Science.gov

Sample records for activity northern blot

  1. BlotBase: a northern blot database.

    PubMed

    Schlamp, K; Weinmann, A; Krupp, M; Maass, T; Galle, Pr; Teufel, A

    2008-12-31

    With the availability of high-throughput gene expression analysis, multiple public expression databases emerged, mostly based on microarray expression data. Although these databases are of significant biomedical value, they do hold significant drawbacks, especially concerning the reliability of single gene expression profiles obtained by microarray data. Simultaneously, reliable data on an individual gene's expression are often published as single northern blots in individual publications. These data were not yet available for high-throughput screening. To reduce the gap between high-throughput expression data and individual highly reliable expression data, we designed a novel database "BlotBase", a freely and easily accessible database, currently containing approximately 700 published northern blots of human or mouse origin (http://www.medicalgenomics.org/Databases/BlotBase). As the database is open for public data submission, we expect this database to quickly become a large expression profiling resource, eventually providing higher reliability in high-throughput gene expression analysis. Realizing BlotBase, Pubmed was searched manually and by computer based text mining methods to obtain publications containing northern blot results. Subsequently, northern blots were extracted and expression values of different tissues calculated utilizing Image J. All data were made available through a user friendly web front end. The data may be searched by either full text search or list of available northern blots of a specific tissue. Northern blot expression profiles were displayed by three expression states as well as a bar chart, allowing for automated evaluation. Furthermore, we integrated additional features, e.g. instant access to the corresponding RNA sequence or primer design tools making further expression analysis more convenient. Finally, through a semiautomatic submission system this database was opened to the bioinformatics community. PMID:18838116

  2. Multiplexed miRNA northern blots via hybridization chain reaction.

    PubMed

    Schwarzkopf, Maayan; Pierce, Niles A

    2016-09-01

    Northern blots enable detection of a target RNA of interest in a biological sample using standard benchtop equipment. miRNAs are the most challenging targets as they must be detected with a single short nucleic acid probe. With existing approaches, it is cumbersome to perform multiplexed blots in which several RNAs are detected simultaneously, impeding the study of interacting regulatory elements. Here, we address this shortcoming by demonstrating multiplexed northern blotting based on the mechanism of hybridization chain reaction (HCR). With this approach, nucleic acid probes complementary to RNA targets trigger chain reactions in which fluorophore-labeled DNA hairpins self-assemble into tethered fluorescent amplification polymers. The programmability of HCR allows multiple amplifiers to operate simultaneously and independently within a blot, enabling straightforward multiplexing. We demonstrate simultaneous detection of three endogenous miRNAs in total RNA extracted from 293T and HeLa cells. For a given target, HCR signal scales linearly with target abundance, enabling relative and absolute quantitation. Using non-radioactive HCR, sensitive and selective miRNA detection is achieved using 2'OMe-RNA probes. The HCR northern blot protocol takes ∼1.5 days independent of the number of target RNAs. PMID:27270083

  3. Multiplexed miRNA northern blots via hybridization chain reaction

    PubMed Central

    Schwarzkopf, Maayan; Pierce, Niles A.

    2016-01-01

    Northern blots enable detection of a target RNA of interest in a biological sample using standard benchtop equipment. miRNAs are the most challenging targets as they must be detected with a single short nucleic acid probe. With existing approaches, it is cumbersome to perform multiplexed blots in which several RNAs are detected simultaneously, impeding the study of interacting regulatory elements. Here, we address this shortcoming by demonstrating multiplexed northern blotting based on the mechanism of hybridization chain reaction (HCR). With this approach, nucleic acid probes complementary to RNA targets trigger chain reactions in which fluorophore-labeled DNA hairpins self-assemble into tethered fluorescent amplification polymers. The programmability of HCR allows multiple amplifiers to operate simultaneously and independently within a blot, enabling straightforward multiplexing. We demonstrate simultaneous detection of three endogenous miRNAs in total RNA extracted from 293T and HeLa cells. For a given target, HCR signal scales linearly with target abundance, enabling relative and absolute quantitation. Using non-radioactive HCR, sensitive and selective miRNA detection is achieved using 2′OMe-RNA probes. The HCR northern blot protocol takes ∼1.5 days independent of the number of target RNAs. PMID:27270083

  4. Quantitative Northern Blot Analysis of Mammalian rRNA Processing.

    PubMed

    Wang, Minshi; Pestov, Dimitri G

    2016-01-01

    Assembly of eukaryotic ribosomes is an elaborate biosynthetic process that begins in the nucleolus and requires hundreds of cellular factors. Analysis of rRNA processing has been instrumental for studying the mechanisms of ribosome biogenesis and effects of stress conditions on the molecular milieu of the nucleolus. Here, we describe the quantitative analysis of the steady-state levels of rRNA precursors, applicable to studies in mammalian cells and other organisms. We include protocols for gel electrophoresis and northern blotting of rRNA precursors using procedures optimized for the large size of these RNAs. We also describe the ratio analysis of multiple precursors, a technique that facilitates the accurate assessment of changes in the efficiency of individual pre-rRNA processing steps. PMID:27576717

  5. Optimization of northern analysis by vacuum-blotting, RNA-transfer visualization, and ultraviolet fixation

    SciTech Connect

    Kroczek, R.A.; Siebert, E. )

    1990-01-01

    We have optimized Northern analysis at several steps. Overnight electrophoresis was replaced by short gel runs and overnight capillary transfer by rapid vacuum-blotting adapted to Northern analysis. Short uv irradiation was used as a substitute for the usual RNA fixation by baking. Direct staining of RNA before electrophoresis made it possible to check RNA integrity and to evaluate the quality of the size separation immediately after electrophoresis. In this system, RNA transfer onto the membrane support could also be quickly assessed after the blotting step. The net result of all modifications was a doubling of the autoradiography signal compared with that obtained by modern Northern protocols. At the same time, the duration of the procedure was shortened drastically, allowing an autoradiography signal to be obtained within 24 h.

  6. Exploring the Foundation of Genomics: A Northern Blot Reference set for the Comparative Analysis of Transcript Profiling Technologies

    PubMed Central

    Kemmer, Danielle; Faxén, Margareta; Hodges, Emily; Lim, Jonathan; Herzog, Elena; Ljungström, Elsebrit; Lundmark, Anders; Olsen, Mary K.; Podowski, Raf; Sonnhammer, Erik L. L.; Nilsson, Peter; Reimers, Mark; Lenhard, Boris; Roberds, Steven L.; Wahlestedt, Claes; Höög, Christer; Agarwal, Pankaj

    2004-01-01

    In this paper we aim to create a reference data collection of Northern blot results and demonstrate how such a collection can enable a quantitative comparison of modern expression profiling techniques, a central component of functional genomics studies. Historically, Northern blots were the de facto standard for determining RNA transcript levels. However, driven by the demand for analysis of large sets of genes in parallel, high-throughput methods, such as microarrays, dominate modern profiling efforts. To facilitate assessment of these methods, in comparison to Northern blots, we created a database of published Northern results obtained with a standardized commercial multiple tissue blot (dbMTN). In order to demonstrate the utility of the dbMTN collection for technology comparison, we also generated expression profiles for genes across a set of human tissues, using multiple profiling techniques. No method produced profiles that were strongly correlated with the Northern blot data. The highest correlations to the Northern blot data were determined with microarrays for the subset of genes observed to be specifically expressed in a single tissue in the Northern analyses. The database and expression profiling data are available via the project website (http://www.cisreg.ca). We believe that emphasis on multitechnique validation of expression profiles is justified, as the correlation results between platforms are not encouraging on the whole. Supplementary material for this article can be found at: http://www.interscience.wiley.com/jpages/1531-6912/suppmat PMID:18629180

  7. Immuno-Northern Blotting: Detection of RNA Modifications by Using Antibodies against Modified Nucleosides.

    PubMed

    Mishima, Eikan; Jinno, Daisuke; Akiyama, Yasutoshi; Itoh, Kunihiko; Nankumo, Shinnosuke; Shima, Hisato; Kikuchi, Koichi; Takeuchi, Yoichi; Elkordy, Alaa; Suzuki, Takehiro; Niizuma, Kuniyasu; Ito, Sadayoshi; Tomioka, Yoshihisa; Abe, Takaaki

    2015-01-01

    The biological roles of RNA modifications are still largely not understood. Thus, developing a method for detecting RNA modifications is important for further clarification. We developed a method for detecting RNA modifications called immuno-northern blotting (INB) analysis and herein introduce its various capabilities. This method involves the separation of RNAs using either polyacrylamide or agarose gel electrophoresis, followed by transfer onto a nylon membrane and subsequent immunoblotting using antibodies against modified nucleosides for the detection of specific modifications. We confirmed that INB with the antibodies for 1-methyladenosine (m1A), N6-methyladenosine (m6A), pseudouridine, and 5-methylcytidine (m5C) showed different modifications in a variety of RNAs from various species and organelles. INB with the anti-m5C antibody revealed that the antibody cross-reacted with another modification on DNA, suggesting the application of this method for characterization of the antibody for modified nucleosides. Additionally, using INB with the antibody for m1A, which is a highly specific modification in eukaryotic tRNA, we detected tRNA-derived fragments known as tiRNAs under the cellular stress response, suggesting the application for tracking target RNA containing specific modifications. INB with the anti-m6A antibody confirmed the demethylation of m6A by the specific demethylases fat mass and obesity-associated protein (FTO) and ALKBH5, suggesting its application for quantifying target modifications in separated RNAs. Furthermore, INB demonstrated that the knockdown of FTO and ALKBH5 increased the m6A modification in small RNAs as well as in mRNA. The INB method has high specificity, sensitivity, and quantitative capability, and it can be employed with conventional experimental apparatus. Therefore, this method would be useful for research on RNA modifications and metabolism. PMID:26606401

  8. Immuno-Northern Blotting: Detection of RNA Modifications by Using Antibodies against Modified Nucleosides

    PubMed Central

    Akiyama, Yasutoshi; Itoh, Kunihiko; Nankumo, Shinnosuke; Shima, Hisato; Kikuchi, Koichi; Takeuchi, Yoichi; Elkordy, Alaa; Suzuki, Takehiro; Niizuma, Kuniyasu; Ito, Sadayoshi; Tomioka, Yoshihisa; Abe, Takaaki

    2015-01-01

    The biological roles of RNA modifications are still largely not understood. Thus, developing a method for detecting RNA modifications is important for further clarification. We developed a method for detecting RNA modifications called immuno-northern blotting (INB) analysis and herein introduce its various capabilities. This method involves the separation of RNAs using either polyacrylamide or agarose gel electrophoresis, followed by transfer onto a nylon membrane and subsequent immunoblotting using antibodies against modified nucleosides for the detection of specific modifications. We confirmed that INB with the antibodies for 1-methyladenosine (m1A), N6-methyladenosine (m6A), pseudouridine, and 5-methylcytidine (m5C) showed different modifications in a variety of RNAs from various species and organelles. INB with the anti-m5C antibody revealed that the antibody cross-reacted with another modification on DNA, suggesting the application of this method for characterization of the antibody for modified nucleosides. Additionally, using INB with the antibody for m1A, which is a highly specific modification in eukaryotic tRNA, we detected tRNA-derived fragments known as tiRNAs under the cellular stress response, suggesting the application for tracking target RNA containing specific modifications. INB with the anti-m6A antibody confirmed the demethylation of m6A by the specific demethylases fat mass and obesity-associated protein (FTO) and ALKBH5, suggesting its application for quantifying target modifications in separated RNAs. Furthermore, INB demonstrated that the knockdown of FTO and ALKBH5 increased the m6A modification in small RNAs as well as in mRNA. The INB method has high specificity, sensitivity, and quantitative capability, and it can be employed with conventional experimental apparatus. Therefore, this method would be useful for research on RNA modifications and metabolism. PMID:26606401

  9. The gene encoding vitamin K-dependent anticoagulant protein S is expressed in multiple rabbit organs as demonstrated by northern blotting, in situ hybridization, and immunohistochemistry.

    PubMed

    He, X; Shen, L; Bjartell, A; Dahlbäck, B

    1995-01-01

    Vitamin K-dependent protein S is an anticoagulant plasma protein that functions as a co-factor to activated protein C in the degradation of coagulation factors Va and VIIIa. We investigated the tissue/cellular distribution of protein S synthesis by Northern blotting, in situ hybridization, and immunohistochemistry. Northern blotting together with in situ hybridization, using specific oligodeoxynucleotide probes, demonstrated protein S mRNA in liver, lung, testis, epididymis, ovary, uterus, and brain. In the reproductive system, protein S mRNA was present in the cytoplasm of Leydig cells, interstitial cells of the ovary, epithelial cells of the epididymis, and in the endometrium, including endometrial mucous glandular membrane in the myometrium. Bronchial epithelial cells and alveolar macrophages were positive in the respiratory system. In the central nervous system, pyramidal neurons in the cerebral cortex and in the hippocampal region, and dentate fascia neurons gave strongly positive signals. Immunohistochemistry with monoclonal antibodies yielded a staining pattern that correlated well with results of in situ hybridization. In conclusion, results from Northern blotting, in situ hybridization, and immunohistochemistry suggested that rabbit protein S is expressed in several extrahepatic tissues. The presence of protein S transcripts in these fully differentiated cells suggests a cell type-specific gene expression which may be related to local anticoagulation or to other as yet unknown protein S functions. PMID:7822769

  10. Comparison of the rotavirus nonstructural protein NSP1 (NS53) from different species by sequence analysis and northern blot hybridization.

    PubMed

    Dunn, S J; Cross, T L; Greenberg, H B

    1994-08-15

    The nucleotide sequence of gene 5 encoding the rotavirus nonstructural protein NSP1 (NS53) of 6 strains (EW, EHP, RRV, I321, OSU, and Gottfried) was determined and compared to 6 previously reported strains (SA11, UK, RF, Hu803, DS-1, and Wa). The 12 rotavirus strains were derived from a total of five separate species (murine, bovine, simian, porcine, and human). Gene sizes ranged from 1564 to 1611 nucleotides in length and the deduced protein sequences were found to be 486 to 495 amino acids in length. Comparisons of NSP1 amino acid sequences showed identities ranging from 36 to 92%. This diversity was most evident between strains from different species. Phylogenetic analysis revealed a clustering of NSP1 sequences according to species origin with the exception that the human and porcine strains were included in a single grouping. Northern blot hybridizations using additional rotavirus strains from the five species confirmed the grouping found by sequence analysis. The species specificity of NSP1 is consistent with the hypothesis that NSP1 plays a role in host range restriction. PMID:8030275

  11. Southern blotting.

    PubMed

    Brown, T

    2001-05-01

    Southern blotting is the transfer of DNA fragments from an electrophoresis gel to a membrane support (the properties and advantages of the different types of membrane, transfer buffer, and transfer method are discussed in detail), resulting in immobilization of the DNA fragments, so the membrane carries a semipermanent reproduction of the banding pattern of the gel. After immobilization, the DNA can be subjected to hybridization analysis, enabling bands with sequence similarity to a labeled probe to be identified. This appendix describes Southern blotting via upward capillary transfer of DNA from an agarose gel onto a nylon or nitrocellulose membrane, using a high-salt transfer buffer to promote binding of DNA to the membrane. With the high-salt buffer, the DNA becomes bound to the membrane during transfer but not permanently immobilized. Immobilization is achieved by UV irradiation (for nylon) or baking (for nitrocellulose). A Support Protocol describes how to calibrate a UV transilluminator for optimal UV irradiation of a nylon membrane. An alternate protocol details transfer using nylon membranes and an alkaline buffer, and is primarily used with positively charged nylon membranes. The advantage of this combination is that no post-transfer immobilization step is required, as the positively charged membrane binds DNA irreversibly under alkaline transfer conditions. The method can also be used with neutral nylon membranes but less DNA will be retained. A second alternate protocol describes a transfer method based on a different transfer-stack setup. The traditional method of upward capillary transfer of DNA from gel to membrane described in the first basic and alternate protocols has certain disadvantages, notably the fact that the gel can become crushed by the weighted filter papers and paper towels that are laid on top of it. This slows down the blotting process and may reduce the amount of DNA that can be transferred. The downward capillary method described in

  12. A western blot assay to measure cyclin dependent kinase activity in cells or in vitro without the use of radioisotopes.

    PubMed

    Lewis, Cody W; Taylor, Ryan G; Kubara, Philip M; Marshall, Kris; Meijer, Laurent; Golsteyn, Roy M

    2013-09-17

    We developed a quantitative method to measure the activity of cyclin-dependent kinases (Cdks) by western blotting, without radioisotopes. We prepared a recombinant protein substrate based upon the natural Cdk1 substrate, PP1Cα. By combining this substrate in a western blot method using fluorochrome based antibodies and phospho-imager analysis, we measured the Km of ATP binding to Cdk1 to be 3.5 μM. We then measured Cdk1 activity in cell extracts from interphase or mitotic cells, and demonstrated that previously identified Cdk inhibitors could be detected by this assay. Our data show that we have a safe, reliable assay to identify Cdk1 inhibitors and measure Cdk1 activity. PMID:23954627

  13. MicroRNA fate upon targeting with anti-miRNA oligonucleotides as revealed by an improved Northern-blot-based method for miRNA detection

    PubMed Central

    Torres, Adrian G.; Fabani, Martin M.; Vigorito, Elena; Gait, Michael J.

    2011-01-01

    MicroRNAs (miRNAs) are small non-coding RNAs involved in fine-tuning of gene regulation. Antisense oligonucleotides (ONs) are promising tools as anti-miRNA (anti-miR) agents toward therapeutic applications and to uncover miRNA function. Such anti-miR ONs include 2′-O-methyl (OMe), cationic peptide nucleic acids like K-PNA-K3, and locked nucleic acid (LNA)-based anti-miRs such as LNA/DNA or LNA/OMe. Northern blotting is a widely used and robust technique to detect miRNAs. However, miRNA quantification in the presence of anti-miR ONs has proved to be challenging, due to detection artifacts, which has led to poor understanding of miRNA fate upon anti-miR binding. Here we show that anti-miR ON bound to miR-122 can prevent the miRNA from being properly precipitated into the purified RNA fraction using the standard RNA extraction protocol (TRI-Reagent), yielding an RNA extract that does not reflect the real cellular levels of the miRNA. An increase in the numbers of equivalents of isopropanol during the precipitation step leads to full recovery of the targeted miRNA back into the purified RNA extract. Following our improved protocol, we demonstrate by Northern blotting, in conjunction with a PNA decoy strategy and use of high denaturing PAGE, that high-affinity anti-miRs (K-PNA-K3, LNA/DNA, and LNA/OMe) sequester miR-122 without causing miRNA degradation, while miR-122 targeting with a lower-affinity anti-miR (OMe) seems to promote degradation of the miRNA. The technical issues explored in this work will have relevance for other hybridization-based techniques for miRNA quantification in the presence of anti-miR ONs. PMID:21441346

  14. MicroRNA fate upon targeting with anti-miRNA oligonucleotides as revealed by an improved Northern-blot-based method for miRNA detection.

    PubMed

    Torres, Adrian G; Fabani, Martin M; Vigorito, Elena; Gait, Michael J

    2011-05-01

    MicroRNAs (miRNAs) are small non-coding RNAs involved in fine-tuning of gene regulation. Antisense oligonucleotides (ONs) are promising tools as anti-miRNA (anti-miR) agents toward therapeutic applications and to uncover miRNA function. Such anti-miR ONs include 2'-O-methyl (OMe), cationic peptide nucleic acids like K-PNA-K3, and locked nucleic acid (LNA)-based anti-miRs such as LNA/DNA or LNA/OMe. Northern blotting is a widely used and robust technique to detect miRNAs. However, miRNA quantification in the presence of anti-miR ONs has proved to be challenging, due to detection artifacts, which has led to poor understanding of miRNA fate upon anti-miR binding. Here we show that anti-miR ON bound to miR-122 can prevent the miRNA from being properly precipitated into the purified RNA fraction using the standard RNA extraction protocol (TRI-Reagent), yielding an RNA extract that does not reflect the real cellular levels of the miRNA. An increase in the numbers of equivalents of isopropanol during the precipitation step leads to full recovery of the targeted miRNA back into the purified RNA extract. Following our improved protocol, we demonstrate by Northern blotting, in conjunction with a PNA decoy strategy and use of high denaturing PAGE, that high-affinity anti-miRs (K-PNA-K3, LNA/DNA, and LNA/OMe) sequester miR-122 without causing miRNA degradation, while miR-122 targeting with a lower-affinity anti-miR (OMe) seems to promote degradation of the miRNA. The technical issues explored in this work will have relevance for other hybridization-based techniques for miRNA quantification in the presence of anti-miR ONs. PMID:21441346

  15. Illuminating Northern California's Active Faults

    NASA Astrophysics Data System (ADS)

    Prentice, Carol S.; Crosby, Christopher J.; Whitehill, Caroline S.; Arrowsmith, J. Ramón; Furlong, Kevin P.; Phillips, David A.

    2009-02-01

    Newly acquired light detection and ranging (lidar) topographic data provide a powerful community resource for the study of landforms associated with the plate boundary faults of northern California (Figure 1). In the spring of 2007, GeoEarthScope, a component of the EarthScope Facility construction project funded by the U.S. National Science Foundation, acquired approximately 2000 square kilometers of airborne lidar topographic data along major active fault zones of northern California. These data are now freely available in point cloud (x, y, z coordinate data for every laser return), digital elevation model (DEM), and KMZ (zipped Keyhole Markup Language, for use in Google Earth™ and other similar software) formats through the GEON OpenTopography Portal (http://www.OpenTopography.org/data). Importantly, vegetation can be digitally removed from lidar data, producing high-resolution images (0.5- or 1.0-meter DEMs) of the ground surface beneath forested regions that reveal landforms typically obscured by vegetation canopy (Figure 2).

  16. Southwestern Blotting Assay

    PubMed Central

    Jia, Yinshan; Nagore, Linda; Jarrett, Harry

    2016-01-01

    Southwestern blotting is a technique used to study DNA-protein interactions. This method detects specific DNA-binding proteins by incubating radiolabeled DNA with a gel blot, washing, and visualizing through autoradiography. A blot resulting from 1-dimensional SDS-PAGE reveals the molecular weight of the binding proteins. To increase separation and determine isoelectric point a 2-dimensional gel can be blotted. Additional dimensions of electrophoresis, such as a gel shift (EMSA), can precede isoelectric focusing and SDS-PAGE to further improve separation. Combined with other techniques, such as mass spectrometry, the DNA-binding protein can be identified. PMID:26404144

  17. The western blot

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Western blotting is a technique that involves the separation of proteins by gel electrophoresis, their blotting or transfer to a membrane, and selective immunodetection of an immobilized antigen. This is an important and routine method for protein analysis that depends on the specificity of antibod...

  18. The Dot Blot ELISA.

    ERIC Educational Resources Information Center

    Gerbig, Donald G., Jr.; Fenk, Christopher J.; Goodhart, Amy S.

    2000-01-01

    Uses two laboratory techniques, Enzyme Linked Immunosorbent Assay (ELISA) and Western Blot, to demonstrate antibody-antigen binding concepts. Includes a list of required materials and directions for the procedure, and makes suggestions for classroom applications. (Contains 13 references.) (YDS)

  19. Genomic Southern blot analysis.

    PubMed

    Gebbie, Leigh

    2014-01-01

    This chapter describes a detailed protocol for genomic Southern blot analysis which can be used to detect transgene or endogenous gene sequences in cereal genomes. The protocol follows a standard approach that has been shown to generate high-quality results: size fractionation of genomic DNA; capillary transfer to a nylon membrane; hybridization with a digoxigenin-labelled probe; and detection using a chemiluminescent-based system. High sensitivity and limited background are key to successful Southern blots. The critical steps in this protocol are complete digestion of the right quantity of DNA, careful handling of the membrane to avoid unnecessary background, and optimization of probe concentration and temperatures during the hybridization step. Detailed instructions on how to successfully master these techniques are provided. PMID:24243203

  20. A Comparison of Antibacterial Activity of Selected Thyme (Thymus) Species by Means of the Dot Blot Test with Direct Bioautographic Detection.

    PubMed

    Orłowska, Marta; Kowalska, Teresa; Sajewicz, Mieczysław; Jesionek, Wioleta; Choma, Irena M; Majer-Dziedzic, Barbara; Szymczak, Grażyna; Waksmundzka-Hajnos, Monika

    2015-01-01

    Bioautography carried out with the aid of thin-layer chromatographic adsorbents can be used to assess antibacterial activity in samples of different origin. It can either be used as a simple and cost-effective detection method applied to a developed chromatogram, or to the dot blot test performed on a chromatographic plate, where total antibacterial activity of a sample is scrutinized. It was an aim of this study to compare antibacterial activity of 18 thyme (Thymus) specimens and species (originating from the same gardening plot and harvested in the same period of time) by means of a dot blot test with direct bioautography. A two-step extraction of herbal material was applied, and at step two the polar fraction of secondary metabolites was obtained under the earlier optimized extraction conditions [methanol-water (27+73, v/v), 130°C]. This fraction was then tested for its antibacterial activity against Bacillus subtilis bacteria. It was established that all investigated extracts exhibited antibacterial activity, yet distinct differences were perceived in the size of the bacterial growth inhibition zones among the compared thyme species. Based on the results obtained, T. citriodorus "golden dwarf" (sample No. 5) and T. marschallianus (sample No. 6) were selected as promising targets for further investigations and possible inclusion in a herbal pharmacopeia, which is an essential scientific novelty of this study. PMID:26268965

  1. Quantifying nuclear p65 as a parameter for NF-κB activation: Correlation between ImageStream cytometry, microscopy, and Western blot.

    PubMed

    Maguire, Orla; Collins, Christine; O'Loughlin, Kieran; Miecznikowski, Jeffrey; Minderman, Hans

    2011-06-01

    The nuclear factor kappa B (NF-κB) pathway, which regulates many cellular processes including proliferation, apoptosis, and survival, has emerged as an important therapeutic target in cancer. Activation of the NF-κB transcription factor is associated with nuclear translocation of the p65 component of the complex. Conventional methods employed to determine nuclear translocation of NF-κB either lack statistical robustness (microscopy) or the ability to discern heterogeneity within the sampled populations (Western blotting and Gel Shift assays). The ImageStream platform combines the high image content information of microscopy with the high throughput and multiparameter analysis of flow cytometry which overcomes the aforementioned limitations of conventional assays. It is demonstrated that ImageStream assessment of receptor-mediated (TNFα) and drug (Daunorubicin, DNR)-induced NF-κB translocation in leukemic cell lines correlates well with microscopy analysis and Western blot analysis. It is further demonstrated that ImageStream cytometry enables quantitative assessment of p65 translocation in immunophenotypically defined subpopulations; and that this assessment is highly reproducible. It is also demonstrated that, quantitatively, the DNR-induced nuclear translocation of NF-κB correlates well with a biological response (apoptosis). We conclude that the ImageStream has the potential to be a powerful tool to evaluate NF-κB /p65 activity as a determinant of response to therapies designed to target aberrant NF-κB signaling activities. PMID:21520400

  2. Single-cell western blotting

    PubMed Central

    Hughes, Alex J.; Spelke, Dawn P.; Xu, Zhuchen; Kang, Chi-Chih; Schaffer, David V.; Herr, Amy E.

    2014-01-01

    To measure cell-to-cell variation in protein-mediated functions — a hallmark of biological processes — we developed an approach to conduct ~103 concurrent single-cell western blots (scWesterns) in ~4 hours. A microscope slide supporting a 30 µm-thick photoactive polyacrylamide gel enables western blotting comprised of: settling of single cells into microwells, lysis in situ, gel electrophoresis, photoinitiated blotting to immobilize proteins, and antibody probing. We apply this scWestern to monitor single rat neural stem cell differentiation and responses to mitogen stimulation. The scWestern quantifies target proteins even with off-target antibody binding, multiplexes to 11 protein targets per single cell with detection thresholds of <30,000 molecules, and supports analyses of low starting cell numbers (~200) when integrated with fluorescence activated cell sorting. The scWestern thus overcomes limitations in single-cell protein analysis (i.e., antibody fidelity, sensitivity, and starting cell number) and constitutes a versatile tool for the study of complex cell populations at single-cell resolution. PMID:24880876

  3. Illuminating Northern California’s Active Faults

    USGS Publications Warehouse

    Prentice, Carol S.; Crosby, Christopher J.; Whitehill, Caroline S.; Arrowsmith, J. Ramon; Furlong, Kevin P.; Philips, David A.

    2009-01-01

    Newly acquired light detection and ranging (lidar) topographic data provide a powerful community resource for the study of landforms associated with the plate boundary faults of northern California (Figure 1). In the spring of 2007, GeoEarthScope, a component of the EarthScope Facility construction project funded by the U.S. National Science Foundation, acquired approximately 2000 square kilometers of airborne lidar topographic data along major active fault zones of northern California. These data are now freely available in point cloud (x, y, z coordinate data for every laser return), digital elevation model (DEM), and KMZ (zipped Keyhole Markup Language, for use in Google EarthTM and other similar software) formats through the GEON OpenTopography Portal (http://www.OpenTopography.org/data). Importantly, vegetation can be digitally removed from lidar data, producing high-resolution images (0.5- or 1.0-meter DEMs) of the ground surface beneath forested regions that reveal landforms typically obscured by vegetation canopy (Figure 2)

  4. Hydrothermal Activity in the Northern Guaymas Basin

    NASA Astrophysics Data System (ADS)

    Berndt, C.; Hensen, C.; Mortera-Gutierrez, C. A.; Sarkar, S.; Geilert, S.; Schmidt, M.; Liebetrau, V.; Kipfer, R.; Scholz, F.; Doll, M.; Muff, S.; Karstens, J.; Böttner, C.; Chi, W. C.; Moser, M.; Behrendt, R.; Fiskal, A.; Evans, T.; Planke, S.; Lizarralde, D.; Lever, M. A.

    2015-12-01

    Rift-related magmatism in the Guaymas Basin, Gulf of California induces hydrothermal activity within the basin sediments. Mobilized fluids migrate to the seafloor where they are emitted into the water column changing ocean chemistry and fuelling chemosynthetic ecosystems. New seismic and geochemical data from the northern rift arm of the Guaymas Basin document the variety of fluid expulsion phenomena from large-scale subsurface sediment mobilization related to contact metamorphosis to focused small-scale structures. The geochemical composition of emitted fluids depends largely on the age of the fluid escape structures with respect to the underlying intrusions. Whereas, old structures are dominated by methane emission, young vent sites are characterized by hot fluids that carry a wide range of minerals in solution. The overall high geothermal gradient within the basin (mainly between 160 and 260 °C/km) leads to a thin gas hydrate stability zone. Thus, deep hydrothermal fluid advection affects the gas hydrate system and makes it more dynamic than in colder sedimentary basins.

  5. BLOT Ver. 1.65

    2009-03-24

    BLOT is a graphic program for post-processing finite element analyses output in the EXODUS II database format. It is command driven with free-format input and can drive graphics devices supported by the Sandia Virtual Device Interface. BLOT produces mesh plots of the analysis output variables including deformed mesh plots, line contours, filled (painted) contours, vector plots of two/three variables (velocity vectors), and symbol plots of scalar variables (discrete cracks). Features include pathlines of analysis variablesmore » drawn on the mesh, element selection by material, element birth and death, multiple views combining several displays on each plot, symmetry mirroring, and node and element numbering. X-Y plots of the analysis variables include time vs. variable plots or variable vs. variable plots, and distance vs. variable plots at selected time steps where distance is the accumulated distance between pairs of nodes or element centers. BLOT is written in as portable a form as possible. Fortran code is written in ANSI Standard FORTRAN-77. Machine-specific routines are limited in number and are grouped together to minimize the time required to adapt them to a new system. SEACAS codes have been ported to several Unix systems« less

  6. BLOT Ver. 1.65

    SciTech Connect

    MEYERS, RAY; GLICK, III, JOHN; FORSYTHE, CHRISTI; GILKEY, AMY; SJAARDEMA, GREGORY

    2009-03-24

    BLOT is a graphic program for post-processing finite element analyses output in the EXODUS II database format. It is command driven with free-format input and can drive graphics devices supported by the Sandia Virtual Device Interface. BLOT produces mesh plots of the analysis output variables including deformed mesh plots, line contours, filled (painted) contours, vector plots of two/three variables (velocity vectors), and symbol plots of scalar variables (discrete cracks). Features include pathlines of analysis variables drawn on the mesh, element selection by material, element birth and death, multiple views combining several displays on each plot, symmetry mirroring, and node and element numbering. X-Y plots of the analysis variables include time vs. variable plots or variable vs. variable plots, and distance vs. variable plots at selected time steps where distance is the accumulated distance between pairs of nodes or element centers. BLOT is written in as portable a form as possible. Fortran code is written in ANSI Standard FORTRAN-77. Machine-specific routines are limited in number and are grouped together to minimize the time required to adapt them to a new system. SEACAS codes have been ported to several Unix systems

  7. Active Venting System Offshore Northern Norway

    NASA Astrophysics Data System (ADS)

    Chand, Shyam; Rise, Leif; Bellec, Valérie; Dolan, Margaret; Bøe, Reidulv; Thorsnes, Terje; Buhl-Mortensen, Pål; Buhl-Mortensen, Lene

    2008-07-01

    A combined sediment-sampling, high-resolution seismic, multiple echo sounder, and video survey was conducted offshore Vesterålen, northern Norway, in October 2007 as part of the ongoing Marine Area Database for Norwegian Coast and Oceanic Regions (MAREANO) program. MAREANO is a multidisciplinary seabed mapping program conducting physical, biological, and environmental mapping in the Lofoten/southern Barents Sea area. Data and analysis arising from this program will provide the basis for ecosystem-based management of Norway's coastal and offshore regions. The survey used multicorer, box corer, and grab samplers; a TOPAS parametric subbottom profiler; 18-, 38-, 70-, 120-, 200-, and 400-kilohertz echo sounders; and a CAMPOD camera system with two video cameras and lights mounted on an aluminum frame.

  8. Problem-Solving Test: Southwestern Blotting

    ERIC Educational Resources Information Center

    Szeberényi, József

    2014-01-01

    Terms to be familiar with before you start to solve the test: Southern blotting, Western blotting, restriction endonucleases, agarose gel electrophoresis, nitrocellulose filter, molecular hybridization, polyacrylamide gel electrophoresis, proto-oncogene, c-abl, Src-homology domains, tyrosine protein kinase, nuclear localization signal, cDNA,…

  9. Hydrothermal and tectonic activity in northern Yellowstone Lake, Wyoming

    USGS Publications Warehouse

    Johnson, S.Y.; Stephenson, W.J.; Morgan, L.A.; Shanks, Wayne C.; Pierce, K.L.

    2003-01-01

    Yellowstone National Park is the site of one of the world's largest calderas. The abundance of geothermal and tectonic activity in and around the caldera, including historic uplift and subsidence, makes it necessary to understand active geologic processes and their associated hazards. To that end, we here use an extensive grid of high-resolution seismic reflection profiles (???450 km) to document hydrothermal and tectonic features and deposits in northern Yellowstone Lake. Sublacustrine geothermal features in northern Yellowstone Lake include two of the largest known hydrothermal explosion craters, Mary Bay and Elliott's. Mary Bay explosion breccia is distributed uniformly around the crater, whereas Elliott's crater breccia has an asymmetric distribution and forms a distinctive, ???2-km-long, hummocky lobe on the lake floor. Hydrothermal vents and low-relief domes are abundant on the lake floor; their greatest abundance is in and near explosion craters and along linear fissures. Domed areas on the lake floor that are relatively unbreached (by vents) are considered the most likely sites of future large hydrothermal explosions. Four submerged shoreline terraces along the margins of northern Yellowstone Lake add to the Holocene record or postglacial lake-level fluctuations attributed to "heavy breathing" of the Yellowstone magma reservoir and associated geothermal system. The Lake Hotel fault cuts through northwestern Yellowstone Lake and represents part of a 25-km-long distributed extensional deformation zone. Three postglacial ruptures indicate a slip rate of ???0.27 to 0.34 mm/yr. The largest (3.0 m slip) and most recent event occurred in the past ???2100 yr. Although high heat flow in the crust limits the rupture area of this fault zone, future earthquakes of magnitude ???5.3 to 6.5 are possible. Earthquakes and hydrothermal explosions have probably triggered landslides, common features around the lake margins. Few high-resolution seismic reflection surveys have

  10. Evidence against Late Quaternary activity along the Northern Karakoram Fault

    NASA Astrophysics Data System (ADS)

    Robinson, A. C.; Owen, L. A.; Hedrick, K.; Blisniuk, K.; Sharp, W. D.; Chen, J.; Schoenbohm, L. M.; Imrecke, D. B.; Yuan, Z.; Li, W.

    2012-12-01

    Although the entire 1000 km long Karakoram fault has long been interpreted to be active, recent work based primarily on interpretation of satellite imagery suggests that the northern end of the fault, where it enters the Pamir mountains, is inactive. We present field observations and geochronologic data from the southern end of the Tashkurgan valley, in the Pamir, on the Karakoram fault where it splits into two identifiable strands; an eastern strand which is the main trace of the Karakoram fault, and a western strand called the Achiehkopai fault. These results support the interpretation that the northern Karakoram fault is currently inactive, and has been for at least 200 ka: 1) Near the village of Dabudaer in the southern Tashkurgan valley the main trace of the Karakoram fault is orthogonally cut by a narrow incised valley with no observed lateral offset across the fault. Within this valley, a strath terrace ~50 m above the active drainage which overlies the main trace of the Karakoram fault which is capped by a carbonate cemented conglomerate. U-series analyses of carbonate cement from a correlative deposit located several km away yields a minimum depositional age of 76±12 ka. This age is coeval with the local Tashkurgan glacial stage we dated using Be-10 surface exposure dating (66±10 ka; Owen et al., 2012, Quaternary Science Reviews) suggesting both the conglomerate and strath terrace formed during this glacial stage. 2) ~25 km south of Dabudar, the main trace of the Karakoram projects beneath Tashkurgan glacial stage moraine and fluvial-glacial deposits which similarly show no evidence of disturbance by strike-slip deformation. Both of the above results demonstrate the main trace of the Karakoram fault has been inactive since at least ~70 ka. 3) Both the Karakoram and Achiehkopai faults are overlain by older Dabudaer glacial stage moraine deposits which are interpreted to be at least as old as the penultimate glacial, but may be >200 ka based on our Be-10

  11. 2000 years of human activity in Tuchola Pinewoods (northern Poland)

    NASA Astrophysics Data System (ADS)

    Obremska, Milena; Ott, Florian; Słowiński, Michał; Lutyńska, Monika; Błaszkiewicz, Mirosław; Brauer, Achim

    2014-05-01

    During the last two millennia human activity and their settlements together with varying climate conditions strongly influenced landscape scale changes. Especially within palaeoecological records these environmental responses are well expressed. However, a robust age control is needed for the evaluation and interpretation of biotic proxies.We present a record from the annually laminated (varved) sediments of Lake Czechowskie, located in northern Poland. The investigated record covers the past 2000 years and demonstrates the continuous vegetation history and human activity in the Northern part of the Tuchola Pinewoods. The chronology was established by varve counting and confirmed by AMS 14C dating, 137Cs activity measurement and a tephra layer (Askja 1875). We used high-resolution biotic (pollen, green algae and diatom analysis) sedimentological (varve and sublayer thickness variations) and geochemical (µ-XRF data) proxies to reconstruct the environmental changes within a time of increasing human activity and fluctuating climatic conditions. Based on different spatial sampling and measuring increments the temporal resolution varies between subseasonal (µ-XRF), annual (varves) up to five-varveresolution (biotic proxies) making it possible to trace even short lasting local and regional changes. Our results display visible human pressure in this area between 50- 350 yr. AD (Roman Period) exerted by tribes related to the Wielbark Culture. The development of persisting settlements and agriculture took place at expense of surrounding hornbeam forests. An intensification of lake productivity (expressed as an increase of varve thickness) started after 250 AD. If this lake ecosystem response relates to an intensified agriculture (and a possible transport of nutrients from neighboring rural lands) or to a climate shift will be further discussed. The rapid decline of human indicators about 350 years AD at the transition to the migration period might be related to cooler

  12. Streamlined Strategies to Better Visualize Southern Blotting

    ERIC Educational Resources Information Center

    Dean, Derek M.

