient for the channel and floodplain. For the purpose of this study, the nine input variables were grouped into three categories: channel geometry, Manning's roughness coefficient, and channel and floodplain slope. Values of channel geometry for every stream segment represented in CBRWM were obtained by first developing regional regression models that relate basin drainage area to observed values of bankfull width, bankfull depth, and bottom width at each of the 290 USGS

  19. Connecting Streams to Watersheds Through Stream-Groundwater Exchange as Determined from the Channel

    NASA Astrophysics Data System (ADS)

    Gooseff, M. N.; Taptich, M. N.; Wlostowski, A. N.; Gerecht, K.; Payn, R. A.; Ward, A. S.; Bowden, W. B.; Fitzgerald, M.; McGlynn, B. L.; Singha, K.; Wollheim, W. M.

    2012-12-01

    The recent Rapanos decision of the U.S. Supreme Court initiated the notion of 'significant nexus ' (a critical connection between water bodies) to guide determination of covered waters by the Clean Water Act. Significant nexus determination provides an opportunity for hydrologists to inform the spatial and temporal magnitude and direction of connections between surface waters and groundwaters of watersheds. Hydrologists and ecologists have long known that these connections are critical to maintaining streamflow and the biological, chemical, and physical integrity of streams, which is a goal of the Clean Water Act. In this presentation we will discuss an approach to characterize and quantify the strength and the spatial and temporal distributions of connections between streams and watersheds. We will illustrate the application of this novel approach using results from stream tracer experiments and geophysical analyses from several headwater catchments. Our results provide a way forward to informing where and when significant nexus occurs, and therefore where and when the jurisdiction of Clean Water Act applies.

  20. SIMULATING SUB-DECADAL CHANNEL MORPHOLOGIC CHANGE IN EPHEMERAL STREAM NETWORKS

    EPA Science Inventory

    A distributed watershed model was modified to simulate cumulative channel morphologic
    change from multiple runoff events in ephemeral stream networks. The model incorporates the general design of the event-based Kinematic Runoff and" Erosion Model (KINEROS), which describes t...

  1. Do post-mining constructed channels replace functional characteristics of headwater streams?

    EPA Science Inventory

    Mountaintop mining and valley fill (MTMVF) is a method of coal mining common in eastern Kentucky and southern West Virginia. Over 1200 miles of stream channel have been buried by MTMVF. Permits for surface coal mining have recognized constructed drainage ditches associated with ...

  2. Hydraulic and channel characteristics of selected streams in the Kantishna Hills area, Denali National Park and Preserve, Alaska, 1982-84

    USGS Publications Warehouse

    Van Maanen, J.L.; Solin, G.L.

    1988-01-01

    The Kantishna Hills area of the Denali National Park and Preserve contains extensive placer gold deposits. In order to develop plans for the management of this natural resource, and to assess the effects of placer mining on aquatic systems, documentation of the physical characteristics of the streams in the area is needed. Channel morphology, streamflow and streambed composition data were collected at 14 stream reaches in the Kantishna Hills area in September 1982 and in June, July, August , and September of 1983 and 1984. The reaches selected include locations of historical and current mining activity and locations which are undisturbed. The data indicate only minor differences in the physical properties of the streams in mined and unmined drainage basins. The composition of streambeds below mined areas tended to consist of finer sized particles and exhibited less variation in mean particle size than streambed in unmined basins. This may be due in part to the natural sorting of material in stream channels because mined areas, and thus study reaches below them, tended to be located relatively farther downstream (nearer the stream mouth) than were study reaches in basins where no mining has occurred. Changes in the physical properties of the streams which could be directly attributed to mining activity were noted at only one location, Rainy Creek near Kantishna, where the stream had been diverted from its natural channel by the construction of settling ponds. (Author 's abstract)

  3. Problems with indirect determinations of peak streamflows in steep, desert stream channels

    USGS Publications Warehouse

    Glancy, Patrick A.; Williams, Rhea P.

    1994-01-01

    Many peak streamflow values used in flood analyses for desert areas are derived using the Manning equation. Data used in the equation are collected after the flow has subsided, and peak flow is thereby determined indirectly. Most measurement problems and associated errors in peak-flow determinations result from (1) channel erosion or deposition that cannot be discerned or properly evaluated after the fact, (2) unsteady and non-uniform flow that rapidly changes in magnitude, and (3) appreciable sediment transport that has unknown effects on energy dissipation. High calculated velocities and Froude numbers are unacceptable to some investigators. Measurement results could be improved by recording flows with a video camera, installing a recording stream gage and recording rain gages, measuring channel scour with buried chains, analyzing measured data by multiple techniques, and supplementing indirect measurements with direct measurements of stream velocities in similar ephemeral streams.

  4. Biotic drivers of anastomosing channel pattern in headwater streams of the Colorado Rocky Mountains

    NASA Astrophysics Data System (ADS)

    Wohl, E. E.

    2010-12-01

    Most of the headwater rivers in the Colorado Rocky Mountains, USA occur as single channels in steep, narrow valleys. Where variations in bedrock erodibility create segments of wider, lower gradient valleys, however, anastomosing channels can occur if one of two biotic drivers is present. Where a disturbance such as a forest fire or windstorm allows pioneer woody species to colonize valley bottoms, beavers can establish colonies. Beavers build dams that enhance overbank flooding and raise the local water table, limiting the return of conifers and promoting aspen-willow (Populus-Salix) forests that provide food for the beavers. Beavers facilitate the formation of multiple channels by digging small canal-like features across the floodplain and by damming the main channel and promoting channel avulsion. In old-growth conifer forests, channel-spanning logjams can enhance overbank flows that facilitate the development of multiple (sub)parallel channels that extend for 50-300 m downstream. Enhanced overbank flows and multiple channels increase the retention of instream wood, creating a self-enhancing feedback of more jams. At least two thresholds must be crossed for anastomosing driven by logjams to develop; a valley morphology threshold and a wood load threshold. Anastomosing channels are present where stream gradient < 4% and the ratio of (channel width/valley-bottom width) < 0.2; only single channels flow through old-growth forests in valley segments that are steeper and narrower. The average wood piece diameter in old-growth anastomosing channel segments > 20 cm, whereas average piece diameter in forests that have not been disturbed in a century is 10-20 cm; channels in these younger forests do not exhibit anastomosing planforms. Wood load in old-growth anastomosing channels averages 200 m3/ha; old-growth and younger forest single channels average < 100 m3/ha.

  5. Modeling channel morphodynamic response to variations in large wood: Implications for stream rehabilitation in degraded watersheds

    NASA Astrophysics Data System (ADS)

    Davidson, Sarah L.; Eaton, Brett C.

    2013-11-01

    Anthropogenic modification of forests has often decoupled streams from riparian ecosystems and altered natural wood recruitment processes. Extensive research has shown that large wood significantly impacts channel dynamics, especially in small and intermediate sized forested streams where wood pieces are similar in length to channel width, and many stream rehabilitation efforts now involve the addition of large wood to streams. The primary objective of this research is to investigate the relation between large wood and reach scale channel morphology and hydraulics using a physical model, in order to better inform stream rehabilitation programs and future modeling efforts. Four experiments, each comprising numerous five hour runs, were conducted using a Froude-scaled stream table with wood loads scaled to 0 m3/m2, 0.011 m3/m2, 0.016 m3/m2, and 0.022 m3/m2. The addition of large wood significantly decreased the reach-averaged velocity in all experiments, and was associated with decreased sediment transport and increased sediment storage in the reach. Increases in bed and water surface slope compensated for the loss of energy available to transport sediment, and enabled the system to reach a new steady state within the equivalent of 6 to 9 years. Adding wood increased pool frequency, as well as the variability in cross-sectional depth, while causing the reach to undergo a transition from a plane-bed to a riffle-pool morphology. Retention of fine sediment increased the availability of fish spawning substrate, while increased water stage improved connectivity between the channel and the floodplain. The changes in habitat complexity were generally related to the wood load added to the reach, but were also dependent on the orientation and arrangement of the pieces. These results demonstrate that wood may exert a primary control on channel morphodynamics and the availability of aquatic habitat in intermediate sized streams, and suggest that the benefits from stream

  6. Microbial Enzyme Activity, Nutrient Uptake, and Nutrient Limitation in Forested Streams

    EPA Science Inventory

    We measured NH4 + and PO4 -3 uptake length (Sw), uptake velocity (Vf), uptake rate (U), biofilm enzyme activity (BEA), and channel geomorphology in streams draining forested catchments in the Northwestern (Northern California Coast Range and Cascade Mountains) and Southeastern (A...

  7. Measuring flood discharge in unstable stream channels using ground-penetrating radar

    USGS Publications Warehouse

    Spicer, K.R.; Costa, J.E.; Placzek, G.

    1997-01-01

    Field experiments were conducted to test the ability of ground-penetrating radar (GPR) to measure stream-channel cross sections at high flows without the necessity of placing instruments in the water. Experiments were conducted at four U.S. Geological Survey gaging stations in southwest Washington State. With the GPR antenna suspended above the water surface from a bridge or cableway, traverses were made across stream channels to collect radar profile plots of the streambed. Subsequent measurements of water depth were made using conventional depth-measuring equipment (weight and tape) and were used to calculate radar signal velocities. Other streamflow-parameter data were collected to examine their relation to radar signal velocity and to claritv of streambed definition. These initial tests indicate that GPR is capable of producing a reasonably accurate (??20%) stream-channel profile and discharge far more quickly than conventional stream-gaging procedures, while avoiding the problems and hazards associated with placing instruments in the water.

  8. Impact of riverine wetlands construction and operation on stream channel stability: Conceptual framework for geomorphic assessment

    NASA Astrophysics Data System (ADS)

    Rhoads, Bruce L.; Miller, Michael V.

    1990-11-01

    Wetland conservation is a critical environmental management issue. An emerging approach to this issue involves the construction of wetland environments. Because our understanding of wetlands function is incomplete and such projects must be monitored closely because they may have unanticipated impacts on ecological, hydrological, and geomorphological systems. Assessment of project-related impacts on stream channel stability is an important component of riverine wetlands construction and operation because enhanced erosion or deposition associated with unstable rivers can lead to loss of property, reductions in channel capacity, and degradation of water quality, aquatic habitat, and riparian aesthetics. The water/sediment budget concept provides a scientific framework for evaluating the impact of riverine wetlands construction and operation on stream channel stability. This concept is based on the principle of conservation of mass, i.e., the total amount of water and sediment moving through a specific reach of river must be conserved. Long-term measurements of channel sediment storage and other water/sediment budget components provide the basis for distinguishing between project-related impacts and those resulting from other causes. Changes in channel sediment storage that occur as a result of changes in internal inputs of water or sediment signal a project-related impact, whereas those associated with changes in upstream or tributary inputs denote a change in environmental conditions elsewhere in the watershed. A geomorphic assessment program based on the water/sediment budget concept has been implemented at the site of the Des Plaines River Wetlands Demonstration Projection near Chicago, Illinois, USA. Channel sediment storage changed little during the initial construction phase, suggesting that thus far the project has not affected stream channel stability.

  9. Verification of roughness coefficients for selected natural and constructed stream channels in Arizona

    USGS Publications Warehouse

    Phillips, Jeff V.; Ingersoll, Todd L.

    1998-01-01

    Physical and hydraulic characteristics are presented for 14 river and canal reaches in Arizona for which 37 roughness coefficients have been determined. The verified roughness coefficients which ranged from 0.017 to 0.067, were computed from discharges, channel geometry, and water-surface profiles measured at each of the sites. The information given for each stream segment includes bed and bank descriptions, data tables showing hydraulic components, a plan view, cross-section plots, and color photographs that can be used as a comparison aid in determining roughness coefficients for similarly channeled streams. Relations derived from the data presented relate Manning's roughness coefficient (n) to various hydraulic components. For gravel-bed streams, verified roughness coefficients are related to median grain size of the bed material and hydraulic radius resulting in an equation that can be used to transfer results to similar dry-land channels. The equation developed for base values of n for gravel-bed channels in Arizona is significantly different from similarly derived equations for other regions of the United States and the world.

  10. Coupled Radon and Water Temperature Measurements to Characterize the Effects of Altered Stream Channel Planform

    NASA Astrophysics Data System (ADS)

    Amerson, B. E.; Poole, G. C.; O'Daniel, S. J.

    2013-12-01

    In summer 2011, a 2.6 km reach of Meacham Creek, Oregon, USA, was altered from a straight, steep wall-based channel to more a sinuous, low-gradient channel. Key objectives of this restoration project were to increase the rate and magnitude of hyporheic exchange. The overarching goal was to initiate increased buffering and lagging of water temperature in the subsurface to mitigate warm surface water temperature in Meacham Creek, an important spawning and rearing stream for depressed populations of Chinook salmon and summer steelhead. To evaluate progress toward project goals and objectives, stream temperature and groundwater temperature in 22 wells have been measured hourly at the restoration site since March 2011. In addition, the radioactive isotope 222Rn was measured in each well and in the surface water on two occasions. The relative residence time of down welling stream water measured in the wells can be determined by ranked amplitude depression and lagged phase of annual temperature signals in the wells relative to that of the open channel flow. Residence times predicted by annual temperature signal dynamics are corroborated by 222Rn concentrations in each well. The data collected to date provide a foundation for developing a groundwater thermal model to predict the effects of channel reconfiguration on ground-surface water exchange and associated temperature effects at the reach scale.

  11. Channel morphology and sediment origin in streams draining the Georgia Piedmont

    NASA Astrophysics Data System (ADS)

    Schoonover, Jon E.; Lockaby, B. Graeme; Shaw, Joey N.

    2007-08-01

    SummaryUrbanization is common across much of the US However, the Southeast, including the Georgia Piedmont, is developing much faster than other regions ( USDA, NRCS, 2004). Consequently, water resources in the Middle Chattahoochee Watershed of western Georgia are threatened by increased sedimentation from extensive urban development as well as from other land covers such as livestock grazing and silviculture. A 2-yr study was developed to assess sediment transport and origin across 16 watersheds draining urban, developing, pastoral, managed forest and unmanaged forest landscapes. Total suspended solids (TSS) and total dissolved solids (TDS) yields and sediment rating curves were measured concomitantly with channel morphometry measurements in each stream. Urban streams featured the lowest baseflow concentrations, but sediment concentrations rose rapidly during stormflow in urban streams. Detailed cross-sections assessed channel stability and showed that pasture streams were the most unstable streams during stormflows. Finally, sediment source tracking was performed in a subset of intermittent streams using amorphous to crystalline ratios of iron to estimate the fraction of sediment coming from instream vs. landscape sources. Artificial stormflows were generated to mobilize bed sediment for the development of an instream sediment signature. If these ratios differed during natural events, it was inferred the differences were due to sediments mobilized from the terrestrial landscape. Results indicated that higher ratios of amorphous:crystalline Fe occurred during artificial floods (urban = 0.60 and unmanaged forest = 0.14) than natural stormflows (urban = 0.08 and unmanaged forest = 0.03) in watersheds dominated by urban and unmanaged forest land cover, suggesting that crystalline (i.e., terrestrial) sources of Fe were transported to the stream during rainfall events.

  12. Riparian Vegetation Influence on Stream Channel Dimensions: Key Driving Mechanisms and Their Timescales

    NASA Astrophysics Data System (ADS)

    McBride, M.; Hession, W.; Rizzo, D. M.; Thompson, D. M.

    2006-05-01

    Combined results from field-based investigations and flume experiments demonstrated key mechanisms driving channel widening following the reforestation of riparian zones in small streams. Riparian reforestation is a common occurrence either due to restoration efforts, intended to improve water quality, temperature regimes, and in-stream physical habitat or due to passive reforestation that is common when agricultural land uses decline. Previous studies have documented the influence of riparian vegetation on channel size, but driving mechanisms and the timescales at which they operate have not been evaluated. Field-based investigations were conducted in the Sleepers River basin in northeastern Vermont to revisit streams that were previously surveyed in the 1960s. We measured channel dimensions, large woody debris (LWD), and steam velocities in reaches with non-forested and forested riparian vegetation, in reaches currently in transition between vegetation types, and reaches with no change in riparian vegetation over the last 40 years. Flume experiments were performed with a 1:5 scale, fixed-bed model of a tributary to Sleepers River. Two types of riparian vegetation scenarios were simulated: 1) forested, with rigid, wooden dowels; and 2) non-forested, with synthetic grass carpeting. Three-dimensional velocities were measured during flume runs to determine turbulent kinetic energy (TKE) during overbank flows. Results showed that stream reaches with recently reforested vegetation have widened since the mid 1960s, but are not as wide as reaches with older riparian forests. LWD was more abundant in reaches with older riparian forests than in reaches with younger forests; however, scour around LWD did not appear to be a significant driving mechanism for channel widening. Velocity and TKE measurements from the prototype stream and the flume model indicate that TKE was significantly elevated in reforested reaches. Given that bed and bank erosion can be amplified in flows

  13. Regional bankfull-channel dimensions of non-urban wadeable streams in Indiana

    USGS Publications Warehouse

    Robinson, Bret A.

    2013-01-01

    During floods, damage to properties and community infrastructure may result from inundation and the processes of erosion. The damages imparted by erosion are collectively termed the fluvial erosion hazard (FEH), and the Indiana Silver Jackets Multi-agency Hazard Mitigation Taskforce is supporting a program to build tools that will assist Indiana property owners and communities with FEH-mitigation efforts. As part of that program, regional channel-dimension relations are identified for non-urban wadeable streams in Indiana. With a site-selection process that targeted the three largest physiographic regions of the state, field work was completed to measure channel-dimension and channel-geometry characteristics across Indiana. In total, 82 sites were identified for data collection; 25 in the Northern Moraine and Lake region, 31 in the Central Till Plain region, and 26 in the Southern Hills and Lowlands region. Following well established methods, for each data-collection site, effort was applied to identify bankfull stage, determine bankfull-channel dimensions, and document channel-geometry characteristics that allowed for determinations of channel classification. In this report, regional bankfull-channel dimension results are presented as a combination of plots and regression equations that identify the relations between drainage area and the bankfull-channel dimensions of width, mean depth, and cross-sectional area. This investigation found that the channel-dimension data support independent relations for each of the three physiographic regions noted above. Furthermore, these relations show that, for any given drainage area, northern Indiana channels have the smallest predicted dimensions, southern Indiana channels have the largest predicted dimensions, and central Indiana channels are intermediate in their predicted dimensions. When considering the suite of variables that influence bankfull-channel dimensions, it appears that contrasting runoff characteristics

  14. Channel and Catchment Morphology, Spatial Intermittency, and Carbon Chemistry of a Headwater Stream

    NASA Astrophysics Data System (ADS)

    O'Donnell, B.; Wondzell, S. M.; Serchan, S. P.; Haggerty, R.; Ward, A. S.; Schmadel, N. M.

    2015-12-01

    We investigated carbon dynamics in a steep, forested, headwater stream in the Cascade Mountains of western Oregon, USA. Measurements from a continuously recording pCO2 probe located near the mouth of the catchment showed that the stream was always super saturated with CO2 with respect to atmospheric concentrations, ranging from 500 ppm in mid-winter to as much as 3,500 ppm in late summer. Continuous measurements of pCO2 from a hyporheic well suggested that the hyporheic zone was a likely source of the super-saturated stream water because the hyporheic concentrations of CO2 ranged from a mid-winter low of 4,000 ppm to a late summer high of 16,000 ppm. Here, we investigate the causes for the large seasonal changes in pCO2 in the stream water. We conducted longitudinal synoptic surveys of flow and carbon chemistry over the period of baseflow recession during summer 2015. The channel is narrow and steep with occasional bedrock segments. However, debris flow deposits in the lower portions of the studied reach create wider valley floors where hyporheic exchange can capture 100% of the streamflow when discharge is very low. At the beginning of the summer when discharge was relatively high, flow was spatially continuous, but by mid-summer, stream flow became spatially discontinuous. Upwelling hyporheic water in these locations appears to be super saturated with CO2. In early summer, the amount of upwelling hyporheic water was small relative to stream discharge so that hyporheic exchange had only a modest influence on stream pCO2. Later in the summer, when discharge was much smaller relative to hyporheic exchange, we observed much greater spatial variability in CO2, which averaged 2720 ppm downstream of dry segments longer than 5 m but only averaged 980 ppm in wet segments and below shorter dry segments. Over the intervening wet segments, CO2 appears to be evaded from the stream as concentrations decreased rapidly. Also, upslope accumulated area appears to control lateral

  15. Tracing sources of organic matter in adjacent urban streams having different degrees of channel modification.

    PubMed

    Duan, Shuiwang; Amon, Rainer M W; Brinkmeyer, Robin L

    2014-07-01

    Urbanization and stream-channel modifications affect organic matter concentrations and quality in streams, by altering allochthonous organic matter input and in-stream transformation. This study uses multiple tracers (δ(13)C, δ(15)N, C/N ratio, and chlorophyll-a) to track sources of organic matter in two highly urbanized bayous in Houston (Texas, USA). Wastewater treatment plants (WWTPs) are located in headwaters of both bayous and contribute more than 75% to water flow. Low isotopic relatedness to natural end-members and enriched δ(15)N values suggest the influence of WWTPs on the composition of all organic matter fractions. The two bayous differ in degree of channel improvement resulting in different responses to hydrological conditions. During high flow conditions, the influence of terrestrial organic matter and sediment resuspension was much more pronounced in the Buffalo Bayou than in the concrete-lined White Oak Bayou. Particulate organic matter (POM) in White Oak Bayou had similar values of enriched δ(15)N in all subsegments, whereas in Buffalo Bayou, the degree of δ(15)N enrichment was less in the subsegments of the lower watershed. The difference in riparian zone contributions and interactions with sediments/soils was likely responsible for the compositional differences between the two bayous. Phytoplankton inputs were significantly higher in the bayous, especially in slow-flowing sections, relative to the reference sites, and elevated phytoplankton inputs accounted for the observed stable C isotope differences between FPOM and high molecular weight dissolved organic matter (HMW DOM). Relative to POM, HMW DOM in the bayous was similar to WWTP effluents and showed minor longitudinal variability in both streams suggesting that WWTPs contribute much of the DOM in the systems. Urbanization has a major influence on organic matter sources and quality in these urban water bodies and these changes seem further enhanced by stream channel modifications.

  16. Monitoring stream stage, channel profile, and aqueous conductivity with time domain reflectometry (TDR).

    SciTech Connect

    Brainard, James Robert; Tidwell, Vincent Carroll; Coplen, Amy K.; Ruby, Douglas Scott; Coombs, Jason R.; Wright, Jerome L.; Roberts, Jesse Daniel

    2004-11-01

    Time domain reflectometry (TDR) operates by propagating a radar frequency electromagnetic pulse down a transmission line while monitoring the reflected signal. As the electromagnetic pulse propagates along the transmission line, it is subject to impedance by the dielectric properties of the media along the transmission line (e.g., air, water, sediment), reflection at dielectric discontinuities (e.g., air-water or water-sediment interface), and attenuation by electrically conductive materials (e.g., salts, clays). Taken together, these characteristics provide a basis for integrated stream monitoring; specifically, concurrent measurement of stream stage, channel profile and aqueous conductivity. Here, we make novel application of TDR within the context of stream monitoring. Efforts toward this goal followed three critical phases. First, a means of extracting the desired stream parameters from measured TDR traces was required. Analysis was complicated by the fact that interface location and aqueous conductivity vary concurrently and multiple interfaces may be present at any time. For this reason a physically based multisection model employing the S11 scatter function and Cole-Cole parameters for dielectric dispersion and loss was developed to analyze acquired TDR traces. Second, we explored the capability of this multisection modeling approach for interpreting TDR data acquired from complex environments, such as encountered in stream monitoring. A series of laboratory tank experiments were performed in which the depth of water, depth of sediment, and conductivity were varied systematically. Comparisons between modeled and independently measured data indicate that TDR measurements can be made with an accuracy of {+-}3.4x10{sup -3} m for sensing the location of an air/water or water/sediment interface and {+-}7.4% of actual for the aqueous conductivity. Third, monitoring stations were sited on the Rio Grande and Paria rivers to evaluate performance of the TDR system

  17. Rapid estimation of recharge potential in ephemeral-stream channels using electromagnetic methods, and measurements of channel and vegetation characteristics

    USGS Publications Warehouse

    Callegary, J.B.; Leenhouts, J.M.; Paretti, N.V.; Jones, C.A.

    2007-01-01

    To classify recharge potential (RCP) in ephemeral-stream channels, a method was developed that incorporates information about channel geometry, vegetation characteristics, and bed-sediment apparent electrical conductivity (??a). Recharge potential is not independently measurable, but is instead formulated as a site-specific, qualitative parameter. We used data from 259 transects across two ephemeral-stream channels near Sierra Vista, Arizona, a location with a semiarid climate. Seven data types were collected: ??a averaged over two depth intervals (0-3 m, and 0-6 m), channel incision depth and width, diameter-at-breast-height of the largest tree, woody-plant and grass density. A two-tiered system was used to classify a transect's RCP. In the first tier, transects were categorized by estimates of near-surface-sediment hydraulic permeability as low, moderate, or high using measurements of 0-3 m-depth ??a. Each of these categories was subdivided into low, medium, or high RCP classes using the remaining six data types, thus yielding a total of nine RCP designations. Six sites in the study area were used to compare RCP and ??a with previously measured surrogates for hydraulic permeability. Borehole-averaged percent fines showed a moderate correlation with both shallow and deep ??a measurements, however, correlation of point measurements of saturated hydraulic conductivity, percent fines, and cylinder infiltrometer measurements with ??a and RCP was generally poor. The poor correlation was probably caused by the relatively large measurement volume and spatial averaging of ??a compared with the spatially-limited point measurements. Because of the comparatively large spatial extent of measurement transects and variety of data types collected, RCP estimates can give a more complete picture of the major factors affecting recharge at a site than is possible through point or borehole-averaged estimates of hydraulic permeability alone. ?? 2007 Elsevier B.V. All rights reserved.

  18. Bankfull Discharge and Channel Characteristics of Streams in New York State

    USGS Publications Warehouse

    Mulvihill, Christiane I.; Baldigo, Barry P.; Miller, Sarah J.; DeKoskie, Douglas; DuBois, Joel

    2009-01-01

    Equations that relate drainage area to bankfull discharge and channel characteristics (such as width, depth, and cross-sectional area) at gaged sites are needed to help define bankfull discharge and channel characteristics at ungaged sites and can be used in stream-restoration and protection projects, stream-channel classification, and channel assessments. These equations are intended to serve as a guide for streams in areas of similar hydrologic, climatic, and physiographic conditions. New York State contains eight hydrologic regions that were previously delineated on the basis of high-flow (flood) characteristics. This report seeks to increase understanding of the factors affecting bankfull discharge and channel characteristics to drainage-area size relations in New York State by providing an in-depth analysis of seven previously published regional bankfull-discharge and channel-characteristics curves. Stream-survey data and discharge records from 281 cross sections at 82 streamflow-gaging stations were used in regression analyses to relate drainage area to bankfull discharge and bankfull-channel width, depth, and cross-sectional area. The R2 and standard errors of estimate of each regional equation were compared to the R2 and standard errors of estimate for the statewide (pooled) model to determine if regionalizing data reduced model variability. It was found that regional models typically yield less variable results than those obtained using pooled statewide equations, which indicates statistically significant regional differences in bankfull-discharge and channel-characteristics relations. All but two of the bankfull-discharge curves are within the 95-percent confidence interval bands of the statewide model; all the models have statistically similar slopes, and only one model has a unique intercept. Regional variations in channel-characteristics models of bankfull width, depth, and cross-sectional area were more prevalent than for bankfull discharge, though

  19. An Alternative to Channel-Centered Views of the Landscape for Understanding Modern Streams in the Mid-Atlantic Piedmont Region, Eastern USA

    NASA Astrophysics Data System (ADS)

    Merritts, D. J.; Walter, R. C.; Rahnis, M. A.; Oberholtzer, W.

    2008-12-01

    older) alluvial fans and fan pediments at tributary confluences. Two-dimensional views along incised stream banks give the appearance of overbank sediment atop stream bed gravel, but the fine- grained bank (1-5 m) is mostly the result of slackwater sedimentation from damming, whereas the underlying gravel polygenetic in origin. The gravel is Pleistocene or older in age, and not the result of active stream channel migration and point-bar formation during the Holocene. The Holocene warm period was dominated by valley-bottom stability and widespread wetland formation, fostered by beaver activity. Modern stream channel forms are largely the result of incision and bank erosion in response to dam breaching and base- level fall, not hydraulic adjustment to prevailing (or changed) supplies of sediment and water. Rather, channel dimensions are controlled by thickness of historic sediment (i.e., dam height and distance upstream of dam) and depth of incision. Changes in slope (i.e., rapid base-level fall), rather than changes in sediment supply and runoff, are powerful determinants of modern channel forms, and there are no pre-settlement forms for comparison. At present, there is an "impedance mismatch" between those with channel-centered views and those who view the deeply weathered mid-Atlantic landscape as the result of hundreds of thousands to millions of years of slow landscape evolution.

  20. The impacts of ski slope development on stream channel morphology in the White River National Forest, Colorado, USA

    NASA Astrophysics Data System (ADS)

    David, Gabrielle C. L.; Bledsoe, Brian P.; Merritt, David M.; Wohl, Ellen

    2009-02-01

    The combined influence of tree-clearing, road construction, snowmaking, and machine-grading can cause increased flow and sediment loads along streams in or adjacent to commercial ski resorts. These changes to stream channels can increase bank failures, bed material size, pool scour, and, in extreme cases, channel incision. We used field data from the White River National Forest in Colorado, which includes several major ski resorts, to test the hypothesis that ski slope development causes a significant difference in bank stability, undercut banks, fine sediment, wood load, pool residual depth, and particle size ( D84) between the ski area project streams and reference streams. We further hypothesize that the changes in a stream are mitigated by the density and type of vegetation growing along the banks. A significant difference is defined as a project stream that is outside the range of variability of the reference streams. To test these hypotheses, we surveyed channel conditions, channel dimensions, and vegetation along 47 stream reaches (200-300 m in length). Twenty-four of these streams are within ski areas (project streams), either adjacent to or downstream from ski slopes. Twenty-three reference streams with very little to no development in their basins are used to define reference conditions of bank stability, bank undercutting, bank height, wood load, pool residual depth, sediment size, and vegetation structure. A combination of statistical techniques, including Principal Components Analysis and Classification and Regression Tree Analysis, was used to assess the controls on stream channel morphology and to analyze the differences between project and reference streams. Project streams that are significantly different than reference streams have a combination of a higher percentage of fine sediment, smaller pool residual depth, and higher percentage of unstable banks. The impacted project streams have bed material derived from granitic rocks and a lower density

  1. BK channels: multiple sensors, one activation gate.

    PubMed

    Yang, Huanghe; Zhang, Guohui; Cui, Jianmin

    2015-01-01

    Ion transport across cell membranes is essential to cell communication and signaling. Passive ion transport is mediated by ion channels, membrane proteins that create ion conducting pores across cell membrane to allow ion flux down electrochemical gradient. Under physiological conditions, majority of ion channel pores are not constitutively open. Instead, structural region(s) within these pores breaks the continuity of the aqueous ion pathway, thereby serves as activation gate(s) to control ions flow in and out. To achieve spatially and temporally regulated ion flux in cells, many ion channels have evolved sensors to detect various environmental stimuli or the metabolic states of the cell and trigger global conformational changes, thereby dynamically operate the opening and closing of their activation gate. The sensors of ion channels can be broadly categorized as chemical sensors and physical sensors to respond to chemical (such as neural transmitters, nucleotides and ions) and physical (such as voltage, mechanical force and temperature) signals, respectively. With the rapidly growing structural and functional information of different types of ion channels, it is now critical to understand how ion channel sensors dynamically control their gates at molecular and atomic level. The voltage and Ca(2+) activated BK channels, a K(+) channel with an electrical sensor and multiple chemical sensors, provide a unique model system for us to understand how physical and chemical energy synergistically operate its activation gate.

  2. BK channels: multiple sensors, one activation gate

    PubMed Central

    Yang, Huanghe; Zhang, Guohui; Cui, Jianmin

    2015-01-01

    Ion transport across cell membranes is essential to cell communication and signaling. Passive ion transport is mediated by ion channels, membrane proteins that create ion conducting pores across cell membrane to allow ion flux down electrochemical gradient. Under physiological conditions, majority of ion channel pores are not constitutively open. Instead, structural region(s) within these pores breaks the continuity of the aqueous ion pathway, thereby serves as activation gate(s) to control ions flow in and out. To achieve spatially and temporally regulated ion flux in cells, many ion channels have evolved sensors to detect various environmental stimuli or the metabolic states of the cell and trigger global conformational changes, thereby dynamically operate the opening and closing of their activation gate. The sensors of ion channels can be broadly categorized as chemical sensors and physical sensors to respond to chemical (such as neural transmitters, nucleotides and ions) and physical (such as voltage, mechanical force and temperature) signals, respectively. With the rapidly growing structural and functional information of different types of ion channels, it is now critical to understand how ion channel sensors dynamically control their gates at molecular and atomic level. The voltage and Ca2+ activated BK channels, a K+ channel with an electrical sensor and multiple chemical sensors, provide a unique model system for us to understand how physical and chemical energy synergistically operate its activation gate. PMID:25705194

  3. Effects of an restorated stream channel on groundwater dynamics and quality

    NASA Astrophysics Data System (ADS)

    Lehr, Christian; Lewandowski, Jörg; Lischeid, Gunnar

    2013-04-01

    The effects of the restoration of an former oxbow on the interactions of groundwater and stream water is analyzed by principal component analysis of the water table series. With this approach it is possible to quantify in a spatial discrete way the impact of processes on the ground water table (Lischeid et al. 2010). At the Freienbrink site, situated in the east of Berlin (Germany), water tables were measured during a four year period at up to 18 groundwater and 2 stream water sites along two transects across an artificial peninsula surrounded by an oxbow and the regulated stream channel. In the first two years of the monitoring period the straight, artificial stream channel was the main stream channel and the oxbow was hydrologically decoupled at the upstream end. In the second two years it was the opposite. After restoration the former shortcut is now hydrologically decoupled and the former oxbow reactivated. In a study about the first year of the monitoring period colmation of the oxbow has been identified as main hindrance for the exchange of groundwater and stream water (Lewandowski et al., 2009). Subsequently the effects of the removal of the colmation in the former oxbow during the restoration process is analyzed. The analysis of the propagation of hydrological signals in the coupled groundwater stream water system is combined with the analysis of the spatial and temporal dynamics of the dominant hydrogeochemical processes. Those are identified with a non-linear variant of the principal component analysis based on water quality data. References Lewandowski, J.; Lischeid, G. & Nützmann, G. 2009. Drivers of water level fluctuations and hydrological exchange between groundwater and surface water at the lowland River Spree (Germany): field study and statistical analyses. Hydrological Processes, 23(15), 2117-2128. doi: 10.1002/hyp.7277. Lischeid, G.; Natkhin, M.; Steidl, J.; Dietrich, O.; Dannowski, R. & Merz, C. 2010. Assessing coupling between lakes and

  4. Relative influence of different habitat factors on creek chub population structure within channelized agricultural headwater streams in central Ohio

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Creek chubs (Semotilus atromaculatus) are commonly found within channelized agricultural headwater streams within the Midwestern United States. Understanding the relationships of this headwater fish species with different habitat factors will provide information that can assist with developing resto...

  5. Active Stream Length Dynamics in Headwater Catchments Spanning Physiographic Provinces in the Appalachian Highlands

    NASA Astrophysics Data System (ADS)

    Jensen, C.; McGuire, K. J.

    2015-12-01

    One of the most basic descriptions of streams is the presence of channelized flow. However, this seemingly simple query goes unanswered for the majority of headwater networks, as stream length expands and contracts with the wetness of catchments seasonally, interannually, and in response to storm events. Although streams are known to grow and shrink, a lack of information on longitudinal dynamics across different geographic regions precludes effective management. Understanding the temporal variation in temporary network length over a broad range of settings is critical for policy decisions that impact aquatic ecosystem health. This project characterizes changes in active stream length for forested headwater catchments spanning four physiographic provinces of the Appalachian Highlands: the New England at Hubbard Brook Experimental Forest, New Hampshire; Valley and Ridge at Poverty Creek and the North Fork of Big Stony Creek in Jefferson National Forest, Virginia; Blue Ridge at Coweeta Hydrologic Laboratory, North Carolina; and Appalachian Plateau at Fernow Experimental Forest, West Virginia. Multivariate statistical analysis confirms these provinces exhibit characteristic topographies reflecting differences in climate, geology, and environmental history and, thus, merit separate consideration. The active streams of three watersheds (<45 ha) in each study area were mapped six times to capture a variety of moderate flow conditions that can be expected most of the time (i.e., exceedance probabilities between 25 to 75%). The geomorphic channel and channel heads were additionally mapped to determine how active stream length variability relates to the development of the geomorphic network. We found that drainage density can vary up to four-fold with discharge. Stream contraction primarily proceeds by increasing disconnection and disintegration into pools, while the number of flow origins remains constant except at high and low extremes of discharge. This work demonstrates

  6. Channel Morphology and Hydraulics as Controls on Spatial Patterns of Invertebrate Drift in a Mountain Stream.

    NASA Astrophysics Data System (ADS)

    Cienciala, P.; Hassan, M. A.

    2015-12-01

    In this research we linked spatial variability of invertebrate drift characteristics (e.g. flux, concentration, mean body size) in a mountain stream to channel morphology and hydraulic properties such as at-a-point and depth-averaged velocity and shear velocity. The study was conducted in East Creek, a small stream in British Columbia in which reach-scale morphology transitions from cobble-dominated plane-bed to gravel-bed pool-riffle. To achieve our goal, we collected vertical profiles of invertebrate drift and time-averaged velocity in various morphological units within the study reaches. The data were analyzed using linear mixed model. Our reach-scale results suggested that, generally, the study reaches had statistically similar drift characteristics despite their contrasting morphologies. At the within-reach scale, different drift characteristics displayed different trends in relation to morphological and hydraulic properties of the channel. Longitudinally, highest drift flux occurred in riffle-pool transitions. We attributed this finding primarily to higher flow velocity because there were no statistically significant differences in drift concentration between morphological units. In the vertical dimension, highest drift flux occurred near the surface owing to a combination of higher drift concentration and higher flow velocity. A different pattern was observed for mean body size of drifting invertebrates. On average, body size was smallest in riffle-pool transitions and largest near the bed. The combination of velocity, drift concentration, and drift body size structure resulted in similar biomass flux estimates in all morphological units. In the vertical dimension, biomass flux appeared to be highest near the water surface. Generally, hydraulic variables seemed to be relatively poor predictors of drift concentration and mean body size of drifting invertebrates. Our findings reveal a complex relationship between channel morphology and hydraulics and various

  7. Channel water balance and exchange with subsurface flow along a mountain headwater stream in Montana, United States

    USGS Publications Warehouse

    Payn, R.A.; Gooseff, M.N.; McGlynn, B.L.; Bencala, K.E.; Wondzell, S.M.

    2009-01-01

    Channel water balances of contiguous reaches along streams represent a poorly understood scale of stream-subsurface interaction. We measured reach water balances along a headwater stream in Montana, United States, during summer base flow recessions. Reach water balances were estimated from series of tracer tests in 13 consecutive reaches delineated evenly along a 2.6 km valley segment. For each reach, we estimated net change in discharge, gross hydrologic loss, and gross hydrologic gain from tracer dilution and mass recovery. Four series of tracer tests were performed during relatively high, intermediate, and low base flow conditions. The relative distribution of channel water along the stream was strongly related to a transition in valley structure, with a general increase in gross losses through the recession. During tracer tests at intermediate and low flows, there were frequent substantial losses of tracer mass (>10%) that could not be explained by net loss in flow over the reach, indicating that many of the study reaches were concurrently losing and gaining water. For example, one reach with little net change in discharge exchanged nearly 20% of upstream flow with gains and losses along the reach. These substantial bidirectional exchanges suggest that some channel interactions with subsurface flow paths were not measurable by net change in flow or transient storage of recovered tracer. Understanding bidirectional channel water balances in stream reaches along valleys is critical to an accurate assessment of stream solute fate and transport and to a full assessment of exchanges between the stream channel and surrounding subsurface.

  8. Main-channel slopes of selected streams in Iowa for estimation of flood-frequency discharges

    USGS Publications Warehouse

    Eash, David A.

    2003-01-01

    This report describes a statewide study conducted to develop main-channel slope (MCS) curves for 138 selected streams in Iowa with drainage areas greater than 100 square miles. MCS values determined from the curves can be used in regression equations for estimating floodfrequency discharges. Multivariable regression equations previously developed for two of the three hydrologic regions defined for Iowa require the measurement of MCS. Main-channel slope is a difficult measurement to obtain for large streams using 1:24,000-scale topographic maps. The curves developed in this report provide a simplified method for determining MCS values for sites located along large streams in Iowa within hydrologic Regions 2 and 3. The curves were developed using MCS values quantified for 2,058 selected sites along 138 selected streams in Iowa. A geographic information system (GIS) technique and 1:24,000-scale topographic data were used to quantify MCS values for the stream sites. The sites were selected at about 5-mile intervals along the streams. River miles were quantified for each stream site using a GIS program. Data points for river-mile and MCS values were plotted and a best-fit curve was developed for each stream. An adjustment was applied to all 138 curves to compensate for differences in MCS values between manual measurements and GIS quantifications. The multivariable equations for Regions 2 and 3 were developed using manual measurements of MCS. A comparison of manual measurements and GIS quantifications of MCS indicates that manual measurements typically produce greater values of MCS compared to GIS quantifications. Median differences between manual measurements and GIS quantifications of MCS are 14.8 and 17.7 percent for Regions 2 and 3, respectively. Comparisons of percentage differences between flood-frequency discharges calculated using MCS values of manual measurements and GIS quantifications indicate that use of GIS values of MCS for Region 3 substantially

  9. TRPC channel activation by extracellular thioredoxin

    PubMed Central

    Xu, Shang-Zhong; Sukumar, Piruthivi; Zeng, Fanning; Li, Jing; Jairaman, Amit; English, Anne; Naylor, Jacqueline; Ciurtin, Coziana; Majeed, Yasser; Milligan, Carol J; Bahnasi, Yahya M; AL-Shawaf, Eman; Porter, Karen E; Jiang, Lin-Hua; Emery, Paul; Sivaprasadarao, Asipu; Beech, David J

    2009-01-01

    Mammalian homologues of Drosophila melanogaster transient receptor potential (TRP) are a large family of multimeric cation channels that act, or putatively act, as sensors of one or more chemical factor1,2. Major research objectives are the identification of endogenous activators and the determination of cellular and tissue functions of these novel channels. Here we show activation of TRPC5 homomultimeric and TRPC5-TRPC1 heteromultimeric channels3-5 by extracellular reduced thioredoxin acting by breaking a disulphide bridge in the predicted extracellular loop adjacent to the ion-selectivity filter of TRPC5. Thioredoxin is an endogenous redox protein with established intracellular functions, but it is also secreted and its extracellular targets are largely unknown6-9. Particularly high extracellular concentrations of thioredoxin are apparent in rheumatoid arthritis8,10-12, an inflammatory joint disease disabling millions of people world-wide13. We show that TRPC5 and TRPC1 are expressed in secretory fibroblast-like synoviocytes from patients with rheumatoid arthritis, endogenous TRPC5-TRPC1 channels of the cells are activated by reduced thioredoxin, and blockade of the channels enhances secretory activity and prevents suppression of secretion by thioredoxin. The data suggest a novel ion channel activation mechanism that couples extracellular thioredoxin to cell function. PMID:18172497

  10. Machine-Learning Based Channel Quality and Stability Estimation for Stream-Based Multichannel Wireless Sensor Networks

    PubMed Central

    Rehan, Waqas; Fischer, Stefan; Rehan, Maaz

    2016-01-01

    Wireless sensor networks (WSNs) have become more and more diversified and are today able to also support high data rate applications, such as multimedia. In this case, per-packet channel handshaking/switching may result in inducing additional overheads, such as energy consumption, delays and, therefore, data loss. One of the solutions is to perform stream-based channel allocation where channel handshaking is performed once before transmitting the whole data stream. Deciding stream-based channel allocation is more critical in case of multichannel WSNs where channels of different quality/stability are available and the wish for high performance requires sensor nodes to switch to the best among the available channels. In this work, we will focus on devising mechanisms that perform channel quality/stability estimation in order to improve the accommodation of stream-based communication in multichannel wireless sensor networks. For performing channel quality assessment, we have formulated a composite metric, which we call channel rank measurement (CRM), that can demarcate channels into good, intermediate and bad quality on the basis of the standard deviation of the received signal strength indicator (RSSI) and the average of the link quality indicator (LQI) of the received packets. CRM is then used to generate a data set for training a supervised machine learning-based algorithm (which we call Normal Equation based Channel quality prediction (NEC) algorithm) in such a way that it may perform instantaneous channel rank estimation of any channel. Subsequently, two robust extensions of the NEC algorithm are proposed (which we call Normal Equation based Weighted Moving Average Channel quality prediction (NEWMAC) algorithm and Normal Equation based Aggregate Maturity Criteria with Beta Tracking based Channel weight prediction (NEAMCBTC) algorithm), that can perform channel quality estimation on the basis of both current and past values of channel rank estimation. In the end

  11. Machine-Learning Based Channel Quality and Stability Estimation for Stream-Based Multichannel Wireless Sensor Networks.

    PubMed

    Rehan, Waqas; Fischer, Stefan; Rehan, Maaz

    2016-01-01

    Wireless sensor networks (WSNs) have become more and more diversified and are today able to also support high data rate applications, such as multimedia. In this case, per-packet channel handshaking/switching may result in inducing additional overheads, such as energy consumption, delays and, therefore, data loss. One of the solutions is to perform stream-based channel allocation where channel handshaking is performed once before transmitting the whole data stream. Deciding stream-based channel allocation is more critical in case of multichannel WSNs where channels of different quality/stability are available and the wish for high performance requires sensor nodes to switch to the best among the available channels. In this work, we will focus on devising mechanisms that perform channel quality/stability estimation in order to improve the accommodation of stream-based communication in multichannel wireless sensor networks. For performing channel quality assessment, we have formulated a composite metric, which we call channel rank measurement (CRM), that can demarcate channels into good, intermediate and bad quality on the basis of the standard deviation of the received signal strength indicator (RSSI) and the average of the link quality indicator (LQI) of the received packets. CRM is then used to generate a data set for training a supervised machine learning-based algorithm (which we call Normal Equation based Channel quality prediction (NEC) algorithm) in such a way that it may perform instantaneous channel rank estimation of any channel. Subsequently, two robust extensions of the NEC algorithm are proposed (which we call Normal Equation based Weighted Moving Average Channel quality prediction (NEWMAC) algorithm and Normal Equation based Aggregate Maturity Criteria with Beta Tracking based Channel weight prediction (NEAMCBTC) algorithm), that can perform channel quality estimation on the basis of both current and past values of channel rank estimation. In the end

  12. Investigation of Biogeochemical Functional Proxies in Headwater Streams Across a Range of Channel and Catchment Alterations

    NASA Astrophysics Data System (ADS)

    Berkowitz, Jacob F.; Summers, Elizabeth A.; Noble, Chris V.; White, John R.; DeLaune, Ronald D.

    2014-03-01

    Historically, headwater streams received limited protection and were subjected to extensive alteration from logging, farming, mining, and development activities. Despite these alterations, headwater streams provide essential ecological functions. This study examines proxy measures of biogeochemical function across a range of catchment alterations by tracking nutrient cycling (i.e., inputs, processing, and stream loading) with leaf litter fall, leaf litter decomposition, and water quality parameters. Nutrient input and processing remained highest in second growth forests (the least altered areas within the region), while recently altered locations transported higher loads of nutrients, sediments, and conductivity. Biogeochemical functional proxies of C and N input and processing significantly, positively correlated with rapid assessment results (Pearson coefficient = 0.67-0.81; P = 0.002-0.016). Additionally, stream loading equations demonstrate that N and P transport, sediment, and specific conductivity negatively correlated with rapid assessment scores (Pearson coefficient = 0.56-0.81; P = 0.002-0.048). The observed increase in stream loading with lower rapid assessment scores indicates that catchment alterations impact stream chemistry and that rapid assessments provide useful proxy measures of function in headwater ecosystems. Significant differences in nutrient processing, stream loading, water quality, and rapid assessment results were also observed between recently altered (e.g., mined) headwater streams and older forested catchments (Mann-Whitney U = 24; P = 0.01-0.024). Findings demonstrate that biogeochemical function is reduced in altered catchments, and rapid assessment scores respond to a combination of alteration type and recovery time. An analysis examining time and economic requirements of proxy measurements highlights the benefits of rapid assessment methods in evaluating biogeochemical functions.

  13. Impact of agricultural activities on anaerobic processes in stream sediments

    NASA Astrophysics Data System (ADS)

    Schade, J. D.; Ludwig, S.; Nelson, L. C.; Porterfield, J.; Sather, K. L.; Songpitak, M.; Spawn, S.; Weigel, B.

    2013-12-01

    Streams draining agriculture watersheds are subject to significant anthropogenic impacts, including sedimentation from soil erosion and high nitrate input from heavy fertilizer application. Sedimentation degrades habitat and can reduce hydrologic exchange between surface and subsurface waters. Disconnecting surface and subsurface flow reduces oxygen input to hyporheic water, increasing the extent of anoxic zones in stream sediments and creating hotspots for anaerobic processes like denitrification and methanogenesis that can be important sources of nitrous oxide and methane, both powerful greenhouse gases. Increased nitrate input may influence greenhouse gas fluxes from stream sediments by stimulating rates of denitrification and potentially reducing rates of methanogenesis, either through direct inhibition or by increasing competition for organic substrates from denitrifying bacteria. We hypothesized that accumulation of fine sediments in stream channels would result in high rates of methanogenesis in stream sediments, and that increased nitrate input from agricultural runoff would stimulate denitrification and reduce rates of methane production. Our work focused on streams in northern and central Minnesota, in particular on Rice Creek, a small stream draining an agricultural watershed. We used a variety of approaches to test our hypotheses, including surveys of methane concentrations in surface waters of streams ranging in sediment type and nitrate concentration, bottle incubations of sediment from several sites in Rice Creek, and the use of functional gene probes and RNA analyses to determine if genes for these processes are present and being expressed in stream sediments. We found higher methane concentrations in surface water from streams with large deposits of fine sediments, but significantly less methane in these streams when nitrate concentrations were high. We also found high potential for both methanogenesis and denitrification in sediment incubations

  14. Activation of TRPV1 channels inhibits mechanosensitive Piezo channel activity by depleting membrane phosphoinositides.

    PubMed

    Borbiro, Istvan; Badheka, Doreen; Rohacs, Tibor

    2015-02-10

    Capsaicin is an activator of the heat-sensitive TRPV1 (transient receptor potential vanilloid 1) ion channels and has been used as a local analgesic. We found that activation of TRPV1 channels with capsaicin either in dorsal root ganglion neurons or in a heterologous expression system inhibited the mechanosensitive Piezo1 and Piezo2 channels by depleting phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] and its precursor phosphatidylinositol 4-phosphate [PI(4)P] from the plasma membrane through Ca(2+)-induced phospholipase Cδ (PLCδ) activation. Experiments with chemically inducible phosphoinositide phosphatases and receptor-induced activation of PLCβ indicated that inhibition of Piezo channels required depletion of both PI(4)P and PI(4,5)P2. The mechanically activated current amplitudes decreased substantially in the excised inside-out configuration, where the membrane patch containing Piezo1 channels is removed from the cell. PI(4,5)P2 and PI(4)P applied to these excised patches inhibited this decrease. Thus, we concluded that Piezo channel activity requires the presence of phosphoinositides, and the combined depletion of PI(4,5)P2 and PI(4)P reduces channel activity. In addition to revealing a role for distinct membrane lipids in mechanosensitive ion channel regulation, these data suggest that inhibition of Piezo2 channels may contribute to the analgesic effect of capsaicin.

  15. Regionalized Equations for Bankfull Discharge and Channel Characteristics of Streams in New York State - Hydrologic Regions 1 and 2 in the Adirondack Region of Northern New York

    USGS Publications Warehouse

    Mulvihill, Christiane I.; Filopowicz, Amy; Coleman, Arthur; Baldigo, Barry P.

    2007-01-01

    Equations that relate drainage area to bankfull discharge and channel characteristics (width, depth, and cross-sectional area) at gaged sites are needed to define bankfull-discharge and channel characteristics at ungaged sites and to provide information for watershed assessments, stream-channel classification, and design of stream-restoration projects. Such equations are most accurate if derived from streams within an area of uniform hydrologic, climatic, and physiographic conditions and applied only within that region. Stream-survey and discharge data from 15 active (currently gaged in 2005) streamflow-gaging stations and 1 inactive (discontinued) streamflow-gaging station in hydrologic Regions 1 and 2 were used in linear-regression analyses to relate drainage area to bankfull discharge and bankfull-channel width, depth, and cross-sectional area. The four resulting equations are the following: 1) bankfull discharge (cubic feet per second) 2) bankfull-channel width (feet) 3) bankfull-channel depth (feet) 4) bankfull-channel cross-sectional area (square feet) The coefficients of determination (R2) for these four equations are 0.95, 0.89, 0.89, and 0.97, respectively. The high coefficients of determination for these equationsindicate that much variability is explained by drainage area. Recurrence intervals for the estimated bankfull discharge of each stream ranged from 1.01 to 3.80 years; the mean recurrence interval was 2.13 years. The 16 surveyed streams were classified by Rosgen stream type; most were B- and C-type, with a few E- and F-type cross sections. The hydrologic Regions 1 and 2 equation for the relation between bankfull discharge and drainage area was graphically compared to curves developed for 5 other hydrologic regions in New York State. The 95-percent confidence interval for the hydrologic Regions 1 and 2 curve fully encompassed the curves for Regions 4a, 5, and 6, showing that there are very few differences in the relation between drainage area and

  16. Channeling Children's Energy through Vocabulary Activities

    ERIC Educational Resources Information Center

    Schindler, Andrea

    2006-01-01

    In this article, the author shares vocabulary development activities for young learners. These activities channel students' energy and make learning more effective and fun. The author stresses the importance of giving young learners a good language-learning experience, and the challenges of teaching young learners who are not literate in their L1.…

  17. Language Development Activities through the Auditory Channel.

    ERIC Educational Resources Information Center

    Fitzmaurice, Peggy, Comp.; And Others

    Presented primarily for use with educable mentally retarded and learning disabled children are approximately 100 activities for language development through the auditory channel. Activities are grouped under the following three areas: receptive skills (auditory decoding, auditory memory, and auditory discrimination); expressive skills (auditory…

  18. Arroyo channel head evolution in a flash-flood-dominated discontinuous ephemeral stream system

    USGS Publications Warehouse

    DeLong, Stephen B.; Johnson, Joel P.L.; Whipple, Kelin X.

    2014-01-01

    We study whether arroyo channel head retreat in dryland discontinuous ephemeral streams is driven by surface runoff, seepage erosion, mass wasting, or some combination of these hydrogeomorphic processes. We monitored precipitation, overland flow, soil moisture, and headcut migration over several seasonal cycles at two adjacent rangeland channel heads in southern Arizona. Erosion occurred by headward retreat of vertical to overhanging faces, driven dominantly by surface runoff. No evidence exists for erosion caused by shallow-groundwater–related processes, even though similar theater-headed morphologies are sometimes attributed to seepage erosion by emerging groundwater. At our field site, vertical variation in soil shear strength influenced the persistence of the characteristic theater-head form. The dominant processes of erosion included removal of grains and soil aggregates during even very shallow (1–3 cm) overland flow events by runoff on vertical to overhanging channel headwalls, plunge-pool erosion during higher-discharge runoff events, immediate postrunoff wet mass wasting, and minor intra-event dry mass wasting on soil tension fractures developing subparallel to the headwall. Multiple stepwise linear regression indicates that the migration rate is most strongly correlated with flow duration and total precipitation and is poorly correlated with peak flow depth or time-integrated flow depth. The studied channel heads migrated upslope with a self-similar morphologic form under a wide range of hydrological conditions, and the most powerful flash floods were not always responsible for the largest changes in landscape form in this environment. 

  19. Self-adjustment of stream bed roughness and flow velocity in a steep mountain channel

    NASA Astrophysics Data System (ADS)

    Schneider, Johannes M.; Rickenmann, Dieter; Turowski, Jens M.; Kirchner, James W.

    2015-10-01

    Understanding how channel bed morphology affects flow conditions (and vice versa) is important for a wide range of fluvial processes and practical applications. We investigated interactions between bed roughness and flow velocity in a steep, glacier-fed mountain stream (Riedbach, Ct. Valais, Switzerland) with almost flume-like boundary conditions. Bed gradient increases along the 1 km study reach by roughly 1 order of magnitude (S = 3-41%), with a corresponding increase in streambed roughness, while flow discharge and width remain approximately constant due to the glacial runoff regime. Streambed roughness was characterized by semivariograms and standard deviations of point clouds derived from terrestrial laser scanning. Reach-averaged flow velocity was derived from dye tracer breakthrough curves measured by 10 fluorometers installed along the channel. Commonly used flow resistance approaches (Darcy-Weisbach equation and dimensionless hydraulic geometry) were used to relate the measured bulk velocity to bed characteristics. As a roughness measure, D84 yielded comparable results to more laborious measures derived from point clouds. Flow resistance behavior across this large range of steep slopes agreed with patterns established in previous studies for both lower-gradient and steep reaches, regardless of which roughness measures were used. We linked empirical critical shear stress approaches to the variable power equation for flow resistance to investigate the change of bed roughness with channel slope. The predicted increase in D84 with increasing channel slope was in good agreement with field observations.

  20. The jet-stream channels of gas and plasma in atmospheric-pressure plasma jets

    NASA Astrophysics Data System (ADS)

    Cho, Guangsup; Kim, Yunjung; Uhm, Han Sup

    2016-08-01

    A solution to the fluid momentum equation for incompressible steady-state flow is obtained for the streams of gas and plasma inside a jet nozzle and in the open-air space. Three pressure forces are considered in the equation. The first is the pressure force of the shear stress resulting from the flow viscosity and is balanced against the second pressure force of the gas stream that is ejected into the air. The third pressure force is due to the radial expansion of the fluid channel, reducing the velocity of the fluid to zero so that we obtain the reaching distance of the fluid after ejection from the nozzle. From the solution for the fluid channel, the regional profile and the density profile of the plasma flow are also determined. The maximum distance of the gas flow with a critical Reynolds number of R nc ≈ 2000 is calculated to be 100 times that of the nozzle diameter for Ar, Ne, and He. Because the radial expansion of the plasma is ten times larger than that of neutral gases, the length of the plasma flume is a few tens of the nozzle diameter, which is significantly shorter than the gas flow distance. In the experiments, the maximum length of the plasma plume increases and then saturates as the operation voltage increases.

  1. Effect of stream channel size on the delivery of nitrogen to the Gulf of Mexico

    USGS Publications Warehouse

    Alexander, R.B.; Smith, R.A.; Schwarz, G.E.

    2000-01-01

    An increase in the flux of nitrogen from the Mississippi river during the latter half of the twentieth century has caused eutrophication and chronic seasonal hypoxia in the shallow waters of the Louisiana shelf in the northern Gulf of Mexico. This has led to reductions in species diversity, mortality of benthic communities and stress in fishery resources. There is evidence for a predominantly anthropogenic origin of the increased nitrogen flux, but the location of the most significant sources in the Mississippi basin responsible for the delivery of nitrogen to the Gulf of Mexico have not been clearly identified, because the parameters influencing nitrogen-loss rates in rivers are not well known. Here we present an analysis of data from 374 US monitoring stations, including 123 along the six largest tributaries to the Mississippi, that shows a rapid decline in the average first-order rate of nitrogen loss with channel size-from 0.45 day-1 in small streams to 0.005 day-1 in the Mississippi river. Using stream depth as an explanatory variable, our estimates of nitrogen-loss rates agreed with values from earlier studies. We conclude that the proximity of sources to large streams and rivers is an important determinant of nitrogen delivery to the estuary in the Mississippi basin, and possibly also in other large river basins.

  2. Effect of stream channel size on the delivery of nitrogen to the Gulf of Mexico

    PubMed

    Alexander; Smith; Schwarz

    2000-02-17

    An increase in the flux of nitrogen from the Mississippi river during the latter half of the twentieth century has caused eutrophication and chronic seasonal hypoxia in the shallow waters of the Louisiana shelf in the northern Gulf of Mexico. This has led to reductions in species diversity, mortality of benthic communities and stress in fishery resources. There is evidence for a predominantly anthropogenic origin of the increased nitrogen flux, but the location of the most significant sources in the Mississippi basin responsible for the delivery of nitrogen to the Gulf of Mexico have not been clearly identified, because the parameters influencing nitrogen-loss rates in rivers are not well known. Here we present an analysis of data from 374 US monitor ing stations, including 123 along the six largest tributaries to the Mississippi, that shows a rapid decline in the average first-order rate of nitrogen loss with channel size--from 0.45 day (-1) in small streams to 0.005 day (-1) in the Mississippi river. Using stream depth as an explanatory variable, our estimates of nitrogen-loss rates agreed with values from earlier studies. We conclude that the proximity of sources to large streams and rivers is an important determinant of nitrogen delivery to the estuary in the Mississippi basin, and possibly also in other large river basins.