    2012-01-01

    In this article, I describe an animated slideshow of Southern blotting that I have made freely available to other instructors. My hope is to provide a clear visualization of the logistics behind the technique so that instructors have a solid basis--as well as time freed up--to discuss its applications with students.

  13. Single cell-resolution western blotting.

    PubMed

    Kang, Chi-Chih; Yamauchi, Kevin A; Vlassakis, Julea; Sinkala, Elly; Duncombe, Todd A; Herr, Amy E

    2016-08-01

    This protocol describes how to perform western blotting on individual cells to measure cell-to-cell variation in protein expression levels and protein state. Like conventional western blotting, single-cell western blotting (scWB) is particularly useful for protein targets that lack selective antibodies (e.g., isoforms) and in cases in which background signal from intact cells is confounding. scWB is performed on a microdevice that comprises an array of microwells molded in a thin layer of a polyacrylamide gel (PAG). The gel layer functions as both a molecular sieving matrix during PAGE and a blotting scaffold during immunoprobing. scWB involves five main stages: (i) gravity settling of cells into microwells; (ii) chemical lysis of cells in each microwell; (iii) PAGE of each single-cell lysate; (iv) exposure of the gel to UV light to blot (immobilize) proteins to the gel matrix; and (v) in-gel immunoprobing of immobilized proteins. Multiplexing can be achieved by probing with antibody cocktails and using antibody stripping/reprobing techniques, enabling detection of 10+ proteins in each cell. We also describe microdevice fabrication for both uniform and pore-gradient microgels. To extend in-gel immunoprobing to gels of small pore size, we describe an optional gel de-cross-linking protocol for more effective introduction of antibodies into the gel layer. Once the microdevice has been fabricated, the assay can be completed in 4-6 h by microfluidic novices and it generates high-selectivity, multiplexed data from single cells. The technique is relevant when direct measurement of proteins in single cells is needed, with applications spanning the fundamental biosciences to applied biomedicine. PMID:27466711

  14. Multiplexed Western Blotting Using Microchip Electrophoresis.

    PubMed

    Jin, Shi; Furtaw, Michael D; Chen, Huaxian; Lamb, Don T; Ferguson, Stephen A; Arvin, Natalie E; Dawod, Mohamed; Kennedy, Robert T

    2016-07-01

    Western blotting is a commonly used protein assay that combines the selectivity of electrophoretic separation and immunoassay. The technique is limited by long time, manual operation with mediocre reproducibility, and large sample consumption, typically 10-20 μg per assay. Western blots are also usually used to measure only one protein per assay with an additional housekeeping protein for normalization. Measurement of multiple proteins is possible; however, it requires stripping membranes of antibody and then reprobing with a second antibody. Miniaturized alternatives to Western blot based on microfluidic or capillary electrophoresis have been developed that enable higher-throughput, automation, and greater mass sensitivity. In one approach, proteins are separated by electrophoresis on a microchip that is dragged along a polyvinylidene fluoride membrane so that as proteins exit the chip they are captured on the membrane for immunoassay. In this work, we improve this method to allow multiplexed protein detection. Multiple injections made from the same sample can be deposited in separate tracks so that each is probed with a different antibody. To further enhance multiplexing capability, the electrophoresis channel dimensions were optimized for resolution while keeping separation and blotting times to less than 8 min. Using a 15 μm deep × 50 μm wide × 8.6 cm long channel, it is possible to achieve baseline resolution of proteins that differ by 5% in molecular weight, e.g., ERK1 (44 kDa) from ERK2 (42 kDa). This resolution allows similar proteins detected by cross-reactive antibodies in a single track. We demonstrate detection of 11 proteins from 9 injections from a single Jurkat cell lysate sample consisting of 400 ng of total protein using this procedure. Thus, multiplexed Western blots are possible without cumbersome stripping and reprobing steps. PMID:27270033

  15. BLOT II Ver.1.39

    SciTech Connect

    2003-06-03

    BLOT II is a graphic program for post-processing finite element analyses output in the EXODUS II database format. It is command driven with free-format input and can drive graphics devices supported by the Sandia Virtual Device Interface. BLOT produces mesh plots of the analysis output variables including deformed mesh plots, line contours, filled (painted) contours, vector plots of two/three variables (velocity vectors), and symbol plots of scalar variables (discrete cracks). Features include pathlines of analysis variables drawn on the mesh, element selection by material, element birth and death, multiple views combining several displays on each plot, symmetry mirroring, and node and element numbering. X-Y plots of the analysis variables include time vs. variable plots or variable vs. variable plots, and distance vs. variable plots at selected time stips where distance is the accumulated distance between pairs of nodes or element centers.

  16. BLOT II Ver.1.39

    2003-06-03

    BLOT II is a graphic program for post-processing finite element analyses output in the EXODUS II database format. It is command driven with free-format input and can drive graphics devices supported by the Sandia Virtual Device Interface. BLOT produces mesh plots of the analysis output variables including deformed mesh plots, line contours, filled (painted) contours, vector plots of two/three variables (velocity vectors), and symbol plots of scalar variables (discrete cracks). Features include pathlines of analysismore » variables drawn on the mesh, element selection by material, element birth and death, multiple views combining several displays on each plot, symmetry mirroring, and node and element numbering. X-Y plots of the analysis variables include time vs. variable plots or variable vs. variable plots, and distance vs. variable plots at selected time stips where distance is the accumulated distance between pairs of nodes or element centers.« less

  17. Two-dimensional southwestern blotting and characterization of transcription factors on-blot.

    PubMed

    Jiang, Daifeng; Jia, Yinshan; Zhou, YanWen; Jarrett, Harry W

    2009-07-01

    Two-dimensional Southwestern blotting (2D-SW) described here combines several steps. Proteins are separated by two-dimensional gel electrophoresis and transferred to nitrocellulose (NC) or polyvinylidene fluoride (PVDF) membrane. The blotted proteins are then partially renatured and probed with a specific radiolabeled oligonucleotide for Southwestern blotting (SW) analysis. The detected proteins are then processed by on-blot digestion and identified by LC-MS/MS analysis. A transcription factor, bound by a specific radiolabeled element, is thus characterized without aligning with protein spots on a gel. In this study, we systematically optimize conditions for 2D-SW and on-blot digestion. By quantifying the SW signal using a scintillation counter, the optimal conditions for SW were determined to be PVDF membrane, 0.5% PVP40 for membrane blocking, serial dilution of guanidine HCl for denaturing and renaturing proteins on the blot, and an SDS stripping buffer to remove radiation from the blot. By the quantification of the peptide yields using nano-ESI-MS analysis, the optimized conditions for on-blot digestions were found to be 0.5% Zwittergent 3-16 and 30% acetonitrile in trypsin digestion buffer. With the use of the optimized 2D-SW technique and on-blot digestion combined with HPLC-nano-ESI-MS/MS, a GFP-C/EBP model protein was successfully characterized from a bacterial extract, and native C/EBP beta was identified from 100 microg of HEK293 nuclear extract without any previous purification. PMID:19388704

  18. Women's income generation activities in Merowe Province, Northern State, Sudan.

    PubMed

    Pitamber, S; Osama, S

    1994-06-01

    Merowe province in rural northern Sudan has been divided into three local government council areas: Merowe, Karima, and Ed Debba. A government program was instituted to increase the welfare of residents and food production. A baseline survey of 490 respondents was conducted in order to ascertain how illiterate women viewed development in the area and to provide useful information for program design and implementation. Women from 24 villages were administered questionnaires, observed in their daily activities, and engaged in discussion in a local meeting place. Discussions were also held with members of the local Popular Committee. Demographic information was very sketchy about age, and 48% had no formal education in writing and reading. General reading and writing skills of the remainder were very poor. There were 500 female children and 502 male children, and the sex ratio varied among the 3 council areas. 52% were married and 14% were divorced or widowed and living with relatives. The average monthly income was from Ls. 700 to Ls. 3000 based on reports from only 59.3% of respondents. Most of the women had skills in food processing and 25.7% were skilled in handicrafts. Water was obtained primarily from local wells and not decontaminated before use. Pit latrines were the standard. One bathing facility was available in the compound for the entire council area. Health units were either in each village or within 20-30 minutes walk. Child mortality was 4.3% in Merowe province. 77 children 0-5 years old died out of a total of 1002 live births. Life expectancy was 41-50 years for women and 61-70 years for men. Cleanliness and healthful eating were observed. 58% owned no land; plots were under 5 feddans and usually half a feddan. 92.1% had no bank account and 90% had no experience with loans. 70.2% were indifferent about involvement in an income generation program. 26% were interested in part-time participation. Only 3.9% desired full-time participation. 8.6% said they

  19. Distribution of activity at the solar active longitudes between 1979 - 2011 in the northern hemisphere

    NASA Astrophysics Data System (ADS)

    Gyenge, N.; Baranyi, T.; Ludmány, A.

    The solar active longitudes were studied in the northern hemisphere in cycles 22 and 23 by using data of DPD sunspot catalogue. The active longitudes are not fixed in the Carrington system, they have a well recognizable migration path between the descending phase of cycle 21 (from about 1984) and ascending phase of cycle 23 (until about 1996), out of this interval the migration path is ambiguous. The longitudinal distribution on both sides of the path has been computed and averaged for the length of the path. The so-called flip-flop phenomenon, when the activity temporarily gets to the opposite longitude, can also be recognized. The widths of the active domains are fairly narrow in the increasing and decaying phases of cycle 22, their half widths are about 20°-30° for both the main and secondary active belts but it is more flat and stretched around the maximum with a half width of about 60°.

  20. Western Blotting Inaccuracies with Unverified Antibodies: Need for a Western Blotting Minimal Reporting Standard (WBMRS)

    PubMed Central

    Gilda, Jennifer E.; Ghosh, Rajeshwary; Cheah, Jenice X.; West, Toni M.; Bodine, Sue C.; Gomes, Aldrin V.

    2015-01-01

    Western blotting is a commonly used technique in biological research. A major problem with Western blotting is not the method itself, but the use of poor quality antibodies as well as the use of different experimental conditions that affect the linearity and sensitivity of the Western blot. Investigation of some conditions that are commonly used and often modified in Western blotting, as well as some commercial antibodies, showed that published articles often fail to report critical parameters needed to reproduce the results. These parameters include the amount of protein loaded, the blocking solution and conditions used, the amount of primary and secondary antibodies used, the antibody incubation solutions, the detection method and the quantification method utilized. In the present study, comparison of ubiquitinated proteins in rat heart and liver samples showed different results depending on the antibody utilized. Validation of five commercial ubiquitin antibodies using purified ubiquitinated proteins, ubiquitin chains and free ubiquitin showed that these antibodies differ in their ability to detect free ubiquitin or ubiquitinated proteins. Investigating proteins modified with interferon-stimulated gene 15 (ISG15) in young and old rat hearts using six commercially available antibodies showed that most antibodies gave different semi-quantitative results, suggesting large variability among antibodies. Evidence showing the importance of the Western blot buffer and the concentration of antibody used is presented. Hence there is a critical need for comprehensive reporting of experimental conditions to improve the accuracy and reproducibility of Western blot analysis. A Western blotting minimal reporting standard (WBMRS) is suggested to improve the reproducibility of Western blot analysis. PMID:26287535

  1. The earliest record of human activity in northern Europe.

    PubMed

    Parfitt, Simon A; Barendregt, René W; Breda, Marzia; Candy, Ian; Collins, Matthew J; Coope, G Russell; Durbidge, Paul; Field, Mike H; Lee, Jonathan R; Lister, Adrian M; Mutch, Robert; Penkman, Kirsty E H; Preece, Richard C; Rose, James; Stringer, Christopher B; Symmons, Robert; Whittaker, John E; Wymer, John J; Stuart, Anthony J

    2005-12-15

    The colonization of Eurasia by early humans is a key event after their spread out of Africa, but the nature, timing and ecological context of the earliest human occupation of northwest Europe is uncertain and has been the subject of intense debate. The southern Caucasus was occupied about 1.8 million years (Myr) ago, whereas human remains from Atapuerca-TD6, Spain (more than 780 kyr ago) and Ceprano, Italy (about 800 kyr ago) show that early Homo had dispersed to the Mediterranean hinterland before the Brunhes-Matuyama magnetic polarity reversal (780 kyr ago). Until now, the earliest uncontested artefacts from northern Europe were much younger, suggesting that humans were unable to colonize northern latitudes until about 500 kyr ago. Here we report flint artefacts from the Cromer Forest-bed Formation at Pakefield (52 degrees N), Suffolk, UK, from an interglacial sequence yielding a diverse range of plant and animal fossils. Event and lithostratigraphy, palaeomagnetism, amino acid geochronology and biostratigraphy indicate that the artefacts date to the early part of the Brunhes Chron (about 700 kyr ago) and thus represent the earliest unequivocal evidence for human presence north of the Alps. PMID:16355223

  2. Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia

    NASA Astrophysics Data System (ADS)

    Drobyshev, Igor; Bergeron, Yves; Vernal, Anne De; Moberg, Anders; Ali, Adam A.; Niklasson, Mats

    2016-03-01

    Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone.

  3. Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia.

    PubMed

    Drobyshev, Igor; Bergeron, Yves; Vernal, Anne de; Moberg, Anders; Ali, Adam A; Niklasson, Mats

    2016-01-01

    Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone. PMID:26940995

  4. Atlantic SSTs control regime shifts in forest fire activity of Northern Scandinavia

    PubMed Central

    Drobyshev, Igor; Bergeron, Yves; Vernal, Anne de; Moberg, Anders; Ali, Adam A.; Niklasson, Mats

    2016-01-01

    Understanding the drivers of the boreal forest fire activity is challenging due to the complexity of the interactions driving fire regimes. We analyzed drivers of forest fire activity in Northern Scandinavia (above 60 N) by combining modern and proxy data over the Holocene. The results suggest that the cold climate in northern Scandinavia was generally characterized by dry conditions favourable to periods of regionally increased fire activity. We propose that the cold conditions over the northern North Atlantic, associated with low SSTs, expansion of sea ice cover, and the southward shift in the position of the subpolar gyre, redirect southward the precipitation over Scandinavia, associated with the westerlies. This dynamics strengthens high pressure systems over Scandinavia and results in increased regional fire activity. Our study reveals a previously undocumented teleconnection between large scale climate and ocean dynamics over the North Atlantic and regional boreal forest fire activity in Northern Scandinavia. Consistency of the pattern observed annually through millennium scales suggests that a strong link between Atlantic SST and fire activity on multiple temporal scales over the entire Holocene is relevant for understanding future fire activity across the European boreal zone. PMID:26940995

  5. Development of 23 Cycles Activity in Northern and Southern Hemispheres of the Sun

    NASA Astrophysics Data System (ADS)

    Ryabov, M. I.; Sukharev, A. L.; Lukashuk, S. A.

    On an example of the 23rd cycle of solar activity the basic properties of its development in northern and southern hemispheres were researched (daily values of Wolf Sunspot Number - W, the daily values of Sun spots areas - Sp and daily values of flare index - FI.) Effects of application of full-scale Wavelet analysis for studying the temporary structure of formation of a solar cycle show the difference in northern and southern hemispheres. The "leading" periods (in northern hemisphere - 340 days, and in southern hemisphere - 709 days) differ. Thus, the activity period in two years is predominate in southern hemisphere. The "leading" period for the flare index for northern hemisphere is 555 days, and for southern hemisphere is 709 days. In general the basic periods W in northern hemisphere are in the range of 37-555 days, and in southern - 78-906 days, SpN (61-906 days), SpS (61-1477 days), FIN (37-555 days), FIS (23-709 days), FIS - (14709 days) depending on the phase of solar cycle.

  6. 75 FR 57049 - Agency Information Collection Activities: Form I-777, Application for Replacement of Northern...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-17

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF HOMELAND SECURITY U.S. Citizenship and Immigration Services Agency Information Collection Activities: Form I-777, Application for Replacement of Northern Mariana Card ACTION: Correction to 30-day notice of Information Collection Under Review: Form...

  7. Evidence for late tertiary volcanic activity in the northern black hills, South dakota.

    PubMed

    Kirchner, J G

    1977-05-27

    Rhyolitic volcanic rock in the northern Black Hills has a potassium-argon isotopic age of 10.5 +/- 1.5 million years. This is considerably younger than any previously reported igneous activity in this or adjacent areas and indicates that the renewed uplift of the Black Hills, which occurred after the Oligocene epoch, was also accompanied by some volcanism. PMID:17778711

  8. Active deformation in the northern Sierra de Valle Fértil, Sierras Pampeanas, Argentina

    NASA Astrophysics Data System (ADS)

    Ortiz, Gustavo; Alvarado, Patricia; Fosdick, Julie C.; Perucca, Laura; Saez, Mauro; Venerdini, Agostina

    2015-12-01

    The Western Sierras Pampeanas region in the San Juan Province is characterized by thick-skinned deformation with approximately N-S trending ranges of average heights of 2500 m and a high frequency occurrence of seismic activity. Its location to the east of the mainly thin-skinned tectonics of the Argentine Precordillera fold-and-thrust belt suggests that at 30°S, deformation is concentrated in a narrow zone involving these two morphostructural units. In this paper, we present new apatite (U-Th)/He results (AHe) across the northern part of the Sierra de Valle Fértil (around 30°S) and analyze them in a framework of thermochronologic available datasets. We found Pliocene AHe results for Carboniferous and Triassic strata in the northern Sierra de Valle Fértil consistent with the hypothesis of recent cooling and inferred erosional denudation concentrated along the northern end of this mountain range. Our analysis shows that this northern region may have evolved under different conditions than the central part of the Sierra de Valle Fértil. Previous studies have observed AHe ages consistent with Permian through Cretaceous cooling, indicating the middle part of the Sierra de Valle Fértil remained near surface before the Pampean slab subduction flattening process. Those studies also obtained ˜5 My cooling ages in the southern part of the Sierra de Valle Fértil, which are similar to our results in the northern end of the range. Taken together, these results suggest a pattern of young deformation in the northern and southern low elevation ends of the Sierra de Valle Fértil consistent with regions of high seismic activity, and Quaternary active faulting along the western-bounding thrust fault of the Sierra de Valle Fértil.

  9. Regulation of Cytokinin Oxidase Activity in Callus Tissues of Phaseolus vulgaris L. cv Great Northern 1

    PubMed Central

    Chatfield, J. Mark; Armstrong, Donald J.

    1986-01-01

    The regulation of cytokinin oxidase activity in callus tissues of Phaseolus vulgaris L. cv Great Northern has been examined using an assay based on the oxidation of N6-(Δ2-isopentenyl)adenine-8-14C (i6 Ade-8-14C) to adenine. Solutions of exogenous cytokinins applied directly to the surface of the callus tissues induced relatively rapid increases in cytokinin oxidase activity. The increase in activity was detectable after 1 hour and continued for about 8 hours, reaching values two- to three-fold higher than the controls. The cytokinin-induced increase in cytokinin oxidase activity was inhibited in tissues pretreated with cordycepin or cycloheximide, suggesting that RNA and protein synthesis may be required for the response. Rifampicin and chloramphenicol, at concentrations that inhibited the growth of Great Northern callus tissues, were ineffective in inhibiting the increase in activity. All cytokinin-active compounds tested, including both substrates and nonsubstrates of cytokinin oxidase, were effective in inducing elevated levels of the enzyme in Great Northern callus tissue. The cytokinin-active urea derivative, Thidiazuron, was as effective as any adenine derivative in inducing this response. The addition of Thidiazuron to the reaction volumes used to assay cytokinin oxidase activity resulted in a marked inhibition of the degradation of the labeled i6 Ade-8-14C substrate. On the basis of this result, it is possible that Thidiazuron may serve as a substrate for cytokinin oxidase, but other mechanisms of inhibition have not yet been excluded. PMID:16664650

  10. Observations of the northern seasonal polar cap on Mars: I. Spring sublimation activity and processes

    NASA Astrophysics Data System (ADS)

    Hansen, C. J.; Byrne, S.; Portyankina, G.; Bourke, M.; Dundas, C.; McEwen, A.; Mellon, M.; Pommerol, A.; Thomas, N.

    2013-08-01

    Spring sublimation of the seasonal CO2 northern polar cap is a dynamic process in the current Mars climate. Phenomena include dark fans of dune material propelled out onto the seasonal ice layer, polygonal cracks in the seasonal ice, sand flow down slipfaces, and outbreaks of gas and sand around the dune margins. These phenomena are concentrated on the north polar erg that encircles the northern residual polar cap. The Mars Reconnaissance Orbiter has been in orbit for three Mars years, allowing us to observe three northern spring seasons. Activity is consistent with and well described by the Kieffer model of basal sublimation of the seasonal layer of ice applied originally in the southern hemisphere. Three typical weak spots have been identified on the dunes for escape of gas sublimed from the bottom of the seasonal ice layer: the crest of the dune, the interface of the dune with the interdune substrate, and through polygonal cracks in the ice. Pressurized gas flows through these vents and carries out material entrained from the dune. Furrows in the dunes channel gas to outbreak points and may be the northern equivalent of southern radially-organized channels ("araneiform" terrain), albeit not permanent. Properties of the seasonal CO2 ice layer are derived from timing of seasonal events such as when final sublimation occurs. Modification of dune morphology shows that landscape evolution is occurring on Mars today, driven by seasonal activity associated with sublimation of the seasonal CO2 polar cap.

  11. Observations of the northern seasonal polar cap on Mars: I. Spring sublimation activity and processes

    USGS Publications Warehouse

    Hansen, C.J.; Byrne, S.; Portyankina, G.; Bourke, M.; Dundas, C.; McEwen, A.; Mellon, M.; Pommerol, A.; Thomas, N.

    2013-01-01

    Spring sublimation of the seasonal CO2 northern polar cap is a dynamic process in the current Mars climate. Phenomena include dark fans of dune material propelled out onto the seasonal ice layer, polygonal cracks in the seasonal ice, sand flow down slipfaces, and outbreaks of gas and sand around the dune margins. These phenomena are concentrated on the north polar erg that encircles the northern residual polar cap. The Mars Reconnaissance Orbiter has been in orbit for three Mars years, allowing us to observe three northern spring seasons. Activity is consistent with and well described by the Kieffer model of basal sublimation of the seasonal layer of ice applied originally in the southern hemisphere. Three typical weak spots have been identified on the dunes for escape of gas sublimed from the bottom of the seasonal ice layer: the crest of the dune, the interface of the dune with the interdune substrate, and through polygonal cracks in the ice. Pressurized gas flows through these vents and carries out material entrained from the dune. Furrows in the dunes channel gas to outbreak points and may be the northern equivalent of southern radially-organized channels (“araneiform” terrain), albeit not permanent. Properties of the seasonal CO2 ice layer are derived from timing of seasonal events such as when final sublimation occurs. Modification of dune morphology shows that landscape evolution is occurring on Mars today, driven by seasonal activity associated with sublimation of the seasonal CO2 polar cap.

  12. Dynamics of the Thermal State of Active Layer at the Alaska North Slope and Northern Yakutia

    NASA Astrophysics Data System (ADS)

    Kholodov, A. L.; Romanovsky, V. E.; Marchenko, S.; Shiklomanov, N. I.; Fedorov-Davydov, D.

    2010-12-01

    Dynamics of the active layer is one of the most important indexes, reflecting permafrost response to the modern climate changes. Monitoring of active layer thickness dynamics is the main goal of CALM (Circumpolar Active Layer Monitoring) project. But, from different points of view, it is very important to know not only maximal depth of seasonal thawing but also dynamics of thermal field of active layer and duration of its staying in the unfrozen state. Current research was aimed on the analyzing data of temperature measurements have been done during the more then 10 years at the North Slope of Brooks Range (Alaska) and 2 years at the selected sites at the Northern Yakutia (Russia) and its comparison with the 17 to 10 years records of active layer thickness dynamics at the corresponding sites (http://www.udel.edu/Geography/calm/data/north.html). The area of investigation characterized by the typical tundra landscape and different kinds of micro topography. Reported observation sites located at the latitudinal range from 68.5 to 70.3N in Alaska and 70.5 to 71.75N in the Northern Yakutia. Observation have been done using the 1 meter long MRC probe with 11 sensors (every 10 cm) and single Campbell SCI A107 sensors in Alaska and 2-channel HOBO U23 data loggers with TMC-HD thermistors in the Northern Yakutia. Analyses of CALM data show what most observation sites in Alaska (except located near the Brooks Range and at the Arctic Ocean coast) do not subjected to the significant sustainable changes of active layer thickness over the last 10 years. At the same time active layer thickness at the Yakutian sites was increasing. Temperature observations show decreasing of the mean annual temperature at the average depth of active layer bottom at the Alaskan sites. But, because of general trend to increasing of period of thawing it does not lead to the decreasing of active layer thickness. Recent equipment deployment at the Tiksi and Allaikha sites (Northern Yakutia) does not

  13. BLOTS AND ALL: A HISTORY OF THE RORSCHACH INK BLOT TEST IN BRITAIN.

    PubMed

    Hubbard, Katherine; Hegarty, Peter

    2016-01-01

    Despite the easily recognizable nature of the Rorschach ink blot test very little is known about the history of the test in Britain. We attend to the oft-ignored history of the Rorschach test in Britain and compare it to its history in the US. Prior to the Second World War, Rorschach testing in Britain had attracted advocates and critiques. Afterward, the British Rorschach Forum, a network with a high proportion of women, developed around the Tavistock Institute in London and The Rorschach Newsletter. In 1968, the International Rorschach Congress was held in London but soon after the group became less exclusive, and fell into decline. A comparative account of the Rorschach in Britain demonstrates how different national institutions invested in the 'projective hypothesis' according to the influence of psychoanalysis, the adoption of a nationalized health system, and the social positioning of 'others' throughout the twentieth century. In comparing and contrasting the history of the Rorschach in Britain and the US, we decentralize and particularize the history of North American Psychology. PMID:26924673

  14. Active deformation processes of the Northern Caucasus deduced from the GPS observations

    NASA Astrophysics Data System (ADS)

    Milyukov, Vadim; Mironov, Alexey; Rogozhin, Eugeny; Steblov, Grigory; Gabsatarov, Yury

    2015-04-01

    The Northern Caucasus, as a part of the Alpine-Himalayan mobile belt, is a zone of complex tectonics associated with the interaction of the two major tectonic plates, Arabian and Eurasian. The first GPS study of the contemporary geodynamics of the Caucasus mountain system were launched in the early 1990s in the framework of the Russia-US joint project. Since 2005 observations of the modern tectonic motion of the Northern Caucasus are carried out using the continuous GPS network. This network encompasses the territory of three Northern Caucasian Republics of the Russian Federation: Karachay-Cherkessia, Kabardino-Balkaria, and North Ossetia. In the Ossetian part of the Northern Caucasus the network of GPS survey-mode sites has been deployed as well. The GPS velocities confirm weak general compression of the Northern Caucasus with at the rate of about 1-2 mm/year. This horizontal motion at the boundary of the Northern Caucasus with respect to the Eurasian plate causes the higher seismic and tectonic activity of this transition zone. This result confirms that the source of deformation of the Northern Caucasus is the sub-meridional drift of the Arabian plate towards the adjacent boundary of the Eastern European part of the Eurasian lithospheric plate. The concept of such convergence implies that the Caucasian segment of the Alpine-Himalayan mobile belt is under compression, the layers of sedimentary and volcanic rocks are folded, the basement blocks are subject to shifts in various directions, and the upper crust layers are ruptured by reverse faults and thrusts. Weak deviation of observed velocities from the pattern corresponding to homogeneous compression can also be revealed, and numerical modeling of deformations of major regional tectonic structures, such as the Main Caucasus Ridge, can explain this. The deformation tensor deduced from the velocity field also exhibits the sub-meridional direction of the major compressional axes which coincides with the direction of

  15. Nocturnal activity of a "diurnal" species, the northern chamois, in a predator-free Alpine area.

    PubMed

    Carnevali, Lucilla; Lovari, Sandro; Monaco, Andrea; Mori, Emiliano

    2016-05-01

    The reduction of predation risk is widely considered a major factor affecting the nocturnal activity of mammals. Furthermore, on precipitous mountain terrain, moving in very poor light conditions should be avoided by animals with no special eyesight adaptation to darkness. The Northern chamois Rupicapra rupicapra has been for long considered as a diurnal species, with occasional nocturnal movements. For the first time, we have quantified the nocturnal activity of 21 radiotagged female chamois from the Italian Eastern Alps (Paneveggio-Pale di San Martino Natural Park), continuously monitored for two years from sunset to sunrise, with 24h tracking sessions carried out for six months. Large predators were not present in the study site. Despite their mainly diurnal activity pattern, peaks of nocturnal movements were detected throughout the year. The least proportion of active night fixes occurred in January and in July, while the most were in April and in October. The greater nocturnal activity in the warm months compared to cold periods, was probably due to frozen snow cover reducing nocturnal movements. Movements were mainly concentrated in bright moonlight nights, possibly because of the absence of large predators, but more likely because of increased visibility. Changes in activity levels throughout the year may also reflect changes in energy requirements of Northern chamois. PMID:27012888

  16. Active diapirism and slope steepening, northern Gulf of Mexico continental slope.

    USGS Publications Warehouse

    Martin, R.G.; Bouma, A.H.

    1982-01-01

    Large diapiric and nondiapiric masses of Jurassic salt and Tertiary shale underlie the northern Gulf of Mexico continental slope and adjacent outer continental shelf. Local steepening of the sea floor in response to the vertical growth of these structures is a serious concern to those involved in the site selection and the construction of future oil and gas production and transportation facilities in this frontier petroleum province. The evidence given in this paper supports the conclusion that the present continental slope region of the northern Gulf of Mexico is undergoing active diapirism and consequent slope steepening. Because most of the sediment on the flanks of diapiric structures consists of underconsolidated muds, slumping will take place regularly in response to further diapiric movement.-from Authors

  17. Fault zone structure and inferences on past activities of the active Shanchiao Fault in the Taipei metropolis, northern Taiwan

    NASA Astrophysics Data System (ADS)

    Chen, C.; Lee, J.; Chan, Y.; Lu, C.

    2010-12-01

    The Taipei Metropolis, home to around 10 million people, is subject to seismic hazard originated from not only distant faults or sources scattered throughout the Taiwan region, but also active fault lain directly underneath. Northern Taiwan including the Taipei region is currently affected by post-orogenic (Penglai arc-continent collision) processes related to backarc extension of the Ryukyu subduction system. The Shanchiao Fault, an active normal fault outcropping along the western boundary of the Taipei Basin and dipping to the east, is investigated here for its subsurface structure and activities. Boreholes records in the central portion of the fault were analyzed to document the stacking of post- Last Glacial Maximum growth sediments, and a tulip flower structure is illuminated with averaged vertical slip rate of about 3 mm/yr. Similar fault zone architecture and post-LGM tectonic subsidence rate is also found in the northern portion of the fault. A correlation between geomorphology and structural geology in the Shanchiao Fault zone demonstrates an array of subtle geomorphic scarps corresponds to the branch fault while the surface trace of the main fault seems to be completely erased by erosion and sedimentation. Such constraints and knowledge are crucial in earthquake hazard evaluation and mitigation in the Taipei Metropolis, and in understanding the kinematics of transtensional tectonics in northern Taiwan. Schematic 3D diagram of the fault zone in the central portion of the Shanchiao Fault, displaying regional subsurface geology and its relation to topographic features.

  18. A population-based study of active and drug-resistant epilepsies in Northern Italy.

    PubMed

    Giussani, Giorgia; Canelli, Valentina; Bianchi, Elisa; Franchi, Carlotta; Nobili, Alessandro; Erba, Giuseppe; Beghi, Ettore

    2016-02-01

    Drug-resistant epilepsy (DRE) is defined by the International League Against Epilepsy as a failure of adequate trials of two tolerated, appropriately chosen, and used antiepileptic drugs to achieve sustained seizure freedom. Our aim was to calculate the following: (1) the prevalence of active epilepsy and DRE in a well-defined population of Northern Italy and (2) the proportion of incident cases developing DRE. The study population (146,506; year 2008) resided in the province of Lecco, Northern Italy. The medical records of 123 general practitioners were reviewed to identify patients with epilepsy, diagnosed by a neurologist during the period 2000-2008. The point prevalence of active epilepsy and DRE was calculated on December 31, 2008. A total of 747 prevalent patients with epilepsy, 684 patients with active epilepsy, and 342 incident cases were identified. The frequency of DRE was 15.6% (107/684) of all active epilepsies and 10.5% (36/342) of incident cases. The point prevalence was 0.73 per 1000. The standardized prevalence of DRE was 0.7 per 1000 (Italian population) and 0.8 per 1000 (world population). Our data indicate that 1/6 patients with active epilepsy in the general population has DRE, and 1/10 patients with newly diagnosed epilepsy will develop DRE within nine years from the diagnosis. PMID:26731716

  19. An automated rotisserie system for processing Western blots.

    PubMed

    Ma, P W K

    2002-01-01

    An apparatus to automate completely the processing of Western blots is described. The prototype is based on a popular rotisserie system design. The incubation chamber consists of an inner cylinder that rotates inside an outer cylinder (incubation chamber). The blot is contained in the inner cylinder. Two magnets are mounted at one end of the inner cylinder, and rotation of the inner cylinder is effected by two magnets mounted on a motor drive outside the incubation chamber. Movement of chemicals into and out of the incubation chamber is driven pneumatically, and the entire process is controlled by a computer. Processing a blot for chemiluminescent detection takes 7 h to complete without human intervention. The quality of the resulting image is comparable to or better than a blot using manual processing. In addition, the prototype is capable of re-collecting all three antisera for future use. PMID:12564602

  20. Quantitative autoradiography of dot blots using a microwell densitometer

    SciTech Connect

    Ross, P.M.; Woodley, K.; Baird, M. )

    1989-07-01

    We have established conditions for the quantitation of DNA hybridization by reading dot blot autoradiographs with a microwell plate densitometer. This method is more convenient, as accurate, and more sensitive than counting the spots in a liquid scintillation counter.

  1. IDENTIFICATION OF IMMUNOGENS OF 'MYCOPLASMA PNEUMONIAE' BY PROTEIN BLOTTING

    EPA Science Inventory

    Proteins of Mycoplasma pneumoniae were separated by SDS-polyacrylamide gel electrophoresis and transferred to a nitrocellulose sheet by blotting. Sera obtained from infected hamsters and immunized rabbits were then incubated with the nitrocellulose strips. Proteins which are capa...

  2. Active deformation of the northern front of the Eastern Great Caucasus

    NASA Astrophysics Data System (ADS)

    Niviere, Bertrand; Gagala, Lukasz; Callot, Jean-Paul; Regard, Vincent; Ringenbach, Jean-Claude

    2016-04-01

    The Arabia-Eurasia collision involved a mosaic of island arcs and microcontinents. Their accretion to the complex paleogeographic margin of Neotethys was marked by numerous collisional events. The Greater Caucasus constitute the northernmost tectonic element of this tectonic collage, developed as a back arc extensional zone now inverted, which relationships to the onset of Arabia-Eurasia continental collision and/or to the reorganization of the Arabia-Eurasia plate boundary at ˜5 Ma remain controversial. Structurally, the Greater Caucasus are a former continental back arc rift, now the locus of ongoing continental shortening. Modern geodetic observations suggest that in the west, the strain north of the Armenian Plateau is accommodated almost exclusively along the margins of the Greater Caucasus. This differs from regions further east where strain accommodation is distributed across both the Lesser and Greater Caucasus, and within the Greater Caucasus range, with a unique southward vergence. We question here the amount and mechanisms by which the Eastern Greater Caucasus accommodate part of the Arabia-Eurasia convergence. Morphostructural analysis of the folded late Pleistocene marine terrace along the northern slope of the Eastern Greater Caucasus evidences an on going tectonic activity in the area where GPS measurements record no motion. Most of the recent foreland deformation is accommodated by south-vergent folds and thrust, i. e. opposite to the vergence of the Caucasus frontal northern thrust. A progressive unconformity in the folded beds shows that it was already active during the late Pliocene. Cosmogenic dating of the terrace and kinematic restoration of the remnant terrace, linked to the subsurface geology allows for the estimation of a shortening rate ranging from a few mm/yr to 1 cm/yr over the last 5 Myr along the greater Caucasus northern front. Thus more than one third of the shortening between the Kura block / Lesser Caucasus domain and the Stable

  3. Numerical simulation of coastal flooding after potential reactivation of an active normal fault in northern Taiwan

    NASA Astrophysics Data System (ADS)

    Chan, Yu-Chang; Kuo, Chih-Yu; Chang, Kuo-Jen; Chen, Rou-Fei; Hsieh, Yu-Chung

    2016-04-01

    Rapid coastal flooding from seawards may be resulted from storm surge, tsunamis, and sudden land subsidence due to fault activities. Many observations and numerical modeling of flooding have been made for cases resulted from storm surge and tsunami events; however, coastal flooding caused by a potential normal faulting event nearby coastal areas is rarely reported. In addition to the earthquake hazards from fault rupturing and ground shaking, the accompanied hazards of earthquake-induced flooding is also important to be investigated. The Jinshan area in northern Taiwan was reported to have been flooded by a tsunami event in the year of 1867 possibly resulted from the reactivation of the Shanchiao normal fault offshore. Historical records have shown that the Shanchiao Fault that extends from Shulin along the western edge of the Taipei Basin to the town of Jinshan may have also ruptured in the year of 1694. The rupturing event has created a depression on the western side of the Taipei Basin that was later filled by sea water called the Taipei Lake. The geological conditions in northern Taiwan provide an opportunity for numerically simulating the dynamic processes of sea water flooding nearby the coastal area immediately after an earthquake-induced normal faulting event. In this study, we focused on the potential active normal faulting that may occur and result in an expected catastrophic flooding in lowland area of Jinshan in northern Taiwan. We applied the continuum shallow water equation to evaluate the unknown inundation processes including location, extent, velocity and water depths after the flooding initiated and the final state of the flooding event. The modeling results were well compared with borehole observations of the extent of previous flooding events possibly due to tsunami events. In addition, the modeling results may provide a future basis for safety evaluation of the two nuclear power plants nearby the region.

  4. Lightning-produced NOx during the Northern Australian monsoon; results from the ACTIVE campaign

    NASA Astrophysics Data System (ADS)

    Labrador, L.; Vaughan, G.; Heyes, W.; Waddicor, D.; Volz-Thomas, A.; Pätz, H.-W.; Höller, H.

    2009-10-01

    Measurements of nitrogen oxides onboard a high altitude aircraft were carried out for the first time during the Northern Australian monsoon in the framework of the Aerosol and Chemical Transport in Tropical Convection (ACTIVE) campaign, in the area around Darwin, Australia. During one flight on 22 January 2006, average NOx volume mixing ratios (vmr) of 984 and 723 parts per trillion (ppt) were recorded for both in and out of cloud conditions, respectively. The in-cloud measurements were made in the convective outflow region of a storm 56 km south-west of Darwin, whereas those out of cloud were made due south of Darwin and upwind from the storm sampled. This storm produced a total of only 8 lightning strokes, as detected by an in-situ lightning detection network, ruling out significant lightning-NOx production. 5-day backward trajectories suggest that the sampled airmasses had travelled over convectively-active land in Northern Australia during that period. The low stroke count of the sampled storm, along with the high out-of-cloud NOx concentration, suggest that, in the absence of other major NOx sources during the monsoon season, a combination of processes including regional transport patterns, convective vertical transport and entrainment may lead to accumulation of lightning-produced NOx, a situation that contrasts with the pre-monsoon period in Northern Australia, where the high NOx values occur mainly in or in the vicinity of storms. These high NOx concentrations may help start ozone photochemistry and OH radical production in an otherwise NOx-limited environment.

  5. Lightning-produced NOx during the Northern Australian monsoon; results from the ACTIVE campaign

    NASA Astrophysics Data System (ADS)

    Labrador, L.; Vaughan, G.; Heyes, W.; Waddicor, D.; Volz-Thomas, A.; Pätz, H.-W.; Höller, H.

    2009-05-01

    Measurements of nitrogen oxides onboard a high altitude aircraft were carried out for the first time during the Northern Australian monsoon in the framework of the Aerosol and Chemical Transport in Tropical Convection (ACTIVE) campaign, in the area around Darwin, Australia. During one flight on 22 January 2006, average NOx mixing ratios (mrs) of 723 and 984 parts per trillion volume (pptv) were recorded for both in and out of cloud conditions, respectively. The in-cloud measurements were made in the convective outflow region of a storm 56 km south-west of Darwin, whereas those out of cloud were made due south of Darwin and upwind from the storm sampled. This storm produced a total of only 8 lightning strokes, as detected by an in-situ lightning detection network, ruling out significant lightning-NOx production. 5-day backward trajectories suggest that the sampled airmasses had travelled over convectively-active land in Northern Australia during that period. The low stroke count of the sampled storm, along with the high out-of-cloud NOx concentration, suggest that, in the absence of other major NOx sources during the monsoon season, a combination of processes including regional transport patterns, convective vertical transport and entrainment may lead to accretion of lightning-produced NOx, a situation that contrasts with the pre-monsoon period in Northern Australia, where the high NOx values occur mainly in or in the vicinity of storms. These high NOx concentrations may help start ozone photochemistry and OH radical production in an otherwise NOx-limited environment.

  6. Western Blot of Stained Proteins from Dried Polyacrylamide Gels

    NASA Technical Reports Server (NTRS)

    Gruber, Claudia; Stan-Lotter, Helga

    1996-01-01

    Western blotting of proteins is customarily performed following their separation on polyacrylamide gels, either prior to staining (1) or, as recently reported, following staining (2). We describe here Western blotting with stained gels, which had been dried and some of which had been stored for years. This procedure permits immunological analysis of proteins, to which antisera may have become available only later, or where the application of newly developed sensitive detection methods is desired. Once rehydration of the gels is achieved, proteins can be-transferred to blotting membranes by any appropriate protocol. Proteins stained with Coomassie Blue have to be detected with a non-chromogenic method, such as the film-based enhanced chemiluminescence (ECL)2) procedure (3). Silver stained proteins, which transfer in the colorless form, may be visualized by any detection method, although, because of the usually very low amounts of proteins, detection by ECL is preferable. Blotting of stained proteins from rehydrated gels is as rapid and as quantitative as from freshly prepared gels, in contrast to blotting from wet stained gels, which requires extensive washing and results in low transfer efficiency (2). Together with a photographic record of the gel pattern, unambiguous identification of immunoreactive proteins from complex mixtures is possible. Some further applications of this work are discussed.

  7. Genetic relatedness of orbiviruses by RNA-RNA blot hybridization

    SciTech Connect

    Bodkin, D.K.

    1985-01-01

    RNA-RNA blot hybridization was developed in order to identify type-specific genes among double-stranded (ds) RNA viruses, to assess the genetic relatedness of dsRNA viruses and to classify new strains. Viral dsRNA segments were electrophoresed through 10% polyacrylamide gels, transferred to membranes, and hybridized to (5'/sup 32/P)-pCp labeled genomic RNA from a related strain. Hybridization was performed at 52/sup 0/C, 50% formamide, 5X SSC. Under these conditions heterologous RNA species must share greater than or equal to 74% sequence homology in order to form stable dsRNA hybrids. Cognate genes of nine members of the Palyam serogroup of orbiviruses were identified and their sequence relatedness to the prototype. Palyam virus, was determined. Reciprocal blot hybridizations were performed using radiolabeled genomic RNA of all members of the Palyam serogroup. Unique and variant genes were identified by lack of cross-homology or by weak homology between segments. Since genes 2 and 6 exhibited the highest degree of sequence variability, response to the vertebrate immune system may be a major cause of sequence divergence among members of a single serogroup. Changuinola serogroup isolates were compared by dot-blot hybridization, while Colorado tick fever (CTF) serogroup isolates were compared by the RNA-RNA blot hybridization procedure described for reovirus and Palyam serogroup isolates. Preliminary blot hybridization data were also obtained on the relatedness of members of different Orbivirus serogroups.

  8. Stratigraphic evidence for late Quaternary dune activity near Hudson on the Piedmont of northern Colorado

    SciTech Connect

    Forman, S.L.; Maat, P. )

    1990-08-01

    Stabilized dune fields are common features near Hudson, on the Piedmont of northern Colorado. Exposures in dune and interdune sites expose a sequence of eolian sediments and paleosols that record a complex history of eolian activity during the late Quaternary. Radiocarbon and thermoluminescence age estimates on A horizons buried by eolian sand indicate that dunes were reactivated sometime between 7 and 9 ka. On the basis of morphology of surface soils, the dunes were most recently stabilized <3 ka. At present that are no data to indicate if there were multiple periods of dune movement and stabilization during the Holocene. The penultimate pre-Holocene dune-forming episode probably terminated ca. 13 ka and may be coincident with the Pinedale glaciation. The stratigraphy at interdune sites shows at least two eolian depositional events prior to the penultimate event; they were separated by periods of pedogenesis, one of which may have exceeded 40 ka. This analysis indicates that dunes in northern Colorado were active during both cold-arid and warn-arid periods in the late Quaternary.

  9. HTLV-I/II seroindeterminate Western blot reactivity in a cohort of patients with neurological disease.

    PubMed

    Soldan, S S; Graf, M D; Waziri, A; Flerlage, A N; Robinson, S M; Kawanishi, T; Leist, T P; Lehky, T J; Levin, M C; Jacobson, S

    1999-09-01

    The human T-cell lymphotropic virus type I (HTLV-I) is associated with a chronic, progressive neurological disease known as HTLV-I-associated myelopathy/tropical spastic paraparesis. Screening for HTLV-I involves the detection of virus-specific serum antibodies by EIA and confirmation by Western blot. HTLV-I/II seroindeterminate Western blot patterns have been described worldwide. However, the significance of this blot pattern is unclear. We identified 8 patients with neurological disease and an HTLV-I/II seroindeterminate Western blot pattern, none of whom demonstrated increased spontaneous proliferation and HTLV-I-specific cytotoxic T lymphocyte activity. However, HTLV-I tax sequence was amplified from the peripheral blood lymphocytes of 4 of them. These data suggest that patients with chronic progressive neurological disease and HTLV-I/II Western blot seroindeterminate reactivity may harbor either defective HTLV-I, novel retrovirus with partial homology to HTLV-I, or HTLV-I in low copy number. PMID:10438355

  10. Improved semiquantitative Western blot technique with increased quantification range.

    PubMed

    Heidebrecht, F; Heidebrecht, A; Schulz, I; Behrens, S-E; Bader, A

    2009-06-30

    With the development of new interdisciplinary fields such as systems biology, the quantitative analysis of protein expression in biological samples gains more and more importance. Although the most common method for this is ELISA, Western blot also has advantages: The separation of proteins by size allows the evaluation of only specifically bound protein. This work examines the Western blot signal chain, determines some of the parameters relevant for quantitative analysis and proposes a mathematical model of the reaction kinetics. Using this model, a semiquantitative Western blot method for simultaneous quantification of different proteins using a hyperbolic calibration curve was developed. A program was written for the purpose of hyperbolic regression that allows quick determination of the calibration curve coefficients. This program can be used also for approximation of calibration curves in other applications such as ELISA, BCA or Bradford assays. PMID:19351538

  11. Detection of Blotted Proteins: Not All Blockers Are Created Equal.

    PubMed

    Kothari, Vishal; Mathews, Suresh T

    2015-01-01

    Western blotting is a standard analytical technique for detection of proteins. It is dependent on a number of components; from the specificity of the primary antibody to the reduction of competing biomolecules present in the assay. Blocking agents are a critical component for western blotting protocols as these diminish nonspecific binding by blocking off-target sites on the membrane. A variety of blocking agents are available and these are selected in an empirical manner, as no single blocker is compatible with every system. The best blocking agent and method for any particular assay will be an optimized but not absolute choice. Here, we describe characteristics of the most common blocking agents used in western blotting and discuss their advantages and disadvantages. PMID:26139251

  12. Permian to late Cenozoic evolution of northern Patagonia: Main tectonic events, magmatic activity, and depositional trends

    NASA Astrophysics Data System (ADS)

    Uliana, M. A.; Biddle, K. T.

    The late Paleozoic to late Cenozoic evolution of northern Patagonia was influenced significantly by events that occurred while the area was part of the South American sector of Gondwanaland. Late Paleozoic to Middle Triassic subduction along the edge of the supercontinent formed a broad convergent-margin system that is the underpinning of northern Patagonia. Deformation (Gondwanidian orogeny) associated with the subduction is recognized in both the forearc and the convergent backarc areas. Regional extension, accompanied by bimodal volcanism, began in the Late Triassic and led to the formation of a number of north-northwest trending rift basins in Patagonia, which generally followed the Gondwanidian basement grain. Continued extension in the Jurassic and Early Cretaceous led to the opening of the Rocas Verdes marginal basin in southern Chile and, ultimately, to the opening of the South Atlantic Ocean. Once oceanic crust began to form, faulting and volcanism declined in Patagonia. During the late Early Cretaceous to the Late Cretaceous, sags over the rift basins coalesced to form a broad backarc basin behind the volcanic arc to the west. These sags are suggestive of thermally driven subsidence. Subsidence of the evolving Atlantic margin allowed extensive marine transgressions to take place from the east. The stratigraphic record of northern Patagonia reflects these events. The upper Paleozoic to upper Mesozoic sedimentary sequences were deposited in basins directly associated with convergent activity along the margin of Gondwanaland or in rift basins created during its breakup. Even though the Tertiary evolution of Patagonia was dominated by events along the western margin of South America, the patterns of sediment transport, thickness, and general shoreline position were still influenced by the locations of the Mesozoic rifts formed during the breakup of Gondwanaland.

  13. Mass movements in fjords caused by seismic activity? A case study from Balsfjord, northern Norway.

    NASA Astrophysics Data System (ADS)

    Forwick, M.; Vorren, T. O.

    2003-04-01

    Fjords can provide excellent opportunities for investigating sedimentary processes related to slope failures. Balsfjord is a 46 km long and maximum 5 km wide fjord in northern Norway, about 10 km south of Tromsø. An end moraine divides the fjord into an Inner and Outer Basin. High-resolution seismic data (3.5 kHz penetration echo sounder), as well as two piston cores, one from each basin, were analysed. The objective of this study was to find submarine deposits that could be used to study the regionality and chronology of postglacial mass-movement activity in northern Norway. Various types of gravity flows were identified, i.e. slumps, debris flows and turbidites. Maximum thickness of one debris flow is c. 15 m. Two marked turbidites have a lateral extent of about 10 km. The origins of some slumps and debris flows include slope failure of the end moraine crossing the fjord, as well as in front of a river mouth. The origin of the turbidites will be studied using grain-size distribution. Three mass-movement events in both basins are correlated using radiocarbon dates. Since these events can be identified in both basins, they are suggested to indicate regional avalanche activity. The three events were bracketed between 9400 radiocarbon years BP and 9100 radiocarbon years BP. This time span fits into the period of most rapid postglacial isostatic uplift in areas adjacent to Balsfjord (Corner and Haugane, 1993). A close correlation between a steep uplift gradient and earthquake frequency/magnitude is suggested by several authors (e.g. Bøe et al., 2001). Thus, seismic activity can be regarded as a potential trigger mechanism for mass-movement activity in Balsfjord. References: Bøe, R., Hovland, M., Instanes, A., Rise, L. and Vasshus, S., 2000. Submarine slide scars and mass movements in Karmsundet and Skudenesfjorden, southwestern Norway: morphology and evolution. Marine Geology, 167(1-2): 147-165. Corner, G.D. and Haugane, E., 1993. Marine-lacustrine stratigraphy of

  14. Seismic Activity in Northern Izu-Bonin arc by Ocean Bottom Seismograph Observations

    NASA Astrophysics Data System (ADS)

    Obana, K.; Kamiya, S.; Kodaira, S.; Suetsugu, D.; Takahashi, N.; Sakaguchi, H.

    2006-12-01

    The Izu-Bonin Island arc is an oceanic island arc, where the Pacific plate subducts beneath the Philippine Sea plate. Suyehiro et al. (1996) found a thick andesitic middle crust with velocity of 6 km/s in northern Izu arc. Recent active seismic experiments in the Izu-Bonin arc show significant variations of the thickness of the middle crust along the volcanic front (Kodaira et al, 2005). The thickness of the middle crust shows an inverse correlation with the average P-wave crustal velocity and the SiO2 composition of the Quaternary volcanoes along the arc. Crustal evolution in the oceanic island arc is a process including magma evolution in the mantle wedge. To understand the nature of the crustal evolution in the oceanic island arc, we have to clarify structures in the mantle wedge along the arc in addition to the oceanic island arc crust. We conducted seismicity observations by a temporal ocean bottom seismograph (OBS) network in northern Izu-Bonin arc between Tori-shima and Hachijo-jima (30° to 34°N) to investigate structures of the oceanic island arc crust and the mantle wedge in northern Izu-Bonin arc by seismic tomography. The OBS network consists of 40 pop-up type OBSs with a three-component short-period seismometer. The OBSs were deployed in April 2006 and retrieved in July after about 80-day observations. The OBS data were processed with seismic data recorded at island stations on Hachijo-jima and Aoga-shima. These island stations are operated by National Research Institute for Earth Science and Disaster Prevention. From the preliminary results of the hypocenters, many earthquakes were located along the subducting Pacific plate. Along the volcanic front, shallow earthquake clusters were observed around Tori-shima and Sumisu-Jima islands. Another shallow earthquake cluster was observed near a seamount of echelon chains in the back-arc region of the Izu-Bonin arc. Earthquakes in the fore-arc region show strong attenuation at OBSs in the back-arc region

  15. [Contribution of Western blotting to the diagnosis of hydatidosis].

    PubMed

    Makni, F; Hachicha, L; Mseddi, F; Hammami, H; Cheikhrouhou, F; Sellami, H; Sellami, A; Mzali, R; Boujelbène, S; Rebaï, R; Beyrouti, I; Ayadi, A

    2007-08-01

    The aim of this study is to evaluate the contribution of the immunoWesternblot for the diagnosis and the post surgical follow-up of the hydatidosis. 71 sera from patients with hydatidosis confirmed by surgery were studied. All had a negative hydatic serology by screening tests (enzyme-linked immunosorbent assay, hemagglutination, electrosyneresis). 12 patients with sera in pre and post operative were monitored for 2 years. The Echinococcus Western blot IgG permitted to rectify the diagnosis of hydatidosis in 67.6 %. The rate of positivity was 100 % for the multivesicular liver cysts, 60 % for the young cysts and 50 % for the calcified cysts. Western blot permitted to rectify the diagnosis of lung cysts in 62.5 % of cases and in 50 % of cranial-spinal localizations. Analysis of Western Blot evolution in the 12 patients followed in pre and post-surgical revealed the disappearance of the bands 16, 18 and 26-28kDa in 8 month in the 8 patients with complete exeresis. This study proved the value added of Western blot compared to the other traditional techniques for the immunodiagnostic and the post-surgical monitoring of hydatidosis. PMID:17824307

  16. Planetary wave activity in the troposphere and stratosphere during the Northern Hemisphere winter

    NASA Technical Reports Server (NTRS)

    Shiotani, Masato

    1986-01-01

    The relation between planetary wave activity in the troposphere and stratosphere during the Northern Hemisphere winter from December 1981-March 1982 is studied. The Eliassen-Palm (E-P) flux diagnostics was applied to global tropospheric data for 1000 to 100 mb and global stratospheric data for 70 to 0.4 mb. The vertical component of the E-P flux, which is a measure of the vertical propagation of wave activity, and wave driving are examined. It is observed that the magnitude of the vertical component of the E-P flux varies with a period of 10-15 days in both the troposphere and the stratosphere; however, the correlation between the wave activity in the troposphere and stratosphere is different during the pre- and postwarming periods. The two types of correspondence between the wave activity are: (1) an out-of-plane relationship and (2) an upward propagation of wave activity from the troposphere to the stratosphere. The dynamical features of these two periods are described.

  17. Seasonal divergence in the interannual responses of Northern Hemisphere vegetation activity to variations in diurnal climate.

    PubMed

    Wu, Xiuchen; Liu, Hongyan; Li, Xiaoyan; Liang, Eryuan; Beck, Pieter S A; Huang, Yongmei

    2016-01-01

    Seasonal asymmetry in the interannual variations in the daytime and nighttime climate in the Northern Hemisphere (NH) is well documented, but its consequences for vegetation activity remain poorly understood. Here, we investigate the interannual responses of vegetation activity to variations of seasonal mean daytime and nighttime climate in NH (>30 °N) during the past decades using remote sensing retrievals, FLUXNET and tree ring data. Despite a generally significant and positive response of vegetation activity to seasonal mean maximum temperature (Tmax) in ~22-25% of the boreal (>50 °N) NH between spring and autumn, spring-summer progressive water limitations appear to decouple vegetation activity from the mean summer Tmax, particularly in climate zones with dry summers. Drought alleviation during autumn results in vegetation recovery from the marked warming-induced drought limitations observed in spring and summer across 24-26% of the temperate NH. Vegetation activity exhibits a pervasively negative correlation with the autumn mean minimum temperature, which is in contrast to the ambiguous patterns observed in spring and summer. Our findings provide new insights into how seasonal asymmetry in the interannual variations in the mean daytime and nighttime climate interacts with water limitations to produce spatiotemporally variable responses of vegetation growth. PMID:26751166

  18. Seasonal divergence in the interannual responses of Northern Hemisphere vegetation activity to variations in diurnal climate

    PubMed Central

    Wu, Xiuchen; Liu, Hongyan; Li, Xiaoyan; Liang, Eryuan; Beck, Pieter S. A.; Huang, Yongmei

    2016-01-01

    Seasonal asymmetry in the interannual variations in the daytime and nighttime climate in the Northern Hemisphere (NH) is well documented, but its consequences for vegetation activity remain poorly understood. Here, we investigate the interannual responses of vegetation activity to variations of seasonal mean daytime and nighttime climate in NH (>30 °N) during the past decades using remote sensing retrievals, FLUXNET and tree ring data. Despite a generally significant and positive response of vegetation activity to seasonal mean maximum temperature () in ~22–25% of the boreal (>50 °N) NH between spring and autumn, spring-summer progressive water limitations appear to decouple vegetation activity from the mean summer , particularly in climate zones with dry summers. Drought alleviation during autumn results in vegetation recovery from the marked warming-induced drought limitations observed in spring and summer across 24–26% of the temperate NH. Vegetation activity exhibits a pervasively negative correlation with the autumn mean minimum temperature, which is in contrast to the ambiguous patterns observed in spring and summer. Our findings provide new insights into how seasonal asymmetry in the interannual variations in the mean daytime and nighttime climate interacts with water limitations to produce spatiotemporally variable responses of vegetation growth. PMID:26751166

  19. Seasonal divergence in the interannual responses of Northern Hemisphere vegetation activity to variations in diurnal climate

    NASA Astrophysics Data System (ADS)

    Wu, Xiuchen; Liu, Hongyan; Li, Xiaoyan; Liang, Eryuan; Beck, Pieter S. A.; Huang, Yongmei

    2016-01-01

    Seasonal asymmetry in the interannual variations in the daytime and nighttime climate in the Northern Hemisphere (NH) is well documented, but its consequences for vegetation activity remain poorly understood. Here, we investigate the interannual responses of vegetation activity to variations of seasonal mean daytime and nighttime climate in NH (>30 °N) during the past decades using remote sensing retrievals, FLUXNET and tree ring data. Despite a generally significant and positive response of vegetation activity to seasonal mean maximum temperature () in ~22-25% of the boreal (>50 °N) NH between spring and autumn, spring-summer progressive water limitations appear to decouple vegetation activity from the mean summer , particularly in climate zones with dry summers. Drought alleviation during autumn results in vegetation recovery from the marked warming-induced drought limitations observed in spring and summer across 24-26% of the temperate NH. Vegetation activity exhibits a pervasively negative correlation with the autumn mean minimum temperature, which is in contrast to the ambiguous patterns observed in spring and summer. Our findings provide new insights into how seasonal asymmetry in the interannual variations in the mean daytime and nighttime climate interacts with water limitations to produce spatiotemporally variable responses of vegetation growth.

  20. Numerical modeling of an intense precipitation event and its associated lightning activity over northern Greece

    NASA Astrophysics Data System (ADS)

    Pytharoulis, I.; Kotsopoulos, S.; Tegoulias, I.; Kartsios, S.; Bampzelis, D.; Karacostas, T.

    2016-03-01

    This study investigates an intense precipitation event and its lightning activity that affected northern Greece and primarily Thessaloniki on 15 July 2014. The precipitation measurement of 98.5 mm in 15 h at the Aristotle University of Thessaloniki set a new absolute record maximum. The thermodynamic analysis indicated that the event took place in an environment that could support deep thunderstorm activity. The development of this intense event was associated with significant low-level convergence and upper-level divergence even before its triggering and a positive vertical gradient of relative vorticity advection. The high resolution (1.667 km × 1.667 km) non-hydrostatic WRF-ARW numerical weather prediction model was used to simulate this intense precipitation event, while the Lightning Potential Index was utilized to calculate the potential for lightning activity. Sensitivity experiments suggested that although the strong synoptic forcing assumed primary role in the occurrence of intense precipitation and lightning activity, their spatiotemporal variability was affected by topography. The application of the very fine resolution topography of NASA Shuttle Radar Topographic Mission improved the simulated precipitation and the calculated lightning potential.

  1. Active deformation in the frontal part of the Northern Apennines: insights from the lower Metauro River basin area (northern Marche, Italy) and adjacent Adriatic off-shore

    NASA Astrophysics Data System (ADS)

    Di Bucci, D.; Mazzoli, S.; Nesci, O.; Savelli, D.; Tramontana, M.; De Donatis, M.; Borraccini, F.

    2003-09-01

    An integration of seismological data with geological and geomorphological information aided by seismic interpretation was performed to characterise the Quaternary tectonic evolution of the Metauro River basin area (northern Marche) and adjacent off-shore sector of the external Northern Apennines. On-shore, along the Adriatic coast, the youngest age of thrusting and folding post-dates the Early-Middle Pliocene, while Pleistocene deposits appear to be, at least in part, not involved in the deformation. Recent (i.e. post-thrusting) tectonic structures have been recognised both in pre-Quaternary substratum rocks and in Upper Quaternary continental deposits (Upper Pleistocene terrace alluvium, Upper Pleistocene-Holocene slope deposits). These faults are all compatible with a WSW-ENE oriented extension. In the Metauro River basin area, preserved flights of stream terraces have been categorised according to the presence or absence of alluvial suites in relationship to each terrace level. Here, based on both the heights above the valley floor and the areal distribution of stream terraces, a generalised vertical tectonic uplift can be inferred, particularly during the Middle-Late Pleistocene. Moreover, the along-valley distribution of stream terraces provides further constraints on the age of thrusting and folding. In fact, the reconstructed terrace-levels are substantially parallel, and no evidence for any significant deformation by fold activity has been recognised. Local deformation displayed by both terrace surfaces and alluvial/slope-waste deposits suggests, instead, the intervening of some minor differential movements associated with the generalised uplift and/or to Middle-Late Pleistocene normal faulting. Their occurrence appears anyhow to be unrelated with the pattern of folds and associated thrusts. The present-day seismic activity of the study area was considered by analysing 83 seismic events that occurred from 1987 to 2000. The epicentre distribution is very

  2. Past Activity of Non-sorted Circles Fields in Northern Sweden

    NASA Astrophysics Data System (ADS)

    Becher, M.; Klaminder, J.

    2011-12-01

    Non-sorted circles (NSCs), also known as frost boils, are common geomorphological features created by cryogenic processes in subarctic and arctic soils [Washburn, 1979]. Near-surface permafrost is thought to be a prerequisite for the activity of NSCs [Walker et al., 2008], where an active NSC maintains a sparsely vegetated circle-like zone in the centre due to frost heave and up-freezing of silt. Little is known about the historical activity of NSCs in northern Scandinavia. Here we summarize some results of our ongoing research where we have assessed historical changes in NSC activity in the Abisko area, northern Sweden. In short, we have estimated how the distribution of NSCs along an altitude gradient has changed from 1959 to 2008 by using digitized aerial photos. Unsupervised classification with two classes (bare mineral soil and shrub vegetation) was performed on NSC fields to achieve estimations on how the aerial coverage of up-frozen mineral soil has changed over the last decades. Here, over growth of previous bare mineral soil surfaces by shrubs was interpreted as decreased NSC activity, considering that vascular plants are unable to colonize active NSCs due to significant heave and disruption of plant roots [Jonasson, 1986]. In addition to observations from aerial photos, we have conducted vertical sampling of NSC soil stratigraphies and 14C-dated buried organic soil layers to constrain the historical activity of the NSC in time. Preliminary analyses of the aerial photos indicate a general overgrowth of bare mineral surfaces within the NSCs since 1959. Of 137 studied sites 92 sites (corresponding to 67%) show an net overgrowth of previous bare mineral soil surface within the circles. On average, about 29 % of the bare mineral soil within the NSC fields is estimated to have been colonized by shrub vegetation. Clearly, our findings indicate that permafrost-controlled soil frost activities of the studied NSCs have mainly decreased during the last five decades

  3. Development of a heat-mediated protein blotting method.

    PubMed

    O'Sullivan, Jack; McMahon, Hilary E M

    2016-04-15

    Western blotting is a significant tool employed for the detection of cell proteins. High-molecular-weight proteins have proven a challenge to detect by western blotting, but proteins even of 100 KDa can still present difficulties in detection. This work reports the development of a heat transfer method that is suitable for both low- and high-molecular-weight proteins. The procedure involves the use of a constant temperature at 78 °C in a dedicated heat transfer module. Through the use of this protocol the neuronal adaptor protein X11α (120 KDa), which prior to this methodology was undetectable endogenously in the neuroblastoma cell line (N2a), was successfully detected in the N2a cell line. The procedure provides a reproducible protocol that can be adapted for other high-molecular-weight proteins, and it provides the advantage that low-molecular-weight proteins are not sacrificed by the methodology. PMID:26869081

  4. Bacterial pollution, activity and heterotrophic diversity of the northern part of the Aegean Sea, Turkey.

    PubMed

    Çiftçi Türetken, Pelin S; Altuğ, Gülşen

    2016-02-01

    Isolation and characterization studies of marine heterotrophic bacteria are important to describe and understand eco-metobolism of the marine environments. In this study, diversity and community structures of the culturable heterotrophic bacteria, metabollicaly active bacteria and bacterial pollution in the coastal and offshore areas of Gökçeada Island, in the Northern Aegean Sea, Turkey were investigated from March 2012 to November 2013. The primary hydrographic parameters were recorded in situ. The frequency of the metabolically active bacteria was determined by using a modified staining technique. The indicator bacteria were determined by using membrane filtration technique; 126 bacteria isolates, 24 of them first records for this region, were identified using an automated micro-identification system, VITEK2 Compact30. The results showed that detected bacterial community profiles were significantly different when compared with previous studies conducted in polluted marine areas of Turkey. High frequency of faecal bacteria detected at station 2 indicated that increasing human activities and terrestrial pollution sources are shaping factors for possible risks, regarding recreational uses of this region, in the summer seasons. PMID:26832724

  5. Metal contamination of active stream sediments in upper Weardale, northern Pennine Orefield, UK.

    PubMed

    Lord, R A; Morgan, P A

    2003-03-01

    In the Upper Weardale area the headwaters of the River Wear bisect the Northern Pennine Orefield, where Pb-Zn-F-Ba vein-type mineralisation has been exploited since the Roman Conquest. The area contains evidence of open pit, underground and hydraulic mining of base metal ores, associated mineral processing and smelting, exploitation of ironstones during the industrial revolution, recent extraction of fluorite and active quarrying. The aim of this study was to determine the extent of modern sediment contamination arising from these past activities. Samples of active stream sediments were collected from all major drainage channels at 1 km intervals. The sediments were analysed for Pb, Zn, Ba, Mn, Fe, Co, Ni, Cu, Cr, As, Sb, Ag and compared to data from earlier regional geochemical surveys of low order drainage samples using ArcView software. The significance of contamination levels was assessed using the Ontario aquatic sediment quality guidelines. Our results indicate widespread contamination of some major drainages by Pb, Mn, Zn and As at concentration levels anticipated to significantly affect use of the sediments by benthic organisms. Furthermore, Pb contamination shows persistence in stream sediments downstream towards agricultural areas of the floodplain and drinking water abstraction points, above which interaction with colliery mine water discharges may occur. PMID:12901084

  6. Diet, Physical Activity, and Obesity in School-Aged Indigenous Youths in Northern Australia

    PubMed Central

    Valery, Patricia C.; Ibiebele, Torukiri; Harris, Mark; Green, Adèle C.; Cotterill, Andrew; Moloney, Aletia; Sinha, Ashim K.; Garvey, Gail

    2012-01-01

    Purpose. To examine the relationship between diet, physical activity, and obesity in Indigenous youths from northern Australia. Methods. In a cross-sectional study, physical activity and dietary intake (“short nutrition questionnaire”) were assessed among all youths during a face-to-face interview. For 92 high school youths, additional dietary information was assessed using a food-frequency questionnaire. Height and weight were measured and BMI was calculated. Multiple logistic regression was used to assess associations. Results. Of the 277 youths included, 52% had ≤2 servings of fruit and 84% had <4 servings of vegetables per day; 65% ate fish and 27%, take-away food (“fast food”) at least twice a week. One in four ate local traditional sea food including turtle and dugong (a local sea mammal) at least twice a week. Overweight/obese youths engaged in fewer days of physical activity in the previous week than normal weight youths (OR = 2.52, 95% CI 1.43–4.40), though patterns of physical activity differed by sex and age (P < 0.001). Overweight/obese youths were 1.89 times (95% CI 1.07–3.35) more likely to eat dugong regularly than nonobese youths. Analysis of food-frequency data showed no difference by weight assessment among high-school students. Conclusions. Low fruit and vegetable intake were identified in these Indigenous youths. Regular consumption of fried dugong and low frequency of physical activity were associated with overweight/obesity reinforcing the need to devise culturally appropriate health promotion strategies and interventions for Indigenous youths aimed at improving their diet and increasing their physical activity. PMID:22720140

  7. Increasing late winter-early spring fire activity in Northern Spain: climate change or human footprint?

    NASA Astrophysics Data System (ADS)

    Carracedo Martín, Virginia; García Codron, Juan Carlos; Rasilla Álvarez, Domingo

    2016-04-01

    Most of the fire activity across Spain concentrates during the summer months, but a secondary peak appears also during late winter and early spring (February and March). This peak represents a tiny fraction of the burned surface but in northern Spain becomes the main fire season, representing up to 60 % of the total burned surface. Moreover, the impact of this "unseasonal" fire regime is becoming more relevant; an analysis of the temporal evolution of the burned surface since 2005 shows that the suppression efforts of summer forest fires have apparently succeeded, while the opposite has occurred with late winter-early spring forest fires. For example, during March 2012 more than 22,000 ha were burned in the Spanish provinces of Asturias and Cantabria, while about 14,000 suffers the effects of fires in Northern Portugal. Anthropogenic factor (mostly linked to an extensive cattle farming in the mountains) are the main cause of such fire activity, but atmospheric factors also play a relevant role in the spread of this fires. Consequently, the main aim of this poster is to explore if the recent evolution of forest fires in the study area are consequence of an aggravation of the atmospheric conditions driving to more fire risk conditions, or other factor could also explain the increase in fire activity. Burned surface data obtained from official statistics since 1971 were compared with atmospheric data at two temporal scales: daily fire risk values calculated from synoptic records and long term drought indices (SPI and SPEI). The results show a long term increase in both daily fire risk and drought conditions, but this trend can be related to the background warming of the area, rather to an increase in the frequency and magnitude of the extreme fire weather events. Thus, we consider that the regional atmospheric evolution cannot explain by itself the recent increase in late winter-early spring fire activity. Additional anthropogenic factors, such as recent changes in

  8. Lipid A binding proteins in macrophages detected by ligand blotting

    SciTech Connect

    Hampton, R.Y.; Golenbock, D.T.; Raetz, C.R.H.

    1987-05-01

    Endotoxin (LPS) stimulates a variety of eukaryotic cells. These actions are involved in the pathogenesis of Gram-negative septicemia. The site of action of the LPS toxic moiety, lipid A (LA), is unclear. Their laboratory has previously identified a bioactive LA precursor lipid IV/sub A/, which can be enzymatically labeled with /sup 32/P/sub i/ (10/sup 9/ dpm/nmole) and purified (99%). They now show that this ligand binds to specific proteins immobilized on nitrocellulose (NC) from LPS-sensitive RAW 264.7 cultured macrophages. NC blots were incubated with (/sup 32/P)-IV/sub A/ in a buffer containing BSA, NaCl, polyethylene glycol, and azide. Binding was assessed using autoradiography or scintillation counting. Dot blot binding of the radioligand was inhibited by excess cold IV/sub A/, LA, or ReLPS but not by phosphatidylcholine, cardiolipin, phosphatidylinositol, or phosphatidic acid. Binding was trypsin-sensitive and dependent on protein concentration. Particulate macrophage proteins were subjected to SDS-PAGE and then electroblotted onto NC. Several discrete binding proteins were observed. Identical treatment of fetal bovine serum or molecular weight standards revealed no detectable binding. By avoiding high nonspecific binding of intact membranes, this ligand blotting assay may be useful in elucidating the molecular actions of LPS.

  9. No covariation between the geomagnetic activity and the incidence of acute myocardial infarction in the polar area of northern Sweden

    NASA Astrophysics Data System (ADS)

    Messner, T.; Häggström, I.; Sandahl, I.; Lundberg, V.

    2002-05-01

    This study was undertaken to investigate whether there was any relation between the aurora borealis (measured as the geomagnetic activity) and the number of acute myocardial infarctions (AMI) in the northern, partly polar, area of Sweden. The AMI cases were collected from The Northern Sweden MONICA (multinational MONItoring of trends and determinants of CArdiovascular disease) AMI registry between 1985 and 1998, inclusive, and the information on the geomagnetic activity from continuous measurements at the Swedish Institute of Space Physics, Kiruna. In the analyses, both the relation between the individual AMI case and ambient geomagnetic activity, and the relation between the mean daily K index and the daily number of AMI cases were tested. We found no statistically significant relation between the number of fatal or non-fatal AMI cases, the number of sudden deaths or the number of patients with chest pain without myocardial damage, and geomagnetic activity. Our data do not support a relation between the geomagnetic activity and AMI.

  10. The Impact of the School-Based Psychosocial Structured Activities (PSSA) Program on Conflict-Affected Children in Northern Uganda

    ERIC Educational Resources Information Center

    Ager, Alastair; Akesson, Bree; Stark, Lindsay; Flouri, Eirini; Okot, Braxton; McCollister, Faith; Boothby, Neil

    2011-01-01

    Background: Children in northern Uganda have undergone significant psychosocial stress during the region's lengthy conflict. A Psychosocial Structured Activities (PSSA) program was implemented in 21 schools identified as amongst those most severely affected by conflict-induced displacement across Gulu and Amuru Districts. The PSSA intervention…

  11. Assessing Health-Related Quality of Life in Northern Plains American Indians: Prominence of Physical Activity as a Health Behavior

    ERIC Educational Resources Information Center

    Poltavski, Dmitri; Holm, Jeffrey; Vogeltanz-Holm, Nancy; McDonald, Leander

    2010-01-01

    Associations of behavioral health risks and healthy behaviors with self-reported health-related quality of life measures were investigated in a Northern Plains American Indian sample. Participants were surveyed in person using the Behavioral Risk Factor Surveillance Survey. The results showed that regular physical activity was significantly…

  12. Seismic activity, inferred crustal stresses and seismotectonics in the Rana region, Northern Norway

    NASA Astrophysics Data System (ADS)

    Hicks, Erik C.; Bungum, Hilmar; Lindholm, Conrad D.

    2000-10-01

    The seismotectonic significance of the Rana region is known both from the fact that this was the location of the largest known earthquake in Fennoscandia in recent times, the MS 5.8-6.2 earthquake of August 31, 1819, and from its relatively high, constant seismic activity also in the 20th century. In order to study this region in more detail, a local seismic network has been in operation there since July 1997, as part of the NEONOR (Neotectonics in Norway) project. The network was primarily designed to detect possible activity on the Båsmoen fault which runs ˜50 km subparallel to the Rana fjord, and which shows signs of likely post glacial activity. The results have revealed a quite complex spatio-temporal distribution of seismic activity, and has also shown no activity on the Båsmoen fault itself. During the first 18 months of operation (July 1997-January 1999), the network has detected 373 locatable seismic events, of which 267 were local earthquakes. Most of these earthquakes occurred in five groups in the western parts of the network. All five groups had similar NNW-ESW trends in epicenter locations, and all have shallow foci (2-12 km), similar to what has also been found earlier for other concentrated earthquake zones in Northern Norway, and the magnitude range is between ML 0.1 and 2.8. Earthquake focal mechanism solutions within the network reveal a predominance for normal faulting with the tensional stress axis perpendicular do the coastline (implying an unusual coast-parallel orientation of the principal horizontal compressive stress). The earthquakes occur in a region of maximum post-glacial uplift gradients, which supports deglaciation flexure as a viable explanation for these earthquakes. A certain influence from more local factors, however, tied in general to crustal in homogeneities, cannot be ruled out.