  3. Disentangling the responses of boreal stream assemblages to low stressor levels of diffuse pollution and altered channel morphology.

    PubMed

    Turunen, Jarno; Muotka, Timo; Vuori, Kari-Matti; Karjalainen, Satu Maaria; Rääpysjärvi, Jaana; Sutela, Tapio; Aroviita, Jukka

    2016-02-15

    Non-point diffuse pollution from land use and alteration of hydromorphology are among the most detrimental stressors to stream ecosystems. We explored the independent and interactive effects of morphological channel alteration (channelization for water transport of timber) and diffuse pollution on species richness and community structure of four organism groups in boreal streams: diatoms, macrophytes, macroinvertebrates, and fish. Furthermore, the effect of these stressors on stream condition was evaluated by Ecological Quality Ratios (EQR) from the national Water Framework Directive (WFD) assessment system. We grouped 91 study sites into four groups that were impacted by either diffuse pollution or hydromorphological alteration, by both stressors, or by neither one. Macroinvertebrate richness was reduced by diffuse pollution, whereas other biological groups were unaltered. Hydromorphological modification had no effect on taxon richness of any of the assemblages. Community structure of all groups was significantly affected by diffuse pollution but not by hydromorphology. Similarly, EQRs indicated negative response by diatoms, macroinvertebrates and fish to diffuse pollution, but not to hydromorphological alteration. Agricultural diffuse pollution thus affected species identities and abundances rather than taxonomic richness. Our results suggest that channelization of boreal streams for timber transport has not altered hydromorphological conditions sufficiently to have a strong impact on stream biota, whereas even moderate nutrient enrichment may be ecologically harmful. Controlling diffuse pollution and associated land use stressors should be prioritized over restoration of in-stream habitat structure to improve the ecological condition of boreal streams.

  4. Disentangling the responses of boreal stream assemblages to low stressor levels of diffuse pollution and altered channel morphology.

    PubMed

    Turunen, Jarno; Muotka, Timo; Vuori, Kari-Matti; Karjalainen, Satu Maaria; Rääpysjärvi, Jaana; Sutela, Tapio; Aroviita, Jukka

    2016-02-15

    Non-point diffuse pollution from land use and alteration of hydromorphology are among the most detrimental stressors to stream ecosystems. We explored the independent and interactive effects of morphological channel alteration (channelization for water transport of timber) and diffuse pollution on species richness and community structure of four organism groups in boreal streams: diatoms, macrophytes, macroinvertebrates, and fish. Furthermore, the effect of these stressors on stream condition was evaluated by Ecological Quality Ratios (EQR) from the national Water Framework Directive (WFD) assessment system. We grouped 91 study sites into four groups that were impacted by either diffuse pollution or hydromorphological alteration, by both stressors, or by neither one. Macroinvertebrate richness was reduced by diffuse pollution, whereas other biological groups were unaltered. Hydromorphological modification had no effect on taxon richness of any of the assemblages. Community structure of all groups was significantly affected by diffuse pollution but not by hydromorphology. Similarly, EQRs indicated negative response by diatoms, macroinvertebrates and fish to diffuse pollution, but not to hydromorphological alteration. Agricultural diffuse pollution thus affected species identities and abundances rather than taxonomic richness. Our results suggest that channelization of boreal streams for timber transport has not altered hydromorphological conditions sufficiently to have a strong impact on stream biota, whereas even moderate nutrient enrichment may be ecologically harmful. Controlling diffuse pollution and associated land use stressors should be prioritized over restoration of in-stream habitat structure to improve the ecological condition of boreal streams. PMID:26706766

  5. Hydric soils and the relationship to plant diversity within reclaimed stream channels in semi-arid environments

    SciTech Connect

    Schladweiler, B.K.; Rexroat, S.; Benson, S.

    1999-07-01

    Wetlands are especially important in semi-arid environments, such as the Powder River Basin of northeastern Wyoming, where water is a limiting factor for living organisms. Within this coal mining region of northeastern Wyoming, jurisdictional wetlands are mapped according to the US Army Corps of Engineers 1987 delineation procedure. Within the coal mining region of northeastern Wyoming, little or no full-scale mitigation or reconstruction attempts of jurisdictional wetland areas have been made until recently. Based on the importance of wetlands in a semi-arid environment and lack of information on existing or reconstructed areas, the specific objectives of the 1998 fieldwork were: (1) To define the pre-disturbance ecological state of hydric soils within jurisdictional sections of stream channels on two coal permit areas in northeastern Wyoming, and (2) To determine the effect that hydric soil parameters have on plant community distribution and composition within the two coal permit areas. Undisturbed sections of stream channels and disturbed sections of reconstructed or modified stream channels at the Rawhide Mine and Buckskin Mine, located north of Gillette, Wyoming, were selected for the study. Soils field and laboratory information and field vegetation cover were collected during 1998 within native stream channels and disturbed stream channels that had been reclaimed at each mine. Soils laboratory information is currently preliminary and included pH, electrical conductivity and sodium adsorption ratio. Results and statistical comparisons between soils and vegetation data will be presented.

  6. Equations for estimating bankfull channel geometry and discharge for streams in Massachusetts

    USGS Publications Warehouse

    Bent, Gardner C.; Waite, Andrew M.

    2013-01-01

    Regression equations were developed for estimating bankfull geometry—width, mean depth, cross-sectional area—and discharge for streams in Massachusetts. The equations provide water-resource and conservation managers with methods for estimating bankfull characteristics at specific stream sites in Massachusetts. This information can be used for the adminstration of the Commonwealth of Massachusetts Rivers Protection Act of 1996, which establishes a protected riverfront area extending from the mean annual high-water line corresponding to the elevation of bankfull discharge along each side of a perennial stream. Additionally, information on bankfull channel geometry and discharge are important to Federal, State, and local government agencies and private organizations involved in stream assessment and restoration projects. Regression equations are based on data from stream surveys at 33 sites (32 streamgages and 1 crest-stage gage operated by the U.S. Geological Survey) in and near Massachusetts. Drainage areas of the 33 sites ranged from 0.60 to 329 square miles (mi2). At 27 of the 33 sites, field data were collected and analyses were done to determine bankfull channel geometry and discharge as part of the present study. For 6 of the 33 sites, data on bankfull channel geometry and discharge were compiled from other studies done by the U.S. Geological Survey, Natural Resources Conservation Service of the U.S. Department of Agriculture, and the Vermont Department of Environmental Conservation. Similar techniques were used for field data collection and analysis for bankfull channel geometry and discharge at all 33 sites. Recurrence intervals of the bankfull discharge, which represent the frequency with which a stream fills its channel, averaged 1.53 years (median value 1.34 years) at the 33 sites. Simple regression equations were developed for bankfull width, mean depth, cross-sectional area, and discharge using drainage area, which is the most significant explanatory

  7. Landform assemblages and sedimentary processes along the Norwegian Channel Ice Stream

    NASA Astrophysics Data System (ADS)

    Ottesen, Dag; Stokes, Chris R.; Bøe, Reidulv; Rise, Leif; Longva, Oddvar; Thorsnes, Terje; Olesen, Odleiv; Bugge, Tom; Lepland, Aave; Hestvik, Ole B.

    2016-06-01

    Several regional and detailed bathymetric datasets together with 2D and 3D seismic data are compiled to investigate the landform assemblages and sedimentary processes along the former path of the Norwegian Channel Ice Stream (NCIS). At the broad scale, the glacial geomorphology and sedimentary architecture reveals three different zones along the ice-stream path, characterized by: (1) glacial erosion in the onset zone and inner shelf area, (2) sediment transport through the main trunk of the ice stream across the mid-shelf, and (3) a zone of deposition towards the outer continental shelf edge. Along the first 400 km of the ice stream bed (outer Oslofjord-Skagerrak-Stavanger) a major overdeepening is associated with suites of crag-and-tail features at the transition from the crystalline bedrock to the sedimentary bedrock, together with evidence of glaciotectonic thrusting in the form of hill-hole pairs. Here we interpret extensive erosion of both sedimentary rocks and Quaternary sediments. This zone is succeeded by an approximately 400 km long zone, through which most of the sediments eroded from the inner shelf were transported, rather than being deposited. We infer that sediment was transported subglacially and is likely to have been advected downstream by soft sediment deformation. The thickness of till of inferred Weichselian age generally varies from 0 and 50 m and this zone is characterized by mega-scale glacial lineations (MSGLs) which we interpret to be formed in a dynamic sedimentary system dominated by high sediment fluxes, but with some localized sediment accretion associated with lineations. Towards the shelf break, the North Sea Fan extends to the deep Norwegian Sea, and reflects massive sedimentation of glacigenic debris onto the continental slope. Numerous glacigenic debris flows accumulated and constructed a unit up to 400 m thick during the Last Glacial Maximum. The presence of these three zones (erosion, transport, deposition) is consistent with

  8. Relationship between channel morphology and foraging habitat for stream salmonids: Effects of body size

    NASA Astrophysics Data System (ADS)

    Cienciala, P.; Hassan, M. A.

    2014-12-01

    Channel morphology and dynamics strongly influence fish populations in running waters by defining habitat template for movement, spawning, incubation, and foraging. In this research we adopted a modeling approach to investigate how body size controls the relationship between salmonid fish and their foraging habitat in streams. Body size is a fundamental ecological parameter which affects resource acquisition, locomotory costs, metabolic rates, and competitive abilities. We focus on two specific questions. First, we examined how distinct types of channel morphology and associated flow fields shape specific growth potential for different body size classes of trout. Second, we modeled these fish-habitat relationships in a size-structured population in the presence of intraspecific competition. In the latter scenario, fish may not be able to occupy energetically optimal foraging habitat and the predicted specific growth potential may differ from the intrinsic habitat quality. To address the research questions, we linked a 2D hydrodynamic model with a bioenergetic foraging model for drift-feeding trout. Net energy intake, simulated for four study reaches with different channel morphology, was converted into maps of specific growth rate potential. We extended this model by including a component that enabled us to estimate territory size for fish of a given body size and account for the effects of competition on spatial distribution of fish. The predictions that emerge from our simulations highlight that fish body size is an important factor that determines the relationship between channel morphology and the quality of foraging habitat. The results also indicate that distinct types of channel morphology may give rise to different energetic conditions for different body size classes of drift-feeding salmonids.

  9. Interactions among forest age, valley and channel morphology, and log jams regulate animal production in mountain streams

    NASA Astrophysics Data System (ADS)

    Walters, D. M.; Venarsky, M. P.; Hall, R. O., Jr.; Herdrich, A.; Livers, B.; Winkelman, D.; Wohl, E.

    2014-12-01

    Forest age and local valley morphometry strongly influence the form and function of mountain streams in Colorado. Streams in valleys with old growth forest (>350 years) have extensive log jam complexes that create multi-thread channel reaches with extensive pool habitat and large depositional areas. Streams in younger unmanaged forests (e.g., 120 years old) and intensively managed forests have much fewer log jams and lower wood loads. These are single-thread streams dominated by riffles and with little depositional habitat. We hypothesized that log jam streams would retain more organic matter and have higher metabolism, leading to greater production of stream macroinvertebrates and trout. Log jam reaches should also have greater emergence of adult aquatic insects, and consequently have higher densities of riparian spiders taking advantage of these prey. Surficial organic matter was 3-fold higher in old-growth streams, and these streams had much higher ecosystem respiration. Insect production (g m2 y-1) was similar among forest types, but fish density was four times higher in old-growth streams with copious log jams. However, at the valley scale, insect production (g m-1 valley-1) and trout density (number m-1 valley-1) was 2-fold and 10-fold higher, respectively, in old growth streams. This finding is because multi-thread reaches created by log jams have much greater stream area and stream length per meter of valley than single-thread channels. The more limited response of macroinvertebrates may be related to fish predation. Trout in old growth streams had similar growth rates and higher fat content than fish in other streams in spite of occurring at higher densities and higher elevation/colder temperatures. This suggests that the positive fish effect observed in old growth streams is related to greater availability of invertebrate prey, which is consistent with our original hypothesis. Preliminary analyses suggest that spider densities do not respond strongly to

  10. The effect of inundation frequency on ground beetle communities in a channelized mountain stream

    NASA Astrophysics Data System (ADS)

    Skalski, T.; Kedzior, R.; Radecki-Pawlik, A.

    2012-04-01

    Under natural conditions, river channels and floodplains are shaped by flow and sediment regime and are one of the most dynamic ecosystems. At present, European river floodplains are among the most endangered landscapes due to human modifications to river systems, including channel regulation and floodplain urbanization, and land use changes in the catchments. Situated in a transition zone between terrestrial and aquatic environments, exposed riverine sediments (ERS) play a key role in the functioning of riverine ecosystems. This study aimed to verify whether the bare granular substrate is the only factor responsible for sustaining the biota associated with ERS or the inundation frequency also plays a role, modifying the potential of particular species to colonize these habitats. Ground beetles (Col. Carabidae) were selected as the investigated group of organisms and the study was carried out in Porębianka, a Polish Carpathian stream flowing through both unconstrained channel sections and sections with varied channelization schemes (rapid hydraulic structures, concrete revetments or rip-rap of various age). In each of the distinguished channel types, four replicates of 10 pitfall traps were established in three rows varying in distance to the mean water level (at three different benches). Almost 7000 individuals belonging to 102 species were collected on 60 plots. Forward selection of redundancy analysis revealed four factors significantly describing the variation in ground beetle species data: bank modification, potential bankfull discharge, frequency of inundation and plant height. Most of the biggest species were ordered at the positive site of first axis having the highest values of periods between floods. Total biomass of ground beetles and mean biomass of individuals differed significantly between sites of various frequency of inundation, whereas the variation in abundance and species richness of ground beetles was independent of the river dynamics. The body

  11. Elimination of edge effects in micro-thermal field-flow fractionation channel of low aspect ratio by splitting the carrier liquid flow into the main central stream and the thin stream layers at the side channel walls.

    PubMed

    Janca, Josef; Dupák, Jan

    2005-03-18

    An optimized construction of the separation channel for micro-thermal field-flow fractionation (FFF) was proposed and studied experimentally. The sample is injected in such a manner that its zone moves along the channel only in the main central stream where the flow velocity profile in the plane parallel to the main accumulation wall is practically flat. This central stream is separated from the contact with the side walls of the channel by thin flowing layers of the free carrier liquid. The retained species do not reach the thin liquid streams at the side walls where the flow rate decreases rapidly to achieve zero at the side wall according to the established 3D flow velocity profile. Such a construction of the channel allows one to reduce the aspect ratio (the ratio of the channel breadth b to its thickness w) without increasing the zone broadening. The hydrodynamic splitting of the outlet streams allows one not only to increase the concentration of the detected species but also the determination of the sign of Soret coefficient.

  12. Hydrogeomorphic adjustments of stream channels disturbed by urban runoff (Yzeron River basin, France)

    NASA Astrophysics Data System (ADS)

    Navratil, O.; Breil, P.; Schmitt, L.; Grosprêtre, L.; Albert, M. B.

    2013-04-01

    SummaryThis paper presents a field investigation on hydrogeomorphic adjustments of small streams in a 147 km2 periurban catchment, the Yzeron River catchment located in France. The rapid development of periurban areas in the world is now considered as one of the main factor impacting river systems. Urban disturbances are most of the time associated with irreversible alterations of the hydrological regime, the sediment yields, with major ecological impacts and additional socio-economical costs. Nineteen stream reaches have been considered in this study, with drainage areas ranging from 0.2 to 33.9 km2 and total impervious areas ranging from 1% to 52% of the basin surface. A regional analysis was led in order (i) to quantify the hydrogeomorphic adjustments of stream channels in this periurban context, i.e. the ratios between observed values and reference/rural values; and (ii) to identify the main anthropogenic controlling factors of these adjustments. Results show that urban river channels experience a global enlargement, with a mean bankfull discharge ratio of 1.8, bankfull width and depth ratios of 1.3 and a bankfull area ratio of 1.8. This study also outlines the global increase of hydrogeomorphic adjustments with the increase of the fraction of impervious area and the level of disturbance of the flood regime. However, local anthropogenic factors seem to be much more relevant to explain the highest adjustment ratios at several river reaches (enlargement ratio up to 55). The vicinity of a river reach with road sewers and/or the urban areas is identified to be a very important factor that affects significantly the smallest streams (drainage area less than 5 km2). On the contrary, at several reaches no significant deepening or widening was observed although roads/urban sewers and urban areas were identified in their catchment. Several hypotheses are proposed, but additional works with new data (river monitoring) would be needed to propose management and

  13. Quantifying the effects of stream channels on storm water quality in a semi-arid urban environment

    NASA Astrophysics Data System (ADS)

    Gallo, Erika L.; Lohse, Kathleen A.; Brooks, Paul D.; McIntosh, Jennifer C.; Meixner, Thomas; McLain, Jean E. T.

    2012-11-01

    SummaryStormwater drainage systems can have a large effect on urban runoff quality, but it is unclear how ephemeral urban streams alter runoff hydrochemistry. This problem is particularly relevant in semi-arid regions, where urban storm runoff is considered a renewable water resource. Here we address the question: how do stream channels alter urban runoff hydrochemistry? We collected synoptic stormwater samples during three rainfall-runoff events from nine ephemeral streams reaches (three concrete or metal, three grass, three gravel) in Tucson, Arizona. We identified patterns of temporal and spatial (longitudinal) variability in concentrations of conservative (chloride and isotopes of water) and reactive solutes (inorganic-N, soluble reactive phosphorous, sulfate-S, dissolved organic carbon (DOC) and nitrogen, and fecal indicator bacteria). Water isotopes and chloride (Cl) concentrations indicate that solute flushing and evapoconcentration alter temporal patterns in runoff hydrochemistry, but not spatial hydrochemical responses. Solute concentrations and stream channel solute sourcing and retention during runoff were significantly more variable at the grass reaches (CV = 2.3 - 144%) than at the concrete or metal (CV = 1.6 - 107%) or gravel reaches (CV = 1.9 - 60%), which functioned like flow-through systems. Stream channel soil Cl and DOC decreased following a runoff event (Cl: 12.1-7.3 μg g-1 soil; DOC: 87.7-30.1 μg g-1 soil), while soil fecal indicator bacteria counts increased (55-215 CFU g-1 soil). Finding from this study suggest that the characteristics of the ephemeral stream channel substrate control biogeochemical reactions between runoff events, which alter stream channel soil solute stores and the hydrochemistry of subsequent runoff events.

  14. Channel water balance and exchange with subsurface flow along a mountain headwater stream in Montana, United States

    USGS Publications Warehouse

    Payn, R.A.; Gooseff, M.N.; McGlynn, B.L.; Bencala, K.E.; Wondzell, S.M.

    2009-01-01

    Channel water balances of contiguous reaches along streams represent a poorly understood scale of stream-subsurface interaction. We measured reach water balances along a headwater stream in Montana, United States, during summer base flow recessions. Reach water balances were estimated from series of tracer tests in 13 consecutive reaches delineated evenly along a 2.6 km valley segment. For each reach, we estimated net change in discharge, gross hydrologic loss, and gross hydrologic gain from tracer dilution and mass recovery. Four series of tracer tests were performed during relatively high, intermediate, and low base flow conditions. The relative distribution of channel water along the stream was strongly related to a transition in valley structure, with a general increase in gross losses through the recession. During tracer tests at intermediate and low flows, there were frequent substantial losses of tracer mass (>10%) that could not be explained by net loss in flow over the reach, indicating that many of the study reaches were concurrently losing and gaining water. For example, one reach with little net change in discharge exchanged nearly 20% of upstream flow with gains and losses along the reach. These substantial bidirectional exchanges suggest that some channel interactions with subsurface flow paths were not measurable by net change in flow or transient storage of recovered tracer. Understanding bidirectional channel water balances in stream reaches along valleys is critical to an accurate assessment of stream solute fate and transport and to a full assessment of exchanges between the stream channel and surrounding subsurface. Copyright 2009 by the American Geophysical Union.

  15. Evaluating the use of drone photogrammetry for measurement of stream channel morphology and response to high flow events

    NASA Astrophysics Data System (ADS)

    Price, Katie; Ballow, William

    2015-04-01

    Traditional high-precision survey methods for stream channel measurement are labor-intensive and require wadeability or boat access to streams. These conditions limit the number of sites researchers are able to study and generally prohibit the possibility of repeat channel surveys to evaluate short-term fluctuations in channel morphology. In recent years, unmanned aerial vehicles (drones) equipped with photo and video capabilities have become widely available and affordable. Concurrently, developments in photogrammetric software offer unprecedented mapping and 3D rendering capabilities of drone-captured photography. In this study, we evaluate the potential use of drone-mounted cameras for detailed stream channel morphometric analysis. We used a relatively low-cost drone (DJI Phantom 2+ Vision) and commercially available, user friendly software (Agisoft Photscan) for photogrammetric analysis of drone-captured stream channel photography. Our test study was conducted on Proctor Creek, a highly responsive urban stream in Atlanta, Georgia, within the crystalline Piedmont region of the southeastern United States. As a baseline, we performed traditional high-precision survey methods to collect morphological measurements (e.g., bankfull and wetted width, bankfull and wetted thalweg depth) at 11 evenly-spaced transects, following USGS protocols along reaches of 20 times average channel width. We additionally used the drone to capture 200+ photos along the same reaches, concurrent with the channel survey. Using the photogrammetry software, we generated georeferenced 3D models of the stream channel, from which morphological measurements were derived from the 11 transects and compared with measurements from the traditional survey method. We additionally explored possibilities for novel morphometric characterization available from the continuous 3D surface, as an improvement on the limited number of detailed cross-sections available from standard methods. These results showed

  16. Baseline Channel Geometry and Aquatic Habitat Data for Selected Streams in the Matanuska-Susitna Valley, Alaska

    USGS Publications Warehouse

    Curran, Janet H.; Rice, William J.

    2009-01-01

    Small streams in the rapidly developing Matanuska-Susitna Valley in south-central Alaska are known to support anadromous and resident fish but little is known about their hydrologic and riparian conditions, or their sensitivity to the rapid development of the area or climate variability. To help address this need, channel geometry and aquatic habitat data were collected in 2005 as a baseline of stream conditions for selected streams. Three streams were selected as representative of various stream types, and one drainage network, the Big Lake drainage basin, was selected for a systematic assessment. Streams in the Big Lake basin were drawn in a Geographic Information System (GIS), and 55 reaches along 16 miles of Meadow Creek and its primary tributary Little Meadow Creek were identified from orthoimagery and field observations on the basis of distinctive physical and habitat parameters, most commonly gradient, substrate, and vegetation. Data-collection methods for sites at the three representative reaches and the 55 systematically studied reaches consisted of a field survey of channel and flood-plain geometry and collection of 14 habitat attributes using published protocols or slight modifications. Width/depth and entrenchment ratios along the Meadow-Little Meadow Creek corridor were large and highly variable upstream of Parks Highway and lower and more consistent downstream of Parks Highway. Channel width was strongly correlated with distance, increasing downstream in a log-linear relation. Runs formed the most common habitat type, and instream vegetation dominated the habitat cover types, which collectively covered 53 percent of the channel. Gravel suitable for spawning covered isolated areas along Meadow Creek and about 29 percent of Little Meadow Creek. Broad wetlands were common along both streams. For a comprehensive assessment of small streams in the Mat-Su Valley, critical additional data needs include hydrologic, geologic and geomorphic, and biologic data

  17. Regional Curves of Bankfull Channel Geometry for Non-Urban Streams in the Piedmont Physiographic Province, Virginia

    USGS Publications Warehouse

    Lotspeich, R. Russell

    2009-01-01

    Natural-channel design involves constructing a stream channel with the dimensions, slope, and plan-view pattern that would be expected to transport water and sediment and yet maintain habitat and aesthetics consistent with unimpaired stream segments, or reaches. Regression relations for bankfull stream characteristics based on drainage area, referred to as 'regional curves,' are used in natural stream channel design to verify field determinations of bankfull discharge and stream channel characteristics. One-variable, ordinary least-squares regressions relating bankfull discharge, bankfull cross-sectional area, bankfull width, bankfull mean depth, and bankfull slope to drainage area were developed on the basis of data collected at 17 streamflow-gaging stations in rural areas with less than 20 percent urban land cover within the basin area (non-urban areas) of the Piedmont Physiographic Province in Virginia. These regional curves can be used to estimate the bankfull discharge and bankfull channel geometry when the drainage area of a watershed is known. Data collected included bankfull cross-sectional geometry, flood-plain geometry, and longitudinal profile data. In addition, particle-size distributions of streambed material were determined, and data on basin characteristics were compiled for each reach. Field data were analyzed to determine bankfull cross-sectional area, bankfull width, bankfull mean depth, bankfull discharge, bankfull channel slope, and D50 and D84 particle sizes at each site. The bankfull geometry from the 17 sites surveyed during this study represents the average of two riffle cross sections for each site. Regional curves developed for the 17 sites had coefficient of determination (R2) values of 0.950 for bankfull cross-sectional area, 0.913 for bankfull width, 0.915 for bankfull mean depth, 0.949 for bankfull discharge, and 0.497 for bankfull channel slope. The regional curves represent conditions for streams with defined channels and bankfull

  18. Stage-discharge characteristics of a Weir in a sand-channel stream

    USGS Publications Warehouse

    Gonzalez, Don D.; Scott, C.H.; Culbertson, James K.

    1969-01-01

    A unique relation between water-surface elevation and water discharge usually does not exist for sand-channel streams. The relation is affected by changes in bed roughness and changes in bed elevation because of scour and fill. An artificial control on a sand-channel stream must control both the resistance to flow and the bed elevation in order to stabilize the relation between water-surface elevation and water discharge. The weir (control structure) in the Rio Grande conveyance channel near Bernardo, N. Mex., was designed on the basis of a model study and field data (Harris and Richardson, 1964). About 72 percent of the measurements used to define the base relation between water-surface elevation and water discharge falls within plus or minus 5 percent of the mean relation for the prototype. The stage-discharge relation is not affected by backwater for values of submergence less than 90 percent. There is no consistent relation between the ratio of measured discharge to rated discharge and submergence for values of submergence greater than 90 percent. The control does not restrict the channel capacity to less than the stated design capacity of 2,000 cubic feet per second. When the control is drowned out, or ineffective, the relation of water-surface elevation to water discharge is virtually the same as that prior to construction of the control for discharges greater than 1,500 cubic feet per second. When the control is not drowned out--that is, free-fall conditions exist--the water-surface elevation for a discharge of 2,000 cubic feet per second is greater than the minimum elevation, but is less than the maximum elevation that occurred at that discharge prior to construction. The model study was only partially successful in predicting the operating characteristics of the prototype. Some of the differences between prototype operation and model predictions may exist because the prototype was not built exactly as recommended on the basis of the model study. In general

  19. Targeting the Channel Activity of Viroporins.

    PubMed

    To, Janet; Surya, Wahyu; Torres, Jaume

    2016-01-01

    Since the discovery that certain small viral membrane proteins, collectively termed as viroporins, can permeabilize host cellular membranes and also behave as ion channels, attempts have been made to link this feature to specific biological roles. In parallel, most viroporins identified so far are virulence factors, and interest has focused toward the discovery of channel inhibitors that would have a therapeutic effect, or be used as research tools to understand the biological roles of viroporin ion channel activity. However, this paradigm is being shifted by the difficulties inherent to small viral membrane proteins, and by the realization that protein-protein interactions and other diverse roles in the virus life cycle may represent an equal, if not, more important target. Therefore, although targeting the channel activity of viroporins can probably be therapeutically useful in some cases, the focus may shift to their other functions in following years. Small-molecule inhibitors have been mostly developed against the influenza A M2 (IAV M2 or AM2). This is not surprising since AM2 is the best characterized viroporin to date, with a well-established biological role in viral pathogenesis combined the most extensive structural investigations conducted, and has emerged as a validated drug target. For other viroporins, these studies are still mostly in their infancy, and together with those for AM2, are the subject of the present review.

  20. Mapping Spatial Distributions of Stream Power and Channel Change along a Gravel-Bed River in Northern Yellowstone

    NASA Astrophysics Data System (ADS)

    Lea, D. M.; Legleiter, C. J.

    2014-12-01

    Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing. This study used remotely sensed data and field measurements to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to assess lateral channel mobility and develop a morphologic sediment budget for quantifying net sediment flux for a series of budget cells. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from LiDAR data were used to obtain the discharge and slope values, respectively, needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of channel mobility and sediment transfer. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volume of sediment eroded or deposited during each time increment. Our results indicated a lack of strong correlation between stream power gradients and sediment flux, which we attributed to the geomorphic complexity of the Soda Butte Creek watershed and the inability of our relatively simple statistical approach to link sediment dynamics expressed at a sub-budget cell scale to larger-scale driving forces such as stream power gradients. Future studies should compare the moderate spatial resolution techniques used in this study to very-high resolution data acquired from new fluvial remote sensing technologies to better understand the amount of error associated with stream power

  1. Process-Based Restoration and the Rise of the Stage Zero Channel As a Stream Restoration Goal

    NASA Astrophysics Data System (ADS)

    Pollock, M. M.

    2015-12-01

    The stage zero channel (sensu Cluer and Thorne 2013) is increasingly recognized as having intrinsic high value because of the multiple and synergistic ecosystem goods and services that such channels provide. Stage zero channels have well connected floodplains with elevated water tables, spatially variable hydrologic regimes and structurally complex aquatic and riparian habitat. As such, they provide incredibly valuable habitat for a suite of terrestrial and aquatic taxa, including several Pacific salmon species that are in decline. In this presentation, we provide an overview of the features and types of stage zero channels, where in the landscape they are likely to be found, how they evolve under natural conditions, and restoration techniques for converting less ecologically valuable channel types into stage zero channels. We compare the structure and function of stage zero channels to more traditional channel restoration targets. We conclude that new approaches to stream restoration are needed that take into account society's economic and ecological imperatives to create resilient, structurally complex and dynamic systems, and that the spatial scale of restorative actions should be expanded where possible to better recognize and integrate the interdependent nature of longitudinal, lateral and vertical linkages in stream systems.

  2. Turbulent flow in pipes and channels as cross-stream ``inverse cascades'' of vorticity

    NASA Astrophysics Data System (ADS)

    Eyink, Gregory L.

    2008-12-01

    A commonplace view of pressure-driven turbulence in pipes and channels is as "cascades" of streamwise momentum toward the viscous layer at the wall. We present in this paper an alternative picture of these flows as "inverse cascades" of spanwise vorticity in the cross-stream direction but away from the viscous sublayer. We show that there is a constant spatial flux of spanwise vorticity due to vorticity conservation and that this flux is necessary to produce pressure drop and energy dissipation. The vorticity transport is shown to be dominated by viscous diffusion at distances closer to the wall than the peak Reynolds stress, well into the classical log layer. The Perry-Chong model based on "representative" hairpin/horseshoe vortices predicts a single sign of the turbulent vorticity flux over the whole log layer, whereas the actual flux must change sign at the location of the Reynolds-stress maximum. Sign reversal may be achieved by assuming a slow power-law decay of the Townsend "eddy-intensity function" for wall-normal distances greater than the hairpin length scale. The vortex-cascade picture presented here has a close analog in the theory of quantum superfluids and superconductors, the "phase slippage" of quantized vortex lines. Most of our results should therefore apply as well to superfluid turbulence in pipes and channels. We also discuss issues about drag reduction from this perspective.

  3. Spreading of a ferrofluid core in three-stream micromixer channels

    NASA Astrophysics Data System (ADS)

    Wang, Zhaomeng; Varma, V. B.; Xia, Huan Ming; Wang, Z. P.; Ramanujan, R. V.

    2015-05-01

    Spreading of a water based ferrofluid core, cladded by a diamagnetic fluid, in three-stream micromixer channels was studied. This spreading, induced by an external magnetic field, is known as magnetofluidic spreading (MFS). MFS is useful for various novel applications where control of fluid-fluid interface is desired, such as micromixers or micro-chemical reactors. However, fundamental aspects of MFS are still unclear, and a model without correction factors is lacking. Hence, in this work, both experimental and numerical analyses were undertaken to study MFS. We show that MFS increased for higher applied magnetic fields, slower flow speed of both fluids, smaller flow rate of ferrofluid relative to cladding, and higher initial magnetic particle concentration. Spreading, mainly due to connective diffusion, was observed mostly near the channel walls. Our multi-physics model, which combines magnetic and fluidic analyses, showed, for the first time, excellent agreement between theory and experiment. These results can be useful for lab-on-a-chip devices.

  4. Spreading of a ferrofluid core in three-stream micromixer channels

    SciTech Connect

    Wang, Zhaomeng; Varma, V. B.; Ramanujan, R. V.; Xia, Huan Ming; Wang, Z. P.

    2015-05-15

    Spreading of a water based ferrofluid core, cladded by a diamagnetic fluid, in three-stream micromixer channels was studied. This spreading, induced by an external magnetic field, is known as magnetofluidic spreading (MFS). MFS is useful for various novel applications where control of fluid-fluid interface is desired, such as micromixers or micro-chemical reactors. However, fundamental aspects of MFS are still unclear, and a model without correction factors is lacking. Hence, in this work, both experimental and numerical analyses were undertaken to study MFS. We show that MFS increased for higher applied magnetic fields, slower flow speed of both fluids, smaller flow rate of ferrofluid relative to cladding, and higher initial magnetic particle concentration. Spreading, mainly due to connective diffusion, was observed mostly near the channel walls. Our multi-physics model, which combines magnetic and fluidic analyses, showed, for the first time, excellent agreement between theory and experiment. These results can be useful for lab-on-a-chip devices.

  5. Fabrication and validation of a multi-channel type microfluidic chip for electrokinetic streaming potential devices.

    PubMed

    Chun, Myung-Suk; Shim, Min Suk; Choi, Nak Won

    2006-02-01

    To elaborate on the applicability of the electrokinetic micro power generation, we designed and fabricated the silicon-glass as well as the PDMS-glass microfluidic chips with the unique features of a multi-channel. Besides miniaturizing the device, the key advantage of our microfluidic chip utilization lies in the reduction in water flow rate. Both a distributor and a collector taking the tapered duct geometry are positioned aiming the uniform distribution of water flow into all individual channels of the chip, in which several hundreds of single microchannels are assembled in parallel. A proper methodology is developed accompanying the deep reactive ion etching as well as the anodic bonding, and optimum process conditions necessary for hard and soft micromachining are presented. It has been shown experimentally and theoretically that the silicon-based microchannel leads to increasing streaming potential and higher external current compared to those of the PDMS-based one. A proper comparison between experimental results and theoretical computations allows justification of the validity of our novel devices. It is useful to recognize that a material inducing a higher magnitude of zeta potential has an advantage for obtaining higher power density under the same external resistance.

  6. The fan of influence of streams and channel feedbacks to simulated land surface water and carbon dynamics

    NASA Astrophysics Data System (ADS)

    Shen, Chaopeng; Riley, William J.; Smithgall, Kurt R.; Melack, John M.; Fang, Kuai

    2016-02-01

    Large-scale land models assume unidirectional land-to-river hydrological interactions, without considering feedbacks between channels and land. Using a tested, physically based model with explicit multiway interactions between overland, channel, wetland, and groundwater flows, we assessed how the representation and properties of channels influence simulated land surface hydrologic, biogeochemical, and ecosystem dynamics. A zone near the channels where various fluxes and states are significantly influenced by the channels, referred to as the fan of influence (FoI) of channels, has been identified. We elucidated two mechanisms inducing the model-derived FoI: the base flow mechanism, in which incised, gaining streams lower the water table and induce more base flow, and the relatively more efficient conveyance of the channel network compared to overland flow. We systematically varied drainage density and grid resolution to quantify the size of the FoI, which is found to span a large fraction of the watershed (25-50%) for hydrologic variables including depth to water table and recharge, etc. The FoI is more pronounced with low-resolution simulations but remains noticeable in hyperresolution (25 m) subbasin simulations. The FoI and the channel influence on basin-average fluxes are also similar in simulations with alternative parameter sets. We found that high-order, entrenched streams cause larger FoI. In addition, removing the simulated channels has disproportionally large influence on modeled wetland areas and inundation duration, which has implications for coupled biogeochemical or ecological modeling. Our results suggest that explicit channel representation provides important feedbacks to land surface dynamics which should be considered in meso or large-scale simulations. Since grid refinement incurs prohibitive computational cost, subgrid channel parameterization has advantages in efficiency over grid-based representations that do not distinguish between overland

  7. Early break-up of the Norwegian Channel Ice Stream during the Last Glacial Maximum

    NASA Astrophysics Data System (ADS)

    Svendsen, John Inge; Briner, Jason P.; Mangerud, Jan; Young, Nicolás E.

    2015-01-01

    We present 18 new cosmogenic 10Be exposure ages that constrain the breakup time of the Norwegian Channel Ice Stream (NCIS) and the initial retreat of the Scandinavian Ice Sheet from the Southwest coast of Norway following the Last Glacial Maximum (LGM). Seven samples from glacially transported erratics on the island Utsira, located in the path of the NCIS about 400 km up-flow from the LGM ice front position, yielded an average 10Be age of 22.0 ± 2.0 ka. The distribution of the ages is skewed with the 4 youngest all within the range 20.2-20.8 ka. We place most confidence on this cluster of ages to constrain the timing of ice sheet retreat as we suspect the 3 oldest ages have some inheritance from a previous ice free period. Three additional ages from the adjacent island Karmøy provided an average age of 20.9 ± 0.7 ka, further supporting the new timing of retreat for the NCIS. The 10Be ages from Utsira and Karmøy suggest that the ice stream broke up about 2000 years earlier than the age assignment based on 14C ages on foraminifera and molluscs from marine sediment cores. We postulate that the Scandinavian Ice Sheet flowed across the Norwegian Channel to Denmark and onto the North Sea plateau during early phases of the LGM. When the NCIS started to operate this ice supply to the North Sea was cut off and the fast flow of the NCIS also led to a lowering of the ice surface along the Norwegian Channel and thereby drawdown of the entire ice sheet. This facilitated rapid calving of the ice front in the North Sea and we reconstruct a large open bay across the entire northern North Sea by ˜20 ka based on our 10Be ages in the east and radiocarbon ages from marine cores in the west. Additional 10Be ages show that the mainland slightly east of the islands Utsira and Karmøy remained ice covered until about 16 ka, indicating almost no net ice-margin retreat for the 4000 years between 20 and 16 ka. After 16 ka the ice margin retreated quickly up-fjord.

  8. Stream channel surface water - groundwater interactions in a fire impacted watershed

    NASA Astrophysics Data System (ADS)

    Russo, T. A.; Fisher, A. T.

    2010-12-01

    We are conducting a study of surface water - groundwater interactions within the Scott Creek watershed, a 4th order catchment of 76.6 km2 in central coastal California, to assess the impacts of fire on channel and riparian conditions. Scott Creek and its tributaries are valuable spawning habitat for Coho salmon and Steelhead trout. The Scott Creek watershed is located on the western (windward) side of the Santa Cruz Mountains, where the most intense precipitation falls from November to April, and includes a mixture of protected land and areas used for agriculture, grazing, and selective timber harvesting. 37% of the watershed was burned in a fire in August 2009, and we hypothesize that this could result in enhanced delivery of fine grained hill slope sediments to stream channels for several years post fire, reducing the extent of hyporheic exchange downstream of burned areas. This could reduce the survival rates of Coho and Steelhead redds (egg nests), which are dependent on surface water - groundwater exchange for regulation of water nutrient content and temperature. We are monitoring streambed seepage rates and hydraulic conductivity, and performing repeated tracer discharge experiments at three sites on Scott Creek, two within and one upstream of the area burned in the 2009 fire. Streambed seepage rates are calculated using a time series method applied to heat as a tracer, using naturally occurring diurnal changes in stream temperature, and extended to calculations of streambed hydraulic conductivity based on measured head gradients. Hyporheic exchange parameters are assessed using tracer breakthrough data, as fit by an optimized model of one-dimensional advection, dispersion and transient storage. Variations in hydrologic characteristics (e.g., transient storage area, exchange coefficient) over time at each site are being used to assess the magnitude and timing of channel modifications independent to, and associated with, the burning of catchment hill slopes

  9. Synthetic modulators of TRP channel activity.

    PubMed

    Harteneck, Christian; Klose, Chihab; Krautwurst, Dietmar

    2011-01-01

    In humans, 27 TRP channels from 6 related families contribute to a broad spectrum of cellular functions, such as thermo-, pressure-, volume-, pain- and chemosensation. Pain and inflammation-inducing compounds represent potent plant and animal defense mechanisms explaining the great variety of the naturally occurring, TRPV1-, TRPM8-, and TRPA1-activating ligands. The discovery of the first vanilloid receptor (TRPV1) and its involvement in nociception triggered the euphoria and the hope in novel therapeutic strategies treating pain, and this clear-cut indication inspired the development of TRPV1-selective ligands. On the other hand the nescience in the physiological role and putative clinical indication hampered the development of a selective drug in the case of the other TRP channels. Therefore, currently only a handful of mostly un-selective blocker is available to target TRP channels. Nevertheless, there is an ongoing quest for new, natural or synthetic ligands and modulators. In this chapter, we will give an overview on available broad-range blocker, as well as first TRP channel-selective compounds. PMID:21290290

  10. Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone

    NASA Astrophysics Data System (ADS)

    Lea, Devin M.; Legleiter, Carl J.

    2016-01-01

    Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study sought to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8-km reach. Aerial photographs from 1994 to 2012 and ground-based surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and DEM developed from LiDAR data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Collectively, we refer to these methods as the stream power gradient (SPG) framework. The results of this study were compromised by methodological limitations of the SPG framework and revealed some complications likely to arise when applying this framework to small, wandering, gravel-bed rivers. Correlations between stream power gradients and sediment flux were generally weak, highlighting the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote

  11. AN INTERREGIONAL COMPARISON OF CHANNEL STRUCTURE WITH TRANSIENT STORAGE IN STREAMS DRAINING HARVESTED AND OLD-GROWTH WATERSHEDS

    EPA Science Inventory

    We compared measures of channel structure and riparian canopy with estimates of transient storage in 32 streams draining old-growth and harvested watersheds in the Southern Appalachian Mountains of North Carolina (n=4), the Ouachita Mountains of Arkansas (n=5), the Cascade Mounta...

  12. Natural-channel-design restorations that changed geomorphology have little effect on macroinvertebrate communities in headwater streams

    USGS Publications Warehouse

    Ernst, Anne G.; Warren, Dana R.; Baldigo, Barry P.

    2012-01-01

    Stream restorations that increase geomorphic stability can improve habitat quality, which should benefit selected species and local aquatic ecosystems. This assumption is often used to define primary restoration goals; yet, biological responses to restoration are rarely monitored or evaluated methodically. Macroinvertebrate communities were inventoried at 6 study reaches within 5 Catskill Mountain streams between 2002 and 2006 to characterize their responses to natural-channel-design (NCD) restoration. Although bank stability increased significantly at most restored reaches, analyses of variation showed that NCD restorations had no significant effect on 15 of 16 macroinvertebrate community metrics. Multidimensional scaling ordination indicated that communities from all reach types within a stream were much more similar to each other within any given year than they were in the same reaches across years or within any type of reach across streams. These findings indicate that source populations and watershed-scale factors were more important to macroinvertebrate community characteristics than were changes in channel geomorphology associated with NCD restoration. Furthermore, the response of macroinvertebrates to restoration cannot always be used to infer the response of other stream biota to restoration. Thus, a broad perspective is needed to characterize and evaluate the full range of effects that restoration can have on stream ecosystems.

  13. Channel change and sediment transport in two desert streams in central Arizona, 1991-92

    USGS Publications Warehouse

    Parker, J.T.

    1995-01-01

    recurrence interval of less than 5 years. A summer flow that lasted 3 hours had a peak discharge of 173 cubic meters per second and caused some bank erosion and possibly some dissection of terraces. The magnitude of change, however, was far less than that of the winter flow. Suspended-sediment concentration on the Salt River during the winter flows was typical of those for other regulated streams in Arizona and ranged from 2 to 617 milligrams per liter at discharges from 6.7 to 343 cubic meters per second. Fine-grained sediments in the channel bottom probably were the main source of sediment transported in suspension. During periods of prolonged, steady flows, suspended-sediment concentration tended to decline, which indicated a probable depletion of sediment supply. On the Hassayampa River, suspended-sediment concentrations ranged from 12,800 to 132,000 milligrams per liter at discharges of 13 to 128 cubic meters per second. The relation of sediment concentration to discharge was poor for the entire set of samples, but a clear pattern was evident for each period of storm runoff. In two of three periods of runoff sampled, maximum suspended-sediment concentration occurred just before peak discharge and declined rapidly.

  14. Epithelial sodium channel modulates platelet collagen activation.

    PubMed

    Cerecedo, Doris; Martínez-Vieyra, Ivette; Alonso-Rangel, Lea; Benítez-Cardoza, Claudia; Ortega, Arturo

    2014-03-01

    Activated platelets adhere to the exposed subendothelial extracellular matrix and undergo a rapid cytoskeletal rearrangement resulting in shape change and release of their intracellular dense and alpha granule contents to avoid hemorrhage. A central step in this process is the elevation of the intracellular Ca(2+) concentration through its release from intracellular stores and on throughout its influx from the extracellular space. The Epithelial sodium channel (ENaC) is a highly selective Na(+) channel involved in mechanosensation, nociception, fluid volume homeostasis, and control of arterial blood pressure. The present study describes the expression, distribution, and participation of ENaC in platelet migration and granule secretion using pharmacological inhibition with amiloride. Our biochemical and confocal analysis in suspended and adhered platelets suggests that ENaC is associated with Intermediate filaments (IF) and with Dystrophin-associated proteins (DAP) via α-syntrophin and β-dystroglycan. Migration assays, quantification of soluble P-selectin, and serotonin release suggest that ENaC is dispensable for migration and alpha and dense granule secretion, whereas Na(+) influx through this channel is fundamental for platelet collagen activation.

  15. Detecting the impact of bank and channel modification on invertebrate communities in Mediterranean temporary streams (Sardinia, SW Italy).

    PubMed

    Buffagni, Andrea; Tenchini, Roberta; Cazzola, Marcello; Erba, Stefania; Balestrini, Raffaella; Belfiore, Carlo; Pagnotta, Romano

    2016-09-15

    We hypothesized that reach-scale, bank and channel modification would impact benthic communities in temporary rivers of Sardinia, when pollution and water abstraction are not relevant. A range of variables were considered, which include both artificial structures/alterations and natural features observed in a stream reach. Multivariate regression trees (MRT) were used to assess the effects of the explanatory variables on invertebrate assemblages and five groups, characterized by different habitat modification and/or features, were recognized. Four node variables determined the splits in the MRT analysis: channel reinforcement, tree-related bank and channel habitats, channel modification and bank modification. Continuity of trees in the river corridor diverged among MRT groups and significant differences among groups include presence of alders, extent of channel shading and substrate diversity. Also, the percentage of in-stream organic substrates, in particular CPOM/Xylal, showed highly significant differences among groups. For practical applications, thresholds for the extent of channel reinforcement (40%) and modification (10%) and for bank alteration (≈30%) were provided, that can be used to guide the implementation of restoration measures. In moderately altered river reaches, a significant extent of tree-related habitats (≈5%) can noticeably mitigate the effects of morphological alteration on aquatic invertebrates. The outcomes highlight the importance of riparian zone management as an opportune, achievable prospect in the restoration of Mediterranean temporary streams. The impact of bank and channel modification on ecological status (sensu WFD) was investigated and the tested benthic metrics, especially those based on abundance data, showed legible differences among MRT groups. Finally, bank and channel modification appears to be a potential threat for the conservation of a few Sardo-Corsican endemic species. The introduction of management criteria that

  16. Detecting the impact of bank and channel modification on invertebrate communities in Mediterranean temporary streams (Sardinia, SW Italy).

    PubMed

    Buffagni, Andrea; Tenchini, Roberta; Cazzola, Marcello; Erba, Stefania; Balestrini, Raffaella; Belfiore, Carlo; Pagnotta, Romano

    2016-09-15

    We hypothesized that reach-scale, bank and channel modification would impact benthic communities in temporary rivers of Sardinia, when pollution and water abstraction are not relevant. A range of variables were considered, which include both artificial structures/alterations and natural features observed in a stream reach. Multivariate regression trees (MRT) were used to assess the effects of the explanatory variables on invertebrate assemblages and five groups, characterized by different habitat modification and/or features, were recognized. Four node variables determined the splits in the MRT analysis: channel reinforcement, tree-related bank and channel habitats, channel modification and bank modification. Continuity of trees in the river corridor diverged among MRT groups and significant differences among groups include presence of alders, extent of channel shading and substrate diversity. Also, the percentage of in-stream organic substrates, in particular CPOM/Xylal, showed highly significant differences among groups. For practical applications, thresholds for the extent of channel reinforcement (40%) and modification (10%) and for bank alteration (≈30%) were provided, that can be used to guide the implementation of restoration measures. In moderately altered river reaches, a significant extent of tree-related habitats (≈5%) can noticeably mitigate the effects of morphological alteration on aquatic invertebrates. The outcomes highlight the importance of riparian zone management as an opportune, achievable prospect in the restoration of Mediterranean temporary streams. The impact of bank and channel modification on ecological status (sensu WFD) was investigated and the tested benthic metrics, especially those based on abundance data, showed legible differences among MRT groups. Finally, bank and channel modification appears to be a potential threat for the conservation of a few Sardo-Corsican endemic species. The introduction of management criteria that

  17. Mapping spatial patterns of stream power and channel change along a gravel-bed river in northern Yellowstone

    NASA Astrophysics Data System (ADS)

    Lea, Devin M.

    Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing or field surveys. This study used remote sensing and GIS tools along with field data to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to develop a locational probability map and morphologic sediment budget to assess lateral channel mobility and changes in net sediment flux. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from light detection and ranging (LiDAR) data were used to obtain the discharge and slope values needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of sediment sources and sinks. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volumetric change in each time increment. Results indicated a lack of strong correlation between stream power gradients and sediment response, highlighting the geomorphic complexity of Soda Butte Creek and the inability of relatively simple statistical approaches to link sub-budget cell-scale sediment dynamics to larger-scale driving forces such as stream power gradients. Improving the moderate spatial resolution techniques used in this study and acquiring very-high resolution data from recently developed methods in fluvial remote sensing could help improve understanding of the spatial organization of stream power, sediment transport, and channel change in

  18. Calcium-Activated Potassium Channels: Potential Target for Cardiovascular Diseases.

    PubMed

    Dong, De-Li; Bai, Yun-Long; Cai, Ben-Zhi

    2016-01-01

    Ca(2+)-activated K(+) channels (KCa) are classified into three subtypes: big conductance (BKCa), intermediate conductance (IKCa), and small conductance (SKCa) KCa channels. The three types of KCa channels have distinct physiological or pathological functions in cardiovascular system. BKCa channels are mainly expressed in vascular smooth muscle cells (VSMCs) and inner mitochondrial membrane of cardiomyocytes, activation of BKCa channels in these locations results in vasodilation and cardioprotection against cardiac ischemia. IKCa channels are expressed in VSMCs, endothelial cells, and cardiac fibroblasts and involved in vascular smooth muscle proliferation, migration, vessel dilation, and cardiac fibrosis. SKCa channels are widely expressed in nervous and cardiovascular system, and activation of SKCa channels mainly contributes membrane hyperpolarization. In this chapter, we summarize the physiological and pathological roles of the three types of KCa channels in cardiovascular system and put forward the possibility of KCa channels as potential target for cardiovascular diseases.

  19. Analysis of Stream Channel Geometry Temporal and Spatial Evolution after Historic Dam Removal - two French case studies

    NASA Astrophysics Data System (ADS)

    Slawson, Deborah; Manière, Louis; Marchandeau, Florent

    2014-05-01

    IRSTEA, in partnership with the French Office national de l'eau et des milieux aquatiques (ONEMA), has begun a study of channel geomorphology in small streams where dams have been removed or breached between two and 200 years ago, without any subsequent restoration of the channel in the legacy sediments. A preliminary analysis of two sites in the Morvan, Burgundy, will be presented; a dam breached at the beginning of the 20th century and another in the last decade. Using ergodic reasoning, historical and recent upstream and downstream channel geometry is being used to predict the future temporal and spatial scales of channel physical habitat restoration. With the implementation of the European Water Framework Directive (WFD), dam removal has become a more frequently used method for restoring stream ecological continuity. In France, these obstacles are ubiquitous in medium and small streams and considerably reduce lateral and longitudinal connectivity. Improvement in the hydromorphologically controlled, physical habitat, particularly flow and sediment transport regimes, is often essential to improvement in stream biology. However, dam removal may cause long-term disturbances in flow and sediment transport regimes. In the absence of channel restoration measures in addition to dam removal, these disturbances may result in long-term negative impacts on fish, macroinvertebrate, and riparian plant physical habitat. These negative impacts may include channel incision and lowering of the water table, disconnection from floodplains, increased stream power and bed scouring, and increased sediment load from headcutting and bank erosion. Over time, these negative impacts may resolve themselves. However, the time frame necessary for reestablishing adequate physical habitat is not well-known. Some studies have indicated that many decades or longer may be required, depending on a variety of factors. Under the WFD, the REstoring rivers FOR effective catchment Management (REFORM

  20. Effects of variation in streamflow and channel structure on smallmouth bass habitat in an alluvial stream

    USGS Publications Warehouse

    Jason, Remshardt W.; Fisher, W.L.

    2009-01-01

    We evaluated the effects of streamflow-related changes in channel shape and morphology on the quality, quantity, availability and spatial distribution of young-of-year and adult smallmouth bass Micropterus dolomieu habitat in an alluvial stream, the Baron Fork of the Illinois River, Oklahoma. We developed Habitat Suitability Criteria (HSC) for young-of-year and adult smallmouth bass to assess changes in available smallmouth bass habitat between years, and compare predicted smallmouth bass Weighted Usable Area (WUA) with observed WUA measured the following year. Following flood events between 1999 and 2000, including a record flood, changes in transect cross-sectional area ranged from 62.5% to 93.5% and channel mesohabitat overlap ranged from 29.5% to 67.0% in study three study reaches. Using Physical HABitat SIMulation (PHABSIM) system analysis, we found that both young-of-year and adult smallmouth bass habitat were differentially affected by intra- and inter-annual streamflow fluctuations. Maximum WUA for young-of-year and adults occurred at streamflows of 1.8 and 2.3m3 s-1, respectively, and WUA declined sharply for both groups at lower streamflows. For most microhabitat variables, habitat availability was similar between years. Habitat suitability criteria developed in 1999 corresponded well with observed fish locations in 2000 for adult smallmouth bass but not for young-of-year fish. Our findings suggest that annual variation in habitat availability affects the predictive ability of habitat models for young-of-year smallmouth bass more than for adult smallmouth bass. Furthermore, our results showed that despite the dynamic nature of the gravel-dominated, alluvial Baron Fork, HSC for smallmouth bass were consistent and transferable between years.

  1. Channel Incision and Water-Table Decline Along a Recently Formed Proglacial Stream, Mendenhall Valley, Southeastern Alaska

    USGS Publications Warehouse

    Neal, Edward G.

    2009-01-01

    Retreat of the Mendenhall Glacier, in southeastern Alaska, resulted in the formation of Mendenhall Lake, which has reduced the supply of coarse sediment to the proglacial Mendenhall River. Channel geometry surveys conducted in 1969 and 1998 over a 5.3 km reach of the Mendenhall River revealed reductions in mean bed elevations ranging from 0.4 to 1.5 meters based on cross sections replicated at 7 locations. Channel incision in the Mendenhall River is believed to be the result of a combination of factors resulting from localized and region-wide glacial retreat. In addition to a reduction of river stage due to channel incision, a decline in water-table elevations of about 0.6 m during a 17-year period from 1984 to 2001 was identified in an observation well located 250 m from the incising stream channel. Water-table elevations 600 m from the incising channel in the adjacent alluvial outwash aquifer respond in phase to changes in river stage, indicating water-levels in the adjacent aquifer are declining in response to river-channel incision. This study suggests channel incision can rapidly lower water-table elevations for large distances in the adjacent aquifer, potentially modifying the hydrology to a degree capable of influencing adjacent surface-water features, such as off-channel wetlands and flood-plain side channels.

  2. The Formation of CIRs at Stream-Stream Interfaces and Resultant Geomagnetic Activity

    NASA Technical Reports Server (NTRS)

    Richardson, I. G.

    2005-01-01

    Corotating interaction regions (CIRs) are regions of compressed plasma formed at the leading edges of corotating high-speed solar wind streams originating in coronal holes as they interact with the preceding slow solar wind. Although particularly prominent features of the solar wind during the declining and minimum phases of the 11-year solar cycle, they may also be present at times of higher solar activity. We describe how CIRs are formed, and their geomagnetic effects, which principally result from brief southward interplanetary magnetic field excursions associated with Alfven waves. Seasonal and long-term variations in these effects are briefly discussed.

  3. Human-induced stream channel abandonment/capture and filling of floodplain channels within the Atchafalaya River Basin, Louisiana

    USGS Publications Warehouse

    Kroes, Daniel E.; Kraemer, Thomas F.

    2013-01-01

    The Atchafalaya River Basin is a distributary system of the Mississippi River containing the largest riparian area in the lower Mississippi River Valley and the largest remaining forested bottomland in North America. Reductions in the area of open water in the Atchafalaya have been occurring over the last 100 years, and many historical waterways are increasingly filled by sediment. This study examines two cases of swamp channels (3/s) that are filling and becoming unnavigable as a result of high sediment loads and slow water velocities. The water velocities in natural bayous are further reduced because of flow capture by channels constructed for access. Bathymetry, flow, suspended sediment, deposited bottom-material, isotopes, and photointerpretation were used to characterize the channel fill. On average, water flowing through these two channels lost 23% of the suspended sediment load in the studied reaches. Along one of the studied reaches, two constructed access channels diverted significant flow out of the primary channel and into the adjacent swamp. Immediately downstream of each of the two access channels, the cross-sectional area of the studied channel was reduced. Isotopic analyses of bottom-material cores indicate that bed filling has been rapid and occurred after detectable levels of Cesium-137 were no longer being deposited. Interpretation of aerial photography indicates that water is bypassing the primary channels in favor of the more hydraulically efficient access channels, resulting in low or no-velocity flow conditions in the primary channel. These swamp channel conditions are typical in the Atchafalaya River Basin where relict large channel dimensions result in flow velocities that are normally too low to carry fine-grained sediment. Constructed channels increase the rate of natural channel avulsion and abandonment as a result of flow capture.

  4. Stream channel cross sections for a reach of the Boise River in Ada County, Idaho

    USGS Publications Warehouse

    Hortness, Jon E.; Werner, Douglas C.

    1999-01-01

    The Federal Emergency Management Agency produces maps of areas that are likely to be inundated during major floods, usually the 100-year, or 1-percent probability, flood. The maps, called Flood Insurance Rate Maps, are used to determine flood insurance rates for homes, businesses, or other structures located in flood-prone areas. State and local governments also use these maps for help with, among other things, development planning and disaster mitigation. During the period October 1997 through December 1998, the initial phase of a hydraulic analysis project of the Boise River from Barber Dam to the Ada/Canyon County boundary, the U.S. Geological Survey collected stream channel cross-section data at 238 locations along the river and documented 108 elevation reference marks established for horizontal and vertical control. In the final phase of the project, the Survey will use these data to determine water-surface elevations for the 10-, 50-, 100-, and 500-year floods and to define floodway limits. The Federal Emergency Management Agency will use the results of this hydraulic analysis to update the 100- and 500-year flood boundaries and the floodway limits on their Flood Insurance Rate Maps.

  5. Effects of biologically-active chemical mixtures on fish in a wastewater-impacted urban stream.

    PubMed

    Barber, Larry B; Brown, Gregory K; Nettesheim, Todd G; Murphy, Elizabeth W; Bartell, Stephen E; Schoenfuss, Heiko L

    2011-10-15

    Stream flow in urban aquatic ecosystems often is maintained by water-reclamation plant (WRP) effluents that contain mixtures of natural and anthropogenic chemicals that persist through the treatment processes. In effluent-impacted streams, aquatic organisms such as fish are continuously exposed to biologically-active chemicals throughout their life cycles. The North Shore Channel of the Chicago River (Chicago, Illinois) is part of an urban ecosystem in which >80% of the annual flow consists of effluent from the North Side WRP. In this study, multiple samplings of the effluent and stream water were conducted and fish (largemouth bass and carp) were collected on 2 occasions from the North Shore Channel. Fish also were collected once from the Outer Chicago Harbor in Lake Michigan, a reference site not impacted by WRP discharges. Over 100 organic chemicals with differing behaviors and biological effects were measured, and 23 compounds were detected in all of the water samples analyzed. The most frequently detected and highest concentration (>100μg/L) compounds were ethylenediaminetetraacetic acid and 4-nonylphenolmono-to-tetraethoxycarboxylic acids. Other biologically-active chemicals including bisphenol A, 4-nonylphenol, 4-nonylphenolmono-to-tetraethoxylates, 4-tert-octylphenol, and 4-tert-octylphenolmono-to-tetraethoxylates were detected at lower concentrations (<5μg/L). The biogenic steroidal hormones 17β-estradiol, estrone, testosterone, 4-androstene-3,17-dione, and cis-androsterone were detected at even lower concentrations (<0.005μg/L). There were slight differences in concentrations between the North Side WRP effluent and the North Shore Channel, indicating minimal in-stream attenuation. Fish populations are continuously exposed to mixtures of biologically-active chemicals because of the relative persistency of the chemicals with respect to stream hydraulic residence time, and the lack of a fresh water source for dilution. The majority of male fish exhibited

  6. Effects of biologically-active chemical mixtures on fish in a wastewater-impacted urban stream

    USGS Publications Warehouse

    Barber, L.B.; Brown, G.K.; Nettesheim, T.G.; Murphy, E.W.; Bartell, S.E.; Schoenfuss, H.L.

    2011-01-01

    Stream flow in urban aquatic ecosystems often is maintained by water-reclamation plant (WRP) effluents that contain mixtures of natural and anthropogenic chemicals that persist through the treatment processes. In effluent-impacted streams, aquatic organisms such as fish are continuously exposed to biologically-active chemicals throughout their life cycles. The North Shore Channel of the Chicago River (Chicago, Illinois) is part of an urban ecosystem in which > 80% of the annual flow consists of effluent from the North Side WRP. In this study, multiple samplings of the effluent and stream water were conducted and fish (largemouth bass and carp) were collected on 2 occasions from the North Shore Channel. Fish also were collected once from the Outer Chicago Harbor in Lake Michigan, a reference site not impacted by WRP discharges. Over 100 organic chemicals with differing behaviors and biological effects were measured, and 23 compounds were detected in all of the water samples analyzed. The most frequently detected and highest concentration (> 100 ??g/L) compounds were ethylenediaminetetraacetic acid and 4-nonylphenolmono-to-tetraethoxycarboxylic acids. Other biologically-active chemicals including bisphenol A, 4-nonylphenol, 4-nonylphenolmono-to-tetraethoxylates, 4- tert-octylphenol, and 4- tert-octylphenolmono-to-tetraethoxylates were detected at lower concentrations (< 5 ??g/L). The biogenic steroidal hormones 17??-estradiol, estrone, testosterone, 4-androstene-3,17-dione, and cis-androsterone were detected at even lower concentrations (< 0.005 ??g/L). There were slight differences in concentrations between the North Side WRP effluent and the North Shore Channel, indicating minimal in-stream attenuation. Fish populations are continuously exposed to mixtures of biologically-active chemicals because of the relative persistency of the chemicals with respect to stream hydraulic residence time, and the lack of a fresh water source for dilution. The majority of male fish

  7. Larval salamanders and channel geomorphology are indicators of hydrologic permanence in forested headwater streams

    EPA Science Inventory

    Regulatory agencies need rapid indicators of hydrologic permanence for jurisdictional determinations of headwater streams. Our study objective was to assess the utility of larval salamander presence and assemblage structure and habitat variables for determining stream permanence ...

  8. Estimating 3D variation in active-layer thickness beneath arctic streams using ground-penetrating radar

    USGS Publications Warehouse

    Brosten, T.R.; Bradford, J.H.; McNamara, J.P.; Gooseff, M.N.; Zarnetske, J.P.; Bowden, W.B.; Johnston, M.E.

    2009-01-01

    We acquired three-dimensional (3D) ground-penetrating radar (GPR) data across three stream sites on the North Slope, AK, in August 2005, to investigate the dependence of thaw depth on channel morphology. Data were migrated with mean velocities derived from multi-offset GPR profiles collected across a stream section within each of the 3D survey areas. GPR data interpretations from the alluvial-lined stream site illustrate greater thaw depths beneath riffle and gravel bar features relative to neighboring pool features. The peat-lined stream sites indicate the opposite; greater thaw depths beneath pools and shallower thaw beneath the connecting runs. Results provide detailed 3D geometry of active-layer thaw depths that can support hydrological studies seeking to quantify transport and biogeochemical processes that occur within the hyporheic zone.

  9. Fast ventral stream neural activity enables rapid visual categorization.

    PubMed

    Cauchoix, Maxime; Crouzet, Sébastien M; Fize, Denis; Serre, Thomas

    2016-01-15

    Primates can recognize objects embedded in complex natural scenes in a glimpse. Rapid categorization paradigms have been extensively used to study our core perceptual abilities when the visual system is forced to operate under strong time constraints. However, the neural underpinning of rapid categorization remains to be understood, and the incredible speed of sight has yet to be reconciled with modern ventral stream cortical theories of object recognition. Here we recorded multichannel subdural electrocorticogram (ECoG) signals from intermediate areas (V4/PIT) of the ventral stream of the visual cortex while monkeys were actively engaged in a rapid animal/non-animal categorization task. A traditional event-related potential (ERP) analysis revealed short visual latencies (<50-70ms) followed by a rapidly developing visual selectivity (within ~20-30ms) for most electrodes. A multi-variate pattern analysis (MVPA) technique further confirmed that reliable animal/non-animal category information was possible from this initial ventral stream neural activity (within ~90-100ms). Furthermore, this early category-selective neural activity was (a) unaffected by the presentation of a backward (pattern) mask, (b) generalized to novel (unfamiliar) stimuli and (c) co-varied with behavioral responses (both accuracy and reaction times). Despite the strong prevalence of task-related information on the neural signal, task-irrelevant visual information could still be decoded independently of monkey behavior. Monkey behavioral responses were also found to correlate significantly with human behavioral responses for the same set of stimuli. Together, the present study establishes that rapid ventral stream neural activity induces a visually selective signal subsequently used to drive rapid visual categorization and that this visual strategy may be shared between human and non-human primates. PMID:26477655

  10. Ephemeral-Stream Channel and Basin-Floor Infiltration and Recharge in the Sierra Vista Subwatershed of the Upper San Pedro Basin, Southeastern Arizona

    USGS Publications Warehouse

    Coes, A.L.; Pool, D.R.

    2007-01-01

    The timing and location of streamflow in the San Pedro River are partially dependent on the aerial distribution of recharge in the Sierra Vista subwatershed. Previous investigators have assumed that recharge in the subwatershed occurs only along the mountain fronts by way of stream-channel infiltration near the contact between low-permeability rocks of the mountains and the basin fill. Recent studies in other alluvial basins of the Southwestern United States, however, have shown that significant recharge can occur through the sediments of ephemeral stream channels at locations several kilometers distant from the mountains. The purpose of this study was to characterize the spatial distribution of infiltration and subsequent recharge through the ephemeral channels in the Sierra Vista subwatershed. Infiltration fluxes in ephemeral channels and through the basin floor of the subwatershed were estimated by using several methods. Data collected during the drilling and coring of 16 boreholes included physical, thermal, and hydraulic properties of sediments; chloride concentrations of sediments; and pore-water stable-isotope values and tritium activity. Surface and subsurface sediment temperatures were continuously measured at each borehole. Twelve boreholes were drilled in five ephemeral stream channels to estimate infiltration within ephemeral channels. Active infiltration was verified to at least 20 meters at 11 of the 12 borehole sites on the basis of low sediment-chloride concentrations, high soil-water contents, and pore-water tritium activity similar to present-day precipitation. Consolidated sediments at the twelfth site prevented core recovery and estimation of infiltration. Analytical and numerical methods were applied to determine the surface infiltration flux required to produce the observed sediment-temperature fluctuations at six sites. Infiltration fluxes were determined for summer ephemeral flow events only because no winter flows were recorded at the sites

  11. The effect of macropores on bi-directional hydrologic exchange between a stream channel and riparian groundwater

    NASA Astrophysics Data System (ADS)

    Menichino, Garrett T.; Hester, Erich T.

    2015-10-01

    Macropores and soil pipes in stream banks are common geomorphic features. Macropores and soil pipes that are open to the channel (i.e. "bank face-connected" macropores) are inundated when channel stage is elevated (e.g., from precipitation, snowmelt, dam release). However, previous studies have not investigated macropore impact on bi-directional water exchange between the channel and bank/riparian groundwater under variable hydrologic conditions. We monitored two transects of riparian groundwater wells perpendicular to the bank of a 2nd order stream for a year: one with bank face-connected macropores (M transect) and one without bank face-connected macropores (NM transect). Fluctuations in water level and temperature during storms in those wells closest to the channel were on average 139% and 29% higher, respectively, in the presence of macropores. Rising head tests in the same wells indicated that hydraulic conductivity was 61-140 times higher in the presence of macropores. Bank storage, indicated by gradient reversals between channel and riparian zone, occurred on two temporal scales. Bank storage during storms was more frequent in the M transect (occurred all year) than in the NM transect (occurred just in winter and spring). Smaller magnitude gradient reversals at the M transect are consistent with faster head equilibration and greater exchange volume. Bank storage also occurred on an annual basis, with channel water entering storage during summer and fall and returning to the channel during winter and spring. Taken together, these results suggest that macropores act as preferential flow paths that enhance the connectivity between channels and riparian groundwater that influences bank storage. Where bank macropores are present, conceptual models of hyporheic and groundwater flow should account for their effects.

  12. Channel-reach morphology controls of headwater streams based in flysch geologic structures: An example from the Outer Western Carpathians, Czech Republic

    NASA Astrophysics Data System (ADS)

    Galia, Tomáš; Hradecký, Jan

    2014-07-01

    A detailed measurement of 93 channel reaches that were classified with an adjusted Montgomery-Buffington (1997) reach-scale system provided comprehensive information of approximately 9 at-a-reach parameters: the channel gradient, the bankfull width, the bankfull depth, d90, the percentage of resistant rocks in the bed sediment, the number of pieces of large woody debris, valley confinement, direct sediment inputs and the presence of fluvial accumulations in the stream channel. In addition, the quantified intensity of sediment transport (i.e. ratio between sediment supply and transport capacity in longitudinal stream profiles) during flood events has been estimated by the one-dimensional bedload transport model (TOMSED), which was validated in two local streams. The principal component analysis of the at-a-reach parameters did not reveal significant groups of channel-reach morphologies; thus, the selected parameters that exclude sediment transport dynamics within stream longitudinal profile cannot reliably distinguish or predict individual channel reach morphologies. Nevertheless, the channel gradient represented the most significant single explanatory variable for stepped-bed morphologies. The addition of bedload transport parameters demonstrated that limited sediment supply streams and streams with limited transport capacities featured different successions of the channel reach morphologies in terms of the channel gradient and, subsequently, the fluvial continuity. The bedrock-cascades and step-pools were significant for the first case, whereas cascade and step-rapid morphology often occurred in higher sediment supply conditions.

  13. Removal of Dental Biofilms with an Ultrasonically Activated Water Stream.

    PubMed

    Howlin, R P; Fabbri, S; Offin, D G; Symonds, N; Kiang, K S; Knee, R J; Yoganantham, D C; Webb, J S; Birkin, P R; Leighton, T G; Stoodley, P

    2015-09-01

    Acidogenic bacteria within dental plaque biofilms are the causative agents of caries. Consequently, maintenance of a healthy oral environment with efficient biofilm removal strategies is important to limit caries, as well as halt progression to gingivitis and periodontitis. Recently, a novel cleaning device has been described using an ultrasonically activated stream (UAS) to generate a cavitation cloud of bubbles in a freely flowing water stream that has demonstrated the capacity to be effective at biofilm removal. In this study, UAS was evaluated for its ability to remove biofilms of the cariogenic pathogen Streptococcus mutans UA159, as well as Actinomyces naeslundii ATCC 12104 and Streptococcus oralis ATCC 9811, grown on machine-etched glass slides to generate a reproducible complex surface and artificial teeth from a typodont training model. Biofilm removal was assessed both visually and microscopically using high-speed videography, confocal scanning laser microscopy (CSLM), and scanning electron microscopy (SEM). Analysis by CSLM demonstrated a statistically significant 99.9% removal of S. mutans biofilms exposed to the UAS for 10 s, relative to both untreated control biofilms and biofilms exposed to the water stream alone without ultrasonic activation (P < 0.05). The water stream alone showed no statistically significant difference in removal compared with the untreated control (P = 0.24). High-speed videography demonstrated a rapid rate (151 mm(2) in 1 s) of biofilm removal. The UAS was also highly effective at S. mutans, A. naeslundii, and S. oralis biofilm removal from machine-etched glass and S. mutans from typodont surfaces with complex topography. Consequently, UAS technology represents a potentially effective method for biofilm removal and improved oral hygiene.

  14. Diel changes in stream periphyton extracellular enzyme activity throughout community development on inert and organic substrates

    NASA Astrophysics Data System (ADS)

    Rier, S. T.; Francoeur, S. N.; Kuehn, K. A.

    2005-05-01

    We tested the hypothesis that algal photosynthesis in stream periphyton communities would influence the activities of extracellular enzymes produced by associated heterotrophic bacteria and fungi to acquire organic compounds and inorganic nutrients. We approached this question by looking for diurnal variation in activities of four extracellular enzymes in periphyton communities that were grown on either inert (glass fiber filters) or organic (leaves) substrata that there were incubated in stream-side channels that were either open to full sun or shaded. Substrata were subsampled for β-glucosidase, alkaline phosphotase, leucine-aminopeptidase, and phenol oxidase activities at 3-5 hr. intervals over two consecutive diurnal cycles that were repeated at an early and later stage of periphyton community development. Activities of all enzymes displayed diurnal periodicity but the strength of the diurnal effects depended largely on the substrate type and stage of community development. The most consistent diurnal change was observed with phenol oxidase activity with significantly greater (p<0.05) activities being observed in during the day for both stages of community development and for both substrate types. It is likely that oxygen produced by algal photosynthesis is driving the activity of this oxidative enzyme and that algae might indirectly influence the decomposition of phenolic compounds.

  15. Influences of high-flow events on a stream channel altered by construction of a highway bridge: a case study

    USGS Publications Warehouse

    Hedrick, Lara B.; Welsh, Stuart A.; Anderson, James T.

    2009-01-01

    Impacts of highway construction on streams in the central Appalachians are a growing concern as new roads are created to promote tourism and economic development in the area. Alterations to the streambed of a first-order stream, Sauerkraut Run, Hardy County, WV, during construction of a highway overpass included placement and removal of a temporary culvert, straightening and regrading of a section of stream channel, and armourment of a bank with a reinforced gravel berm. We surveyed longitudinal profiles and cross sections in a reference reach and the altered reach of Sauerkraut Run from 2003 through 2007 to measure physical changes in the streambed. During the four-year period, three high-flow events changed the streambed downstream of construction including channel widening and aggradation and then degradation of the streambed. Upstream of construction, at a reinforced gravel berm, bank erosion was documented. The reference section remained relatively unchanged. Knowledge gained by documenting channel changes in response to natural and anthropogenic variables can be useful for managers and engineers involved in highway construction projects.

  16. Channel morphology and patterns of bedload transport in fluvial, formerly-glaciated, forested headwater streams of the Columbia Mountains, Canada

    NASA Astrophysics Data System (ADS)

    Green, Kim; Brardinoni, Francesco; Alila, Younes

    2013-04-01

    This study examines channel-reach morphology and bedload transport dynamics in relation to landscape structure and snowmelt hydrology in Cotton and Elk Creek, two headwater streams of the southern Columbia Mountains, Canada. Data collection is based on field surveys and GIS analysis in conjunction with a nested monitoring network of water discharge and bed load transfer. The nested monitoring network is designed to examine the effects of channel bed texture, and the influence of free-formed (i.e., boulder cascades, step pools, and riffle pools) and forced-alluvial morphologies (i.e., forced step pools) on bedload entrainment and transport. The landscape is characterized by subdued glaciated topography in which sediment is primarily supplied by bank failures and fluvial transfer dominates the channelized sediment cascade. The spatial distribution of channel types is mainly controlled by glacially imposed local slope together with availability of wood and glacigenic materials. Interestingly, downstream hydraulic geometry as well as downstream patterns of the coarse channel bed fraction and stream power are all insensitive to systematic changes of local slope along the typically stepped longitudinal profiles. An indication that the study alluvial systems are adjusted to the contemporary hydrologic and sedimentary regimes, and as such through post-LGM times have been able to compensate for the glacially-imposed boundary conditions. Stepwise multiple regression indicates that annual bedload yield is chiefly controlled by the number of peak events over threshold discharge. During such high flows, repeated destabilization of channel bed armouring and re-mobilization of sediment stored behind logjams can ensure sediment supply for bedload transport across the entire snowmelt season. In particular, channel morphology affects distinctively the variability of bed load response to hydrologic forcing. The observed spatial variability in annual bedload yield appears to correlate

  17. Copper and protons directly activate the zinc-activated channel.

    PubMed

    Trattnig, Sarah M; Gasiorek, Agnes; Deeb, Tarek Z; Ortiz, Eydith J Comenencia; Moss, Stephen J; Jensen, Anders A; Davies, Paul A

    2016-03-01

    The zinc-activated channel (ZAC) is a cationic ion channel belonging to the superfamily of Cys-loop receptors, which consists of pentameric ligand-gated ion channels. ZAC is the least understood member of this family so in the present study we sought to characterize the properties of this channel further. We demonstrate that not only zinc (Zn(2+)) but also copper (Cu(2+)) and protons (H(+)) are agonists of ZAC, displaying potencies and efficacies in the rank orders of H(+)>Cu(2+)>Zn(2+) and H(+)>Zn(2+)>Cu(2+), respectively. The responses elicited by Zn(2+), Cu(2+) and H(+) through ZAC are all characterized by low degrees of desensitization. In contrast, currents evoked by high concentrations of the three agonists comprise distinctly different activation and decay components, with transitions to and from an open state being significantly faster for H(+) than for the two metal ions. The permeabilities of ZAC for Na(+) and K(+) relative to Cs(+) are indistinguishable, whereas replacing all of extracellular Na(+) and K(+) with the divalent cations Ca(2+) or Mg(2+) results in complete elimination of Zn(2+)-activated currents at both negative and positive holding potentials. This indicates that ZAC is non-selectively permeable to monovalent cations, whereas Ca(2+) and Mg(2+) inhibit the channel. In conclusion, this is the first report of a Cys-loop receptor being gated by Zn(2+), Cu(2+) and H(+). ZAC could be an important mediator of some of the wide range of physiological functions regulated by or involving Zn(2+), Cu(2+) and H(+).

  18. Beaver Activity, Holocene Climate and Riparian Landscape Change Across Stream Scales in the Greater Yellowstone Ecosystem

    NASA Astrophysics Data System (ADS)

    Levine, R.; Meyer, G. A.

    2013-12-01

    Beaver (Castor canadensis) have been part of the fluvial and riparian landscape across much of North America since the Pleistocene, increasing channel habitat complexity and expanding riparian landscapes. The fur trade, however, decimated beaver populations by the 1840s, and other human activities have limited beaver in many areas, including parts of the Greater Yellowstone Ecosystem (GYE). Understanding fluctuations in beaver occupation through the Holocene will aid in understanding the natural range of variability in beaver activity as well as climatic and anthropogenic impacts to fluvial systems. We are developing a detailed chronology of beaver-assisted sedimentation and overall fluvial activity for Odell and Red Rock Creeks (basin areas 83 and 99 km2) in Centennial Valley (CV), Montana, to augment related studies on the long-term effects of beaver on smaller GYE fluvial systems (basin areas 0.1-50 km2). In developing the CV chronology, we use the presence of concentrations of beaver-chewed sticks as a proxy for beaver occupancy. Beaver-stick deposits are found in paleochannel and fluvial terrace exposures. The relative ages of exposures were determined by elevation data from airborne LiDAR and ground surveys. Numerical ages were obtained from 36 14C ages (~30 more are pending) of beaver-stick wood collected during investigation of the stratigraphy. Most beaver-stick deposits are associated with ~ 1 meter of fine-grained sediment, interpreted as overbank deposits, commonly overlying gravelly sand or pebble gravel channel deposits which is consistent with enhanced overbank sedimentation associated with active beaver dams in CV streams. The CV deposits differ from those on smaller GYE streams where beaver-stick deposits are associated with abandoned dams (berms), infilled ponds and laminated sediments. The lack of pond-related deposition associated with CV beaver-stick deposits is consistent with frequent dam breaching (≤ 5 years) in the modern channel of Odell

  19. Ion channels activated by light in Limulus ventral photoreceptors

    PubMed Central

    1986-01-01

    The light-activated conductance of Limulus ventral photoreceptors was studied using the patch-clamp technique. Channels (40 pS) were observed whose probability of opening was greatly increased by light. In some cells the latency of channel activation was nearly the same as that of the macroscopic response, while in other cells the channel latency was much greater. Like the macroscopic conductance, channel activity was reduced by light adaptation but enhanced by the intracellular injection of the calcium chelator EGTA. The latter observation indicates that channel activation was not a secondary result of the light-induced rise in intracellular calcium. A two-microelectrode voltage-clamp method was used to measure the voltage dependence of the light-activated macroscopic conductance. It was found that this conductance is constant over a wide voltage range more negative than zero, but it increases markedly at positive voltages. The single channel currents measured over this same voltage range show that the single channel conductance is independent of voltage, but that channel gating properties are dependent on voltage. Both the mean channel open time and the opening rate increase at positive voltages. These properties change in a manner consistent with the voltage dependence of the macroscopic conductance. The broad range of similarities between the macroscopic and single channel currents supports the conclusion that the 40-pS channel that we have observed is the principal channel underlying the response to light in these photoreceptors. PMID:2419481

  20. Using stream sediment lithology to explore the roles of abrasion and channel network structure in shaping downstream sediment yields

    NASA Astrophysics Data System (ADS)

    Mueller, E. R.; Smith, M. E.; Pitlick, J.

    2012-12-01

    Both the flux and characteristics of stream sediment evolve downstream in response to variations in sediment supply, abrasion rate, and channel network structure. We use a simple erosion-abrasion mass balance to model the downstream evolution of sediment flux in two adjacent watersheds draining differing mixtures of soft and resistant rock types in the northern Rocky Mountains. Measurements of bed sediment grain size and lithology are used in conjunction with measured bed load and suspended load sediment fluxes to constrain the model. The results show that the downstream evolution in bed load flux and composition can be strongly influenced by subtle differences in underlying geology, which shapes both the abrasion characteristics and travel path lengths of individual rock types. In the Big Wood basin, abrasion rapidly reduces the size of soft sedimentary and volcanic rocks exposed in headwater areas, concentrating resistant granitic rocks in the stream bed and depressing bed load in favor of suspended load. Alternatively, in the North Fork Big Lost basin, volcanic and sedimentary lithologies are exposed throughout the catchment, and the bed material becomes dominated by erodible but resistant quartzitic sandstones. The result is a much higher bed load flux best modeled with modest abrasion rates. In both cases, the best-fit model can reproduce within 5% the composition of the stream bed substrate using realistic erosion and abrasion parameters. The results also demonstrate a strong linkage between modern hillslopes and channel systems even in these formerly glaciated landscapes, as the sediment signature of the primary streams reflects the systematic tapping of distinct source areas. While this work shows promise, measurement of the spatial patterns in the size and composition of bed and suspended load fluxes at locations throughout a channel network would better elucidate that relative importance of supply, sorting, and abrasion processes.

  1. Annual and seasonal differences in pesticide mixtures within channelized agricultural headwater streams in central Ohio

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Only a limited amount of information on pesticide mixtures within agricultural headwater streams is available. A greater understanding of the characteristics of pesticide mixtures and their spatial and temporal trends within agricultural headwater streams is needed to evaluate the risks of pesticid...

  2. Complex channel responses to changes in stream flow and sediment supply on the lower Duchesne River, Utah

    USGS Publications Warehouse

    Gaeuman, D.; Schmidt, J.C.; Wilcock, P.R.

    2005-01-01

    Channel responses to flow depletions in the lower Duchesne River over the past 100 years have been highly complex and variable in space and time. In general, sand-bed reaches adjusted to all perturbations with bed-level changes, whereas the gravel-bed reaches adjusted primarily through width changes. Gravel-bed reaches aggraded only when gravel was supplied to the channel through local bank erosion and degraded only during extreme flood events. A 50% reduction in stream flow and an increase in fine sediment supply to the study area occurred in the first third of the 20th century. The gravel-bed reach responded primarily with channel narrowing, whereas bed aggradation and four large-scale avulsions occurred in the sand-bed reaches. These avulsions almost completely replaced a section of sinuous channel about 14 km long with a straighter section about 7 km long. The most upstream avulsion, located near a break in valley slope and the transition from a gravel bed upstream and a sand bed downstream, transformed a sinuous sand-bed reach into a braided gravel-bed reach and eventually into a meandering gravel-bed reach over a 30-year period. Later, an increase in flood magnitudes and durations caused widening and secondary bed aggradation in the gravel-bed reaches, whereas the sand-bed reaches incised and narrowed. Water diversions since the 1950s have progressively eliminated moderate flood events, whereas larger floods have been less affected. The loss of frequent flooding has increased the duration and severity of drought periods during which riparian vegetation can establish along the channel margins. As a result, the channel has gradually narrowed throughout the study area since the late 1960s, despite the occasional occurrence of large floods. No tributaries enter the Duchesne River within the study area, so all reaches have experienced identical changes in stream flow and upstream sediment supply. ?? 2004 Elsevier B.V. All rights reserved.

  3. Investigating neuronal activity by SPYCODE multi-channel data analyzer.

    PubMed

    Bologna, Luca Leonardo; Pasquale, Valentina; Garofalo, Matteo; Gandolfo, Mauro; Baljon, Pieter Laurens; Maccione, Alessandro; Martinoia, Sergio; Chiappalone, Michela

    2010-08-01

    Multi-channel acquisition from neuronal networks, either in vivo or in vitro, is becoming a standard in modern neuroscience in order to infer how cell assemblies communicate. In spite of the large diffusion of micro-electrode-array-based systems, researchers usually find it difficult to manage the huge quantity of data routinely recorded during the experimental sessions. In fact, many of the available open-source toolboxes still lack two fundamental requirements for treating multi-channel recordings: (i) a rich repertoire of algorithms for extracting information both at a single channel and at the whole network level; (ii) the capability of autonomously repeating the same set of computational operations to 'multiple' recording streams (also from different experiments) and without a manual intervention. The software package we are proposing, named SPYCODE, was mainly developed to respond to the above constraints and generally to offer the scientific community a 'smart' tool for multi-channel data processing. PMID:20554151

  4. Human impacts to mountain streams

    NASA Astrophysics Data System (ADS)

    Wohl, Ellen

    2006-09-01

    Mountain streams are here defined as channel networks within mountainous regions of the world. This definition encompasses tremendous diversity of physical and biological conditions, as well as history of land use. Human effects on mountain streams may result from activities undertaken within the stream channel that directly alter channel geometry, the dynamics of water and sediment movement, contaminants in the stream, or aquatic and riparian communities. Examples include channelization, construction of grade-control structures or check dams, removal of beavers, and placer mining. Human effects can also result from activities within the watershed that indirectly affect streams by altering the movement of water, sediment, and contaminants into the channel. Deforestation, cropping, grazing, land drainage, and urbanization are among the land uses that indirectly alter stream processes. An overview of the relative intensity of human impacts to mountain streams is provided by a table summarizing human effects on each of the major mountainous regions with respect to five categories: flow regulation, biotic integrity, water pollution, channel alteration, and land use. This table indicates that very few mountains have streams not at least moderately affected by land use. The least affected mountainous regions are those at very high or very low latitudes, although our scientific ignorance of conditions in low-latitude mountains in particular means that streams in these mountains might be more altered than is widely recognized. Four case studies from northern Sweden (arctic region), Colorado Front Range (semiarid temperate region), Swiss Alps (humid temperate region), and Papua New Guinea (humid tropics) are also used to explore in detail the history and effects on rivers of human activities in mountainous regions. The overview and case studies indicate that mountain streams must be managed with particular attention to upstream/downstream connections, hillslope/channel

  5. Groundwater-derived contaminant fluxes along a channelized Coastal Plain stream

    SciTech Connect

    LaSage, Danita m; Fryar, Alan E; Mukherjee, Abhijit; Sturchio, Neil C; Heraty, Linnea J

    2008-10-01

    Recent studies in various settings across eastern North America have examined the movement of volatile organic compound (VOC) plumes from groundwater to streams, but few studies have addressed focused discharge of such plumes in unlithified sediments. From 1999 through 2002, we monitored concentrations of trichloroethene (TCE) and the non-volatile co-contaminant technetium-99 along Little Bayou Creek, a first -order perennial stream in the Coastal Plain of western Kentucky. Spring flow contributed TCE and technetium-99 to the creek, and TCE concentrations tended to vary with technetium-99 in springs. Contaminant concentrations in stream water fluctuated seasonally, but not always synchronously with stream flow. However, contaminant influxes varied seasonally with stream flow and were dominated by a few springs. Concentrations of O2, NO3⁻, and SO2-4, values of δ37CL in groundwater, and the lack of less-chlorinated ethenes in groundwater and stream water indicated that aerobic biodegradation of TCE was unlikely. Losses of TCE along Little Bayou Creek resulted mainly from volatilization, in contrast to streams receiving diffuse contaminated discharge, where intrinsic bioremediation of VOCs appears to be prevalent.

  6. Cumulative Activation of Voltage-Dependent KVS-1 Potassium Channels

    PubMed Central

    Rojas, Patricio; Garst-Orozco, Jonathan; Baban, Beravan; de Santiago-Castillo, Jose Antonio; Covarrubias, Manuel; Salkoff, Lawrence

    2008-01-01

    In this study, we reveal the existence of a novel use-dependent phenomenon in potassium channels, which we refer to as cumulative activation (CA). CA consists of an increase in current amplitude in response to repetitive depolarizing step pulses to the same potential. CA persists for up to 20 s and is similar to a phenomenon called “voltage-dependent facilitation” observed in some calcium channels. The KVS-1 K+ channel, which exhibits CA, is a rapidly activating and inactivating voltage-dependent potassium channel expressed in chemosensory and other neurons of Caenorhabditis elegans. It is unusual in being most closely related to the Shab (Kv2) family of potassium channels, which typically behave like delayed rectifier K+ channels in other species. The magnitude of CA depends on the frequency, voltage, and duration of the depolarizing step pulse. CA also radically changes the activation and inactivation kinetics of the channel, suggesting that the channel may undergo a physical modification in a use-dependent manner; thus, a model that closely simulates the behavior of the channel postulates the existence of two populations of channels, unmodified and modified. Use-dependent changes in the behavior of potassium channels, such as CA observed in KVS-1, could be involved in functional mechanisms of cellular plasticity such as synaptic depression that represent the cellular basis of learning and memory. PMID:18199775

  7. Quantifying the sensitivity of ephemeral streams to land disturbance activities in arid ecosystems at the watershed scale.

    PubMed

    O'Connor, Ben L; Hamada, Yuki; Bowen, Esther E; Grippo, Mark A; Hartmann, Heidi M; Patton, Terri L; Van Lonkhuyzen, Robert A; Carr, Adrianne E

    2014-11-01

    Large areas of public lands administered by the Bureau of Land Management and located in arid regions of the southwestern United States are being considered for the development of utility-scale solar energy facilities. Land-disturbing activities in these desert, alluvium-filled valleys have the potential to adversely affect the hydrologic and ecologic functions of ephemeral streams. Regulation and management of ephemeral streams typically falls under a spectrum of federal, state, and local programs, but scientifically based guidelines for protecting ephemeral streams with respect to land-development activities are largely nonexistent. This study developed an assessment approach for quantifying the sensitivity to land disturbance of ephemeral stream reaches located in proposed solar energy zones (SEZs). The ephemeral stream assessment approach used publicly-available geospatial data on hydrology, topography, surficial geology, and soil characteristics, as well as high-resolution aerial imagery. These datasets were used to inform a professional judgment-based score index of potential land disturbance impacts on selected critical functions of ephemeral streams, including flow and sediment conveyance, ecological habitat value, and groundwater recharge. The total sensitivity scores (sum of scores for the critical stream functions of flow and sediment conveyance, ecological habitats, and groundwater recharge) were used to identify highly sensitive stream reaches to inform decisions on developable areas in SEZs. Total sensitivity scores typically reflected the scores of the individual stream functions; some exceptions pertain to groundwater recharge and ecological habitats. The primary limitations of this assessment approach were the lack of high-resolution identification of ephemeral stream channels in the existing National Hydrography Dataset, and the lack of mechanistic processes describing potential impacts on ephemeral stream functions at the watershed scale. The

  8. Riparian-vegetation controls on the spatial pattern of stream-channel instability, Little Piney Creek, Missouri

    USGS Publications Warehouse

    Jacobson, Robert B.; Pugh, Aaron L.

    1998-01-01

    The role of riparian vegetation is assessed quantitatively by using a five-decade record of valley bottom vegetation and channel dynamics developed from historical aerial photography. A 12-kilometer reach of a typical Ozarks stream was mapped using aerial photographs from 1938, 1948, 1955, 1965, 1976, and 1989; maps were then analyzed in a digital geographic information system. Analysis of sequential pairs of maps provides transition frequencies for assessing the relative areal rates at which riparian woodland, grassland, and cropland have been eroded or subjected to gravel aggradation. Results indicate that cropland and grassland have been no more likely to erode than woodland; cropland and grassland are slightly more susceptible to gravel deposition than woodland. These findings underscore the potential for complex responses of streams to a cumulative history of riparian and drainage-basin disturbances.

  9. Metal contamination of active stream sediments in upper Weardale, northern Pennine Orefield, UK.

    PubMed

    Lord, R A; Morgan, P A

    2003-03-01

    In the Upper Weardale area the headwaters of the River Wear bisect the Northern Pennine Orefield, where Pb-Zn-F-Ba vein-type mineralisation has been exploited since the Roman Conquest. The area contains evidence of open pit, underground and hydraulic mining of base metal ores, associated mineral processing and smelting, exploitation of ironstones during the industrial revolution, recent extraction of fluorite and active quarrying. The aim of this study was to determine the extent of modern sediment contamination arising from these past activities. Samples of active stream sediments were collected from all major drainage channels at 1 km intervals. The sediments were analysed for Pb, Zn, Ba, Mn, Fe, Co, Ni, Cu, Cr, As, Sb, Ag and compared to data from earlier regional geochemical surveys of low order drainage samples using ArcView software. The significance of contamination levels was assessed using the Ontario aquatic sediment quality guidelines. Our results indicate widespread contamination of some major drainages by Pb, Mn, Zn and As at concentration levels anticipated to significantly affect use of the sediments by benthic organisms. Furthermore, Pb contamination shows persistence in stream sediments downstream towards agricultural areas of the floodplain and drinking water abstraction points, above which interaction with colliery mine water discharges may occur. PMID:12901084

  10. Metal contamination of active stream sediments in upper Weardale, northern Pennine Orefield, UK.

    PubMed

    Lord, R A; Morgan, P A

    2003-03-01

    In the Upper Weardale area the headwaters of the River Wear bisect the Northern Pennine Orefield, where Pb-Zn-F-Ba vein-type mineralisation has been exploited since the Roman Conquest. The area contains evidence of open pit, underground and hydraulic mining of base metal ores, associated mineral processing and smelting, exploitation of ironstones during the industrial revolution, recent extraction of fluorite and active quarrying. The aim of this study was to determine the extent of modern sediment contamination arising from these past activities. Samples of active stream sediments were collected from all major drainage channels at 1 km intervals. The sediments were analysed for Pb, Zn, Ba, Mn, Fe, Co, Ni, Cu, Cr, As, Sb, Ag and compared to data from earlier regional geochemical surveys of low order drainage samples using ArcView software. The significance of contamination levels was assessed using the Ontario aquatic sediment quality guidelines. Our results indicate widespread contamination of some major drainages by Pb, Mn, Zn and As at concentration levels anticipated to significantly affect use of the sediments by benthic organisms. Furthermore, Pb contamination shows persistence in stream sediments downstream towards agricultural areas of the floodplain and drinking water abstraction points, above which interaction with colliery mine water discharges may occur.

  11. Jovian dust streams: A monitor of Io's volcanic plume activity

    USGS Publications Warehouse

    Kruger, H.; Geissler, P.; Horanyi, M.; Graps, A.L.; Kempf, S.; Srama, R.; Moragas-Klostermeyer, G.; Moissl, R.; Johnson, T.V.; Grun, E.

    2003-01-01

    Streams of high speed dust particles originate from Jupiter's moon Io. After release from Io, the particles collect electric charges in the Io plasma torus, gain energy from the co-rotating electric field of Jupiter's magnetosphere, and leave the Jovian system into interplanetary space with escape speeds over 200 km s-1. The Galileo spacecraft has continuously monitored the dust streams during 34 revolutions about Jupiter between 1996 and 2002. The observed dust fluxes exhibit large orbit-to-orbit variability due to systematic and stochastic changes. After removal of the systematic variations, the total dust emission rate of Io has been calculated. It varies between 10-3 and 10 kg s-1, and is typically in the range of 0.1 to 1 kg s-1. We compare the dust emission rate with other markers of volcanic activity on Io like large-area surface changes caused by volcanic deposits and sightings of volcanic plumes. Copyright 2003 by the American Geophysical Union.

  12. Counting ion and water molecules in a streaming file through the open-filter structure of the K channel.

    PubMed

    Iwamoto, Masayuki; Oiki, Shigetoshi

    2011-08-24

    The mechanisms underlying the selective permeation of ions through channel molecules are a fundamental issue related to understanding how neurons exert their functions. The "knock-on" mechanism, in which multiple ions in the selectivity filter are hit by an incoming ion, is one of the leading concepts. This mechanism has been supported by crystallographic studies that demonstrated ion distribution in the structure of the Streptomyces lividans (KcsA) potassium channel. These still pictures under equilibrium conditions, however, do not provide a snapshot of the actual, ongoing permeation processes. To understand the dynamics of permeation, we determined the ratio of the ion and water flow [the water-ion coupling ratio (CR(w-i))] through the KcsA channel by measuring the streaming potential (V(stream)) electrophysiologically. The V(stream) value was converted to the CR(w-i) value, which reveals how individual ion and water molecules are queued in the narrow and short filter during permeation. At high K(+) concentrations, the CR(w-i) value was 1.0, indicating that turnover between the alternating ion and water arrays occurs in a single-file manner. At low K(+), the CR(w-i) value was increased to a point over 2.2, suggesting that the filter contained mostly one ion at a time. These average behaviors of permeation were kinetically analyzed for a more detailed understanding of the permeation process. Here, we envisioned the permeation as queues of ion and water molecules and sequential transitions between different patterns of arrays. Under physiological conditions, we predicted that the knock-on mechanism may not be predominant.

  13. Measurement of Channel Morphology in a Headwater Stream using Low-Altitude Photography and a 3D Model Software

    NASA Astrophysics Data System (ADS)

    Nidaira, K.; Hiraoka, M.; Gomi, T.; Uchiyama, Y.

    2015-12-01

    We developed a method for measuring detail channel morphology using a low elevation photographic scanning. This study was conducted in a 36-m step-pool channel segment in a headwater stream of Ooborazawa watershed located in 20 km south of Tokyo. The channels were covered by Boenninghausenia japonica and Oplismenus undulatifolius var. undulatifolius. Therefore, topographic measurement in high altitude (up to 5 m) using a drone is not applicable. D50 and D90 of channel substrates were 4 cm and 21 cm, respectively. A plastic case that equipped with two digital cameras (RICOH CX5) is mounted at the top of 2.2 m of a glass fiber pole. Photos were taken every 5 seconds from 1.8 m above ground surface. Eleven ground control points (GCP) were installed and measured coordinates. We developed digital 3D topographic model using PhotoScan Pro edition version 1.0.0 and the developed 1 cm contour map using ArcGIS version 10.2. Furthermore, we measured the number, height, and length of steps for examining the accuracy of data. Resolution of obtained topographic model was from 9 to 11 mm per pixel. 1 cm of particle was identified using photo was 1 cm. Estimated step height was agreed to the measured step height in the field. We detected maximum channel scour from October to December, 2014 with (146.5 mm/day for maximum daily rain) occurred at pools with 13cm changes , while 5 to 10 cm of changes in sediment deposition occurred from Mya to June, 2015 with 78.5 mm/day of maximum daily rain. Disposition of sediment was concentration within the sequences of step structures. Our method allows us for understanding detail sediment movement and resultant localized channel changes in steep channels.

  14. Mechanisms of Activation of Voltage-Gated Potassium Channels

    PubMed Central

    Grizel, A. V.; Glukhov, G. S.; Sokolova, O. S.

    2014-01-01

    Voltage-gated potassium ion channels (Kv) play an important role in a variety of cellular processes, including the functioning of excitable cells, regulation of apoptosis, cell growth and differentiation, the release of neurotransmitters and hormones, maintenance of cardiac activity, etc. Failure in the functioning of Kv channels leads to severe genetic disorders and the development of tumors, including malignant ones. Understanding the mechanisms underlying Kv channels functioning is a key factor in determining the cause of the diseases associated with mutations in the channels, and in the search for new drugs. The mechanism of activation of the channels is a topic of ongoing debate, and a consensus on the issue has not yet been reached. This review discusses the key stages in studying the mechanisms of functioning of Kv channels and describes the basic models of their activation known to date. PMID:25558391

  15. Using Multiple Watershed-scale Dye Tracing Tests to Study Water and Solute Transport in Naturally Obstructed Stream Channels

    NASA Astrophysics Data System (ADS)

    Jin, L.; Meeks, J. L.; Hubbard, K. A.; Kurian, L. M.; Siegel, D. I.; Lautz, L. K.; Otz, M. H.

    2007-12-01

    Temporary storage of surface water at channel sides and pools significantly affects water and solute transport downstream in watersheds. Beavers, natural "stream channel engineers", build dams which obstruct stream flow and temporarily store water in small to large ponds within stream channels. These ponds substantially delay water movement and increase the water residence time in the system. To study how water and solutes move through these obstructed stream channels, we did multiple dye tracing tests at Cherry Creek, a main tributary to Red Canyon Creek (Wind River Range, Wyoming). First we surveyed beaver dam distributions in detail within the study reaches. We then introduced dyes four times from July 2nd to 6th, 2007 using a scale-up approach. The observation site was fixed at the mouth of Cherry Creek, and 1.5 grams of Rhodamine WT (RWT) dye was injected sequentially at upstream sites with increasing test reach length. The reach lengths scaled up from 500m to 2.5 km. A field fluorometer recorded RWT concentrations every 15 seconds. The results show non-linear decreases of the peak concentration of the dye tracing cloud as the reach scaled up. Also, the times to 1.) the arrivals of the leading edges (Tl), 2.) the peak concentrations (Tp) and 3.) the tailing edges (Tt) and 4) the durations of the tracer cloud (Td) behaved non-linearly as function of length scale. For example, plots of arrivals of leading edges and tailing edges with scale distance appear to define curves of the form; Tl=27.665e1.07× Distance (r2=0.99) and Tt=162.62e0.8551× Distance (r2=0.99), respectively. The greatest non-linearity occurred for the time of tailing and the least for the time of leading edge. These observations are consistent with what would be expected with greater density of dams and/or storage volumes as the reach length increased upgradient. To come to a first approximation, we are currently modeling the breakthrough curves with the solute transport code OTIS to address

  16. Factors controlling the size and shape of stream channels in coarse noncohesive sands

    USGS Publications Warehouse

    Wolman, M. Gordon; Brush, Lucien M.

    1961-01-01

    The size and shape of equilibrium channels in uniform, noncohesive sands, 0.67 mm and 2.0 mm in diameter, were studied experimentally in a laboratory flume 52 feet long in which discharge, slope, sediment load, and bed and bank material could be varied independently. For each run a straight trapezoidal channel was molded in the sand and the flume set at a predetermined slope. Introduction of the discharge was accompanied by widening and aggradation until a stable channel was established. By definition a stable equilibrium existed when channel width, water surface slope, and rate of transport became constant. The duration of individual runs ranged from 2 to 52 hours depending upon the time required for establishing equilibrium. Stability of the banks determined channel shape. In the 2.0 mm sand at a given slope and discharge, only one depth was stable. At this depth the flow was just competent to move particles along the bed of the channel. An increase in discharge produced a wider channel of the same depth and thus transport per unit width remained at a minimum. Channels in the 0.67 mm sand were somewhat more stable and permitted a 1.5 fold increase in depth above that required to start movement of the bed material. An increased transport was associated with the increase in depth. The rate of transport is adequately described in terms of the total shear or in terms of the difference between the total shear and the critical shear required to begin movement. In these experiments the finer, or 0.67 mm, sand, began to move along the bed of the channel at a constant shear stress. Incipient movement of the coarser, or 2.0 mm, sand, varied with the shear stress as well as the mean velocity. At the initiation of movement a lower shear was associated with a higher velocity and vice versa. Anabranches of braided rivers and some natural river channels formed in relatively noncohesive materials resemble the essential characteristics of the flume channels. For a given slope and

  17. Coronal electron stream and Langmuir wave detection inside a propagation channel at 4.3 AU

    NASA Technical Reports Server (NTRS)

    Buttighoffer, A.; Pick, M.; Roelof, E. C.; Hoang, S.; Mangeney, A.; Lanzerotti, L. J.; Forsyth, R. J.; Phillips, J. L.

    1995-01-01

    Observations of an energetic interplanetary electron event associated with the production of Langmuir waves, both of which are identified at 4.3 AU by instruments on the Ulysses spacecraft, are presented in this paper. This electron event propagates inside a well-defined magnetic structure. The existence of this structure is firmly established by joint particle and plasma observations made by Ulysses instruments. Its local estimated radial width is of the order of 2.3 x 10(exp 7) km (0.15 AU). The electron beam is associated with a type III burst observed from Earth at high frequencies and at low frequencies from Ulysses in association with Langmuir waves detected inside the structure. The consistency of local (Ulysses) and remote (Earth) observations in terms of temporal and geometrical considerations establishes that the structure is anchored in the solar corona near the solar active region responisble for the observed type III emission and gives an accurate determination of the injection time for the observed electron beam. Propagation analysis of the electron event is presented. In order to quantify the magnetic field properties, a variance analysis has been performed and is presented in this paper. The analysis establishes that inside the structure the amount of magnetic energy involved in the fluctuations is less than 4% of the total magnetic energy; the minimal variance direction is well defined and in coincidence with the direction of the mean magnetic field. This configuration may produce conditions favorable for scatter free streaming of energetic electrons and/or Langmuir wave production. The results presented show that the magnetic field might play a role in stabilizing the coronal-origin plasma structures and then preserving them to large, approximately 4 AU, distances in the heliosphere.

  18. Channel morphology and bed-load yield in fluvial, formerly-glaciated headwater streams of the Columbia Mountains, Canada

    NASA Astrophysics Data System (ADS)

    Green, K. C.; Brardinoni, F.; Alila, Y.

    2013-04-01

    This study examines channel-reach morphology and bedload yield dynamics in relation to landscape structure and snowmelt hydrology in headwater streams of the Columbia Mountains, Canada. Data collection relies on field surveys and geographic information systems analysis in conjunction with a nested monitoring network of water discharge and bedload transfer. The landscape is characterized by subdued, formerly-glaciated upland topography in which the geomorphic significance of landslides and debris flows is negligible and fluvial processes prevail. While the spatial organization of channel morphology is chiefly controlled by glacially imposed local slope in conjunction with wood abundance and availability of glacigenic deposits, downstream patterns of the coarse grain-size fraction, bankfull width, bankfull depth, and stream power are all insensitive to systematic changes of local slope along the typically stepped long profiles. This is an indication that these alluvial systems have adjusted to the contemporary snowmelt-driven water and sediment transport regimes, and as such are able to compensate for the glacially-imposed boundary conditions. Bedload specific yield increases with drainage area suggesting that fluvial re-mobilization of glacial and paraglacial deposits dominate the sedimentary dynamics of basins as small as 2 km2. Stepwise multiple regression analysis shows that annual rates of sediment transfer are mainly controlled by the number of peak events over threshold discharge. During such events, repeated destabilization of channel bed armoring and re-mobilization of sediment temporarily stored behind LWD structures can generate bedload transport across the entire snowmelt season. In particular, channel morphology controls the variability of bedload response to hydrologic forcing. In the present case studies, we show that the observed spatial variability in annual bedload yield appears to be modulated by inter-basin differences in morphometric

  19. The influence of stream channels on distributions of Larrea tridentata and Ambrosia dumosa in the Mojave Desert, CA, USA: Patterns, mechanisms and effects of stream redistribution

    USGS Publications Warehouse

    Schwinning, S.; Sandquist, D.R.; Miller, D.M.; Bedford, D.R.; Phillips, S.L.; Belnap, J.

    2011-01-01

    Drainage channels are among the most conspicuous surficial features of deserts, but little quantitative analysis of their influence on plant distributions is available. We analysed the effects of desert stream channels ('washes') on Larrea tridentata and Ambrosia dumosa density and cover on an alluvial piedmont in the Mojave Desert, based on a spatial analysis of transect data encompassing a total length of 2775 m surveyed in 5 cm increments. Significant deviations from average transect properties were identified by bootstrapping. Predictably, shrub cover and density were much reduced inside washes, and elevated above average levels adjacent to washes. Average Larrea and Ambrosia cover and density peaked 1??2-1??6 m and 0??5-1??0 m from wash edges, respectively. We compared wash effects in runon-depleted (-R) sections, where washes had been cut off from runon and were presumably inactive, with those in runon-supplemented (+R) sections downslope from railroad culverts to help identify mechanisms responsible for the facilitative effect of washes on adjacent shrubs. Shrub cover and density near washes peaked in both + R and - R sections, suggesting that improved water infiltration and storage alone can cause a facilitative effect on adjacent shrubs. However, washes of < 2 m width in + R sections had larger than average effects on peak cover, suggesting that plants also benefit from occasional resource supplementation. The data suggest that channel networks significantly contribute to structuring plant communities in the Mojave Desert and their disruption has notable effects on geomorphic and ecological processes far beyond the original disturbance sites. ?? 2010 John Wiley & Sons, Ltd.

  20. Regionalized Equations for Bankfull-Discharge and Channel Characteristics of Streams in New York State - Hydrologic Region 3 East of the Hudson River

    USGS Publications Warehouse

    Mulvihill, Christiane I.; Baldigo, Barry P.

    2007-01-01

    Equations that relate drainage area to bankfull discharge and channel characteristics (such as width, depth, and cross-sectional area) at gaged sites are needed to define bankfull discharge and channel characteristics at ungaged sites and can be used for stream-restoration and protection projects, stream-channel classification, and channel assessments. These equations are intended to serve as a guide for streams in areas of similar hydrologic, climatic, and physiographic conditions. New York State contains eight hydrologic regions that were previously delineated on the basis of high-flow (flood) characteristics. This report presents predictive equations for bankfull characteristics (discharge and channel characteristics) for streams east of the Hudson River, referred to as Hydrologic Region 3. Stream-survey data and discharge records from 12 streamflow-gaging stations were used in regression analyses to relate drainage area to bankfull discharge and bankfull channel width, depth, and cross-sectional area. The four predictive equations are: bankfull discharge (cubic feet per second) = 83.8 (drainage area (square miles))0.679, (1) bankfull-channel width (feet) = 24.0 (drainage area (square miles))0.292, (2) bankfull-channel depth (feet) = 1.66 (drainage area (square miles))0.210, (3) bankfull-channel cross-sectional area (square feet) = 39.8 (drainage area (square miles))0.503. (4) The coefficients of determination (R2) for these four equations are 0.93, 0.85, 0.77, and 0.92, respectively. The high coefficients of determination for bankfull discharge and cross-sectional area indicate that much of the range in the variables is explained by the size of the drainage area; the smaller correlation coefficients for bankfull channel width and depth indicate that other factors also affect these relations. Recurrence intervals for the estimated bankfull discharge of each stream ranged from 1.16 to 3.35 years; the mean recurrence interval was 2.08 years. The 12 surveyed

  1. Allosterism and Structure in Thermally Activated Transient Receptor Potential Channels.

    PubMed

    Diaz-Franulic, Ignacio; Poblete, Horacio; Miño-Galaz, Germán; González, Carlos; Latorre, Ramón

    2016-07-01

    The molecular sensors that mediate temperature changes in living organisms are a large family of proteins known as thermosensitive transient receptor potential (TRP) ion channels. These membrane proteins are polymodal receptors that can be activated by cold or hot temperatures, depending on the channel subtype, voltage, and ligands. The stimuli sensors are allosterically coupled to a pore domain, increasing the probability of finding the channel in its ion conductive conformation. In this review we first discuss the allosteric coupling between the temperature and voltage sensor modules and the pore domain, and then discuss the thermodynamic foundations of thermo-TRP channel activation. We provide a structural overview of the molecular determinants of temperature sensing. We also posit an anisotropic thermal diffusion model that may explain the large temperature sensitivity of TRP channels. Additionally, we examine the effect of several ligands on TRP channel function and the evidence regarding their mechanisms of action. PMID:27297398

  2. Decoding the attended speech stream with multi-channel EEG: implications for online, daily-life applications

    NASA Astrophysics Data System (ADS)

    Mirkovic, Bojana; Debener, Stefan; Jaeger, Manuela; De Vos, Maarten

    2015-08-01

    Objective. Recent studies have provided evidence that temporal envelope driven speech decoding from high-density electroencephalography (EEG) and magnetoencephalography recordings can identify the attended speech stream in a multi-speaker scenario. The present work replicated the previous high density EEG study and investigated the necessary technical requirements for practical attended speech decoding with EEG. Approach. Twelve normal hearing participants attended to one out of two simultaneously presented audiobook stories, while high density EEG was recorded. An offline iterative procedure eliminating those channels contributing the least to decoding provided insight into the necessary channel number and optimal cross-subject channel configuration. Aiming towards the future goal of near real-time classification with an individually trained decoder, the minimum duration of training data necessary for successful classification was determined by using a chronological cross-validation approach. Main results. Close replication of the previously reported results confirmed the method robustness. Decoder performance remained stable from 96 channels down to 25. Furthermore, for less than 15 min of training data, the subject-independent (pre-trained) decoder performed better than an individually trained decoder did. Significance. Our study complements previous research and provides information suggesting that efficient low-density EEG online decoding is within reach.

  3. Channel processes following land use changes in a degrading steep headwater stream in North Island, New Zealand

    NASA Astrophysics Data System (ADS)

    Kasai, Mio

    2006-11-01

    In headwater streams in steep land settings, narrow and steep valley floors provide closely coupled relationships between geomorphic components including hillslopes, tributary fans, and channel reaches. These relationships together with small catchment sizes result in episodic changes to the amount of stored sediment in channels. Major sediment inputs follow high magnitude events. Subsequent exponential losses via removal of material can be represented by a relaxation curve. The influence of hillslope and tributary processes on relaxation curves, and that of altered coupling relations between components, were investigated along a 1.3 km reach of a degrading channel in the 4.8 km 2 Weraamaia Catchment, New Zealand. Extensive deforestation in the late 19th and early 20th centuries, followed by invasion of scrubs and reforestation, induced changes to major erosion types from gully complexes to shallow landslides. Changes in the size and pattern of sediment slugs from 1938 to 2002 were analysed from air photographs tied to detailed field measurement. The rate and calibre of sediment flux changed progressively following substantive hillslope input in a storm in 1938. Subsequently, the channel narrowed and incised, decoupling tributary fans from the main stem, thereby scaling down the size of sediment slugs. As a consequence, the dominant influence on the behaviour of sediment slugs and associated relaxation processes, changed from tributary fans to the type and distribution of bedrock outcrops along the reach.

  4. Wildfire Impacts on Stream Sedimentation and Channel Morphology: Revisiting the Boulder Creek Burn in Little Granite Creek

    NASA Astrophysics Data System (ADS)

    Ryan, S. E.; Dwire, K. A.; Air, Water,; Aquatic Ecosystems Program

    2011-12-01

    The magnitude of hydrologic and sedimentologic changes observed in watersheds following wildfire depend largely on the severity of the burn, landscape susceptibility to erosion, and the timing and magnitude of storms following the fire. In this study of a burned watershed in NW Wyoming (Boulder Creek burn in Little Granite Creek watershed), sedimentation impacts following a moderately sized fire (burned in 2000) were evaluated against known sediment loads measured prior to burning and against a comparable control watershed. Pre-burn data on rates of sediment transport provide useful information on the inherent variability of stream processes and were used to assess degree of departure due to disturbance from wildfire. Early observations of sediment yield showed substantially elevated rates (5x) the first year post-fire (2001), followed by less elevated rates in 2002 and 2003, signaling a return to baseline values by 3 years post-fire. More recent work, 8 years post-fire, has shown elevated suspended sediment concentrations relative to pre-burn values. We tentatively attribute this increase to destabilization of channels in the burned area due to the introduction of large wood (LW). Surveys indicated that the number of pieces of instream LW were doubled and tripled in some reaches as burned trees began to decay and fall in to the channel. Observed channel changes associated with the introduction of new wood include: 1) increase in the size and number of LW jams; 2) deposition of sediment within LW jams; 3) channel avulsions; 4) erosion of banks and terraces where wood re-directed flow into the bank; and 5) new sources of sediment due to channel instability. These results provide insight into longer-term geomorphic impacts of wildland fire that are associated with LW dynamics and changes to channel and bank stability in the burned riparian environment.

  5. Mechanism of activation of the prokaryotic channel ELIC by propylamine: a single-channel study.

    PubMed

    Marabelli, Alessandro; Lape, Remigijus; Sivilotti, Lucia

    2015-01-01

    Prokaryotic channels, such as Erwinia chrysanthemi ligand-gated ion channel (ELIC) and Gloeobacter violaceus ligand-gated ion channel, give key structural information for the pentameric ligand-gated ion channel family, which includes nicotinic acetylcholine receptors. ELIC, a cationic channel from E. chrysanthemi, is particularly suitable for single-channel recording because of its high conductance. Here, we report on the kinetic properties of ELIC channels expressed in human embryonic kidney 293 cells. Single-channel currents elicited by the full agonist propylamine (0.5-50 mM) in outside-out patches at -60 mV were analyzed by direct maximum likelihood fitting of kinetic schemes to the idealized data. Several mechanisms were tested, and their adequacy was judged by comparing the predictions of the best fit obtained with the observable features of the experimental data. These included open-/shut-time distributions and the time course of macroscopic propylamine-activated currents elicited by fast theta-tube applications (50-600 ms, 1-50 mM, -100 mV). Related eukaryotic channels, such as glycine and nicotinic receptors, when fully liganded open with high efficacy to a single open state, reached via a preopening intermediate. The simplest adequate description of their activation, the "Flip" model, assumes a concerted transition to a single intermediate state at high agonist concentration. In contrast, ELIC open-time distributions at saturating propylamine showed multiple components. Thus, more than one open state must be accessible to the fully liganded channel. The "Primed" model allows opening from multiple fully liganded intermediates. The best fits of this type of model showed that ELIC maximum open probability (99%) is reached when at least two and probably three molecules of agonist have bound to the channel. The overall efficacy with which the fully liganded channel opens was ∼ 102 (∼ 20 for α1β glycine channels). The microscopic affinity for the agonist

  6. REGIONAL ASSESSMENT OF LAND USE IMPACTS ON STREAM CHANNEL HABITAT IN THE MIDDLE COLUMBIA RIVER BASIN

    EPA Science Inventory

    Many human land uses and land cover modifications (e.g., logging, grazing, roads) tend to increase erosion, leading to an increase in fine sediment supplied to streams and potentially degrading aquatic habitat for benthic organisms. This study evaluated potential human impacts o...

  7. Influence of instream habitat and water quality on aggressive behavior in crayfish of channelized headwater streams

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many agricultural drainage ditches that border farm fields of the Midwestern United States are degraded headwater streams that possess communities of crayfish. We hypothesized that crayfish communities at sites with low instream habitat diversity and poor water quality would show greater evidence of...

  8. Serine protease activation of near-silent epithelial Na+ channels.

    PubMed

    Caldwell, Ray A; Boucher, Richard C; Stutts, M Jackson

    2004-01-01

    The regulation of epithelial Na+ channel (ENaC) function is critical for normal salt and water balance. This regulation is achieved through cell surface insertion/retrieval of channels, by changes in channel open probability (Po), or through a combination of these processes. Epithelium-derived serine proteases, including channel activating protease (CAP) and prostasin, regulate epithelial Na+ transport, but the molecular mechanism is unknown. We tested the hypothesis that extracellular serine proteases activate a near-silent ENaC population resident in the plasma membrane. Single-channel events were recorded in outside-out patches from fibroblasts (NIH/3T3) stably expressing rat alpha-, beta-, and gamma-subunits (rENaC), before and during exposure to trypsin, a serine protease homologous to CAP and prostasin. Under baseline conditions, near-silent patches were defined as having rENaC activity (NPo) < 0.03, where N is the number of channels. Within 1-5 min of 3 microg/ml bath trypsin superfusion, NPo increased approximately 66-fold (n = 7). In patches observed to contain a single functional channel, trypsin increased Po from 0.02 +/- 0.01 to 0.57 +/- 0.03 (n = 3, mean +/- SE), resulting from the combination of an increased channel open time and decreased channel closed time. Catalytic activity was required for activation of near-silent ENaC. Channel conductance and the Na+/Li+ current ratio with trypsin were similar to control values. Modulation of ENaC Po by endogenous epithelial serine proteases is a potentially important regulator of epithelial Na+ transport, distinct from the regulation achieved by hormone-induced plasma membrane insertion of channels. PMID:12967915

  9. Effects of fire and subsequent channel-reorganizing events on invertebrate drift and rainbow trout diet in small headwater streams 10 years post-disturbance

    NASA Astrophysics Data System (ADS)

    Rosenberger, A. E.; Dunham, J. B.; Wipfli, M. S.; Buffington, J. M.