  13. Quasisecular cyclicity in the climate of the Earth's Northern Hemisphere and its possible relation to solar activity variations

    NASA Astrophysics Data System (ADS)

    Ogurtsov, M. G.; Jungner, H.; Lindholm, M.; Helama, S.; Dergachev, V. A.

    2009-12-01

    Paleoclimatological reconstructions of temperature of the Earth’s Northern Hemisphere for the last thousand years have been studied using the up-to-date methods of statistical analysis. It has bee indicated that the quasisecular (a period of 60-130 years) cyclicity, which is observed in the climate of the Earth’s Northern Hemisphere, has a bimodal structure, i.e., being composed of the 60-85 and 85-130 year periodicities. The possible relation of the quasisecular climatic rhythm to the corresponding Gleissberg solar cycle has been studied using the solar activity reconstructions performed with the help of the solar paleoastrophysics methods.

  14. Measurements of 222Rn activity concentration in domestic water sources in Penang, northern peninsular Malaysia.

    PubMed

    Muhammad, B G; Jaafar, M S; Azhar, A R; Akpa, T C

    2012-04-01

    Measurements of (222)Rn activity concentration were carried out in 39 samples collected from the domestic and drinking water sources used in the island and mainland of Penang, northern peninsular, Malaysia. The measured activity concentrations ranged from 7.49 to 26.25 Bq l(-1), 0.49 to 9.72 Bq l(-1) and 0.58 to 2.54 Bq l(-1) in the raw, treated and bottled water samples collected, respectively. This indicated relatively high radon concentrations compared with that from other parts of the world, which still falls below the WHO recommended treatment level of 100 Bq l(-1). From this data, the age-dependent associated committed effective doses due to the ingestion of (222)Rn as a consequence of direct consumption of drinking water were calculated. The committed effective doses from (222)Rn resulting from 1 y's consumption of these water were estimated to range from 0.003 to 0.048, 0.001 to 0.018 and 0.002 to 0.023 mSv y(-1), for age groups 0-1, 2-16 and >16 y, respectively. PMID:21642647

  15. Geomorphological markers of faulting and neotectonic activity along the western Andean margin, northern Chile

    NASA Astrophysics Data System (ADS)

    Audin, Laurence; Herail, Gérard; Riquelme, Rodrigo; Darrozes, José; Martinod, Joseph; Font, Eric

    2003-12-01

    In the Atacama Desert, northern Chile, some ephemeral channels are developed in the Plio-Quaternary alluvial sequence that caps the Neogene Atacama Gravels Formation. Geomorphological studies and high-resolution digital elevation data (GPS) along a structural transect in the Central Depression are used to document modern growth history of subtle folding and faulting in the fore-arc region. Outcrop data of the most recent deposits are combined with observations of warped and faulted late Quaternary pediments, alluvial fans and terrace surfaces to propose unsuspected neotectonic processes on the western flank of the Domeyko Cordillera. Neotectonic process recognition is here based largely upon the interpretation of alluvial landforms, drainage organisation and evolution as the intermittent river network shows systematic patterns of course deflections, successive incisions or deposition processes as it encounters the fault scarps or folds in the superficial deposits. This area presents both N-S-trending active vertical faults in the topographically higher pampas, and N-S-trending active folding in the lower pampas. These faults seem to accommodate E-W extension and compression that could be related to uplift of the western Andean margin within a compressive context. Uplift may have taken place unevenly over the past few million years after the deposition of the superficial alluvial surfaces that cap the Neogene Atacama Gravels. Copyright

  16. Recent environmental change and prehistoric human activity in Egypt and Northern Sudan

    NASA Astrophysics Data System (ADS)

    Nicoll, Kathleen

    2004-03-01

    This paper reviews the various Late Quaternary records that are available from western Egypt and northern Sudan, which includes more than 500 published radiocarbon dates and various sedimentary archives from local landscape components, including palaeolakes, soils, drainages (wadis), and archaeological sites. This palaeoenvironmental compilation frames the spatial and temporal context of local cultural activities when the region was most hospitable ˜9000-6000 BP; at this time, monsoonal weather influenced the portion of the African continental interior, creating enough convective rainfall for occasional surface water storage. In this part of the modern Sahara, rapid hydroclimatic changes play a key role in geomorphic evolution and resource availability. As 'watering holes' formed and dried up in the Early to Middle Holocene, Neolithic people developed various subsistence strategies, including opportunistic hunting of small animals (e.g. gazelle and hare), and food-related (e.g. wild sorghum, millet, and legumes) activities: gathering, plant cultivation and livestock-rearing. During its wettest phases during the 'monsoonal maximum,' the area was drought-prone, sustaining a meager steppe-shrub desert flora. Further desertification and aeolian deflation during the Middle and Late Holocene fostered technological innovation, migration and settlement, as well as the further development of agrarian communities and complex culture.

  17. Simulation of quasi-linear mesoscale convective systems in northern China: Lightning activities and storm structure

    NASA Astrophysics Data System (ADS)

    Li, Wanli; Qie, Xiushu; Fu, Shenming; Su, Debin; Shen, Yonghai

    2016-01-01

    Two intense quasi-linear mesoscale convective systems (QLMCSs) in northern China were simulated using the WRF (Weather Research and Forecasting) model and the 3D-Var (three-dimensional variational) analysis system of the ARPS (Advanced Regional Prediction System) model. A new method in which the lightning density is calculated using both the precipitation and non-precipitation ice mass was developed to reveal the relationship between the lightning activities and QLMCS structures. Results indicate that, compared with calculating the results using two previous methods, the lightning density calculated using the new method presented in this study is in better accordance with observations. Based on the calculated lightning densities using the new method, it was found that most lightning activity was initiated on the right side and at the front of the QLMCSs, where the surface wind field converged intensely. The CAPE was much stronger ahead of the southeastward progressing QLMCS than to the back it, and their lightning events mainly occurred in regions with a large gradient of CAPE. Comparisons between lightning and non-lightning regions indicated that lightning regions featured more intense ascending motion than non-lightning regions; the vertical ranges of maximum reflectivity between lightning and non-lightning regions were very different; and the ice mixing ratio featured no significant differences between the lightning and non-lightning regions.

  18. Major off-axis hydrothermal activity on the northern Gorda Ridge

    SciTech Connect

    Rona, P.A. ); Denlinger, R.P. ); Fisk, M.R.; Howard, K.J.; Taghon, G.L. ); Klitgord, K.D. ); McClain, J.S. ); McMurray, G.R. ); Wiltshire, J.C. )

    1990-06-01

    The first hydrothermal field on the northern Gorda Ridge, the Sea Cliff hydrothermal field, was discovered and geologic controls of hydrothermal activity in the rift valley were investigated on a dive series using the DSV Sea Cliff. The Sea Cliff hydrothermal field was discovered where predicted at the intersection of axis-oblique and axis-parallel faults at the south end of a linear ridge at mid-depth (2700 m) on on the east wall. Preliminary mapping and sampling of the field reveal: a setting nested on nearly sediment-free fault blocks 300 m above the rift valley floor 2.6 km from the axis; a spectrum of venting types from seeps to black smokers; high conductive heat flow estimated to be equivalent to the convective flux of multiple black smokers through areas of the sea floor sealed by a caprock of clastic breccia primarily derived from basalt with siliceous cement and barite pore fillings; and a vent biota with Juan de Fuca Ridge affinities. These findings demonstrate the importance of off-axis hydrothermal activity and the role of the intersection of tectonic lineations in controlling hydrothermal sites at sea-floor spreading centers.

  19. The criminal use of improvised and re-activated firearms in Great Britain and Northern Ireland.

    PubMed

    Warlow, Thomas A

    2007-11-01

    Following the Hungerford Massacre the British Government imposed additional strict firearms legislation in 1988 that involved several classes of arms being placed into the prohibited category. By way of compensation a scheme was introduced to allow the unrestricted possession and transfer of the newly prohibited arms, other firearms and "prohibited weapons", if de-activated to a standard acceptable to the Secretary of State. Approved standards for firearm de-activation were drawn up in 1989. The inspection of the de-activated arms was devolved to the two Gun Barrel Proof Houses at London and Birmingham, as otherwise the task of inspecting the thousands of guns involved would have overloaded the firearms section at the Huntingdon Forensic Science Service Laboratory, who were already dealing with criminal firearms cases submitted by 41 of the 43 police forces throughout England and Wales, as well as providing technical assistance to the Home Office and Government Ministers. Members of the Gun Trade made representations to the Minister involved during the initial stages of setting up the official de-activation standards. This resulted in some measure of compromise in the range and nature of the de-activation requirements. Although it was clear that some individuals possessing the necessary skill and equipment might attempt to restore the odd weapon to a working condition, the scheme appeared to work reasonably well for the next few years. However, over the passage of time, criminal casework submissions to the Huntingdon Laboratory from industrial city areas along the M62 corridor of northern England revealed a steadily growing trend in the use of re-activated arms, which in a significant number of cases involved the use of fully automatic weapons. At first, the nature of the re-activation processes used to restore these arms was quite crude. However, with the passage of time a steady improvement in the machining and welding skills used by the some of the culprits

  20. Seismic Surveys Negatively Affect Humpback Whale Singing Activity off Northern Angola

    PubMed Central

    Cerchio, Salvatore; Strindberg, Samantha; Collins, Tim; Bennett, Chanda; Rosenbaum, Howard

    2014-01-01

    Passive acoustic monitoring was used to document the presence of singing humpback whales off the coast of Northern Angola, and opportunistically test for the effect of seismic survey activity in the vicinity on the number of singing whales. Two Marine Autonomous Recording Units (MARUs) were deployed between March and December 2008 in the offshore environment. Song was first heard in mid June and continued through the remaining duration of the study. Seismic survey activity was heard regularly during two separate periods, consistently throughout July and intermittently in mid-October/November. Numbers of singers were counted during the first ten minutes of every hour for the period from 24 May to 1 December, and Generalized Additive Mixed Models (GAMMs) were used to assess the effect of survey day (seasonality), hour (diel variation), moon phase and received levels of seismic survey pulses (measured from a single pulse during each ten-minute sampled period) on singer number. Application of GAMMs indicated significant seasonal variation, which was the most pronounced effect when assessing the full dataset across the entire season (p<0.001); however seasonality almost entirely dropped out of top-ranked models when applied to a reduced dataset during the July period of seismic survey activity. Diel variation was significant in both the full and reduced datasets (from p<0.01 to p<0.05) and often included in the top-ranked models. The number of singers significantly decreased with increasing received level of seismic survey pulses (from p<0.01 to p<0.05); this explanatory variable was included among the top ranked models for one MARU in the full dataset and both MARUs in the reduced dataset. This suggests that the breeding display of humpback whales is disrupted by seismic survey activity, and thus merits further attention and study, and potentially conservation action in the case of sensitive breeding populations. PMID:24618836

  1. Natural oil slicks fuel surface water microbial activities in the northern Gulf of Mexico

    PubMed Central

    Ziervogel, Kai; D'souza, Nigel; Sweet, Julia; Yan, Beizhan; Passow, Uta

    2014-01-01

    We conducted a series of roller tank incubations with surface seawater from the Green Canyon oil reservoir, northern Gulf of Mexico, amended with either a natural oil slick (GCS-oil) or pristine oil. The goal was to test whether bacterial activities of natural surface water communities facilitate the formation of oil-rich marine snow (oil snow). Although oil snow did not form during any of our experiments, we found specific bacterial metabolic responses to the addition of GCS-oil that profoundly affected carbon cycling within our 4-days incubations. Peptidase and β-glucosidase activities indicative of bacterial enzymatic hydrolysis of peptides and carbohydrates, respectively, were suppressed upon the addition of GCS-oil relative to the non-oil treatment, suggesting that ascending oil and gas initially inhibits bacterial metabolism in surface water. Biodegradation of physically dispersed GCS-oil components, indicated by the degradation of lower molecular weight n-alkanes as well as the rapid transformation of particulate oil-carbon (C: N >40) into the DOC pool, led to the production of carbohydrate- and peptide-rich degradation byproducts and bacterial metabolites such as transparent exopolymer particles (TEP). TEP formation was highest at day 4 in the presence of GCS-oil; in contrast, TEP levels in the non-oil treatment already peaked at day 2. Cell-specific enzymatic activities closely followed TEP concentrations in the presence and absence of GCS-oil. These results demonstrate that the formation of oil slicks and activities of oil-degrading bacteria result in a temporal offset of microbial cycling of organic matter, affecting food web interactions and carbon cycling in surface waters over cold seeps. PMID:24847314

  2. Seismic surveys negatively affect humpback whale singing activity off northern Angola.

    PubMed

    Cerchio, Salvatore; Strindberg, Samantha; Collins, Tim; Bennett, Chanda; Rosenbaum, Howard

    2014-01-01

    Passive acoustic monitoring was used to document the presence of singing humpback whales off the coast of Northern Angola, and opportunistically test for the effect of seismic survey activity in the vicinity on the number of singing whales. Two Marine Autonomous Recording Units (MARUs) were deployed between March and December 2008 in the offshore environment. Song was first heard in mid June and continued through the remaining duration of the study. Seismic survey activity was heard regularly during two separate periods, consistently throughout July and intermittently in mid-October/November. Numbers of singers were counted during the first ten minutes of every hour for the period from 24 May to 1 December, and Generalized Additive Mixed Models (GAMMs) were used to assess the effect of survey day (seasonality), hour (diel variation), moon phase and received levels of seismic survey pulses (measured from a single pulse during each ten-minute sampled period) on singer number. Application of GAMMs indicated significant seasonal variation, which was the most pronounced effect when assessing the full dataset across the entire season (p<0.001); however seasonality almost entirely dropped out of top-ranked models when applied to a reduced dataset during the July period of seismic survey activity. Diel variation was significant in both the full and reduced datasets (from p<0.01 to p<0.05) and often included in the top-ranked models. The number of singers significantly decreased with increasing received level of seismic survey pulses (from p<0.01 to p<0.05); this explanatory variable was included among the top ranked models for one MARU in the full dataset and both MARUs in the reduced dataset. This suggests that the breeding display of humpback whales is disrupted by seismic survey activity, and thus merits further attention and study, and potentially conservation action in the case of sensitive breeding populations. PMID:24618836

  3. Seismicity characteristics of a potentially active Quaternary volcano: The Tatun Volcano Group, northern Taiwan

    NASA Astrophysics Data System (ADS)

    Konstantinou, Konstantinos I.; Lin, Cheng-Horng; Liang, Wen-Tzong

    2007-02-01

    The Tatun Volcano Group (TVG) is located at the northern tip of Taiwan, near the capital Taipei and close to two nuclear power plants. Because of lack of any activity in historical times it has been classified as an extinct volcano, even though more recent studies suggest that TVG might have been active during the last 20 ka. In May 2003 a seismic monitoring project at the TVG area was initiated by deploying eight three-component seismic stations some of them equipped with both short-period and broadband sensors. During the 18 months observation period local seismicity mainly consisted of high frequency earthquakes either occurring as isolated events, or as a continuous sequence in the form of spasmodic bursts. Mixed and low frequency events were also present during the same period, even though they occurred only rarely. Arrival times from events with clear P-/S-wave phases were inverted in order to obtain a minimum 1D velocity model with station corrections. Probabilistic nonlinear earthquake locations were calculated for all these events using the newly derived velocity model. Most high frequency seismicity appeared to be concentrated near the areas of hydrothermal activity, forming tight clusters at depths shallower than 4 km. Relative locations, calculated using the double-difference method and utilising catalogue and cross-correlation differential traveltimes, showed insignificant differences when compared to the nonlinear probabilistic locations. In general, seismicity in the TVG area seems to be primarily driven by circulation of hydrothermal fluids as indicated by the occurrence of spasmodic bursts, mixed/low frequency events and a b-value (1.17 ± 0.1) higher than in any other part of Taiwan. These observations, that are similar to those reported in other dormant Quaternary volcanoes, indicate that a magma chamber may still exist beneath TVG and that a future eruption or period of unrest should not be considered unlikely.

  4. Achievements and Planned Programmes of Activities of The Csg.5/6 "geodynamics of Northern Carpathians"

    NASA Astrophysics Data System (ADS)

    Zablotskyj, F.; Tretyak, K.

    Within the programme of the regional group CSG.5/6 "Geodynamics of Northern Carpathians", the following main lines are carried out. (1) Geodetic and geophysical investigations of the recent crustal movements and geophysical analysis of deep struc- ture on the Carpathian geodynamic test field. (2) Subsequent study of geological struc- tures in the region of Northern Carpathians. On the initiative of the Main Astronomical Observatory, the National Space Agency and the Aerogeodetic Enterprise of Ukraine two permanent GPS stations, UZHL and SULP, were being established during last 1.5 years. The first one is situated in the zone of Transcarpathian flexure (Uzhgorod, University) and the second one - in the west of East-European plate (the Precarpathi- ans, Lviv, Polytechnic University). In addition to the long-term project "Restoration of Ukrainian-Polish complex geophysical station at Pip Ivan Mount in Charnohora (Ukrainian Carpathians)", the following actions are planned for 2002-2004. (1) To carry out the complex geodetic, geophysical, geological and geomorphological in- vestigations in this region, which is less studied in comparison with other areas in Carpathians. The comparison of simultaneous appearance of geophysical processes in these regions will allow detect a degree of influence of endogenic, exogenic, and antro- pogenig factors on present day hydro-geological processes in the whole Carpathian region. (2) To create a network of permanent stations for the complex geophysical and geodynamic monitoring, which will include measurements of intensity of Earth's surface deformation field, remote photogrammetric measurements of intensity of de- structive and shift processes, the determination of parameters of gravity and mag- netic fields, seismic and electrometric measurements, spectral analysis of space im- ages for quality and quantity estimations of technogenic and antropogenic activity, generalization of data on evolution and dynamics of river systems and

  5. Bacterial biomass and activity in the marginal ice zone of the northern Barents Sea

    NASA Astrophysics Data System (ADS)

    Tammert, Helen; Olli, Kalle; Sturluson, Maria; Hodal, Helene

    2008-10-01

    Bacteria in the Arctic Waters are well adapted to low temperatures and play a key role in the transformation of organic matter. However, the activity of planktonic bacteria at cellular level remains poorly understood. In this study, we use fluorescent markers (4',6'-diamidino-2-phenylindole (DAPI), 5-cyano-2,3-ditolyl tetrazolium chloride (CTC), Live/Dead BacLight viability kit) to discriminate between bacterial cells with a variety of physiological activities in the 0-200 m water column and sinking particles. During two field studies (July 2003 and 2004), we covered nine stations in the northern Barents Sea. The median bacterial abundance (DAPI staining) in the upper 50 m layer was 0.9×10 6 cells ml -1 (range 0.2-3.2×10 6 cells ml -1) in 2003 and 0.5×10 6 cells ml -1 (range 0.2-1.0×10 6 cells ml -1) in 2004. Bacteria with sufficient electron transport activity to be stained with CTC were on average 10% of the total count and ca. 20% of the total cells had intact cell membranes. In the water column, proxies of substrate availability (POC, PON, chlorophyll a, primary production) and bacterial production (thymidine and leucine uptake) correlated strongly with total bacterial count, CTC-stained cells and cells with 'leaky' membrane (stained with propidium iodine), but not with the concentration of cells with intact cell membrane. Contrary to expectations, the proportion of CTC-stained bacteria was not higher in the sinking particles (captured with sediment traps) compared to the ambient water. However, out of the bacteria with intact cell membranes, a higher proportion scored as CTC positive in the aggregates compared to the ambient water. Bacterial cells with 'leaky' cell membranes formed the largest part of total cell count in all samples, and accumulated in sites with high microbial activity (sinking aggregates, chlorophyll maxima, layers of high primary and bacterial production). We hypothesize that the source of the bacterial cells with 'leaky' cell membranes

  6. Active landsliding and landscape denudation in response to transient tectonic uplift, Northern California.

    NASA Astrophysics Data System (ADS)

    Bennett, G. L.; Roering, J. J.; Miller, S. R.; Kirby, E.; Schmidt, D. A.

    2014-12-01

    The northern Californian Coast ranges present a unique area to study landscape response to transient tectonic uplift. Studies have shown that an increase in uplift may be balanced by the rate of landsliding in settings of steady uplift. However, the landsliding response to transient tectonic uplift remains to be elucidated. The Californian Coast ranges are shaped by the northward migration of the Mendocino Triple Junction (MTJ), which geodynamic modeling suggests produces a transient double-humped uplift field. A major research question is whether we can detect a signature of this transient tectonic uplift in landslide activity and document how the channel network communicates this signal to hillslopes. Using air photos and Worldview imagery, we manually mapped more than 2000 earthflows and debris slides in the Eel and surrounding catchments that span the ~400 km-long region. The velocities of active earthflows were estimated by visually tracking features between images spanning 1993 to 2013. We mapped channel steepness from 10m NED DEMs in Topotoolbox 2 and developed a new tool to automatically define knickpoints along the channel network. Earthflows occur almost exclusively in a band of Franciscan mélange oriented along the MTJ transect whilst debris slides are more evenly distributed by lithology. Both earthflows and debris slides are clustered in the Eel catchment around the proposed uplift peaks and are largely absent outside of these zones. Within these areas of high landslide densities, we observe peaks in active earthflows adjacent to peaks in dormant earthflows to the south, suggesting that the signature of earthflow activity remains for a period of time once the uplift peak has passed. Landslide density, mean landslide area, and earthflow velocity all increase rapidly above threshold values of channel steepness and local relief. In the Eel catchment, where the zone of rapid uplift is commencing, landslides, particularly earth flows, are concentrated

  7. Climate impacts on human settlement and agricultural activities in northern Norway revealed through sediment biogeochemistry

    PubMed Central

    D’Anjou, Robert M.; Bradley, Raymond S.; Balascio, Nicholas L.; Finkelstein, David B.

    2012-01-01

    Disentangling the effects of climate change and anthropogenic activities on the environment is a major challenge in paleoenvironmental research. Here, we used fecal sterols and other biogeochemical compounds in lake sediments from northern Norway to identify both natural and anthropogenic signals of environmental change during the late Holocene. The area was first occupied by humans and their grazing animals at ∼2,250 ± 75 calendar years before 1950 AD (calendar years before present). The arrival of humans is indicated by an abrupt increase in coprostanol (and its epimer epicoprostanol) in the sediments and an associated increase in 5β-stigmastanol (and 5β-epistigmastanol), which resulted from human and animal feces washing into the lake. Human settlement was accompanied by an abrupt increase in landscape fires (indicated by the rise in pyrolytic polycyclic aromatic hydrocarbons) and a decline in woodland (registered by a change in n-alkane chain lengths from leaf waxes), accelerating a process that began earlier in the Holocene. Human activity and associated landscape changes in the region over the last two millennia were mainly driven by summer temperatures, as indicated by independent tree-ring reconstructions, although there were periods when socioeconomic factors played an equally important role. In this study, fecal sterols in lake sediments have been used to provide a record of human occupancy through time. This approach may be useful in many archeological studies, both to confirm the presence of humans and grazing animals, and to distinguish between anthropogenic and natural factors that have influenced the environment in the past. PMID:23185025

  8. Climate impacts on human settlement and agricultural activities in northern Norway: new insights from biogeochemistry

    NASA Astrophysics Data System (ADS)

    D'anjou, R. M.; Bradley, R. S.; Balascio, N. L.; Finkelstein, D. B.

    2012-12-01

    Disentangling the effects of climate change and anthropogenic activities on the environment is a major challenge in paleoenvironmental research. Here, we used fecal sterols and other biogeochemical compounds in lake sediments from northern Norway to identify both natural and anthropogenic signals of environmental change during the late Holocene. The area was first occupied by humans and their grazing animals at ~2,250±75 cal yr BP. The arrival of humans is indicated by an abrupt increase in coprostanol (and its epimer epicoprostanol) in the sediments, and an associated increase in 5β-stigmastanol (and 5β-epistigmastanol), which resulted from human and animal feces washing into the lake. Human settlement was accompanied by an abrupt increase in landscape fires (indicated by the rise in pyrolytic polycyclic aromatic hydrocarbons, PAHs) and a decline in woodland (registered by a change in n-alkane chain lengths from leaf waxes), accelerating a process that began earlier in the Holocene. Human activity and associated landscape changes in the region over the last two millennia were mainly driven by summer temperatures, as indicated by independent tree-ring reconstructions, though there were periods when socio-economic factors played an equally important role. This is the first time that fecal sterols in lake sediments have been used to provide a record of human occupancy through time. This approach may be useful in many archeological studies, both to confirm the presence of humans and grazing animals, and to distinguish between anthropogenic and natural factors that have influenced the environment in the past.

  9. Climate impacts on human settlement and agricultural activities in northern Norway revealed through sediment biogeochemistry

    NASA Astrophysics Data System (ADS)

    D'Anjou, Robert M.; Bradley, Raymond S.; Balascio, Nicholas L.; Finkelstein, David B.

    2012-12-01

    Disentangling the effects of climate change and anthropogenic activities on the environment is a major challenge in paleoenvironmental research. Here, we used fecal sterols and other biogeochemical compounds in lake sediments from northern Norway to identify both natural and anthropogenic signals of environmental change during the late Holocene. The area was first occupied by humans and their grazing animals at ∼2,250 ± 75 calendar years before 1950 AD (calendar years before present). The arrival of humans is indicated by an abrupt increase in coprostanol (and its epimer epicoprostanol) in the sediments and an associated increase in 5β-stigmastanol (and 5β-epistigmastanol), which resulted from human and animal feces washing into the lake. Human settlement was accompanied by an abrupt increase in landscape fires (indicated by the rise in pyrolytic polycyclic aromatic hydrocarbons) and a decline in woodland (registered by a change in n-alkane chain lengths from leaf waxes), accelerating a process that began earlier in the Holocene. Human activity and associated landscape changes in the region over the last two millennia were mainly driven by summer temperatures, as indicated by independent tree-ring reconstructions, although there were periods when socioeconomic factors played an equally important role. In this study, fecal sterols in lake sediments have been used to provide a record of human occupancy through time. This approach may be useful in many archeological studies, both to confirm the presence of humans and grazing animals, and to distinguish between anthropogenic and natural factors that have influenced the environment in the past.

  10. Climate impacts on human settlement and agricultural activities in northern Norway revealed through sediment biogeochemistry.

    PubMed

    D'Anjou, Robert M; Bradley, Raymond S; Balascio, Nicholas L; Finkelstein, David B

    2012-12-11

    Disentangling the effects of climate change and anthropogenic activities on the environment is a major challenge in paleoenvironmental research. Here, we used fecal sterols and other biogeochemical compounds in lake sediments from northern Norway to identify both natural and anthropogenic signals of environmental change during the late Holocene. The area was first occupied by humans and their grazing animals at ∼2,250 ± 75 calendar years before 1950 AD (calendar years before present). The arrival of humans is indicated by an abrupt increase in coprostanol (and its epimer epicoprostanol) in the sediments and an associated increase in 5β-stigmastanol (and 5β-epistigmastanol), which resulted from human and animal feces washing into the lake. Human settlement was accompanied by an abrupt increase in landscape fires (indicated by the rise in pyrolytic polycyclic aromatic hydrocarbons) and a decline in woodland (registered by a change in n-alkane chain lengths from leaf waxes), accelerating a process that began earlier in the Holocene. Human activity and associated landscape changes in the region over the last two millennia were mainly driven by summer temperatures, as indicated by independent tree-ring reconstructions, although there were periods when socioeconomic factors played an equally important role. In this study, fecal sterols in lake sediments have been used to provide a record of human occupancy through time. This approach may be useful in many archeological studies, both to confirm the presence of humans and grazing animals, and to distinguish between anthropogenic and natural factors that have influenced the environment in the past. PMID:23185025

  11. Monitoring exposure of northern cardinals, Cardinalis cardinalis, to cholinesterase-inhibiting pesticides: enzyme activity, reactivations, and indicators of environmental stress.

    PubMed

    Maul, Jonathan D; Farris, Jerry L

    2005-07-01

    Northern cardinals (Cardinalis cardinalis) frequently use agricultural field edges in northeast Arkansas, USA, and may be at risk of exposure to cholinesterase (ChE)-inhibiting pesticides. We monitored northern cardinal exposure to ChE-inhibiting pesticides by comparing plasma total ChE (TChE) activity to reference-derived benchmarks and TChE reactivations. Total ChE and acetylcholinesterase (AChE) were measured for 128 plasma samples from 104 northern cardinals from nine study sites. Of birds sampled from sites treated with ChE-inhibiting pesticides, 4.3% of the samples had TChE activities below the diagnostic threshold (2 standard deviations [SD] below the reference mean) and 8.7% of the samples had TChE reactivations. No difference was found in TChE (p = 0.553) and AChE (p = 0.288) activity between treated and reference sites; however, activity varied among treated sites (p = 0.003). These data do not suggest uniform exposure to individuals, but rather exposure was variable and likely influenced by mitigating factors at individual and site scales. Furthermore, monitoring of TChE reactivation appeared to be a more sensitive indicator of exposure than the diagnostic threshold. Fluctuating asymmetry (FA) was greater at agricultural sites than reference sites (p = 0.016), supporting the hypothesis that FA may be useful for assessing a combination of habitat- and contaminant-related environmental stress. PMID:16050589

  12. Geomorphic signal of active faulting at the northern edge of Lut Block: Insights on the kinematic scenario of Central Iran

    NASA Astrophysics Data System (ADS)

    Calzolari, Gabriele; Della Seta, Marta; Rossetti, Federico; Nozaem, Reza; Vignaroli, Gianluca; Cosentino, Domenico; Faccenna, Claudio

    2016-01-01

    Recent works documented Neogene to Quaternary dextral strike-slip tectonics along the Kuh-e-Sarhangi and Kuh-e-Faghan intraplate strike-slip faults at the northern edge of the Lut Block of Central Iran, previously thought to be dominated by sinistral strike-slip deformation. This work focuses on the evidence of Quaternary activity of one of these fault systems, in order to provide new spatiotemporal constraints on their role in the active regional kinematic scenario. Through geomorphological and structural investigation, integrated with optically stimulated luminescence dating of three generations of alluvial fans and fluvial terraces (at ~53, ~25, and ~6 ka), this study documents (i) the topographic inheritance of the long-term (Myr) punctuated history of fault nucleation, propagation, and exhumation along the northern edge of Lut Block; (ii) the tectonic control on drainage network evolution, pediment formation, fluvial terraces, and alluvial fan architecture; (iii) the minimum Holocene age of Quaternary dextral strike-slip faulting; and (iv) the evidence of Late Quaternary fault-related uplift localized along the different fault strands. The documented spatial and temporal constraints on the active dextral strike-slip tectonics at the northern edge of Lut Block provide new insights on the kinematic model for active faulting in Central Iran, which has been reinterpreted in an escape tectonic scenario.

  13. The detection of DNA-binding proteins by protein blotting.

    PubMed Central

    Bowen, B; Steinberg, J; Laemmli, U K; Weintraub, H

    1980-01-01

    A method, called "protein blotting," for the detection of DNA-binding proteins is described. Proteins are separated on an SDA-polyacrylamide gel. The gel is sandwiched between 2 nitrocellulose filters and the proteins allowed to diffuse out of the gel and onto the filters. The proteins are tightly bound to each filter, producing a replica of the original gel pattern. The replica is used to detect DNA-binding proteins, RNA-binding proteins or histone-binding proteins by incubation of the filter with [32P]DNA, [125I]RNA, or [125I] histone. Evidence is also presented that specific protein-DNA interactions may be detected by this technique; under appropriate conditions, the lac repressor binds only to DNA containing the lac operator. Strategies for the detection of specific protein-DNA interactions are discussed. Images PMID:6243775

  14. Microfluidic Western Blotting of Low-Molecular-Mass Proteins

    PubMed Central

    2015-01-01

    We describe a microfluidic Western blot assay (μWestern) using a Tris tricine discontinuous buffer system suitable for analyses of a wide molecular mass range (6.5–116 kDa). The Tris tricine μWestern is completed in an enclosed, straight glass microfluidic channel housing a photopatterned polyacrylamide gel that incorporates a photoactive benzophenone methacrylamide monomer. Upon brief ultraviolet (UV) light exposure, the hydrogel toggles from molecular sieving for size-based separation to a covalent immobilization scaffold for in situ antibody probing. Electrophoresis controls all assay stages, affording purely electronic operation with no pumps or valves needed for fluid control. Electrophoretic introduction of antibody into and along the molecular sieving gel requires that the probe must traverse through (i) a discontinuous gel interface central to the transient isotachophoresis used to achieve high-performance separations and (ii) the full axial length of the separation gel. In-channel antibody probing of small molecular mass species is especially challenging, since the gel must effectively sieve small proteins while permitting effective probing with large-molecular-mass antibodies. To create a well-controlled gel interface, we introduce a fabrication method that relies on a hydrostatic pressure mismatch between the buffer and polymer precursor solution to eliminate the interfacial pore-size control issues that arise when a polymerizing polymer abuts a nonpolymerizing polymer solution. Combined with a new swept antibody probe plug delivery scheme, the Tris tricine μWestern blot enables 40% higher separation resolution as compared to a Tris glycine system, destacking of proteins down to 6.5 kDa, and a 100-fold better signal-to-noise ratio (SNR) for small pore gels, expanding the range of applicable biological targets. PMID:25268977

  15. Microfluidic Western blotting of low-molecular-mass proteins.

    PubMed

    Gerver, Rachel E; Herr, Amy E

    2014-11-01

    We describe a microfluidic Western blot assay (μWestern) using a Tris tricine discontinuous buffer system suitable for analyses of a wide molecular mass range (6.5-116 kDa). The Tris tricine μWestern is completed in an enclosed, straight glass microfluidic channel housing a photopatterned polyacrylamide gel that incorporates a photoactive benzophenone methacrylamide monomer. Upon brief ultraviolet (UV) light exposure, the hydrogel toggles from molecular sieving for size-based separation to a covalent immobilization scaffold for in situ antibody probing. Electrophoresis controls all assay stages, affording purely electronic operation with no pumps or valves needed for fluid control. Electrophoretic introduction of antibody into and along the molecular sieving gel requires that the probe must traverse through (i) a discontinuous gel interface central to the transient isotachophoresis used to achieve high-performance separations and (ii) the full axial length of the separation gel. In-channel antibody probing of small molecular mass species is especially challenging, since the gel must effectively sieve small proteins while permitting effective probing with large-molecular-mass antibodies. To create a well-controlled gel interface, we introduce a fabrication method that relies on a hydrostatic pressure mismatch between the buffer and polymer precursor solution to eliminate the interfacial pore-size control issues that arise when a polymerizing polymer abuts a nonpolymerizing polymer solution. Combined with a new swept antibody probe plug delivery scheme, the Tris tricine μWestern blot enables 40% higher separation resolution as compared to a Tris glycine system, destacking of proteins down to 6.5 kDa, and a 100-fold better signal-to-noise ratio (SNR) for small pore gels, expanding the range of applicable biological targets. PMID:25268977

  16. Antibody performance in western blot applications is context-dependent.

    PubMed

    Algenäs, Cajsa; Agaton, Charlotta; Fagerberg, Linn; Asplund, Anna; Björling, Lisa; Björling, Erik; Kampf, Caroline; Lundberg, Emma; Nilsson, Peter; Persson, Anja; Wester, Kenneth; Pontén, Fredrik; Wernérus, Henrik; Uhlén, Mathias; Ottosson Takanen, Jenny; Hober, Sophia

    2014-03-01

    An important concern for the use of antibodies in various applications, such as western blot (WB) or immunohistochemistry (IHC), is specificity. This calls for systematic validations using well-designed conditions. Here, we have analyzed 13 000 antibodies using western blot with lysates from human cell lines, tissues, and plasma. Standardized stratification showed that 45% of the antibodies yielded supportive staining, and the rest either no staining (12%) or protein bands of wrong size (43%). A comparative study of WB and IHC showed that the performance of antibodies is application-specific, although a correlation between no WB staining and weak IHC staining could be seen. To investigate the influence of protein abundance on the apparent specificity of the antibody, new WB analyses were performed for 1369 genes that gave unsupportive WBs in the initial screening using cell lysates with overexpressed full-length proteins. Then, more than 82% of the antibodies yielded a specific band corresponding to the full-length protein. Hence, the vast majority of the antibodies (90%) used in this study specifically recognize the target protein when present at sufficiently high levels. This demonstrates the context- and application-dependence of antibody validation and emphasizes that caution is needed when annotating binding reagents as specific or cross-reactive. WB is one of the most commonly used methods for validation of antibodies. Our data implicate that solely using one platform for antibody validation might give misleading information and therefore at least one additional method should be used to verify the achieved data. PMID:24403002

  17. Camera trap records of animal activity prior to a M=7 earthquake in Northern Peru

    NASA Astrophysics Data System (ADS)

    Grant, R.; Raulin, J.; Freund, F.

    2013-12-01

    Earthquake (EQ) preparation is associated with geophysical changes occurring over many scales. Some pre-earthquake (pre-EQ) processes affect the ionosphere, others leave their mark on biota. We report (i) on ionospheric anomalies recorded prior to the M=7 Contamana EQ [1] in North-Eastern Peru, 134 km deep, associated with the subduction of the Nazca plate underneath the Northern Andes, (ii) on changes in animal activity recorded in the Yanachaga National Park, about 320 km from the EQ epicentre, over a 30 day period leading up to the M=7 seismic event. Night-time Very Low Frequency (VLF) phase data were analyzed for the period 01 June to 31 Oct. 2011 using propagation paths passing close to the Yanachaga Park from the NAA emitter (USA) to receivers PIU in Piura and PLO in Lima (Peru). Ionospheric phase perturbations were observed starting 2 weeks before the EQ with periodicities from few tens of secs to few minutes. Animal activity data were obtained by evaluating the images of a cluster of 10 motion-triggered cameras of the Tropical Ecology Assessment and Monitoring Network www.teamnetwork.org. We analyzed 1359 photographic records for the pre-EQ period and 1491 photographic records for a control period with low seismicity. Animal activity started to noticeably decline 3 weeks before the EQ. Different animal species were found to react differently. The number of rodents declined to zero about one week before the EQ and so did the number of tapirs. Armadillos, a burrowing animal, were recorded in larger numbers. Though the armadillos were presumably also flushed out of their holes, they apparently did not hide like the rodents. We discuss the results in the context of recent advances in solid state physics, which provide plausible mechanisms for pre-EQ ionospheric anomalies and for changes in animal behavior. [1] Tavera, H. (2012), Report on the 24 Aug. 2011 M 7.0 Contamana, Peru, Intermediate Depth Earthquake Seismological Research Letters, 83, 1007-1013, doi: 10.1785/0220120005

  18. Active faulting in northern Chile: ramp stacking and lateral decoupling along a subduction plate boundary?

    NASA Astrophysics Data System (ADS)

    Armijo, Rolando; Thiele, Ricardo

    1990-04-01

    Two large features parallel to the coastline of northern Chile have long been suspected to be the sites of young or active deformation: (1) The 700-km long Coastal Scarp, with average height (above sea level) of about 1000 m; (2) The Atacama Fault zone, that stretches linearly for about 1100 km at an average distance of 30-50 km from the coastline. New field observations combined with extensive analysis of aerial photographs demonstrate that both the Coastal Scarp and the Atacama Fault are zones of Quaternary and current fault activity. Little-degraded surface breaks observed in the field indicate that these fault zones have recently generated large earthquakes ( M = 7-8). Normal fault offsets observed in marine terraces in the Coastal Scarp (at Mejillones Peninsula) require tectonic extension roughly orthogonal to the compressional plate boundary. Strike-slip offsets of drainage observed along the Salar del Carmen and Cerro Moreno faults (Atacama Fault system) imply left-lateral displacements nearly parallel to the plate boundary. The left-lateral movement observed along the Atacama Fault zone may be a local consequence of E-W extension along the Coastal Scarp. But if also found everywhere along strike, left-lateral decoupling along the Atacama Fault zone would be in contradiction with the right lateral component of Nazca-South America motion predicted by models of present plate kinematics. Clockwise rotation with left-lateral slicing of the Andean orogen south of the Arica bend is one way to resolve this contradiction. The Coastal Scarp and the Atacama Fault zone are the most prominent features with clear traces of activity within the leading edge of continental South America. The great length and parallelism of these features with the subduction zone suggest that they may interact with the subduction interface at depth. We interpret the Coastal Scarp to be a west-dipping normal fault or flexure and propose that it is located over an east-dipping ramp stack at

  19. Geochemical and sulfur isotope signatures of microbial activity in acidic and sulfuric hot springs, northern Taiwan

    NASA Astrophysics Data System (ADS)

    Wang, P.; Chen, K.; Cheng, T.; Hsieh, H.; Lin, L.

    2009-12-01

    Acidic and sulfuric hot springs are natural habitats for thermophilic sulfur-utilizing microorganisms. Integration of bioenergetic evaluation, molecular analysis and stable isotopic signatures may be able to exhibit a full view of microbial activity in such an extreme environment. Widely distributed hot springs hosted by the Tatung volcano group in northern Taiwan provide a chance to evaluate the interplay between geochemical variation and microbial metabolism especially for sulfur. Several hot spring ponds varying in sizes and geochemical characteristics were studied to reveal the possible control of fluid compositions on microbial metabolisms, and vice versa. Sulfate, sulfide, elemental sulfur and dissolved organic carbon were available in spring water and sediments in the ponds. Dominant microbial metabolisms inferred from the bioenergetic evaluation were aerobic oxidations of various reduced compounds, including elemental sulfur, pyrite, ferrous iron and organic carbon. Sulfate and sulfur reductions were thermodynamically favorable but provided less energy flux, while sulfur disproportionation was thermodynamically incapable. The analyses of 16S rRNA genes extracted from the spring water and sediments indicated that aerobic oxidation of sulfur, hydrogen or organic carbon and anaerobic elemental sulfur reduction were possible metabolisms. Since the major portion of 16S rRNA sequences were affiliated with unclassified environmental sequences, their potential metabolisms remained obscure. Sulfur isotopic compositions of dissolved sulfate, pyrite and elemental sulfur exhibited significant variations among the different hot spring ponds. Apparently, the microbial effects on the sulfur isotopic signatures were various. A disproportionation reaction of volcanic gas was required to account for high sulfur isotope difference between sulfate and reduced sulfur in the large hot ponds. In contrary, abiotic or microbial oxidation of reduced sulfur might be dominant in the

  20. Urban Geocryology: Mapping Urban-Rural Contrasts in Active-Layer Thickness, Barrow Penninsula, Northern Alaska

    NASA Astrophysics Data System (ADS)

    Klene, A. E.; Nelson, F. E.

    2014-12-01

    As development proceeds in the high latitudes, information about interactions between urban influences and the thickness of the active layer above permafrost becomes vital, particularly given the possibility of increasing temperatures accompanying climate change. Permafrost characteristics are often mapped at small geographical scales (i.e., over large areas), at low resolution, and without extensive field validation. Although maps of active-layer thickness (ALT) have been created for areas of relatively undisturbed terrain, this has rarely been done within urbanized areas, even though ALT is a critical factor in the design of roads, buildings, pipelines, and other elements of infrastructure. The need for detailed maps of ALT is emphasized in work on potential hazards in permafrost regions associated with global warming scenarios. Northern Alaska is a region considered to be at moderate to high risk for thaw-induced damage under climatic warming. The Native Village of Barrow (71°17'44"N; 156°45' 59"W), the economic, transportation, and administrative hub of the North Slope Borough, is the northernmost community in the USA, and the largest native settlement in the circum-Arctic. A winter urban heat island in Barrow, earlier snowmelt in the village, and dust deposition downwind of gravel pads and roads are all urban effects that could increase ALT. A recent empirical study documented a 17 to 41 cm difference in ALT between locations in the village of Barrow and surrounding undeveloped tundra, even in similar land-cover classes. We mapped ALT in the Barrow Peninsula, with particular attention to contrasts between the urbanized village and relatively undisturbed tundra in the nearby Barrow Environmental Observatory. The modified Berggren solution, an advanced analytic solution to the general Stefan problem of calculating frost and thaw depth, was used in a geographic context to map ALT over the 150 km² area investigated in the Barrow Urban Heat Island Study. The

  1. Blot overlays with 32P-labeled fusion proteins.

    PubMed

    Zhao, Z; Lim, L; Manser, E

    2001-07-01

    Proteins labeled with 32P can be used as sensitive "prime" in blot overlays to detect binding proteins or domains. Small G-protein Ras can bind GTP with extremely high affinity (Kd approximately 10(-11)-10(-12) M) in the presence of Mg2+. We have taken advantage of this property of Ras to develop a vector that expresses proteins of interest such as glutathione S-transferase (GST)/Ras fusion proteins for noncovalent labeling with [gamma-32P]GTP. The labeling efficiency of this method is >60% and involves a single short incubation step. We have previously identified several binding proteins for the second SH3 domain of the adaptor Nck using this method. Here we illustrate the overlay method using the GST/Ras system and compare results with the SH3 domain labeled by phosphorylation with [gamma-32P]ATP. Both methods are similarly specific and sensitive; however, we show that signals are dependent primarily on GST-mediated probe dimerization. These dimeric probes allow a more stable probe-target complex similar to immunoglobulin interactions, thus significantly improving the sensitivity of the technique. PMID:11403569

  2. Characterization of Nora Virus Structural Proteins via Western Blot Analysis

    PubMed Central

    Ericson, Brad L.; Carlson, Darby J.

    2016-01-01

    Nora virus is a single stranded RNA picorna-like virus with four open reading frames (ORFs). The coding potentials of the ORFs are not fully characterized, but ORF3 and ORF4 are believed to encode the capsid proteins (VP3, VP4a, VP4b, and VP4c) comprising the virion. To determine the polypeptide composition of Nora virus virions, polypeptides from purified virus were compared to polypeptides detected in Nora virus infected Drosophila melanogaster. Nora virus was purified from infected flies and used to challenge mice for the production of antisera. ORF3, ORF4a, ORF4b, and ORF4c were individually cloned and expressed in E. coli; resultant recombinant proteins purified and were used to make monospecific antisera. Antisera were evaluated via Western blot against whole virus particles and Nora virus infected fly lysates. Viral purification yielded two particle types with densities of ~1.31 g/mL (empty particles) and ~1.33 g/mL (complete virions). Comparison of purified virus polypeptide composition to Nora virus infected D. melanogaster lysate showed the number of proteins in infected cell lysates is less than purified virus. Our results suggest the virion is composed of 6 polypeptides, VP3, VP4a, two forms of VP4b, and two forms of VP4c. This polypeptide composition is similar to other small RNA insect viruses. PMID:27298753

  3. Characterization of Nora Virus Structural Proteins via Western Blot Analysis.

    PubMed

    Ericson, Brad L; Carlson, Darby J; Carlson, Kimberly A

    2016-01-01

    Nora virus is a single stranded RNA picorna-like virus with four open reading frames (ORFs). The coding potentials of the ORFs are not fully characterized, but ORF3 and ORF4 are believed to encode the capsid proteins (VP3, VP4a, VP4b, and VP4c) comprising the virion. To determine the polypeptide composition of Nora virus virions, polypeptides from purified virus were compared to polypeptides detected in Nora virus infected Drosophila melanogaster. Nora virus was purified from infected flies and used to challenge mice for the production of antisera. ORF3, ORF4a, ORF4b, and ORF4c were individually cloned and expressed in E. coli; resultant recombinant proteins purified and were used to make monospecific antisera. Antisera were evaluated via Western blot against whole virus particles and Nora virus infected fly lysates. Viral purification yielded two particle types with densities of ~1.31 g/mL (empty particles) and ~1.33 g/mL (complete virions). Comparison of purified virus polypeptide composition to Nora virus infected D. melanogaster lysate showed the number of proteins in infected cell lysates is less than purified virus. Our results suggest the virion is composed of 6 polypeptides, VP3, VP4a, two forms of VP4b, and two forms of VP4c. This polypeptide composition is similar to other small RNA insect viruses. PMID:27298753

  4. Gravity wave activity during stratospheric sudden warmings in the 2007-2008 Northern Hemisphere winter

    NASA Astrophysics Data System (ADS)

    Wang, Ling; Alexander, M. Joan

    2009-09-01

    We use temperature retrievals from the Constellation Observing System for Meteorology, Ionosphere and Climate (COSMIC)/Formosa Satellite Mission 3 (FORMOSAT-3) and Challenging Minisatellite Payload (CHAMP) Global Positioning Satellite (GPS) radio occultation profiles and independent temperature retrievals from the EOS satellite High Resolution Dynamics Limb Sounder (HIRDLS) and Sounding of the Atmosphere using Broadband Emission Radiometry (SABER) aboard the TIMED satellite to investigate stratospheric sudden warming (SSW) events and the accompanying gravity wave (GW) temperature amplitudes in the 2007-2008 Northern Hemisphere winter. We identify four SSW events (including a major one) occurring from late January to late February in 2008. We detect enhanced GW amplitudes in the stratosphere and subdued GW amplitudes in the lower mesosphere during the warming events. The timing of GW enhancement/suppression and warming/cooling events was generally close (within a couple days). We also find that stratospheric GW amplitudes were generally larger at the polar vortex edge and smaller in the vortex core and outside of the vortex and that stratospheric GW amplitudes were generally small over the North Pacific. Using a simplified GW dispersion relation and a GW ray-tracing experiment, we demonstrate that the enhanced GW amplitudes in the stratosphere during SSWs could be explained largely by GW propagation considerations. The existence of GW critical levels (the level at which the background wind is the same as the GW phase speed) near the stratopause during SSWs would block propagation of GWs into the mesosphere and thus could lead to the observed subdued GW activity in the lower mesosphere. Since this is the first study to analyze the COSMIC and CHAMP GPS temperature retrievals up to 60 km in altitude, we compare the GPS analysis with those from HIRDLS and SABER measurements. We find that the temporal variability of zonal mean temperatures derived from the GPS data is

  5. Sinuosity change of the Po River near Cremona (Northern Italy) - a result of neotectonic activity?

    NASA Astrophysics Data System (ADS)

    Petrovszki, Judit; Timár, Gábor

    2010-05-01

    In the map sheets of the Second Military Survey of the Habsburg Empire, Lombardia, Parma, Modena and Venice also can be seen (Timár et al., 2006). This area was surveyed between 1818 and 1829. In these map sheets, we can also follow the river Po from Vaccarizza to the delta. This river reach is about 350 km long. This river reach was digitized and sinuosity values were calculated with different window sizes, and displayed in a spectrum-like diagram (sinuosity spectra; after van Balen et al., 2008). At Cremona, a significante sinuosity change were identified. The sinuosity increasing, and we have high sinuosity values. In the summarizing geological map of Italy (Compagnoni and Calluzzo, 2004), at this place, a tectonic line was identified. So probably this fault line invokes the sinuosity change on the river. The vertical movements indicated on the maps are just the opposite like they would be according to the flume experiments of Ouchi (1985). In the case of the Po River at Cremona, the decrease of the channel slope results higher sinuosity. The reason is that the rate of the slope and water discharge is higher than it is required by the self-organized meandering and the river parameters fell to the range of the unorganized meandering (cf. Timár, 2003). Another possible explanation could be that the northern tributary, the Adda River has significant sediment load that lowers the sinuosity of the trunk river at the confluence. Compagnoni, B., Galluzzo, F. (eds., 2004): Geological Map of Italy. Agenzia per la Protezione dell'Ambiente per I Servizi Tecnici - Dipartimento Difesa del Suolo, Servizio Geologico d'Italia, Rome-Florence-Genoa. Map, scale=1:1250000, especially printed for the 32nd International Geological Congress. Ouchi, S. (1985): Response of alluvial rivers to slow active tectonic movement. Geol. Soc. Am. Bull. 96: 504-515. Timár, G. (2003): Controls on channel sinuosity changes: a case study of the Tisza River, the Great Hungarian Plain. Quaternary

  6. No covariation between the geomagnetic activity and the incidence of acute myocardial infarction in the polar area of northern Sweden.

    PubMed

    Messner, T; Häggström, I; Sandahl, I; Lundberg, V

    2002-05-01

    This study was undertaken to investigate whether there was any relation between the aurora borealis (measured as the geomagnetic activity) and the number of acute myocardial infarctions (AMI) in the northern, partly polar, area of Sweden. The AMI cases were collected from The Northern Sweden MONICA (multinational MONItoring of trends and determinants of CArdiovascular disease) AMI registry between 1985 and 1998, inclusive, and the information on the geomagnetic activity from continuous measurements at the Swedish Institute of Space Physics, Kiruna. In the analyses, both the relation between the individual AMI case and ambient geomagnetic activity, and the relation between the mean daily K index and the daily number of AMI cases were tested. We found no statistically significant relation between the number of fatal or non-fatal AMI cases, the number of sudden deaths or the number of patients with chest pain without myocardial damage, and geomagnetic activity. Our data do not support a relation between the geomagnetic activity and AMI. PMID:12135204

  7. The Chemistry and Biological Activities of Natural Products from Northern African Plant Families: From Taccaceae to Zygophyllaceae.

    PubMed

    Ntie-Kang, Fidele; Njume, Leonel E; Malange, Yvette I; Günther, Stefan; Sippl, Wolfgang; Yong, Joseph N

    2016-04-01

    Traditional medicinal practices have a profound influence on the daily lives of people living in developing countries, particularly in Africa, since the populations cannot generally afford the cost of Western medicines. We have undertaken to investigate the correlation between the uses of plants in Traditional African medicine and the biological activities of the derived natural products, with the aim to validate the use of traditional medicine in Northern African communities. The literature is covered for the period 1959-2015 and part III of this review series focuses on plant families with names beginning with letters T to Z. The authors have focused on curating data from journals in natural products and phytomedicine. Within each journal home page, a query search based on country name was conducted. All articles "hits" were then verified, one at a time, that the species was harvested within the Northern African geographical regions. The current data partly constitutes the bases for the development of the Northern African natural compounds database. The review discusses 284 plant-based natural compounds from 34 species and 11 families. It was observed that the ethnobotanical uses of less than 40 % of the plant species surveyed correlated with the bioactivities of compounds identified. PMID:26931529

  8. Antioxidant Activity, Total Phenolics and Flavonoid Contents of some Edible Green Seaweeds from Northern Coasts of the Persian Gulf

    PubMed Central

    Farasat, Massoumeh; Khavari-Nejad, Ramazan-Ali; Nabavi, Seyed Mohammad Bagher; Namjooyan, Foroogh

    2014-01-01

    The antioxidant activity, contents of total phenolics and flavonoids were quantified in the methanolic extracts of four Ulva species (Ulva clathrata (Roth) C.Agardh, Ulva linza Linnaeus, Ulva flexuosa Wulfen and Ulva intestinalis Linnaeus) grown at different parts of northern coasts of the Persian Gulf in south of Iran. The seaweeds were collected from Dayyer, Taheri and Northern Ouli coasts in April 2011. Methanolic extracts of the seaweeds were assessed for their antioxidant activity using DPPH radical scavenging assay and was performed in a microplate reader. All species exhibited a DPPH radical scavenging activity, and among the species, Ulva clathrata demonstrated greater antioxidant potential with a low IC50 (0.881 mg mL-1) in comparison with those of the other species. Also the highest phenolic content (5.080 mg GAE g-1) and flavonoid content (33.094 mg RE g-1) were observed in U.clathrata. Total phenolic and flavonoid contents showed positive correlations with the DPPH radical scavenging activity (p < 0.01) and negative correlations with IC50 (p < 0.01).The results suggest that these edible green seaweeds possess antioxidant potential which could be considered for future applications in medicine, dietary supplements ,cosmetics or food industries. PMID:24734068

  9. Qualitative and quantitative evaluation of Simon™, a new CE-based automated Western blot system as applied to vaccine development.

    PubMed

    Rustandi, Richard R; Loughney, John W; Hamm, Melissa; Hamm, Christopher; Lancaster, Catherine; Mach, Anna; Ha, Sha

    2012-09-01

    Many CE-based technologies such as imaged capillary IEF, CE-SDS, CZE, and MEKC are well established for analyzing proteins, viruses, or other biomolecules such as polysaccharides. For example, imaged capillary isoelectric focusing (charge-based protein separation) and CE-SDS (size-based protein separation) are standard replacement methods in biopharmaceutical industries for tedious and labor intensive IEF and SDS-PAGE methods, respectively. Another important analytical tool for protein characterization is a Western blot, where after size-based separation in SDS-PAGE the proteins are transferred to a membrane and blotted with specific monoclonal or polyclonal antibodies. Western blotting analysis is applied in many areas such as biomarker research, therapeutic target identification, and vaccine development. Currently, the procedure is very manual, laborious, and time consuming. Here, we evaluate a new technology called Simple Western™ (or Simon™) for performing automated Western analysis. This new technology is based on CE-SDS where the separated proteins are attached to the wall of capillary by a proprietary photo activated chemical crosslink. Subsequent blotting is done automatically by incubating and washing the capillary with primary and secondary antibodies conjugated with horseradish peroxidase and detected with chemiluminescence. Typically, Western blots are not quantitative, hence we also evaluated the quantitative aspect of this new technology. We demonstrate that Simon™ can quantitate specific components in one of our vaccine candidates and it provides good reproducibility and intermediate precision with CV <10%. PMID:22965727

  10. A false alarm based on electrical activity recorded at a VAN-Station in northern Greece in December 1990

    NASA Astrophysics Data System (ADS)

    Drakopoulos, John; Stavrakakis, George N.

    A VAN-prediction was announced on January 6, 1991, through the French newspaper “Le Monde” and on January 8-10, 1991, through Greek newspapers and TV stations. We evaluate this prediction on the basis of a letter which was sent by Prof. Varotsos (without date) to the Greek Minister of Public Works, and by considering previous VAN-publications as well as recent seismological data for the candidate regions. We conclude that what was observed at ASS station (northern Greece) on December 31, 1990, was not SES-activity but another disturbance or noise.

  11. Lack of Active Onchocerca volvulus Transmission in the Northern Chiapas Focus of Mexico

    PubMed Central

    Rodríguez-Pérez, Mario A.; Unnasch, Thomas R.; Domínguez-Vázquez, Alfredo; Morales-Castro, Alba L.; Richards, Frank; Peña-Flores, Graciela P.; Orozco-Algarra, María Eugenia; Prado-Velasco, Gibert

    2010-01-01

    The northern Chiapas onchocerciasis focus has undergone 11 years of ivermectin mass treatment. No evidence of microfilariae in the cornea and/or anterior chamber of the eye or in skin snips was seen in residents examined in 2006 in two sentinel communities (upper limit of the 95% confidence interval [UL 95% CI] = 0.5% and 0.3%, respectively). In children 10 and under, 0 of 305 were found to harbor antibodies to Ov16, a marker of parasite exposure; 0 of 4,400 Simulium ochraceum s.l. collected in 2005 contained parasite DNA, giving an UL 95% CI for the infective rate of 0.9/2,000, and an UL 95% CI of the seasonal transmission potential of 1.2 L3/person. These data, assumed to be representative of the focus as a whole, suggest that there is no ongoing transmission of Onchocerca volvulus in the northern Chiapas focus. Community-wide treatments with ivermectin were halted in 2008, and a post-treatment surveillance phase was initiated. PMID:20595471

  12. Immunodiagnosis of Echinococcus Infections: Confirmatory Testing and Species Differentiation by a New Commercial Western Blot

    PubMed Central

    Liance, Martine; Janin, Veronique; Bresson-Hadni, Solange; Vuitton, Dominique-Angele; Houin, Rene; Piarroux, Renaud

    2000-01-01

    The Echinococcus Western Blot IgG (LDBIO Diagnostics, Lyon, France), using a whole larval antigen from Echinococcus multilocularis, was evaluated for serodiagnosis and differentiation between two human parasitic infections of worldwide importance: cystic echinococcosis, due to Echinococcus granulosus, and alveolar echinococcosis, due to E. multilocularis. Fifty and 61 serum samples from patients with cystic and alveolar echinococcosis, respectively, were used for assessing diagnostic sensitivity. The sensitivity of the assay was compared with those of screening tests used for these applications. Sera used for assessing cross-reactivities were from 154 patients with other diseases, either parasitic or not. The assay allowed the detection of serum immunoglobulin G antibodies in 97% of Echinococcus-infected patients. It had a higher sensitivity than screening assays for the detection for each echinococcosis. The assay allowed us to correctly distinguish between E. granulosus- and E. multilocularis-infected patients in 76% of cases. It did not allow us to distinguish active from inactive forms of both echinococcoses. The occurrence of cross-reactivities with neurocysticercosis indicates the necessity for retesting sera with species-specific antigens, for rare patients with neurologic disorders. This study shows the usefulness of the commercially available Echinococcus Western Blot IgG for the serological confirmation of human echinococcosis. PMID:11015390

  13. Relationship Between Ecosystem Productivity and Photosynthetically Active Radiation for Northern Peatlands

    NASA Technical Reports Server (NTRS)

    Frolking, S. E.; Bubier, J. L.; Moore, T. R.; Ball, T.; Bellisario, L. M.; Bhardwaj, A.; Carroll, P.; Crill, P. M.; Lafleur, P. M.; McCaughey, J. H.; Roulet, N. T.; Suyker, A. E.; Verma, S. B.; Waddington, J. M.; Whiting, G. J.

    1998-01-01

    We analyzed the relationship between net ecosystem exchange of carbon dioxide (NEE) and irradiance (as photosynthetic photon flux density or PPFD), using published and unpublished data that have been collected during midgrowing season for carbon balance studies at seven peatlands in North America and Europe, NEE measurements included both eddy-correlation tower and clear, static chamber methods, which gave very similar results. Data were analyzed by site, as aggregated data sets by peatland type (bog, poor fen, rich fen, and all fens) and as a single aggregated data set for all peatlands. In all cases, a fit with a rectangular hyperbola (NEE = alpha PPFD P(sub max)/(alpha PPFD + P(sub max) + R) better described the NEE-PPFD relationship than did a linear fit (NEE = beta PPFD + R). Poor and rich fens generally had similar NEE-PPFD relationships, while bogs had lower respiration rates (R = -2.0 micro mol m(exp -2) s(exp -1) for bogs and -2.7 micro mol m(exp -2) s(exp -1)) for fens) and lower NEE at moderate and high light levels (P(sub max)= 5.2 micro mol m(exp -2) s(exp -1) for bogs and 10.8 micro mol m(exp -2) s(exp -1) for fens). As a single class, northern peatlands had much smaller ecosystem respiration (R = -2.4 micro mol m(exp -2) s(exp -1)) and NEE rates (alpha = 0.020 and P(sub max)= 9.2 micro mol m(exp -2) s(exp -1)) than the upland ecosystems (closed canopy forest, grassland, and cropland). Despite this low productivity, northern peatland soil carbon pools are generally 5-50 times larger than upland ecosystems because of slow rates of decomposition caused by litter quality and anaerobic, cold soils.

  14. Structure of the active rift zone and margins of the northern Imperial Valley from Salton Seismic Imaging Project (SSIP) data

    NASA Astrophysics Data System (ADS)

    Livers, A.; Han, L.; Delph, J. R.; White-Gaynor, A. L.; Petit, R.; Hole, J. A.; Stock, J. M.; Fuis, G. S.

    2012-12-01

    First-arrival refraction data were used to create a seismic velocity model of the upper crust across the actively rifting northern Imperial Valley and its margins. The densely sampled seismic refraction data were acquired by the Salton Seismic Imaging Project (SSIP) , which is investigating rift processes in the northern-most rift segment of the Gulf of California extensional province and earthquake hazards at the southern end of the San Andreas Fault system. A 95-km long seismic line was acquired across the northern Imperial Valley, through the Salton Sea geothermal field, parallel to the five Salton Butte volcanoes and perpendicular to the Brawley Seismic Zone and major strike-slip faults. Nineteen explosive shots were recorded with 100 m seismometer spacing across the valley and with 300-500 m spacing into the adjacent ranges. First-arrival travel times were picked from shot gathers along this line and a seismic velocity model was produced using tomographic inversion. Sedimentary basement and seismic basement in the valley are interpreted to be sediment metamorphosed by the very high heat flow. The velocity model shows that this basement to the west of the Brawley Seismic Zone is at ~4-km depth. The basement shallows to ~2-km depth in the active geothermal field and Salton Buttes volcanic field which locally coincide with the Brawley Seismic Zone. At the eastern edge of the geothermal field, the basement drops off again to ~3.5-km depth. The eastern edge of the valley appears to be fault bounded by the along-strike extension of the Sand Hills Fault, an inactive strike-slip fault. The seismic velocities to the east of the fault correspond to metamorphic rock of the Chocolate Mountains, different from the metamorphosed basement in the valley. The western edge of the valley appears to be fault bounded by the active Superstition Hills Fault. To the west of the valley, >4-km deep valley basement extends to the active Superstition Hills Fault. Basement then shallows

  15. Barriers and Facilitators to Being Physically Active on a Rural U.S. Northern Plains American Indian Reservation

    PubMed Central

    Jahns, Lisa; McDonald, Leander R.; Wadsworth, Ann; Morin, Charles; Liu, Yan

    2014-01-01

    The objective of the present study was to identify barriers to and facilitators of physical activity among American Indian adults living on a rural, U.S. Northern Plains reservation using the nominal group technique (NGT). NGT is a method of data generation and interpretation that combines aspects of qualitative (free generation of responses) and quantitative (systematic ranking of responses) methodologies. Adults participated in one of two NGT sessions asking about either barriers to (n = 6), or facilitators of (n = 5), being physically active. Participants nominated and ranked 21 barriers and 18 facilitators. Barriers indicated lack of knowledge of how to fit physical activity into a daily schedule, work, caring for family members, and prioritizing sedentary pursuits. Other responses included environmental barriers such as lack of access and transportation to a gym, unsafe walking conditions, and inclement weather. Facilitators to following recommendations included knowledge of health benefits of physical activity and the perception of physical activity as enjoyable, including feeling good when working out. Environmental facilitators included being outdoors walking and biking as well as parks and exercise facilities. Responses provided direction for locally designed community-based programs to promote facilitators and decrease barriers to individual’s engagement in physical activity. PMID:25421064

  16. Possible Future Changes in Permafrost and Active Layer Thickness in Northern Eurasia and their Relation to Permafrost Carbon Pool

    NASA Astrophysics Data System (ADS)

    Marchenko, S. S.; Romanovsky, V. E.; Chapman, W. L.; Walsh, J. E.

    2012-12-01

    Recent observations indicate a warming of permafrost in many northern regions with the resulting degradation of ice-rich and carbon-rich permafrost. Permafrost temperature has increased by 1 to 3 deg C in northern Eurasia during the last 30 years. To assess possible changes in the permafrost thermal state and the active layer thickness we implemented the GIPL2 (Geophysical Institute Permafrost Lab) transient model for the entire Northern Eurasia for the 1981-2100 time period. Input parameters to the model are spatial datasets of mean monthly air temperature, snow properties or SWE, prescribed vegetation and thermal properties of the multilayered soil column, and water content. The climate scenario was derived from an ensemble of five IPCC Global Circulation Models (GCM) ECHAM5, GFDL21, CCSM, HADcm and CCCMA. The outputs from these five models have been scaled down to 25 km spatial resolution with monthly temporal resolution, based on the composite (mean) output of the five models, using the IPCC SRES A1B CO2 emission scenario through the end of current century. Historic ground temperature measurements in shallow boreholes (3.2 m in depth) from more than 120 weather stations located within the continuous, discontinuous, and sporadic permafrost zones were available for the initial model validation and calibration. To prescribe the thermal properties we used the map of soil characteristics for whole of Russia (Stolbovoi & Savin, 2002) and the map of Soil Carbon Pools, CO2 and CH4 emissions (Tarnocai et al., 2009) and also the soil structure descriptions available for some locations. We estimated dynamics of the seasonally thawed volume of soils within the two upper meters for the entire North Eurasia. The model results indicate 1,200 km3 of seasonally unfrozen soils within the two upper meters within 10,800,000 km2 of northern Eurasian permafrost domain during the last two decades of the 20th century. Our projections have shown that unfrozen volume of soil within two

  17. The upper Pleistocene on the northern face of the Guadarrama Mountains (central Spain): Palaeoclimatic phases and glacial activity

    NASA Astrophysics Data System (ADS)

    Bullón, Teresa

    2016-09-01

    The present paper provides new information on Pleistocene glacial activity in a mountainous area of the Iberian Central System. A sediment analysis associated with Pleistocene modelling was carried out using: (1) granulometric and morphometric procedures, (2) quartz grain microtexture techniques (SEM) to discriminate between glacial and no glacial origins of sediments, (3) clay X-ray diffraction study to determine intra-Pleistocene climate variability, and (4) optically stimulated luminescence (OSL) absolute dating. The results show that the sediments were formed in two different phases associated with glacial dynamics, one of them was 35-30 ky BP and another was 25-20 ky BP, separated by a short intermediate warm-wet period. Identification of glacial phenomena is new for the northern slopes of the Guadarrama Mountains (facing the north Meseta, Duero basin), although they are not unusual within the general context of the Iberian Central System. From the data provided, we deduce that glaciation in these mountains was much more intense and widespread than had previously been thought because, on the northern slopes, glaciers occupied large areas reaching the base of the mountains. The evidence favours new interpretations of Pleistocene morphology in the centre of the Iberian Peninsula and, by extension, on the southwestern edge of Europe; it also highlights the sensitivity of mountainous areas with regard to Quaternary climate changes.

  18. Effects of temperature and rainfall on the activity and dynamics of host-seeking Aedes albopictus females in northern Italy.

    PubMed

    Roiz, David; Rosà, Roberto; Arnoldi, Daniele; Rizzoli, Annapaola

    2010-10-01

    The Asian tiger mosquito, Aedes albopictus, has colonized nearly all the regions of Italy as well as other areas of Europe. During the summer of 2007 the tiger mosquito was responsible for an outbreak of Chikungunya in Italy, when this virus was brought in by a tourist of Indian origin returning from an endemic area. To increase the knowledge of tiger mosquito population dynamics, a survey was carried out from April to November 2008 in the municipalities of Arco and Riva del Garda (northern Italy) through a Biogents Sentinel™ (BG)-trap sampling. In particular, the aim of the study was to evaluate the influence of temperature and rainfall on the activity and dynamics of A. albopictus host-seeking females. The seasonal emergence of host-seeking females was strongly influenced by the minimum temperature, and a lower threshold of 13°C was identified. In addition, the threshold for the end of adult activity was found at a minimum temperature of 9°C. Host-seeking female abundance was positively affected by the accumulated temperatures over the period 3 and 4 weeks before the sampling week, possibly as a consequence of the positive effect of accumulated temperatures on larval density. Instead, accumulated precipitation over 1-4 weeks before sampling was negatively correlated with host-seeking female abundance. Finally, the activity of host-seeking females, estimated by the weekly increment in female abundance, was positively affected by the total abundance of females and by mean weekly temperatures. Our study provides useful information for predicting the dynamics of host-seeking Ae. albopictus females in northern Italy and for designing control strategies for preventing arbovirus outbreaks in areas colonized by Ae. albopictus. PMID:20059318

  19. Contribution of geophysical data in delineating the active subsurface structures along the southeastern Mediterranean and northern Egypt

    NASA Astrophysics Data System (ADS)

    Saleh, Salah; Elwan, Mostafa

    2016-04-01

    The solution obtained with 3D Euler deconvolution gives better-focused depth estimates, which are closer to the real position of sources; the results presented here can be used to constrain depth to active crustal structures (fault system, magmatic activity and subduction zones) for southeastern Mediterranean and northern Egypt. The results indicated that the area was affected by sets of structural systems, which primarily trended in the NE-SW to NNE-SSW and NW-SE, directions. The estimated shallow Bouguer results (for SI dikes, sills and flows models) shows an abrupt change depth values (1-8 km) almost clustered along the eastern segment of the Cyprian arc, Indicates continuation of the ophiolite at a depth below younger sediments of the Latakia and southern Antalya Basins. This means that, the Eratosthenes Seamount block is in the process of dynamically subsiding beneath Cyprus to the north and thrusted onto the Levantine Basin to the south. Nevertheless, the Cyprian arc region is dominated by several compressional shallow fault systems (0-4 km) trended E-W to WNW direction, which may initiated due to the northward-directed movement of Africa and ongoing subducting the Levant oceanic segment beneath the Tauric arc south of Cyprus. However, the deep magnetic depths (28 km, for SI of dipole model) correspond more closely to the Moho depth in the oceanic regions of marine part, with a high proportion of Younger Granites (Eratosthenes Seamount, Florence Rise, South Cyprus, eastern part of Levantine Basin and north Nile Cone) which are accompanied with low heat flow values. We can state that the clustering of most shallow earthquakes along this structures (especially beneath southern part of Florence Rise) may most likely be attributed to the active mantle upwelling (volcanic earthquakes), which are ultimately related to volcanic processes. Whereas, the Moho depth reaches to 35 km beneath the continental regions of Nile Delta basins and northern Sinai, which are

  20. Hydrothermal Activity Along Multiple Ridge Segments of the Northern Central Indian Ridge, 8°-17°S

    NASA Astrophysics Data System (ADS)

    Son, J.; Kim, J.; Pak, S.; Son, S.; Moon, J.; Baker, E. T.

    2012-12-01

    We report the first systematic hydrothermal plume surveys conducted on the northern Central Indian Ridge (CIR, 8°-17°S), a slow spreading ridge with rates between ~35 and 40 mm/yr, during the CIR research program of KORDI between 2009 and 2011. Using a combined CTD/Miniature Autonomous Plume Recorder (MAPR) package we occupied 208 vertical casts and 82 tows along seven segments of the CIR totaling ~700 km of ridge length to estimate the frequency of hydrothermal activity on this slow-spreading ridge. Evidence for hydrothermal activity was found on each of the seven segments, with most plumes found between 3000 and 3500 m. Using only stations within the rift valley, the estimated value of plume incidence (ph=0.19) coincides with the global trend between the spatial density of hydrothermal plumes and full-spreading rate (an indicator of magmatic budget). However, there are also indications of possible discharge from hydrothermal activity or serpentinization from the ridge flanks (possible ocean core complexes), as has been observed along the Mid-Atlantic Ridge. For example, some sites show methane anomalies unaccompanied by any optical anomaly. Our preliminary results support the increasing role of tectonic control on hydrothermal activity as spreading rates decrease. Further examination of the plume signals, combined with chemical composition of sampled water and geological data, will provide valuable insights into hydrothermal activity on slow spreading ridges.

  1. Using the Landsat Thematic Mapper to detect and monitor active volcanoes - An example from Lascar volcano, northern Chile

    NASA Astrophysics Data System (ADS)

    Francis, P. W.; Rothery, D. A.

    1987-07-01

    The Landsat Thematic Mapper (TM) offers a means of detecting and monitoring thermal features of active volcanoes. Using the TM, a prominent thermal anomaly has been discovered on Lascar volcano, northern Chile. Data from two short-wavelength infrared channels of the TM show that material within a 300-m-diameter pit crater was at a temperature of at least 380 C on two dates in 1985. The thermal anomaly closely resembles in size and radiant temperature the anomaly over the active lava lake at Erta'ale in Ethiopia. An eruption took place at Lascar on Sept. 16, 1986. TM data acquired on Oct. 27, 1986, revealed significant changes within the crater area. Lascar is in a much more active state than any other volcano in the central Andes, and for this reason it merits further careful monitoring. Studies show that the TM is capable of confidently identifying thermal anomalies less than 100 m in size, at temperatures of above 150 C, and thus it offers a valuable means of monitoring the conditions of active or potentially active volcanoes, particularly those in remote regions.

  2. Using the Landsat Thematic Mapper to detect and monitor active volcanoes - An example from Lascar volcano, northern Chile

    NASA Technical Reports Server (NTRS)

    Francis, P. W.; Rothery, D. A.

    1987-01-01

    The Landsat Thematic Mapper (TM) offers a means of detecting and monitoring thermal features of active volcanoes. Using the TM, a prominent thermal anomaly has been discovered on Lascar volcano, northern Chile. Data from two short-wavelength infrared channels of the TM show that material within a 300-m-diameter pit crater was at a temperature of at least 380 C on two dates in 1985. The thermal anomaly closely resembles in size and radiant temperature the anomaly over the active lava lake at Erta'ale in Ethiopia. An eruption took place at Lascar on Sept. 16, 1986. TM data acquired on Oct. 27, 1986, revealed significant changes within the crater area. Lascar is in a much more active state than any other volcano in the central Andes, and for this reason it merits further careful monitoring. Studies show that the TM is capable of confidently identifying thermal anomalies less than 100 m in size, at temperatures of above 150 C, and thus it offers a valuable means of monitoring the conditions of active or potentially active volcanoes, particularly those in remote regions.

  3. Reexamination of alcohol dehydrogenase structural mutants in Drosophila using protein blotting

    SciTech Connect

    Hollocher, H.; Place, A.R.

    1987-06-01

    Using protein blotting and an immuno-overlay procedure, the authors have reexamined the cross-reacting material produced by ADH null-activity mutants generated with ethyl methanesulfonate (EMS). Of the 13 mutants, 11 have an immunodetectable polypeptide of wild-type size. The native and urea denatured isoelectric points (pI) establish that 7 of 13 of the mutations have no effect on protein charge. The electrophoretic mobilities of each variant on increasing percent acrylamide gels (Ferguson analysis), reveal that 9 of the 11 immunodetectable mutations have retained the ability form dimers under native conditions. None of the inactive mutant proteins has the ability to form the adduct-bound isozyme. The authors have found no correlation between protein pI and i vivo stability. The observed frequencies of specific charge class alterations do not dispute the propensity of G:A transitions previously found for EMS mutagenesis.