    2005-05-01

    Studies examining the effects of fire on the biota of streams are often confined to immediate post-disturbance impacts; however it is also important to consider longer-term effects of fire and fire-related channel disturbances, including both negative and positive influences on stream communities. Fire and subsequent debris flows and hyperconcentrated flows destroy streamside vegetation and alter the channel morphology such that streams are wider and shallower with larger, less mobile substrate. Increased light, high temperatures, and altered stream morphology have the potential to greatly impact invertebrate communities, invertebrate drift, and drift-feeding fish diet. The goal of our study was to determine the effects of wildfire and wildfire-related disturbance on the amount and composition of stream invertebrate drift and how that translates to the diet of resident fishes 10 years post-disturbance. In the summer and fall of 2003, we set drift nets and examined the diet of fishes in 9 streams: 3 unburned; 3 burned (1992-4); and 3 burned with a subsequent channel disturbance (1992-4). Key questions include: does the taxonomic composition (richness, functional feeding groups), origin (terrestrial or aquatic), or total production (biomass) of invertebrate drift and fish diet vary with burn history? Does the composition and biomass of invertebrate drift indicate main sources of energy (allochthonous vs. autochthonous) for headwater streams affected by fire? Differences among streams in channel morphology, streamside vegetation, light input, and temperature did not correspond to consistent or marked differences in invertebrate drift productivity and only slight differences in functional feeding group composition. However, preliminary data suggest that taxon richness, though similar among burned and unburned streams, is lowest in burned and disturbed streams. Although there is a terrestrial component to fish diet in all three treatment groups, in the summer, there is

  10. Riparian deforestation, stream narrowing, and loss of stream ecosystem services

    PubMed Central

    Sweeney, Bernard W.; Bott, Thomas L.; Jackson, John K.; Kaplan, Louis A.; Newbold, J. Denis; Standley, Laurel J.; Hession, W. Cully; Horwitz, Richard J.

    2004-01-01

    A study of 16 streams in eastern North America shows that riparian deforestation causes channel narrowing, which reduces the total amount of stream habitat and ecosystem per unit channel length and compromises in-stream processing of pollutants. Wide forest reaches had more macroinvertebrates, total ecosystem processing of organic matter, and nitrogen uptake per unit channel length than contiguous narrow deforested reaches. Stream narrowing nullified any potential advantages of deforestation regarding abundance of fish, quality of dissolved organic matter, and pesticide degradation. These findings show that forested stream channels have a wider and more natural configuration, which significantly affects the total in-stream amount and activity of the ecosystem, including the processing of pollutants. The results reinforce both current policy of the United States that endorses riparian forest buffers as best management practice and federal and state programs that subsidize riparian reforestation for stream restoration and water quality. Not only do forest buffers prevent nonpoint source pollutants from entering small streams, they also enhance the in-stream processing of both nonpoint and point source pollutants, thereby reducing their impact on downstream rivers and estuaries. PMID:15381768

  11. Slack, Slick, and Sodium-Activated Potassium Channels

    PubMed Central

    Kaczmarek, Leonard K.

    2013-01-01

    The Slack and Slick genes encode potassium channels that are very widely expressed in the central nervous system. These channels are activated by elevations in intracellular sodium, such as those that occur during trains of one or more action potentials, or following activation of nonselective cationic neurotransmitter receptors such as AMPA receptors. This review covers the cellular and molecular properties of Slack and Slick channels and compares them with findings on the properties of sodium-activated potassium currents (termed KNa currents) in native neurons. Human mutations in Slack channels produce extremely severe defects in learning and development, suggesting that KNa channels play a central role in neuronal plasticity and intellectual function. PMID:24319675

  12. Immediate changes in stream channel geomorphology, aquatic habitat, and fish assemblages following dam removal in a small upland catchment

    NASA Astrophysics Data System (ADS)

    Magilligan, F. J.; Nislow, K. H.; Kynard, B. E.; Hackman, A. M.

    2016-01-01

    Dam removal is becoming an increasingly important component of river restoration, with > 1100 dams having been removed nationwide over the past three decades. Despite this recent progression of removals, the lack of pre- to post-removal monitoring and assessment limits our understanding of the magnitude, rate, and sequence of geomorphic and/or ecological recovery to dam removal. Taking advantage of the November 2012 removal of an old (~ 190 year-old) 6-m high, run-of-river industrial dam on Amethyst Brook (26 km2) in central Massachusetts, we identify the immediate eco-geomorphic responses to removal. To capture the geomorphic responses to dam removal, we collected baseline data at multiple scales, both upstream (~ 300 m) and downstream (> 750 m) of the dam, including monumented cross sections, detailed channel-bed longitudinal profiles, embeddedness surveys, and channel-bed grain size measurements, which were repeated during the summer of 2013. These geomorphic assessments were combined with detailed quantitative electrofishing surveys of stream fish richness and abundance above and below the dam site and throughout the watershed and visual surveys of native anadromous sea lamprey (Petromyzon marinus) nest sites. Post-removal assessments were complicated by two events: (1) upstream knickpoint migration exhumed an older (ca. late eighteenth century) intact wooden crib dam ~ 120 m upstream of the former stone dam, and (2) the occurrence of a 10-20 year RI flood 6 months after removal that caused further upstream incision and downstream aggradation. Now that the downstream reach has been reconnected to upstream sediment supply, the predominant geomorphic response was bed aggradation and associated fining (30-60% reduction). At dam proximal locations, aggradation ranged from 0.3 to > 1 m where a large woody debris jam enhanced aggradation. Although less pronounced, distal locations still showed aggradation with a mean depth of deposition of ~ 0.20 m over the 750-m

  13. Influences of wildfire and channel reorganization on spatial and temporal variation in stream temperature and the distribution of fish and amphibians

    USGS Publications Warehouse

    Dunham, J.B.; Rosenberger, A.E.; Luce, C.H.; Rieman, B.E.

    2007-01-01

    Wildfire can influence a variety of stream ecosystem properties. We studied stream temperatures in relation to wildfire in small streams in the Boise River Basin, located in central Idaho, USA. To examine the spatio-temporal aspects of temperature in relation to wildfire, we employed three approaches: a pre-post fire comparison of temperatures between two sites (one from a burned stream and one unburned) over 13 years, a short-term (3 year) pre-post fire comparison of a burned and unburned stream with spatially extensive data, and a short-term (1 year) comparative study of spatial variability in temperatures using a "space for time" substitutive design across 90 sites in nine streams (retrospective comparative study). The latter design included streams with a history of stand-replacing wildfire and streams with severe post-fire reorganization of channels due to debris flows and flooding. Results from these three studies indicated that summer maximum water temperatures can remain significantly elevated for at least a decade following wildfire, particularly in streams with severe channel reorganization. In the retrospective comparative study we investigated occurrence of native rainbow trout (Oncorhynchus mykiss) and tailed frog larvae (Ascaphus montanus) in relation to maximum stream temperatures during summer. Both occurred in nearly every site sampled, but tailed frog larvae were found in much warmer water than previously reported in the field (26.6??C maximum summer temperature). Our results show that physical stream habitats can remain altered (for example, increased temperature) for many years following wildfire, but that native aquatic vertebrates can be resilient. In a management context, this suggests wildfire may be less of a threat to native species than human influences that alter the capacity of stream-living vertebrates to persist in the face of natural disturbance. ?? 2007 Springer Science+Business Media, LLC.

  14. SLO2 Channels Are Inhibited by All Divalent Cations That Activate SLO1 K+ Channels.

    PubMed

    Budelli, Gonzalo; Sun, Qi; Ferreira, Juan; Butler, Alice; Santi, Celia M; Salkoff, Lawrence

    2016-04-01

    Two members of the family of high conductance K(+)channels SLO1 and SLO2 are both activated by intracellular cations. However, SLO1 is activated by Ca(2+)and other divalent cations, while SLO2 (Slack or SLO2.2 from rat) is activated by Na(+) Curiously though, we found that SLO2.2 is inhibited by all divalent cations that activate SLO1, with Zn(2+)being the most effective inhibitor with an IC50of ∼8 μmin contrast to Mg(2+), the least effective, with an IC50of ∼ 1.5 mm Our results suggest that divalent cations are not SLO2 pore blockers, but rather inhibit channel activity by an allosteric modification of channel gating. By site-directed mutagenesis we show that a histidine residue (His-347) downstream of S6 reduces inhibition by divalent cations. An analogous His residue present in some CNG channels is an inhibitory cation binding site. To investigate whether inhibition by divalent cations is conserved in an invertebrate SLO2 channel we cloned the SLO2 channel fromDrosophila(dSLO2) and compared its properties to those of rat SLO2.2. We found that, like rat SLO2.2, dSLO2 was also activated by Na(+)and inhibited by divalent cations. Inhibition of SLO2 channels in mammals andDrosophilaby divalent cations that have second messenger functions may reflect the physiological regulation of these channels by one or more of these ions.

  15. Open-channel block by internally applied amines inhibits activation gate closure in batrachotoxin-activated sodium channels.

    PubMed Central

    Zamponi, G W; French, R J

    1994-01-01

    We have studied the action of several pore-blocking amines on voltage-dependent activation gating of batrachotoxin(BTX)-activated sodium channels, from bovine heart and rat skeletal muscle, incorporated into planar lipid bilayers. Although structurally simpler, the compounds studied show general structural features and channel-inhibiting actions that resemble those of lidocaine. When applied to the cytoplasmic end of the channel, these compounds cause a rapid, voltage-dependent, open-channel block seen as a reduction in apparent single-channel amplitude (companion paper). Internal application of phenylpropanolamine, phenylethylamine, phenylmethylamine, and diethylamine, as well as causing open-channel block, reduces the probability of channel closure, producing a shift of the steady-state activation curve toward more hyperpolarizing potentials. These gating effects were observed for both cardiac and skeletal muscle channels and were not evoked by addition of equimolar N-Methyl-D-Glucamine, suggesting a specific interaction of the blockers with the channel rather than a surface charge effect. Kinetic analysis of phenylpropanolamine action on skeletal muscle channels indicated that phenylpropanolamine reduced the closed probability via two separate mechanisms. First, mean closed durations were slightly abbreviated in its presence. Second, and more important, the frequency of the gating closures was reduced. This action was correlated with the degree, and the voltage dependence, of open-channel block, suggesting that the activation gate cannot close while the pore is occluded by the blocker. Such a mechanism might underlie the previously reported immobilization of gating charge associated with local anesthetic block of unmodified sodium channels. PMID:7811914

  16. Tonic PKA Activity Regulates SK Channel Nanoclustering and Somatodendritic Distribution.

    PubMed

    Abiraman, Krithika; Sah, Megha; Walikonis, Randall S; Lykotrafitis, George; Tzingounis, Anastasios V

    2016-06-01

    Small-conductance calcium-activated potassium (SK) channels mediate a potassium conductance in the brain and are involved in synaptic plasticity, learning, and memory. SK channels show a distinct subcellular localization that is crucial for their neuronal functions. However, the mechanisms that control this spatial distribution are unknown. We imaged SK channels labeled with fluorophore-tagged apamin and monitored SK channel nanoclustering at the single molecule level by combining atomic force microscopy and toxin (i.e., apamin) pharmacology. Using these two complementary approaches, we found that native SK channel distribution in pyramidal neurons, across the somatodendritic domain, depends on ongoing cyclic adenosine monophosphate (cAMP)-protein kinase A (PKA) levels, strongly limiting SK channel expression at the pyramidal neuron soma. Furthermore, tonic cAMP-PKA levels also controlled whether SK channels were expressed in nanodomains as single entities or as a group of multiple channels. Our study reveals a new level of regulation of SK channels by cAMP-PKA and suggests that ion channel topography and nanoclustering might be under the control of second messenger cascades. PMID:27107637

  17. Small Conductance Ca2+-Activated K+ Channels and Cardiac Arrhythmias

    PubMed Central

    Zhang, Xiao-Dong; Lieu, Deborah K.; Chiamvimonvat, Nipavan

    2015-01-01

    Small conductance Ca2+-activated K+ (SK, KCa2) channels are unique in that they are gated solely by changes in intracellular Ca2+ and hence, function to integrate intracellular Ca2+ and membrane potentials on a beat-to-beat basis. Recent studies have provided evidence for the existence and functional significance of SK channels in the heart. Indeed, our knowledge of cardiac SK channels has been greatly expanded over the past decade. Interests in cardiac SK channels are further driven by recent studies suggesting the critical roles of SK channels in human atrial fibrillation, SK channel as a possible novel therapeutic target in atrial arrhythmias and up-regulation of SK channels in heart failure (HF) in animal models and human HF. However, there remain critical gaps in our knowledge. Specifically, blockade of SK channels in cardiac arrhythmias has been shown to be both anti-arrhythmic and proarrhythmic. This contemporary review will provide an overview of the literature on the role of cardiac SK channels in cardiac arrhythmias and to serve as a discussion platform for the current clinical perspectives. At the translational level, development of SK channel blockers as a new therapeutic target in the treatment of atrial fibrillation and the possible pro-arrhythmic effects merit further considerations and investigations. PMID:25956967

  18. Oxidative Stress and Maxi Calcium-Activated Potassium (BK) Channels

    PubMed Central

    Hermann, Anton; Sitdikova, Guzel F.; Weiger, Thomas M.

    2015-01-01

    All cells contain ion channels in their outer (plasma) and inner (organelle) membranes. Ion channels, similar to other proteins, are targets of oxidative impact, which modulates ion fluxes across membranes. Subsequently, these ion currents affect electrical excitability, such as action potential discharge (in neurons, muscle, and receptor cells), alteration of the membrane resting potential, synaptic transmission, hormone secretion, muscle contraction or coordination of the cell cycle. In this chapter we summarize effects of oxidative stress and redox mechanisms on some ion channels, in particular on maxi calcium-activated potassium (BK) channels which play an outstanding role in a plethora of physiological and pathophysiological functions in almost all cells and tissues. We first elaborate on some general features of ion channel structure and function and then summarize effects of oxidative alterations of ion channels and their functional consequences. PMID:26287261

  19. Sediment Mobilization and Storage Dynamics of a Debris Flow Impacted Stream Channel using Multi-Temporal Structure from Motion Photogrammetry

    NASA Astrophysics Data System (ADS)

    Bailey, T. L.; Sutherland-Montoya, D.

    2015-12-01

    High resolution topographic analysis methods have become important tools in geomorphology. Structure from Motion photogrammetry offers a compelling vehicle for geomorphic change detection in fluvial environments. This process can produce arbitrarily high resolution, geographically registered spectral and topographic coverages from a collection of overlapping digital imagery from consumer cameras. Cuneo Creek has had three historically observed episodes of rapid aggradation (1955, 1964, and 1997). The debris flow deposits continue to be major sources of sediment sixty years after the initial slope failure. Previous studies have monitored the sediment storage volume and particle size since 1976 (in 1976, 1982, 1983, 1985, 1986, 1987, 1998, 2003). We reoccupied 3 previously surveyed stream cross sections on Sept 30, 2014 and March 30, 2015, and produced photogrammetric point clouds using a pole mounted camera with a remote view finder to take nadir view images from 4.3 meters above the channel bed. Ground control points were registered using survey grade GPS and typical cross sections used over 100 images to build the structure model. This process simultaneously collects channel geometry and we used it to also generate surface texture metrics, and produced DEMs with point cloud densities above 5000 points / m2. In the period between the surveys, a five year recurrence interval discharge of 20 m3/s scoured the channel. Surface particle size distribution has been determined for each observation period using image segmentation algorithms based on spectral distance and compactness. Topographic differencing between the point clouds shows substantial channel bed mobilization and reorganization. The net decline in sediment storage is in excess of 4 x 10^5 cubic meters since the 1964 aggradation peak, with associated coarsening of surface particle sizes. These new methods provide a promising rapid assessment tool for measurement of channel responses to sediment inputs.

  20. Wildfire, channel disturbance, and stream temperature: spatio-temporal patterns and associations with the distribution of fish and amphibians in central Idaho

    NASA Astrophysics Data System (ADS)

    Dunham, J. B.; Luce, C. H.; Rosenberger, A. E.; Gutierrez, B.; Nagel, D. E.; Rieman, B. E.

    2005-05-01

    Temperature is a critical factor in stream ecosystems, and one that is very likely to be altered by wildfire and associated channel disturbance. In central Idaho streams, temperatures after wildfires may increase following loss of shade from riparian vegetation, and changes in channel structure that increase exposure to solar radiation and decreased hyporheic exchanges. To examine the spatio-temporal aspects temperature in relation to these influences, we employed three approaches: a long-term pre-post fire comparison of temperatures between a pair of streams, one burned and one unburned; a short-term pre-post fire comparison of a burned and unburned stream with spatially extensive data; a short-term comparative study of spatial variability in temperatures using a "space for time" substitutive design. These three approaches provided key insights into the value of each study approach and revealed some expected and some surprising associations between temperature and occurrence of native trout and tailed frogs. To further understand potential mechanisms influencing stream temperature, we used field-validated estimates of solar radiation to model the effects of riparian shade from remotely sensed vegetation data. These models confirmed the importance of riparian influences linked to wildfire for stream temperature in our study system. The collective results of this work highlight the importance of spatio-temporal variability in study designs to quantify the effects of wildfire and disturbance on stream temperatures, and the implications of stream temperature for aquatic species in a broad landscape context.

  1. Sensitivity of Off-Channel Salmon Rearing Habitats to Changing Base Flows in Low-Gradient Reaches of Central Idaho Mountain Streams

    NASA Astrophysics Data System (ADS)

    McKean, J. A.; Thurow, R.; Tonina, D.; Isaak, D.; Bohn, C.

    2010-12-01

    Critical rearing habitats for juvenile salmon and trout are frequently in off-channel areas of shallow, low-velocity water. Typically, these are remnants of abandoned channel positions that are still hydraulically connected to the contemporary main channel. However, the size and spatial arrangement of this habitat is strongly dependent on water stage in the main channel. In two salmon-bearing streams in the Middle Fork Salmon River, Idaho, we used a high-resolution channel DEM and a 1D fluid dynamics model to define the location, depth, total area, frequency, and timing and duration of flooding of off-channel habitat. We then predicted changes in water surface elevation in the main channel over a range of low flow discharges and remapped the functional off-channel areas at each flow stage. Measurements at nearby gages indicate that average late summer and autumn low flows in these streams have declined by about 7% per decade over the prior 60 years. Modern off-channel habitat along the 20km of study streams is not uniformly arranged, even at high flows, and the distribution becomes still more restricted in space and time as flows decline. Progeny of summer- and early fall-spawning Chinook salmon rear for up to 2 years in these streams before migrating to the ocean, with much of that time spent in the off-channel habitat. Progeny of spring-spawning steelhead use the same areas for up to 3 years. While much prior research has focused on the effects of climate change on the availability and condition of spawning sites and on water temperatures, this study documents likely changes in the amount and condition of rearing habitat. Further investigation is needed to understand the ecological consequences and whether the declining anadromous fish populations may be at some risk from diminishing rearing habitat during declining base flows caused by external forces, such as a changing climate, dams, or water extractions.

  2. The role of water exchange between a stream channel and its hyporheic zone in nitrogen cycling at the terrestrial-aquatic interface

    USGS Publications Warehouse

    Triska, F.J.; Duff, J.H.; Avanzino, R.J.

    1993-01-01

    The subsurface riparian zone was examined as an ecotone with two interfaces. Inland is a terrestrial boundary, where transport of water and dissolved solutes is toward the channel and controlled by watershed hydrology. Streamside is an aquatic boundary, where exchange of surface water and dissolved solutes is bi-directional and flux is strongly influenced by channel hydraulics. Streamside, bi-directional exchange of water was qualitatively defined using biologically conservative tracers in a third order stream. In several experiments, penetration of surface water extended 18 m inland. Travel time of water from the channel to bankside sediments was highly variable. Subsurface chemical gradients were indirectly related to the travel time. Sites with long travel times tended to be low in nitrate and DO (dissolved oxygen) but high in ammonium and DOC (dissolved organic carbon). Sites with short travel times tended to be high in nitrate and DO but low in ammonium and DOC. Ammonium concentration of interstitial water also was influenced by sorption-desorption processes that involved clay minerals in hyporheic sediments. Denitrification potential in subsurface sediments increased with distance from the channel, and was limited by nitrate at inland sites and by DO in the channel sediments. Conversely, nitrification potential decreased with distance from the channel, and was limited by DO at inland sites and by ammonium at channel locations. Advection of water and dissolved oxygen away from the channel resulted in an oxidized subsurface habitat equivalent to that previously defined as the hyporheic zone. The hyporheic zone is viewed as stream habitat because of its high proportion of surface water and the occurrence of channel organisms. Beyond the channel's hydrologic exchange zone, interstitial water is often chemically reduced. Interstitial water that has not previously entered the channel, groundwater, is viewed as a terrestrial component of the riparian ecotone. Thus

  3. Exploring geomorphic controls on fish bioenergetics in mountain streams: linkages between channel morphology and rearing habitat for cutthroat trout

    NASA Astrophysics Data System (ADS)

    Cienciala, P.; Hassan, M. A.

    2013-12-01

    Landscape heterogeneity constitutes an important control on spatial distribution of habitat for living organisms, at a range of spatial scales. For example, spatial variation in geomorphic processes can spatially structure populations as well as entire communities, and affect various ecosystem processes. We have coupled a 2D hydrodynamic model with a bioenergetic model to study the effects of various channel morphologies and bed textures on rearing habitat for coastal cutthroat trout (Oncorhynchus clarki clarki) in four reaches of a mountain stream. The bioenergetic model uses energy conservation principle to calculate energy budget for fish at any point of the study domain, given a set of relevant local conditions. Specifically, the energy intake is a function of food availability (invertebrate drift) while the energy expenditure occurs through, for example, basal metabolism and swimming to hold position against the flow. Channel morphology and bed texture, through their influence on channel hydraulics, can exert strong control on the spatial pattern of both food flux and swimming cost for drift-feeding fish. Therefore, the coupled hydrodynamic and bioenergetic models, parameterized using an extensive field data set, enabled us to explore mechanistic linkages between geomorphic properties of the study reaches, food resource availability, and the energetic profitability of rearing habitat for different age-classes at both between- and within-reach spatial scales.

  4. Assessment of channel changes in a Mediterranean ephemeral stream since the early twentieth century. The Rambla de Cervera, eastern Spain

    NASA Astrophysics Data System (ADS)

    Segura-Beltrán, Francisca; Sanchis-Ibor, Carles

    2013-11-01

    An analysis of morphological changes during the last six decades is presented for a 16.5-km reach of the Rambla de Cervera, a Mediterranean ephemeral stream located in eastern Spain. Channel changes were analysed through a range of techniques, specifically the analysis of aerial photographs with geographical information systems (GIS) and comparison of topographic surveys. The gravel channel underwent a general decline over the study period, losing width (68.5%) and surface area (45.7%) caused by the development of established islands frequently attached to the floodplain. These morphological changes exhibit an interesting temporal variability, with a maximum decrease of the gravel channel in the period 1946-1956 and another narrowing stage between 1977 and 1991. Two periods (1956-1977 and 1991-2006) also had mixed performance. In addition, incision processes occurred along the entire study reach at an average depth of 3.5 m. Natural and human-induced factors producing contradictory effects are considered responsible for changes in the Rambla de Cervera.

  5. Indirect activation of the epithelial Na+ channel by trypsin.

    PubMed

    Bengrine, Abderrahmane; Li, Jinqing; Hamm, L Lee; Awayda, Mouhamed S

    2007-09-14

    We tested the hypothesis that the serine protease trypsin can indirectly activate the epithelial Na(+) channel (ENaC). Experiments were carried out in Xenopus oocytes and examined the effects on the channel formed by all three human ENaC subunits and that formed by Xenopus epsilon and human beta and gamma subunits (epsilonbetagammaENaC). Low levels of trypsin (1-10 ng/ml) were without effects on the oocyte endogenous conductances and were specifically used to test the effects on ENaC. Addition of 1 ng/ml trypsin for 60 min stimulated the amiloride-sensitive human ENaC conductance (g(Na)) by approximately 6-fold. This effect on the g(Na) was [Na(+)]-independent, thereby ruling out an interaction with channel feedback inhibition by Na(+). The indirect nature of this activation was confirmed in cell-attached patch clamp experiments with trypsin added to the outside of the pipette. Trypsin was comparatively ineffective at activating epsilonbetagammaENaC, a channel that exhibited a high spontaneous open probability. These observations, in combination with surface binding experiments, indicated that trypsin indirectly activated membrane-resident channels. Activation by trypsin was also dependent on catalytic activity of this protease but was not accompanied by channel subunit proteolysis. Channel activation was dependent on downstream activation of G-proteins and was blocked by G-protein inhibition by injection of guanyl-5'-yl thiophosphate and by pre-stimulation of phospholipase C. These data indicate a receptor-mediated activation of ENaC by trypsin. This trypsin-activated receptor is distinct from that of protease-activated receptor-2, because the response to trypsin was unaffected by protease-activated receptor-2 overexpression or knockdown. PMID:17627947

  6. Chloride dependence of hyperpolarization-activated chloride channel gates.

    PubMed

    Pusch, M; Jordt, S E; Stein, V; Jentsch, T J

    1999-03-01

    1. ClC proteins are a class of voltage-dependent Cl- channels with several members mutated in human diseases. The prototype ClC-0 Torpedo channel is a dimeric protein; each subunit forms a pore that can gate independently from the other one. A common slower gating mechanism acts on both pores simultaneously; slow gating activates ClC-0 at hyperpolarized voltages. The ClC-2 Cl- channel is also activated by hyperpolarization, as are some ClC-1 mutants (e.g. D136G) and wild-type (WT) ClC-1 at certain pH values. 2. We studied the dependence on internal Cl- ([Cl-]i) of the hyperpolarization-activated gates of several ClC channels (WT ClC-0, ClC-0 mutant P522G, ClC-1 mutant D136G and an N-terminal deletion mutant of ClC-2), by patch clamping channels expressed in Xenopus oocytes. 3. With all these channels, reducing [Cl-]i shifted activation to more negative voltages and reduced the maximal activation at most negative voltages. 4. We also investigated the external halide dependence of WT ClC-2 using two-electrode voltage-clamp recording. Reducing external Cl- ([Cl-]o) activated ClC-2 currents. Replacing [Cl-]o by the less permeant Br- reduced channel activity and accelerated deactivation. 5. Gating of the ClC-2 mutant K566Q in normal [Cl-]o resembled that of WT ClC-2 in low [Cl-]o, i.e. channels had a considerable open probability (Po) at resting membrane potential. Substituting external Cl- by Br- or I- led to a decrease in Po. 6. The [Cl-]i dependence of the hyperpolarization-activated gates of various ClC channels suggests a similar gating mechanism, and raises the possibility that the gating charge for the hyperpolarization-activated gate is provided by Cl-. 7. The external halide dependence of hyperpolarization-activated gating of ClC-2 suggests that it is mediated or modulated by anions as in other ClC channels. In contrast to the depolarization-activated fast gates of ClC-0 and ClC-1, the absence of Cl- favours channel opening. Lysine 556 may be important for the

  7. The use of stream flow routing for direct channel precipitation with isotopically-based hydrograph separations: the role of new water in stormflow generation

    NASA Astrophysics Data System (ADS)

    Renshaw, Carl E.; Feng, Xiahong; Sinclair, Kelsey J.; Dums, Raymond H.

    2003-03-01

    Understanding the pathways by which event water contributes to stream stormflow provides insight into stormflow generation mechanisms. We analyze the impact of storm size on the relative contribution of event water to stormflow by using natural variations in the oxygen isotopic composition of precipitation and stream water to separate multiple stormflow hydrographs from a single fourth-order, 1212 ha catchment. We extend previous isotope-based hydrograph separations by independently accounting for the contribution of event water via direct channel precipitation to the stream hydrograph. The direct channel precipitation contribution is determined using a numerical model of stream flow routing though the catchment, taking precipitation and digital elevation data as input variables. For the range of storm sizes sampled, having recurrence intervals ranging from less than a week to ˜4 months, essentially all the event water in stream stormflow can be attributed to direct channel precipitation. Event water not directly falling on the stream channel indirectly contributes to stormflow by increasing the subsurface discharge of pre-event water to the stream. Neither the hydrograph separation data, field observations during the precipitation events, nor experimental observations of flow in a large-scale natural soil column extracted from the watershed are consistent with macropore flow or groundwater ridging as the primary mechanism responsible for increasing subsurface discharge. Results from a series of artificial rain experiments using the unsaturated natural soil column are consistent with a preferential kinematic flow model and indicate that the discharge of pre-event water to the stream during a storm event may be controlled by kinematic flow processes within the watershed soils.

  8. Hydraulic modeling of stream channels and structures in Harbor and Crow Hollow Brooks, Meriden, Connecticut

    USGS Publications Warehouse

    Weiss, Lawrence A.; Sears, Michael P.; Cervione, Michael A.

    1994-01-01

    Effects of urbanization have increased the frequency and size of floods along certain reaches of Harbor Brook and Crow Hollow Brook in Meriden, Conn. A floodprofile-modeling study was conducted to model the effects of selected channel and structural modifications on flood elevations and inundated areas. The study covered the reach of Harbor Brook downstream from Interstate 691 and the reach of Crow Hollow Brook downstream from Johnson Avenue. Proposed modifications, which include changes to bank heights, channel geometry, structural geometry, and streambed armoring on Harbor Brook and changes to bank heights on Crow Hollow Brook, significantly lower flood elevations. Results of the modeling indicate a significant reduction of flood elevations for the 10-year, 25-year, 35-year, 50-year, and 100-year flood frequencies using proposed modifications to (1 ) bank heights between Harbor Brook Towers and Interstate 691 on Harbor Brook, and between Centennial Avenue and Johnson Avenue on Crow Hollow Brook; (2) channel geometry between Coe Avenue and Interstate 69 1 on Harbor Brook; (3) bridge and culvert opening geometry between Harbor Brook Towers and Interstate 691 on Harbor Brook; and (4) channel streambed armoring between Harbor Brook Towers and Interstate 691 on Harbor Brook. The proposed modifications were developed without consideration of cost-benefit ratios.

  9. Human activities impact on mountain river channels (case study of Kamchatka peninsula rivers)

    NASA Astrophysics Data System (ADS)

    Ermakova, Aleksandra S.

    2010-05-01

    Human-induced driving factors along with natural environmental changes greatly impact on fluvial regime of rivers. On mountain and semi-mountain territories these processes are developed in the most complicated manner due to man-made activities diversity throughout river basins. Besides these processes are significantly enhanced because of the disastrous natural processes (like volcanic and mud-flow activity) frequent occurrences in mountainous regions. On of the most striking example on the matter is Kamchatka peninsula which is located at the North-West part of Russian Federation. This paper contributes to the study of human activities impact on fluvial systems in this volcanic mountain region. Human effects on rivers directly alter channel morphology and deformations, dynamics of water and sediment movement, aquatic communities or indirectly affect streams by altering the movement of water and sediment into the channel. In case study of Kamchatka peninsula human activities affect fluvial systems through engineering works including construction of bridges, dams and channel diversions and placer mining. These processes are characterized by spatial heterogeneity because of irregular population distribution. Due to specific natural conditions of the peninsula the most populated areas are the valleys of big rivers (rivers Kamchatka, Avacha, Bistraya (Bolshaya), etc) within piedmont and plain regions. These rivers are characterized by very unstable channels. Both with man-made activities this determines wide range of fluvial system changes. Firstly bridges construction leads to island and logjam formation directly near their piers and intensification of channels patterns shifts. Furthermore rivers of the peninsula are distinguished for high water flow velocities and water rate. Incorrect bridge constructions both with significant channel deformations lead to the destructions of the bridges themselves due to intensive bank erosion. Secondly, intensive water flow

  10. Channel response to tectonic forcing: field analysis of stream morphology and hydrology in the Mendocino triple junction region, northern California

    NASA Astrophysics Data System (ADS)

    Snyder, Noah P.; Whipple, Kelin X.; Tucker, Gregory E.; Merritts, Dorothy J.

    2003-07-01

    An empirical calibration of the shear stress model for bedrock incision is presented, using field and hydrologic data from a series of small, coastal drainage basins near the Mendocino triple junction in northern California. Previous work comparing basins from the high uplift zone (HUZ, uplift rates around 4 mm/year) to ones in the low uplift zone (LUZ, ˜0.5 mm/year) indicates that the HUZ channels are about twice as steep for a given drainage area. This observation suggests that incision processes are more effective in the HUZ. It motivates a detailed field study of channel morphology in the differing tectonic settings to test whether various factors that are hypothesized to influence incision rates (discharge, channel width, lithology, sediment load) change in response to uplift or otherwise differ between the HUZ and LUZ. Analysis of regional stream gaging data for mean annual discharge and individual floods yields a linear relationship between discharge and drainage area. Increased orographic precipitation in the HUZ accounts for about a twofold increase in discharge in this area, corresponding to an assumed increase in the erosional efficiency of the streams. Field measurements of channel width indicate a power-law relationship between width and drainage area with an exponent of ˜0.4 and no significant change in width between the uplift rate zones, although interpretation is hampered by a difference in land use between the zones. The HUZ channel width dataset reveals a scaling break interpreted to be the transition between colluvial- and fluvial-dominated incision processes. Assessments of lithologic resistance using a Schmidt hammer and joint surveys show that the rocks of the study area should be fairly similar in their susceptibility to erosion. The HUZ channels generally have more exposed bedrock than those in the LUZ, which is consistent with protection by sediment cover inhibiting incision in the LUZ. However, this difference is likely the result of a

  11. Ice in Channels and Ice-Rock Mixtures in Valleys on Mars: Did They Slide on Deformable Rubble Like Antarctic Ice Streams?

    NASA Technical Reports Server (NTRS)

    Lucchitta, B. K.

    1997-01-01

    Recent studies of ice streams in Antarctica reveal a mechanism of basal motion that may apply to channels and valleys on Mars. The mechanism is sliding of the ice on deformable water-saturated till under high pore pressures. It has been suggested by Lucchitta that ice was present in outflow channels on Mars and gave them their distinctive morphology. This ice may have slid like Antarctic ice streams but on rubbly weathering products rather than till. However, to generate water under high pore pressures, elevated heatflow is needed to melt the base of the ice. Either volcanism or higher heatflow more than 2 b.y. ago could have raised the basal temperature. Regarding valley networks, higher heatflow 3 b.y. ago could have allowed sliding of ice-saturated overburden at a few hundred meters depth. If the original, pristine valleys were somewhat deeper than they are now, they could have formed by the same mechanism. Recent sounding of the seafloor in front of the Ross Ice Shelf in Antarctica reveals large persistent patterns of longitudinal megaflutes and drumlinoid forms, which bear remarkable resemblance to longitudinal grooves and highly elongated streamlined islands found on the floors of martian outflow channels. The flutes are interpreted to have formed at the base of ice streams during the last glacial advance. Additional similarities of Antarctic ice streams with martian outflow channels are apparent. Antarctic ice streams are 30 to 80 km wide and hundreds of kilometers long. Martian outflow channels have similar dimensions. Ice stream beds are below sea level. Carr determined that most common floor elevations of martian outflow channels lie below martian datum, which may have been close to or below past martian sea levels. The Antarctic ice stream bed gradient is flat and locally may go uphill, and surface slopes are exceptionally. Martian channels also have floor gradients that are shallow or go uphill locally and have low surface gradients. The depth to the

  12. Erosion, sediment discharge, and channel morphology in the upper Chattahoochee River basin, Georgia, with a discussion of the contribution of suspended sediment to stream quality

    USGS Publications Warehouse

    Faye, Robert E.; Carey, W.P.; Stamer, J.K.; Kleckner, R.L.

    1980-01-01

    The 3,550 square miles of the Upper Chattahoochee River basin is an area of diverse physiographic and land-use characteristics. The headwater areas are mountainous with steep, relatively narrow channels. Land in the headwater areas is heavily forested, but small towns and farms are common in the valleys of large streams. Downstream, the basin is characterized by low hills and wider stream channels. Land in this part of the basin is also predominantly forested; however, large agricultural and urban areas are common. Urban land use is particularly intensive within the Atlanta Metropolitan Area.

  13. An anion channel in Arabidopsis hypocotyls activated by blue light

    NASA Technical Reports Server (NTRS)

    Cho, M. H.; Spalding, E. P.; Evans, M. L. (Principal Investigator)

    1996-01-01

    A rapid, transient depolarization of the plasma membrane in seedling stems is one of the earliest effects of blue light detected in plants. It appears to play a role in transducing blue light into inhibition of hypocotyl (stem) elongation, and perhaps other responses. The possibility that activation of a Cl- conductance is part of the depolarization mechanism was raised previously and addressed here. By patch clamping hypocotyl cells isolated from dark-grown (etiolated) Arabidopsis seedlings, blue light was found to activate an anion channel residing at the plasma membrane. An anion-channel blocker commonly known as NPPB 15-nitro-2-(3-phenylpropylamino)-benzoic acid] potently and reversibly blocked this anion channel. NPPB also blocked the blue-light-induced depolarization in vivo and decreased the inhibitory effect of blue light on hypocotyl elongation. These results indicate that activation of this anion channel plays a role in transducing blue light into growth inhibition.

  14. Relationships of elevation, channel slope, and stream width to occurrences of native fishes at the Great Plains-Rocky Mountains interface

    USGS Publications Warehouse

    Brunger, Lipsey T.S.; Hubert, W.A.; Rahel, F.J.

    2005-01-01

    Environmental gradients occur with upstream progression from plains to mountains and affect the occurrence of native warmwater fish species, but the relative importance of various environmental gradients are not defined. We assessed the relative influences of elevation, channel slope, and stream width on the occurrences of 15 native warmwater fish species among 152 reaches scattered across the North Platte River drainage of Wyoming at the interface of the Great Plains and Rocky Mountains. Most species were collected in reaches that were lower in elevation, had lower channel slopes, and were wider than the medians of the 152 sampled reaches. Several species occurred over a relatively narrow range of elevation, channel slope, or stream width among the sampled reaches, but the distributions of some species appeared to extend beyond the ranges of the sampled reaches. We identified competing logistic-regression models that accounted for the occurrence of individual species using the information-theoretic approach. Linear logistic-regression models accounted for patterns in the data better than curvilinear models for all species. The highest ranked models included channel slope for seven species, elevation for six species, stream width for one species, and both channel slope and stream width for one species. Our results suggest that different environmental gradients may affect upstream boundaries of different fish species at the interface of the Great Plains and Rocky Mountains in Wyoming.

  15. Ion permeation of AQP6 water channel protein. Single channel recordings after Hg2+ activation.

    PubMed

    Hazama, Akihiro; Kozono, David; Guggino, William B; Agre, Peter; Yasui, Masato

    2002-08-01

    Aquaporin-6 (AQP6) has recently been identified as an intracellular vesicle water channel with anion permeability that is activated by low pH or HgCl2. Here we present direct evidence of AQP6 channel gating using patch clamp techniques. Cell-attached patch recordings of AQP6 expressed in Xenopus laevis oocytes indicated that AQP6 is a gated channel with intermediate conductance (49 picosiemens in 100 mm NaCl) induced by 10 microm HgCl2. Current-voltage relationships were linear, and open probability was fairly constant at any given voltage, indicating that Hg2+-induced AQP6 conductance is voltage-independent. The excised outside-out patch recording revealed rapid activation of AQP6 channels immediately after application of 10 microm HgCl2. Reduction of both Na+ and Cl- concentrations from 100 to 30 mm did not shift the reversal potential of the Hg2+-induced AQP6 current, suggesting that Na+ is as permeable as Cl-. The Na+ permeability of Hg2+-induced AQP6 current was further demonstrated by 22Na+ influx measurements. Site-directed mutagenesis identified Cys-155 and Cys-190 residues as the sites of Hg2+ activation both for water permeability and ion conductance. The Hill coefficient from the concentration-response curve for Hg2+-induced conductance was 1.1 +/- 0.3. These data provide the first evidence of AQP6 channel gating at a single-channel level and suggest that each monomer contains the pore region for ions based on the number of Hg2+-binding sites and the kinetics of Hg2+-activation of the channel. PMID:12034750

  16. Response of fish populations to natural channel design restoration in streams of the Catskill Mountains, New York

    USGS Publications Warehouse

    Baldigo, Barry P.; Warren, D.R.; Ernst, A.G.; Mulvihill, C.I.

    2008-01-01

    Many streams and rivers throughout North America have been extensively straightened, widened, and hardened since the middle 1800s, but related effects on aquatic ecosystems have seldom been monitored, described, or published. Beginning in the early 1990s, reach-level restoration efforts began to base projects on natural channel design (NCD) techniques and Rosgen's (1994b, 1996) river classification system in an effort to duplicate or mimic stable reference reach geomorphology. Four reaches in three streams of the Catskill Mountains, New York, were restored from 2000 to 2002 using NCD techniques to decrease bed and bank erosion rates, decrease sediment loads, and improve water quality. The effects of restoration on the health of fish assemblages were assessed through a before-after, control-impact (BACI) study design to quantify the net changes in population and community indices at treatment reaches relative to index changes at unaltered reference reaches from 1999 to 2004. After restoration, community richness and biomass at treatment reaches increased by more than one-third. Changes in fish communities were caused mainly by shifts in dominant species populations; fish community biomass and total fish abundance were generally dominated by daces or daces and sculpins before restoration and by one or more salmonid species after restoration. Density and biomass of eastern blacknose dace Rhinichthys atratulus, longnose dace R. cataractae, and slimy sculpin Cottus cognatus did not change appreciably, whereas net salmonid density and biomass increased substantially after restoration. These changes were driven primarily by large increases in populations of brown trout Salmo trutta. The findings demonstrate that the structure, function, and ultimately the health of resident fish populations and communities can be improved, at least over the short term, through NCD restoration in perturbed streams of the Catskill Mountains. ?? Copyright by the American Fisheries Society

  17. Multi-channel fiber photometry for population neuronal activity recording.

    PubMed

    Guo, Qingchun; Zhou, Jingfeng; Feng, Qiru; Lin, Rui; Gong, Hui; Luo, Qingming; Zeng, Shaoqun; Luo, Minmin; Fu, Ling

    2015-10-01

    Fiber photometry has become increasingly popular among neuroscientists as a convenient tool for the recording of genetically defined neuronal population in behaving animals. Here, we report the development of the multi-channel fiber photometry system to simultaneously monitor neural activities in several brain areas of an animal or in different animals. In this system, a galvano-mirror modulates and cyclically couples the excitation light to individual multimode optical fiber bundles. A single photodetector collects excited light and the configuration of fiber bundle assembly and the scanner determines the total channel number. We demonstrated that the system exhibited negligible crosstalk between channels and optical signals could be sampled simultaneously with a sample rate of at least 100 Hz for each channel, which is sufficient for recording calcium signals. Using this system, we successfully recorded GCaMP6 fluorescent signals from the bilateral barrel cortices of a head-restrained mouse in a dual-channel mode, and the orbitofrontal cortices of multiple freely moving mice in a triple-channel mode. The multi-channel fiber photometry system would be a valuable tool for simultaneous recordings of population activities in different brain areas of a given animal and different interacting individuals.

  18. Active Integrated Filters for RF-Photonic Channelizers

    PubMed Central

    Nagdi, Amr El; Liu, Ke; LaFave, Tim P.; Hunt, Louis R.; Ramakrishna, Viswanath; Dabkowski, Mieczyslaw; MacFarlane, Duncan L.; Christensen, Marc P.

    2011-01-01

    A theoretical study of RF-photonic channelizers using four architectures formed by active integrated filters with tunable gains is presented. The integrated filters are enabled by two- and four-port nano-photonic couplers (NPCs). Lossless and three individual manufacturing cases with high transmission, high reflection, and symmetric couplers are assumed in the work. NPCs behavior is dependent upon the phenomenon of frustrated total internal reflection. Experimentally, photonic channelizers are fabricated in one single semiconductor chip on multi-quantum well epitaxial InP wafers using conventional microelectronics processing techniques. A state space modeling approach is used to derive the transfer functions and analyze the stability of these filters. The ability of adapting using the gains is demonstrated. Our simulation results indicate that the characteristic bandpass and notch filter responses of each structure are the basis of channelizer architectures, and optical gain may be used to adjust filter parameters to obtain a desired frequency magnitude response, especially in the range of 1–5 GHz for the chip with a coupler separation of ∼9 mm. Preliminarily, the measurement of spectral response shows enhancement of quality factor by using higher optical gains. The present compact active filters on an InP-based integrated photonic circuit hold the potential for a variety of channelizer applications. Compared to a pure RF channelizer, photonic channelizers may perform both channelization and down-conversion in an optical domain. PMID:22319352

  19. Mapping Episodic Stream Activity for the Ridgecrest Solar Power Project, Kern County, California

    NASA Astrophysics Data System (ADS)

    Thibodeaux-Yost, S. N.; Brady, R. H., III; Vyverberg, K.; Weinman, B.

    2013-12-01

    Large-scale renewable energy projects are being developed in the California desert region on large tracts of predominantly undeveloped land (total area of developed land for individual project sites vary from 327 acres to 8,230 acres). The absence of a standard method of identifying and accounting for episodic streams in arid and semi-arid (dryland) regions is an area of conflict between project developers and the government agencies responsible for protecting natural resources and permitting renewable energy projects. There is a need for an accurate dryland stream delineation protocol that is consistent, efficient, accessible, and accurately reflects the extent and distribution of streams on a site. Dryland stream delineation protocol based on a scientific, geomorphic and ecological understanding of dryland stream processes will help ensure dryland streams are accurately identified for the purposes of environmental impact assessments and project permitting. Such a method is currently being developed by the California Energy Commission (CEC) and the Department of Fish and Wildlife (CDFW). This thesis work critically evaluates the stream delineation and stream impact assessment previously completed by the developer for the proposed renewable energy project in El Paso Fan, El Paso Mountains, Ridgecrest, Kern County, California. This evaluation is then compared and contrasted with the results achieved in the field using the MESA (Mapping Episodic Stream Activity) stream delineation methods and protocols and mobile GIS mapping technology.

  20. Single Channel Activity from Ion Channels in Engineered Tethered Bilayer Membrane Arrays

    NASA Astrophysics Data System (ADS)

    Keizer, Henk; Fine, Daniel; K"{O}Per, Ingo; Anderson, Peter

    2005-11-01

    The demand for rapid in situ detection of chemical and biological analytes at high sensitivity has increased interest in the development of biosensors like the commercially available compact glucose sensor. Engineered membrane bound ion channels are promising biological receptors since they would allow for the stochastic detection of analytes at high sensitivity, they can be mutated to alter sensitivity, and they produce a well-defined read-out that is inherently suitable for digitization. In order to perform stochastic sensing it is necessary to be able to measure the ion currents associated with single ion channel opening and closing events. Although sensors based on supported bilayers containing various pore forming proteins have been described, none of these systems have recorded single channel activity. Here we describe the measurement of stochastic activity from synthetic single ion channels, based on the nicotinic acetylcholine receptor (nAChR) from Torpedo californica, inserted into individual pixels of a microelectrode array device. The limited size of the gold sense pad surface, 100x100 μm, and the electrical stability of the overlying lipid bilayer membrane make each pixel sensitive enough to measure single ion channel currents in the picoampere range.

  1. Recharge of shallow aquifers through two ephemeral-stream channels in northeastern Wyoming, 1982-1983

    USGS Publications Warehouse

    Lenfest, L.W.

    1987-01-01

    Quantifying the recharge from ephemeral streams to alluvial and bedrock aquifers will help evaluate the effects of surface mining on alluvial valley floors in Wyoming. Two stream reaches were chosen for study in the Powder River basin. One reach was located along the North Fork Dry Fork Cheyenne River near Glenrock, Wyoming, and the other reach was located along Black Thunder Creek near Hampshire, Wyoming. The reach along the North Fork Dry Fork Cheyenne River was instrumented with 3 gaging stations to measure streamflow and with 6 observation wells to measure groundwater level fluctuations in alluvial and bedrock aquifers in response to streamflow. The 3 streamflow gaging stations were located within the 2.5-mi study reach to measure the approximate gain or loss of discharge along the reach. Computed streamflow losses ranged from 0.43 acre-ft/mi on July 9 , 1982, to 1.44 acre-ft/mi on August 9, 1982. The observation wells completed only in the alluvial aquifer were dry during flow in the North Fork Dry Fork Cheyenne River, whereas water levels in half of the observation wells completed in the bedrock aquifers or the alluvial and bedrock aquifers rose in response to flow in the North Fork Dry Fork Cheyenne River. Groundwater recharge on August 9, 1982, was calculated using a convolution technique using groundwater levels at the upstream site and was estimated to be 26.5 acre-ft/mi. The reach along Black Thunder Creek was instrumented with one gaging station to measure streamflow and with 4 observation wells to measure water level response in alluvial and bedrock aquifers to streamflow. Recharge to the alluvial aquifer from flow in Black Thunder Creek ranged from 3.56 to 12.4 acre-ft/mi. The recharge was estimated using the convolution technique using water level measurements in the observation wells completed in the alluvial aquifer. Water level measurements in the observation wells indicated water level rises in the alluvial and bedrock aquifers in response to

  2. Regional Relations in Bankfull Channel Characteristics determined from flow measurements at selected stream-gaging stations in West Virginia, 1911-2002

    USGS Publications Warehouse

    Messinger, Terence; Wiley, Jeffrey B.

    2004-01-01

    Three bankfull channel characteristics?cross-sectional area, width, and depth?were significantly correlated with drainage area in regression equations developed for two regions in West Virginia. Channel characteristics were determined from analysis of flow measurements made at 74 U.S. Geological Survey stream-gaging stations at flows between 0.5 and 5.0 times bankfull flow between 1911 and 2002. Graphical and regression analysis were used to delineate an 'Eastern Region' and a 'Western Region,' which were separated by the boundary between the Appalachian Plateaus and Valley and Ridge Physiographic Provinces. Streams that drained parts of both provinces had channel characteristics typical of the Eastern Region, and were grouped with it. Standard error for the six regression equations, three for each region, ranged between 8.7 and 16 percent. Cross-sectional area and depth were greater relative to drainage area for the Western Region than they were for the Eastern Region. Regression equations were defined for streams draining between 46.5 and 1,619 square miles for the Eastern Region, and between 2.78 and 1,354 square miles for the Western Region. Stream-gaging stations with two or more cross sections where flow had been measured at flows between 0.5 and 5.0 times the 1.5-year flow showed poor replication of channel characteristics compared to the 95-percent confidence intervals of the regression, suggesting that within-reach variability for the stream-gaging stations may be substantial. A disproportionate number of the selected stream-gaging stations were on large (drainage area greater than 100 square miles) streams in the central highlands of West Virginia, and only one stream-gaging station that met data-quality criteria was available to represent the region within about 50 miles of the Ohio River north of Parkersburg, West Virginia. Many of the cross sections were at bridges, which can change channel shape. Although the data discussed in this report may not be

  3. Wildfire, channel disturbance, and stream temperature: spatio-temporal patterns and associations with the distribution of fish and amphibians in central Idaho

    NASA Astrophysics Data System (ADS)

    Dunham, J.; Luce, C.; Rosenberger, A.; Rieman, B.

    2005-12-01

    Temperature is a critical factor in stream ecosystems, and one that is altered by wildfire and related channel disturbances. In central Idaho streams, temperatures after wildfires may increase following loss of shade from riparian vegetation, and changes in channel structure that increase exposure to solar radiation and decreased hyporheic exchanges. To examine the spatio-temporal aspects temperature in relation to these influences, we employed three approaches: a long-term pre-post fire comparison of temperatures between a pair of streams, one burned and one unburned; a short-term pre-post fire comparison of a burned and unburned stream with spatially extensive data; and a short-term comparative study of spatial variability in temperatures using a space for time substitutive design. These three approaches provided key insights into the value of each study approach and revealed some expected and some surprising associations between temperature and occurrence of native trout and tailed frogs. The results of this work highlight the importance of spatio-temporal variability in study designs to quantify the effects of wildfire and disturbance on stream temperatures, and the implications of stream temperature for aquatic species in a broad landscape context.

  4. Object Recognition in Williams Syndrome: Uneven Ventral Stream Activation

    ERIC Educational Resources Information Center

    O'Hearn, Kirsten; Roth, Jennifer K.; Courtney, Susan M.; Luna, Beatriz; Street, Whitney; Terwillinger, Robert; Landau, Barbara

    2011-01-01

    Williams syndrome (WS) is a genetic disorder associated with severe visuospatial deficits, relatively strong language skills, heightened social interest, and increased attention to faces. On the basis of the visuospatial deficits, this disorder has been characterized primarily as a deficit of the dorsal stream, the occipitoparietal brain regions…

  5. Key stream/sediment exchanges of water and heat near stream mouths

    NASA Astrophysics Data System (ADS)

    Constantz, J. E.; Naranjo, R. C.; Niswonger, R. G.; Neilson, B. T.; Allander, K.; Zamora, C.; Smith, D. W.; Stonestrom, D. A.

    2014-12-01

    The section of stream discharging to a lake or other surface-water body is referred to as the stream mouth, a stream reach with rapidly changing hydrologic conditions, leading to unique aquatic and benthic ecology, as well as a visibly active fishery habitat. Of environmental significance, bridges, control structures, channelization and foot traffic are common near stream mouths, warranting comparisons of natural and channelized stream mouths. The present work completes the first investigation focusing specifically on the hydrology of surface-water/sediment exchanges at stream-mouth reaches discharging to lakes and compares these exchanges to those measured along the nearby shoreline in both a qualitative and quantitative manner. Heat and water exchanges for two common types of stream mouths (a natural stream with a summer barrier bar and a channelized stream mouth) are compared with comparable exchanges along the nearby shoreline on the north shore of Lake Tahoe located in the Central Sierra Nevada Mountain Range (CA/NV, US). The study site was selected partially due the abundance of streams discharging into the lake of both a natural and channelized nature (~30 small streams with a large number of both types of stream mouths). Heat and water exchanges were both qualitatively and quantitatively distinct for the three types of hydrologic settings, with (1) cool, low velocity, longitudinal (hyporheic) flowpaths observed below the channelized stream mouth, discharging beneath the warmer, more buoyant lakeshore water, (2) the nearby shoreline receiving relatively warm, higher velocity discharge and (3) for the natural stream mouth, there was strong diurnal temperature pattern in groundwater discharging through the seasonal barrier beach to the lake. Impacts of strong 2013 wave action on exchanges were also distinct for the three settings, with (1) channelization allowing waves to extend well upstream, (2) a lesser invasive impact in the shoreline swash zone exchanges

  6. Scour and fill in a stream channel, East Fork River, western Wyoming

    USGS Publications Warehouse

    Andrews, Edmund D.

    1978-01-01

    Frequent soundings of 11 cross sections located on the East Fork River, western Wyoming, during a spring flood revealed two sequences of channel scour and fill. All sections either scoured or filled at the flood crests relative to their low-flow condition. The sections which scoured at high flow (called scouring sections) generally tended to fill at low flow. Conversely, the sections which filled at high flow (called filling sections) generally tended to scour at low flow. The critical discharge at which the character of a section changed from scouring to filling or vice versa was approximately the bankfull discharge. Therefore, at any discharge except bankfull, some sections were accumulating bed material (fill), while others were being depleted of bed material (scour). (Woodard-USGS)

  7. Selective activation of mechanosensitive ion channels using magnetic particles.

    PubMed

    Hughes, Steven; McBain, Stuart; Dobson, Jon; El Haj, Alicia J

    2008-08-01

    This study reports the preliminary development of a novel magnetic particle-based technique that permits the application of highly localized mechanical forces directly to specific regions of an ion-channel structure. We demonstrate that this approach can be used to directly and selectively activate a mechanosensitive ion channel of interest, namely TREK-1. It is shown that manipulation of particles targeted against the extended extracellular loop region of TREK-1 leads to changes in whole-cell currents consistent with changes in TREK-1 activity. Responses were absent when particles were coated with RGD (Arg-Gly-Asp) peptide or when magnetic fields were applied in the absence of magnetic particles. It is concluded that changes in whole-cell current are the result of direct force application to the extracellular loop region of TREK-1 and thus these results implicate this region of the channel structure in mechano-gating. It is hypothesized that the extended loop region of TREK-1 may act as a tension spring that acts to regulate sensitivity to mechanical forces, in a nature similar to that described for MscL. The development of a technique that permits the direct manipulation of mechanosensitive ion channels in real time without the need for pharmacological drugs has huge potential benefits not only for basic biological research of ion-channel gating mechanisms, but also potentially as a tool for the treatment of human diseases caused by ion-channel dysfunction.

  8. Activation of peripheral KCNQ channels relieves gout pain

    PubMed Central

    Zheng, Yueming; Xu, Haiyan; Zhan, Li; Zhou, Xindi; Chen, Xueqin; Gao, Zhaobing

    2015-01-01

    Abstract Intense inflammatory pain caused by urate crystals in joints and other tissues is a major symptom of gout. Among therapy drugs that lower urate, benzbromarone (BBR), an inhibitor of urate transporters, is widely used because it is well tolerated and highly effective. We demonstrate that BBR is also an activator of voltage-gated KCNQ potassium channels. In cultured recombinant cells, BBR exhibited significant potentiation effects on KCNQ channels comparable to previously reported classical activators. In native dorsal root ganglion neurons, BBR effectively overcame the suppression of KCNQ currents, and the resultant neuronal hyperexcitability caused by inflammatory mediators, such as bradykinin (BK). Benzbromarone consistently attenuates BK-, formalin-, or monosodium urate–induced inflammatory pain in rat and mouse models. Notably, the analgesic effects of BBR are largely mediated through peripheral and not through central KCNQ channels, an observation supported both by pharmacokinetic studies and in vivo experiments. Moreover, multiple residues in the superficial part of the voltage sensing domain of KCNQ channels were identified critical for the potentiation activity of BBR by a molecular determinant investigation. Our data indicate that activation of peripheral KCNQ channels mediates the pain relief effects of BBR, potentially providing a new strategy for the development of more effective therapies for gout. PMID:25735002

  9. Na(+) -Activated K(+) Channels in Rat Supraoptic Neurones.

    PubMed

    Bansal, V; Fisher, T E

    2016-06-01

    The magnocellular neurosecretory cells (MNCs) of the hypothalamus secrete the neurohormones vasopressin and oxytocin. The systemic release of these hormones depends on the rate and pattern of MNC firing and it is therefore important to identify the ion channels that contribute to the electrical behaviour of MNCs. In the present study, we report evidence for the presence of Na(+) -activated K(+) (KN a ) channels in rat MNCs. KN a channels mediate outwardly rectifying K(+) currents activated by the increases in intracellular Na(+) that occur during electrical activity. Although the molecular identity of native KN a channels is unclear, their biophysical properties are consistent with those of expressed Slick (slo 2.1) and Slack (slo 2.2) proteins. Using immunocytochemistry and Western blot experiments, we found that both Slick and Slack proteins are expressed in rat MNCs. Using whole cell voltage clamp techniques on acutely isolated rat MNCs, we found that inhibiting Na(+) influx by the addition of the Na(+) channel blocker tetrodotoxin or the replacement of Na(+) in the external solution with Li(+) caused a significant decrease in sustained outward currents. Furthermore, the evoked outward current density was significantly higher in rat MNCs using patch pipettes containing 60 mm Na(+) than it was when patch pipettes containing 0 mm Na(+) were used. Our data show that functional KN a channels are expressed in rat MNCs. These channels could contribute to the activity-dependent afterhyperpolarisations that have been identified in the MNCs and thereby play a role in the regulation of their electrical behaviour. PMID:27091544

  10. Heterogeneity of Calcium Channel/cAMP-Dependent Transcriptional Activation.

    PubMed

    Kobrinsky, Evgeny

    2015-01-01

    The major function of the voltage-gated calcium channels is to provide the Ca(2+) flux into the cell. L-type voltage-gated calcium channels (Cav1) serve as voltage sensors that couple membrane depolarization to many intracellular processes. Electrical activity in excitable cells affects gene expression through signaling pathways involved in the excitation-transcription (E-T) coupling. E-T coupling starts with activation of the Cav1 channel and results in initiation of the cAMP-response element binding protein (CREB)-dependent transcription. In this review we discuss the new quantitative approaches to measuring E-T signaling events. We describe the use of wavelet transform to detect heterogeneity of transcriptional activation in nuclei. Furthermore, we discuss the properties of discovered microdomains of nuclear signaling associated with the E-T coupling and the basis of the frequency-dependent transcriptional regulation.

  11. Channel adjustment of an unstable coarse-grained stream: Opposing trends of boundary and critical shear stress, and the applicability of extremal hypotheses

    USGS Publications Warehouse

    Simon, A.; Thorne, C.R.