  4. Evidence for a weakening relationship between interannual temperature variability and northern vegetation activity.

    PubMed

    Piao, Shilong; Nan, Huijuan; Huntingford, Chris; Ciais, Philippe; Friedlingstein, Pierre; Sitch, Stephen; Peng, Shushi; Ahlström, Anders; Canadell, Josep G; Cong, Nan; Levis, Sam; Levy, Peter E; Liu, Lingli; Lomas, Mark R; Mao, Jiafu; Myneni, Ranga B; Peylin, Philippe; Poulter, Ben; Shi, Xiaoying; Yin, Guodong; Viovy, Nicolas; Wang, Tao; Wang, Xuhui; Zaehle, Soenke; Zeng, Ning; Zeng, Zhenzhong; Chen, Anping

    2014-01-01

    Satellite-derived Normalized Difference Vegetation Index (NDVI), a proxy of vegetation productivity, is known to be correlated with temperature in northern ecosystems. This relationship, however, may change over time following alternations in other environmental factors. Here we show that above 30°N, the strength of the relationship between the interannual variability of growing season NDVI and temperature (partial correlation coefficient RNDVI-GT) declined substantially between 1982 and 2011. This decrease in RNDVI-GT is mainly observed in temperate and arctic ecosystems, and is also partly reproduced by process-based ecosystem model results. In the temperate ecosystem, the decrease in RNDVI-GT coincides with an increase in drought. In the arctic ecosystem, it may be related to a nonlinear response of photosynthesis to temperature, increase of hot extreme days and shrub expansion over grass-dominated tundra. Our results caution the use of results from interannual time scales to constrain the decadal response of plants to ongoing warming. PMID:25318638

  5. Studies of the Northern Alaskan Coastal System: Ongoing project work and synthesis activities

    NASA Astrophysics Data System (ADS)

    Douglas, T. A.; Sturm, M.; Ashjian, C. J.; Jorgensen, T.; Oechel, W. C.; Ping, C.; Rhew, R. C.; Stieglitz, M.

    2006-12-01

    Six ongoing projects focus on a better understanding of processes occurring along the Arctic Alaskan Coast. These projects, grouped as "Studies of the Northern Alaskan Coastal System", or SNACS, combine field, laboratory, modeling and human dimensions research. They include: 1) an investigation of climate variability, ocean processes, sea ice, bowhead whales, and Inupiat subsistence whaling, 2) research on the impact of variability within the ocean and atmosphere on terrestrial fluxes of carbon dioxide, dissolved organic matter and energy, 3) an inventory and description of soil organic carbon fluxes and ground ice in the coastal environment, 4) a determination of whether arctic coastal terrestrial ecosystems are significant sources or sinks of atmospheric methyl halides, chloroform and methane, 5) development of generalized discharge- constituent relationships for arctic basins, and 6) an investigation of the processes controlling mercury deposition to the coastal system. Three broad themes unite the projects: 1) nutrient fluxes from rivers and shoreline erosion in the Arctic coastal zone, 2) impacts of cryospheric changes on the Alaskan Arctic Coast, and 3) potential rapid regime shifts controlled by atmospheric and meteorological processes that could affect the Alaskan Arctic Coast. Warming of the Arctic, particularly its impact on sea ice and nutrient transport in arctic rivers is already affecting fundamental coastal system processes. The six SNACS projects are helping to understand how these impacts will evolve and what their ramifications will be both within and outside of the Arctic.

  6. Sedimentology of seismo-turbidites off the Cascadia and northern California active tectonic continental margins, Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Gutierrez Pastor, Julia; Nelson, Hans; Goldfinger, Chris; Escutia, Carlota

    2013-04-01

    Holocene turbidites from turbidite channel systems along the active tectonic continental margins of the Cascadia subduction zone (offshore Vancouver Island to Mendocino Triple Junction) and the northern San Andreas Transform Fault (the Triple Junction to San Francisco Bay), have been analyzed for sedimentologic features related to their seismic origin. Centimeter thick silt/sand beds (turbidite base) capped by mud layers (turbidite tail) and interbedded with hemipelagic silty clay intervals with high biogenic content have been characterized by visual core descriptions, grain-size analysis, X-ray radiographs and physical properties. Along the northern California margin in upstream single tributary canyons and channels, most turbidites are uni-pulsed (classic fining up) whereas downstream below multiple tributary canyon and channel confluences, most deposits are stacked turbidites. Because each set of stacked turbidites has no hemipelagic sediment between each turbidite unit and each unit has a distinct mineralogy from a different tributary canyon, we interpret that a stacked turbidite is deposited by several coeval turbidity currents fed by multiple tributary canyons and channels with synchronous triggering from a single San Andreas Fault earthquake. The Cascadia margin is characterized by individual multi-pulsed turbidites that contain multiple coarse-grained sub-units without hemipelagic sediment between pulses. Because the number and character of multiple coarse-grained pulses for each correlative multi-pulsed turbidite is almost always constant both upstream and downstream in different channel systems for 600 km along the margin,we interpret that the earthquake shaking or aftershock signature is usually preserved, for the much stronger Cascadia (≥9 Mw) compared to weaker California (≥8Mw) earthquakes, which result in upstream uni-pulsed turbidites and downstream stacked turbidites. Consequently, both the strongest (≥9 Mw) great earthquakes and downstream

  7. Unusual Polar Activity of the Sun in the Northern Hemisphere and Its Implications for Solar Cycle 25

    NASA Astrophysics Data System (ADS)

    Gopalswamy, Nat; Masuda, Satoshi; Yashiro, Seiji; Akiyama, Sachiko; Shibasaki, Kiyoto

    2016-07-01

    Polar field strength in one solar cycle is known to indicate the strength (e.g., Sunspot number) and phase of the next cycle. In particular the polar field strength (or its proxies such as the polar coronal hole area and microwave polar brightness) during the minimum phase of a given cycle seem to be well correlated with the maximum sunspot number of the next cycle. Polar prominence eruptions and coronal mass ejections have also been found to be indicators of low polar field; their cessation signals the time of polarity reversal. While these indicators are present in the current cycle, significant differences are found regarding the phase lag between the two hemispheres and the duration of polar eruptions. We use data from the Nobeyama Radioheliograph, the Solar Dynamics Observatory, SOLIS, and Wilcox Solar Observatory to highlight these differences. We find that the north polar region of the Sun has near-zero field strength for more than three years. This is unusually long and caused by surges of both polarities heading toward the north pole that prevent the buildup of the polar field. This seems to be due to anti-Hale active regions that appeared around the 2012 peak sunspot activity in the northern hemisphere. The unusual condition is consistent with (i) the continued high-latitude prominence eruption, (ii) the extended period of high tilt angle of the heliospheric current sheet, (iii) the weak microwave polar brightness, and (iv) the lack of north polar coronal hole. On the other hand, the south polar field has started building up and the coronal hole has appeared in early 2015 because of large active regions of the correct tilt in the southern hemisphere during the 2014 peak of sunspot activity. The extended period of near-zero field in the north polar region should result in very weak and delayed sunspot activity in the northern hemisphere in cycle 25. On the other hand the south polar field has already increased significantly, suggesting that the activity in

  8. Timely detection of localized excess influenza activity in Northern California across patient care, prescription, and laboratory data.

    PubMed

    Greene, Sharon K; Kulldorff, Martin; Huang, Jie; Brand, Richard J; Kleinman, Kenneth P; Hsu, John; Platt, Richard

    2011-02-28

    Timely detection of clusters of localized influenza activity in excess of background seasonal levels could improve situational awareness for public health officials and health systems. However, no single data type may capture influenza activity with optimal sensitivity, specificity, and timeliness, and it is unknown which data types could be most useful for surveillance. We compared the performance of 10 types of electronic clinical data for timely detection of influenza clusters throughout the 2007/08 influenza season in northern California. Kaiser Permanente Northern California generated zip code-specific daily episode counts for: influenza-like illness (ILI) diagnoses in ambulatory care (AC) and emergency departments (ED), both with and without regard to fever; hospital admissions and discharges for pneumonia and influenza; antiviral drugs dispensed (Rx); influenza laboratory tests ordered (Tests); and tests positive for influenza type A (FluA) and type B (FluB). Four credible events of localized excess illness were identified. Prospective surveillance was mimicked within each data stream using a space-time permutation scan statistic, analyzing only data available as of each day, to evaluate the ability and timeliness to detect the credible events. AC without fever and Tests signaled during all four events and, along with Rx, had the most timely signals. FluA had less timely signals. ED, hospitalizations, and FluB did not signal reliably. When fever was included in the ILI definition, signals were either delayed or missed. Although limited to one health plan, location, and year, these results can inform the choice of data streams for public health surveillance of influenza. PMID:21312219

  9. Active deformation and shallow structure of the Wagner, Consag, and Delfín Basins, northern Gulf of California, Mexico

    NASA Astrophysics Data System (ADS)

    Persaud, Patricia; Stock, Joann M.; Steckler, Michael S.; MartíN-Barajas, Arturo; Diebold, John B.; GonzáLez-FernáNdez, Antonio; Mountain, Gregory S.

    2003-07-01

    Oblique rifting began synchronously along the length of the Gulf of California at 6 Ma, yet there is no evidence for the existence of oceanic crust or a spreading transform fault system in the northern Gulf. Instead, multichannel seismic data show a broad shallow depression, ˜70 × 200 km, marked by active distributed deformation and six ˜10-km-wide segmented basins lacking well-defined transform faults. We present detailed images of faulting and magmatism based on the high resolution and quality of these data. The northern Gulf crust contains a dense (up to 18 faults in 5 km) complex network of mainly oblique-normal faults, with small offsets, dips of 60-80° and strikes of N-N30°E. Faults with seafloor offsets of tens of meters bound the Lower and two Upper Delfín Basins. These subparallel basins developed along splays from a transtensional zone at the NW end of the Ballenas Transform Fault. Twelve volcanic knolls were identified and are associated with the strands or horsetails from this zone. A structural connection between the two Upper Delfín Basins is evident in the switching of the center of extension along axis. Sonobuoy refraction data suggest that the basement consists of mixed igneous sedimentary material, atypical of mid-ocean ridges. On the basis of the near-surface manifestations of active faulting and magmatism, seafloor spreading will likely first occur in the Lower Delfín Basin. We suggest the transition to seafloor spreading is delayed by the lack of strain-partitioned and focused deformation as a consequence of shear in a broad zone beneath a thick sediment cover.

  10. Convection activity over the Guinean coast and Central Africa during northern spring from synoptic to intra-seasonal timescales

    NASA Astrophysics Data System (ADS)

    Kamsu-Tamo, P. H.; Janicot, S.; Monkam, D.; Lenouo, A.

    2014-12-01

    This study proposes an overview of the main synoptic, medium-range and intraseasonal modes of convection and precipitation in northern spring (March-June 1979-2010) over West and Central Africa, and to understand their atmospheric dynamics. It is based on daily National Oceanic and Atmospheric Administration outgoing longwave radiation and Cloud Archive User Service Tb convection data, daily TRMM and Global Precipitation Climatology Project rainfall products and daily ERA-Interim reanalysis atmospheric fields. It is first shown that mesoscale convective systems can be modulated in terms of occurrences number and intensity at such time scales. Based on empirical orthogonal function analyses on the 2-90-day filtered data it is shown that the main mode of convective and rainfall variability is located along the Guinean coast with a moderate to weak extension over Central Africa. Corresponding regressed deseasonalised atmospheric fields highlight an eastward propagation of patterns consistent with convectively coupled equatorial Kelvin wave dynamics. Then a singular spectrum analysis combined with a Hierarchical Ascendant Classification enable to define objectively the main spectral bands of variability within the 2-90-day band, and highlight three main bands, 2-8-, 8-22- and 20-90-day. Within these three bands, space-time spectral decomposition is used to identify the relative impacts of convectively coupled equatorial Kelvin, Rossby and inertia-gravity waves, as well as Madden-Julian Oscillation (MJO) signal. It confirms that eastward propagating signals (convectively coupled equatorial Kelvin wave and MJO) are highly dominant in these convection and precipitation variability modes over the Guinean coast during northern spring. So, while rain-producing individual systems are moving westward, their activity are highly modulated by sub-regional and regional scales envelops moving to the east. This is a burning issue for operational forecasting centers to be able to

  11. Effects of Leisure-Time Physical Activity on Vertebral Dimensions in the Northern Finland Birth Cohort 1966

    PubMed Central

    Oura, Petteri; Paananen, Markus; Niinimäki, Jaakko; Tammelin, Tuija; Herrala, Sauli; Auvinen, Juha; Korpelainen, Raija; Junno, Juho-Antti; Karppinen, Jaro

    2016-01-01

    Vertebral fractures are a common burden amongst elderly and late middle aged people. Vertebral cross-sectional area (CSA) is a major determinant of vertebral strength and thus associated with vertebral fracture risk. Previous studies suggest that physical activity affects vertebral CSA. We aimed to investigate the relationship between leisure-time physical activity (LTPA) from adolescence to middle age and vertebral dimensions in adulthood. We utilized the Northern Finland Birth Cohort 1966, of which 1188 subjects had records of LTPA at 14, 31 and 46 years, and had undergone lumbar magnetic resonance imaging (MRI) at the mean age of 47 years. Using MRI data, we measured eight dimensions of the L4 vertebra. Socioeconomic status, smoking habits, height and weight were also recorded at 14, 31 and 46 years. We obtained lifetime LTPA (14–46 years of age) trajectories using latent class analysis, which resulted in three categories (active, moderately active, inactive) in both genders. Linear regression analysis was used to analyze the association between LTPA and vertebral CSA with adjustments for vertebral height, BMI, socioeconomic status and smoking. High lifetime LTPA was associated with larger vertebral CSA in women but not men. Further research is needed to investigate the factors behind the observed gender-related differences. PMID:27282350

  12. Effects of Leisure-Time Physical Activity on Vertebral Dimensions in the Northern Finland Birth Cohort 1966.

    PubMed

    Oura, Petteri; Paananen, Markus; Niinimäki, Jaakko; Tammelin, Tuija; Herrala, Sauli; Auvinen, Juha; Korpelainen, Raija; Junno, Juho-Antti; Karppinen, Jaro

    2016-01-01

    Vertebral fractures are a common burden amongst elderly and late middle aged people. Vertebral cross-sectional area (CSA) is a major determinant of vertebral strength and thus associated with vertebral fracture risk. Previous studies suggest that physical activity affects vertebral CSA. We aimed to investigate the relationship between leisure-time physical activity (LTPA) from adolescence to middle age and vertebral dimensions in adulthood. We utilized the Northern Finland Birth Cohort 1966, of which 1188 subjects had records of LTPA at 14, 31 and 46 years, and had undergone lumbar magnetic resonance imaging (MRI) at the mean age of 47 years. Using MRI data, we measured eight dimensions of the L4 vertebra. Socioeconomic status, smoking habits, height and weight were also recorded at 14, 31 and 46 years. We obtained lifetime LTPA (14-46 years of age) trajectories using latent class analysis, which resulted in three categories (active, moderately active, inactive) in both genders. Linear regression analysis was used to analyze the association between LTPA and vertebral CSA with adjustments for vertebral height, BMI, socioeconomic status and smoking. High lifetime LTPA was associated with larger vertebral CSA in women but not men. Further research is needed to investigate the factors behind the observed gender-related differences. PMID:27282350

  13. Late Pliocene-Quaternary evolution of outermost hinterland basins of the Northern Apennines (Italy), and their relevance to active tectonics

    NASA Astrophysics Data System (ADS)

    Sani, Federico; Bonini, Marco; Piccardi, Luigi; Vannucci, Gianfranco; Delle Donne, Dario; Benvenuti, Marco; Moratti, Giovanna; Corti, Giacomo; Montanari, Domenico; Sedda, Lorenzo; Tanini, Chiara

    2009-10-01

    We examine the tectonic evolution and structural characteristics of the Quaternary intermontane Mugello, Casentino, and Sansepolcro basins, in the Northern Apennines fold-and-thrust belt. These basins have been classically interpreted to have developed under an extensional regime, and to mark the extension-compression transition. The results of our study have instead allowed framing the formation of these basins into a compressive setting tied to the activity of backthrust faults at their northeastern margin. Syndepositional activity of these structures is manifested by consistent architecture of sediments and outcrop-scale deformation. After this phase, the Mugello and Sansepolcro basins experienced a phase of normal faulting extending from the middle Pleistocene until Present. Basin evolution can be thus basically framed into a two-phase history, with extensional tectonics superposed onto compressional structures. Analysis of morphologic features has revealed the occurrence of fresh fault scarps and interaction of faulting with drainage systems, which have been interpreted as evidence for potential ongoing activity of normal faults. Extensional tectonics is also manifested by recent seismicity, and likely caused the strong historical earthquakes affecting the Mugello and Sansepolcro basins. Qualitative comparison of surface information with depth-converted seismic data suggests the basins to represent discrete subsiding areas within the seismic belt extending along the axial zone of the Apennines. The inferred chronology of deformation and the timing of activity of normal faults have an obvious impact on the elaboration of seismic hazard models.

  14. Immunological Diagnosis of Human Cystic Echinococcosis: Utility of Discriminant Analysis Applied to the Enzyme-Linked Immunoelectrotransfer Blot

    PubMed Central

    Gadea, I.; Ayala, G.; Diago, M. T.; Cuñat, A.; de Lomas, J. García

    1999-01-01

    An enzyme-linked immunoelectrotransfer blot for the diagnosis of human hydatid disease was performed, and the different antibody responses were analyzed by a discriminant analysis. This multivariate technique gave us, first, a selection of the most important responses against Echinococcus granulosus infection and, second, a procedure for the classification of patients into two groups: patients with hydatid disease and patients without a history of hydatid disease. This method was applied to 67 patients, 25 with active hydatid cysts (24 hepatic and 1 pulmonary) and 42 without a history of hydatid disease and was compared with the results obtained by conventional serology: indirect hemagglutination, latex particle agglutination, and basophil degranulation. An immunoelectrotransfer blot coupled to a discriminant analysis was more sensitive than conventional serological diagnosis and detected 100% of patients with an active hepatic hydatid cyst with a specificity of 100%. This method, however, failed to detect an uncomplicated hyaline pulmonary hydatid cyst. PMID:10391851

  15. Quaternary hyperpycnal fans on the shelf of an active margin basin, Northern Santa Barbara Channel, California

    NASA Astrophysics Data System (ADS)

    Steel, E.; Simms, A.; Warrick, J. A.

    2013-12-01

    The small mountainous rivers draining the Transverse Ranges of southern California are known to form sediment-rich hyperpycnal plumes on the adjacent shelf during flooding events. Six fans were recently identified using sonar and lidar data in the northern Santa Barbara Channel and represent a unique opportunity to sample hyperpycnal deposits that have not been reworked or remobilized by other sedimentary processes. The two largest of these fans are those located directly offshore of Refugio and Tajiguas Creeks and are found in 20m to 70m water depths. We conducted shallow seismic surveys to image the morphology and internal architecture of the two fans. Internal reflectors define three seismic packages within the fans and isopach maps of these packages are presented. Geometries of the seismic reflections are interpreted to represent a shift from erosion of material over the most proximal fan locations to deposition of sediment with little or no erosion in distal portions. In several locations, dipping reflections can be clearly seen beneath an unconformity. Where present, this unconformity is interpreted to represent the base of the Holocene section overlying deformed Neogene strata. We report the results of a coring campaign on one of these fans designed to characterize the grain size, grain shape, and facies trends of hyperpycnal deposits. Additionally, petrology of core samples was compared to modern river samples to determine source regions. By analyzing sedimentation patterns and structures found in the fans of the Santa Barbara Channel, we hope to identify features that can be used to distinguish hyperpycnal deposition from other density-driven flows.

  16. The Status of Daily Physical Activity in Northern Ontario's Elementary Public Schools

    ERIC Educational Resources Information Center

    Rickwood, Greg

    2015-01-01

    The importance of daily physical activity (DPA) for children and youth is highlighted in Canada's Active Healthy Kids annual report on fitness. Since 2005, this report has revealed that elementary-aged students are spending most of their waking hours stationary, in front of screens (phones, televisions, computers). To counteract this trend, the…

  17. Muskox Milk, Ptarmigan Pie and Other Northern Delicacies (Kids Can Cook): Recipes and Related Activities.

    ERIC Educational Resources Information Center

    Northwest Territories Dept. of Education, Yellowknife.

    This profusely illustrated book of recipes encourages the use of foods in children's learning activities, especially foods that are harvested in the Northwest Territories of Canada and that play a role in health maintenance. The activities described also provide an opportunity for children to experience new foods. Introductory material includes…

  18. Evaluation of the flora of northern Mexico for in vitro antimicrobial and antituberculosis activity.

    PubMed

    Molina-Salinas, G M; Pérez-López, A; Becerril-Montes, P; Salazar-Aranda, R; Said-Fernández, S; de Torres, N Waksman

    2007-02-12

    The aim of the present study was to evaluate the potential antimicrobial activity of 14 plants used in northeast México for the treatment of respiratory diseases, against drug-sensitive and drug-resistant strains of Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus influenzae type b and Mycobacterium tuberculosis. Forty-eight organic and aqueous extracts were tested against these bacterial strains using a broth microdilution test. No aqueous extracts showed antimicrobial activity, whereas most of the organic extracts presented antimicrobial activity against at least one of the drug-resistant microorganisms tested. Methanol-based extracts from the roots and leaves of Leucophyllum frutescens and ethyl ether extract from the roots of Chrysanctinia mexicana showed the greatest antimicrobial activity against the drug-resistant strain of Mycobacterium tuberculosis; the minimal inhibitory concentration (MIC) were 62.5, 125 and 62.5 microg/mL, respectively; methanol-based extract from the leaves of Cordia boissieri showed the best antimicrobial activity against the drug-resistant strain of Staphylococcus aureus (MIC 250 microg/mL); the hexane-based extract from the fruits of Schinus molle showed considerable antimicrobial activity against the drug-resistant strain of Streptococcus pneumoniae (MIC 62.5 microg/mL). This study supports that selecting plants by ethnobotanical criteria enhances the possibility of finding species with activity against resistant microorganisms. PMID:17000069

  19. A Laboratory Exercise Illustrating the Sensitivity and Specificity of Western Blot Analysis

    ERIC Educational Resources Information Center

    Chang, Ming-Mei; Lovett, Janice

    2011-01-01

    Western blot analysis, commonly known as "Western blotting," is a standard tool in every laboratory where proteins are analyzed. It involves the separation of polypeptides in polyacrylamide gels followed by the electrophoretic transfer of the separated polypeptides onto a nitrocellulose or polyvinylidene fluoride membrane. A replica of the…

  20. Preparation of Cell Lysate from Mouse Oocytes for Western Blotting Analysis.

    PubMed

    Marangos, Petros

    2016-01-01

    Western Blotting has been used extensively for the identification of the protein factors that regulate mammalian oocyte meiosis. However, the limitations in collecting sufficient numbers of oocytes can hinder the efficiency of the technique. Here we provide a detailed protocol for the accurate preparation of mouse oocyte samples for Western Blotting analysis. PMID:27557583

  1. An active footwall shortcut thrust revealed by seismic reflection profiling: a case study of the Futaba fault, northern Honshu, Japan

    NASA Astrophysics Data System (ADS)

    Sato, Hiroshi; Ishiyama, Tatsuya; Kato, Naoko; Higashinaka, Motonori; Kurashimo, Eiji; Iwasaki, Takaya; Abe, Susumu

    2013-04-01

    The Futaba fault is located along the Pacific cast of southern part of Northern Honshu and continues at least 100 km. Based on tectonic morphological research, its central part show the active tectonic features. Due to the effect of M9 Tohoku Oki earthquake 2011, the evaluation of Coulomb stress changes on the fault surface is concerned for the assess of seismic hazards. To investigate the deep geometry of seismogenic source fault and basic crustal structure, we performed deep seismic reflection profiling along the 58-km-long seismic line across the Futaba fault. The seismic data were obtained using four vibroseis trucks and 1164 channel recorders. The seismic section portrays the half graben filled by 1000-m-thick lower Miocene fluvial sediments, suggesting that the Futaba fault reactivated as a west dipping normal fault during the early Miocene associated with opening of the Sea of Japan. On the hanging wall of the Miocene normal fault, Mesozoic metamorphic rocks are cropping out forming a narrow range parallel to the fault. On the footwall of this range, footwall shortcut thrust is clearly identified by the deformation of Plio-Pleistocene sediments on the seismic section. The deeper extension of the Futaba fault can be traced down to 4.5 seconds (TWT) and sub-horizontal reflectors are developed around 6-7 seconds (TWT). The dip angle of the Futaba fault in the seismogenic zone is about 45 degrees. The footwall shortcut thrust was formed at the shallow high-angle part of the Futaba fault as a low-angle (30 degrees) reverse fault. The formation of half graben is limited along the northern part of this fault system. The footwall shortcut thrust was developed along a 40-km-long segment only accompanied with the Miocene half graben. The southern segment of the surface trace of the Futaba fault suggests a straight geometry may represent a change in dip angle.

  2. Repeated large-magnitude earthquakes in a tectonically active, low-strain continental interior: The northern Tien Shan, Kyrgyzstan

    NASA Astrophysics Data System (ADS)

    Landgraf, A.; Dzhumabaeva, A.; Abdrakhmatov, K. E.; Strecker, M. R.; Macaulay, E. A.; Arrowsmith, Jr.; Sudhaus, H.; Preusser, F.; Rugel, G.; Merchel, S.

    2016-05-01

    The northern Tien Shan of Kyrgyzstan and Kazakhstan has been affected by a series of major earthquakes in the late 19th and early 20th centuries. To assess the significance of such a pulse of strain release in a continental interior, it is important to analyze and quantify strain release over multiple time scales. We have undertaken paleoseismological investigations at two geomorphically distinct sites (Panfilovkoe and Rot Front) near the Kyrgyz capital Bishkek. Although located near the historic epicenters, both sites were not affected by these earthquakes. Trenching was accompanied by dating stratigraphy and offset surfaces using luminescence, radiocarbon, and 10Be terrestrial cosmogenic nuclide methods. At Rot Front, trenching of a small scarp did not reveal evidence for surface rupture during the last 5000 years. The scarp rather resembles an extensive debris-flow lobe. At Panfilovkoe, we estimate a Late Pleistocene minimum slip rate of 0.2 ± 0.1 mm/a, averaged over at least two, probably three earthquake cycles. Dip-slip reverse motion along segmented, moderately steep faults resulted in hanging wall collapse scarps during different events. The most recent earthquake occurred around 3.6 ± 1.3 kyr ago (1σ), with dip-slip offsets between 1.2 and 1.4 m. We calculate a probabilistic paleomagnitude to be between 6.7 and 7.2, which is in agreement with regional data from the Kyrgyz range. The morphotectonic signals in the northern Tien Shan are a prime example of deformation in a tectonically active intracontinental mountain belt and as such can help understand the longer-term coevolution of topography and seismogenic processes in similar structural settings worldwide.

  3. Fresh Shallow Valleys in Northern Arabia Terra: Evidence for a Late, Widespread Period of Aqueous Activity on Mars

    NASA Astrophysics Data System (ADS)

    Wilson, S. A.; Howard, A. D.; Moore, J. M.; Grant, J. A., III

    2015-12-01

    Concentrations of fresh shallow valleys (FSVs) on Mars occur between ~30-45° in both hemispheres as well as near the equator (e.g., Gale crater and vicinity). FSVs in the northern hemisphere occur along the dichotomy boundary, with the highest concentration in northern Arabia Terra from 35-40°N between 0-20ºE. In this region, FSVs developed both on and away from ejecta of relatively fresh craters, making the direct association between impact processes and formation less likely. Crater statistics and cross-cutting relationships indicate the formation of FSVs terminated prior to about 1.4 Ga, suggesting they may be contemporaneous with alluvial fan and delta formation in the equatorial and mid-latitudes. Many FSV systems are 150+ km long, and in several cases appear to cross depressions that were likely filled with ice or water during FSV formation. Most FSV systems could have formed from a single episode of erosion but incision of the main channel in some locations may imply episodic formation. One long valley system in N. Arabia Terra with an incised channel (100 m wide, up to 10 m deep) yields formative discharges in the range of 100-200 m3/s assuming sand sized particles and a flow depth of 0.25 m, consistent with formation via snowmelt. The grain size is unknown, therefore discharges could range from 10s m3/s for active transport of fine sand to 1000 m3/s for gravel sized grains. Approximately 25 small craters (diameters ranging from ~2-10 km) have single channels extending outward from their rim, implying overflow of the crater and the possible presence of a deep lake. Widespread occurrence of FSVs, their similar morphology, and modest state of degradation is consistent with most forming during one or more global intervals of favorable climate, likely through snowmelt from surface or sub-ice flows during the Hesperian.

  4. Implications of climatic seasonality on activity patterns and resource use by sympatric peccaries in northern Pantanal

    NASA Astrophysics Data System (ADS)

    Hofmann, Gabriel Selbach; Coelho, Igor Pfeifer; Bastazini, Vinicius Augusto Galvão; Cordeiro, José Luís Passos; de Oliveira, Luiz Flamarion Barbosa

    2016-03-01

    We evaluated the effects of climate seasonality from a thermal and water availability perspective on the activity patterns and resource use of Pecari tajacu and Tayassu pecari during wet and dry seasons in the northeastern Brazilian Pantanal. We used camera traps and temperature sensors to record species activity patterns in relation to temperature, established five habitat categories based on flooding intensity and local vegetation characteristics, assessed the activity patterns of each species in dry and wet periods and in artificial water bodies using circular statistical metrics, and calculated niche amplitude and overlap on three axes (temperature, time, and habitat) in both periods. Peccaries shared a strong resemblance in resource use and in their responses to seasonal variations in the tested gradients. The activity patterns of both species exhibited a significant correlation with air temperature on all the evaluated measures, and both species strongly reduced their activity when the air temperature exceeded 35 °C. High temperatures associated with low water availability were most likely responsible for the changes in species activity patterns, which resulted in an increased temporal overlap in habitat use throughout the dry season. However, the peccaries avoided intensively flooded habitats; therefore, the habitat gradient overlap was greater during the wet period. Our results show that an increase in niche overlap on the environmental gradient as a result of climatic seasonality may be partially compensated by a reduction in other niche dimensions. In this case, temporal partitioning appears to be an important, viable mechanism to reduce competition by potentially competing species.

  5. The necessity of and strategies for improving confidence in the accuracy of western blots

    PubMed Central

    Ghosh, Rajeshwary; Gilda, Jennifer E.; Gomes, Aldrin V.

    2016-01-01

    Summary Western blotting is one of the most commonly used laboratory techniques for identifying proteins and semi-quantifying protein amounts, however, several recent findings suggest that western blots may not be as reliable as previously assumed. This is not surprising since many labs are unaware of the limitations of western blotting. In this manuscript we review essential strategies for improving confidence in the accuracy of western blots. These strategies include selecting the best normalization standard, proper sample preparation, determining the linear range for antibodies and protein stains relevant to the sample of interest, confirming the quality of the primary antibody, preventing signal saturation and accurately quantifying the signal intensity of the target protein. Although western blotting is a powerful and indispensable scientific technique that can be used to accurately quantify relative protein levels, it is necessary that proper experimental techniques and strategies are employed. PMID:25059473

  6. The necessity of and strategies for improving confidence in the accuracy of western blots.

    PubMed

    Ghosh, Rajeshwary; Gilda, Jennifer E; Gomes, Aldrin V

    2014-10-01

    Western blotting is one of the most commonly used laboratory techniques for identifying proteins and semi-quantifying protein amounts; however, several recent findings suggest that western blots may not be as reliable as previously assumed. This is not surprising since many labs are unaware of the limitations of western blotting. In this manuscript, we review essential strategies for improving confidence in the accuracy of western blots. These strategies include selecting the best normalization standard, proper sample preparation, determining the linear range for antibodies and protein stains relevant to the sample of interest, confirming the quality of the primary antibody, preventing signal saturation and accurately quantifying the signal intensity of the target protein. Although western blotting is a powerful and indispensable scientific technique that can be used to accurately quantify relative protein levels, it is necessary that proper experimental techniques and strategies are employed. PMID:25059473

  7. Molecular combing compared to Southern blot for measuring D4Z4 contractions in FSHD.

    PubMed

    Vasale, Jessica; Boyar, Fatih; Jocson, Michael; Sulcova, Vladimira; Chan, Patricia; Liaquat, Khalida; Hoffman, Carol; Meservey, Marc; Chang, Isabell; Tsao, David; Hensley, Kerri; Liu, Yan; Owen, Renius; Braastad, Corey; Sun, Weimin; Walrafen, Pierre; Komatsu, Jun; Wang, Jia-Chi; Bensimon, Aaron; Anguiano, Arturo; Jaremko, Malgorzata; Wang, Zhenyuan; Batish, Sat; Strom, Charles; Higgins, Joseph

    2015-12-01

    We compare molecular combing to Southern blot in the analysis of the facioscapulohumeral muscular dystrophy type 1 locus (FSHD1) on chromosome 4q35-qter (chr 4q) in genomic DNA specimens sent to a clinical laboratory for FSHD testing. A de-identified set of 87 genomic DNA specimens determined by Southern blot as normal (n = 71), abnormal with D4Z4 macrosatellite repeat array contractions (n = 7), indeterminate (n = 6), borderline (n = 2), or mosaic (n = 1) was independently re-analyzed by molecular combing in a blinded fashion. The molecular combing results were identical to the Southern blot results in 75 (86%) of cases. All contractions (n = 7) and mosaics (n = 1) detected by Southern blot were confirmed by molecular combing. Of the 71 samples with normal Southern blot results, 67 (94%) had concordant molecular combing results. The four discrepancies were either mosaic (n = 2), rearranged (n = 1), or borderline by molecular combing (n = 1). All indeterminate Southern blot results (n = 6) were resolved by molecular combing as either normal (n = 4), borderline (n = 1), or rearranged (n = 1). The two borderline Southern blot results showed a D4Z4 contraction on the chr 4qA allele and a normal result by molecular combing. Molecular combing overcomes a number of technical limitations of Southern blot by providing direct visualization of D4Z4 macrosatellite repeat arrays on specific chr 4q and chr 10q alleles and more precise D4Z4 repeat sizing. This study suggests that molecular combing has superior analytical validity compared to Southern blot for determining D4Z4 contraction size, detecting mosaicism, and resolving borderline and indeterminate Southern blot results. Further studies are needed to establish the clinical validity and diagnostic accuracy of these findings in FSHD. PMID:26420234

  8. The Curriculum Experiences of Pre-School Children in Northern Ireland: Classroom Practices in Terms of Child-Initiated Play and Adult-Directed Activities.

    ERIC Educational Resources Information Center

    Guimaraes, Sofia; McSherry, Kathleen

    2002-01-01

    Examined whether activities in the preschool curriculum across Northern Ireland are more adult-directed or child-directed. Findings from observations of 71 preschool settings showed that the curriculum of most reception settings was more adult-directed, while most nursery schools, play groups, and private day nurseries adopted a child-initiated…

  9. Correlation of Solar Activities with the Telluric Currents Level in the Northern Region of Malaysia

    NASA Astrophysics Data System (ADS)

    Razelan, Mazlina M.; Said, N. Masdiana Md; Aziz, A. H. A.; Chong, H. Y.; Nawawi, M.

    2010-07-01

    The relation between solar activities and the geomagnetic field induced currents (GIC) have been well studied in the auroral region and it usually occurs most frequently at high latitudes. However, during major geomagnetic storms, the auroral zone can extend substantially towards lower latitudes. Disturbance caused by solar activities can disrupt power grids and also increase the corrosion rate of buried natural gas pipelines. GIC are driven by the geomagnetic field induced by a geomagnetic disturbance. In this paper, we investigated the correlation between solar activities using the interplanetary magnetic field (IMF) and geomagnetic disturbance storm time (DST) index data with the telluric currents (also referred to as geomagnetic induced currents GIC) level through the disturbance pattern of geomagnetic field. The research areas are from Lunas in Kedah to Perlis. The pattern of geomagnetic field disturbance had been identified and analyzed to investigate the harmful effect of geomagnetic storms towards the performance of complex power grid in Malaysia.

  10. Implications of climatic seasonality on activity patterns and resource use by sympatric peccaries in northern Pantanal.

    PubMed

    Hofmann, Gabriel Selbach; Coelho, Igor Pfeifer; Bastazini, Vinicius Augusto Galvão; Cordeiro, José Luís Passos; de Oliveira, Luiz Flamarion Barbosa

    2016-03-01

    We evaluated the effects of climate seasonality from a thermal and water availability perspective on the activity patterns and resource use of Pecari tajacu and Tayassu pecari during wet and dry seasons in the northeastern Brazilian Pantanal. We used camera traps and temperature sensors to record species activity patterns in relation to temperature, established five habitat categories based on flooding intensity and local vegetation characteristics, assessed the activity patterns of each species in dry and wet periods and in artificial water bodies using circular statistical metrics, and calculated niche amplitude and overlap on three axes (temperature, time, and habitat) in both periods. Peccaries shared a strong resemblance in resource use and in their responses to seasonal variations in the tested gradients. The activity patterns of both species exhibited a significant correlation with air temperature on all the evaluated measures, and both species strongly reduced their activity when the air temperature exceeded 35 °C. High temperatures associated with low water availability were most likely responsible for the changes in species activity patterns, which resulted in an increased temporal overlap in habitat use throughout the dry season. However, the peccaries avoided intensively flooded habitats; therefore, the habitat gradient overlap was greater during the wet period. Our results show that an increase in niche overlap on the environmental gradient as a result of climatic seasonality may be partially compensated by a reduction in other niche dimensions. In this case, temporal partitioning appears to be an important, viable mechanism to reduce competition by potentially competing species. PMID:26219606

  11. Enhanced gravity-wave activity and interhemispheric coupling during the MaCWAVE/MIDAS northern summer program 2002

    NASA Astrophysics Data System (ADS)

    Becker, E.; Fritts, D. C.

    2006-07-01

    We present new sensitivity experiments that link observed anomalies of the mesosphere and lower thermosphere at high latitudes during the MaCWAVE/MIDAS summer program 2002 to enhanced planetary Rossby-wave activity in the austral winter troposphere.

    We employ the same general concept of a GCM having simplified representations of radiative and latent heating as in a previous study by Becker et al. (2004). In the present version, however, the model includes no gravity wave (GW) parameterization. Instead we employ a high vertical and a moderate horizontal resolution in order to describe GW effects explicitly. This is supported by advanced, nonlinear momentum diffusion schemes that allow for a self-consistent generation of inertia and mid-frequency GWs in the lower atmosphere, their vertical propagation into the mesosphere and lower thermosphere, and their subsequent dissipation which is induced by prescribed horizontal and vertical mixing lengths as functions of height.

    The main anomalies in northern summer 2002 consist of higher temperatures than usual above 82 km, an anomalous eastward mean zonal wind between 70 and 90 km, an altered meridional flow, enhanced turbulent dissipation below 80 km, and enhanced temperature variations associated with GWs. These signals are all reasonably described by differences between two long-integration perpetual model runs, one with normal July conditions, and another run with modified latent heating in the tropics and Southern Hemisphere to mimic conditions that correspond to the unusual austral winter 2002. The model response to the enhanced winter hemisphere Rossby-wave activity has resulted in both an interhemispheric coupling through a downward shift of the GW-driven branch of the residual circulation and an increased GW activity at high summer latitudes. Thus a quantitative explanation of the dynamical state of the northern mesosphere and lower thermosphere during

  12. Paleozoic evolution of active margin basins in the southern Central Andes (northwestern Argentina and northern Chile)

    NASA Astrophysics Data System (ADS)

    Bahlburg, H.; Breitkreuz, C.