    1996-01-01

    Channel adjustments in the North Fork Toutle River and the Toutle River main stem were initiated by deposition of a 2.5km3 debris avalanche and associated lahars that accompanied the catastrophic eruption of Mount St. Helens, Washington on 18 May 1980. Channel widening was the dominant process. In combination, adjustments caused average boundary shear stress to decrease non-linearly with time and critical shear stress to increase non-linearly with time. At the discharge that is equalled or exceeded 1 per cent of the time, these trends converged by 1991-1992 so that excess shear stress approached minimum values. Extremal hypotheses, such as minimization of unit stream power and minimization of the rate of energy dissipation (minimum stream power), are shown to be applicable to dynamic adjustments of the Toutle River system. Maximization of the Darcy-Weisbach friction factor did not occur, but increases in relative bed roughness, caused by the concomitant reduction in hydraulic depths and bed-material coarsening, were documented. Predictions of stable channel geometries using the minimum stream power approach were unsuccessful when compared to the 1991-1992 geometries and bed-material characteristics measured in the field. It is concluded that the predictions are not applicable because the study reaches are not truly stable and cannot become so until a new floodplain has been formed by renewed channel incision, retreat of stream-side hummocks, and establishment of riparian vegetation to limit the destabilizing effects of large floods. Further, prediction of energy slope (and consequently stream power) by the sediment transport equations is inaccurate because of the inability of the equations to account for significant contributions of finer grained (sand and gravel) bank materials (relative to the coarsened channel bed) from bank retreat and from upstream terrace erosion.

  12. Detecting channel riparian vegetation response to best-management-practices implementation in ephemeral streams with the use of spot high-resolution visible imagery

    USGS Publications Warehouse

    Kamp, Kendall Vande; Rigge, Matthew B.; Troelstrup, Nels H.; Smart, Alexander J.; Wylie, Bruce

    2013-01-01

    Heavily grazed riparian areas are commonly subject to channel incision, a lower water table, and reduced vegetation, resulting in sediment delivery above normal regimes. Riparian and in-channel vegetation functions as a roughness element and dissipates flow energy, maintaining stable channel geometry. Ash Creek, a tributary of the Bad River in western South Dakota contains a high proportion of incised channels, remnants of historically high grazing pressure. Best management practices (BMP), including off-stream watering sources and cross fencing, were implemented throughout the Bad River watershed during an Environmental Protection Agency (EPA) 319 effort to address high sediment loads. We monitored prairie cordgrass (Spartina pectinata Link) establishment within stream channels for 16 yr following BMP implementation. Photos were used to group stream reaches (n = 103) subjectively into three classes; absent (estimated  40% cover; n = 16) based on the relative amount of prairie cordgrass during 2010 assessments of ephemeral channels. Reaches containing drainage areas of 0.54 to 692 ha were delineated with the use of 2010 National Agriculture Imagery Program (NAIP) imagery. Normalized difference vegetation index (NDVI) values were extracted from 5 to 39 sample points proportional to reach length using a series of Satellite Pour l'Observation de la Terre (SPOT) satellite imagery. Normalized NDVI (nNDVI) of 2 152 sample points were determined from pre- and post-BMP images. Mean nNDVI values for each reach ranged from 0.33 to 1.77. ANOVA revealed significant increase in nNDVI in locations classified as present prairie cordgrass cover following BMP implementation. Establishment of prairie cordgrass following BMP implementation was successfully detected remotely. Riparian vegetation such as prairie cordgrass adds channel roughness that reduces the flow energy responsible for channel degradation.

  13. Post-Eruption Changes in Channel Geometry of Streams in the Toutle River Drainage Basin, 1980-82, Mount St. Helens, Washington

    USGS Publications Warehouse

    Meyer, D.F.; Nolan, K. Michael; Dodge, J.E.

    1985-01-01

    The May 18, 1980, eruption of Mount St. Helens, Washington, generated a debris avalanche, lateral blast, lahars, and tephra deposits that altered mainstem and tributary channels within the Toutle River drainage basin. Channel cross sections were monumented and surveyed on North Fork Toutle River and its tributaries, on South Fork Toutle River, on Green River, and on Toutle River in 1980 and 1981. These streams drain the north and west flanks of the volcano. The network of channel cross sections was surveyed more frequently following periods of higher flow. The repetitive cross-section surveys provide measurements of bank erosion or accretion and of channel erosion or aggradation. These data can be used to determine erosion rates, and to identify sources and storage sites of sediment in sediment budget computations. This report presents channel cross-section profiles constructed from the survey data collected during water years 1980 through 1982.

  14. Active Brownian particles escaping a channel in single file.

    PubMed

    Locatelli, Emanuele; Baldovin, Fulvio; Orlandini, Enzo; Pierno, Matteo

    2015-02-01

    Active particles may happen to be confined in channels so narrow that they cannot overtake each other (single-file conditions). This interesting situation reveals nontrivial physical features as a consequence of the strong interparticle correlations developed in collective rearrangements. We consider a minimal two-dimensional model for active Brownian particles with the aim of studying the modifications introduced by activity with respect to the classical (passive) single-file picture. Depending on whether their motion is dominated by translational or rotational diffusion, we find that active Brownian particles in single file may arrange into clusters that are continuously merging and splitting (active clusters) or merely reproduce passive-motion paradigms, respectively. We show that activity conveys to self-propelled particles a strategic advantage for trespassing narrow channels against external biases (e.g., the gravitational field).

  15. Active Brownian particles escaping a channel in single file

    NASA Astrophysics Data System (ADS)

    Locatelli, Emanuele; Baldovin, Fulvio; Orlandini, Enzo; Pierno, Matteo

    2015-02-01

    Active particles may happen to be confined in channels so narrow that they cannot overtake each other (single-file conditions). This interesting situation reveals nontrivial physical features as a consequence of the strong interparticle correlations developed in collective rearrangements. We consider a minimal two-dimensional model for active Brownian particles with the aim of studying the modifications introduced by activity with respect to the classical (passive) single-file picture. Depending on whether their motion is dominated by translational or rotational diffusion, we find that active Brownian particles in single file may arrange into clusters that are continuously merging and splitting (active clusters) or merely reproduce passive-motion paradigms, respectively. We show that activity conveys to self-propelled particles a strategic advantage for trespassing narrow channels against external biases (e.g., the gravitational field).

  16. Is in-stream macrophyte growth predictable and what are its impacts on channel-averaged flow characteristics?

    NASA Astrophysics Data System (ADS)

    Jordan, David N.; Thomas, Robert E.; Keevil, Gareth M.; Parsons, Daniel R.; Hardy, Richard J.

    2016-04-01

    Understanding how the growth of aquatic vegetation impacts stage-discharge coupling is vital for river management planning. This study presents an annual record of monthly spatial distribution surveys of the in-stream macrophyte Ranunculus penicillatus coupled with channel form and flow velocity measurements, within a 50 m-long reach of a gravel-bed river. Whereas stage has varied by up to 0.4 m, there has been little change in channel form over the monitoring period (ongoing since 23/07/2014). Macrophyte growth continued from the start of the monitoring period until October 2014 when mean patch area was 6.74 m2, and then decreased throughout a decay phase until January 2015 when mean patch area was 1.12 m2. There was a 75.2% loss of macrophyte surface area between October 2014 and January 2015. The largest patches that remained in January 2015 continued to decay until February. Conversely, new macrophyte patches also began to recolonize the channel during this time. To our knowledge, this is the first evidence of a transition period during which aquatic vegetation is in both decay and recolonization phases simultaneously. In total 69% of patches present in January exhibited regrowth without further decay to form a base for recolonization. Therefore, the spatial distribution of macrophyte patches could be determined to be somewhat persistent. Despite this, due to several different growth factors, there are recognisable differences in both macrophyte patch shape and distribution when comparing data from July 2014 and July 2015, emphasising the unpredictability of macrophyte growth. The decay period of the Ranunculus p. coincided with seasonal high discharges in this catchment. Discharge remained high from January until March 2015, but then began to decrease, reflecting annual peaks in historical records for the study area. Large discharge variations were not matched by a large stage range. Displacement of water by vegetation growth maintained the stage height when

  17. Sodium channel activation mechanisms. Insights from deuterium oxide substitution

    SciTech Connect

    Alicata, D.A.; Rayner, M.D.; Starkus, J.G. )

    1990-04-01

    Schauf and Bullock, using Myxicola giant axons, demonstrated that solvent substitution with deuterium oxide (D2O) significantly affects both sodium channel activation and inactivation kinetics without corresponding changes in gating current or tail current rates. They concluded that (a) no significant component of gating current derives from the final channel opening step, and (b) channels must deactivate (during tail currents) by a different pathway from that used in channel opening. By contrast, Oxford found in squid axons that when a depolarizing pulse is interrupted by a brief (approximately 100 microseconds) return to holding potential, subsequent reactivation (secondary activation) is very rapid and shows almost monoexponential kinetics. Increasing the interpulse interval resulted in secondary activation rate returning towards control, sigmoid (primary activation) kinetics. He concluded that channels open and close (deactivate) via the same pathway. We have repeated both sets of observations in crayfish axons, confirming the results obtained in both previous studies, despite the apparently contradictory conclusions reached by these authors. On the other hand, we find that secondary activation after a brief interpulse interval (50 microseconds) is insensitive to D2O, although reactivation after longer interpulse intervals (approximately 400 microseconds) returns towards a D2O sensitivity similar to that of primary activation. We conclude that D2O-sensitive primary activation and D2O-insensitive tail current deactivation involve separate pathways. However, D2O-insensitive secondary activation involves reversal of the D2O-insensitive deactivation step. These conclusions are consistent with parallel gate models, provided that one gating particle has a substantially reduced effective valence.

  18. River Elongation as a Proxy for Lateral Channel Activity

    NASA Astrophysics Data System (ADS)

    Lauer, J. W.

    2009-12-01

    Lateral channel movement is a process that is tightly linked to both channel hydraulics and sediment transport, strongly influences floodplain ecology, and also has great relevance for banktop property owners. The correlation between channel migration rate and channel curvature usually causes meandering river channels to elongate as they migrate laterally. Over the long term, the increase in sinuosity is compensated by a rapid decrease in sinuosity where and when river bends shorten through cutoff processes. However, the elongation for most meander bends in systems free to migrate across wide floodplains often occurs relatively uniformly throughout the system. Consequently, the rate of elongation of individual river bends, integrated across a river reach, offers a simple mechanism for characterizing the reach’s lateral activity. Spatial series of accumulated elongation can also be used to delineate reaches with similar properties. We use aerial imagery pairs to compare rates of lateral channel centerline shifting with channel centerline elongation for reaches many bends long along eight different rivers with widths ranging from 12 to 584 m. Except where bends translate downstream without changing form, elongation rates are closely linked to lateral shifting. In several cases, a change in elongation rate corresponds closely with a change in channel width, discharge, and/or bed material. For reaches free to migrate across a wide, unconfined floodplain and where lateral migration measurements are likely of high quality, the average ratio between the reach average migration rate normalized by channel width and the rate of sinuosity increase (excluding bends that experienced a cutoff between imagery dates) is approximately 5.6. Since elongation rate measurements can be made accurately even from photos that are poorly aligned, the relationship between sinuosity increase and lateral migration potentially provides a means of bypassing time-consuming georeferencing

  19. Performance of an open limestone channel for treating a stream affected by acid rock drainage (León, Spain).

    PubMed

    Santofimia, Esther; López-Pamo, Enrique

    2016-07-01

    The generation of acid rock drainage (ARD) was observed after the oxidation dissolution of pyrite-rich black shales, which were excavated during the construction of a highway in León (Spain). ARDs are characterized by the presence of high concentrations of sulfate and metals (Al, Fe, Mn, Zn, Cu, Co, Ni, Th, and U) that affect the La Silva stream. Dissolved element concentrations showed values between one and four orders of magnitude higher than those of natural waters of this area. A passive treatment system was constructed; the aim of which was to improve the quality of the water of the stream. This work provides a hydrochemical characterization of the La Silva stream after its transit through the different elements that constitute the passive treatment system (open limestone channel (OLC), small ponds, and a wetland), during its first year of operation. The passive treatment system has two sections separated by a tunnel 230 m long. The first section, which stretches between the highway and the tunnel entrance, is an OLC 350 m long with a slope of 16 %. The second section, which stretches from the tunnel exit to the end wetland, has a length of 700 m and a slope of 6 %; it is in this section where six small ponds are located. In the first section of this passive treatment system, the OLC was effectively increasing the pH from 3 to 4-4.5 and eliminating all of the dissolved Fe and the partially dissolved Al. These elements, after hydrolysis at a pH 3-3.5 and 4-4.5, respectively, had precipitated as schwertmannite and hydrobasaluminite, while other dissolved metals were removed totally or partially for adsorption by the precipitates and/or by coprecipitation. The second section receives different inputs of water such as ARDs and natural waters. After exiting the treatment system, the stream is buffered by Al at a pH of 4-4.3, showing high Al concentrations (19-101 mg/L) but with a complete removal of dissolved Fe. Unfortunately, the outflow shows similar or

  20. Performance of an open limestone channel for treating a stream affected by acid rock drainage (León, Spain).

    PubMed

    Santofimia, Esther; López-Pamo, Enrique

    2016-07-01

    The generation of acid rock drainage (ARD) was observed after the oxidation dissolution of pyrite-rich black shales, which were excavated during the construction of a highway in León (Spain). ARDs are characterized by the presence of high concentrations of sulfate and metals (Al, Fe, Mn, Zn, Cu, Co, Ni, Th, and U) that affect the La Silva stream. Dissolved element concentrations showed values between one and four orders of magnitude higher than those of natural waters of this area. A passive treatment system was constructed; the aim of which was to improve the quality of the water of the stream. This work provides a hydrochemical characterization of the La Silva stream after its transit through the different elements that constitute the passive treatment system (open limestone channel (OLC), small ponds, and a wetland), during its first year of operation. The passive treatment system has two sections separated by a tunnel 230 m long. The first section, which stretches between the highway and the tunnel entrance, is an OLC 350 m long with a slope of 16 %. The second section, which stretches from the tunnel exit to the end wetland, has a length of 700 m and a slope of 6 %; it is in this section where six small ponds are located. In the first section of this passive treatment system, the OLC was effectively increasing the pH from 3 to 4-4.5 and eliminating all of the dissolved Fe and the partially dissolved Al. These elements, after hydrolysis at a pH 3-3.5 and 4-4.5, respectively, had precipitated as schwertmannite and hydrobasaluminite, while other dissolved metals were removed totally or partially for adsorption by the precipitates and/or by coprecipitation. The second section receives different inputs of water such as ARDs and natural waters. After exiting the treatment system, the stream is buffered by Al at a pH of 4-4.3, showing high Al concentrations (19-101 mg/L) but with a complete removal of dissolved Fe. Unfortunately, the outflow shows similar or

  1. Detection of single ion channel activity with carbon nanotubes

    PubMed Central

    Zhou, Weiwei; Wang, Yung Yu; Lim, Tae-Sun; Pham, Ted; Jain, Dheeraj; Burke, Peter J.

    2015-01-01

    Many processes in life are based on ion currents and membrane voltages controlled by a sophisticated and diverse family of membrane proteins (ion channels), which are comparable in size to the most advanced nanoelectronic components currently under development. Here we demonstrate an electrical assay of individual ion channel activity by measuring the dynamic opening and closing of the ion channel nanopores using single-walled carbon nanotubes (SWNTs). Two canonical dynamic ion channels (gramicidin A (gA) and alamethicin) and one static biological nanopore (α-hemolysin (α-HL)) were successfully incorporated into supported lipid bilayers (SLBs, an artificial cell membrane), which in turn were interfaced to the carbon nanotubes through a variety of polymer-cushion surface functionalization schemes. The ion channel current directly charges the quantum capacitance of a single nanotube in a network of purified semiconducting nanotubes. This work forms the foundation for a scalable, massively parallel architecture of 1d nanoelectronic devices interrogating electrophysiology at the single ion channel level. PMID:25778101

  2. Detection of single ion channel activity with carbon nanotubes.

    PubMed

    Zhou, Weiwei; Wang, Yung Yu; Lim, Tae-Sun; Pham, Ted; Jain, Dheeraj; Burke, Peter J

    2015-01-01

    Many processes in life are based on ion currents and membrane voltages controlled by a sophisticated and diverse family of membrane proteins (ion channels), which are comparable in size to the most advanced nanoelectronic components currently under development. Here we demonstrate an electrical assay of individual ion channel activity by measuring the dynamic opening and closing of the ion channel nanopores using single-walled carbon nanotubes (SWNTs). Two canonical dynamic ion channels (gramicidin A (gA) and alamethicin) and one static biological nanopore (α-hemolysin (α-HL)) were successfully incorporated into supported lipid bilayers (SLBs, an artificial cell membrane), which in turn were interfaced to the carbon nanotubes through a variety of polymer-cushion surface functionalization schemes. The ion channel current directly charges the quantum capacitance of a single nanotube in a network of purified semiconducting nanotubes. This work forms the foundation for a scalable, massively parallel architecture of 1d nanoelectronic devices interrogating electrophysiology at the single ion channel level.

  3. Detection of single ion channel activity with carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Zhou, Weiwei; Wang, Yung Yu; Lim, Tae-Sun; Pham, Ted; Jain, Dheeraj; Burke, Peter J.

    2015-03-01

    Many processes in life are based on ion currents and membrane voltages controlled by a sophisticated and diverse family of membrane proteins (ion channels), which are comparable in size to the most advanced nanoelectronic components currently under development. Here we demonstrate an electrical assay of individual ion channel activity by measuring the dynamic opening and closing of the ion channel nanopores using single-walled carbon nanotubes (SWNTs). Two canonical dynamic ion channels (gramicidin A (gA) and alamethicin) and one static biological nanopore (α-hemolysin (α-HL)) were successfully incorporated into supported lipid bilayers (SLBs, an artificial cell membrane), which in turn were interfaced to the carbon nanotubes through a variety of polymer-cushion surface functionalization schemes. The ion channel current directly charges the quantum capacitance of a single nanotube in a network of purified semiconducting nanotubes. This work forms the foundation for a scalable, massively parallel architecture of 1d nanoelectronic devices interrogating electrophysiology at the single ion channel level.

  4. Direct activation of cardiac pacemaker channels by intracellular cyclic AMP.

    PubMed

    DiFrancesco, D; Tortora, P

    1991-05-01

    Cyclic AMP acts as a second messenger in the modulation of several ion channels that are typically controlled by a phosphorylation process. In cardiac pacemaker cells, adrenaline and acetylcholine regulate the hyperpolarization-activated current (if), but in opposite ways; this current is involved in the generation and modulation of pacemaker activity. These actions are mediated by cAMP and underlie control of spontaneous rate by neurotransmitters. Whether the cAMP modulation of if is mediated by channel phosphorylation is, however, still unknown. Here we investigate the action of cAMP on if in excised patches of cardiac pacemaker cells and find that cAMP activates if by a mechanism independent of phosphorylation, involving a direct interaction with the channels at their cytoplasmic side. Cyclic AMP activates if by shifting its activation curve to more positive voltages, in agreement with whole-cell results. This is the first evidence of an ion channel whose gating is dually regulated by voltage and direct cAMP binding.

  5. Physiological mechanisms for the modulation of pannexin 1 channel activity

    PubMed Central

    Sandilos, Joanna K; Bayliss, Douglas A

    2012-01-01

    It is widely recognized that ATP, along with other nucleotides, subserves important intercellular signalling processes. Among various nucleotide release mechanisms, the relatively recently identified pannexin 1 (Panx1) channel is gaining prominence by virtue of its ability to support nucleotide permeation and release in a variety of different tissues. Here, we review recent advances in our understanding of the factors that control Panx1 channel activity. By using electrophysiological and biochemical approaches, diverse mechanisms that dynamically regulate Panx1 channel function have been identified in various settings; these include, among others, activation by caspase-mediated channel cleavage in apoptotic immune cells, by G protein-coupled receptors in vascular smooth muscle, by low oxygen tension in erythrocytes and neurons, by high extracellular K+ in various cell types and by stretch/strain in airway epithelia. Delineating the distinct mechanisms of Panx1 modulation that prevail in different physiological contexts provides the possibility that these channels, and ATP release, could ultimately be targeted in a context-dependent manner. PMID:23070703

  6. Biogeochemistry and Hydrology in Streams Impacted by Legacy Sediments and Urbanization: Implications for Stream Restoration

    EPA Science Inventory

    The groundwater–surface water interface, consisting of shallow groundwater adjacent to stream channels, is a hot spot for nitrogen removal processes, a storage zone for other solutes, and a target for restoration activities. Characterizing groundwater-surface water interac...

  7. Stretch-Activated Ion Channels: What Are They?

    PubMed Central

    Sachs, Frederick

    2010-01-01

    Mechanosensitive ion channels (MSCs) exist in all cells, but mechanosensitivity is a phenotype not a genotype. Specialized mechanoreceptors such as the hair cells of the cochlea require elaborate mechanical impedance matching to couple the channels to the external stress. In contrast, MSCs in nonspecialized cells appear activated by stress in the bilayer local to the channel—within about three lipids. Local mechanical stress can be produced by far-field tension, amphipaths, phase separations, the cytoskeleton, the extracellular matrix, and the adhesion energy between the membrane and a patch pipette. Understanding MSC function requires understanding the stimulus. PMID:20134028

  8. Lipid bilayer array for simultaneous recording of ion channel activities

    NASA Astrophysics Data System (ADS)

    Hirano-Iwata, Ayumi; Nasu, Tomohiro; Oshima, Azusa; Kimura, Yasuo; Niwano, Michio

    2012-07-01

    This paper describes an array of stable and reduced-solvent bilayer lipid membranes (BLMs) formed in microfabricated silicon chips. BLMs were first vertically formed simultaneously and then turned 90° in order to realize a horizontal BLM array. Since the present BLMs are mechanically stable and robust, the BLMs survive this relatively tough process. Typically, a ˜60% yield in simultaneous BLM formation over 9 sites was obtained. Parallel recordings of gramicidin channel activities from different BLMs were demonstrated. The present system has great potential as a platform of BLM-based high throughput drug screening for ion channel proteins.

  9. MWSA's physical habitat approach - combining knowledge of habitat requirements with mechanisms of geomorphic and anthropogenic influence on stream channel form

    EPA Science Inventory

    Effective environmental policy decisions benefit from stream habitat information that is accurate, precise, and relevant. The recent National Wadeable Streams Assessment (NWSA) carried out by the U.S. EPA required physical habitat information sufficiently comprehensive to facilit...

  10. Patterned electrical activity modulates sodium channel expression in sensory neurons.

    PubMed

    Klein, Joshua P; Tendi, Elisabetta A; Dib-Hajj, Sulayman D; Fields, R Douglas; Waxman, Stephen G

    2003-10-15

    Peripheral nerve injury induces changes in the level of gene expression for sodium channels Nav1.3, Nav1.8, and Nav1.9 within dorsal root ganglion (DRG) neurons, which may contribute to the development of hyperexcitability, ectopic neuronal discharge, and neuropathic pain. The mechanism of this change in sodium channel expression is unclear. Decreased availability of neurotrophic factors following axotomy contributes to these changes in gene transcription, but the question of whether changes in intrinsic neuronal activity levels alone can trigger changes in the expression of these sodium channels has not been addressed. We examined the effect of electrical stimulation on the expression of Nav1.3, Nav1.8, and Nav1.9 by using cultured embryonic mouse sensory neurons under conditions in which nerve growth factor (NGF) was not limiting. Expression of Nav1.3 was not significantly changed following stimulation. In contrast, we observed activity-dependent down-regulation of Nav1.8 and Nav1.9 mRNA and protein levels after stimulation, as demonstrated by quantitative polymerase chain reaction and immunocytochemistry. These results show that a change in neuronal activity can alter the expression of sodium channel genes in a subtype-specific manner, via a mechanism independent of NGF withdrawal. PMID:14515348

  11. Computational study of a calcium release-activated calcium channel

    NASA Astrophysics Data System (ADS)

    Talukdar, Keka; Shantappa, Anil

    2016-05-01

    The naturally occurring proteins that form hole in membrane are commonly known as ion channels. They play multiple roles in many important biological processes. Deletion or alteration of these channels often leads to serious problems in the physiological processes as it controls the flow of ions through it. The proper maintenance of the flow of ions, in turn, is required for normal health. Here we have investigated the behavior of a calcium release-activated calcium ion channel with pdb entry 4HKR in Drosophila Melanogaster. The equilibrium energy as well as molecular dynamics simulation is performed first. The protein is subjected to molecular dynamics simulation to find their energy minimized value. Simulation of the protein in the environment of water and ions has given us important results too. The solvation energy is also found using Charmm potential.

  12. Morphological Analyses and Simulated Flood Elevations in a Watershed with Dredged and Leveed Stream Channels, Wheeling Creek, Eastern Ohio

    USGS Publications Warehouse

    Sherwood, James M.; Huitger, Carrie A.; Ebner, Andrew D.; Koltun, G.F.

    2008-01-01

    The USGS, in cooperation with the Ohio Emergency Management Agency, conducted a study in the Wheeling Creek Basin to (1) evaluate and contrast land-cover characteristics from 2001 with characteristics from 1979 and 1992; (2) compare current streambed elevation, slope, and geometry with conditions present in the late 1980s; (3) look for evidence of channel filling and over widening in selected undredged reaches; (4) estimate flood elevations for existing conditions in both undredged and previously dredged reaches; (5) evaluate the height of the levees required to contain floods with selected recurrence intervals in previously dredged reaches; and (6) estimate flood elevations for several hypothetical dredging and streambed aggradation scenarios in undredged reaches. The amount of barren land in the Wheeling Creek watershed has decreased from 20 to 1 percent of the basin area based on land-cover characteristics from 1979 and 2001. Barren lands appear to have been converted primarily to pasture, presumably as a result of surface-mine reclamation. Croplands also decreased from 13 to 8 percent of the basin area. The combined decrease in barren lands and croplands is approximately offset by the increase in pasture. Stream-channel surveys conducted in 1987 and again in 2006 at 21 sites in four previously dredged reaches of Wheeling Creek indicate little change in the elevation, slope, and geometry of the channel at most sites. The mean change in width-averaged bed and thalweg elevations for the 21 cross sections was 0.1 feet. Bankfull widths, mean depths, and cross-sectional areas measured at 12 sites in undredged reaches were compared to estimates determined from regional equations. The mean percentage difference between measured and estimated bankfull widths was -0.2 percent, suggesting that bankfull widths in the Wheeling Creek Basin are generally about the same as regional averages for undisturbed basins of identical drainage area. For bankfull mean depth and cross

  13. Combined single channel and single molecule detection identifies subunit composition of STIM1-activated transient receptor potential canonical (TRPC) channels.

    PubMed

    Asanov, Alexander; Sampieri, Alicia; Moreno, Claudia; Pacheco, Jonathan; Salgado, Alfonso; Sherry, Ryan; Vaca, Luis

    2015-01-01

    Depletion of intracellular calcium ion stores initiates a rapid cascade of events culminating with the activation of the so-called Store-Operated Channels (SOC) at the plasma membrane. Calcium influx via SOC is essential in the initiation of calcium-dependent intracellular signaling and for the refilling of internal calcium stores, ensuring the regeneration of the signaling cascade. In spite of the significance of this evolutionary conserved mechanism, the molecular identity of SOC has been the center of a heated controversy spanning over the last 20 years. Initial studies positioned some members of the transient receptor potential canonical (TRPC) channel superfamily of channels (with the more robust evidence pointing to TRPC1) as a putative SOC. Recent evidence indicates that Stromal Interacting Molecule 1 (STIM1) activates some members from the TRPC family of channels. However, the exact subunit composition of TRPC channels remains undetermined to this date. To identify the subunit composition of STIM1-activated TRPC channels, we developed novel method, which combines single channel electrophysiological measurements based on the patch clamp technique with single molecule fluorescence imaging. We termed this method Single ion Channel Single Molecule Detection technique (SC-SMD). Using SC-SMD method, we have obtained direct evidence of the subunit composition of TRPC channels activated by STIM1. Furthermore, our electrophysiological-imaging SC-SMD method provides evidence at the molecular level of the mechanism by which STIM1 and calmodulin antagonize to modulate TRPC channel activity.

  14. Microbial activity and biogeochemical cycling in first-order Russian Arctic streams

    NASA Astrophysics Data System (ADS)

    Rhoades, R. E.; Lynch, L. M.; Ortega, J. C.; Holmes, R. M.; Mann, P. J.; Vonk, J. E.; Schade, J. D.

    2011-12-01

    Global climate change is strongly impacting Arctic ecosystems and is predicted to lead to thawing of permafrost soils. These soils are rich in organic matter and other nutrients and influence biogeochemical cycling in terrestrial and aquatic ecosystems. Small arctic streams are likely to be the first aquatic ecosystems to receive materials exported as soils warm. These first-order streams are characterized by strong interactions between the water column and stream bottom and have the potential to affect nutrient flux. Previous studies suggest that phosphorous availability limits biological productivity in many first-order arctic streams, however, they remain understudied, particularly in the Russian Arctic. Our objective was to assess microbial activity and biogeochemical cycling among arctic streams. We used three approaches to meet our objectives, including a survey of 9 streams, intensive longitudinal sampling in 5 streams, and nutrient pulse addition experiments in 4 streams, designed to assess the potential for limitation by N or P. We measured pH, temperature, dissolved oxygen, NH4, SRP, DOC, and TDN at all sampling sites. We also conducted biological oxygen demand (BOD) incubations designed to assess DOC lability, and correlated these measurements with background nutrient concentrations. We found a strong positive linear correlation between BOD and phosphate concentration, suggesting P limitation of production and/or consumption of labile DOC. To complement ambient stream measurements, we conducted whole stream nutrient addition experiments to calculate N and P uptake lengths, which we then used to infer whether N or P is more likely to limit biological processes, and the degree of coupling between N and P cycling. Results from the nutrient addition experiments suggest both N and P limitation among streams depending on stream location and characteristics. In addition, these experiments suggest a significant, but complex interaction between N and P cycles

  15. Activation and inhibition of TMEM16A calcium-activated chloride channels.

    PubMed

    Ni, Yu-Li; Kuan, Ai-Seon; Chen, Tsung-Yu

    2014-01-01

    Calcium-activated chloride channels (CaCC) encoded by family members of transmembrane proteins of unknown function 16 (TMEM16) have recently been intensely studied for functional properties as well as their physiological roles as chloride channels in various tissues. One technical hurdle in studying these channels is the well-known channel rundown that frequently impairs the precision of electrophysiological measurements for the channels. Using experimental protocols that employ fast-solution exchange, we circumvented the problem of channel rundown by normalizing the Ca(2+)-induced current to the maximally-activated current obtained within a time period in which the channel rundown was negligible. We characterized the activation of the TMEM16A-encoded CaCC (also called ANO1) by Ca(2+), Sr(2+), and Ba(2+), and discovered that Mg(2+) competes with Ca(2+) in binding to the divalent-cation binding site without activating the channel. We also studied the permeability of the ANO1 pore for various anions and found that the anion occupancy in the pore-as revealed by the permeability ratios of these anions-appeared to be inversely correlated with the apparent affinity of the ANO1 inhibition by niflumic acid (NFA). On the other hand, the NFA inhibition was neither affected by the degree of the channel activation nor influenced by the types of divalent cations used for the channel activation. These results suggest that the NFA inhibition of ANO1 is likely mediated by altering the pore function but not through changing the channel gating. Our study provides a precise characterization of ANO1 and documents factors that can affect divalent cation activation and NFA inhibition of ANO1.

  16. Zinc activates damage-sensing TRPA1 ion channels

    PubMed Central

    Hu, Hongzhen; Bandell, Michael; Petrus, Matt J.; Zhu, Michael X.; Patapoutian, Ardem

    2009-01-01

    Zinc is an essential biological trace element. It is required for the structure or function of over 300 proteins, and is increasingly recognized for its role in cell signaling. However, high concentrations of zinc have cytotoxic effects, and overexposure to zinc can cause pain and inflammation through unknown mechanisms. Here we show that zinc excites nociceptive somatosensory neurons and causes nociception in mice through TRPA1, a cation channel previously shown to mediate the pungency of wasabi and cinnamon through cysteine-modification. Zinc activates TRPA1 through a novel mechanism that requires zinc influx through TRPA1 channels and subsequent activation via specific intracellular cysteine and histidine residues. TRPA1 is highly sensitive to intracellular zinc, as low nanomolar concentrations activate TRPA1 and modulate its sensitivity. These findings identify TRPA1 as a major target for the sensory effects of zinc, and support an emerging role for zinc as a signaling molecule that can modulate sensory transmission. PMID:19202543

  17. Stream Centerline for Fanno Creek, Oregon

    USGS Publications Warehouse

    Sobieszczyk, Steven

    2011-01-01

    Fanno Creek is a tributary to the Tualatin River and flows though parts of the southwest Portland metropolitan area. The stream is heavily influenced by urban runoff and shows characteristic flashy streamflow and poor water quality commonly associated with urban streams. This data set represents the stream centerline of the current active channel as derived from light detection and ranging (LiDAR) data and aerial photographic imagery.

  18. 30 CFR 816.57 - Hydrologic balance: Activities in or adjacent to perennial or intermittent streams.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 30 Mineral Resources 3 2011-07-01 2011-07-01 false Hydrologic balance: Activities in or adjacent to perennial or intermittent streams. 816.57 Section 816.57 Mineral Resources OFFICE OF SURFACE... PERMANENT PROGRAM PERFORMANCE STANDARDS-SURFACE MINING ACTIVITIES § 816.57 Hydrologic balance: Activities...

  19. 30 CFR 816.57 - Hydrologic balance: Activities in or adjacent to perennial or intermittent streams.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 30 Mineral Resources 3 2010-07-01 2010-07-01 false Hydrologic balance: Activities in or adjacent to perennial or intermittent streams. 816.57 Section 816.57 Mineral Resources OFFICE OF SURFACE... PERMANENT PROGRAM PERFORMANCE STANDARDS-SURFACE MINING ACTIVITIES § 816.57 Hydrologic balance: Activities...

  20. 30 CFR 816.57 - Hydrologic balance: Activities in or adjacent to perennial or intermittent streams.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 30 Mineral Resources 3 2013-07-01 2013-07-01 false Hydrologic balance: Activities in or adjacent to perennial or intermittent streams. 816.57 Section 816.57 Mineral Resources OFFICE OF SURFACE... PERMANENT PROGRAM PERFORMANCE STANDARDS-SURFACE MINING ACTIVITIES § 816.57 Hydrologic balance: Activities...

  1. 30 CFR 816.57 - Hydrologic balance: Activities in or adjacent to perennial or intermittent streams.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 30 Mineral Resources 3 2012-07-01 2012-07-01 false Hydrologic balance: Activities in or adjacent to perennial or intermittent streams. 816.57 Section 816.57 Mineral Resources OFFICE OF SURFACE... PERMANENT PROGRAM PERFORMANCE STANDARDS-SURFACE MINING ACTIVITIES § 816.57 Hydrologic balance: Activities...

  2. 30 CFR 816.57 - Hydrologic balance: Activities in or adjacent to perennial or intermittent streams.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 30 Mineral Resources 3 2014-07-01 2014-07-01 false Hydrologic balance: Activities in or adjacent to perennial or intermittent streams. 816.57 Section 816.57 Mineral Resources OFFICE OF SURFACE... PERMANENT PROGRAM PERFORMANCE STANDARDS-SURFACE MINING ACTIVITIES § 816.57 Hydrologic balance: Activities...

  3. Chemical activation of the mechanotransduction channel Piezo1

    PubMed Central

    Syeda, Ruhma; Xu, Jie; Dubin, Adrienne E; Coste, Bertrand; Mathur, Jayanti; Huynh, Truc; Matzen, Jason; Lao, Jianmin; Tully, David C; Engels, Ingo H; Petrassi, H Michael; Schumacher, Andrew M; Montal, Mauricio; Bandell, Michael; Patapoutian, Ardem

    2015-01-01

    Piezo ion channels are activated by various types of mechanical stimuli and function as biological pressure sensors in both vertebrates and invertebrates. To date, mechanical stimuli are the only means to activate Piezo ion channels and whether other modes of activation exist is not known. In this study, we screened ∼3.25 million compounds using a cell-based fluorescence assay and identified a synthetic small molecule we termed Yoda1 that acts as an agonist for both human and mouse Piezo1. Functional studies in cells revealed that Yoda1 affects the sensitivity and the inactivation kinetics of mechanically induced responses. Characterization of Yoda1 in artificial droplet lipid bilayers showed that Yoda1 activates purified Piezo1 channels in the absence of other cellular components. Our studies demonstrate that Piezo1 is amenable to chemical activation and raise the possibility that endogenous Piezo1 agonists might exist. Yoda1 will serve as a key tool compound to study Piezo1 regulation and function. DOI: http://dx.doi.org/10.7554/eLife.07369.001 PMID:26001275

  4. Disposal Activities and the Unique Waste Streams at the Nevada National Security Site (NNSS)

    SciTech Connect

    Arnold, P.

    2012-10-31

    This slide show documents waste disposal at the Nevada National Security Site. Topics covered include: radionuclide requirements for waste disposal; approved performance assessment (PA) for depleted uranium disposal; requirements; program approval; the Waste Acceptance Review Panel (WARP); description of the Radioactive Waste Acceptance Program (RWAP); facility evaluation; recent program accomplishments, nuclear facility safety changes; higher-activity waste stream disposal; and, large volume bulk waste streams.

  5. Effects of nutrient enrichment on the decomposition of wood and associated microbial activity in streams

    USGS Publications Warehouse

    Gulis, V.; Rosemond, A.D.; Suberkropp, K.; Weyers, H.S.; Benstead, J.P.

    2004-01-01

    1. We determined the effects of nutrient enrichment on wood decomposition rates and microbial activity during a 3-year study in two headwater streams at Coweeta Hydrologic Laboratory, NC, U.S.A. After a 1-year pretreatment period, one of the streams was continuously enriched with inorganic nutrients (nitrogen and phosphorus) for 2 years while the other stream served as a reference. We determined the effects of enrichment on both wood veneers and sticks, which have similar carbon quality but differ in physical characteristics (e.g. surface area to volume ratios, presence of bark) that potentially affect microbial colonisation and activity. 2. Oak wood veneers (0.5 mm thick) were placed in streams monthly and allowed to decompose for approximately 90 days. Nutrient addition stimulated ash-free dry mass loss and increased mean nitrogen content, fungal biomass and microbial respiration on veneers in the treatment stream compared with the reference. The magnitude of the response to enrichment was great, with mass loss 6.1 times, and per cent N, fungal biomass and microbial respiration approximately four times greater in the treatment versus reference stream. 3. Decomposition rate and nitrogen content of maple sticks (ca. 1-2 cm diameter) also increased; however, the effect was less pronounced than for veneers. Wood response overall was greater than that determined for leaves in a comparable study, supporting the hypothesis that response to enrichment may be greater for lower quality organic matter (high C:N) than for higher quality (low C:N) substrates. 4. Our results show that moderate nutrient enrichment can profoundly affect decomposition rate and microbial activity on wood in streams. Thus, the timing and availability of wood that provides retention, structure, attachment sites and food in stream ecosystems may be affected by nutrient concentrations raised by human activities.

  6. Atomic basis for therapeutic activation of neuronal potassium channels

    NASA Astrophysics Data System (ADS)

    Kim, Robin Y.; Yau, Michael C.; Galpin, Jason D.; Seebohm, Guiscard; Ahern, Christopher A.; Pless, Stephan A.; Kurata, Harley T.

    2015-09-01

    Retigabine is a recently approved anticonvulsant that acts by potentiating neuronal M-current generated by KCNQ2-5 channels, interacting with a conserved Trp residue in the channel pore domain. Using unnatural amino-acid mutagenesis, we subtly altered the properties of this Trp to reveal specific chemical interactions required for retigabine action. Introduction of a non-natural isosteric H-bond-deficient Trp analogue abolishes channel potentiation, indicating that retigabine effects rely strongly on formation of a H-bond with the conserved pore Trp. Supporting this model, substitution with fluorinated Trp analogues, with increased H-bonding propensity, strengthens retigabine potency. In addition, potency of numerous retigabine analogues correlates with the negative electrostatic surface potential of a carbonyl/carbamate oxygen atom present in most KCNQ activators. These findings functionally pinpoint an atomic-scale interaction essential for effects of retigabine and provide stringent constraints that may guide rational improvement of the emerging drug class of KCNQ channel activators.

  7. Atomic basis for therapeutic activation of neuronal potassium channels

    PubMed Central

    Kim, Robin Y.; Yau, Michael C.; Galpin, Jason D.; Seebohm, Guiscard; Ahern, Christopher A.; Pless, Stephan A.; Kurata, Harley T.

    2015-01-01

    Retigabine is a recently approved anticonvulsant that acts by potentiating neuronal M-current generated by KCNQ2–5 channels, interacting with a conserved Trp residue in the channel pore domain. Using unnatural amino-acid mutagenesis, we subtly altered the properties of this Trp to reveal specific chemical interactions required for retigabine action. Introduction of a non-natural isosteric H-bond-deficient Trp analogue abolishes channel potentiation, indicating that retigabine effects rely strongly on formation of a H-bond with the conserved pore Trp. Supporting this model, substitution with fluorinated Trp analogues, with increased H-bonding propensity, strengthens retigabine potency. In addition, potency of numerous retigabine analogues correlates with the negative electrostatic surface potential of a carbonyl/carbamate oxygen atom present in most KCNQ activators. These findings functionally pinpoint an atomic-scale interaction essential for effects of retigabine and provide stringent constraints that may guide rational improvement of the emerging drug class of KCNQ channel activators. PMID:26333338

  8. Structural aspects of calcium-release activated calcium channel function

    PubMed Central

    Stathopulos, Peter B; Ikura, Mitsuhiko

    2013-01-01

    Store-operated calcium (Ca2+) entry is the process by which molecules located on the endo/sarcoplasmic reticulum (ER/SR) respond to decreased luminal Ca2+ levels by signaling Ca2+ release activated Ca2+ channels (CRAC) channels to open on the plasma membrane (PM). This activation of PM CRAC channels provides a sustained cytosolic Ca2+ elevation associated with myriad physiological processes. The identities of the molecules which mediate SOCE include stromal interaction molecules (STIMs), functioning as the ER/SR luminal Ca2+ sensors, and Orai proteins, forming the PM CRAC channels. This review examines the current available high-resolution structural information on these CRAC molecular components with particular focus on the solution structures of the luminal STIM Ca2+ sensing domains, the crystal structures of cytosolic STIM fragments, a closed Orai hexameric crystal structure and a structure of an Orai1 N-terminal fragment in complex with calmodulin. The accessible structural data are discussed in terms of potential mechanisms of action and cohesiveness with functional observations. PMID:24213636

  9. Effects of biologically-active chemical mixtures on fish in a wastewater-impacted urban stream

    USGS Publications Warehouse

    Barber, Larry B.; Brown, Gregory K.; Nettesheim, Todd G.; Murphy, Elizabeth W.; Bartell, Stephen E.; Schoenfuss, Heiko L.

    2011-01-01

    Stream flow in urban aquatic ecosystems often is maintained by water-reclamation plant (WRP) effluents that contain mixtures of natural and anthropogenic chemicals that persist through the treatment processes. In effluent-impactedstreams, aquatic organisms such as fish are continuously exposed to biologically-activechemicals throughout their life cycles. The North Shore Channel of the Chicago River (Chicago, Illinois) is part of an urban ecosystem in which > 80% of the annual flow consists of effluent from the North Side WRP. In this study, multiple samplings of the effluent and stream water were conducted and fish (largemouth bass and carp) were collected on 2 occasions from the North Shore Channel. Fish also were collected once from the Outer Chicago Harbor in Lake Michigan, a reference site not impacted by WRP discharges. Over 100 organic chemicals with differing behaviors and biological effects were measured, and 23 compounds were detected in all of the water samples analyzed. The most frequently detected and highest concentration (> 100 μg/L) compounds were ethylenediaminetetraacetic acid and 4-nonylphenolmono-to-tetraethoxycarboxylic acids. Other biologically-activechemicals including bisphenol A, 4-nonylphenol, 4-nonylphenolmono-to-tetraethoxylates, 4-tert-octylphenol, and 4-tert-octylphenolmono-to-tetraethoxylates were detected at lower concentrations (cis-androsterone were detected at even lower concentrations (< 0.005 μg/L). There were slight differences in concentrations between the North Side WRP effluent and the North Shore Channel, indicating minimal in-stream attenuation. Fish populations are continuously exposed to mixtures of biologically-activechemicals because of the relative persistency of the chemicals with respect to stream hydraulic residence time, and the lack of a fresh water source for dilution. The majority of male fish exhibited vitellogenin induction, a physiological response consistent with exposure to estrogenic compounds. Tissue

  10. Mode couplings in a two-stream free-electron laser with a helical wiggler and an ion-channel guiding

    SciTech Connect

    Mohsenpour, Taghi Alirezaee, Hajar

    2014-08-15

    In this study, the method of perturbation has been applied to obtain the dispersion relation (DR) of a two-stream free-electron laser (FEL) with a helical wiggler and an ion-channel with all relativistic effects on waves. This DR has been solved numerically to find the unstable modes and their growth rate. Numerical solutions of DR show that the growth rate is considerably enhanced in comparison with single-stream free-electron laser. In group II orbits, with relatively large wiggler induced velocities, new couplings are found. The effect of the velocity difference of the two electron beams on the instabilities has also been investigated in this study. Moreover, the effect of the ion-channel density on the maximum growth rate of FEL resonance has been analyzed.

  11. Cilostazol induces vasodilation through the activation of Ca(2+)-activated K(+) channels in aortic smooth muscle.

    PubMed

    Li, Hongliang; Hong, Da Hye; Son, Youn Kyoung; Na, Sung Hun; Jung, Won-Kyo; Bae, Young Min; Seo, Eun Young; Kim, Sung Joon; Choi, Il-Whan; Park, Won Sun

    2015-07-01

    We investigated the vasorelaxant effect of cilostazol and related signaling pathways in phenylephrine (Phe)-induced pre-contracted aortic rings. Cilostazol induced vasorelaxation in a concentration-dependent manner when aortic rings were pre-contracted with Phe. Application of the voltage-dependent K(+) (Kv) channel inhibitor 4-AP, the ATP-sensitive K(+) (K(ATP)) channel inhibitor glibenclamide, and the inwardly rectifying K(+) (Kir) channel inhibitor Ba(2+) did not alter the vasorelaxant effect of cilostazol; however, pre- and post-treatment with the big-conductance Ca(2+)-activated K(+) (BK(Ca)) channel inhibitor paxilline inhibited the vasorelaxant effect of cilostazol. This vasorelaxant effect of cilostazol was reduced in the presence of an adenylyl cyclase or a protein kinase A (PKA) inhibitor, but not a protein kinase G inhibitor. Inside-out single channel recordings revealed that cilostazol induced the activation of BK(Ca) channel activity. The vasorelaxant effect of cilostazol was not affected by removal of the endothelium. In addition, application of a nitric oxide synthase inhibitor and a small-conductance Ca(2+)-activated K(+) (SK(Ca)) channel inhibitor did not affect cilostazol-induced vasorelaxation. We conclude that cilostazol induced vasorelaxation of the aorta through activation of BK(Ca) channel via a PKA-dependent signaling mechanism independent of endothelium.

  12. Water quality, sediment quality, and stream-channel classification of Rock Creek, Washington, D.C., 1999-2000

    USGS Publications Warehouse

    Anderson, Anita L.; Miller, Cherie V.; Olsen, Lisa D.; Doheny, Edward J.; Phelan, Daniel J.

    2002-01-01

    Rock Creek Park is within the National Capital Region in Washington, D.C., and is maintained by the National Park Service. Part of Montgomery County, Maryland, and part of the District of Columbia drain into Rock Creek, which is a tributary of the Potomac River. Water quality in Rock Creek is important to biotic life in and near the creek, and in the Potomac River Basin and the Chesapeake Bay. The water quality of the Rock Creek Basin has been affected by continued urban and agricultural growth and development. The U.S. Geological Survey, in cooperation with the National Park Service, investigated water quality and sediment quality in Rock Creek over a 2-year period (1998?2000), and performed a stream-channel classification to determine the distribution of bottom sediment in Rock Creek. This report presents and evaluates water quality and bottom sediment in Rock Creek for water years 1999 (October 1, 1998 to September 30, 1999) and 2000 (October 1, 1999 to September 30, 2000). A synoptic surface-water assessment was conducted at five stations from June 23 to June 25, 1999, a temporal surface-water assessment was conducted at one station from February 18, 1999 to September 26, 2000, and bed-sediment samples were collected and assessed from three stations from August 17 to August 19, 1999. The synoptic surface-water assessment included pesticides (parent compounds and selected transformation products), field parameters, nutrients, and major ions. The temporal surface-water assessment included pesticides (parent compounds and selected transformation products) and field parameters. The bed-sediment assessment included trace elements and organic compounds (including low- and high-molecular weight polycyclic aromatic hydrocarbons, poly-chlorinated biphenyls, pesticides, and phthalates). Some, but not all, of the pesticides known to be used in the area were included in the synoptic water-quality assessment, the temporal water-quality assessment, and the bed

  13. Swell activated chloride channel function in human neutrophils

    SciTech Connect

    Salmon, Michael D.; Ahluwalia, Jatinder

    2009-04-17

    Non-excitable cells such as neutrophil granulocytes are the archetypal inflammatory immune cell involved in critical functions of the innate immune system. The electron current generated (I{sub e}) by the neutrophil NADPH oxidase is electrogenic and rapidly depolarises the membrane potential. For continuous function of the NADPH oxidase, I{sub e} has to be balanced to preserve electroneutrality, if not; sufficient depolarisation would prevent electrons from leaving the cell and neutrophil function would be abrogated. Subsequently, the depolarisation generated by the neutrophil NADPH oxidase I{sub e} must be counteracted by ion transport. The finding that depolarisation required counter-ions to compensate electron transport was followed by the observation that chloride channels activated by swell can counteract the NADPH oxidase membrane depolarisation. In this mini review, we discuss the research findings that revealed the essential role of swell activated chloride channels in human neutrophil function.

  14. Fluctuation driven active molecular transport in passive channel proteins

    NASA Astrophysics Data System (ADS)

    Kosztin, Ioan

    2006-03-01

    Living cells interact with their extracellular environment through the cell membrane, which acts as a protective permeability barrier for preserving the internal integrity of the cell. However, cell metabolism requires controlled molecular transport across the cell membrane, a function that is fulfilled by a wide variety of transmembrane proteins, acting as either passive or active transporters. In this talk it is argued that, contrary to the general belief, in active cell membranes passive and spatially asymmetric channel proteins can act as active transporters by consuming energy from nonequilibrium fluctuations fueled by cell metabolism. This assertion is demonstrated in the case of the E. coli aquaglyceroporin GlpF channel protein, whose high resolution crystal structure is manifestly asymmetric. By calculating the glycerol flux through GlpF within the framework of a stochastic model, it is found that, as a result of channel asymmetry, glycerol uptake driven by a concentration gradient is enhanced significantly in the presence of non-equilibrium fluctuations. Furthermore, the enhancement caused by a ratchet-like mechanism is larger for the outward, i.e., from the cytoplasm to the periplasm, flux than for the inward one, suggesting that the same non-equilibrium fluctuations also play an important role in protecting the interior of the cell against poisoning by excess uptake of glycerol. Preliminary data on water and sugar transport through aquaporin and maltoporin channels, respectively, are indicative of the universality of the proposed nonequilibrium-fluctuation-driven active transport mechanism. This work was supported by grants from the Univ. of Missouri Research Board, the Institute for Theoretical Sciences and the Department of Energy (DOE Contract W-7405-ENG-36), and the National Science Foundation (FIBR-0526854).

  15. Modulation of bone remodeling via mechanically activated ion channels

    NASA Technical Reports Server (NTRS)

    Duncan, Randall L. (Principal Investigator)

    1996-01-01

    A critical factor in the maintenance of bone mass is the physical forces imposed upon the skeleton. Removal of these forces, such as in a weightless environment, results in a rapid loss of bone, whereas application of exogenous mechanical strain has been shown to increase bone formation. Numerous flight and ground-based experiments indicate that the osteoblast is the key bone cell influenced by mechanical stimulation. Aside from early transient fluctuations in response to unloading, osteoclast number and activity seem unaffected by removal of strain. However, bone formation is drastically reduced in weightlessness and osteoblasts respond to mechanical strain with an increase in the activity of a number of second messenger pathways resulting in increased anabolic activity. Unfortunately, the mechanism by which the osteoblast converts physical stimuli into a biochemical message, a process we have termed biochemical coupling, remains elusive. Prior to the application of this grant, we had characterized a mechanosensitive, cation nonselective channel (SA-cat) in osteoblast-like osteosarcoma cells that we proposed is the initial signalling mechanism for mechanotransduction. During the execution of this grant, we have made considerable progress to further characterize this channel as well as to determine its role in the osteoblastic response to mechanical strain. To achieve these goals, we combined electrophysiologic techniques with cellular and molecular biology methods to examine the role of these channels in the normal function of the osteoblast in vitro.

  16. Stimulation of epithelial sodium channel activity by the sulfonylurea glibenclamide.

    PubMed

    Chrabi, A; Horisberger, J D

    1999-07-01

    The amiloride-sensitive epithelial sodium channel (ENaC) contributes to the regulation of the sodium balance and blood pressure because it mediates a rate-limiting step in sodium transport across the epithelium of the distal nephron. The activity of ENaC is regulated by hormones, such as aldosterone and vasopressin, and by other intracellular or extracellular factors, but the mechanisms of these regulations are not yet well understood. It has been proposed that ENaC may be regulated by an associated ATP-binding cassette protein such as the cystic fibrosis conductance regulator or the K channel-associated sulfonylurea receptor. Glibenclamide, a known inhibitor of sulfonylurea receptor and cystic fibrosis conductance regulator, induced a dose-dependent and reversible stimulation (of the order of 40-50%) of the amiloride-sensitive current in oocytes expressing Xenopus ENaC, with a K1/2 of 45 +/- 5 microM. A similar effect was observed in oocytes expressing human ENaC, but not rat ENaC. Measurements performed with various combinations of rat and Xenopus subunits indicated that several subunits are involved in this effect. Glibenclamide also increased the transepithelial Na transport by the A6 Xenopus kidney cell line. Single-channel current recordings showed a doubling of the number of the open channels when glibenclamide was applied locally to the extracellular surface of the cell membrane. These results support the hypothesis of the existence of an associated ATP-binding cassette-type regulatory protein associated with the epithelial sodium channel. PMID:10381797

  17. Ca(2+)-activated K+ channels in rat thymic lymphocytes: activation by concanavalin A.

    PubMed Central

    Mahaut-Smith, M P; Mason, M J

    1991-01-01

    1. The role of ion channels in the mitogenic response of rat thymic lymphocytes to concanavalin A (ConA) was studied using single-channel patch-clamp recordings and measurements of membrane potential with the fluorescent probe bis-oxonol. 2. ConA (20 micrograms ml-1) evoked a rapid membrane hyperpolarization; Indo-1 measurements indicated a concurrent increase in [Ca2+]i. The hyperpolarization was blocked by cytoplasmic loading with the Ca2+ buffer BAPTA (bis(O-amino-phenoxy)ethane-N,N,N',N'-tetraacetic acid), or charybdotoxin, a component of scorpion venom known to block K+ channels in lymphocytes. 3. Cell-attached patch-clamp recordings showed that both ConA and the Ca2+ ionophore ionomycin activated channels with high selectivity for K+. Two conductance levels were observed -6-7 pS and 17-18 pS-measured as inward chord conductance at 60 mV from reversal potential (Erev) with 140 mM-KCl in the pipette. The current-voltage relationship for the larger channel displayed inward rectification and channel open probability was weakly dependent upon membrane potential. 4. These experiments provide the first direct evidence for mitogen-activated Ca(2+)-gated K+ channels (IK(Ca)) in lymphocytes. This conductance is relatively inactive in unstimulated rat thymocytes but following the intracellular Ca2+ rises induced by ConA, IK(Ca) channels are activated and produce a significant hyperpolarization of the cell potential. PMID:1716678

  18. A common mechanism underlies stretch activation and receptor activation of TRPC6 channels

    PubMed Central

    Spassova, Maria A.; Hewavitharana, Thamara; Xu, Wen; Soboloff, Jonathan; Gill, Donald L.

    2006-01-01

    The TRP family of ion channels transduce an extensive range of chemical and physical signals. TRPC6 is a receptor-activated nonselective cation channel expressed widely in vascular smooth muscle and other cell types. We report here that TRPC6 is also a sensor of mechanically and osmotically induced membrane stretch. Pressure-induced activation of TRPC6 was independent of phospholipase C. The stretch responses were blocked by the tarantula peptide, GsMTx-4, known to specifically inhibit mechanosensitive channels by modifying the external lipid-channel boundary. The GsMTx-4 peptide also blocked the activation of TRPC6 channels by either receptor-induced PLC activation or by direct application of diacylglycerol. The effects of the peptide on both stretch- and diacylglycerol-mediated TRPC6 activation indicate that the mechanical and chemical lipid sensing by the channel has a common molecular mechanism that may involve lateral-lipid tension. The mechanosensing properties of TRPC6 channels highly expressed in smooth muscle cells are likely to play a key role in regulating myogenic tone in vascular tissue. PMID:17056714

  19. Ice stream activity scaled to ice sheet volume during Laurentide Ice Sheet deglaciation

    NASA Astrophysics Data System (ADS)

    Stokes, C. R.; Margold, M.; Clark, C. D.; Tarasov, L.

    2016-02-01

    The contribution of the Greenland and West Antarctic ice sheets to sea level has increased in recent decades, largely owing to the thinning and retreat of outlet glaciers and ice streams. This dynamic loss is a serious concern, with some modelling studies suggesting that the collapse of a major ice sheet could be imminent or potentially underway in West Antarctica, but others predicting a more limited response. A major problem is that observations used to initialize and calibrate models typically span only a few decades, and, at the ice-sheet scale, it is unclear how the entire drainage network of ice streams evolves over longer timescales. This represents one of the largest sources of uncertainty when predicting the contributions of ice sheets to sea-level rise. A key question is whether ice streams might increase and sustain rates of mass loss over centuries or millennia, beyond those expected for a given ocean-climate forcing. Here we reconstruct the activity of 117 ice streams that operated at various times during deglaciation of the Laurentide Ice Sheet (from about 22,000 to 7,000 years ago) and show that as they activated and deactivated in different locations, their overall number decreased, they occupied a progressively smaller percentage of the ice sheet perimeter and their total discharge decreased. The underlying geology and topography clearly influenced ice stream activity, but—at the ice-sheet scale—their drainage network adjusted and was linked to changes in ice sheet volume. It is unclear whether these findings can be directly translated to modern ice sheets. However, contrary to the view that sees ice streams as unstable entities that can accelerate ice-sheet deglaciation, we conclude that ice streams exerted progressively less influence on ice sheet mass balance during the retreat of the Laurentide Ice Sheet.

  20. Ice stream activity scaled to ice sheet volume during Laurentide Ice Sheet deglaciation.

    PubMed

    Stokes, C R; Margold, M; Clark, C D; Tarasov, L

    2016-02-18

    The contribution of the Greenland and West Antarctic ice sheets to sea level has increased in recent decades, largely owing to the thinning and retreat of outlet glaciers and ice streams. This dynamic loss is a serious concern, with some modelling studies suggesting that the collapse of a major ice sheet could be imminent or potentially underway in West Antarctica, but others predicting a more limited response. A major problem is that observations used to initialize and calibrate models typically span only a few decades, and, at the ice-sheet scale, it is unclear how the entire drainage network of ice streams evolves over longer timescales. This represents one of the largest sources of uncertainty when predicting the contributions of ice sheets to sea-level rise. A key question is whether ice streams might increase and sustain rates of mass loss over centuries or millennia, beyond those expected for a given ocean-climate forcing. Here we reconstruct the activity of 117 ice streams that operated at various times during deglaciation of the Laurentide Ice Sheet (from about 22,000 to 7,000 years ago) and show that as they activated and deactivated in different locations, their overall number decreased, they occupied a progressively smaller percentage of the ice sheet perimeter and their total discharge decreased. The underlying geology and topography clearly influenced ice stream activity, but--at the ice-sheet scale--their drainage network adjusted and was linked to changes in ice sheet volume. It is unclear whether these findings can be directly translated to modern ice sheets. However, contrary to the view that sees ice streams as unstable entities that can accelerate ice-sheet deglaciation, we conclude that ice streams exerted progressively less influence on ice sheet mass balance during the retreat of the Laurentide Ice Sheet. PMID:26887494

  1. Ecosystem Function in Appalachian Headwater Streams during an Active Invasion by the Hemlock Woolly Adelgid

    PubMed Central

    Northington, Robert M.; Webster, Jackson R.; Benfield, Ernest F.; Cheever, Beth M.; Niederlehner, Barbara R.

    2013-01-01

    Forested ecosystems in the southeastern United States are currently undergoing an invasion by the hemlock woolly adelgid (HWA). Previous studies in this area have shown changes to forest structure, decreases in canopy cover, increases in organic matter, and changes to nutrient cycling on the forest floor and soil. Here, we were interested in how the effects of canopy loss and nutrient leakage from terrestrial areas would translate into functional changes in streams draining affected watersheds. We addressed these questions in HWA-infested watersheds at the Coweeta Hydrologic Laboratory in North Carolina. Specifically, we measured stream metabolism (gross primary production and ecosystem respiration) and nitrogen uptake from 2008 to 2011 in five streams across the Coweeta basin. Over the course of our study, we found no change to in-stream nutrient concentrations. While canopy cover decreased annually in these watersheds, this change in light penetration did not translate to higher rates of in-stream primary production during the summer months of our study. We found a trend towards greater heterotrophy within our watersheds, where in-stream respiration accounted for a much larger component of net ecosystem production than GPP. Additionally, increases in rhododendron cover may counteract changes in light and nutrient availability that occurred with hemlock loss. The variability in our metabolic and uptake parameters suggests an actively-infested ecosystem in transition between steady states. PMID:23613803

  2. Permafrost thaw and intense thermokarst activity decreases abundance of stream benthic macroinvertebrates.

    PubMed

    Chin, Krista S; Lento, Jennifer; Culp, Joseph M; Lacelle, Denis; Kokelj, Steven V

    2016-08-01

    Intensification of permafrost thaw has increased the frequency and magnitude of large permafrost slope disturbances (mega slumps) in glaciated terrain of northwestern Canada. Individual thermokarst disturbances up to 40 ha in area have made large volumes of previously frozen sediments available for leaching and transport to adjacent streams, significantly increasing sediment and solute loads in these systems. To test the effects of this climate-sensitive disturbance regime on the ecology of Arctic streams, we explored the relationship between physical and chemical variables and benthic macroinvertebrate communities in disturbed and undisturbed stream reaches in the Peel Plateau, Northwest Territories, Canada. Highly disturbed and undisturbed stream reaches differed with respect to taxonomic composition and invertebrate abundance. Minimally disturbed reaches were not differentiated by these variables but rather were distributed along a disturbance gradient between highly disturbed and undisturbed sites. In particular, there was evidence of a strong negative relationship between macroinvertebrate abundance and total suspended solids, and a positive relationship between abundance and the distance from the disturbance. Increases in both sediments and nutrients appear to be the proximate cause of community differences in highly disturbed streams. Declines in macroinvertebrate abundance in response to slump activity have implications for the food webs of these systems, potentially leading to negative impacts on higher trophic levels, such as fish. Furthermore, the disturbance impacts on stream health can be expected to intensify as climate change increases the frequency and magnitude of thermokarst. PMID:26766394

  3. Permafrost thaw and intense thermokarst activity decreases abundance of stream benthic macroinvertebrates.

    PubMed

    Chin, Krista S; Lento, Jennifer; Culp, Joseph M; Lacelle, Denis; Kokelj, Steven V

    2016-08-01

    Intensification of permafrost thaw has increased the frequency and magnitude of large permafrost slope disturbances (mega slumps) in glaciated terrain of northwestern Canada. Individual thermokarst disturbances up to 40 ha in area have made large volumes of previously frozen sediments available for leaching and transport to adjacent streams, significantly increasing sediment and solute loads in these systems. To test the effects of this climate-sensitive disturbance regime on the ecology of Arctic streams, we explored the relationship between physical and chemical variables and benthic macroinvertebrate communities in disturbed and undisturbed stream reaches in the Peel Plateau, Northwest Territories, Canada. Highly disturbed and undisturbed stream reaches differed with respect to taxonomic composition and invertebrate abundance. Minimally disturbed reaches were not differentiated by these variables but rather were distributed along a disturbance gradient between highly disturbed and undisturbed sites. In particular, there was evidence of a strong negative relationship between macroinvertebrate abundance and total suspended solids, and a positive relationship between abundance and the distance from the disturbance. Increases in both sediments and nutrients appear to be the proximate cause of community differences in highly disturbed streams. Declines in macroinvertebrate abundance in response to slump activity have implications for the food webs of these systems, potentially leading to negative impacts on higher trophic levels, such as fish. Furthermore, the disturbance impacts on stream health can be expected to intensify as climate change increases the frequency and magnitude of thermokarst.

  4. Ecosystem function in Appalachian headwater streams during an active invasion by the hemlock woolly adelgid.

    PubMed

    Northington, Robert M; Webster, Jackson R; Benfield, Ernest F; Cheever, Beth M; Niederlehner, Barbara R

    2013-01-01

    Forested ecosystems in the southeastern United States are currently undergoing an invasion by the hemlock woolly adelgid (HWA). Previous studies in this area have shown changes to forest structure, decreases in canopy cover, increases in organic matter, and changes to nutrient cycling on the forest floor and soil. Here, we were interested in how the effects of canopy loss and nutrient leakage from terrestrial areas would translate into functional changes in streams draining affected watersheds. We addressed these questions in HWA-infested watersheds at the Coweeta Hydrologic Laboratory in North Carolina. Specifically, we measured stream metabolism (gross primary production and ecosystem respiration) and nitrogen uptake from 2008 to 2011 in five streams across the Coweeta basin. Over the course of our study, we found no change to in-stream nutrient concentrations. While canopy cover decreased annually in these watersheds, this change in light penetration did not translate to higher rates of in-stream primary production during the summer months of our study. We found a trend towards greater heterotrophy within our watersheds, where in-stream respiration accounted for a much larger component of net ecosystem production than GPP. Additionally, increases in rhododendron cover may counteract changes in light and nutrient availability that occurred with hemlock loss. The variability in our metabolic and uptake parameters suggests an actively-infested ecosystem in transition between steady states.

  5. Active Learning in Context-Driven Stream Mining With an Application to Image Mining.

    PubMed

    Tekin, Cem; van der Schaar, Mihaela

    2015-11-01

    We propose an image stream mining method in which images arrive with contexts (metadata) and need to be processed in real time by the image mining system (IMS), which needs to make predictions and derive actionable intelligence from these streams. After extracting the features of the image by preprocessing, IMS determines online the classifier to use on the extracted features to make a prediction using the context of the image. A key challenge associated with stream mining is that the prediction accuracy of the classifiers is unknown, since the image source is unknown; thus, these accuracies need to be learned online. Another key challenge of stream mining is that learning can only be done by observing the true label, but this is costly to obtain. To address these challenges, we model the image stream mining problem as an active, online contextual experts problem, where the context of the image is used to guide the classifier selection decision. We develop an active learning algorithm and show that it achieves regret sublinear in the number of images that have been observed so far. To further illustrate and assess the performance of our proposed methods, we apply them to diagnose breast cancer from the images of cellular samples obtained from the fine needle aspirate of breast mass. Our findings show that very high diagnosis accuracy can be achieved by actively obtaining only a small fraction of true labels through surgical biopsies. Other applications include video surveillance and video traffic monitoring. PMID:26087490

  6. Location of Release Sites and Calcium-Activated Chloride Channels Relative to Calcium Channels at the Photoreceptor Ribbon Synapse

    PubMed Central

    Mercer, A. J.; Rabl, K.; Riccardi, G. E.; Brecha, N. C.; Stella, S. L.

    2011-01-01

    Vesicle release from photoreceptor ribbon synapses is regulated by L-type Ca2+ channels, which are in turn regulated by Cl− moving through calcium-activated chloride [Cl(Ca)] channels. We assessed the proximity of Ca2+ channels to release sites and Cl(Ca) channels in synaptic terminals of salamander photoreceptors by comparing fast (BAPTA) and slow (EGTA) intracellular Ca2+ buffers. BAPTA did not fully block synaptic release, indicating some release sites are <100 nm from Ca2+ channels. Comparing Cl(Ca) currents with predicted Ca2+ diffusion profiles suggested that Cl(Ca) and Ca2+ channels average a few hundred nanometers apart, but the inability of BAPTA to block Cl(Ca) currents completely suggested some channels are much closer together. Diffuse immunolabeling of terminals with an antibody to the putative Cl(Ca) channel TMEM16A supports the idea that Cl(Ca) channels are dispersed throughout the presynaptic terminal, in contrast with clustering of Ca2+ channels near ribbons. Cl(Ca) currents evoked by intracellular calcium ion concentration ([Ca2+]i) elevation through flash photolysis of DM-nitrophen exhibited EC50 values of 556 and 377 nM with Hill slopes of 1.8 and 2.4 in rods and cones, respectively. These relationships were used to estimate average submembrane [Ca2+]i in photoreceptor terminals. Consistent with control of exocytosis by [Ca2+] nanodomains near Ca2+ channels, average submembrane [Ca2+]i remained below the vesicle release threshold (∼400 nM) over much of the physiological voltage range for cones. Positioning Ca2+ channels near release sites may improve fidelity in converting voltage changes to synaptic release. A diffuse distribution of Cl(Ca) channels may allow Ca2+ influx at one site to influence relatively distant Ca2+ channels. PMID:21084687

  7. Regulation of Hyperpolarization-activated Cyclic Nucleotide-gated (HCN) Channel Activity by cCMP*

    PubMed Central

    Zong, Xiangang; Krause, Stefanie; Chen, Cheng-Chang; Krüger, Jens; Gruner, Christian; Cao-Ehlker, Xiaochun; Fenske, Stefanie; Wahl-Schott, Christian; Biel, Martin

    2012-01-01

    Activation of hyperpolarization-activated cyclic nucleotide-gated (HCN) channels is facilitated in vivo by direct binding of the second messenger cAMP. This process plays a fundamental role in the fine-tuning of HCN channel activity and is critical for the modulation of cardiac and neuronal rhythmicity. Here, we identify the pyrimidine cyclic nucleotide cCMP as another regulator of HCN channels. We demonstrate that cCMP shifts the activation curves of two members of the HCN channel family, HCN2 and HCN4, to more depolarized voltages. Moreover, cCMP speeds up activation and slows down deactivation kinetics of these channels. The two other members of the HCN channel family, HCN1 and HCN3, are not sensitive to cCMP. The modulatory effect of cCMP is reversible and requires the presence of a functional cyclic nucleotide-binding domain. We determined an EC50 value of ∼30 μm for cCMP compared with 1 μm for cAMP. Notably, cCMP is a partial agonist of HCN channels, displaying an efficacy of ∼0.6. cCMP increases the frequency of pacemaker potentials from isolated sinoatrial pacemaker cells in the presence of endogenous cAMP concentrations. Electrophysiological recordings indicated that this increase is caused by a depolarizing shift in the activation curve of the native HCN current, which in turn leads to an enhancement of the slope of the diastolic depolarization of sinoatrial node cells. In conclusion, our findings establish cCMP as a gating regulator of HCN channels and indicate that this cyclic nucleotide has to be considered in HCN channel-regulated processes. PMID:22715094

  8. Acoustic signal propagation and measurement in natural stream channels for application to surrogate bed load measurements: Halfmoon Creek, Colorado

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Monitoring sediment-generated noise using submerged hydrophones is a surrogate method for measuring bed load transport in streams with the potential for improving estimates of bed load transport through widespread, inexpensive monitoring. Understanding acoustic signal propagation in natural stream e...

  9. Molecular candidates for cardiac stretch-activated ion channels

    PubMed Central

    Reed, Alistair; Kohl, Peter; Peyronnet, Rémi

    2014-01-01

    The heart is a mechanically-active organ that dynamically senses its own mechanical environment. This environment is constantly changing, on a beat-by-beat basis, with additional modulation by respiratory activity and changes in posture or physical activity, and further overlaid with more slowly occurring physiological (e.g. pregnancy, endurance training) or pathological challenges (e.g. pressure or volume overload). Far from being a simple pump, the heart detects changes in mechanical demand and adjusts its performance accordingly, both via heart rate and stroke volume alteration. Many of the underlying regulatory processes are encoded intracardially, and are thus maintained even in heart transplant recipients. Over the last three decades, molecular substrates of cardiac mechanosensitivity have gained increasing recognition in the scientific and clinical communities. Nonetheless, the processes underlying this phenomenon are still poorly understood. Stretch-activated ion channels (SAC) have been identified as one contributor to mechanosensitive autoregulation of the heartbeat. They also appear to play important roles in the development of cardiac pathologies – most notably stretch-induced arrhythmias. As recently discovered, some established cardiac drugs act, in part at least, via mechanotransduction pathways suggesting SAC as potential therapeutic targets. Clearly, identification of the molecular substrate of cardiac SAC is of clinical importance and a number of candidate proteins have been identified. At the same time, experimental studies have revealed variable–and at times contrasting–results regarding their function. Further complication arises from the fact that many ion channels that are not classically defined as SAC, including voltage and ligand-gated ion channels, can respond to mechanical stimulation. Here, we summarise what is known about the molecular substrate of the main candidates for cardiac SAC, before identifying potential further

  10. Crevasse-squeeze ridge corridors: Diagnostic features of late-stage palaeo-ice stream activity

    NASA Astrophysics Data System (ADS)

    Evans, David J. A.; Storrar, Robert D.; Rea, Brice R.

    2016-04-01

    A 200-km-long and 10-km-wide linear assemblage of till-filled geometrical ridges on the bed of the Maskwa palaeo-ice stream of the late Wisconsinan southwest Laurentide Ice Sheet are interpreted as crevasse-squeeze ridges (CSR) developed during internal flow unit reorganization, immediately prior to ice stream shutdown. Ridge orientations are predominantly orientated WNW-ESE, with a subordinate WSW-ENE alignment, both indicative of ice fracture development transverse to former ice stream flow, as indicated by NNE-SSW aligned MSGL. Subglacial till injection into basal and/or full depth, mode I and II crevasses occurred at the approximate centreline of the ice stream, in response to extension and fracturing. Landform preservation indicates that this took place during the final stages of ice streaming, immediately prior to ice stream shutdown. This linear zone of ice fracturing therefore likely represents the narrowing of the fast-flowing trunk, similar to the plug flow identified in some surging valley glaciers. Lateral drag between the final active flow unit and the slower moving ice on either side is likely recorded by the up-ice bending of the CSR limbs. The resulting CSR corridor, here related to an individual ice stream flow unit, constitutes a previously unreported style of crevasse infilling and contrasts with two existing CSR patterns: (1) wide arcuate zones of CSRs related to widespread fracturing within glacier surge lobes; and (2) narrow concentric arcs of CSRs and recessional push moraines related to submarginal till deformation at active temperate glacier lobes.

  11. Running out of time: the decline of channel activity and nucleotide activation in adenosine triphosphate-sensitive K-channels

    PubMed Central

    Proks, Peter; Puljung, Michael C.; Vedovato, Natascia; Sachse, Gregor; Mulvaney, Rachel; Ashcroft, Frances M.

    2016-01-01

    KATP channels act as key regulators of electrical excitability by coupling metabolic cues—mainly intracellular adenine nucleotide concentrations—to cellular potassium ion efflux. However, their study has been hindered by their rapid loss of activity in excised membrane patches (rundown), and by a second phenomenon, the decline of activation by Mg-nucleotides (DAMN). Degradation of PI(4,5)P2 and other phosphoinositides is the strongest candidate for the molecular cause of rundown. Broad evidence indicates that most other determinants of rundown (e.g. phosphorylation, intracellular calcium, channel mutations that affect rundown) also act by influencing KATP channel regulation by phosphoinositides. Unfortunately, experimental conditions that reproducibly prevent rundown have remained elusive, necessitating post hoc data compensation. Rundown is clearly distinct from DAMN. While the former is associated with pore-forming Kir6.2 subunits, DAMN is generally a slower process involving the regulatory sulfonylurea receptor (SUR) subunits. We speculate that it arises when SUR subunits enter non-physiological conformational states associated with the loss of SUR nucleotide-binding domain dimerization following prolonged exposure to nucleotide-free conditions. This review presents new information on both rundown and DAMN, summarizes our current understanding of these processes and considers their physiological roles. This article is part of the themed issue ‘Evolution brings Ca2+ and ATP together to control life and death’. PMID:27377720

  12. In-stream attenuation of neuro-active pharmaceuticals and their metabolites

    USGS Publications Warehouse

    Writer, Jeffrey; Antweiler, Ronald C.; Ferrar, Imma; Ryan, Joseph N.; Thurman, Michael

    2013-01-01

    In-stream attenuation was determined for 14 neuro-active pharmaceuticals and associated metabolites. Lagrangian sampling, which follows a parcel of water as it moves downstream, was used to link hydrological and chemical transformation processes. Wastewater loading of neuro-active compounds varied considerably over a span of several hours, and thus a sampling regime was used to verify that the Lagrangian parcel was being sampled and a mechanism was developed to correct measured concentrations if it was not. In-stream attenuation over the 5.4-km evaluated reach could be modeled as pseudo-first-order decay for 11 of the 14 evaluated neuro-active pharmaceutical compounds, illustrating the capacity of streams to reduce conveyance of neuro-active compounds downstream. Fluoxetine and N-desmethyl citalopram were the most rapidly attenuated compounds (t1/2 = 3.6 ± 0.3 h, 4.0 ± 0.2 h, respectively). Lamotrigine, 10,11,-dihydro-10,11,-dihydroxy-carbamazepine, and carbamazepine were the most persistent (t1/2 = 12 ± 2.0 h, 12 ± 2.6 h, 21 ± 4.5 h, respectively). Parent compounds (e.g., buproprion, carbamazepine, lamotrigine) generally were more persistent relative to their metabolites. Several compounds (citalopram, venlafaxine, O-desmethyl-venlafaxine) were not attenuated. It was postulated that the primary mechanism of removal for these compounds was interaction with bed sediments and stream biofilms, based on measured concentrations in stream biofilms and a column experiment using stream sediments.

  13. Curcumin inhibits activation of TRPM2 channels in rat hepatocytes.

    PubMed

    Kheradpezhouh, E; Barritt, G J; Rychkov, G Y

    2016-04-01

    Oxidative stress is a hallmark of many liver diseases including viral and drug-induced hepatitis, ischemia-reperfusion injury, and non-alcoholic steatohepatitis. One of the consequences of oxidative stress in the liver is deregulation of Ca(2+) homeostasis, resulting in a sustained elevation of the free cytosolic Ca(2+) concentration ([Ca(2+)]c) in hepatocytes, which leads to irreversible cellular damage. Recently it has been shown that liver damage induced by paracetamol and subsequent oxidative stress is, in large part, mediated by Ca(2+) entry through Transient Receptor Potential Melastatin 2 (TRPM2) channels. Involvement of TRPM2 channels in hepatocellular damage induced by oxidative stress makes TRPM2 a potential therapeutic target for treatment of a range of oxidative stress-related liver diseases. We report here the identification of curcumin ((1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)-1,6-heptadiene-3,5-dione), a natural plant-derived polyphenol in turmeric spice, as a novel inhibitor of TRPM2 channel. Presence of 5µM curcumin in the incubation medium prevented the H2O2- and paracetamol-induced [Ca(2+)]c rise in rat hepatocytes. Furthermore, in patch clamping experiments incubation of hepatocytes with curcumin inhibited activation of TRPM2 current by intracellular ADPR with IC50 of approximately 50nM. These findings enhance understanding of the actions of curcumin and suggest that the known hepatoprotective properties of curcumin are, at least in part, mediated through inhibition of TRPM2 channels.

  14. Curcumin inhibits activation of TRPM2 channels in rat hepatocytes

    PubMed Central

    Kheradpezhouh, E.; Barritt, G.J.; Rychkov, G.Y.

    2015-01-01

    Oxidative stress is a hallmark of many liver diseases including viral and drug-induced hepatitis, ischemia-reperfusion injury, and non-alcoholic steatohepatitis. One of the consequences of oxidative stress in the liver is deregulation of Ca2+ homeostasis, resulting in a sustained elevation of the free cytosolic Ca2+ concentration ([Ca2+]c) in hepatocytes, which leads to irreversible cellular damage. Recently it has been shown that liver damage induced by paracetamol and subsequent oxidative stress is, in large part, mediated by Ca2+ entry through Transient Receptor Potential Melastatin 2 (TRPM2) channels. Involvement of TRPM2 channels in hepatocellular damage induced by oxidative stress makes TRPM2 a potential therapeutic target for treatment of a range of oxidative stress-related liver diseases. We report here the identification of curcumin ((1E,6E)-1,7-bis(4-hydroxy-3-methoxyphenyl)-1,6-heptadiene-3,5-dione), a natural plant-derived polyphenol in turmeric spice, as a novel inhibitor of TRPM2 channel. Presence of 5 µM curcumin in the incubation medium prevented the H2O2- and paracetamol-induced [Ca2+]c rise in rat hepatocytes. Furthermore, in patch clamping experiments incubation of hepatocytes with curcumin inhibited activation of TRPM2 current by intracellular ADPR with IC50 of approximately 50 nM. These findings enhance understanding of the actions of curcumin and suggest that the known hepatoprotective properties of curcumin are, at least in part, mediated through inhibition of TRPM2 channels. PMID:26609559

  15. Photochemical activation of TRPA1 channels in neurons and animals

    PubMed Central

    Kokel, David; Cheung, Chung Yan J.; Mills, Robert; Coutinho-Budd, Jaeda; Huang, Liyi; Setola, Vincent; Sprague, Jared; Jin, Shan; Jin, Youngnam N.; Huang, Xi-Ping; Bruni, Giancarlo; Woolf, Clifford; Roth, Bryan L.; Hamblin, Michael R; Zylka, Mark J.; Milan, David J.; Peterson, Randall T.

    2013-01-01

    Optogenetics is a powerful research tool because it enables high-resolution optical control of neuronal activity. However, current optogenetic approaches are limited to transgenic systems expressing microbial opsins and other exogenous photoreceptors. Here, we identify optovin, a small molecule that enables repeated photoactivation of motor behaviors in wild type animals. Surprisingly, optovin's behavioral effects are not visually mediated. Rather, photodetection is performed by sensory neurons expressing the cation channel TRPA1. TRPA1 is both necessary and sufficient for the optovin response. Optovin activates human TRPA1 via structure-dependent photochemical reactions with redox-sensitive cysteine residues. In animals with severed spinal cords, optovin treatment enables control of motor activity in the paralyzed extremities by localized illumination. These studies identify a light-based strategy for controlling endogenous TRPA1 receptors in vivo, with potential clinical and research applications in non-transgenic animals, including humans. PMID:23396078

  16. Fish as Indicators of Disturbance in Streams Used for Snorkeling Activities in a Tourist Region

    NASA Astrophysics Data System (ADS)

    Teresa, Fabricio Barreto; Romero, Renato De Mei; Casatti, Lilian; Sabino, José

    2011-05-01

    A set of metrics that reflect various aspects of population and fish community structure in streams used for snorkeling was evaluated in the tourist region of Bodoquena Plateau, Brazil, with the purpose of biomonitoring the impacts of such activities. Observations were made while snorkeling in two sites (active = with tourism; inactive = without tourism) and along the gradient of daily tourist activity (before, during and after the passage of tourists) in two streams. Five metrics discriminated active from inactive sites: (i) the abundance of Crenicichla lepidota and (ii) the incidence of reproductive activity in Crenicichla lepidota which were greater in inactive sites, regardless the gradient of daily tourist activity; (iii) the feeding pattern of Prochilodus lineatus, which differed among sites and along the gradient of daily tourist activity; (iv) the abundance of Moenkhausia bonita, which was higher in the active sites and significantly increased along the gradient of daily tourist activity in one stream but decrease along the gradient in other stream; (v) the abundance of Hyphessobrycon eques, which was greater in inactive sites, regardless the gradient of daily tourist activity. With the exception of metric "iv", the metrics were mediated by the reduction in habitat structural complexity due to snorkeling disturbance. The definition of these metrics is relevant because the degradation of ecosystem structural elements is one of the main impacts of recreational activities on aquatic environments. The easy recognition of target species and high water transparency throughout the year ensures the feasibility of these metrics in monitoring programs and may be applied by technicians after quick guides and training.

  17. Fish as indicators of disturbance in streams used for snorkeling activities in a tourist region.

    PubMed

    Teresa, Fabricio Barreto; Romero, Renato de Mei; Casatti, Lilian; Sabino, José

    2011-05-01

    A set of metrics that reflect various aspects of population and fish community structure in streams used for snorkeling was evaluated in the tourist region of Bodoquena Plateau, Brazil, with the purpose of biomonitoring the impacts of such activities. Observations were made while snorkeling in two sites (active = with tourism; inactive = without tourism) and along the gradient of daily tourist activity (before, during and after the passage of tourists) in two streams. Five metrics discriminated active from inactive sites: (i) the abundance of Crenicichla lepidota and (ii) the incidence of reproductive activity in Crenicichla lepidota which were greater in inactive sites, regardless the gradient of daily tourist activity; (iii) the feeding pattern of Prochilodus lineatus, which differed among sites and along the gradient of daily tourist activity; (iv) the abundance of Moenkhausia bonita, which was higher in the active sites and significantly increased along the gradient of daily tourist activity in one stream but decrease along the gradient in other stream; (v) the abundance of Hyphessobrycon eques, which was greater in inactive sites, regardless the gradient of daily tourist activity. With the exception of metric "iv", the metrics were mediated by the reduction in habitat structural complexity due to snorkeling disturbance. The definition of these metrics is relevant because the degradation of ecosystem structural elements is one of the main impacts of recreational activities on aquatic environments. The easy recognition of target species and high water transparency throughout the year ensures the feasibility of these metrics in monitoring programs and may be applied by technicians after quick guides and training. PMID:21359866

  18. Stream mesocosm response sensitivities to simulated ion stress in produced waters from resource extraction activities

    EPA Science Inventory

    To increase the ecological relevance of laboratory exposures intent on determining species sensitivity to ion stress from resource extraction activities we have conducted several stream mesocosm dosing studies that pair single-species and community-level responses in-situ and all...

  19. Meta-Analysis of Lost Ecosystem Attributes in Urban Streams and the Effectiveness of Out-of-Channel Management Practices

    EPA Science Inventory

    Watershed development is a leading cause of stream impairment, and it increasingly threatens the availability, quality, and sustainability of freshwater resources as human populations continue to grow and migrate. Most efforts have focused on trying to improve ecological conditio...

  20. Large-Conductance Calcium-Activated Potassium Channels in Glomerulus: From Cell Signal Integration to Disease

    PubMed Central

    Tao, Jie; Lan, Zhen; Wang, Yunman; Hei, Hongya; Tian, Lulu; Pan, Wanma; Zhang, Xuemei; Peng, Wen

    2016-01-01

    Large-conductance calcium-activated potassium (BK) channels are currently considered as vital players in a variety of renal physiological processes. In podocytes, BK channels become active in response to stimuli that increase local cytosolic Ca2+, possibly secondary to activation of slit diaphragm TRPC6 channels by chemical or mechanical stimuli. Insulin increases filtration barrier permeability through mobilization of BK channels. In mesangial cells, BK channels co-expressed with β1 subunits act as a major component of the counteractive response to contraction in order to regulate glomerular filtration. This review aims to highlight recent discoveries on the localization, physiological and pathological roles of BK channels in glomerulus. PMID:27445840

  1. Large-Conductance Calcium-Activated Potassium Channels in Glomerulus: From Cell Signal Integration to Disease.

    PubMed

    Tao, Jie; Lan, Zhen; Wang, Yunman; Hei, Hongya; Tian, Lulu; Pan, Wanma; Zhang, Xuemei; Peng, Wen

    2016-01-01

    Large-conductance calcium-activated potassium (BK) channels are currently considered as vital players in a variety of renal physiological processes. In podocytes, BK channels become active in response to stimuli that increase local cytosolic Ca(2+), possibly secondary to activation of slit diaphragm TRPC6 channels by chemical or mechanical stimuli. Insulin increases filtration barrier permeability through mobilization of BK channels. In mesangial cells, BK channels co-expressed with β1 subunits act as a major component of the counteractive response to contraction in order to regulate glomerular filtration. This review aims to highlight recent discoveries on the localization, physiological and pathological roles of BK channels in glomerulus. PMID:27445840

  2. On the estimation of cooperativity in ion channel kinetics: activation free energy and kinetic mechanism of Shaker K+ channel.

    PubMed

    Banerjee, Kinshuk; Das, Biswajit; Gangopadhyay, Gautam

    2013-04-28

    In this paper, we have explored generic criteria of cooperative behavior in ion channel kinetics treating it on the same footing with multistate receptor-ligand binding in a compact theoretical framework. We have shown that the characterization of cooperativity of ion channels in terms of the Hill coefficient violates the standard Hill criteria defined for allosteric cooperativity of ligand binding. To resolve the issue, an alternative measure of cooperativity is proposed here in terms of the cooperativity index that sets a unified criteria for both the systems. More importantly, for ion channel this index can be very useful to describe the cooperative kinetics as it can be readily determined from the experimentally measured ionic current combined with theoretical modelling. We have analyzed the correlation between the voltage value and slope of the voltage-activation curve at the half-activation point and consequently determined the standard free energy of activation of the ion channel using two well-established mechanisms of cooperativity, namely, Koshland-Nemethy-Filmer (KNF) and Monod-Wyman-Changeux (MWC) models. Comparison of the theoretical results for both the models with appropriate experimental data of mutational perturbation of Shaker K(+) channel supports the experimental fact that the KNF model is more suitable to describe the cooperative behavior of this class of ion channels, whereas the performance of the MWC model is unsatisfactory. We have also estimated the mechanistic performance through standard free energy of channel activation for both the models and proposed a possible functional disadvantage in the MWC scheme.

  3. NSAIDs attenuate hyperalgesia induced by TRP channel activation

    PubMed Central

    Nozadze, Ivliane; Tsiklauri, Nana; Gurtskaia, Gulnaz; Tsagareli, Merab G.

    2016-01-01

    Transient receptor potential (TRP) cation channels have been extensively investigated as targets for analgesic drug discovery. Because some non-steroidal anti-inflammatory drugs (NSAIDs) are structural analogs of prostaglandins (mediators of inflammation) and NSAIDs attenuate heat nociception and mechanical allodynia in models of inflammatory and neuropathic pain, we examined three widely used NSAIDs (diclofenac, ketorolac, and xefocam) on the activation of TRPA1 and TRPV1 channels using thermal paw withdrawal (Hargreaves) test and mechanical paw withdrawal (von Frey) test in male rats. Thermal withdrawal latencies and mechanical thresholds for both hind paws were obtained with 5, 15, 30, 45, 60, and 120 min intraplantar post-injection of TRPA1 agonizts, allyl isothiocyanate (AITC) (a natural compound of mustard oil) and cinnamaldehyde (CA), and TRPV1 agonist capsaicin or vehicle. Twenty minutes prior to the start of the experiment with TRP agonizts, diclofenac, ketorolac or xefocam were pre-injected in the same hindpaw and animals were examined by these two tests. After pretreatment of all three NSAIDs in the ipsilateral (injected) hindpaw that produced strong antinociceptive effects, AITC, CA, and capsaicin caused significant decreases in latency of the thermal withdrawal reflex compared with vehicle or the contralateral hindpaw. The same findings were observed for the paw withdrawal threshold. In approximately 30 min the effects of CA, AITC, and capsaicin returned to baseline. The data are different from our previous evidence, where TRPA1 agonizts AITC and CA and TRPV1 agonist capsaicin produced hyperalgesia for nearly 2 h and resulted in facilitation of these withdrawal reflexes (Tsagareli et al., 2010, 2013). Thus, our data showing that NSAIDs suppress thermal and mechanical hyperalgesia following TRP activation could presumably due to inactivation or desensitization of TRPA1 and TRPV1 channels by NSAIDs. PMID:26909384

  4. Suspended-sediment yields and stream-channel processes on Judy's Branch watershed in the St. Louis Metro East region in Illinois

    USGS Publications Warehouse

    Straub, Timothy D.; Johnson, Gary P.; Roseboom, Donald P.; Sierra, Carlos R.

    2006-01-01

    Judy's Branch watershed, a small basin (8.64 square miles) in the St. Louis Metro East region in Illinois, was selected as a pilot site to determine suspended-sediment yields and stream-channel processes in the bluffs and American Bottoms (expansive low-lying valley floor in the region). Suspended-sediment and stream-chan-nel data collected and analyzed for Judy's Branch watershed are presented in this report to establish a baseline of data for water-resource managers to evaluate future stream rehabilitation and manage-ment alternatives. The sediment yield analysis determines the amount of sediment being delivered from the watershed and two subwatersheds: an urban tributary and an undeveloped headwater (pri-marily agricultural). The analysis of the subwater-sheds is used to compare the effects of urbanization on sediment yield to the river. The stream-channel contribution to sediment yield was determined by evaluation of the stream-channel processes operat-ing on the streambed and banks of Judy's Branch watershed. Bank stability was related to hydrologic events, bank stratigraphy, and channel geometry through model development and simulation. The average suspended-sediment yield from two upland subwatersheds (drainage areas of 0.23 and 0.40 sq.mi. was 1,163 tons per square mile per year (tons/sq.mi.-year) between July 2000 and June 2004. The suspended-sediment yield at the Route 157 station was 2,523 tons/sq.mi.-year, near the outlet of Judy's Branch watershed (drainage area = 8.33 sq.mi.). This is approximately 1,360 tons/sq.mi.-year greater than the average at the upland stations for the same time period. This result is unexpected in that, generally, the suspended-sediment yield decreases as the watershed area increases because of sediment stored in the channel and flood plain. The difference indicates a possible increase in yield from a source, such as bank retreat, and supports the concept that land-use changes increase stream-flows that may in turn result in

  5. Cold water cleaning of brain proteins, biofilm and bone - harnessing an ultrasonically activated stream.

    PubMed

    Birkin, P R; Offin, D G; Vian, C J B; Howlin, R P; Dawson, J I; Secker, T J; Hervé, R C; Stoodley, P; Oreffo, R O C; Keevil, C W; Leighton, T G

    2015-08-28

    In the absence of sufficient cleaning of medical instruments, contamination and infection can result in serious consequences for the health sector and remains a significant unmet challenge. In this paper we describe a novel cleaning system reliant on cavitation action created in a free flowing fluid stream where ultrasonic transmission to a surface, through the stream, is achieved using careful design and control of the device architecture, sound field and the materials employed. Cleaning was achieved with purified water at room temperature, moderate fluid flow rates and without the need for chemical additives or the high power consumption associated with conventional strategies. This study illustrates the potential in harnessing an ultrasonically activated stream to remove biological contamination including brain tissue from surgical stainless steel substrates, S. epidermidis biofilms from glass, and fat/soft tissue matter from bone structures with considerable basic and clinical applications.

  6. Cold water cleaning of brain proteins, biofilm and bone - harnessing an ultrasonically activated stream.

    PubMed

    Birkin, P R; Offin, D G; Vian, C J B; Howlin, R P; Dawson, J I; Secker, T J; Hervé, R C; Stoodley, P; Oreffo, R O C; Keevil, C W; Leighton, T G

    2015-08-28

    In the absence of sufficient cleaning of medical instruments, contamination and infection can result in serious consequences for the health sector and remains a significant unmet challenge. In this paper we describe a novel cleaning system reliant on cavitation action created in a free flowing fluid stream where ultrasonic transmission to a surface, through the stream, is achieved using careful design and control of the device architecture, sound field and the materials employed. Cleaning was achieved with purified water at room temperature, moderate fluid flow rates and without the need for chemical additives or the high power consumption associated with conventional strategies. This study illustrates the potential in harnessing an ultrasonically activated stream to remove biological contamination including brain tissue from surgical stainless steel substrates, S. epidermidis biofilms from glass, and fat/soft tissue matter from bone structures with considerable basic and clinical applications. PMID:26200694

  7. Microbial activity and phosphorus uptake on decomposing leaf detritus in a heterotrophic stream

    SciTech Connect

    Elwood, J.W.; Mulholland, P.J.; Newbold, J.D.

    1987-01-01

    This paper reports results of experiments to determine the influence of microbes associated with decomposing leaf detritus on the uptake length and retention of phosphorus in a heterotrophic stream. The purposes were to (1) determine the relationship between the biomass and activity of microbes associated with decomposing leaf detritus and the uptake length of PO/sub 4/-P in a stream; (2) compare the temporal pattern in the uptake rate of phosphorus among species of leaves that have been shown to differ in their rate of decomposition as a function of time in a stream; and (3) examine the temporal patterns in the net accumulation, leaching, and transformations of phosphorus in flow-through systems containing decomposing leaf detritus.

  8. The LRRC26 Protein Selectively Alters the Efficacy of BK Channel Activators

    PubMed Central

    Almassy, Janos

    2012-01-01

    Large conductance, Ca2+-activated K channel proteins are involved in a wide range of physiological activities, so there is considerable interest in the pharmacology of large conductance calcium-activated K (BK) channels. One potent activator of BK channels is mallotoxin (MTX), which produces a very large hyperpolarizing shift of the voltage gating of heterologously expressed BK channels and causes a dramatic increase in the activity of BK channels in human smooth muscle cells. However, we found that MTX shifted the steady-state activation of BK channels in native parotid acinar cells by only 6 mV. This was not because the parotid BK isoform (parSlo) is inherently insensitive to MTX as MTX shifted the activation of heterologously expressed parSlo channels by 70 mV. Even though MTX had a minimal effect on steady-state activation of parotid BK channels, it produced an approximate 2-fold speeding of the channel-gating kinetics. The BK channels in parotid acinar cells have a much more hyperpolarized voltage activation range than BK channels in most other cell types. We found that this is probably attributable to an accessory protein, LRRC26, which is expressed in parotid glands: expressed parSlo + LRRC26 channels were resistant to the actions of MTX. Another class of BK activators is the benzimidazalones that includes 1,3-dihydro-1-(2-hydroxy-5-(trifluoromethyl)phenyl)-5-(trifluoromethyl)-2H-benzimidazol-2-one (NS-1619). Although the LRRC26 accessory protein strongly inhibited the ability of MTX to activate BK channels, we found that it had only a small effect on the action of NS-1619 on BK channels. Thus, the LRRC26 BK channel accessory protein selectively alters the pharmacology of BK channels. PMID:21984254

  9. Membrane stretching triggers mechanosensitive Ca2+ channel activation in Chara.

    PubMed

    Kaneko, Toshiyuki; Takahashi, Naoya; Kikuyama, Munehiro

    2009-03-01

    In order to confirm that mechanosensitive Ca(2+) channels are activated by membrane stretching, we stretched or compressed the plasma membrane of Chara by applying osmotic shrinkage or swelling of the cell by varying the osmotic potential of the bathing medium. Aequorin studies revealed that treatments causing membrane stretching induced a transient but large increase in cytoplasmic concentration of Ca(2+) (Delta[Ca(2+)](c)). However, the observed Delta[Ca(2+)](c) decreased during the treatments, resulting in membrane compression. A second experiment was carried out to study the relationship between changes in membrane potential (DeltaE(m)) and stretching or compression of the plasma membrane. Significant DeltaE(m) values, often accompanied by an action potential, were observed during the initial exchange of the bathing medium from a hypotonic medium to a hypertonic one (plasmolysis). DeltaE(m) appears to be triggered by a partial stretching of the membrane as it was peeled from the cell wall. After plasmolysis, other exchanges from hypertonic to hypotonic media, with their accompanying membrane stretching, always induced large DeltaE(m) values and were often accompanied by an action potential. By contrast, action potentials were scarcely observed during other exchanges from hypotonic to hypertonic solutions (=membrane compression). Thus, we concluded that activation of the mechanosensitive channels is triggered by membrane stretching in Chara.

  10. Membrane stretching triggers mechanosensitive Ca2+ channel activation in Chara.

    PubMed

    Kaneko, Toshiyuki; Takahashi, Naoya; Kikuyama, Munehiro

    2009-03-01

    In order to confirm that mechanosensitive Ca(2+) channels are activated by membrane stretching, we stretched or compressed the plasma membrane of Chara by applying osmotic shrinkage or swelling of the cell by varying the osmotic potential of the bathing medium. Aequorin studies revealed that treatments causing membrane stretching induced a transient but large increase in cytoplasmic concentration of Ca(2+) (Delta[Ca(2+)](c)). However, the observed Delta[Ca(2+)](c) decreased during the treatments, resulting in membrane compression. A second experiment was carried out to study the relationship between changes in membrane potential (DeltaE(m)) and stretching or compression of the plasma membrane. Significant DeltaE(m) values, often accompanied by an action potential, were observed during the initial exchange of the bathing medium from a hypotonic medium to a hypertonic one (plasmolysis). DeltaE(m) appears to be triggered by a partial stretching of the membrane as it was peeled from the cell wall. After plasmolysis, other exchanges from hypertonic to hypotonic media, with their accompanying membrane stretching, always induced large DeltaE(m) values and were often accompanied by an action potential. By contrast, action potentials were scarcely observed during other exchanges from hypotonic to hypertonic solutions (=membrane compression). Thus, we concluded that activation of the mechanosensitive channels is triggered by membrane stretching in Chara. PMID:19234734

  11. Heterotrophic activity and biodegradation of labile and refractory compounds by groundwater and stream microbial populations.

    PubMed Central

    Ladd, T I; Ventullo, R M; Wallis, P M; Costerton, J W

    1982-01-01

    The bacteriology and heterotrophic activity of a stream and of nearby groundwater in Marmot Basin, Alberta, Canada, were studied. Acridine orange direct counts indicated that bacterial populations in the groundwater were greater than in the stream. Bacteria that were isolated from the groundwater were similar to species associated with soils. Utilization of labile dissolved organic material as measured by the heterotrophic potential technique with glutamic acid, phenylalanine, and glycolic acid as substrates was generally greater in the groundwater. In addition, specific activity indices for the populations suggested greater metabolic activity per bacterium in the groundwater. 14C-labeled lignocellulose, preferentially labeled in the lignin fraction by feeding Picea engelmannii [14C]phenylalanine, was mineralized by microorganisms in both the groundwater and the stream, but no more than 4% of the added radioactivity was lost as 14CO2 within 960 h. Up to 20% of [3'-14C]cinnamic acid was mineralized by microorganisms in both environments within 500 h. Both microbial populations appear to influence the levels of labile and recalcitrant dissolved organic material in mountain streams. PMID:7125651

  12. An ecological perspective on in-stream temperature: natural heat dynamics and mechanisms of human-caused thermal degradation.

    PubMed

    Poole, G C; Berman, C H

    2001-06-01

    While external factors (drivers) determine the net heat energy and water delivered to a stream, the internal structure of a stream determines how heat and water will be distributed within and exchanged among a stream's components (channel, alluvial aquifer, and riparian zone/floodplain). Therefore, the interaction between external drivers of stream temperature and the internal structure of integrated stream systems ultimately determines channel water temperature. This paper presents a synoptic, ecologically based discussion of the external drivers of stream temperature, the internal structures and processes that insulate and buffer stream temperatures, and the mechanisms of human influence on stream temperature. It provides a holistic perspective on the diversity of natural dynamics and human activities that influence stream temperature, including discussions of the role of the hyporheic zone. Key management implications include: (1) Protecting or reestablishing in-stream flow is critical for restoring desirable thermal regimes in streams. (2) Modified riparian vegetation, groundwater dynamics, and channel morphology are all important pathways of human influence on channel-water temperature and each pathway should be addressed in management plans. (3) Stream temperature research and monitoring programs will be jeopardized by an inaccurate or incomplete conceptual understanding of complex temporal and spatial stream temperature response patterns to anthropogenic influences. (4) Analyses of land-use history and the historical vs contemporary structure of the stream channel, riparian zone, and alluvial aquifer are important prerequisites for applying mechanistic temperature models to develop management prescriptions to meet in-channel temperature goals.

  13. Activation of endogenously expressed ion channels by active complement in the retinal pigment epithelium.

    PubMed

    Genewsky, Andreas; Jost, Ingmar; Busch, Catharina; Huber, Christian; Stindl, Julia; Skerka, Christine; Zipfel, Peter F; Rohrer, Bärbel; Strauß, Olaf

    2015-10-01

    Defective regulation of the alternative pathway of the complement system is believed to contribute to damage of retinal pigment epithelial (RPE) cells in age-related macular degeneration. Thus we investigated the effect of complement activation on the RPE cell membrane by analyzing changes in membrane conductance via patch-clamp techniques and Ca(2+) imaging. Exposure of human ARPE-19 cells to complement-sufficient normal human serum (NHS) (25 %) resulted in a biphasic increase in intracellular free Ca(2+) ([Ca(2+)]i); an initial peak followed by sustained Ca(2+) increase. C5- or C7-depleted sera did not fully reproduce the signal generated by NHS. The initial peak of the Ca(2+) response was reduced by sarcoplasmic Ca(2+)-ATPase inhibitor thapsigargin, L-type channel blockers (R)-(+)-BayK8644 and isradipine, transient-receptor-potential (TRP) channel blocker ruthenium-red and ryanodine receptor blocker dantrolene. The sustained phase was carried by CaV1.3 L-type channels via tyrosine-phosphorylation. Changes in [Ca(2+)]I were accompanied by an abrupt hyperpolarization, resulting from a transient increase in membrane conductance, which was absent under extracellular Ca(2+)- or K(+)-free conditions and blocked by (R)-(+)-BayK8644 or paxilline, a maxiK channel inhibitor. Single-channel recordings confirmed the contribution of maxiK channels. Primary porcine RPE cells responded to NHS in a comparable manner. Pre-incubation with NHS reduced H2O2-induced cell death. In summary, in a concerted manner, C3a, C5a and sC5b-9 increased [Ca(2+)]i by ryanodine-receptor-dependent activation of L-type channels in addition to maxi-K channels and TRP channels absent from any insertion of a lytic pore.

  14. Activation and Regulation of Purinergic P2X Receptor Channels

    PubMed Central

    Coddou, Claudio; Yan, Zonghe; Obsil, Tomas; Huidobro-Toro, J. Pablo

    2011-01-01

    Mammalian ATP-gated nonselective cation channels (P2XRs) can be composed of seven possible subunits, denoted P2X1 to P2X7. Each subunit contains a large ectodomain, two transmembrane domains, and intracellular N and C termini. Functional P2XRs are organized as homomeric and heteromeric trimers. This review focuses on the binding sites involved in the activation (orthosteric) and regulation (allosteric) of P2XRs. The ectodomains contain three ATP binding sites, presumably located between neighboring subunits and formed by highly conserved residues. The detection and coordination of three ATP phosphate residues by positively charged amino acids are likely to play a dominant role in determining agonist potency, whereas an AsnPheArg motif may contribute to binding by coordinating the adenine ring. Nonconserved ectodomain histidines provide the binding sites for trace metals, divalent cations, and protons. The transmembrane domains account not only for the formation of the channel pore but also for the binding of ivermectin (a specific P2X4R allosteric regulator) and alcohols. The N- and C- domains provide the structures that determine the kinetics of receptor desensitization and/or pore dilation and are critical for the regulation of receptor functions by intracellular messengers, kinases, reactive oxygen species and mercury. The recent publication of the crystal structure of the zebrafish P2X4.1R in a closed state provides a major advance in the understanding of this family of receptor channels. We will discuss data obtained from numerous site-directed mutagenesis experiments accumulated during the last 15 years with reference to the crystal structure, allowing a structural interpretation of the molecular basis of orthosteric and allosteric ligand actions. PMID:21737531

  15. Antisense oligodeoxynucleotide inhibition of a swelling-activated cation channel in osteoblast-like osteosarcoma cells

    NASA Technical Reports Server (NTRS)

    Duncan, R. L.; Kizer, N.; Barry, E. L.; Friedman, P. A.; Hruska, K. A.

    1996-01-01

    By patch-clamp analysis, we have shown that chronic, intermittent mechanical strain (CMS) increases the activity of stretch-activated cation channels of osteoblast-like UMR-106.01 cells. CMS also produces a swelling-activated whole-cell conductance (Gm) regulated by varying strain levels. We questioned whether the swelling-activated conductance was produced by stretch-activated cation channel activity. We have identified a gene involved in the increase in conductance by using antisense oligodeoxynucleotides (ODN) derived from the alpha 1-subunit genes of calcium channels found in UMR-106.01 cells (alpha1S, alpha1C, and alpha1D). We demonstrate that alpha 1C antisense ODNs abolish the increase in Gm in response to hypotonic swelling following CMS. Antisense ODNs to alpha1S and alpha1D, sense ODNs to alpha1C, and sham permeabilization had no effect on the conductance increase. In addition, during cell-attached patch-clamp studies, antisense ODNs to alpha1c completely blocked the swelling-activated and stretch-activated nonselective cation channel response to strain. Antisense ODNs to alpha1S treatment produced no effect on either swelling-activated or stretch-activated cation channel activity. There were differences in the stretch-activated and swelling-activated cation channel activity, but whether they represent different channels could not be determined from our data. Our data indicate that the alpha1C gene product is involved in the Gm and the activation of the swelling-activated cation channels induced by CMS. The possibility that swelling-activated cation channel genes are members of the calcium channel superfamily exists, but if alpha1c is not the swelling-activated cation channel itself, then its expression is required for induction of swelling-activated cation channel activity by CMS.

  16. Near-Channel Sources and Sinks along a Mountainous Stream: Establishing the Controls and Time Scales of the Lateral Transfer of Sediment and Carbon

    NASA Astrophysics Data System (ADS)

    Gartner, J. D.; Renshaw, C. E.

    2015-12-01

    River channels exchange sediment, carbon, and other matter with hillslopes and floodplains. An ongoing challenge is to quantify the time and length scales of these lateral interactions, and to establish physical controls on direction of transfer. Here we investigate whether downstream changes in stream power (Ω) can predict near-channel sources or sinks of matter on decadal time scales in a case study of Mink Brook, a 50 km2 watershed in New Hampshire, USA. Building on the Exner equation, we hypothesize that reaches with downstream increases in stream power (Ω↑) exhibit near-channel deposition and accumulation of organic matter, and reaches of downstream decreases in stream power (Ω↓) exhibit near-channel erosion and stripping of organic matter. We measured 210Pbex inventory (an indicator of erosion versus deposition), organic matter inventory, grain size, and depth of alluvium/colluvium in 29 soil pits at 6 cross sections along the brook. Sites had equivalent total Ω for a given storm event. However, 3 cross sections exhibited Ω↑, and 3 exhibited Ω↓. All cross sections showed a general trend of stripping of organic matter and fine sediment particles in the channel, paired with loading of matter at the ~2-year flood elevation. From the ~2- to ~25-year flood elevation, a marked difference appeared between sites. The Ω↑ cross sections exhibited several locations of erosion and stripping of organic matter, as evidenced by low 210Pbex inventories (70 to 1,000 bq m-2), low organic matter inventories (17 to 219 kg m-2), and thin alluvial cover (average 23 cm). The low 210Pbex inventories, below the characteristic 6,000 bq m-2 of stable soil profiles in this region, suggest no areas had consistent deposition over the last century. In contrast, the Ω↓ cross sections exhibited deposition of fine particles and organic matter from the ~2- to ~25-year flood elevation, as evidenced by elevated 210Pbex inventories (up to 9,100 bq m-2), elevated organic matter

  17. Effects of microgravity on liposome-reconstituted cardiac gap junction channeling activity

    NASA Technical Reports Server (NTRS)

    Claassen, D. E.; Spooner, B. S.

    1989-01-01

    Effects of microgravity on cardiac gap junction channeling activity were investigated aboard NASA zero-gravity aircraft. Liposome-reconstituted gap junctions were assayed for channel function during free-fall, and the data were compared with channeling at 1 g. Control experiments tested for 0 g effects on the structural stability of liposomes, and on the enzyme-substrate signalling system of the assay. The results demonstrate that short periods of microgravity do not perturb reconstituted cardiac gap junction channeling activity.

  18. Trypsin-Sensitive, Rapid Inactivation of a Calcium-Activated Potassium Channel

    NASA Astrophysics Data System (ADS)

    Solaro, Christopher R.; Lingle, Christopher J.

    1992-09-01

    Most calcium-activated potassium channels couple changes in intracellular calcium to membrane excitability by conducting a current with a probability that depends directly on submembrane calcium concentration. In rat adrenal chromaffin cells, however, a large conductance, voltage- and calcium-activated potassium channel (BK) undergoes rapid inactivation, suggesting that this channel has a physiological role different than that of other BK channels. The inactivation of the BK channel, like that of the voltage-gated Shaker B potassium channel, is removed by trypsin digestion and channels are blocked by the Shaker B amino-terminal inactivating domain. Thus, this BK channel shares functional and possibly structural homologies with other inactivating voltage-gated potassium channels.

  19. The effect of single cerebroside compounds on activation of BKCa channels.

    PubMed

    Xu, Huina; Qi, Jianhua; Wang, Guangfa; Deng, Hongwen; Qi, Zhi

    2011-02-01

    We have previously shown that a mixture of cerebrosides obtained from dried tubers of herb Typhonium giganteum Engl. plays a neuroprotective role in the ischemic brain through its effect on activation of BK(Ca) channels. It is very curious to know whether a single pure cerebroside compound could activate the BK(Ca) channel as well. This study explored the possible effects of pure cerebroside compounds, termitomycesphins A and B, on the BK(Ca) channel activation. Both termitomycesphins A and B activated the BK(Ca) channels at micromole concentration without significant difference. Termitomycesphin A increased the single channel open probability of the BK(Ca) channels in a dose-dependent manner without modifying the single channel conductance. Termitomycesphin A activated BK(Ca) channel more efficiently when it was applied to the cytoplasmic face of the membrane, suggesting that binding site for termitomycesphin A is located at the cytoplasmic side. Termitomycesphin A shifted the voltage-dependent activation curve to less positive membrane potentials and the Ca(2+)-dependent activation curve of the channel upwards, suggesting that termitomycesphin A could activate the channels even without intracellular free Ca(2+). Furthermore, STREX-deleted BK(Ca) channels were completely insensitive to termitomycesphin A, indicating that STREX domain is required for the activation of the BK(Ca) channel. These data provide evidence that termitomycesphins are potent in stimulating the activity of the BK(Ca) channels. As BK(Ca) channels are associated with pathology of many diseases, termitomycesphins might be used as therapeutic agents for treating these diseases through its regulatory effect on the BK(Ca) channels.

  20. Observations of the Behavior and Distribution of Fish in Relation to the Columbia River Navigation Channel and Channel Maintenance Activities

    SciTech Connect

    Carlson, Thomas J.; Ploskey, Gene R.; Johnson, R. L.; Mueller, Robert P.; Weiland, Mark A.; Johnson, P. N.

    2001-10-19

    This report is a compilation of 7 studies conducted for the U.S. Army Corps of Engineers between 1995 and 1998 which used hydroacoustic methods to study the behavior of migrating salmon in response to navigation channel maintenance activities in the lower Columbia River near river mile 45. Differences between daytime and nighttime behavior and fish densities were noted. Comparisons were made of fish distribution across the river (in the channel, channel margin or near shore) and fish depth upstream and downstream of dikes, dredges, and pile driving areas.

  1. Video streaming technologies using ActiveX and LabVIEW

    NASA Astrophysics Data System (ADS)

    Panoiu, M.; Rat, C. L.; Panoiu, C.

    2015-06-01

    The goal of this paper is to present the possibilities of remote image processing through data exchange between two programming technologies: LabVIEW and ActiveX. ActiveX refers to the process of controlling one program from another via ActiveX component; where one program acts as the client and the other as the server. LabVIEW can be either client or server. Both programs (client and server) exist independent of each other but are able to share information. The client communicates with the ActiveX objects that the server opens to allow the sharing of information [7]. In the case of video streaming [1] [2], most ActiveX controls can only display the data, being incapable of transforming it into a data type that LabVIEW can process. This becomes problematic when the system is used for remote image processing. The LabVIEW environment itself provides little if any possibilities for video streaming, and the methods it does offer are usually not high performance, but it possesses high performance toolkits and modules specialized in image processing, making it ideal for processing the captured data. Therefore, we chose to use existing software, specialized in video streaming along with LabVIEW and to capture the data provided by them, for further use, within LabVIEW. The software we studied (the ActiveX controls of a series of media players that utilize streaming technology) provide high quality data and a very small transmission delay, ensuring the reliability of the results of the image processing.

  2. Calcium ions open a selectivity filter gate during activation of the MthK potassium channel

    NASA Astrophysics Data System (ADS)

    Posson, David J.; Rusinova, Radda; Andersen, Olaf S.; Nimigean, Crina M.

    2015-09-01

    Ion channel opening and closing are fundamental to cellular signalling and homeostasis. Gates that control K+ channel activity were found both at an intracellular pore constriction and within the selectivity filter near the extracellular side but the specific location of the gate that opens Ca2+-activated K+ channels has remained elusive. Using the Methanobacterium thermoautotrophicum homologue (MthK) and a stopped-flow fluorometric assay for fast channel activation, we show that intracellular quaternary ammonium blockers bind to closed MthK channels. Since the blockers are known to bind inside a central channel cavity, past the intracellular entryway, the gate must be within the selectivity filter. Furthermore, the blockers access the closed channel slower than the open channel, suggesting that the intracellular entryway narrows upon pore closure, without preventing access of either the blockers or the smaller K+. Thus, Ca2+-dependent gating in MthK occurs at the selectivity filter with coupled movement of the intracellular helices.

  3. Calcium ions open a selectivity filter gate during activation of the MthK potassium channel.

    PubMed

    Posson, David J; Rusinova, Radda; Andersen, Olaf S; Nimigean, Crina M

    2015-01-01

    Ion channel opening and closing are fundamental to cellular signalling and homeostasis. Gates that control K(+) channel activity were found both at an intracellular pore constriction and within the selectivity filter near the extracellular side but the specific location of the gate that opens Ca(2+)-activated K(+) channels has remained elusive. Using the Methanobacterium thermoautotrophicum homologue (MthK) and a stopped-flow fluorometric assay for fast channel activation, we show that intracellular quaternary ammonium blockers bind to closed MthK channels. Since the blockers are known to bind inside a central channel cavity, past the intracellular entryway, the gate must be within the selectivity filter. Furthermore, the blockers access the closed channel slower than the open channel, suggesting that the intracellular entryway narrows upon pore closure, without preventing access of either the blockers or the smaller K(+). Thus, Ca(2+)-dependent gating in MthK occurs at the selectivity filter with coupled movement of the intracellular helices.

  4. Influence of adding small instream wood on fishes and hydrology within channelized agricultural headwater streams in central Ohio

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Large instream wood is well known for its importance in headwater streams because it promotes the development of pool habitat for fishes and provides them with cover from predators during the summer. However, little is known about the influence of small instream wood (diameter < 10 cm, length < 1 m...

  5. CHNTRN: a CHaNnel TRaNsport model for simulating sediment and chemical distribution in a stream/river network

    SciTech Connect

    Yeh, G.T.

    1983-09-01

    This report presents the development of a CHaNnel TRaNsport model for simulating sediment and chemical distribution in a stream/river network. A particular feature of the model is its capability to deal with the network system that may consist of any number of joined and branched streams/rivers of comparable size. The model employs a numerical method - an integrated compartment method (ICM) - which greatly facilitates the setup of the matrix equation for the discrete field approximating the corresponding continuous field. Most of the possible boundary conditions that may be anticipated in real-world problems are considered. These include junctions, prescribed concentration, prescribed dispersive flux, and prescribed total flux. The model is applied to two case studies: (1) a single river and (2) a five-segment river in a watershed. Results indicate that the model can realistically simulate the behavior of the sediment and chemical variations in a stream/river network. 11 references, 10 figures, 3 tables.

  6. Channel

    NASA Technical Reports Server (NTRS)

    2006-01-01

    [figure removed for brevity, see original site] Context image for PIA03693 Channel

    This channel is located south of Iani Chaos.

    Image information: VIS instrument. Latitude -10.9N, Longitude 345.5E. 17 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

  7. Salmon carcasses increase stream productivity more than inorganic fertilizer pellets: A test on multiple trophic levels in streamside experimental channels

    USGS Publications Warehouse

    Wipfli, Mark S.; Hudson, John P.; Caouette, John P.; Mitchell, N.L.; Lessard, Joanna L.; Heintz, Ron A.; Chaloner, D.T.

    2010-01-01

    Inorganic nutrient amendments to streams are viewed as possible restoration strategies for re-establishing nutrients and stream productivity throughout the western coast of North America, where salmon runs and associated marine-derived nutrient subsidies have declined. In a mesocosm experiment, we examined the short-term (6 weeks) comparative effects of artificial nutrient pellets and salmon carcasses, alone (low and high amounts) and in combination, on stream food webs. Response variables included dissolved nutrient concentrations, biofilm ash-free dry mass (AFDM) and chlorophyll-alevels, macroinvertebrate density, growth and body condition of juvenile coho salmon Oncorhynchus kisutch, and whole-body lipid content of invertebrates and juvenile coho salmon. Most of the response variables were significantly influenced by carcass treatment; the only response variable significantly influenced by fertilizer pellet treatment was soluble reactive phosphorus (SRP) concentration. Ammonium-nitrogen concentration was the only response variable affected by both (low and high) levels of carcass treatment; all others showed no significant response to the two carcass treatment levels. Significant treatment × time interactions were observed for all responses except nitrate; for most responses, significant treatment effects were detected at certain time periods and not others. For example, significantly higher SRP concentrations were recorded earlier in the experiment, whereas significant fish responses were observed later. These results provide evidence that inorganic nutrient additions do not have the same ecological effects in streams as do salmon carcasses, potentially because inorganic nutrient additions lack carbon-based biochemicals and macromolecules that are sequestered directly or indirectly by consumers. Salmon carcasses, preferably deposited naturally during spawning migrations, appear to be far superior to inorganic nutrient amendments for sustaining and restoring

  8. Continuous auroral activity related to high speed streams with interplaneraty ALFV&N wave trains

    NASA Technical Reports Server (NTRS)

    Guarnieri, Fernando L.; Tsurutani, Bruce T.; Gonzalez, Walter D.; Kamide, Yosuke; Zhou, Xiaoyan

    2004-01-01

    We discuss a type of intense magnetospheric/auroral activity that is not always substorms: High-Intensity, Long-Duration, Continuous AE Activity (HILDCAA) events, which occur during high speed solar wind streams. The high speed streams contain large-amplitude, nonlinear Alfvtn waves. Analyses of POLAR UV images, demonstrate that the AE increases/AL decreases in HILDCAAs are not always substorm expansion phases (although some substorms may occur). The associated auroral W energy deposition is throughout a continuous (360') auroral oval. During some image intervals, the dayside aurora is the most remarkable feature. Our hypothesis is that solar wind energy transfer from the solar wind to the magnetosphere/ionosphere is primarily directly driven due to the finite wavelength Alfv6n waves and the rapid dBz/dt variability.