    The geodynamic evolution of the Paleozoic continental margin of Gondwana in the region of the southern Central Andes is characterized by the westward progression of orogenic basin formation through time. The Ordovician basin in the northwest Argentinian Cordillera Oriental and Puna originated as an Early Ordovician back-arc basin. The contemporaneous magmatic arc of an east-dipping subduction zone was presumably located in northern Chile. In the back-arc basin, a ca. 3500 meter, fining-up volcaniclastic apron connected to the arc formed during the Arenigian. Increased subsidence in the late Arenigian allowed for the accomodation of large volumes of volcaniclastic turbidites during the Middle Ordovician. Subsidence and sedimentation were caused by the onset of collision between the para-autochthonous Arequipa Massif Terrane (AMT) and the South American margin at the Arenigian-Llanvirnian transition. This led to eastward thrusting of the arc complex over its back-arc basin and, consequently, to its transformation into a marine foreland basin. As a result of thrusting in the west, a flexural bulge formed in the east, leading to uplift and emergence of the Cordillera Oriental shelf during the Guandacol Event at the Arenigian-Llanvirnian transition. The basin fill was folded during the terminal collision of the AMT during the Oclóyic Orogeny (Ashgillian). The folded strata were intruded post-tectonically by the presumably Silurian granitoids of the "Faja Eruptiva de la Puna Oriental." The orogeny led to the formation of the positive area of the Arco Puneño. West of the Arco Puneño, a further marine basin developed during the Early Devonian, the eastern shelf of which occupied the area of the Cordillera Occidental, Depresión Preandina, and Precordillera. The corresponding deep marine turbidite basin was located in the region of the Cordillera de la Costa. Deposition continued until the basin fill was folded in the early Late Carboniferous Toco Orogeny. The basin

  13. TTC Dyeing for Evaluation of Wetland Vegetation Activity in Sarobetsu Mire, Northern Japan

    NASA Astrophysics Data System (ADS)

    Hayashida, K.; Murakami, Y.; Mizugaki, S.; Yano, M.

    2011-12-01

    Reduced groundwater levels cause drying and shrinkage of mires, resulting in rapid changes in wetland vegetation. To conserve pre-existing wetland vegetation, it is important to clarify its behavior in relation to groundwater level fluctuations. Sarobetsu Mire, the biggest high moor in Japan, is experiencing a transition of its wetland vegetation due to increased invasion by dwarf bamboo (Sasa (Eusasa)). Previous studies have been limited to qualitative assessment concluding that the reduction of wetland vegetation areas is taking place. The invasion of dwarf bamboo was found to be inhibited in areas with high groundwater levels, but few studies have sought to quantitatively assess the responses of individual plants to groundwater variations. Growth activity has often been measured using the triphenyl-tetrazolium-chloride (TTC) method, which is a simple approach. The purpose of this study is to develop a quantitative method to assess the response (in terms of activity) of wetland vegetation to groundwater levels. To examine the relationship between the two (i.e., whether plants are dead or alive), a pair of laboratory experiments was conducted using the TTC method and absorptimetry with dwarf bamboo collected from Sarobetsu Mire. The first experiment was to investigate the activity of wetland vegetation in an inundated environment, and the second was to investigate annual fluctuations in such activity. The results showed that the activity (in terms of absorbance) of dwarf bamboo continued to decrease immediately after collection, and that the absorbance peak at a wavelength of 480 nm was also smaller. However, after the submersion period exceeded 30 days, there were no significant changes in absorbance as the submersion period went on. This indicates that dwarf bamboo underwent activity loss and died when the submersion period exceeded 30 days. Dwarf bamboo was considered dead when absorbance (480 nm) was 0.2 or lower and the peak became unclear. Since the change

  14. School Engagement among Aboriginal Students in Northern Canada: Perspectives From Activity Settings Theory

    ERIC Educational Resources Information Center

    Davison, Colleen M.; Hawe, Penelope

    2012-01-01

    Background: Educational disengagement is a public health concern among Aboriginal populations in many countries. It has been investigated previously in a variety of ways, with the conventional focus being on the children themselves. Activity settings are events and places, theorized in terms of their symbols, roles, time frame, funds, people, and…

  15. [Obstetrical activity of a regional hospital center in the northern Ivory Coast].

    PubMed

    Ribault, L

    1989-05-01

    Rupture of the uterus remains, in some countries, a frequent occurrence. This report of the obstetrical activity of a Regional Hospital Center in the Ivory Coast, demonstrates all the difficulties of a disconcerting pathology for visiting physicians, not used to this type of accident in Europe. PMID:2544976

  16. Antioxidant Activities of Ribes diacanthum Pall Extracts in the Northern Region of Mongolia

    PubMed Central

    Birasuren, Bayarmaa; Oh, Hye Lim; Kim, Cho Rong; Kim, Na Yeon; Jeon, Hye Lyun; Kim, Mee Ree

    2012-01-01

    Ribes diacanthum Pall (RDP) is a member of the Saxifragaceae family. The plant is traditionally used in Mongolia for the treatment of various ailments associated with kidney and bladder’s diseases, cystitis, kidney stone, and edema. This study was aimed to investigate antioxidant activities of different solvent extracts of whole Pall plants, based on ferric-reducing antioxidant potential (FRAP), 2,2′-azinobis(3-ethybenzothiazoline-6-sulfonic acid) (ABTS· +) radical scavenging activity, 1,1-diphenyl-2-picrydrazyl (DPPH·), and hydroxyl (·OH) radical scavenging activities. Additionally, total flavonoids and phenolic contents (TPC) were also determined. The ethyl acetate extract of RDP (EARDP) had a remarkable radical scavenging capacity with an IC50 value of 0.1482 mg/mL. In addition, EARDP was shown to be higher in total phenolic and flavonoid contents than the methanol extract of RDP (MRDP). Moreover, the EARDP had the predominant antioxidant capacity, DPPH, hydroxyl, and ABTS radical scavenging activities and ferric reducing power. These results suggest a potential for R. diacanthum Pall extract as a functional medicinal material against free-radical-associated oxidative damage. PMID:24471094

  17. Physical Education Teacher Attitudes towards the Effectiveness of Sport Activities in Northern-East Badia

    ERIC Educational Resources Information Center

    Al-Oun, Ismael Sood

    2015-01-01

    The purpose of this study is to investigate physical education teacher attitudes towards the effectiveness of sport activities in north-east Badia. The study population consisted of all teachers of physical education who are studying curriculum of physical education in schools affiliated to the Directorate of Education of the brigade desert…

  18. The polyphenol content and antioxidant activities of the main edible vegetables in northern Vietnam.

    PubMed

    Thu, Nghiem Nguyet; Sakurai, Chika; Uto, Harumi; Van Chuyen, Nguyen; Lien, Do Thi Kim; Yamamoto, Shigeru; Ohmori, Reiko; Kondo, Kazuo

    2004-06-01

    Oxidized low-density lipoprotein (LDL) is considered a risk factor in atherosclerosis, and polyphenols are the potential agents to inhibit the oxidation of LDL. We determined the polyphenol contents and the antioxidant activities of commonly consumed vegetables in Vietnam and assessed the quantity of the polyphenol intake from vegetables in the current Vietnamese diet. The polyphenol contents in 30 kinds of vegetables was determined by the Folin-Ciocalteu method. The antioxidant activities of vegetables were evaluated by measuring the oxidation of LDL and the reduction of the 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical. In this study, some herbs and edible wild vegetables possessed high contents of polyphenols and antioxidant activities. Among green vegetables, sweet potato leaves showed both a high polyphenol content and antioxidant activity. The mean polyphenol daily intake of the Vietnamese was a 595 mg catechin equivalent. Water spinach, a kind of green vegetable, contributed the highest amount (45%) of the total polyphenol intake, followed by other green vegetables. Neither herbs nor edible wild vegetables contributed significantly to the total polyphenol intake due to their low consumption. Green vegetables are therefore considered very important sources of polyphenol intake for the Vietnamese. PMID:15386933

  19. Bat mortality and activity at a Northern Iowa wind resource area

    USGS Publications Warehouse

    Jain, A.A.; Koford, Rolf R.; Hancock, A.W.; Zenner, G.G.

    2011-01-01

    We examined bat collision mortality, activity and species composition at an 89-turbine wind resource area in farmland of north-central Iowa from mid-Apr. to mid-Dec., 2003 and mid-Mar. to mid-Dec., 2004. We found 30 bats beneath turbines on cleared ground and gravel access areas in 2003 and 45 bats in 2004. After adjusting for search probability, search efficiency and scavenging rate, we estimated total bat mortality at 396 ?? 72 (95 ci) in 2003 and 636 ?? 112 (95 ci) in 2004. Although carcasses were mostly migratory tree bats, we found a considerable proportion of little brown bats (Myotis lucifugus). We recorded 1465 bat echolocation call files at turbine sites ( 34.88 call files/detector-night) and 1536 bat call files at adjacent non-turbine sites ( 36.57 call files/detector-night). Bat activity did not differ significantly between turbine and non-turbine sites. A large proportion of recorded call files were made by Myotis sp. but this may be because we detected activity at ground level only. There was no relationship between types of turbine lights and either collision mortality or echolocation activity. The highest levels of bat echolocation activity and collision mortality were recorded during Jul. and Aug. during the autumn dispersal and migration period. The fatality rates for bats in general and little brown bats in particular were higher at the Top of Iowa Wind Resource Area than at other, comparable studies in the region. Future efforts to study behavior of bats in flight around turbines as well as cumulative impact studies should not ignore non-tree dwelling bats, generally regarded as minimally affected. ?? 2011, American Midland Naturalist.

  20. Quaternary Uplift of Coral Terraces from Active Folding and Thrusting Along the Northern Coast of Timor-Leste

    NASA Astrophysics Data System (ADS)

    Cox, N. L.; Harris, R.; Merritts, D.

    2006-12-01

    Emergent coral terraces along the northern coast of Timor-Leste, reveal differential vertical strain along the strike of the active Banda arc-continent collision complex. The number of major coral terraces in surveyed profiles increases from 2 to 25 along a coastal distance of 150 km from central to eastern Timor-Leste. Comparison of 8 separate terrace profiles with sea level curves predicts vertical displacement rates that increase eastward from <0.3 to 1.0-1.5 mm/year. This pattern is corroborated by U-series age analyses that document non-linear increases in vertical strain eastward with the uplift rates ranging from <.04 to 2.0 mm/year. U-series ages also indicates the occurrence of both erosional (regressional) and depositional terraces. Two profiles, dominated by erosional terraces, have associated local lower depositional terraces. The erosional terraces are more abundant, but yield apparent lower uplift rates in comparison with the depositional terraces. This occurrence questions the validity of uplift rates obtained by age analysis for the errosional terraces and/or aids in the conclusion that differential vertical strain not only exists with distance between profiles but with time for each profile. We associate active uplift with northward movement along retro- wedge thrust faults that are well documented in seismic reflection profiles adjacent to the north coast of Timor- Leste.

  1. Molecular cloning and anti-HIV-1 activities of APOBEC3s from northern pig-tailed macaques (Macaca leonina).

    PubMed

    Zhang, Xiao-Liang; Song, Jia-Hao; Pang, Wei; Zheng, Yong-Tang

    2016-07-18

    Northern pig-tailed macaques (NPMs, Macaca leonina) are susceptible to HIV-1 infection largely due to the loss of HIV-1-restricting factor TRIM5α. However, great impediments still exist in the persistent replication of HIV-1 in vivo, suggesting some viral restriction factors are reserved in this host. The APOBEC3 proteins have demonstrated a capacity to restrict HIV-1 replication, but their inhibitory effects in NPMs remain elusive. In this study, we cloned the NPM A3A-A3H genes, and determined by BLAST searching that their coding sequences (CDSs) showed 99% identity to the corresponding counterparts from rhesus and southern pig-tailed macaques. We further analyzed the anti-HIV-1 activities of the A3A-A3H genes, and found that A3G and A3F had the greatest anti-HIV-1 activity compared with that of other members. The results of this study indicate that A3G and A3F might play critical roles in limiting HIV-1 replication in NPMs in vivo. Furthermore, this research provides valuable information for the optimization of monkey models of HIV-1 infection. PMID:27469256

  2. Molecular cloning and anti-HIV-1 activities of APOBEC3s from northern pig-tailed macaques (Macaca leonina)

    PubMed Central

    ZHANG, Xiao-Liang; SONG, Jia-Hao; PANG, Wei; ZHENG, Yong-Tang

    2016-01-01

    Northern pig-tailed macaques (NPMs, Macaca leonina) are susceptible to HIV-1 infection largely due to the loss of HIV-1-restricting factor TRIM5α. However, great impediments still exist in the persistent replication of HIV-1 in vivo, suggesting some viral restriction factors are reserved in this host. The APOBEC3 proteins have demonstrated a capacity to restrict HIV-1 replication, but their inhibitory effects in NPMs remain elusive. In this study, we cloned the NPM A3A-A3H genes, and determined by BLAST searching that their coding sequences (CDSs) showed 99% identity to the corresponding counterparts from rhesus and southern pig-tailed macaques. We further analyzed the anti-HIV-1 activities of the A3A-A3H genes, and found that A3G and A3F had the greatest anti-HIV-1 activity compared with that of other members. The results of this study indicate that A3G and A3F might play critical roles in limiting HIV-1 replication in NPMs in vivo. Furthermore, this research provides valuable information for the optimization of monkey models of HIV-1 infection. PMID:27469256

  3. A slow-slipping active fold and thrust system at the SE corner of the Atacama basin, northern Chile

    NASA Astrophysics Data System (ADS)

    Lin, Y.; Shyu, J. H.; González, G.

    2009-12-01

    The western South American offshore is one of the major active convergent plate boundaries in the world, where the Nazca plate is subducting northeastward beneath the South American plate at a rate of about 84 mm/yr. Despite of this rapid plate convergence, the forearc region of western Andes does not seem to undergo large deformation at present. In order to understand the characteristics and mechanisms of active forearc deformation related to the plate convergence, we investigated tectono-geomorphic features in the area of Tilocalar, near the SE margin of the Atacama Basin in northern Chile, where active structures have been previously identified. To map topographic features produced by active structures, we used a combination of several remote-sensing data sets, including digital elevation models (DEM) made from Shuttle Radar Topographic Mission (SRTM), as well as higher resolution ASTER and QuickBird satellite images. Detailed geomorphic surveys using real time kinematic (RTK) GPS are carried out in the field to obtain high-resolution topographic profiles across these features. We also performed 40Ar/39Ar dating of deformed volcanic rocks in order to determine the long-term slip rates of the active structures. The hyper-aridity of the Atacama Basin results in extremely low erosion and sedimentation rates in the area. As a result, the present relief of land surface is mostly produced by neotectonic activity, and can be used as deformation marker. In the Tilocalar area, several N-S trending ridges are present. These ridges, generally several tens of meters high, are likely formed by asymmetric anticlines or monoclines with steep forelimbs facing east, and these folds are likely fault-propagation folds produced by underlying thrust faults. We suggest that these faults merge at depth to become a major active thrust system. From 40Ar/39Ar plateau ages, we found that the surface ignimbrites mostly deposited in latest Pliocene (2.3~4.3 Ma). If the structures have been

  4. OVINE PROGRESSIVE PNEUMONIA VIRUS CAPSID IS B-CELL IMMUNODOMINANT USING WESTERN BLOT ANALYSIS: A COMPARISON OF SENSITIVITY BETWEEN WESTERN BLOT ANALYSIS AND IMMUNOPRECIPITATION

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A western blot assay (WB) was developed and analyzed against the comparable standard, immunoprecipitation of 35[S] methionine/cysteine-labeled ovine progressive pneumonia virus (OPPV) proteins (IP), for its ability to detect anti-OPPV antibodies using endpoint titers. WB is 12-fold more sensitive i...

  5. Reconstruction of fire spread within wildland fire events in Northern Eurasia from the MODIS active fire product

    NASA Astrophysics Data System (ADS)

    Loboda, T. V.; Csiszar, I. A.

    2007-04-01

    Russian boreal forests have been reshaped by wildland fire for millennia. While fire is a natural component of boreal ecosystems, it impacts various aspects of the environment and affects human well-being. Often fires occur over large remote areas with limited access, which makes their ground-based observation difficult. A significant progress has been made in mapping burned area from satellite imagery, which provides consistent and fairly unbiased estimates of fire impact on areas of interest at multiple scales. Although the information provided by burned area products is highly important, the spatio-temporal dynamics of individual fire events and their impact are less known. In high northern latitudes of Northern Eurasia, MODIS (Moderate Resolution Imaging Spectroradiometer) makes up to four daily observations from each of the Terra and Aqua satellites providing consistent data on fire development with high temporal frequency. Here we introduce an approach to reconstruct the development of fire events based on active fire detections from MODIS. Fire Spread Reconstruction (FSR) provides a means for characterization of fire occurrence over large territories from remotely sensed data. Individual fire detections are clustered within a GIS environment based on a set of rules determining proximity between fire observations in space and time. FSR determines the number of fire events, their approximate size, duration, and fire spread rate and allows for the analysis of fire occurrence and spread as a function of vegetation, fire season, fire weather and other parameters. FSR clusters were compared to burned scars mapped from Landsat7/ETM+ imagery over Yakutia (Russia). While some smaller burn scars were found to be formed through a continuous burning of a single fire event, large burned areas in Siberia were created by a constellation of fire events incorporating over 100 individual fire clusters. Geographic regions were found to have a stronger influence on the rates of

  6. Active tectonics of the Devils Mountain Fault and related structures, northern Puget Lowland and eastern Strait of Juan de Fuca region, Pacific Northwest

    USGS Publications Warehouse

    Johnson, Samuel Y.; Dadisman, Shawn V.; Mosher, David C.; Blakely, Richard J.; Childs, Jonathan R.

    2001-01-01

    Information from marine high-resolution and conventional seismic-reflection surveys, aeromagnetic mapping, coastal exposures of Pleistocene strata, and lithologic logs of water wells is used to assess the active tectonics of the northern Puget Lowland and eastern Strait of Juan de Fuca region of the Pacific Northwest. These data indicate that the Devils Mountain Fault and the newly recognized Strawberry Point and Utsalady Point faults are active structures and represent potential earthquake sources.

  7. The elevational pattern of microbial community and enzyme activity along the northern slop of Changbai Mountain

    NASA Astrophysics Data System (ADS)

    Xu, Zhiwei; Yu, Guirui; Zhang, Xinyu; Ge, Jianpin; He, Nianpeng; Wang, Qiufeng; Wang, Dan

    2014-05-01

    we present a comprehensive analysis of soil microbial community structure, enzyme activities and their role in soil organic matter mineralization along six elevations representing five typical vegetation types from forest to alpine tundra in Changbai Mountain, China. The results showed that the microbial PLFAs presented hump-shaped patterns along the elevation with the total microbial PLFAs highest in Ermans birch forest soil. The fungi to bacteria and gram positive to negative bacteria ratios increased along the elevation with the lowest values in Broad leaved forest and Dark-coniferous spruce-fir forest soil, respectively. The soil microbial community structures showed a biogeography distribution pattern in vertical direction with microbial community structures in Broad leaved forest and Mixed coniferous broad leaved forest different from other four sites. The soil enzyme activities in Broad leaved forest and Mixed coniferous broad leaved forest were significantly higher than in other four elevations. Principal component analysis (PCA) revealed substantial differences in soil microbial community composition among study sites, appeared to be driven primarily by MAT, MAP, soil temperature and content of silt & clay on the first principal component (PC1) which accounted for 87.1 % of the total sample variance. However, soil nutrients mainly responsible for the variation of soil enzyme activities. The soil organic matter mineralization rates tended to be highest in Ermans birch forest site and lowest in Dark-coniferous spruce-fir forest site and showed positive relationship with total microbial, bacterial and actinomycetes PLFAs. These findings could be used to facilitate interpretation of soil microbial community and ecological function in latitude forests ecosystem especially in volcanic forest ecosystem.

  8. Influence of season on daytime behavioral activities of donkeys in the Northern Guinea Savanna zone of Nigeria

    PubMed Central

    ZAKARI, Friday Ocheja; AYO, Joseph Olusegun; REKWOT, Peter Ibrahim; KAWU, Mohammed Umar

    2016-01-01

    ABSTRACT The present experiment was performed with the aim of investigating the effect of season on behavioral activities of donkeys during the rainy and harmattan seasons in the Northern Guinea zone of Nigeria. Sixteen apparently healthy donkeys were used as subjects and divided into four groups based on age. During each season, behavioral activities of each donkey were evaluated for three weeks using the focal animal sampling technique. The dry-bulb temperature (DBT), relative humidity (RH), and temperature-humidity index (THI) were obtained three times each day during the experimental period using standard procedures. In the rainy season, the mean DBT (31.65 ± 0.49°C), RH (73.63 ± 1.09%), and THI (84.39 ± 0.71) were significantly (P<0.0001) higher than the corresponding values of 24.00 ± 0.44°C, 36.80 ± 0.92%, and 64.80 ± 0.62 in the harmattan season. During the rainy season, the donkeys spent 60.00 ± 0.77%, 25.40 ± 0.69%, and 2.94 ± 0.21% on grazing, resting, and grooming, respectively. During the harmattan season, the donkeys spent the most time on grazing (76.76 ± 0.43%), less time on resting (11.97 ± 0.38%), and the least time on grooming (0.89 ± 0.05%). In conclusion, season and seasonal variations affect the daytime behavioral activities of donkeys in the zone, and this should be considered in husbandry practices for donkeys. PMID:26858575

  9. Geochemical characterization and biomonitoring of reclaimed soils in the Po River Delta (Northern Italy): implications for the agricultural activities.

    PubMed

    Di Giuseppe, Dario; Bianchini, Gianluca; Vittori Antisari, Livia; Martucci, Annalisa; Natali, Claudio; Beccaluva, Luigi

    2014-05-01

    This geochemical study is focused on the easternmost part of the Po River alluvial plain in Northern Italy, which is interested by widespread agricultural activities, investigating a reclaimed sector of the Province of Ferrara, known as "Valle del Mezzano" (Mezzano Low Land, hereafter reported as MLL) characterized by peat-rich soils. The chemical-mineralogical characterization of these reclaimed soils is important to compare the local geochemical backgrounds with those recorded in other sectors of the River Po plain and to monitor if the observed concentration exceeds critical thresholds. The reported analyses include (a) measurement of the soil salinity, (b) nutrient evaluation, (c) major and trace element concentrations carried out on bulk soils, (d) tests of metal extraction with both aqua regia and EDTA to highlight the distinct elemental mobility and (e) phyto-toxicological measurement of heavy metal concentrations in plants (Lactuca sativa acephala) grown on the studied soils. The results indicate (1) high soil salinity, often with drastic increase of sodium and chloride along the soil profiles, (2) high nitrogen content (in part related to anthropogenic activities) on superficial horizons and nitrate decrease along the soil profiles and (3) comparative enrichments in heavy metals with respect to other soils of the province, which indicate that peat deposits are effective in trapping metals from anthropogenic sources. This, in turn, implies potential geochemical risks for the agricultural activities. In this regard, specific concerns are related to the high nickel and arsenic content of MLL soils due to the mobility of these elements and their attitude to be taken up by plants. PMID:24374785

  10. Influence of season on daytime behavioral activities of donkeys in the Northern Guinea Savanna zone of Nigeria.

    PubMed

    Zakari, Friday Ocheja; Ayo, Joseph Olusegun; Rekwot, Peter Ibrahim; Kawu, Mohammed Umar

    2015-01-01

    The present experiment was performed with the aim of investigating the effect of season on behavioral activities of donkeys during the rainy and harmattan seasons in the Northern Guinea zone of Nigeria. Sixteen apparently healthy donkeys were used as subjects and divided into four groups based on age. During each season, behavioral activities of each donkey were evaluated for three weeks using the focal animal sampling technique. The dry-bulb temperature (DBT), relative humidity (RH), and temperature-humidity index (THI) were obtained three times each day during the experimental period using standard procedures. In the rainy season, the mean DBT (31.65 ± 0.49°C), RH (73.63 ± 1.09%), and THI (84.39 ± 0.71) were significantly (P<0.0001) higher than the corresponding values of 24.00 ± 0.44°C, 36.80 ± 0.92%, and 64.80 ± 0.62 in the harmattan season. During the rainy season, the donkeys spent 60.00 ± 0.77%, 25.40 ± 0.69%, and 2.94 ± 0.21% on grazing, resting, and grooming, respectively. During the harmattan season, the donkeys spent the most time on grazing (76.76 ± 0.43%), less time on resting (11.97 ± 0.38%), and the least time on grooming (0.89 ± 0.05%). In conclusion, season and seasonal variations affect the daytime behavioral activities of donkeys in the zone, and this should be considered in husbandry practices for donkeys. PMID:26858575

  11. Recent activity of Anatahan volcano, Northern Marina Islands, and its magma plumbing system

    NASA Astrophysics Data System (ADS)

    Nakada, S.; Morita, Y.; Matsushima, T.; Tabei, T.; Watanabe, A.; Maeno, F.; Camacho, J. T.

    2009-12-01

    The volcanic activity of Anatahan that began in 2003 has declined such as faint emission of volcanic gas from the crater and scarcity of volcanic tremor in 2009. Our team carried out geological, geodetic and seismological observation repeatedly till mid-2009 from the beginning of the eruption. The early phase of the eruption (2003-2004) can be characterized by magmatic and phreatomagmatic explosions, contrasting to mainly phreatic nature in the later phase (2005-2008). The active crater (Eastern Crater) was widened and deepened (much below the sea level) as the eruption progressed. Dominant products of phreatic explosions comprise of thick accumulation of thin layers of fine ash. A rough estimate of the total volume during these 5 years is as much as 1 km3, close to the volume of materials lost by enlargement of the active crater. Seismic observation was carried out during mid-2008 and mid-2009 by settling 5 temporary stations covering the whole of the island, each of which includes a 3 components short-period seismometer with corner frequency of 1Hz and a low-power consumption digital data recorder with 24-bits AD resolutions. GPS campaign observation was repeated in the same station during this period. VT and LP event were observed, though very low in occurrence in this period. Hypocenters of VT and LP events show all events occurred at the depth of less than 8km around the eastern crater. Among them, LP events occurred in the shallower (less than 3km) region. The error in the depth may be not more than a few kilometers, but that in the epicenter should be smaller than 1km because the most events are located inside of the seismic network. Moreover, the tremors observed in the 2008 summer continued for about 3 weeks. The amplitude increased gradually, kept at the maximum, and stopped abruptly. During the maximum amplitude period, ash emission was observed by VAAC. Estimated reduced displacement at the maximum is about 1 cm2, typical of a hydro-magmatic eruption

  12. Response of extratropical cyclone activity to the Kuroshio large meander in northern winter

    NASA Astrophysics Data System (ADS)

    Hayasaki, Masamitsu; Kawamura, Ryuichi; Mori, Masato; Watanabe, Masahiro

    2013-06-01

    We examined possible responses of cyclone activities to the bimodal path states of the Kuroshio Current [i.e., large meander (LM) and non-LM (NLM)] by using the long-term reanalysis data and the 20th century hindcast experiment of a high-resolution atmosphere-ocean coupled model. Compared with a seasonal mean cyclone track frequency for the LM and NLM periods, a primary cyclone track shifts southward in association with the meander of Kuroshio Current. Composite analyses of the hindcast experiment showed remarkable atmospheric responses accompanying the Kuroshio LM. The Kuroshio LM causes a decrease in latent heat flux in the south of Japan and a southward shift of the near-surface baroclinic zone. Distinctive decreases in thermodynamic fluxes inhibit the rapid development of cyclones in the meander region, eventually inducing positive sea level pressure anomalies downstream from that region.

  13. Gauging state-level and user group views of oyster reef restoration activities in the northern Gulf of Mexico

    USGS Publications Warehouse

    LaPeyre, Megan K.; Nix, Ashby; Laborde, Luke; Piazza, Bryan P.

    2012-01-01

    Successful oyster reef restoration, like many conservation challenges, requires not only biological understanding of the resource, but also stakeholder cooperation and political support. To measure perceptions of oyster reef restoration activities and priorities for future restoration along the northern Gulf of Mexico coast, a survey of 1500 individuals representing 4 user groups (oyster harvesters, shrimpers, environmental organization members, professionals), across 5 states (Texas, Louisiana, Mississippi, Alabama, Florida) was conducted in 2011. All respondents highly supported reef restoration efforts, but there was a dichotomy in preferred restoration goals with commercial fishermen more likely to support oyster reef restoration for stock enhancement, while professionals and environmental organization members were more likely to support oyster reef restoration to enhance ecosystem services. All user groups identified enforcement, funding, and appropriate site selection as basic requirements for successful reef restoration. For management of restored oyster reefs, oyster harvesters and shrimpers were less likely to support options that restricted the use of reefs, including gear restrictions and permanent closures, but did support rotating annual reef closures, while other stakeholders were willing to consider all options, including annual reef closures and sanctuary reefs. Overall, there were clear differences in management and communication preferences across user groups, but few differences across states. Understanding these key differences in stakeholder support for, and willingness to accept specific management actions is critical in moving management and restoration forward while minimizing conflict.

  14. Early detection of tick-borne encephalitis virus spatial distribution and activity in the province of Trento, northern Italy.

    PubMed

    Rizzoli, Annapaola; Neteler, Markus; Rosà, Roberto; Versini, Walter; Cristofolini, Antonio; Bregoli, Marco; Buckley, Alan; Gould, Ernest A

    2007-05-01

    New human cases of tick-borne encephalitis (TBE) have recently been recorded outside the recognised foci of this disease, i.e. in the province of Trento in northern Italy. In order to predict the highest risk areas for increased TBE virus activity, we have combined cross-sectional serological data, obtained from 459 domestic goats, with analysis of the autumnal cooling rate based on Moderate Resolution Imaging Spectroradiometer (MODIS) land surface temperature (LST) data. A significant relationship between finding antibodies against the virus in serum (seroprevalence) in goats and the autumnal cooling rate was detected, indicating that the transmission intensity of the virus does not only vary spatially, but also in relation to climatic factors. Virus seroprevalence in goats was correlated with the occurrence of TBE in humans and also with the average number of forestry workers' tick bites, demonstrating that serological screening of domestic animals, combined with an analysis of the autumnal cooling rate, can be used as early-warning predictors of TBE risk in humans. PMID:18686242

  15. Study of the Northern Qinghai-Tibetan Plateau Permafrost Active Layer Depth Rate Using Satellite Geodetic Observations

    NASA Astrophysics Data System (ADS)

    Jia, Y.; Su, X.; Shum, C. K.; Kim, J. W.; Kuo, C. Y.

    2015-12-01

    The Tibetan Plateau is the world's largest and the highest plateau with distinct and competing surface and subsurface processes. It is the Third Pole and the World Water Tower, owing to its vast ice reservoir with the largest number of glaciers in the world, and covered by a large (1.3 to 1.6 million km2) layer of discontinuous and sporadic alpine permafrost. The thawing over Tibetan Plateau permafrost regions is thought to be more severe compared with other high latitude permafrost regions by the fact that the permafrost is warm. During the past few decades, 82% of Tibetan Plateau glaciers have retreated and 10% permafrost has degraded. The overall mean active layer depth (ALD) rate increase over the Plateau is 1.4 cm yr-1, 1980-2001, based on model studies and comparison with in situ borehole data. Here we report on the work in progress to quantify ALD rate increase in the northern Tibetan Plateau near the Tibetan national highway, using multi-band SAR/InSAR for improved the thermokarst surface classification, Envisat radar altimetry and ALOS-1 InSAR observed land subsidence, ALD modeling for the various thermokarst surface to relate to subsidence measurements, and the associated validations using available in situ borehole subsidence measurements.

  16. High-resolution shallow reflection seismic image and surface evidence of the Upper Tiber Basin active faults (Northern Apennines, Italy)

    USGS Publications Warehouse

    Donne, D.D.; Plccardi, L.; Odum, J.K.; Stephenson, W.J.; Williams, R.A.

    2007-01-01

    Shallow seismic reflection prospecting has been carried out in order to investigate the faults that bound to the southwest and northeast the Quaternary Upper Tiber Basin (Northern Apennines, Italy). On the northeastern margin of the basin a ??? 1 km long reflection seismic profile images a fault segment and the associated up to 100 meters thick sediment wedge. Across the southwestern margin a 0.5 km-long seismic profile images a 50-55??-dipping extensional fault, that projects to the scarp at the base of the range-front, and against which a 100 m thick syn-tectonic sediment wedge has formed. The integration of surface and sub-surface data allows to estimate at least 190 meters of vertical displacement along the fault and a slip rate around 0.25 m/kyr. Southwestern fault might also be interpreted as the main splay structure of regional Alto Tiberina extensional fault. At last, the 1917 Monterchi earthquake (Imax=X, Boschi et alii, 2000) is correlable with an activation of the southwestern fault, and thus suggesting the seismogenic character of this latter.

  17. Multiplexed microfluidic blotting of proteins and nucleic acids by parallel, serpentine microchannels.

    PubMed

    He, Sha; Zhang, Yi; Wang, Pei; Xu, Xingzhi; Zhu, Kui; Pan, Wenying; Liu, Wenwen; Cai, Kaiyong; Sun, Jiashu; Zhang, Wei; Jiang, Xingyu

    2015-01-01

    This work develops a high-throughput, high-efficiency and straightforward microfluidic blotting method for analyzing proteins and nucleic acids. Sample solutions containing antibodies (for protein detection) or hybridization probes (for nucleic acid detection) are introduced into the parallel, serpentine microchannels to specifically recognize the immobilized targets on the substrate, achieving the identification of multiple targets in multiple samples simultaneously. The loading control, molecular weight markers, and antigen/antibody titration are designed and integrated into the microfluidic chip, thus allowing for the quantification of proteins and nucleic acids. Importantly, we could easily distinguish the adjacent blotting bands inside parallel microchannels, which may be difficult to achieve in conventional blotting. The small dimensions of microfluidic channels also help to reduce the amount of probing molecules and to accelerate the biochemical reaction. Our microfluidic blotting could bypass the steps of blocking and washing, further reducing the operation time and complexity. PMID:25342223

  18. Detection of DNA sequence polymorphisms in human genomic DNA by using denaturing gradient gel blots

    SciTech Connect

    Gray, M.R. )

    1992-02-01

    Denaturing gradient gel electrophoresis can detect sequence differences outside restriction-enzyme recognition sites. DNA sequence polymorphisms can be detected as restriction-fragment melting polymorphisms (RFMPs) in genomic DNA by using blots made from denaturing gradient gels. In contrast to the use of Southern blots to find sequence differences, denaturing gradient gel blots can detect differences almost anywhere, not just at 4-6-bp restriction-enzyme recognition sites. Human genomic DNA was digested with one of several randomly selected 4-bp recognition-site restriction enzymes, electrophoresed in denaturing gradient gels, and transferred to nylon membranes. The blots were hydridized with radioactive probes prepared from the factor VIII, type II collagen, insulin receptor, [beta][sub 2]-adrenergic receptor, and 21-hydroxylase genes; in unrelated individuals, several RFM's were found in fragments from every locus tested. No restriction map or sequence information was used to detect RFMP's.

  19. SOLID-PHASE ASSAY FOR THE PHOSPHORYLATION OF PROTEINS BLOTTED ON NITROCELLULOSE MEMBRANE FILTERS

    EPA Science Inventory

    A new procedure for the phosphorylation and assay of phosphoproteins is described. Proteins are solubilized from tissue samples, separated by polyacrylamide gel electrophoresis, transferred onto nitrocellulose membrane filters and the blotted polypeptides are phosphorylated with ...

  20. Active tectonic morphology and submarine deformation of the northern Gulf of Eilat/Aqaba from analyses of multibeam data

    NASA Astrophysics Data System (ADS)

    Tibor, Gideon; Niemi, Tina M.; Ben-Avraham, Zvi; Al-Zoubi, Abdallah; Sade, Ronnie A.; Hall, John K.; Hartman, Gal; Akawi, Emad; Abueladas, Abdelrahmem; Al-Ruzouq, Rami

    2010-12-01

    A high-resolution marine geophysical study was conducted during October-November 2006 in the northern Gulf of Aqaba/Eilat, providing the first multibeam imaging of the seafloor across the entire gulf head spanning both Israeli and Jordanian territorial waters. Analyses of the seafloor morphology show that the gulf head can be subdivided into the Eilat and Aqaba subbasins separated by the north-south-trending Ayla high. The Aqaba submarine basin appears starved of sediment supply, apparently causing erosion and a landward retreat of the shelf edge. Along the eastern border of this subbasin, the shelf is largely absent and its margin is influenced by the Aqaba Fault zone that forms a steep slope partially covered by sedimentary fan deltas from the adjacent ephemeral drainages. The Eilat subbasin, west of the Ayla high, receives a large amount of sediment derived from the extensive drainage basins of the Arava Valley (Wadi ’Arabah) and Yutim River to the north-northeast. These sediments and those entering from canyons on the south-western border of this subbasin are transported to the deep basin by turbidity currents and gravity slides, forming the Arava submarine fan. Large detached blocks and collapsed walls of submarine canyons and the western gulf margin indicate that mass wasting may be triggered by seismic activity. Seafloor lineaments defined by slope gradient analyses suggest that the Eilat Canyon and the boundaries of the Ayla high align along north- to northwest-striking fault systems—the Evrona Fault zone to the west and the Ayla Fault zone to the east. The shelf-slope break that lies along the 100 m isobath in the Eilat subbasin, and shallower (70-80 m isobaths) in the Aqaba subbasin, is offset by approx. 150 m along the eastern edge of the Ayla high. This offset might be the result of horizontal and vertical movements along what we call the Ayla Fault on the east side of the structure. Remnants of two marine terraces at 100 m and approx. 150 m water

  1. Active tectonic morphology and submarine deformation of the northern Gulf of Eilat/Aqaba from analyses of multibeam data

    NASA Astrophysics Data System (ADS)

    Tibor, Gideon; Niemi, Tina; Ben-Avraham, Zvi; Al-Zoubi, Abdallah; Sade, Ronnie; Hall, John; Hartman, Gal; Akawi, Emad; Abueladas, Abed; Al-Ruzouq, Rami

    2010-05-01

    A high-resolution marine geophysical study was conducted during October-November 2006 in the northern Gulf of Aqaba/Eilat (gulf head). The gulf head can be subdivided into the Eilat and Aqaba subbasins separated by the north-south-trending Ayla high. The Aqaba submarine basin appears starved of sediment supply, apparently causing erosion and a landward retreat of the shelf edge. Along the eastern border of this subbasin, the shelf is largely absent and its margin is influenced by the Aqaba fault zone that forms a steep slope partially covered by sedimentary fan deltas from the adjacent ephemeral drainages. The Eilat subbasin, west of the Ayla high, receives a large amount of sediment derived from the extensive drainage basins of the Arava Valley (Wadi 'Arabah) and Yutim River to the north-northeast. These sediments and those entering from canyons on the south-western border of this subbasin are transported to the deep basin by turbidity currents and gravity slides, forming the Arava submarine fan. Large detached blocks and collapsed walls of submarine canyons and the western gulf margin indicate that mass wasting may be triggered by seismic activity. Seafloor lineaments defined by slope gradient analyses suggest that the Eilat Canyon and the boundaries of the Ayla high align along north- to northwest-striking fault systems—the Evrona Fault Zone to the west and the Ayla Fault Zone to the east. The shelf-slope break that lies along the 100 m isobath in the Eilat subbasin, and shallower (70-80 m isobaths) in the Aqaba subbasin, is offset by approx. 150 m along the eastern edge of the Ayla high. This offset might be the result of horizontal and vertical movements along what we call the Ayla Fault on the east side of the structure. Remnants of two marine terraces at 100 m and approx. 150 m water depths line the southwest margin of the gulf. These terraces are truncated by faulting along their northern end. Fossil coral reefs, which have a similar

  2. Morphology and geotechnique of active-layer detachment failures in discontinuous and continuous permafrost, northern Canada

    NASA Astrophysics Data System (ADS)

    Lewkowicz, Antoni G.; Harris, Charles

    2005-07-01

    Fifty active-layer detachment failures triggered after forest fire in the discontinuous permafrost zone (central Mackenzie Valley, 65° N.) are compared to several hundred others caused by summer meteorological triggers in continuous permafrost (Fosheim Peninsula, Ellesmere Island, 80°N). Most failures fall into compact or elongated morphological categories. The compact type occur next to stream channels and have little internal disturbance of the displaced block, whereas the elongated types can develop on any part of the slope and exhibit greater internal deformation. Frequency distributions of length-to-width and length-to-depth ratios are similar at all sites. Positive pore pressures, expected theoretically, were measured in the field at the base of the thawing layer. Effective stress analysis could predict the instability of slopes in both areas, providing cohesion across the thaw plane was set to zero and/or residual strength parameters were employed. The location of the shear planes or zones in relation to the permafrost table and the degree of post-failure secondary movements (including headwall recession and thermokarst development within the failure track) differed between the localities, reflecting dissimilarity in the environmental triggers and in the degree of ground thermal disturbance.