  9. Acute exposure of methylglyoxal leads to activation of KATP channels expressed in HEK293 cells

    PubMed Central

    Yang, Yang; Konduru, Anuhya S; Cui, Ningren; Yu, Lei; Trower, Timothy C; Shi, Weiwei; Shi, Yun; Jiang, Chun

    2014-01-01

    Aim: Highly reactive carbonyl methylglyoxal (MGO) is one of the metabolites excessively produced in diabetes. We have showed that prolonged exposure of vascular smooth muscle cells to MGO leads to instability of the mRNA encoding ATP-sensitive potassium (KATP) channel. In the present study we investigated the effects of MGO on the activity of KATP channels. Methods: Kir6.1/ SUR2B, Kir6.2/SUR2B or Kir6.2Δ36 (a truncated Kir6.2 isoform) alone was expressed in HEK293 cells. Whole-cell currents were recorded in the cells with an Axopatch 200B amplifier. Macroscopic currents and single-channel currents were recorded in giant inside-out patches and normal inside-out patches, respectively. Data were analyzed using Clampfit 9 software. Results: The basal activity of Kir6.1/SUR2B channels was low. The specific KATP channel opener pinacidil (10 μmol/L) could fully activate Kir6.1/SUR2B channels, which was inhibited by the specific KATP channel blocker glibenclamide (10 μmol/L). MGO (0.1-10 mmol/L) dose-dependently activated Kir6.1/SUR2B channels with an EC50 of 1.7 mmol/L. The activation of Kir6.1/SUR2B channels by MGO was reversible upon washout, and could be inhibited completely by glibenclamide. Kir6.2Δ36 channels expressed in HEK293 cells could open automatically, and the channel activity was enhanced in the presence of MGO (3 mmol/L). Single channel recordings showed that MGO (3 mmol/L) markedly increased the open probability of Kir6.1/SUR2B channels, leaving the channel conductance unaltered. Conclusion: Acute application of MGO activates KATP channels through direct, non-covalent and reversible interactions with the Kir6 subunits. PMID:24122011

  10. Quantity-activity relationship of denitrifying bacteria and environmental scaling in streams of a forested watershed

    USGS Publications Warehouse

    O'Connor, B.L.; Hondzo, Miki; Dobraca, D.; LaPara, T.M.; Finlay, J.A.; Brezonik, P.L.

    2006-01-01

    The spatial variability of subreach denitrification rates in streams was evaluated with respect to controlling environmental conditions, molecular examination of denitrifying bacteria, and dimensional analysis. Denitrification activities ranged from 0 and 800 ng-N gsed-1 d-1 with large variations observed within short distances (<50 m) along stream reaches. A log-normal probability distribution described the range in denitrification activities and was used to define low (16% of the probability distributibn), medium (68%), and high (16%) denitrification potential groups. Denitrifying bacteria were quantified using a competitive polymerase chain reaction (cPCR) technique that amplified the nirK gene that encodes for nitrite reductase. Results showed a range of nirK quantities from 103 to 107 gene-copy-number gsed.-1 A nonparametric statistical test showed no significant difference in nirK quantifies among stream reaches, but revealed that samples with a high denitrification potential had significantly higher nirK quantities. Denitrification activity was positively correlated with nirK quantities with scatter in the data that can be attributed to varying environmental conditions along stream reaches. Dimensional analysis was used to evaluate denitrification activities according to environmental variables that describe fluid-flow properties, nitrate and organic material quantities, and dissolved oxygen flux. Buckingham's pi theorem was used to generate dimensionless groupings and field data were used to determine scaling parameters. The resulting expressions between dimensionless NO3- flux and dimensionless groupings of environmental variables showed consistent scaling, which indicates that the subreach variability in denitrification rates can be predicted by the controlling physical, chemical, and microbiological conditions. Copyright 2006 by the American Geophysical Union.

  11. Quantity-activity relationship of denitrifying bacteria and environmental scaling in streams of a forested watershed

    NASA Astrophysics Data System (ADS)

    O'Connor, Ben L.; Hondzo, Miki; Dobraca, Dina; Lapara, Timothy M.; Finlay, Jacques C.; Brezonik, Patrick L.

    2006-12-01

    The spatial variability of subreach denitrification rates in streams was evaluated with respect to controlling environmental conditions, molecular examination of denitrifying bacteria, and dimensional analysis. Denitrification activities ranged from 0 and 800 ng-N gsed-1 d-1 with large variations observed within short distances (<50 m) along stream reaches. A log-normal probability distribution described the range in denitrification activities and was used to define low (16% of the probability distribution), medium (68%), and high (16%) denitrification potential groups. Denitrifying bacteria were quantified using a competitive polymerase chain reaction (cPCR) technique that amplified the nirK gene that encodes for nitrite reductase. Results showed a range of nirK quantities from 103 to 107 gene-copy-number gsed-1. A nonparametric statistical test showed no significant difference in nirK quantities among stream reaches, but revealed that samples with a high denitrification potential had significantly higher nirK quantities. Denitrification activity was positively correlated with nirK quantities with scatter in the data that can be attributed to varying environmental conditions along stream reaches. Dimensional analysis was used to evaluate denitrification activities according to environmental variables that describe fluid-flow properties, nitrate and organic material quantities, and dissolved oxygen flux. Buckingham's pi theorem was used to generate dimensionless groupings and field data were used to determine scaling parameters. The resulting expressions between dimensionless NO3- flux and dimensionless groupings of environmental variables showed consistent scaling, which indicates that the subreach variability in denitrification rates can be predicted by the controlling physical, chemical, and microbiological conditions.

  12. Identification and Characterization of Stretch-Activated Ion Channels in Pollen Protoplasts1

    PubMed Central

    Dutta, Rajiv; Robinson, Kenneth R.

    2004-01-01

    Pollen tube growth requires a Ca2+ gradient, with elevated levels of cytosolic Ca2+ at the growing tip. This gradient's magnitude oscillates with growth oscillation but is always maintained. Ca2+ influx into the growing tip is necessary, and its magnitude also oscillates with growth. It has been widely assumed that stretch-activated Ca2+ channels underlie this influx, but such channels have never been reported in either pollen grains or pollen tubes. We have identified and characterized stretch-activated Ca2+ channels from Lilium longiflorum pollen grain and tube tip protoplasts. The channels were localized to a small region of the grain protoplasts associated with the site of tube germination. In addition, we find a stretch-activated K+ channel as well as a spontaneous K+ channel distributed over the entire grain surface, but neither was present at the germination site or at the tip. Neither stretch-activated channel was detected in the grain protoplasts unless the grains were left in germination medium for at least 1 h before protoplast preparation. The stretch-activated channels were inhibited by a spider venom that is known to block stretch-activated channels in animal cells, but the spontaneous channel was unaffected by the venom. The venom also stopped pollen tube germination and elongation and blocked Ca2+ entry into the growing tip, suggesting that channel function is necessary for growth. PMID:15247410

  13. The Effect of Catchment Urbanization on Nutrient Uptake and Biofilm Enzyme Activity in Lake Superior (USA) Tributary Streams

    EPA Science Inventory

    We used landscape, habitat, and chemistry variables, along with nutrient spiraling metrics and biofilm extracellular enzyme activity (EEA), to assess the response of streams to the level of urbanization within their catchments. For this study nine streams of similar catchment are...

  14. Extensive ice stream activity on the North-East Greenland Continental Shelf

    NASA Astrophysics Data System (ADS)

    Arndt, Jan Erik; Jokat, Wilfried; Dorschel, Boris

    2015-04-01

    Even though approximately 20% of the modern day Greenland ice sheet is drained via the North-East Greenland Continental Shelf (NEGCS), its submarine geomorphology is only poorly resolved. Acting as the main export region for Arctic sea-ice transported southward by the cold East Greenland Current, the NEGCS shows year-round harsh ice conditions that limit the accessibility for research vessels to conduct swath bathymetric surveys. While studies based on radiocarbon dating were arguing if the ice sheet reached on the shelf during full-glacial periods, two studies using high-resolution swath bathymetric data from single cruise tracks showed submarine glacial seafloor features, including mega-scale glacial lineations and retreat moraines that gave direct marine evidence of past ice stream activity at least to the middle shelf in Westwind Trough. We have newly processed swath bathymetry and sub-bottom profiler data of 18 cruises of RV Polarstern from 1985 until 2014. This data was investigated for submarine glacial seafloor features to better constrain the past ice sheet configuration, including its maximum extent and retreat history. Amongst others, we have now first marine evidence for ice stream activity in Norske Trough and in general a more intense ice streaming activity on the shelf. In addition, our data indicates that possibly a small separate ice sheet was present offshore the modern day Greenland coast.

  15. Regulation of epithelial sodium channels in urokinase plasminogen activator deficiency

    PubMed Central

    Chen, Zaixing; Zhao, Runzhen; Zhao, Meimi; Liang, Xinrong; Bhattarai, Deepa; Dhiman, Rohan; Shetty, Sreerama; Idell, Steven

    2014-01-01

    Epithelial sodium channels (ENaC) govern transepithelial salt and fluid homeostasis. ENaC contributes to polarization, apoptosis, epithelial-mesenchymal transformation, etc. Fibrinolytic proteases play a crucial role in virtually all of these processes and are elaborated by the airway epithelium. We hypothesized that urokinase-like plasminogen activator (uPA) regulates ENaC function in airway epithelial cells and tested that possibility in primary murine tracheal epithelial cells (MTE). Both basal and cAMP-activated Na+ flow through ENaC were significantly reduced in monolayers of uPA-deficient cells. The reduction in ENaC activity was further confirmed in basolateral membrane-permeabilized cells. A decrease in the Na+-K+-ATPase activity in the basolateral membrane could contribute to the attenuation of ENaC function in intact monolayer cells. Dysfunctional fluid resolution was seen in uPA-disrupted cells. Administration of uPA and plasmin partially restores ENaC activity and fluid reabsorption by MTEs. ERK1/2, but not Akt, phosphorylation was observed in the cells and lungs of uPA-deficient mice. On the other hand, cleavage of γ ENaC is significantly depressed in the lungs of uPA knockout mice vs. those of wild-type controls. Expression of caspase 8, however, did not differ between wild-type and uPA−/− mice. In addition, uPA deficiency did not alter transepithelial resistance. Taken together, the mechanisms for the regulation of ENaC by uPA in MTEs include augmentation of Na+-K+-ATPase, proteolysis, and restriction of ERK1/2 phosphorylation. We demonstrate for the first time that ENaC may serve as a downstream signaling target by which uPA controls the biophysical profiles of airway fluid and epithelial function. PMID:25172911

  16. The Sodium-Activated Potassium Channel Slack Is Required for Optimal Cognitive Flexibility in Mice

    ERIC Educational Resources Information Center

    Bausch, Anne E.; Dieter, Rebekka; Nann, Yvette; Hausmann, Mario; Meyerdierks, Nora; Kaczmarek, Leonard K.; Ruth, Peter; Lukowski, Robert

    2015-01-01

    "Kcnt1" encoded sodium-activated potassium channels (Slack channels) are highly expressed throughout the brain where they modulate the firing patterns and general excitability of many types of neurons. Increasing evidence suggests that Slack channels may be important for higher brain functions such as cognition and normal intellectual…

  17. Real-time stream processing for active fire monitoring on Landsat 8 direct reception data

    NASA Astrophysics Data System (ADS)

    Bohme, C.; Bouwer, P.; Prinsloo, M. J.

    2015-04-01

    Some remote sensing applications are relatively time insensitive, for others, near-real-time processing (results 30-180 minutes after data reception) offer a viable solution. There are, however, a few applications, such as active wildfire monitoring or ship and airplane detection, where real-time processing and image interpretation offers a distinct advantage. The objective of real-time processing is to provide notifications before the complete satellite pass has been received. This paper presents an automated system for real-time, stream-based processing of data acquired from direct broadcast push-broom sensors for applications that require a high degree of timeliness. Based on this system, a processing chain for active fire monitoring using Landsat 8 live data streams was implemented and evaluated. The real-time processing system, called the FarEarth Observer, is connected to a ground station's demodulator and uses its live data stream as input. Processing is done on variable size image segments assembled from detector lines of the push broom sensor as they are streamed from the satellite, enabling detection of active fires and sending of notifications within seconds of the satellite passing over the affected area, long before the actual acquisition completes. This approach requires performance optimized techniques for radiometric and geometric correction of the sensor data. Throughput of the processing system is kept well above the 400Mbit/s downlink speed of Landsat 8. A latency of below 10 seconds from sensor line acquisition to anomaly detection and notification is achieved. Analyses of geometric and radiometric accuracy and comparisons in latency to traditional near-real-time systems are also presented.

  18. Forcing Open TRP channels: mechanical gating as a unifying activation mechanism

    PubMed Central

    Liu, Chao; Montell, Craig

    2015-01-01

    Transient receptor potential (TRP) proteins are cation channels that comprise a superfamily of molecular sensors that enable animals to detect a wide variety of environmental stimuli. This versatility enables vertebrate and invertebrate TRP channels to function in a diversity of senses, ranging from vision to taste, smell, touch, hearing, proprioception and thermosensation. Moreover, many individual TRP channels are activated through a surprising range of sensory stimuli. The multitasking nature of TRP channels raises the question as to whether seemingly disparate activators gate TRPs through common strategies. In this regard, a recent major advance is the discovery that a phospholipase C (PLC)-dependent signaling cascade activates the TRP channels in Drosophila photoreceptor cells through generation of force in the lipid-bilayer. The premise of this review is that mechanical force is a unifying, common strategy for gating TRP channels. In addition to several TRP channels that function in mechanosensation and are gated by force applied to the cells, changes in temperature and in the concentration of lipophilic second messengers through stimulation of signaling cascades, cause architectural modifications of the cell membrane, which in turn activate TRP channels through mechanical force. Consequently, TRPs are capable of functioning as stretch-activated channels, even in cases in which the stimuli that initiate the signaling cascades are not mechanical. We propose that most TRPs are actually mechanosensitive channels (MSCs), which undergo conformational changes in response to tension imposed on the lipid bilayer, resulting in channel gating. PMID:25998730

  19. Activation and deactivation of vibronic channels in intact phycocyanin rods

    NASA Astrophysics Data System (ADS)

    Nganou, C.; David, L.; Meinke, R.; Adir, N.; Maultzsch, J.; Mkandawire, M.; Pouhè, D.; Thomsen, C.

    2014-02-01

    We investigated the excitation modes of the light-harvesting protein phycocyanin (PC) from Thermosynechococcus vulcanus in the crystalline state using UV and near-infrared Raman spectroscopy. The spectra revealed the absence of a hydrogen out-of-plane wagging (HOOP) mode in the PC trimer, which suggests that the HOOP mode is activated in the intact PC rod, while it is not active in the PC trimer. Furthermore, in the PC trimer an intense mode at 984 cm-1 is assigned to the C-C stretching vibration while the mode at 454 cm-1 is likely due to ethyl group torsion. In contrast, in the similar chromophore phytochromobilin the C5,10,15-D wag mode at 622 cm-1 does not come from a downshift of the HOOP. Additionally, the absence of modes between 1200 and 1300 cm-1 rules out functional monomerization. A correlation between phycocyanobilin (PCB) and phycoerythrobilin (PEB) suggests that the PCB cofactors of the PC trimer appear in a conformation similar to that of PEB. The conformation of the PC rod is consistent with that of the allophycocyanin (APC) trimer, and thus excitonic flow is facilitated between these two independent light-harvesting compounds. This excitonic flow from the PC rod to APC appears to be modulated by the vibration channels during HOOP wagging, C = C stretching, and the N-H rocking in-plan vibration.

  20. Activation and deactivation of vibronic channels in intact phycocyanin rods.

    PubMed

    Nganou, C; David, L; Meinke, R; Adir, N; Maultzsch, J; Mkandawire, M; Pouhè, D; Thomsen, C

    2014-02-28

    We investigated the excitation modes of the light-harvesting protein phycocyanin (PC) from Thermosynechococcus vulcanus in the crystalline state using UV and near-infrared Raman spectroscopy. The spectra revealed the absence of a hydrogen out-of-plane wagging (HOOP) mode in the PC trimer, which suggests that the HOOP mode is activated in the intact PC rod, while it is not active in the PC trimer. Furthermore, in the PC trimer an intense mode at 984 cm(-1) is assigned to the C-C stretching vibration while the mode at 454 cm(-1) is likely due to ethyl group torsion. In contrast, in the similar chromophore phytochromobilin the C5,10,15-D wag mode at 622 cm(-1) does not come from a downshift of the HOOP. Additionally, the absence of modes between 1200 and 1300 cm(-1) rules out functional monomerization. A correlation between phycocyanobilin (PCB) and phycoerythrobilin (PEB) suggests that the PCB cofactors of the PC trimer appear in a conformation similar to that of PEB. The conformation of the PC rod is consistent with that of the allophycocyanin (APC) trimer, and thus excitonic flow is facilitated between these two independent light-harvesting compounds. This excitonic flow from the PC rod to APC appears to be modulated by the vibration channels during HOOP wagging, C = C stretching, and the N-H rocking in-plan vibration. PMID:24588198

  1. Functional reconstitution and channel activity measurements of purified wildtype and mutant CFTR protein.

    PubMed

    Eckford, Paul D W; Li, Canhui; Bear, Christine E

    2015-03-09

    The Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) is a unique channel-forming member of the ATP Binding Cassette (ABC) superfamily of transporters. The phosphorylation and nucleotide dependent chloride channel activity of CFTR has been frequently studied in whole cell systems and as single channels in excised membrane patches. Many Cystic Fibrosis-causing mutations have been shown to alter this activity. While a small number of purification protocols have been published, a fast reconstitution method that retains channel activity and a suitable method for studying population channel activity in a purified system have been lacking. Here rapid methods are described for purification and functional reconstitution of the full-length CFTR protein into proteoliposomes of defined lipid composition that retains activity as a regulated halide channel. This reconstitution method together with a novel flux-based assay of channel activity is a suitable system for studying the population channel properties of wild type CFTR and the disease-causing mutants F508del- and G551D-CFTR. Specifically, the method has utility in studying the direct effects of phosphorylation, nucleotides and small molecules such as potentiators and inhibitors on CFTR channel activity. The methods are also amenable to the study of other membrane channels/transporters for anionic substrates.

  2. Modeling Tidal Stream Energy Extraction and its Effects on Transport Processes in a Tidal Channel and Bay System Using a Three-dimensional Coastal Ocean Model

    SciTech Connect

    Yang, Zhaoqing; Wang, Taiping; Copping, Andrea E.

    2013-02-28

    This paper presents a numerical modeling study for simulating in-stream tidal energy extraction and assessing its effects on the hydrodynamics and transport processes in a tidal channel and bay system connecting to coastal ocean. A marine and hydrokinetic (MHK) module was implemented in a three-dimensional (3-D) coastal ocean model using the momentum sink approach. The MHK model was validated with the analytical solutions for tidal channels under one-dimensional (1-D) conditions. Model simulations were further carried out to compare the momentum sink approach with the quadratic bottom friction approach. The effects of 3-D simulations on the vertical velocity profile, maximum extractable energy, and volume flux reduction across the channel were investigated through a series of numerical experiments. 3-D model results indicate that the volume flux reduction at the maximum extractable power predicted by the 1-D analytical model or two-dimensional (2-D) depth-averaged numerical model may be overestimated. Maximum extractable energy strongly depends on the turbine hub height in the water column, and which reaches a maximum when turbine hub height is located at mid-water depth. Far-field effects of tidal turbines on the flushing time of the tidal bay were also investigated. Model results demonstrate that tidal energy extraction has a greater effect on the flushing time than volume flux reduction, which could negatively affect the biogeochemical processes in estuarine and coastal waters that support primary productivity and higher forms of marine life.

  3. Litter supply as a driver of microbial activity and community structure on decomposing leaves: a test in experimental streams.

    PubMed

    Frossard, Aline; Gerull, Linda; Mutz, Michael; Gessner, Mark O

    2013-08-01

    Succession of newly created landscapes induces profound changes in plant litter supplied to streams. Grasses dominate inputs into open-land streams, whereas tree litter is predominant in forested streams. We set out to elucidate whether the activity and structure of microbial communities on decomposing leaves are determined by litter quality (i.e., grass or tree leaves colonized) or whether changes during riparian succession affecting litter standing stocks on the stream bed play an overriding role. We used 15 outdoor experimental streams to simulate changes in litter supplies reflecting five stages of riparian succession: (i) a biofilm stage with no litter, (ii) an open-land stage characterized by grass litter inputs, (iii) a transitional stage with a mix of grass and tree litter, (iv) an early forested stage with tree litter, and (v) an advanced forested stage with 2.5 times the amount of tree litter. Microbial activities on tree (Betula pendula) and grass (Calamagrostis epigejos) litter were unaffected by either the quantity or type of litter supplied to the experimental streams (i.e., litter standing stock) but differed between the two litter types. This was in stark contrast with bacterial and fungal community structure, which markedly differed on grass and tree litter and, to a lesser extent, also among streams receiving different litter inputs. These patterns reveal distinct responses of microbial community structure and activity to the bulk litter available in streams but consistent responses to the litter type colonized.

  4. GlialCAM, a CLC-2 Cl- Channel Subunit, Activates the Slow Gate of CLC Chloride Channels

    PubMed Central

    Jeworutzki, Elena; Lagostena, Laura; Elorza-Vidal, Xabier; López-Hernández, Tania; Estévez, Raúl; Pusch, Michael

    2014-01-01

    GlialCAM, a glial cell adhesion molecule mutated in megalencephalic leukoencephalopathy with subcortical cysts, targets the CLC-2 Cl- channel to cell contacts in glia and activates CLC-2 currents in vitro and in vivo. We found that GlialCAM clusters all CLC channels at cell contacts in vitro and thus studied GlialCAM interaction with CLC channels to investigate the mechanism of functional activation. GlialCAM slowed deactivation kinetics of CLC-Ka/barttin channels and increased CLC-0 currents opening the common gate and slowing its deactivation. No functional effect was seen for common gate deficient CLC-0 mutants. Similarly, GlialCAM targets the common gate deficient CLC-2 mutant E211V/H816A to cell contacts, without altering its function. Thus, GlialCAM is able to interact with all CLC channels tested, targeting them to cell junctions and activating them by stabilizing the open configuration of the common gate. These results are important to better understand the physiological role of GlialCAM/CLC-2 interaction. PMID:25185546

  5. Chloride Channel 3 Channels in the Activation and Migration of Human Blood Eosinophils in Allergic Asthma

    PubMed Central

    Gaurav, Rohit; Bewtra, Againdra K.

    2015-01-01

    Nicotinamide adenine dinucleotide phosphate (NADPH) oxidase is responsible for respiratory burst in immune cells. Chloride channel 3 (CLC3) has been linked to the respiratory burst in eosinophils and neutrophils. The effect of cytokines and the involvement of CLC3 in the regulation of NADPH-dependent oxidative stress and on cytokine-mediated migration of eosinophils are not known. Human peripheral blood eosinophils were isolated from healthy individuals and from individuals with asthma by negative selection. Real-time PCR was used to detect the expression of NADPH oxidases in eosinophils. Intracellular reactive oxygen species (ROS) measurement was done with flow cytometry. Superoxide generation was measured with transforming growth factor (TGF)-β, eotaxin, and CLC3 blockers. CLC3 dependence of eosinophils in TGF-β– and eotaxin-induced migration was also examined. The messenger RNA (mRNA) transcripts of NADPH oxidase (NOX) 2, dual oxidase (DUOX) 1, and DUOX2 were detected in blood eosinophils, with very low expression of NOX1, NOX3, and NOX5 and no NOX4 mRNA. The level of NOX2 mRNA transcripts increased with disease severity in the eosinophils of subjects with asthma compared with healthy nonatopic volunteers. Change in granularity and size in eosinophils, but no change in intracellular ROS, was observed with phorbol myristate acetate (PMA). PMA, TGF-β, and eotaxin used the CLC3-dependent pathway to increase superoxide radicals. TGF-β and eotaxin induced CLC3-dependent chemotaxis of eosinophils. These findings support the requirement of CLC3 in the activation and migration of human blood eosinophils and may provide a potential novel therapeutic target to regulate eosinophil hyperactivity in allergic airway inflammation in asthma. PMID:25514499

  6. Development of regional curves relating bankfull-channel geometry and discharge to drainage area for streams in Pennsylvania and selected areas of Maryland

    USGS Publications Warehouse

    Chaplin, Jeffrey J.

    2005-01-01

    Natural-stream designs are commonly based on the dimensions of the bankfull channel, which is capable of conveying discharges that transport sediment without excessive erosion or deposition. Regional curves relate bankfull-channel geometry and discharge to drainage area in watersheds with similar runoff characteristics and commonly are utilized by practitioners of natural-stream design to confirm or refute selection of the field-identified bankfull channel. Data collected from 66 streamflow-gaging stations and associated stream reaches between December 1999 and December 2003 were used in one-variable ordinary least-squares regression analyses to develop regional curves relating drainage area to cross-sectional area, discharge, width, and mean depth of the bankfull channel. Watersheds draining to these stations are predominantly within the Piedmont, Ridge and Valley, and Appalachian Plateaus Physiographic Provinces of Pennsylvania and northern Maryland. Statistical analyses of physiography, percentage of watershed area underlain by carbonate bedrock, and percentage of watershed area that is glaciated indicate that carbonate bedrock, not physiography or glaciation, has a controlling influence on the slope of regional curves. Regional curves developed from stations in watersheds underlain by 30 percent or less carbonate bedrock generally had steeper slopes than the corresponding relations developed from watersheds underlain by greater than 30 percent carbonate bedrock. In contrast, there is little evidence to suggest that regional curves developed from stations in the Piedmont or Ridge and Valley Physiographic Province are different from the corresponding relations developed from stations in the Appalachian Plateaus Physiographic Province. On the basis of these findings, regional curves are presented to represent two settings that are independent of physiography: (1) noncarbonate settings characterized by watersheds with carbonate bedrock underlying 30 percent or less

  7. Effects of streamflows on stream-channel morphology in the eastern Niobrara National Scenic River, Nebraska, 1988–2010

    USGS Publications Warehouse

    Schaepe, Nathaniel J.; Alexander, Jason S.; Folz-Donahue, Kiernan

    2016-03-09

    Large changes were measured between 1993 and 1999, and between 1999 and 2003, at many of the fixed-location cross sections. Large changes (that is, greater than 25 percent) in total channel width were measured in all three segments between 1993 and 1999 and again between 1999 and 2003; large increases were dominant between 199

  8. Gabapentin activates ROMK1 channels by a protein kinase A (PKA)-dependent mechanism

    PubMed Central

    Lee, C-H; Tsai, T-S; Liou, H-H

    2008-01-01

    Background and purpose: Gabapentin is an effective anticonvulsant. The major physiological function of renal outer medullary potassium (ROMK1) channels is to maintain the resting membrane potential (RMP). We investigated the effect of gabapentin on ROMK1 channels and the mechanism involved. Experimental approach: Xenopus oocytes were injected with mRNA coding for wild-type or mutant ROMK1 channels and giant inside-out patch-clamp recordings were performed. Key results: Gabapentin increased the activity of ROMK1 channels, concentration-dependently and enhanced the activity of wild-type and an intracellular pH (pHi)-gating residue mutant (K80M) channels over a range of pHi. Gabapentin also increased activity of channels mutated at phosphatidylinositol 4,5-bisphosphate (PIP2)-binding sites (R188Q, R217A and K218A). However, gabapentin failed to enhance channel activity in the presence of protein kinase A (PKA) inhibitors and did not activate phosphorylation site mutants (S44A, S219A or S313A), mutants that mimicked the negative charge carried by a phosphate group bound to a serine (S44D, S219D or S313D), or a mutated channel with a positive charge (S219R). These findings show that gabapentin activates ROMK1 channels independently of the pHi and not via a PIP2-dependent pathway. The effects of gabapentin on ROMK1 channels may be due to a PKA-mediated phosphorylation-induced conformational change, but not to charge–charge interactions. Conclusions and implications: ROMK1 channels are the main channels responsible for maintaining the RMP during cellular excitation. Gabapentin increased the activity of ROMK1 channels by a PKA-dependent mechanism, reducing neuronal excitability, and this may play an important role in its antiepileptic effect. PMID:18311184

  9. Effects of Active Subsidence Vs. Existing Basin Geometry on Fluviodeltaic Channels and Stratal Architecture

    NASA Astrophysics Data System (ADS)

    Liang, M.; Kim, W.; Passalacqua, P.

    2015-12-01

    Tectonic subsidence and basin topography, both determining the accommodation, are fundamental controls on the basin filling processes. Their effects on the fluvial organization and the resultant subsurface patterns remain difficult to predict due to the lack of understanding about interaction between internal dynamics and external controls. Despite the intensive studies on tectonic steering effects on alluvial architecture, how the self-organization of deltaic channels, especially the distributary channel network, respond to tectonics and basin geometry is mostly unknown. Recently physical experiments and field studies have hinted dramatic differences in fluviodeltaic evolution between ones associated with active differential subsidence and existing basin depth. In this work we designed a series of numerical experiments using a reduced-complexity channel-resolving model for delta formation, and tested over a range of localized subsidence rates and topographic depression in basin geometry. We also used a set of robust delta metrics to analyze: i) shoreline planform asymmetry, ii) channel and lobe geometry, iii) channel network pattern, iv) autogenic timescales, and v) subsurface structure. The modeling results show that given a similar final thickness, active subsidence enhances channel branching with smaller channel sand bodies that are both laterally and vertically connected, whereas existing topographic depression causes more large-scale channel avulsions with larger channel sand bodies. In general, both subsidence and existing basin geometry could steer channels and/or lock channels in place but develop distinct channel patterns and thus stratal architecture.

  10. A structural view of ligand-dependent activation in thermoTRP channels

    PubMed Central

    Steinberg, Ximena; Lespay-Rebolledo, Carolyne; Brauchi, Sebastian

    2014-01-01

    Transient Receptor Potential (TRP) proteins are a large family of ion channels, grouped into seven sub-families. Although great advances have been made regarding the activation and modulation of TRP channel activity, detailed molecular mechanisms governing TRP channel gating are still needed. Sensitive to electric, chemical, mechanical, and thermal cues, TRP channels are tightly associated with the detection and integration of sensory input, emerging as a model to study the polymodal activation of ion channel proteins. Among TRP channels, the temperature-activated kind constitute a subgroup by itself, formed by Vanilloid receptors 1–4, Melastatin receptors 2, 4, 5, and 8, TRPC5, and TRPA1. Some of the so-called “thermoTRP” channels participate in the detection of noxious stimuli making them an interesting pharmacological target for the treatment of pain. However, the poor specificity of the compounds available in the market represents an important obstacle to overcome. Understanding the molecular mechanics underlying ligand-dependent modulation of TRP channels may help with the rational design of novel synthetic analgesics. The present review focuses on the structural basis of ligand-dependent activation of TRPV1 and TRPM8 channels. Special attention is drawn to the dissection of ligand-binding sites within TRPV1, PIP2-dependent modulation of TRP channels, and the structure of natural and synthetic ligands. PMID:24847275

  11. Leaf Associated Microbial Activities in a Stream Affected by Acid Mine Drainage

    NASA Astrophysics Data System (ADS)

    Schlief, Jeanette

    2004-11-01

    Microbial activity was assessed on birch leaves and plastic strips during 140 days of exposure at three sites in an acidic stream of the Lusatian post-mining landscape, Germany. The sites differed in their degrees of ochre deposition and acidification. The aim of the study was (1) to follow the microbial activities during leaf colonization, (2) to compare the effect of different environmental conditions on leaf associated microbial activities, and (3) to test the microbial availability of leaf litter in acidic mining waters. The activity peaked after 49 days and subsequently decreased gradually at all sites. A formation of iron plaques on leaf surfaces influenced associated microbial activity. It seemed that these plaques inhibit the microbial availability of leaf litter and serve as a microbial habitat by itself. (

  12. The activity of the TRP-like channel depends on its expression system

    PubMed Central

    Lev, Shaya; Katz, Ben; Minke, Baruch

    2012-01-01

    The Drosophila light activated TRP and TRPL channels have been a model for TRPC channel gating. Several gating mechanisms have been proposed following experiments conducted on photoreceptor and tissue cultured cells. However, conclusive evidence for any mechanism is still lacking. Here, we show that the Drosophila TRPL channel expressed in tissue cultured cells is constitutively active in S2 cells but is silent in HEK cells. Modulations of TRPL channel activity in different expression system by pharmacology or specific enzymes, which change the lipid content of the plasma membrane, resulted in conflicting effects. These findings demonstrate the difficulty in elucidating TRPC gating, as channel behavior is expression system dependent. However, clues on the gating mechanism may arise from understanding how different expression systems affect TRPC channel activation. PMID:22627924

  13. Dysfunctional Hyperpolarization-Activated Cyclic Nucleotide-gated Ion Channels in Cardiac Diseases

    PubMed Central

    Zhao, Xiaoqi; Gu, Tianxiang

    2016-01-01

    Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels are reverse voltage-dependent, and their activation depends on the hyperpolarization of the membrane and may be directly or indirectly regulated by the cyclic adenosine monophosphate (cAMP) or other signal-transduction cascades. The distribution, quantity and activation states of HCN channels differ in tissues throughout the body. Evidence exhibits that HCN channels play critical roles in the generation and conduction of the electrical impulse and the physiopathological process of some cardiac diseases. They may constitute promising drug targets in the treatment of these cardiac diseases. Pharmacological treatment targeting HCN channels is of benefit to these cardiac conditions. PMID:27556324

  14. Removal of VOCs from humidified gas streams using activated carbon cloth

    USGS Publications Warehouse

    Cal, M.P.; Rood, M.J.; Larson, S.M.

    1996-01-01

    This research investigates the effects of relative humidity (RH) on the adsorption of soluble (acetone) and insoluble (benzene) volatile organic compounds (VOCs) with activated carbon cloths (ACC). A gravimetric balance was used in conjunction with a gas chromatograph/mass spectrophotometer to determine the individual amounts of water and VOC adsorbed on an ACC sample. RH values from 0 to 90% and organic concentrations from 350 to 1000 ppmv were examined. The presence of water vapor in the gas-stream along with acetone (350 and 500 ppmv) had little effect on the adsorption capacity of acetone even at 90% RH. Water vapor in the gas stream had little effect on the adsorption capacity of benzene (500 ppmv) until about 65% RH, when a rapid decrease resulted in the adsorption capacity of benzene with increasing RH. This RH was also about where capillary condensation of water vapor occurs within ACC pores. Water vapor condenses within the ACC pores, making them unavailable for benzene adsorption. Increasing benzene concentration can have a significant effect on the amount of water vapor adsorbed. At 86% RH and 500 ppmv, 284 mg/g water was adsorbed, while at 86% RH and 1000 ppmv, only 165 mg/g water was adsorbed. Water vapor was more inhibitory for benzene adsorption as benzene concentration in the gas stream decreased. Copyright ?? 1996 Elsevier Science Ltd.

  15. Phototrophic biofilm activity and dynamics of diurnal Cd cycling in a freshwater stream.

    PubMed

    Beck, Aaron J; Janssen, Felix; Polerecky, Lubos; Herlory, Olivier; De Beer, Dirk

    2009-10-01

    Diel cycles of dissolved cationic metal concentrations commonly occur in freshwater streams in apparent response to coincident cycles in water quality parameters (pH, O2, temperature). Hourly sampling of the Cd-contaminated Riou Mort (France) revealed large diel cycles in "total" dissolved Cd (232-357 nM; < 0.45 microm) and "truly" dissolved Cd (56-297 nM; < 0.02 microm) which were strongly correlated with changes in water pH. Using measured fluxes, a dissolved O2 model was constructed that indicated that benthic metabolic activities, respiration and photosynthesis, were responsible for the diel O2 (and thus, CO2 and pH) variation in the stream. However, microsensor measurements also showed that the pH changes occurred at the biofilm interface earlier than in the bulk water column. This difference in timing was reflected in the Cd dynamics, where pH-controlled sorption effects caused Cd partitioning from the truly dissolved pool onto the biofilm in the morning, and from the truly dissolved pool onto large colloids (0.02-0.45 microm) later in the day. Because this process causes large changes in the bioavailable Cd fraction, it has significant implications for Cd toxicity in freshwater streams. This study demonstrates the profound control of benthic microbiological processes on the cycling of heavy metals in aquatic systems.

  16. Mobility of heavy metals from tailings to stream waters in a mining activity contaminated site.

    PubMed

    Concas, A; Ardau, C; Cristini, A; Zuddas, P; Cao, G

    2006-04-01

    In this paper the results of a recent characterization of Rio Piscinas (SW of Sardinia, Italy) hydrological basin are reported. In such area (about 50 km2), previous mining activities caused a serious heavy metal contamination of surface waters, groundwater, soils and biota. Acid mine drainage phenomena were observed in the area. The main sources of contamination are the tailings stored in mine tunnels and abandoned along fluvial banks. A methodological approach was adopted in order to identify relations between tailings and water contamination. Representative samples of tailings and stream sediments samples were collected. XRD analyses were performed for mineralogical characterization, while acid digestion was carried out for determining metal contents. Batch sequential leaching tests were performed in order to assess metal mobility. Also groundwater and stream water were sampled in specific locations and suitably characterized. All information collected allowed the understanding of the effect of tailings on water contamination, thus contributing to the qualitative prediction of pollution evolution on the basis of metal mobility. Finally, a potential remediation strategy of stream water is proposed.

  17. Rock riprap design for protection of stream channels near highway structures; Volume 2, Evaluation of Riprap design procedures

    USGS Publications Warehouse

    Blodgett, J.C.; McConaughy, C.E.

    1986-01-01

    In volume 2, seven procedures now being used for design of rock riprap installations were evaluated using data from 26 field sites. Four basic types of riprap failures were identified: Particle erosion, translational slide, modified slump, and slump. Factors associated with riprap failure include stone size , bank side slope, size gradation, thickness, insufficient toe or endwall, failure of the bank material, overtopping during floods, and geomorphic changes in the channel. A review of field data and the design procedures suggests that estimates of hydraulic forces acting on the boundary based on flow velocity rather than shear stress are more reliable. Several adjustments for local conditions, such as channel curvature, superelevation, or boundary roughness, may be unwarranted in view of the difficulty in estimating critical hydraulic forces for which the riprap is to be designed. Success of the riprap is related not only to the appropriate procedure for selecting stone size, but also to the reliability of estimated hydraulic and channel factors applicable to the site. (See also W89-04910) (Author 's abstract)

  18. Effects of streamflows on stream-channel morphology in the eastern Niobrara National Scenic River, Nebraska, 1988–2010

    USGS Publications Warehouse

    Schaepe, Nathaniel J.; Alexander, Jason S.; Folz-Donahue, Kiernan

    2016-03-09

    Changes in channel metrics generally corresponded to changes in streamflow conditions, but other than changes in incipient flood-plain area, these changes were small and were not measured in all three segments simultaneously. Increases in total channel width (except in segment 1) and incipient flood-plain area between 1993 and 1999 corresponded to increases in streamflow. Channel narrowing (except in segment 1) between 1999 and 2003 corresponded to lower summer streamflows and extended durations of very low summer streamflow. Although the pattern of low summer streamflow and extended durations of very low summer streamflow continued during the 2004–6 period and at the beginning of the 2007–10 period, no further narrowing was measured. Consistent tributary summer inflows help to explain the resistance of segments 2 and 3 to further narrowing. Because segment 1 is already much narrower than segments 2 and 3, its average current velocity is likely to be swifter and, therefore, competent to offset further effects of the processes that led to its narrowness.

  19. Classical-quantum arbitrarily varying wiretap channel: Ahlswede dichotomy, positivity, resources, super-activation

    NASA Astrophysics Data System (ADS)

    Boche, Holger; Cai, Minglai; Deppe, Christian; Nötzel, Janis

    2016-08-01

    We establish the Ahlswede dichotomy for arbitrarily varying classical-quantum wiretap channels, i.e., either the deterministic secrecy capacity of the channel is zero, or it equals its randomness-assisted secrecy capacity. We analyze the secrecy capacity of these channels when the sender and the receiver use various resources. It turns out that randomness, common randomness, and correlation as resources are very helpful for achieving a positive secrecy capacity. We prove the phenomenon "super-activation" for arbitrarily varying classical-quantum wiretap channels, i.e., two channels, both with zero deterministic secrecy capacity, if used together allow perfect secure transmission.

  20. A Modeling Study of In-stream Tidal Energy Extraction and Its Potential Environmental Impacts in a Tidal Channel and Bay System

    NASA Astrophysics Data System (ADS)

    Wang, T.; Yang, Z.; Copping, A. E.

    2012-12-01

    In recent years, there has been growing interest in harnessing in-stream tidal energy in response to concerns of increasing energy demand and to mitigate climate change impacts. While efforts have been made to assess and map available tidal energy resources using numerical models, little attention has been paid directly quantifying the associated potential environmental impacts as part of tidal energy generation. This paper presents the development of a tidal turbine module within a three-dimensional (3-D) unstructured grid coastal ocean model. The model is used to investigate in-stream tidal energy extraction and associated impacts on estuarine hydrodynamic and biological processes in a stratified estuarine system. A series of numerical experiments with varying numbers and configurations of turbines were carried out to assess the changes in the hydrodynamics and biological processes in the tidal channel and bay system due to tidal energy extraction. Model results show the maximum extractable energy depends strongly on the turbine hub height, and that the effects of energy extraction on the flow fields vary vertically. Preliminary model results also indicate that extraction of tidal energy increases vertical mixing and decreases flushing rate in the estuary. As one of the early modeling efforts aimed directly at examining the impacts of tidal energy extraction on estuarine circulation and biological processes, this study demonstrates that numerical models can serve as a very useful tool for this purpose. However, careful efforts are warranted to address system-specific environmental issues in real world, complex estuarine systems.

  1. Resting state activity and the "stream of consciousness" in schizophrenia--neurophenomenal hypotheses.

    PubMed

    Northoff, Georg

    2015-01-01

    Schizophrenia is a multifaceted disorder with various symptoms including auditory hallucinations, egodisturbances, passivity phenomena, and delusions. Recent neurobiological approaches have focused on, especially, the abnormal contents of consciousness, the "substantive parts" as James said, to associate them with the neural mechanisms related to sensory, motor, and cognitive functions, and the brain's underlying stimulus-induced or task-evoked activity. This leaves open, however, the neural mechanisms that provide the temporal linkage or glue between the various contents, the transitive parts that makes possible the "stream of consciousness." Interestingly, schizophrenic patients seem to suffer from abnormalities specifically in the "transitive parts" when they experience contents as temporally disconnected or fragmented which in phenomenological psychiatry has been described as "temporal fragmentation." The aim of this article is to develop so-called neurophenomenal hypothesis about the direct relationship between phenomenal features of the "stream of consciousness," the "transitive parts," and the specific neuronal mechanisms in schizophrenia as based on healthy subjects. Rather than emphasizing stimulus-induced and task-evoked activity and sensory and lateral prefrontal cortical regions as in neurocognitive approaches with their focus on the "substantive parts," the focus shifts here to the brain's intrinsic activity, its resting state activity, which may account for the temporal linkage or glue between the contents of consciousness, the transitive parts.

  2. Resting state activity and the "stream of consciousness" in schizophrenia--neurophenomenal hypotheses.

    PubMed

    Northoff, Georg

    2015-01-01

    Schizophrenia is a multifaceted disorder with various symptoms including auditory hallucinations, egodisturbances, passivity phenomena, and delusions. Recent neurobiological approaches have focused on, especially, the abnormal contents of consciousness, the "substantive parts" as James said, to associate them with the neural mechanisms related to sensory, motor, and cognitive functions, and the brain's underlying stimulus-induced or task-evoked activity. This leaves open, however, the neural mechanisms that provide the temporal linkage or glue between the various contents, the transitive parts that makes possible the "stream of consciousness." Interestingly, schizophrenic patients seem to suffer from abnormalities specifically in the "transitive parts" when they experience contents as temporally disconnected or fragmented which in phenomenological psychiatry has been described as "temporal fragmentation." The aim of this article is to develop so-called neurophenomenal hypothesis about the direct relationship between phenomenal features of the "stream of consciousness," the "transitive parts," and the specific neuronal mechanisms in schizophrenia as based on healthy subjects. Rather than emphasizing stimulus-induced and task-evoked activity and sensory and lateral prefrontal cortical regions as in neurocognitive approaches with their focus on the "substantive parts," the focus shifts here to the brain's intrinsic activity, its resting state activity, which may account for the temporal linkage or glue between the contents of consciousness, the transitive parts. PMID:25150784

  3. Arecoline inhibits intermediate-conductance calcium-activated potassium channels in human glioblastoma cell lines.

    PubMed

    So, Edmund Cheung; Huang, Yan-Ming; Hsing, Chung-Hsi; Liao, Yu-Kai; Wu, Sheng-Nan

    2015-07-01

    Arecoline (ARE) is an alkaloid-type natural product from areca nut. This compound has numerous pharmacological and toxicological effects. Whether this agent interacts with ion channels to perturb functional activity of cells remains unknown. The effects of ARE on ionic currents were studied in glioma cell lines (U373 and U87MG) using patch-clamp technique. Like TRAM-34(1-[(2-chlorophenyl)-diphenylmethyl]pyrazole), ARE suppressed the amplitude of whole-cell voltage-gated K(+) currents in U373 cells elicited by a ramp voltage clamp. In cell-attached configuration, ARE did not modify the single-channel conductance of intermediate-conductance Ca(2+)-activated K(+) (IKCa) channels; however, it did reduce channel activity. Its inhibition of IKCa channels was accompanied by a significant lengthening in the slow component of mean closed time of IKCa channels. Based on minimal kinetic scheme, the dissociation constant (KD) required for ARE-mediated prolongation of mean closed time was 11.2µM. ARE-induced inhibition of IKCa channels was voltage-dependent. Inability of ARE to perturb the activity of large-conductance Ca(2+)-activated K(+) (BKCa) channels was seen. Under current-clamp recordings, ARE depolarized the membrane of U373 cells and DCEBIO reversed ARE-induced depolarization. Similarly, ARE suppressed IKCa-channel activities in oral keratinocytes. This study provides the evidence that ARE block IKCa channels in a concentration, voltage and state-dependent manner. ARE-induced block of IKCa channels is unrelated to the binding of muscarinic receptors. The effects of ARE on these channels may partially be responsible for the underlying cellular mechanisms by which it influences the functional activities of glioma cells or oral keratinocytes, if similar findings occur in vivo.

  4. Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal.

    PubMed

    Lees-Green, Rachel; Gibbons, Simon J; Farrugia, Gianrico; Sneyd, James; Cheng, Leo K

    2014-04-15

    Interstitial cells of Cajal (ICC) act as pacemaker cells in the gastrointestinal tract by generating electrical slow waves to regulate rhythmic smooth muscle contractions. Intrinsic Ca(2+) oscillations in ICC appear to produce the slow waves by activating pacemaker currents, currently thought to be carried by the Ca(2+)-activated Cl(-) channel anoctamin 1 (Ano1). In this article we present a novel model of small intestinal ICC pacemaker activity that incorporates store-operated Ca(2+) entry and a new model of Ano1 current. A series of simulations were carried out with the ICC model to investigate current controversies about the reversal potential of the Ano1 Cl(-) current in ICC and to predict the characteristics of the other ion channels that are necessary to generate slow waves. The model results show that Ano1 is a plausible pacemaker channel when coupled to a store-operated Ca(2+) channel but suggest that small cyclical depolarizations may still occur in ICC in Ano1 knockout mice. The results predict that voltage-dependent Ca(2+) current is likely to be negligible during the slow wave plateau phase. The model shows that the Cl(-) equilibrium potential is an important modulator of slow wave morphology, highlighting the need for a better understanding of Cl(-) dynamics in ICC.

  5. Selenium contents in tobacco and main stream cigarette smoke determined using neutron activation analysis

    SciTech Connect

    Sorak-Pokrajac, M.; Dermelj, M.; Slejkovec, Z.

    1994-01-01

    In the domain of the essential trace elements, the role of selenium is extremely important. As one of the volatile elements it can be partly absorbed through the pulmonary system during smoking and transported to different organs of the body. Thus a knowledge of its concentration levels in various sorts of tobacco and in the smoke of commercial cigarettes, as well as in the same type of cigarettes from plants treated with selenium, is of interest for various research fields. The purpose of this contribution is to present reliable quantitative data on selenium contents in tobacco, soil, and main stream cigarette smoke, obtained by destructive neutron activation analysis.

  6. Regulation of Arterial Tone by Activation of Calcium-Dependent Potassium Channels

    NASA Astrophysics Data System (ADS)

    Brayden, Joseph E.; Nelson, Mark T.

    1992-04-01

    Blood pressure and tissue perfusion are controlled in part by the level of intrinsic (myogenic) vascular tone. However, many of the molecular determinants of this response are unknown. Evidence is now presented that the degree of myogenic tone is regulated in part by the activation of large-conductance calcium-activated potassium channels in arterial smooth muscle. Tetraethylammonium ion (TEA^+) and charybdotoxin (CTX), at concentrations that block calcium-activated potassium channels in smooth muscle cells isolated from cerebral arteries, depolarized and constricted pressurized cerebral arteries with myogenic tone. Both TEA^+ and CTX had little effect on arteries when intracellular calcium was reduced by lowering intravascular pressure or by blocking calcium channels. Elevation of intravascular pressure through membrane depolarization and an increase in intracellular calcium may activate calcium-activated potassium channels. Thus, these channels may serve as a negative feedback pathway to control the degree of membrane depolarization and vasoconstriction.

  7. [Effects of calcium-activated chloride channels on vascular activity of rat cerebral basilar artery].

    PubMed

    Wang, Rui; Li, Li; Ma, Ke-Tao; Si, Jun-Qiang

    2014-06-25

    This study investigated the role of calcium-activated Cl⁻ channels (CaCCs) in mediating vasomotor activity of cerebral basilar artery (BA) of Wistar rat. Pressure myograph was used to examine the changes in diameter of isolated BA to vasoactive reagents. The results showed that (1) The rate of pressure-induced vasomotor activity was 78.6% (n = 28) in BA from 0 to 100 mmHg working pressure. The contractile phase of the response was faster than the relaxation phase; (2) The amplitude of contraction was (62.6 ± 6.4) µm (n = 22), the frequency of contraction was variable and the highest value was 8.0 ± 2.3 per 5 min at 60 mmHg working pressure (n = 22); (3) The pressure-induced vasomotor activity of BA was markedly attenuated when Ca²⁺ was removed from medium; (4) The pressure-induced vasomotor activity was blocked by voltage dependent Ca²⁺ channel blocker nimodipine; (5) The pressure-induced vasomotor was inhibited by CaCC antagonists NFA and NPPB. These results suggest that the pressure-induced vasomotor activity of isolated BA is associated with Ca²⁺ influx that activates CaCCs.

  8. The synaptic vesicle protein synaptophysin: purification and characterization of its channel activity.

    PubMed Central

    Gincel, Dan; Shoshan-Barmatz, Varda

    2002-01-01

    The synaptic vesicle protein synaptophysin was solubilized from rat brain synaptosomes with a relatively low concentration of Triton X-100 (0.2%) and was highly purified (above 95%) using a rapid single chromatography step on hydroxyapatite/celite resin. Purified synaptophysin was reconstituted into a planar lipid bilayer and the channel activity of synaptophysin was characterized. In asymmetric KCl solutions (cis 300 mM/trans 100 mM), synaptophysin formed a fast-fluctuating channel with a conductance of 414 +/- 13 pS at +60 mV. The open probability of synaptophysin channels was decreased upon depolarization, and channels were found to be cation-selective. Synaptophysin channels showed higher selectivity for K(+) over Cl(-) (P(K(+))/P(Cl(-)) > 8) and preferred K(+) over Li(+), Na(+), Rb(+), Cs(+), or choline(+). The synaptophysin channel is impermeable to Ca(2+), which has no effect on its channel activity. This study is the second demonstration of purified synaptophysin channel activity, but the first biophysical characterization of its channel properties. The availability of large amounts of purified synaptophysin and of its characteristic channel properties might help to establish the role of synaptophysin in synaptic transmission. PMID:12496091

  9. Chemoselective tarantula toxins report voltage activation of wild-type ion channels in live cells.

    PubMed

    Tilley, Drew C; Eum, Kenneth S; Fletcher-Taylor, Sebastian; Austin, Daniel C; Dupré, Christophe; Patrón, Lilian A; Garcia, Rita L; Lam, Kit; Yarov-Yarovoy, Vladimir; Cohen, Bruce E; Sack, Jon T

    2014-11-01

    Electrically excitable cells, such as neurons, exhibit tremendous diversity in their firing patterns, a consequence of the complex collection of ion channels present in any specific cell. Although numerous methods are capable of measuring cellular electrical signals, understanding which types of ion channels give rise to these signals remains a significant challenge. Here, we describe exogenous probes which use a novel mechanism to report activity of voltage-gated channels. We have synthesized chemoselective derivatives of the tarantula toxin guangxitoxin-1E (GxTX), an inhibitory cystine knot peptide that binds selectively to Kv2-type voltage gated potassium channels. We find that voltage activation of Kv2.1 channels triggers GxTX dissociation, and thus GxTX binding dynamically marks Kv2 activation. We identify GxTX residues that can be replaced by thiol- or alkyne-bearing amino acids, without disrupting toxin folding or activity, and chemoselectively ligate fluorophores or affinity probes to these sites. We find that GxTX-fluorophore conjugates colocalize with Kv2.1 clusters in live cells and are released from channels activated by voltage stimuli. Kv2.1 activation can be detected with concentrations of probe that have a trivial impact on cellular currents. Chemoselective GxTX mutants conjugated to dendrimeric beads likewise bind live cells expressing Kv2.1, and the beads are released by channel activation. These optical sensors of conformational change are prototype probes that can indicate when ion channels contribute to electrical signaling. PMID:25331865

  10. Tamoxifen does not inhibit the swell activated chloride channel in human neutrophils during the respiratory burst

    SciTech Connect

    Ahluwalia, Jatinder

    2008-10-31

    Effective functioning of neutrophils relies upon electron translocation through the NADPH oxidase (NOX). The electron current generated (I{sub e}) by the neutrophil NADPH oxidase is electrogenic and rapidly depolarises the membrane potential in activated human neutrophils. Swelling activated chloride channels have been demonstrated in part to counteract the depolarisation generated by the NADPH oxidase I{sub e}. In the present study, the effects of inhibitors of swell activated chloride channels on ROS production and on the swelling activated chloride conductance was investigated in activated human neutrophils. Tamoxifen (10 {mu}M), a specific inhibitor for swell activated chloride channels in neutrophils, completely inhibited both the PMA and FMLP stimulated respiratory burst. This inhibition of the neutrophil respiratory burst was not due to the blocking effect of tamoxifen on the swelling activated chloride conductance in these cells. These results demonstrate that a tamoxifen insensitive swell activated chloride channel has important significance during the neutrophil respiratory burst.

  11. Oxidized glutathione mediates cation channel activation in calf vascular endothelial cells during oxidant stress.

    PubMed

    Koliwad, S K; Elliott, S J; Kunze, D L

    1996-08-15

    1. The oxidant, tert-butylhydroperoxide (tBuOOH) depolarizes calf pulmonary artery endothelial cells by activating a non-selective cation channel. To identify the molecular mediator of channel activation during oxidant stress, the patch-clamp technique was used to compare tBuOOH-induced changes in membrane potential and channel activity with those induced by oxidized glutathione (GSSG), a cytosolic product of oxidant metabolism. 2. When recording pipettes contained GSSG (2 mM), whole-cell zero-current potential measured immediately following pipette break-in was not different from control values (-57 mV). However, within 20 min of break-in, zero-current potential was depolarized to -7 mV. The time course of depolarization was dependent on the concentration of GSSG and was accelerated by inhibition of GSSG metabolism. 3. In excised membrane patches, channels were activated by internal GSSG, but not by internal tBuOOH, reduced glutathione (GSH), or external GSSG. Channels were equal in size (28 pS) and in ionic selectivity to those activated by incubation of intact cells with tBuOOH. As little as 20 microM GSSG was sufficient to maximally activate channels. However, the time course of channel activation was concentration dependent between 20 microM and 2 mM GSSG. 4. Channel activation by GSSG was reversed by GSH and by increasing the [GSH]:[GSSG] ratio. Likewise, channel activation by pre-incubation of intact cells with tBuOOH was reversed by GSH applied after patch excision. 5. These results strongly suggest that GSSG is an endogenous intracellular mediator of channel activation and depolarization during oxidant stress. PMID:8866350

  12. Role of Calcium-activated Potassium Channels in Atrial Fibrillation Pathophysiology and Therapy.

    PubMed

    Diness, Jonas G; Bentzen, Bo H; Sørensen, Ulrik S; Grunnet, Morten

    2015-11-01

    Small-conductance Ca(2+)-activated potassium (SK) channels are relative newcomers within the field of cardiac electrophysiology. In recent years, an increased focus has been given to these channels because they might constitute a relatively atrial-selective target. This review will give a general introduction to SK channels followed by their proposed function in the heart under normal and pathophysiological conditions. It is revealed how antiarrhythmic effects can be obtained by SK channel inhibition in a number of species in situations of atrial fibrillation. On the contrary, the beneficial effects of SK channel inhibition in situations of heart failure are questionable and still needs investigation. The understanding of cardiac SK channels is rapidly increasing these years, and it is hoped that this will clarify whether SK channel inhibition has potential as a new anti-atrial fibrillation principle. PMID:25830485

  13. Role of Calcium-activated Potassium Channels in Atrial Fibrillation Pathophysiology and Therapy.

    PubMed

    Diness, Jonas G; Bentzen, Bo H; Sørensen, Ulrik S; Grunnet, Morten

    2015-11-01

    Small-conductance Ca(2+)-activated potassium (SK) channels are relative newcomers within the field of cardiac electrophysiology. In recent years, an increased focus has been given to these channels because they might constitute a relatively atrial-selective target. This review will give a general introduction to SK channels followed by their proposed function in the heart under normal and pathophysiological conditions. It is revealed how antiarrhythmic effects can be obtained by SK channel inhibition in a number of species in situations of atrial fibrillation. On the contrary, the beneficial effects of SK channel inhibition in situations of heart failure are questionable and still needs investigation. The understanding of cardiac SK channels is rapidly increasing these years, and it is hoped that this will clarify whether SK channel inhibition has potential as a new anti-atrial fibrillation principle.

  14. Glacially-megalineated limestone terrain of Anticosti Island, Gulf of St. Lawrence, Canada; onset zone of the Laurentian Channel Ice Stream

    NASA Astrophysics Data System (ADS)

    Eyles, Nick; Putkinen, Niko

    2014-03-01

    postulated Laurentian Channel Ice Stream (LCIS) within the Gulf of St. Lawrence sector of the Laurentide Ice Sheet.

  15. Selective disruption of high sensitivity heat activation but not capsaicin activation of TRPV1 channels by pore turret mutations.

    PubMed

    Cui, Yuanyuan; Yang, Fan; Cao, Xu; Yarov-Yarovoy, Vladimir; Wang, KeWei; Zheng, Jie

    2012-04-01

    The capsaicin receptor transient receptor potential vanilloid (TRPV)1 is a highly heat-sensitive ion channel. Although chemical activation and heat activation of TRPV1 elicit similar pungent, painful sensation, the molecular mechanism underlying synergistic activation remains mysterious. In particular, where the temperature sensor is located and whether heat and capsaicin share a common activation pathway are debated. To address these fundamental issues, we searched for channel mutations that selectively affected one form of activation. We found that deletion of the first 10 amino acids of the pore turret significantly reduced the heat response amplitude and shifted the heat activation threshold, whereas capsaicin activation remained unchanged. Removing larger portions of the turret disrupted channel function. Introducing an artificial sequence to replace the deleted region restored sensitive capsaicin activation in these nonfunctional channels. The heat activation, however, remained significantly impaired, with the current exhibiting diminishing heat sensitivity to a level indistinguishable from that of a voltage-gated potassium channel, Kv7.4. Our results demonstrate that heat and capsaicin activation of TRPV1 are structurally and mechanistically distinct processes, and the pore turret is an indispensible channel structure involved in the heat activation process but is not part of the capsaicin activation pathway. Synergistic effect of heat and capsaicin on TRPV1 activation may originate from convergence of the two pathways on a common activation gate.

  16. Effect of Cytochalasin B, Lantrunculin B, Colchicine, Cycloheximid, Dimethyl Sulfoxide and Ion Channel Inhibitors on Biospeckle Activity in Apple Tissue.

    PubMed

    Kurenda, Andrzej; Pieczywek, Piotr M; Adamiak, Anna; Zdunek, Artur

    2013-01-01

    The biospeckle phenomenon is used for non-destructive monitoring the quality of fresh fruits and vegetables, but in the case of plant tissues there is a lack of experimentally confirmed information about the biological origin of the biospeckle activity (BA). As a main sources of BA, processes associated with the movement inside the cell, such as cytoplasmic streaming, organelle movement and intra- and extracellular transport mechanisms, are considered. The aim of this study is to investigate the effect of metabolism inhibitors, connected with intracellular movement such as cytochalasin B, lantrunculin B, colchicine, cycloheximid, dimethyl sulfoxide (DMSO) and mixture of ion channel inhibitors, injected into apples, on BA. Two methods of BA analysis based on cross-correlation coefficient and Laser Speckle Contrast Analysis (LASCA) were used. DMSO, lantrunculin B and mixture of ion channel inhibitors have a significant effect on BA, and approximately 74 % of BA of apple tissue is potentially caused by biological processes. Results indicate that the functioning of actin microfilaments and ion channels significantly affect BA.

  17. Effect of trimethyllead chloride on slowly activating (SV) channels in red beet (Beta vulgaris L.) taproots.

    PubMed

    Trela, Zenon; Burdach, Zbigniew; Przestalski, Stanisław; Karcz, Waldemar

    2012-12-01

    The patch-clamp technique was used to examine the effect of trimethyllead chloride (Met(3)PbCl) on SV channel activity in red beet (Beta vulgaris L.) taproot vacuoles. It was found that in the control bath the macroscopic currents showed the typical slow activation and a strong outward rectification of the steady-state currents. An addition of Met(3)PbCl to the bath solution blocked, in a concentration-dependent manner, SV currents in red beet vacuoles. The time constant τ increased several times in the presence of 100 μM trimethyllead chloride at all voltages tested. When single channel properties were analyzed, only little channel activity could be recorded in the presence of 100 μM Met(3)PbCl. Trimethyllead chloride decreased significantly (by about one order of magnitude) the open probability of single channels. The recordings of single channel activity obtained in the presence and absence of Met(3)PbCl showed that organolead only slightly (by ca. 10%) decreased the unitary conductance of single channels. It was also found that Met(3)PbCl diminished significantly the number of SV channel openings, whereas it did not change the opening times of the channels. Taken together, these results suggest that Met(3)PbCl binding site is located outside the channel selectivity filter.

  18. Effect of trimethyllead chloride on slowly activating (SV) channels in red beet (Beta vulgaris L.) taproots.

    PubMed

    Trela, Zenon; Burdach, Zbigniew; Przestalski, Stanisław; Karcz, Waldemar

    2012-12-01

    The patch-clamp technique was used to examine the effect of trimethyllead chloride (Met(3)PbCl) on SV channel activity in red beet (Beta vulgaris L.) taproot vacuoles. It was found that in the control bath the macroscopic currents showed the typical slow activation and a strong outward rectification of the steady-state currents. An addition of Met(3)PbCl to the bath solution blocked, in a concentration-dependent manner, SV currents in red beet vacuoles. The time constant τ increased several times in the presence of 100 μM trimethyllead chloride at all voltages tested. When single channel properties were analyzed, only little channel activity could be recorded in the presence of 100 μM Met(3)PbCl. Trimethyllead chloride decreased significantly (by about one order of magnitude) the open probability of single channels. The recordings of single channel activity obtained in the presence and absence of Met(3)PbCl showed that organolead only slightly (by ca. 10%) decreased the unitary conductance of single channels. It was also found that Met(3)PbCl diminished significantly the number of SV channel openings, whereas it did not change the opening times of the channels. Taken together, these results suggest that Met(3)PbCl binding site is located outside the channel selectivity filter. PMID:23312295

  19. Temperature and substrate chemistry as major drivers of interregional variability of leaf microbial decomposition and cellulolytic activity in headwater streams.

    PubMed

    Fenoy, Encarnación; Casas, J Jesús; Díaz-López, Manuel; Rubio, Juan; Guil-Guerrero, J Luís; Moyano-López, Francisco J

    2016-11-01

    Abiotic factors, substrate chemistry and decomposers community composition are primary drivers of leaf litter decomposition. In soil, much of the variation in litter decomposition is explained by climate and substrate chemistry, but with a significant contribution of the specialisation of decomposer communities to degrade specific substrates (home-field advantage, HFA). In streams, however, HFA effects on litter decomposition have not been explicitly tested. We evaluated responses of microbial decomposition and β-glucosidase activity to abiotic factors, substrate and decomposer assemblages, using a reciprocal litter transplant experiment: 'ecosystem type' (mountain vs lowland streams) × 'litter chemistry' (alder vs reed). Temperature, pH and ionic concentration were higher in lowland streams. Decomposition for both species was faster in lowland streams. Decomposition of reed was more accelerated in lowland compared with mountain streams than that of alder, suggesting higher temperature sensitivity of decomposition in reed. Q10 (5°C-15°C) values of β-glucosidase activity were over 2. The alkaline pH and high ionic concentration of lowland streams depleted enzyme activity. We found similar relationships of decomposition or enzyme activity with abiotic factors for both species, suggesting limited support to the HFA hypothesis. Overall, our results suggest a prime role of temperature interacting with substrate chemistry on litter decomposition. PMID:27515735

  20. Temperature and substrate chemistry as major drivers of interregional variability of leaf microbial decomposition and cellulolytic activity in headwater streams.

    PubMed

    Fenoy, Encarnación; Casas, J Jesús; Díaz-López, Manuel; Rubio, Juan; Guil-Guerrero, J Luís; Moyano-López, Francisco J

    2016-11-01

    Abiotic factors, substrate chemistry and decomposers community composition are primary drivers of leaf litter decomposition. In soil, much of the variation in litter decomposition is explained by climate and substrate chemistry, but with a significant contribution of the specialisation of decomposer communities to degrade specific substrates (home-field advantage, HFA). In streams, however, HFA effects on litter decomposition have not been explicitly tested. We evaluated responses of microbial decomposition and β-glucosidase activity to abiotic factors, substrate and decomposer assemblages, using a reciprocal litter transplant experiment: 'ecosystem type' (mountain vs lowland streams) × 'litter chemistry' (alder vs reed). Temperature, pH and ionic concentration were higher in lowland streams. Decomposition for both species was faster in lowland streams. Decomposition of reed was more accelerated in lowland compared with mountain streams than that of alder, suggesting higher temperature sensitivity of decomposition in reed. Q10 (5°C-15°C) values of β-glucosidase activity were over 2. The alkaline pH and high ionic concentration of lowland streams depleted enzyme activity. We found similar relationships of decomposition or enzyme activity with abiotic factors for both species, suggesting limited support to the HFA hypothesis. Overall, our results suggest a prime role of temperature interacting with substrate chemistry on litter decomposition.

  1. γ-Band deficiency and abnormal thalamocortical activity in P/Q-type channel mutant mice

    PubMed Central

    Llinás, Rodolfo R.; Choi, Soonwook; Urbano, Francisco J.; Shin, Hee-Sup

    2007-01-01

    Thalamocortical in vivo and in vitro function was studied in mice lacking P/Q-type calcium channels (CaV2.1), in which N-type calcium channels (CaV2.2) supported central synaptic transmission. Unexpectedly, in vitro patch recordings from thalamic neurons demonstrated no γ-band subthreshold oscillation, and voltage-sensitive dye imaging demonstrated an absence of cortical γ-band-dependent columnar activation involving cortical inhibitory interneuron activity. In vivo electroencephalogram recordings showed persistent absence status and a dramatic reduction of γ-band activity. Pharmacological block of T-type calcium channels (CaV3), although not noticeably affecting normal control animals, left the knockout mice in a coma-like state. Hence, although N-type calcium channels can rescue P/Q-dependent synaptic transmission, P/Q calcium channels are essential in the generation of γ-band activity and resultant cognitive function. PMID:17968008

  2. Mechanosensitive channel activation by diffusio-osmotic force.

    PubMed

    Bonthuis, Douwe Jan; Golestanian, Ramin

    2014-10-01

    For ion channel gating, the appearance of two distinct conformational states and the discrete transitions between them are essential, and therefore of crucial importance to all living organisms. We show that the physical interplay between two structural elements that are commonly present in bacterial mechanosensitive channels--namely, a charged vestibule and a hydrophobic constriction--creates two distinct conformational states, open and closed, as well as the gating between them. We solve the nonequilibrium Stokes-Poisson-Nernst-Planck equations, extended to include a molecular potential of mean force, and show that a first order transition between the closed and open states arises naturally from the diffusio-osmotic stress caused by the ions and the water inside the channel and the elastic restoring force from the membrane. PMID:25325663

  3. Lifetime and conductance of acetylcholine-activated channels in normal and denervated toad sartorius muscle.

    PubMed Central

    Gage, P W; Hamill, O P

    1980-01-01

    1. The average lifetime and conductance of acetylcholine-activated channels were measured in normal and denervated, voltage-clamped toad sartorius muscle fibres at 10 degrees C. 2. The null potential was -4 +/- 1 mV for subsynaptic channels in normal fibres and -6 +/- 3 mV for extrasynaptic channels in denervated fibres. 3. There was a linear relationship between variance of conductance fluctuations and mean conductance for acetylcholine-induced currents up to 50 nA, in denervated fibres clamped at -50 mV. The ratio gave a channel conductance of 14 pS. 4. At the same membrane potential, the average lifetime of extrasynaptic channels in denervated fibres was approximately double, whereas channel conductance was approximately half, that of subsynaptic channels in normal fibres: there was little difference in net charge transfer through the two types of channel under similar conditions. 5. Single channel conductance increased, whereas average channel lifetime decreased, as the membrane potential became more positive (depolarized). The effect of potential on channel lifetime and conductance was more pronounced in denervated than in normal fibres. PMID:6767026

  4. Parsing the phonological loop: activation timing in the dorsal speech stream determines accuracy in speech reproduction.

    PubMed

    Herman, Alexander B; Houde, John F; Vinogradov, Sophia; Nagarajan, Srikantan S

    2013-03-27

    Despite significant research and important clinical correlates, direct neural evidence for a phonological loop linking speech perception, short-term memory and production remains elusive. To investigate these processes, we acquired whole-head magnetoencephalographic (MEG) recordings from human subjects performing a variable-length syllable sequence reproduction task. The MEG sensor data were source localized using a time-frequency optimized spatially adaptive filter, and we examined the time courses of cortical oscillatory power and the correlations of oscillatory power with behavior between onset of the audio stimulus and the overt speech response. We found dissociations between time courses of behaviorally relevant activations in a network of regions falling primarily within the dorsal speech stream. In particular, verbal working memory load modulated high gamma power in both Sylvian-parietal-temporal and Broca's areas. The time courses of the correlations between high gamma power and subject performance clearly alternated between these two regions throughout the task. Our results provide the first evidence of a reverberating input-output buffer system in the dorsal stream underlying speech sensorimotor integration, consistent with recent phonological loop, competitive queuing, and speech-motor control models. These findings also shed new light on potential sources of speech dysfunction in aphasia and neuropsychiatric disorders, identifying anatomically and behaviorally dissociable activation time windows critical for successful speech reproduction. PMID:23536060

  5. Ferroelectric active models of ion channels in biomembranes.

    PubMed

    Bystrov, V S; Lakhno, V D; Molchanov, M

    1994-06-21

    Ferroactive models of ion channels in the theory of biological membranes are presented. The main equations are derived and their possible solutions are shown. The estimates of some experimentally measured parameters are given. Possible physical consequences of the suggested models are listed and the possibility of their experimental finding is discussed. The functioning of the biomembrane's ion channel is qualitatively described on the basis of the suggested ferroactive models. The main directions and prospects for development of the ferroactive approach to the theory of biological membranes and their structures are indicated.

  6. Effects of Land-Cover Change, Floods, and Stream Position on Geomorphic Processes - Implications for Restoration Activities

    USGS Publications Warehouse

    Fitzpatrick, F.A.; ,

    2001-01-01

    A geomorphic study for North Fish Creek, a northern Wisconsin tributary to Lake Superior was analyzed to determine the hydrologic and geomorphic changes caused by clear-cut logging and agricultural activity. Discharge magnitude estimated with HEC-2 for full-channel capacities indicate that modern full-channel discharges are about twice as large as pre-1946 full-channel discharges. Flood-plain deposition rates were high along the transitional main stem after European settlement. Restoration and protection activities would be most effective if focused on watershed practices to reduce runoff and on channel restoration that reduce buff and bank erosion in the upper and transitional main stems.

  7. Tremorgenic indole alkaloids potently inhibit smooth muscle high-conductance calcium-activated potassium channels.

    PubMed

    Knaus, H G; McManus, O B; Lee, S H; Schmalhofer, W A; Garcia-Calvo, M; Helms, L M; Sanchez, M; Giangiacomo, K; Reuben, J P; Smith, A B

    1994-05-17

    Tremorgenic indole alkaloids produce neurological disorders (e.g., staggers syndromes) in ruminants. The mode of action of these fungal mycotoxins is not understood but may be related to their known effects on neurotransmitter release. To determine whether these effects could be due to inhibition of K+ channels, the interaction of various indole diterpenes with high-conductance Ca(2+)-activated K+ (maxi-K) channels was examined. Paspalitrem A, paspalitrem C, aflatrem, penitrem A, and paspalinine inhibit binding of [125I]charybdotoxin (ChTX) to maxi-K channels in bovine aortic smooth muscle sarcolemmal membranes. In contrast, three structurally related compounds, paxilline, verruculogen, and paspalicine, enhanced toxin binding. As predicted from the binding studies, covalent incorporation of [125I]ChTX into the 31-kDa subunit of the maxi-K channel was blocked by compounds that inhibit [125I]ChTX binding and enhanced by compounds that stimulate [125I]ChTX binding. Modulation of [125I]ChTX binding was due to allosteric mechanisms. Despite their different effects on binding of [125I]ChTX to maxi-K channels, all compounds potently inhibited maxi-K channels in electrophysiological experiments. Other types of voltage-dependent or Ca(2+)-activated K+ channels examined were not affected. Chemical modifications of paxilline indicate a defined structure-activity relationship for channel inhibition. Paspalicine, a deshydroxy analog of paspalinine lacking tremorgenic activity, also potently blocked maxi-K channels. Taken together, these data suggest that indole diterpenes are the most potent nonpeptidyl inhibitors of maxi-K channels identified to date. Some of their pharmacological properties could be explained by inhibition of maxi-K channels, although tremorgenicity may be unrelated to channel block. PMID:7514038

  8. Voltage, calcium, and stretch activated ionic channels and intracellular calcium in bone cells.

    PubMed

    Ypey, D L; Weidema, A F; Höld, K M; Van der Laarse, A; Ravesloot, J H; Van Der Plas, A; Nijweide, P J

    1992-12-01

    Embryonic chick bone cells express various types of ionic channels in their plasma membranes for as yet unresolved functions. Chick osteoclasts (OCL) have the richest spectrum of channel types. Specific for OCL is a K+ channel, which activates (opens) when the inside negative membrane potential (Vm) becomes more negative (hyperpolarization). This is consistent with findings of others on rat OCL. The membrane conductance constituted by these channels is called the inward rectifying K+ conductance (GKi), or inward rectifier, because the hyperpolarization-activated channels cause cell-inward K+ current to pass more easily through the membrane than outward K+ current. Besides GKi channels, OCL may express two other types of voltage-activated K+ channels. One constitutes the transient outward rectifying K+ conductance (GKto), which is activated upon making the membrane potential less negative (depolarization) but has a transient nature. This conductance favors transient K+ conduction in the cell-outward direction. The GKto also occurs in a small percentage of cells in osteoblast (OBL) and periosteal fibroblast (PFB) cultures. The other OCL K+ conductance, the GKCa, is activated by both membrane depolarization and a rise in [Ca2+]i. GKCa channels are also present in the other chick bone cell types, that is, OBL, osteocytes (OCY), and PFB. Furthermore, in excised patches of all bone cell types, channels have been found that conduct anions, including Cl- and phosphate ions. These channels are only active around Vm = 0 mV. While searching for a membrane mechanism for adaptation of bone to mechanical loading, we found stretch-activated channels in chick osteoclasts; other investigators have found stretch-activated cation channels (K+ or aselective) in rat and human osteogenic cell lines. In contrast to other studies on cell lines or OBL from other species, we have not found any of the classic macroscopic voltage-activated calcium conductances (GCa) in any of the chick bone

  9. Spatial analysis of Budovar stream catchment (Srem Loess Plateau, Serbia) in a tectonically active region

    NASA Astrophysics Data System (ADS)

    Jovanovic, Mladjen; Rvovic, Ivan; Sorak, Rada; Petrovic, Milos

    2016-04-01

    Budovar is the far longest stream on Srem Loess Plateau, with a length of a 52 km, and catchment area of 245 km2. Budovar stream drains a quite complex landscape in terms of generally flat loess plateau, with elevations decreasing gradually southeastward - from 213 m at slopes of Fru\\vska Gora Mountain to 70,9 m at the confluence with Danube river. The youngest (Pleistocene/Holocene) sedimentary formations in the catchment vary from slope loess on Fru\\vska Gora Mtn. in upper part, through typical plateau loess in middle part, and the finest bog-sediments in tectonic depressions in lower part. These deposits lie over the bog-lake-terrestrial sediments with thickness over 100 m. According the geodetic measurements, uplift of Fru\\vska Gora Mtn., which has been the strongest during the Middle Pleistocene, is still present, with rates of up to 1 mm/y in contrast of general uplift of the area, subsidence is recorded in two distinct parts of the catchment. Spatial analysis is done using a DEM, generated in ArcGIS 10.0 from the elevation points, 10 m contours and stream coverage available in 1:25.000 topographical maps. Both longitudinal and cross-section profiles of the valley reflect the influence of tectonic distortions and climatic fluctuations. Valleys in Budovar catchment have composite character - the valleys cross-sections vary from deep incised V-shape, reversed trapezoid shape and completely flat valleys in tectonic depressions. Moreover, there is almost no correlation between the shape of cross-sectional profiles and the direction of curvature of the main valley's long axis (left/right or straight), suggesting that the tectonic activity has the key role in shaping. The width of valleys in Budovar catchment area is in sharp contrast with present stream discharge, which suggests strong climate fluctuations since Upper Pleistocene. The longitudinal profiles also shows signs of kickpoints and some short reaches with increasing elevation in the flow direction. Key

  10. The AQP-3 water channel is a pivotal modulator of glycerol-induced chloride channel activation in nasopharyngeal carcinoma cells.

    PubMed

    Zhang, Haifeng; Deng, Zhiqin; Yang, Lili; Luo, Hai; Liu, Shanwen; Li, Yuan; Wei, Yan; Peng, Shuang; Zhu, Linyan; Wang, Liwei; Chen, Lixin

    2016-03-01

    Aquaporin (AQP) and chloride channels are ubiquitous in virtually all living cells, playing pivotal roles in cell proliferation, migration and apoptosis. We previously reported that AQP-3 aquaglyceroporin and ClC-3 chloride channels could form complexes to regulate cell volume in nasopharyngeal carcinoma cells. In this study, the roles of AQP-3 in their hetero-complexes were further investigated. Glycerol entered the cells via AQP-3 and induced two different Cl(-) currents through cell swelling-dependent or -independent pathways. The swelling-dependent Cl(-) current was significantly inhibited by pretreatment with CuCl2 and AQP-3-siRNA. After siRNA-induced AQP-3 knock-down, the 140 mM glycerol isoosmotic solution swelled cells by 22% (45% in AQP-3-intact cells) and induced a smaller Cl(-) current; this current was smaller than that activated by 8% cell volume swelling, which induced by the 140 mM glycerol hyperosmotic solution in AQP-3-intact cells. This suggests that the interaction between AQP-3 and ClC-3 plays an important role in cell volume regulation and that AQP-3 may be a modulator that opens volume-regulated chloride channels. The swelling-independent Cl(-) current, which was activated by extracellular glycerol, was reduced by CuCl2 and AQP-3-siRNA pretreatment. Dialyzing glycerol into cells via the pipette directly induced the swelling-independent Cl(-) current; however this current was blocked by AQP-3 down-regulation, suggesting AQP-3 is essential for the opening of chloride channels. In conclusion, AQP-3 is the pathway for water, glycerol and other small solutes to enter cells, and it may be an essential modulator for the gating of chloride channels. PMID:26794461

  11. Thermodynamic view of activation energies of proton transfer in various gramicidin A channels.

    PubMed

    Chernyshev, Anatoly; Cukierman, Samuel

    2002-01-01

    The temperature dependencies (range: 5-45 degrees C) of single-channel proton conductances (g(H)) in native gramicidin A (gA) and in two diastereoisomers (SS and RR) of the dioxolane-linked gA channels were measured in glycerylmonooleate/decane (GMO) and diphytanoylphosphatidylcholine/decane (DiPhPC) bilayers. Linear Arrhenius plots (ln (g(H)) versus K(-1)) were obtained for the native gA and RR channels in both types of bilayers, and for the SS channel in GMO bilayers only. The Arrhenius plot for proton transfer in the SS channel in DiPhPC bilayers had a break in linearity around 20 degrees C. This break seems to occur only when protons are the permeating cations in the SS channel. The activation energies (E(a)) for proton transfer in various gA channels (approximately 15 kJ/mol) are consistent with the rate-limiting step being in the channel and/or at the membrane-channel/solution interface, and not in bulk solution. E(a) values for proton transfer in gA channels are considerably smaller than for the permeation of nonproton currents in gA as well as in various other ion channels. The E(a) values for proton transfer in native gA channels are nearly the same in both GMO and DiPhPC bilayers. In contrast, for the dioxolane linked gA dimers, E(a) values were strongly modulated by the lipid environment. The Gibbs activation free energies (Delta G(#)(o)) for protons in various gA channels are within the range of 27-29 kJ/mol in GMO bilayers and of 20-22 kJ/mol in DiPhPC bilayers. The largest difference between Delta G(#)(o) for proton currents occurs between native gA (or SS channels) and the RR channel. In general, the activation entropy (Delta S) is mostly responsible for the differences between g(H) values in various gA channels, and also in distinct bilayers. However, significant differences between the activation enthalpies (Delta H(#)(o)) for proton transfer in the SS and RR channels occur in distinct membranes.

  12. Cyclic GMP-activated channels of salamander retinal rods: spatial distribution and variation of responsiveness.

    PubMed Central

    Karpen, J W; Loney, D A; Baylor, D A

    1992-01-01

    1. Patch-clamp methods were used to investigate the areal density and spatial location of cyclic GMP-activated channels in the surface membrane of salamander rod outer segments. 2. The density of active channels (i.e. channels able to respond to cyclic GMP) in patches excised from outer segments was determined from the number of active channels, N, and the membrane area, A. N was estimated from the current induced by a saturating concentration of cyclic GMP, while A was estimated from the electrical capacitance of the patch. 3. In patches excised from forty-one isolated outer segments prepared in the light the active channel density varied over a remarkable range: 0.34-629 microns-2, with a mean of 166 microns-2. Density was not correlated with patch area in this or any of the conditions studied. 4. The spatial distribution of open channels on the outer segment of a transducing rod was measured by recording the local dark current at various positions with a loose-patch electrode. The apparent density of open channels varied by only about +/- 50% around the circumference of the outer segment and up and down its length. This indicates that the wide range of densities in excised patches did not result from sampling a non-uniform spatial distribution of channels. 5. Patches excised from sixteen dark-adapted whole cells with healthy appearances and saturating light responses of normal size had active channel densities of 1.1-200 microns-2, with a mean of 60 microns-2. Patches from twenty light-adapted whole cells had similar densities. Many densities from the whole cells were much lower than expected. This, and the wide variation in densities, suggests that obtaining a patch often lowered the density of active channels. The number of channels in a patch was quite stable from 1 s to 30 min after excision, ruling out progressive denaturation or adsorption of channels to the glass as a cause for this effect. 6. The mean active channel density in patches excised from whole

  13. Relationship Between Watershed Land Use and Denitrification Enzyme Activity in Headwater Streams

    EPA Science Inventory

    Headwater streams are the dominant land-water interface across much of the landscape. Denitrification is an important ecological service provided by headwater streams. Anthropogenic inputs of N to terrestrial ecosystems largely result from agricultural practices. Animal agricultu...

  14. Urban Stream Ecology

    EPA Science Inventory

    Urban watersheds characteristically have high impervious surface cover, resulting in high surface runoff and low infiltration following storms. In response, urban streams experience “flashy” stormflows, reduced baseflows, bank erosion, channel widening, and sedimentation. Urban ...

  15. Macroinvertebrate response to stream restoration by large wood addition

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Channel incision processes resulting primarily from channel straightening/dredging and watershed deforestation have been among the most profound degradations in our streams. Physical changes to streams affected by channel incision processes have included significant increases in streambed degradatio...

  16. HOW MUCH OF STREAM HABITAT IS PREDETERMINED BY NATURAL GEOMORPHIC CONTROLS?

    EPA Science Inventory

    Detailed pre- and post-disturbance research has demonstrated the ability of human activities to alter stream channel characteristics, including the amounts of deep pool habitat and fine substrate. However, it is often difficult to demonstrate consistent associations between the...

  17. Molecular bases for the asynchronous activation of sodium and potassium channels required for nerve impulse generation.

    PubMed

    Lacroix, Jérôme J; Campos, Fabiana V; Frezza, Ludivine; Bezanilla, Francisco

    2013-08-21

    Most action potentials are produced by the sequential activation of voltage-gated sodium (Nav) and potassium (Kv) channels. This is mainly achieved by the rapid conformational rearrangement of voltage-sensor (VS) modules in Nav channels, with activation kinetics up to 6-fold faster than Shaker-type Kv channels. Here, using mutagenesis and gating current measurements, we show that a 3-fold acceleration of the VS kinetics in Nav versus Shaker Kv channels is produced by the hydrophilicity of two "speed-control" residues located in the S2 and S4 segments in Nav domains I-III. An additional 2-fold acceleration of the Nav VS kinetics is provided by the coexpression of the β1 subunit, ubiquitously found in mammal tissues. This study uncovers the molecular bases responsible for the differential activation of Nav versus Kv channels, a fundamental prerequisite for the genesis of action potentials.

  18. Effects of hatchery fish density on emigration, growth, survival, and predation risk of natural steelhead parr in an experimental stream channel

    USGS Publications Warehouse

    Tatara, Christopher P.; Riley, Stephen C.; Berejikian, Barry A.

    2011-01-01

    Hatchery supplementation of steelhead Oncorhynchus mykiss raises concerns about the impacts on natural populations, including reduced growth and survival, displacement, and increased predation. The potential risks may be density dependent.We examined how hatchery stocking density and the opportunity to emigrate affect the responses of natural steelhead parr in an experimental stream channel and after 15 d found no density-dependent effects on growth, emigration, or survival at densities ranging from 1-6 hatchery parr/m2. The opportunity for steelhead parr to emigrate reduced predation by coastal cutthroat trout O. clarkii clarkii on both hatchery and natural steelhead parr. The cutthroat trout exhibited a type-I functional response (constant predation rate with increased prey density) for the hatchery and composite populations. In contrast, the predation rate on natural parr decreased as hatchery stocking density increased. Supplementation with hatchery parr at any experimental stocking density reduced the final natural parr density. This decline was explained by increased emigration fromthe supplemented groups. Natural parr had higher mean instantaneous growth rates than hatchery parr. The proportion of parr emigrating decreased as parr size increased over successive experimental trials. Smaller parr had lower survival and suffered higher predation. The final density of the composite population, a measure of supplementation effectiveness, increased with the hatchery steelhead stocking rate. Our results indicate that stocking larger hatchery parr (over 50 d postemergence) at densities within the carrying capacity would have low short-term impact on the growth, survival, and emigration of natural parr while increasing the density of the composite population; in addition, a stocking density greater than 3 fish/m2 might be a good starting point for the evaluation of parr stocking in natural streams.

  19. Experimental Tests of Priority Effects and Light Availability on Relative Performance of Myriophyllum spicatum and Elodea nuttallii Propagules in Artificial Stream Channels

    PubMed Central

    Zefferman, Emily P.

    2015-01-01

    Submersed macrophytes have important ecological functions in many streams, but fostering growth of beneficial native species while suppressing weedy invasives may be challenging. Two approaches commonly used in management of terrestrial plant communities may be useful in this context: (1) altering resource availability and (2) establishing desirable species before weeds can invade (priority effects). However, these approaches are rarely used in aquatic systems, despite widespread need for sustainable solutions to aquatic weed problems. In artificial stream channels in California, USA, I conducted experiments with asexual propagules of non-native invasive Myriophyllum spicatum (Eurasian watermilfoil) and native Elodea nuttallii (western waterweed) to address the questions: (1) How does light availability affect relative performance of the two species?; (2) Does planting the native earlier than the invasive decrease survival or growth rate of the invasive?; and (3) Do light level and priority effects interact? The relative performance between E. nuttallii and M. spicatum had an interesting and unexpected pattern: M. spicatum had higher growth rates than E. nuttallii in the zero and medium shade levels, but had similar performance in the low and high shade levels. This pattern is most likely the result of E. nutallii’s sensitivity to both very low and very high light, and M. spicatum’s sensitivity to very low light only. Native priority did not significantly affect growth rate or survival of M. spicatum, possibly because of unexpectedly poor growth of the E. nuttallii planted early. This study suggests that altering light levels could be effective in reducing growth of an invasive macrophyte, and for changing the competitive balance between a native and a non-native species in the establishment phase. Further investigations into the use of priority effects and resource alteration for submersed macrophyte management are warranted, given their mixed results in other

  20. Experimental tests of priority effects and light availability on relative performance of Myriophyllum spicatum and Elodea nuttallii propagules in artificial stream channels.

    PubMed

    Zefferman, Emily P

    2015-01-01

    Submersed macrophytes have important ecological functions in many streams, but fostering growth of beneficial native species while suppressing weedy invasives may be challenging. Two approaches commonly used in management of terrestrial plant communities may be useful in this context: (1) altering resource availability and (2) establishing desirable species before weeds can invade (priority effects). However, these approaches are rarely used in aquatic systems, despite widespread need for sustainable solutions to aquatic weed problems. In artificial stream channels in California, USA, I conducted experiments with asexual propagules of non-native invasive Myriophyllum spicatum (Eurasian watermilfoil) and native Elodea nuttallii (western waterweed) to address the questions: (1) How does light availability affect relative performance of the two species?; (2) Does planting the native earlier than the invasive decrease survival or growth rate of the invasive?; and (3) Do light level and priority effects interact? The relative performance between E. nuttallii and M. spicatum had an interesting and unexpected pattern: M. spicatum had higher growth rates than E. nuttallii in the zero and medium shade levels, but had similar performance in the low and high shade levels. This pattern is most likely the result of E. nutallii's sensitivity to both very low and very high light, and M. spicatum's sensitivity to very low light only. Native priority did not significantly affect growth rate or survival of M. spicatum, possibly because of unexpectedly poor growth of the E. nuttallii planted early. This study suggests that altering light levels could be effective in reducing growth of an invasive macrophyte, and for changing the competitive balance between a native and a non-native species in the establishment phase. Further investigations into the use of priority effects and resource alteration for submersed macrophyte management are warranted, given their mixed results in other

  1. Calmodulin-dependent activation and inactivation of anoctamin calcium-gated chloride channels.

    PubMed

    Vocke, Kerstin; Dauner, Kristin; Hahn, Anne; Ulbrich, Anne; Broecker, Jana; Keller, Sandro; Frings, Stephan; Möhrlen, Frank

    2013-10-01

    Calcium-dependent chloride channels serve critical functions in diverse biological systems. Driven by cellular calcium signals, the channels codetermine excitatory processes and promote solute transport. The anoctamin (ANO) family of membrane proteins encodes three calcium-activated chloride channels, named ANO 1 (also TMEM16A), ANO 2 (also TMEM16B), and ANO 6 (also TMEM16F). Here we examined how ANO 1 and ANO 2 interact with Ca(2+)/calmodulin using nonstationary current analysis during channel activation. We identified a putative calmodulin-binding domain in the N-terminal region of the channel proteins that is involved in channel activation. Binding studies with peptides indicated that this domain, a regulatory calmodulin-binding motif (RCBM), provides two distinct modes of interaction with Ca(2+)/calmodulin, one at submicromolar Ca(2+) concentrations and one in the micromolar Ca(2+) range. Functional, structural, and pharmacological data support the concept that calmodulin serves as a calcium sensor that is stably associated with the RCBM domain and regulates the activation of ANO 1 and ANO 2 channels. Moreover, the predominant splice variant of ANO 2 in the brain exhibits Ca(2+)/calmodulin-dependent inactivation, a loss of channel activity within 30 s. This property may curtail ANO 2 activity during persistent Ca(2+) signals in neurons. Mutagenesis data indicated that the RCBM domain is also involved in ANO 2 inactivation, and that inactivation is suppressed in the retinal ANO 2 splice variant. These results advance the understanding of Ca(2+) regulation in anoctamin Cl(-) channels and its significance for the physiological function that anoctamin channels subserve in neurons and other cell types.

  2. Fe(2+) substrate transport through ferritin protein cage ion channels influences enzyme activity and biomineralization.

    PubMed

    Behera, Rabindra K; Torres, Rodrigo; Tosha, Takehiko; Bradley, Justin M; Goulding, Celia W; Theil, Elizabeth C

    2015-09-01

    Ferritins, complex protein nanocages, form internal iron-oxy minerals (Fe2O3·H2O), by moving cytoplasmic Fe(2+) through intracage ion channels to cage-embedded enzyme (2Fe(2+)/O2 oxidoreductase) sites where ferritin biomineralization is initiated. The products of ferritin enzyme activity are diferric oxy complexes that are mineral precursors. Conserved, carboxylate amino acid side chains of D127 from each of three cage subunits project into ferritin ion channels near the interior ion channel exits and, thus, could direct Fe(2+) movement to the internal enzyme sites. Ferritin D127E was designed and analyzed to probe properties of ion channel size and carboxylate crowding near the internal ion channel opening. Glu side chains are chemically equivalent to, but longer by one -CH2 than Asp, side chains. Ferritin D127E assembled into normal protein cages, but diferric peroxo formation (enzyme activity) was not observed, when measured at 650 nm (DFP λ max). The caged biomineral formation, measured at 350 nm in the middle of the broad, nonspecific Fe(3+)-O absorption band, was slower. Structural differences (protein X-ray crystallography), between ion channels in wild type and ferritin D127E, which correlate with the inhibition of ferritin D127E enzyme activity include: (1) narrower interior ion channel openings/pores; (2) increased numbers of ion channel protein-metal binding sites, and (3) a change in ion channel electrostatics due to carboxylate crowding. The contributions of ion channel size and structure to ferritin activity reflect metal ion transport in ion channels are precisely regulated both in ferritin protein nanocages and membranes of living cells.

  3. Calcium-activated potassium channels in the endothelium of intact rat aorta.

    PubMed Central

    Marchenko, S M; Sage, S O

    1996-01-01

    1. Single K+ channel currents and membrane potential were recorded in the endothelium of excised intact rat aorta. 2. Two types of K+ channel were found in excised patches, KCh and KAp. With Na+ and K+ as the main external and internal cations, outward conductances were 6.7 pS (KCh) and 2.8 pS (KAp). In symmetric 150 mM K+, the inward conductances were 18 and 9.1 pS. 3. Activation by Ca2+ was concentration dependent. KCh channels were activated by [Ca2+] > 0.1 microM and KAp by [Ca2+] > 0.5 microM. 4. Apamin at concentrations > 1 nM inhibited KAp Channels. Block was complete at 10 nM. KAp channels were insensitive to charybdotoxin. KCh channels were inhibited by charybdotoxin at concentrations > 50 nM, but were insensitive to apamin. 5. d-Tubocurarine (dTC) evoked flickering activity of KAp channels at concentrations > 5 microM and complete block at 100 microM. At these doses, dTC did not affect KCh channels, but at concentrations > 1 mM it decreased the single channel amplitude. 6. Hyperpolarization evoked by acetylcholine was unaffected by apamin or dTC at low concentrations ( < or = 100 microM), but inhibited by high concentrations of charybdotoxin ( > 50 nM) or dTC ( > 1 mM). 7. These data suggest that KCh channels are novel Ca(2+)-activated K+ channels responsible for the ACh-evoked hyperpolarization in the endothelium of rat aorta. PMID:8730582

  4. Fe2+ Substrate Transport through Ferritin Protein Cage Ion Channels Influences Enzyme Activity and Biomineralization

    PubMed Central

    Behera, Rabindra K.; Torres, Rodrigo; Tosha, Takehiko; Bradley, Justin M.; Goulding, Celia W.; Theil, Elizabeth C.

    2015-01-01

    Ferritins, complex protein nanocages, form internal iron-oxy minerals (Fe2O3.H2O), by moving cytoplasmic Fe2+ through intracage ion channels to cage-embedded enzyme (2Fe2+/O2 oxidoreductase) sites where ferritin biomineralization is initiated. The products of ferritin enzyme activity are diferric oxy complexes that are mineral precursors. Conserved, carboxylate amino acid side chains of D127 from each of three cage subunits project into ferritin ion channels near the interior ion channel exits and, thus, could direct Fe2+ movement to the internal enzyme sites. Ferritin D127E was designed and analyzed to probe properties of ion channel size and carboxylate crowding near the internal ion channel opening. Glu side chains are chemically equivalent to, but longer by one – CH2 than Asp, side chains. Ferritin D127E assembled into normal protein cages, but diferric peroxo formation (enzyme activity) was not observed, when measured at 650nm (DFP λmax). The caged biomineral formation, measured at 350 nm in the middle of the broad, nonspecific Fe3+-O absorption band, was slower. Structural differences (protein X-ray crystallography), between ion channels in wild type and ferritin D127E, which correlate with the inhibition of ferritin D127E enzyme activity include: 1. narrower interior ion channel openings/pores, 2. increased numbers of ion channel protein-metal binding sites, and 3. a change in ion channel electrostatics due to carboxylate crowding. The contributions of ion channel size and structure to ferritin activity reflect metal ion transport in ion channels are precisely regulated both in ferritin protein nanocages and membranes of living cells. PMID:26202907

  5. Small-conductance Ca2+ -activated K+ channels and cardiac arrhythmias.

    PubMed

    Zhang, Xiao-Dong; Lieu, Deborah K; Chiamvimonvat, Nipavan

    2015-08-01

    Small-conductance Ca2+ -activated K+ (SK, KCa2) channels are unique in that they are gated solely by changes in intracellular Ca2+ and, hence, function to integrate intracellular Ca2+ and membrane potentials on a beat-to-beat basis. Recent studies have provided evidence for the existence and functional significance of SK channels in the heart. Indeed, our knowledge of cardiac SK channels has been greatly expanded over the past decade. Interests in cardiac SK channels are further driven by recent studies suggesting the critical roles of SK channels in human atrial fibrillation, the SK channel as a possible novel therapeutic target in atrial arrhythmias, and upregulation of SK channels in heart failure in animal models and in human heart failure. However, there remain critical gaps in our knowledge. Specifically, blockade of SK channels in cardiac arrhythmias has been shown to be both antiarrhythmic and proarrhythmic. This contemporary review provides an overview of the literature on the role of cardiac SK channels in cardiac arrhythmias and serves as a discussion platform for the current clinical perspectives. At the translational level, development of SK channel blockers as a new therapeutic strategy in the treatment of atrial fibrillation and the possible proarrhythmic effects merit further considerations and investigations.

  6. Ca2+-Activated K+ Channels in Gonadotropin-Releasing Hormone-Stimulated Mouse Gonadotrophs

    PubMed Central

    Waring, Dennis W.; Turgeon, Judith L.

    2009-01-01

    GnRH receptor activation elicits release of intracellular Ca2+, which leads to secretion and also activates Ca2+-activated ion channels underlying membrane voltage changes. The predominant Ca2+-activated ion channels in rat and mouse gonadotrophs are Ca2+-activated K+ channels. To establish the temporal relationship between GnRH-induced changes in intracellular [Ca2+] ([Ca2+]i) and membrane current (Im), and to identify specific Ca2+-activated K+ channels linking GnRH-induced increase in [Ca2+]i to changes in plasma membrane electrical activity, we used single female mouse gonadotrophs in the perforated patch configuration of the patch-clamp technique, which preserves signaling pathways. Simultaneous measurement of [Ca2+]i and Im in voltage-clamped gonadotrophs revealed that GnRH stimulates an increase in [Ca2+]i that precedes outward Im, and that activates two kinetically distinct currents identified, using specific toxin inhibitors, as small conductance Ca2+-activated K+ (SK) current (ISK) and large (big) conductance voltage- and Ca2+-activated K+ (BK) current (IBK). We show that the apamin-sensitive current has an IC50 of 69 pM, consistent with the SK2 channel subtype and confirmed by immunocytochemistry. The magnitude of the SK current response to GnRH was attenuated by 17β-estradiol (E2) pretreatment. Iberiotoxin, an inhibitor of BK channels, completely blocked the residual apamin-insensitive outward Im, substantiating that IBK is a component of the GnRH-induced outward Im. In contrast to its suppression of ISK, E2 pretreatment augmented peak IBK. SK or BK channel inhibition modulated GnRH-stimulated LH secretion, implicating a role for these channels in gonadotroph function. In summary, in mouse gonadotrophs the GnRH-stimulated increase in [Ca2+]i activates ISK and IBK, which are differentially regulated by E2 and which may be targets for E2 positive feedback in LH secretion. PMID:19106218

  7. Limitations and implications of stream classification

    USGS Publications Warehouse

    Juracek, K.E.; Fitzpatrick, F.A.

    2003-01-01

    Stream classifications that are based on channel form, such as the Rosgen Level II classification, are useful tools for the physical description and grouping of streams and for providing a means of communication for stream studies involving scientists and (or) managers with different backgrounds. The Level II classification also is used as a tool to assess stream stability, infer geomorphic processes, predict future geomorphic response, and guide stream restoration or rehabilitation activities. The use of the Level II classification for these additional purposes is evaluated in this paper. Several examples are described to illustrate the limitations and management implications of the Level II classification. Limitations include: (1) time dependence, (2) uncertain applicability across physical environments, (3) difficulty in identification of a true equilibrium condition, (4) potential for incorrect determination of bankfull elevation, and (5) uncertain process significance of classification criteria. Implications of using stream classifications based on channel form, such as Rosgen's, include: (1) acceptance of the limitations, (2) acceptance of the risk of classifying streams incorrectly, and (3) classification results may be used inappropriately. It is concluded that use of the Level II classification for purposes beyond description and communication is not appropriate. Research needs are identified that, if addressed, may help improve the usefulness of the Level II classification.

  8. Transient potassium channels augment degeneracy in hippocampal active dendritic spectral tuning

    PubMed Central

    Rathour, Rahul Kumar; Malik, Ruchi; Narayanan, Rishikesh

    2016-01-01

    Hippocampal pyramidal neurons express an intraneuronal map of spectral tuning mediated by hyperpolarization-activated cyclic-nucleotide-gated nonspecific-cation channels. Modeling studies have predicted a critical regulatory role for A-type potassium (KA) channels towards augmenting functional robustness of this map. To test this, we performed patch-clamp recordings from soma and dendrites of rat hippocampal pyramidal neurons, and measured spectral tuning before and after blocking KA channels using two structurally distinct pharmacological agents. Consistent with computational predictions, we found that blocking KA channels resulted in a significant reduction in resonance frequency and significant increases in input resistance, impedance amplitude and action-potential firing frequency across the somato-apical trunk. Furthermore, across all measured locations, blocking KA channels enhanced temporal summation of postsynaptic potentials and critically altered the impedance phase profile, resulting in a significant reduction in total inductive phase. Finally, pair-wise correlations between intraneuronal percentage changes (after blocking KA channels) in different measurements were mostly weak, suggesting differential regulation of different physiological properties by KA channels. Our results unveil a pivotal role for fast transient channels in regulating theta-frequency spectral tuning and intrinsic phase response, and suggest that degeneracy with reference to several coexisting functional maps is mediated by cross-channel interactions across the active dendritic arbor. PMID:27094086

  9. pH regulation of amphotericin B channels activity in the bilayer lipid membrane

    PubMed Central

    Shahmoradi, Tahereh; Sepehry, Hamid; Ashrafpour, Manuchehr

    2016-01-01

    Background: Amphotericin B (AmB) is a polyene antibiotic frequently applied in the treatment of systemic fungal infections in spite of its secondary effects. The pH plays a crucial role in modulating biophysical features of ion channels in the bilayer lipid membranes. Aim: In this study, the role of pH in the regulation of AmB channel was assessed by single channel recording of ion channel incorporated in the artificial membrane. Materials and Methods: Bilayer lipid membrane was formed by phosphatidylcholine in a 350 μm diameter aperture between two chambers, cis and trans contained 200/50 mMKCl solutions, respectively; then AmB was incorporated into the bilayer lipid membrane. Single channel recordings were used to indicate the effects of pH changes on AmB channels activity. The records were analyzed by Clamp fit 10 software. Results: A kinetic analysis of single channel currents indicated a cation ion channel with 500 pS conductance and voltage-dependence of the open probability of the AmB channel (Po). A reduction of cis pH to 6 decreased Po and conductance. This effect was also voltage-dependent, being greater at a more positive above −40. The pH changes in the range of 6-8 had no effect on the reversal potential and ion selectivity. Conclusion: Our data indicated that extracellular acidity can reduce AmB activity. PMID:27003977

  10. Transient potassium channels augment degeneracy in hippocampal active dendritic spectral tuning.

    PubMed

    Rathour, Rahul Kumar; Malik, Ruchi; Narayanan, Rishikesh

    2016-01-01

    Hippocampal pyramidal neurons express an intraneuronal map of spectral tuning mediated by hyperpolarization-activated cyclic-nucleotide-gated nonspecific-cation channels. Modeling studies have predicted a critical regulatory role for A-type potassium (KA) channels towards augmenting functional robustness of this map. To test this, we performed patch-clamp recordings from soma and dendrites of rat hippocampal pyramidal neurons, and measured spectral tuning before and after blocking KA channels using two structurally distinct pharmacological agents. Consistent with computational predictions, we found that blocking KA channels resulted in a significant reduction in resonance frequency and significant increases in input resistance, impedance amplitude and action-potential firing frequency across the somato-apical trunk. Furthermore, across all measured locations, blocking KA channels enhanced temporal summation of postsynaptic potentials and critically altered the impedance phase profile, resulting in a significant reduction in total inductive phase. Finally, pair-wise correlations between intraneuronal percentage changes (after blocking KA channels) in different measurements were mostly weak, suggesting differential regulation of different physiological properties by KA channels. Our results unveil a pivotal role for fast transient channels in regulating theta-frequency spectral tuning and intrinsic phase response, and suggest that degeneracy with reference to several coexisting functional maps is mediated by cross-channel interactions across the active dendritic arbor.

  11. Aminolevulinic acid dehydratase activity in American dippers (Cinclus mexicanus) from a metal-impacted stream.

    PubMed

    Strom, Sean M; Ramsdell, Howard S; Archuleta, Andrew S

    2002-01-01

    Blood samples collected from adult and nestling American dippers (Cinclus mexicanus) along the Arkansas River (CO, USA), a stream impacted by discharges from historical mining operations, and a reference stream were analyzed for lead concentration and delta-aminolevulinic acid dehydratase (ALAD) activity. Median ALAD activities of adult and nestling dippers from the Arkansas River were found to be significantly different from median ALAD activities of reference adults and nestlings (p = 0.002 and p = 0.028). Median ALAD activity for adult dippers from the Arkansas River was more than 50% lower relative to reference adults and activity approached a level close to 50% lower in nestlings from the same site. Median blood lead concentrations from adult (range 15.4-386.0 ppb) and nestling (range 12.1-323.0 ppb) dippers from the Arkansas River were found to be significantly different from median blood lead concentrations of reference adult (range 4.2-29.6 ppb) and nestling (range 4.2-8.2 ppb) dippers (p < 0.001 and p = 0.011). The median hematocrit level in adult dippers did not vary between sites (p = 0.73), whereas the median hematocrit level of nestling dippers from the reference site was significantly lower compared to Arkansas River nestlings (p = 0.042). Blood lead concentration in both adult and nestling dippers was found to be significantly correlated with invertebrate lead concentration (r = 0.81, p < 0.001 and r = 0.62, p = 0.01, respectively). Highly significant negative correlations were observed between blood lead concentration and ALAD activity in both adult and nestling dippers (r = -0.86, p < 0.001 and r = -0.84, p < 0.001, respectively). This study suggests that dippers (both adults and nestlings) from the Arkansas River have significantly lower ALAD activity and significantly higher blood lead concentrations compared to reference values. The measurement of ALAD activity may be a sensitive and accurate biomarker for environmental lead exposure in dippers

  12. Ion Channels in Regulation of Neuronal Regenerative Activities

    PubMed Central

    Chen, Dongdong; Yu, Shan Ping; Wei, Ling

    2014-01-01

    The regeneration of the nervous system is achieved by the regrowth of damaged neuronal axons, the restoration of damaged nerve cells, and the generation of new neurons to replace those that have been lost. In the central nervous system the regenerative ability is limited by various factors including damaged oligodendrocytes that are essential for neuronal axon myelination, an emerging glial scar, and secondary injury in the surrounding areas. Stem cell transplantation therapy has been shown to be a promising approach to treating neurodegenerative diseases because of the regenerative capability of stem cells that secrete neurotrophic factors and give rise to differentiated progeny. However, some issues of stem cell transplantation, such as survival, homing, and efficiency of neural differentiation after transplantation, still need to be improved. Ion channels allow for the exchange of ions between the intra- and extracellular spaces or between the cytoplasm and organelles. These ion channels maintain the ion homeostasis in the brain and play a key role in regulating the physiological function of the nervous system and allowing the processing of neuronal signals. In seeking a potential strategy to enhance the efficacy of stem cell therapy in neurological and neurodegenerative diseases, this review briefly summarizes the roles of ion channels in cell proliferation, differentiation, migration, chemotropic axon guidance of growth cones and axon outgrowth after injury. PMID:24399572

  13. Characterization of ryanodine receptor type 1 single channel activity using "on-nucleus" patch clamp.

    PubMed

    Wagner, Larry E; Groom, Linda A; Dirksen, Robert T; Yule, David I

    2014-08-01

    In this study, we provide the first description of the biophysical and pharmacological properties of ryanodine receptor type 1 (RyR1) expressed in a native membrane using the on-nucleus configuration of the patch clamp technique. A stable cell line expressing rabbit RyR1 was established (HEK-RyR1) using the FLP-in 293 cell system. In contrast to untransfected cells, RyR1 expression was readily demonstrated by immunoblotting and immunocytochemistry in HEK-RyR1 cells. In addition, the RyR1 agonists 4-CMC and caffeine activated Ca(2+) release that was inhibited by high concentrations of ryanodine. On nucleus patch clamp was performed in nuclei prepared from HEK-RyR1 cells. Raising the [Ca(2+)] in the patch pipette resulted in the appearance of a large conductance cation channel with well resolved kinetics and the absence of prominent subconductance states. Current versus voltage relationships were ohmic and revealed a chord conductance of ∼750pS or 450pS in symmetrical 250mM KCl or CsCl, respectively. The channel activity was markedly enhanced by caffeine and exposure to ryanodine resulted in the appearance of a subconductance state with a conductance ∼40% of the full channel opening with a Po near unity. In total, these properties are entirely consistent with RyR1 channel activity. Exposure of RyR1 channels to cyclic ADP ribose (cADPr), nicotinic acid adenine dinucleotide phosphate (NAADP) or dantrolene did not alter the single channel activity stimulated by Ca(2+), and thus, it is unlikely these molecules directly modulate RyR1 channel activity. In summary, we describe an experimental platform to monitor the single channel properties of RyR channels. We envision that this system will be influential in characterizing disease-associated RyR mutations and the molecular determinants of RyR channel modulation.

  14. Kv Channel S1-S2 Linker Working as a Binding Site of Human β-Defensin 2 for Channel Activation Modulation.

    PubMed

    Feng, Jing; Yang, Weishan; Xie, Zili; Xiang, Fang; Cao, Zhijian; Li, Wenxin; Hu, Hongzhen; Chen, Zongyun; Wu, Yingliang

    2015-06-19

    Among the three extracellular domains of the tetrameric voltage-gated K(+) (Kv) channels consisting of six membrane-spanning helical segments named S1-S6, the functional role of the S1-S2 linker still remains unclear because of the lack of a peptide ligand. In this study, the Kv1.3 channel S1-S2 linker was reported as a novel receptor site for human β-defensin 2 (hBD2). hBD2 shifts the conductance-voltage relationship curve of the human Kv1.3 channel in a positive direction by nearly 10.5 mV and increases the activation time constant for the channel. Unlike classical gating modifiers of toxin peptides from animal venoms, which generally bind to the Kv channel S3-S4 linker, hBD2 only targets residues in both the N and C termini of the S1-S2 linker to influence channel gating and inhibit channel currents. The increment and decrement of the basic residue number in a positively charged S4 sensor of Kv1.3 channel yields conductance-voltage relationship curves in the positive direction by ∼31.2 mV and 2-4 mV, which suggests that positively charged hBD2 is anchored in the channel S1-S2 linker and is modulating channel activation through electrostatic repulsion with an adjacent S4 helix. Together, these findings reveal a novel peptide ligand that binds with the Kv channel S1-S2 linker to modulate channel activation. These findings also highlight the functional importance of the Kv channel S1-S2 linker in ligand recognition and modification of channel activation.

  15. Structure-activity studies on 1,4-dihydropyridine calcium channel antagonists and activators

    SciTech Connect

    Joslyn, A.F.

    1986-01-01

    Four series of 1,4-dihydropyridine Ca{sup 2+} channel antagonists related to mifedipine were synthesized by a modified Hantzsch procedure to determine the effects of ester (C{sub 3} = CO{sub 2}Me, C{sub 5} = CO{sub 2}R) and phenyl (C{sub 4}) substituents on pharmacological and radioligand binding ((H)nitrendipine) activities in guinea pig ileal longitudinal smooth muscle. Two series of Ca{sup 2+} channel activator 1,4-dihydropyridines, BAY K 8644 (C{sub 3} = NO{sub 2}, C{sub 5} = CO{sub 2}Me) and CGP 28392 (C{sub 2,3} = lactone, C{sub 5} = CO{sub 2}Me) were biochemically evaluated by inhibition of ({sup 3}H)nitrendipine binding in guinea pig ileal longitudinal smooth muscle membranes to establish fundamental structure-activity requirements. A homologous series of bis-1,4-dihydropyridines were synthesized, pharmacologically and biochemically evaluated in an attempt to explore the distribution of the 1,4-dihydropyridine receptor in guinea pig ileal longitudinal smooth muscle membranes. Several potential affinity labels including ester substituted 3- and 4-fluorosulfonyl benzoyl and isothiocyanate derivatives were synthesized and evaluated by inhibition of ({sup 3}H)nitrendipine binding.

  16. Discontinuous ephemeral streams

    NASA Astrophysics Data System (ADS)

    Bull, William B.

    1997-07-01

    Many ephemeral streams in western North America flowed over smooth valley floors before transformation from shallow discontinuous channels into deep arroyos. These inherently unstable streams of semiarid regions are sensitive to short-term climatic changes, and to human impacts, because hillslopes supply abundant sediment to infrequent large streamflow events. Discontinuous ephemeral streams appear to be constantly changing as they alternate between two primary modes of operation; either aggradation or degradation may become dominant. Attainment of equilibrium conditions is brief. Disequilibrium is promoted by channel entrenchment that causes the fall of local base level, and by deposition of channel fans that causes the rise of local base level. These opposing base-level processes in adjacent reaches are maintained by self-enhancing feedback mechanisms. The threshold between erosion and deposition is crossed when aggradational or degradational reaches shift upstream or downstream. Extension of entrenched reaches into channel fans tends to create continuous arroyos. Upvalley migration of fan apexes tends to create depositional valley floors with few stream channels. Less than 100 years is required for arroyo cutting, but more than 500 years is required for complete aggradation of entrenched stream channels and valley floors. Discontinuous ephemeral streams have a repetitive sequence of streamflow characteristics that is as distinctive as sequences of meander bends or braided gravel bars in perennial rivers. The sequence changes from degradation to aggradation — headcuts concentrate sheetflow, a single trunk channel conveys flow to the apex of a channel fan, braided distributary channels end in an area of diverging sheetflow, and converging sheetflow drains to headcuts. The sequence is repeated at intervals ranging from 15 m for small streams to more than 10 km for large streams. Lithologic controls on the response of discontinuous ephemeral streams include: (1

  17. UCP3 Regulates Single-Channel Activity of the Cardiac mCa1.

    PubMed

    Motloch, Lukas J; Gebing, Tina; Reda, Sara; Schwaiger, Astrid; Wolny, Martin; Hoppe, Uta C

    2016-08-01

    Mitochondrial Ca(2+) uptake (mCa(2+) uptake) is thought to be mediated by the mitochondrial Ca(2+) uniporter (MCU). UCP2 and UCP3 belong to a superfamily of mitochondrial ion transporters. Both proteins are expressed in the inner mitochondrial membrane of the heart. Recently, UCP2 was reported to modulate the function of the cardiac MCU related channel mCa1. However, the possible role of UCP3 in modulating cardiac mCa(2+) uptake via the MCU remains inconclusive. To understand the role of UCP3, we analyzed cardiac mCa1 single-channel activity in mitoplast-attached single-channel recordings from isolated murine cardiac mitoplasts, from adult wild-type controls (WT), and from UCP3 knockout mice (UCP3(-/-)). Single-channel registrations in UCP3(-/-) confirmed a murine voltage-gated Ca(2+) channel, i.e., mCa1, which was inhibited by Ru360. Compared to WT, mCa1 in UCP3(-/-) revealed similar single-channel characteristics. However, in UCP3(-/-) the channel exhibited decreased single-channel activity, which was insensitive to adenosine triphosphate (ATP) inhibition. Our results suggest that beyond UCP2, UCP3 also exhibits regulatory effects on cardiac mCa1/MCU function. Furthermore, we speculate that UCP3 might modulate previously described inhibitory effects of ATP on mCa1/MCU activity as well.

  18. Store-operated Ca2+ channels blockers inhibit lipopolysaccharide induced astrocyte activation.

    PubMed

    Li, Jian-Hua; Zhao, Shen-Ting; Wu, Cui-Ying; Cao, Xiong; Peng, Miao-Ru; Li, Shu-Ji; Liu, Xiao-Ai; Gao, Tian-Ming

    2013-10-01

    The destruction of calcium homeostasis is an important factor leading to neurological diseases. Store-operated Ca(2+) (SOC) channels are essential for Ca(2+) homeostasis in many cell types. However, whether SOC channels are involved in astrocyte activation induced by lipopolysaccharide (LPS) still remains unknown. In this study, we used LPS as an exogenous stimulation to investigate the role of SOC channels in astrocyte activation. Using calcium imaging technology, we first found that SOC channels blockers, 1-[h-[3-(4-methoxyphenyl)propoxy]-4-methoxyphenethyl]-1H-imidazole (SKF-96365) and 2-aminoethyldiphenyl borate (2-APB), inhibited LPS induced [Ca(2+)]i increase, which prompted us to speculate that SOC channels may be involved in LPS induced astrocyte activation. Further experiments confirmed our speculation shown as SOC channels blockers inhibited LPS induced astrocyte activation characterized as cell proliferation by MTS and BrdU assay, raise in glial fibrillary acidic protein expression by immunofluorescence and Western Blot and secretion of interleukin 6 (IL-6) and interleukin 1β (IL-1β) by ELISA. So, our studies showed that SOC channels are involved in LPS-induced astrocyte activation.

  19. Fast and slow activation kinetics of voltage-gated sodium channels in molluscan neurons.

    PubMed

    Gilly, W F; Gillette, R; McFarlane, M

    1997-05-01

    Whole cell patch-clamp recordings of Na current (I(Na)) were made under identical experimental conditions from isolated neurons from cephalopod (Loligo, Octopus) and gastropod (Aplysia, Pleurobranchaea, Doriopsilla) species to compare properties of activation gating. Voltage dependence of peak Na conductance (gNa) is very similar in all cases, but activation kinetics in the gastropod neurons studied are markedly slower. Kinetic differences are very pronounced only over the voltage range spanned by the gNa-voltage relation. At positive and negative extremes of voltage, activation and deactivation kinetics of I(Na) are practically indistinguishable in all species studied. Voltage-dependent rate constants underlying activation of the slow type of Na channel found in gastropods thus appear to be much more voltage dependent than are the equivalent rates in the universally fast type of channel that predominates in cephalopods. Voltage dependence of inactivation kinetics shows a similar pattern and is representative of activation kinetics for the two types of Na channels. Neurons with fast Na channels can thus make much more rapid adjustments in the number of open Na channels at physiologically relevant voltages