  3. Winter Activity and Diapause of Aedes albopictus (Diptera: Culicidae) in Hanoi, Northern Vietnam.

    PubMed

    Tsunoda, Takashi; Chaves, Luis Fernando; Nguyen, Giang Thi Tra; Nguyen, Yen Thi; Takagi, Masahiro

    2015-11-01

    We studied the winter activity of Aedes albopictus (Skuse) from November 2008 to April 2009 in Bat Trang village of Hanoi, Vietnam. We selected 12 houses and collected: 1) adults with BG sentinel traps, 2) pupae from household water containers, and 3) eggs with ovitraps. Aedes albopictus adults, pupae, and eggs were not collected from early January to early February. Though the egg hatching probability tended to be initially high at longer day length, the maximum probability gradually shifted to shorter day length, as the observation period elapsed. When females were reared under long day length and their eggs were immersed 1 or 5 wk after oviposition, >50% of eggs hatched within 20 days. However, when females were reared under short day length and their eggs were immersed after 1 wk, hatching was suppressed for 60 days. When females were reared under short day length, the median hatching day occurred earlier in eggs kept dry for 5 and 10 wk after oviposition than in those dried for only 1 wk. This indicates that the extended dry periods accelerate egg hatching. Our results showed that hatchability gradually changed with day length, suggesting that selection for overwintering is not as strong relative to Ae. albopictus living in the temperate zone, where winter conditions are less favorable than in tropical and subtropical areas. PMID:26336261

  4. Identification of immunodiagnostic antigens for cerebrospinal filariasis in horses by western blot analysis

    PubMed Central

    TAKESUE, Masataka; OSAKA, Yuki; MURANAKA, Masanori; KATAYAMA, Yoshinari; IKADAI, Hiromi

    2016-01-01

    ABSTRACT In the present study, the serum and cerebrospinal fluid of horses diagnosed with Setaria digitata cerebrospinal filariasis were analyzed by western blot. The results revealed S. digitata protein bands measuring 65, 34, 22, and 18 kDa in molecular weight. In particular, the 18 kDa band is a possible candidate for clinical immunodiagnosis on the basis of western blot findings. PMID:27073332

  5. Accuracy of Reverse Dot-Blot PCR in Detection of Different β-Globin Gene Mutations.

    PubMed

    El-Fadaly, N; Abd-Elhameed, A; Abd-Elbar, E; El-Shanshory, M

    2016-06-01

    Prevention programs for β-thalassemia based on molecular diagnosis of heterozygous carriers and/or patients require the use of reliable mutation screening methods. The aim of this study was to compare between direct DNA sequencing, and reverse dot-blot PCR in detection of different β-globin gene mutations in Egyptian children with β-thalassemia. Forty children with β-thalassemia were subjected to mutation analysis, performed by both direct DNA sequencing and β-globin Strip Assay MED™ (based on reverse dot-blot PCR). The most frequent mutant alleles detected by reverse dot-blot PCR were; IVSI-110 G>A (31.25 %), IVS I-6 T > C (21.25 %), and IVS I-1 G>A (20 %). Relatively less frequent mutant alleles detected by reverse dot-blot PCR were "IVSII-1 G>A (5 %), IVSII-745 C>G (5 %), IVSII-848 C>A (2.5 %), IVSI-5 G>C (2.5 %), -87 C>G(2.5 %), and cd39 C>T (2.5 %)", While the genotypes of three patients (6 alleles 7.5 %) were not detected by reverse dot-blot PCR. Mutant alleles detected by direct DNA sequencing were the same as reverse dot-blot PCR method except it revealed the genotypes of 3 undetected patients (one patient was homozygous IVSI-110 G>A, and two patients were homozygous IVS I-1 G>A. Sensitivity of the reverse dot-blot PCR was 92.5 % when compared to direct DNA sequencing for detecting β-thalassemia mutations. Our results therefore suggest that, direct DNA sequencing may be preferred over reverse dot-blot PCR in critical diagnostic situations like genetic counseling for prenatal diagnosis. PMID:27065589

  6. Paleoseismology off northern Japan: Sediments in the Japan Trench record earthquake activity

    NASA Astrophysics Data System (ADS)

    Fink, H. G.; Ikehara, K.; Kanamatsu, T.; Nagahashi, Y.; Koelling, M.; Strasser, M.; Wefer, G.

    2013-12-01

    activity of the off Tohoku.

  7. Chemical composition and antibacterial activity of Pinus halepensis Miller growing in West Northern of Algeria

    PubMed Central

    Fekih, Nadia; Allali, Hocine; Merghache, Salima; Chaïb, Faïza; Merghache, Djamila; El Amine, Mohamed; Djabou, Nassim; Muselli, Alain; Tabti, Boufeldja; Costa, Jean

    2014-01-01

    Objective To find new bioactive natural products, the chemical composition and to sudy the antibacterial activity of essential oil components extracted from the aerial parts of the Algerian aromatic plant Pinus halepensis Miller (P. halepensis) (needles, twigs and buds). Methods The essential oil used in this study was isolated by hydrodistillation using a Clevenger-type apparatus according to the European Pharmacopoeia. The chemical composition was investigated using GC-retention indices (RI) and GC-MS. Results Forty-nine compounds, representing 97.9% of the total collective oil, were identified. Essential oil was dominated by hydrocarbon compounds (80.6%) especially monoterpenes (65.5%). The major compounds from ten oils stations were: myrcene (15.2%-32.0%), α-pinene (12.2%-24.5%), E-β-caryophyllene (7.0%-17.1%), terpinolene (1.8%-13.3%), 2-phenyl ethyl isovalerate (4.8%-10.9%), terpinene-4-ol (1.0%-8.2 %) and sabinene (1.5%-6.3%). The intra-species variations of the chemical compositions of P. halepensis aerial parts essential oils from ten Algerian sample locations were investigated using statistical analysis. Essential oil samples were clustered in 2 groups by hierarchical cluster analysis, according to their chemical composition. The essential oil revealed an interesting antimicrobial effect against Lysteria monocytogenes, Enterococcus faecalis, Pseudomonas aeruginosa, Acinetobacter baumanii, Citrobacter freundii and Klebsiella pneumoniae. Conclusions These results suggest that the essential oil from P. halepensis may be a new potential source as natural antimicrobial applied in pharmaceutical and food industries.

  8. Tracking of physical activity, fitness, body composition and diet from adolescence to young adulthood: The Young Hearts Project, Northern Ireland.

    PubMed

    Boreham, Colin; Robson, Paula J; Gallagher, Alison M; Cran, Gordon W; Savage, J Maurice; Murray, Liam J

    2004-10-01

    BACKGROUND: The assumption that lifestyles formed early in life track into adulthood has been used to justify the targeting of health promotion programmes towards children and adolescents. The aim of the current study was to use data from the Northern Ireland Young Hearts Project to ascertain the extent of tracking, between adolescence and young adulthood, of physical activity, aerobic fitness, selected anthropometric variables, and diet. METHODS: Males (n 245) and females (n 231) were assessed at age 15 y, and again in young adulthood [mean (SD) age 22 (1.6) y]. At both timepoints, height, weight and skinfold thicknesses were measured, and physical activity and diet were assessed by questionnaire and diet history method respectively. At 15y, fitness was assessed using the 20 metre shuttle run, while at young adulthood, the PWC170 cycle ergometer test was used. For each measurement made at 15y, subjects were ranked into 'low' (L1; lowest 25%), 'medium' (M1; middle 50%) or 'high' (H1; highest 25%) categories. At young adulthood, similar categories (L2, M2, H2) were created. The extent of tracking of each variable over time was calculated using 3 x 3 matrices constructed using these two sets of categories, and summarised using kappa (kappa) statistics. RESULTS: Tracking of diet and fitness was poor (kappa activity in males was fair (kappa 0.202), but was poor in females (kappa 0.021). In contrast, anthropometric variables such as weight, body mass index and sum of skinfolds tracked more strongly in females (kappa 0.540, kappa 0.307, kappa 0.357 respectively) than in males (kappa 0.337, kappa 0.199, kappa 0.216 respectively). CONCLUSIONS: The poor tracking of fitness and diet in both sexes, and physical activity in females, suggests that these aspects of adolescent lifestyle are unlikely to be predictive of behaviours in

  9. Heterogeneous GPS Velocity Field and Active Faults in the Northern Puget Lowland and San Juan Island Region of Northwestern Washington: First Results From the Northwest Washington Geodetic Network

    NASA Astrophysics Data System (ADS)

    Oldow, J. S.; Apel, E. V.

    2002-12-01

    Velocities from a dense GPS network in the northern Puget lowland and San Juan Island region of northwestern Washington support geological and geophysical investigations and suggest active deformation on several throughgoing fault systems. The Northwest Washington Geodetic Network (NWGN) consists of 27 sites along an east-northeast transect stretching from the Pacific coast on the Olympic Peninsula to east of the northern Cascade Range. GPS sites within the network are concentrated along a broad north-south swath covering the San Juan Islands, northern Puget lowland, western Cascade foothills, and the eastern Olympic Peninsula. Baselines in the central part of the network range between 10 and 50 km and provide the site density needed to assess whether or not specific fault zones within the region are active. Twenty four sites of the NWGN were successfully reoccupied in 2001, five years after the initial network deployment in 1996. Of the original sites, two were destroyed and one site solution was contaminated by multipathing. Site occupations in 1995 ranged from 24 to 48 hours and in 2001 all sites were occupied for 48 hours. Although based on only two occupations, the NWGN velocities are consistent with those determined for the wide aperture Pacific Northwest Geodetic Array and give us a degree of confidence in the validity of the solutions. In a fixed North American reference frame, NWGN sites show a west to east decrease in velocity from near the Pacific coast where displacements of ~18 mm/yr directed to the northeast progressively decrease to essentially zero in the foothills east of the northern Cascade Range. In the northern Puget lowland and San Juan Island region, the regional velocity field is characterized by substantial spatial variability. When effects of the locked Cascadia megathrust are removed, differential motions of up to 5 mm/yr are recognized within the central NWGN. The velocity field is heterogeneous with significant variations in azimuth and

  10. Seismological evidence of an active footwall shortcut thrust in the Northern Itoigawa-Shizuoka Tectonic Line derived by the aftershock sequence of the 2014 M 6.7 Northern Nagano earthquake

    NASA Astrophysics Data System (ADS)

    Panayotopoulos, Yannis; Hirata, Naoshi; Hashima, Akinori; Iwasaki, Takaya; Sakai, Shin'ichi; Sato, Hiroshi

    2016-06-01

    A destructive M 6.7 earthquake struck Northern Nagano prefecture on November 22, 2014. The main shock occurred on the Kamishiro fault segment of the northern Itoigawa-Shizuoka Tectonic Line (ISTL). We used data recorded at 41 stations of the local seismographic network in order to locate 2118 earthquakes that occurred between November 18 and November 30, 2014. To estimate hypocenters, we assigned low Vp models to stations within the Northern Fossa Magna (NFM) basin thus accounting for large lateral crustal heterogeneities across the Kamishiro fault. In order to further improve accuracy, the final hypocenter locations were recalculated inside a 3D velocity model using the double-difference method. We used the aftershock activity distribution and focal mechanism solutions of major events in order to estimate the source fault area of the main shock. Our analysis suggests that the shallow part of the source fault corresponds to the surface trace of the Kamishiro fault and dips 30°-45° SE, while the deeper part of the source fault corresponds to the downdip portion of the Otari-Nakayama fault, a high angle fault dipping 50°-65° SE that formed during the opening of the NFM basin in the Miocene. Along its surface trace the Otari-Nakayama fault has been inactive during the late Quaternary. We verified the validity of our model by calculating surface deformation using a simple homogeneous elastic half-space model and comparing it to observed surface deformation from satellite interferometry, assuming large coseismic slip in the areas of low seismicity and small coseismic slip in the areas of high seismicity. Shallowing of the source fault from 50°-65° to 30°-45° in the upper 4 km, in the areas where both surface fault traces are visible, is a result of footwall shortcut thrusting by the Kamishiro fault off the Otari-Nakayama fault.

  11. Telomere length measurement by a novel Luminex-based assay: a blinded comparison to Southern blot.

    PubMed

    Pierce, Brandon L; Jasmine, Farzana; Roy, Shantanu; Zhang, Chenan; Aviv, Abraham; Hunt, Steven C; Ahsan, Habibul; Kibriya, Muhammad G

    2016-01-01

    Telomere length (TL) is a potential biomarker of aging and age-related disease risk. We recently published a novel Luminex-based method for high-throughput, low-cost TL measurement. Here we describe a blinded comparison of the Luminex method to Southern blot, the most precise TL measurement method. Luminex and Southern blot measurements for the same 50 DNA samples were taken in two independent laboratories; each sample was measured twice, several months apart. The inter-assay CV for Luminex ranged from 5.5 to 9.1 (depending on CV estimation method), and Southern blot CV from 1.0 to 1.7. Both measures were inversely associated with age. The correlation between the repeated measurements was 0.66 for Luminex and 0.97 for Southern blot. The correlation between Southern blot and Luminex was 0.65 in round 1 and 0.75 in round 2, and the relationship showed no evidence of non-linearity. Our results demonstrate that the Luminex assay is a valid and reproducible method for high-throughput TL measurement. The Luminex assay involves no DNA amplification, which may make Luminex an attractive alternative to PCR-based TL measurement. PMID:27186324

  12. Telomere length measurement by a novel Luminex-based assay: a blinded comparison to Southern blot

    PubMed Central

    Pierce, Brandon L; Jasmine, Farzana; Roy, Shantanu; Zhang, Chenan; Aviv, Abraham; Hunt, Steven C; Ahsan, Habibul; Kibriya, Muhammad G

    2016-01-01

    Telomere length (TL) is a potential biomarker of aging and age-related disease risk. We recently published a novel Luminex-based method for high-throughput, low-cost TL measurement. Here we describe a blinded comparison of the Luminex method to Southern blot, the most precise TL measurement method. Luminex and Southern blot measurements for the same 50 DNA samples were taken in two independent laboratories; each sample was measured twice, several months apart. The inter-assay CV for Luminex ranged from 5.5 to 9.1 (depending on CV estimation method), and Southern blot CV from 1.0 to 1.7. Both measures were inversely associated with age. The correlation between the repeated measurements was 0.66 for Luminex and 0.97 for Southern blot. The correlation between Southern blot and Luminex was 0.65 in round 1 and 0.75 in round 2, and the relationship showed no evidence of non-linearity. Our results demonstrate that the Luminex assay is a valid and reproducible method for high-throughput TL measurement. The Luminex assay involves no DNA amplification, which may make Luminex an attractive alternative to PCR-based TL measurement. PMID:27186324

  13. Blot-MS of Carbonylated Proteins: A Tool to Identify Oxidized Proteins.

    PubMed

    Ferreira, Rita; Domingues, Pedro; Amado, Francisco; Vitorino, Rui

    2016-01-01

    The efficiency of proteostasis regulation declines during aging and the failure of protein homeostasis is common in age-related diseases. Protein oxidation is a major contributor to the loss of proteome homeostasis, also called "proteostasis," precluding protein misfolding and aggregation. So, the identification of the molecular pathways impaired by protein oxidation will increase the understanding of proteostasis and the pathophysiological conditions related to the loss of proteostasis. Sample derivatization with dinitrophenyl hydrazine and western blot immunoassay detection of carbonylated proteins (commonly known as Oxyblot™) coupled to mass spectrometry (blot-MS) is an attractive methodological approach to identify proteins that are more prone to carbonylation, a typical oxidative modification of amino acid residues. The integration of blot-MS data of carbonylated proteins with bioinformatics tools allows the identification of the biological processes more affected by protein oxidation and that, eventually, result in the loss of proteostasis.In this chapter, we describe a blot-MS methodology to identify the proteins more prone to oxidation in biological samples, as cell and tissue extracts, and biofluids. Analysis of mitochondria isolated from cardiac tissue is provided as an example. Bioinformatic strategy to deal with data retrieved from blot-MS experiments are proposed for the identification of relevant biological processes modulated by oxidative stress stimuli. PMID:27613049

  14. Protein analysis through Western blot of cells excised individually from human brain and muscle tissue

    PubMed Central

    Koob, A.O.; Bruns, L.; Prassler, C.; Masliah, E.; Klopstock, T.; Bender, A.

    2016-01-01

    Comparing protein levels from single cells in tissue has not been achieved through Western blot. Laser capture microdissection allows for the ability to excise single cells from sectioned tissue and compile an aggregate of cells in lysis buffer. In this study we analyzed proteins from cells excised individually from brain and muscle tissue through Western blot. After we excised individual neurons from the substantia nigra of the brain, the accumulated surface area of the individual cells was 120,000, 24,000, 360,000, 480,000, 600,000 μm2. We used an optimized Western blot protocol to probe for tyrosine hydroxylase in this cell pool. We also took 360,000 μm2 of astrocytes (1700 cells) and analyzed the specificity of the method. In muscle we were able to analyze the proteins of the five complexes of the electron transport chain through Western blot from 200 human cells. With this method, we demonstrate the ability to compare cell-specific protein levels in the brain and muscle and describe for the first time how to visualize proteins through Western blot from cells captured individually. PMID:22402104

  15. Optimized semi-quantitative blot analysis in infection assays using the Stain-Free technology.

    PubMed

    Zeitler, Anna F; Gerrer, Katrin H; Haas, Rainer; Jiménez-Soto, Luisa F

    2016-07-01

    Western blots are a commonly used method for protein detection and quantification in biological samples. Compensation of loading variations is achieved by housekeeping protein (HKP) normalization and/or total protein normalization (TPN). However, under infection conditions, HKP normalization, traditionally used in cell biology for quantification of western blots, can be problematic. Binding of microbes to target cells via specific receptors can induce signal transduction events resulting in drastic changes in the level of expression of HKPs. Additionally, samples collected after infection assays will include cellular and microbial proteins altering the analysis with TPN. Here we demonstrate under experimental infection conditions, how a reliable semi-quantitative analysis of proteins in western blots can be achieved using the Stain-Free technology. PMID:27150675

  16. Western blotting using in-gel protein labeling as a normalization control: stain-free technology.

    PubMed

    Gilda, Jennifer E; Gomes, Aldrin V

    2015-01-01

    Western blotting is a commonly used laboratory technique for semi-quantifying protein amounts. It is important when quantifying protein expression to account for differences in the amount of total protein loaded onto the gel using a loading control. Common loading controls include housekeeping proteins, such as β-actin or GAPDH, quantified by Western blot, or total protein, quantified using a stain such as Coomassie Brilliant Blue or Ponceau S. A more recently developed method for total protein quantification utilizes stain-free technology, which has a linear dynamic detection range and allows for protein detection on both gels and membranes. Here, we describe the theory and use of stain-free gels for total protein quantification and normalization of Western blots. PMID:25820735

  17. Development of a dot blot assay using gene probes for the detection of enteroviruses in water

    SciTech Connect

    Margolin, A.B.

    1986-01-01

    Enteric viruses are viruses which replicate in the intestinal tract of man and animals. One mode of transmission for enteric viruses is the fecal-oral route. Drinking water which has been contaminated with sewage or sewage effluent has been implicated as a means for the spread of enteric viruses. Current methods for the detection of enteric viruses in water requires the use of animal cell culture. This technique has several drawbacks. More rapid techniques, such as fluorescent antibody or radioimmunoassay do not have the needed sensitivity to detect the low levels of virus found in contaminated water. An alternative technique for the detection of viruses in water was sought. Recent advances in recombinant DNA technology now makes it possible to detect viruses without the use of cell culture or antibodies. Gene probes that hybridize to the RNA of poliovirus and hepatitis A virus were tested for their ability to detect different enteric viruses. The probes were labeled with /sup 32/P dCTP and /sup 32/P dATP to a specific activity greater then 1.0 x 10/sup 9/ cpm/ug DNA. One infectious unit of poliovirus and hepatitis A virus was detected using labeled cDNA probes. Upon comparison, the dot blot assay was as sensitive as tissue culture for the detection of poliovirus in beef extract, secondary effluent, and tap water. Environmental samples, such as secondary effluent, reclaimed wastewater and unchlorinated drinking water were also assayed for poliovirus and hepatitis A virus with the use of gene probes. The results presented here offer an alternative method for screening water samples for the presence of enteric viruses.

  18. Total protein or high-abundance protein: Which offers the best loading control for Western blotting?

    PubMed

    Thacker, Jonathan S; Yeung, Derrick H; Staines, W Richard; Mielke, John G

    2016-03-01

    Western blotting routinely involves a control for variability in the amount of protein across immunoblot lanes. Normalizing a target signal to one found for an abundantly expressed protein is widely regarded as a reliable loading control; however, this approach is being increasingly questioned. As a result, we compared blotting for two high-abundance proteins (actin and glyceraldehyde 3-phosphate dehydrogenase [GAPDH]) and two total protein membrane staining methods (Ponceau and Coomassie Brilliant Blue) to determine the best control for loading variability. We found that Ponceau staining optimally balanced accuracy and precision, and we suggest that this approach be considered as an alternative to normalizing with a high-abundance protein. PMID:26706797

  19. Higher Education and Regional Development. A Compendium of Public Service Activities by Colleges and Universities in Northern New York.

    ERIC Educational Resources Information Center

    Chugh, Ram L.

    A study was done of the public service programs of the colleges and universities of the Adirondack North Country Association (ANCA) region and how they contribute to the regional development of northern New York State. The study asked the 21 institutions of the ANCA area to respond to a survey seeking information on various aspects of each…

  20. Relationships between soil heavy metal pollution and enzyme activities in mining areas of northern Hunan province, Central South China

    NASA Astrophysics Data System (ADS)

    Hu, Xue-Feng; Jiang, Ying; Shu, Ying

    2014-05-01

    Hunan province, Central South China, is a well-known nonferrous metal base in China. Mine exploiting and processing there, however, often lead to heavy metal pollution of farmland. To study the effects of mining activities on the soil environmental quality, four representative paddy fields, the HSG, SNJ, NT and THJ, in Y county, northern Hunan province, were investigated. It was found that the streams running through the HSG, SNJ and NT are severely contaminated due to the long-term discharge of untreated mineral wastewater from local indigenous mining factories. The stream at the HSG, for example, is brownish red in color, with high concentrations of Cu, Zn, Cd, Fe and Mn. The concentrations of Cu, Zn and Cd in all the stream water of the HSG, SNJ and NT exceed the maximum allowable levels of the Agricultural Irrigation Water Criteria of China. Correspondingly, the HSG, SNJ and NT are heavily polluted by Cu, Zn and Cd due to the long-term irrigation with the contaminated stream water. In comparison, both stream water and paddy fields of the THJ, far away from mining areas, are not contaminated by any heavy metals and hence regarded as a control in this study. The rice grain produced at the HSG, SNJ and NT has a high risk of Cd contamination. The rate of rice grain produced in the four paddy fields in Y county with Cd exceeding the safe level (Cd, 0.2 μg g-1) specified by the National Standards for Rice Quality and Safety of China reaches 90%. Cd content in the rice grain is positively significantly correlated with that in the paddy fields, especially with the content of diethylenetriaminepentaacetic acid (DTPA) - extracted Cd, suggesting that the heavy metal pollution of paddy fields has already posed a high risk to rice safety and human health. Soil enzyme activities and microbial biomass are significantly inhibited by the heavy metal pollution of the paddy fields. Microbial biomass C and N (MBC and MBN) at a severely contaminated site of the HSG are only 31

  1. Evidence for enhanced debris flow activity in the Northern Calcareous Alps since the 1980s (Plansee, Austria)

    NASA Astrophysics Data System (ADS)

    Dietrich, Andreas; Krautblatter, Michael

    2016-04-01

    From 1950 to 2011 almost 80.000 people lost their lives through the occurrence of debris flow events (Dowling and Santi, 2014). Debris flows occur in all alpine regions due to intensive rainstorms and mobilisable loose debris. Due to their susceptible lithology, the Northern Calcareous Alps are affected by a double digit number of major hazard events per year. Some authors hypothesised a relation between an increasing frequency of heavy rainstorms and an increasing occurrence of landslides in general (Beniston and Douglas, 1996) and debris flows in special (Pelfini and Santilli, 2008), but yet there is only limited evidence. The Plansee catchment in the Ammergauer Alps consists of intensely jointed Upper Triassic Hauptdolomit lithology and therefore shows extreme debris flow activity. To investigate this activity in the last decades, the temporal and spatial development of eight active debris flow fans is examined with GIS and field mapping. The annual rates since the late 1940s are inferred accurately by using aerial photos from 1947, 1952, 1971, 1979, 1987, 2000 and 2010. These rates are compared to the mean Holocene/Lateglacial debris flow volume derived from the most prominent cone. The contact with the underlying till is revealed by electrical resistivity tomography (ERT). It shows that the mean annual debris flow volume has increased there by a factor of 10 from 1947-1952 (0.23 ± 0.07 10³m³/yr) to 1987-2000 (2.41 ± 0.66 10³m³/yr). A similar trend can be seen on all eight fans: mean post-1980 rates exceed pre-1980 rates by a factor of more than three. This increasing debris flow activity coincides with an enhanced rainstorm (def. 35 mm/d) frequency recorded at the nearest meteorological station. Since 1921 the frequency of heavy rainstorms has increased there on average by 10% per decade. Recent debris flow rates are also 2-3 times higher compared to mean Holocene/Lateglacial rates. Furthermore, we state a strong correlation between the non

  2. Ferulic acid enhances IgE binding to peanut allergens in western blots.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phenolic compounds at high concentrations are known to form insoluble complexes with proteins. We hypothesized that this complex formation could interfere with Western blot and ELISA assays for peanut allergens. To verify this, three simple phenolic compounds (ferulic, caffeic, and chlorogenic acids...

  3. Ferulic acid enhances IgE binding to peanut allergens in western blots.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Because phenolic compounds can precipitate or complex with proteins, we postulated that interactions of phenolics with IgE antibodies help enhance IgE binding to peanut allergens in Western blots. Three different phenolics, such as, ferulic, caffeic and chlorogenic acids were examined. Each was mixe...

  4. Better management of Western blotting results using professional photo management software.

    PubMed

    Iorio-Morin, Christian; Germain, Pascale; Parent, Jean-Luc

    2013-04-01

    Western blotting is a proven technique essential to a significant proportion of molecular biology projects. However, as results accumulate over the years, managing data can become daunting. Recognizing that the needs of a scientist working with Western blotting results are conceptually the same as those of a professional photographer managing a summer's worth of wedding photos, we report here a new workflow for managing Western blotting results using professional photo management software. The workflow involves (i) scanning all film-based results; (ii) importing the scans into the software; (iii) processing the scans; (iv) tagging the files with metadata, and (v) creating appropriate "smart-albums." Advantages of this system include space savings (both on our hard drives and on our desks), safer archival, quicker access, and easier sharing of the results. In addition, metadata-based workflows improve cross-experiment discovery and enable questions like "show me all blots labelled with antibody X" or "show me all experiments featuring protein Y". As project size and breadth increase, workflows delegating results management to the computer will become more and more important so that scientists can keep focussing on science. PMID:23404762

  5. Line scanning system for direct digital chemiluminescence imaging of DNA sequencing blots

    SciTech Connect

    Karger, A.E.; Weiss, R.; Gesteland, R.F. Eccles Inst. of Human Genetics, Salt Lake City, UT )

    1993-07-01

    A cryogenically cooled charge-coupled device (CCD) camera equipped with an area CCD array is used in a line scanning system for low-light-level imaging of chemiluminescent DNA sequencing blots. Operating the CCD camera in time-delayed integration (TDI) mode results in continuous data acquisition independent of the length of the CCD array. Scanning is possible with a resolution of 1.4 line pairs/mm at the 50% level of the modulation transfer function. High-sensitivity, low-light-level scanning of chemiluminescent direct-transfer electrophoresis (DTE) DNA sequencing blots is shown. The detection of DNA fragments on the blot involves DNA-DNA hybridization with oligonucleotide-alkaline phosphatase conjugate and 1,2-dioxetane-based chemiluminescence. The width of the scan allows the recording of up to four sequencing reactions (16 lanes) on one scan. The scan speed of 52 cm/h used for the sequencing blots corresponds to a data acquisition rate of 384 pixels/s. The chemiluminescence detection limit on the scanned images is 3.9 [times] 10[sup [minus]18] mol of plasmid DNA. A conditional median filter is described to remove spikes caused by cosmic ray events from the CCD images. 39 refs., 9 refs.

  6. A Guide to Modern Quantitative Fluorescent Western Blotting with Troubleshooting Strategies

    PubMed Central

    Eaton, Samantha L.; Hurtado, Maica Llavero; Oldknow, Karla J.; Graham, Laura C.; Marchant, Thomas W.; Gillingwater, Thomas H.; Farquharson, Colin; Wishart, Thomas M.

    2014-01-01

    The late 1970s saw the first publicly reported use of the western blot, a technique for assessing the presence and relative abundance of specific proteins within complex biological samples. Since then, western blotting methodology has become a common component of the molecular biologists experimental repertoire. A cursory search of PubMed using the term “western blot” suggests that in excess of two hundred and twenty thousand published manuscripts have made use of this technique by the year 2014. Importantly, the last ten years have seen technical imaging advances coupled with the development of sensitive fluorescent labels which have improved sensitivity and yielded even greater ranges of linear detection. The result is a now truly Quantifiable Fluorescence based Western Blot (QFWB) that allows biologists to carry out comparative expression analysis with greater sensitivity and accuracy than ever before. Many “optimized” western blotting methodologies exist and are utilized in different laboratories. These often prove difficult to implement due to the requirement of subtle but undocumented procedural amendments. This protocol provides a comprehensive description of an established and robust QFWB method, complete with troubleshooting strategies. PMID:25490604

  7. A Streamlined Western Blot Exercise: An Efficient and Greener Approach in the Laboratory Classroom

    ERIC Educational Resources Information Center

    Ness, Traci L.; Robinson, Rebekah L.; Mojadedi, Wais; Peavy, Lydia; Weiland, Mitch H.

    2015-01-01

    SDS-PAGE and western blotting are two commonly taught protein detection techniques in biochemistry and molecular biology laboratory classrooms. A pitfall associated with incorporating these techniques into the laboratory is the significant wait times that do not allow students to obtain timely results. The waiting associated with SDS-PAGE comes…

  8. Effects of Reusing Gel Electrophoresis and Electrotransfer Buffers on Western Blotting

    PubMed Central

    Omotola, Oluwabukola B.; Heda, Rajiv P.; Avery, Jamie

    2016-01-01

    SDS-PAGE and Western blotting are 2 of the most commonly used biochemical methods for protein analysis. Proteins are electrophoretically separated based on their MWs by SDS-PAGE and then electrotransferred to a solid membrane surface for subsequent protein-specific analysis by immunoblotting, a procedure commonly known as Western blotting. Both of these procedures use a salt-based buffer, with the latter procedure consisting of methanol as an additive known for its toxicity. Previous reports present a contradictory view in favor or against reusing electrotransfer buffer, also known as Towbin’s transfer buffer (TTB), with an aim to reduce the toxic waste. In this report, we present a detailed analysis of not only reusing TTB but also gel electrophoresis buffer (EB) on proteins of low to high MW range. Our results suggest that EB can be reused for at least 5 times without compromising the electrophoretic separation of mixture of proteins in an MW standard, BSA, and crude cell lysates. Additionally, reuse of EB did not affect the quality of subsequent Western blots. Successive reuse of TTB, on the other hand, diminished the signal of proteins of different MWs in a protein standard and a high MW membrane protein cystic fibrosis transmembrane-conductance regulator (CFTR) in Western blotting. PMID:27582639

  9. COMPARISONS OF ELISA AND WESTERN BLOT ASSAYS FOR DETECTION OF CRYPTOSPORIDIUM ANTIBODY

    EPA Science Inventory

    A seroprevalence survey was conducted using ELISA and Western blot (WB) assays for antibody to three Cryptosporidium antigens on 380 blood donors in Jackson County, Oregon. The purpose was to determine if either assay could detect serological evidence of an outbreak which occurre...

  10. A Study of Rubisco through Western Blotting and Tissue Printing Techniques

    ERIC Educational Resources Information Center

    Ma, Zhong; Cooper, Cynthia; Kim, Hyun-Joo; Janick-Buckner, Diane

    2009-01-01

    We describe a laboratory exercise developed for a cell biology course for second-year undergraduate biology majors. It was designed to introduce undergraduates to the basic molecular biology techniques of Western blotting and immunodetection coupled with the technique of tissue printing in detecting the presence, relative abundance, and…

  11. Effects of Reusing Gel Electrophoresis and Electrotransfer Buffers on Western Blotting.

    PubMed

    Heda, Ghanshyam D; Omotola, Oluwabukola B; Heda, Rajiv P; Avery, Jamie

    2016-09-01

    SDS-PAGE and Western blotting are 2 of the most commonly used biochemical methods for protein analysis. Proteins are electrophoretically separated based on their MWs by SDS-PAGE and then electrotransferred to a solid membrane surface for subsequent protein-specific analysis by immunoblotting, a procedure commonly known as Western blotting. Both of these procedures use a salt-based buffer, with the latter procedure consisting of methanol as an additive known for its toxicity. Previous reports present a contradictory view in favor or against reusing electrotransfer buffer, also known as Towbin's transfer buffer (TTB), with an aim to reduce the toxic waste. In this report, we present a detailed analysis of not only reusing TTB but also gel electrophoresis buffer (EB) on proteins of low to high MW range. Our results suggest that EB can be reused for at least 5 times without compromising the electrophoretic separation of mixture of proteins in an MW standard, BSA, and crude cell lysates. Additionally, reuse of EB did not affect the quality of subsequent Western blots. Successive reuse of TTB, on the other hand, diminished the signal of proteins of different MWs in a protein standard and a high MW membrane protein cystic fibrosis transmembrane-conductance regulator (CFTR) in Western blotting. PMID:27582639

  12. Orbital changes, variation in solar activity and increased anthropogenic activities: controls on the Holocene flood frequency in the Lake Ledro area, Northern Italy

    NASA Astrophysics Data System (ADS)

    Vannière, B.; Magny, M.; Joannin, S.; Simonneau, A.; Wirth, S. B.; Hamann, Y.; Chapron, E.; Gilli, A.; Desmet, M.; Anselmetti, F. S.

    2012-09-01

    Two lacustrine sediment cores from Lake Ledro in Northern Italy were studied to produce chronologies of flood events for the past 10 000 yr. For this purpose, we have developed an automatic method that objectively identifies the sedimentary imprint of river floods in the downstream lake basin. The automatic counting of flood deposits was based on colour data extracted from processed core photographs, and the count data were processed to capture the flood signal. Automatic quantification was compared with naked-eye counting. Counts were performed twice on the proximal and distal cores to provide an objective and reproducible record of flood frequency. Geophysical and geochemical analyses made it possible to distinguish event deposits from background sedimentation. Flood frequency and reconstructed sedimentary dynamics were compared with lake-level changes and pollen dynamics inferred from vegetation data. The data suggest a record marked by low flood frequency during the early and middle Holocene (10 000-4500 cal BP). Only modest increases during short intervals are recorded at ca. 8000, 7500, and 7100 cal BP. The last third of the Holocene is characterised by a shift toward increased flood frequency at ca. 4500-4000 cal BP. With the exception of two short intervals around 2900-2500 and 1800-1400 cal BP, which show a slightly reduced number of floods, the trend of increasing flood frequency prevailed until the 20th century, reaching a maximum between the 16th and the 19th centuries. Brief-flood frequency increases recorded during the early and middle Holocene can be attributed to cold climatic oscillations. On a centennial time scale, major changes in flood frequency, such as those observed at ca. 4500 and 500 cal BP, can be attributed to large-scale climatic changes such as the Neo-glacial and Little Ice Age, which are under orbital and possibly solar control. The role of climate as the main forcing factor in flood activity is supported by the lake-level records

  13. Evaluation of immunoglobulin M western blot analysis in the diagnosis of congenital syphilis.

    PubMed Central

    Lewis, L L; Taber, L H; Baughn, R E

    1990-01-01

    Western immunoblots of solubilized Treponema pallidum antigens were reacted with sera and cerebrospinal fluid (CSF) and developed with enzyme-conjugated antibodies to immunoglobulin M (IgM). A blot was considered positive if reactions included bands at the 47-, 17-, and 15.5-kilodalton positions along with a variable pattern at other low-molecular-weight positions. Sera from 23 of 25 symptomatic infants diagnosed with congenital syphilis yielded positive reactions. Of 80 asymptomatic infants considered at risk for developing symptomatic infection, 16 exhibited IgM patterns consistent with those seen in congenital syphilis, although 5 of these 16 gave reactions that were equivocal. To exclude false-positive reactions due to IgM rheumatoid factor, sera were fractionated and the IgM fractions were retested. Only the five initially equivocal sera gave nonreactive blots with the IgM fractions, whereas all others gave more prominent reactions that were qualitatively similar to those seen in serum samples. Sera from 18 normal infants failed to show any IgM reactivity to T. pallidum antigens on Western blots. The IgM Western blot was both more sensitive and more specific than the fluorescent treponemal antibody-absorbed (IgM) test using fractionated serum. Of the 17 CSF samples from infants with symptomatic congenital syphilis, 14 showed IgM reactivity in Western blots, whereas only 12 had a reactive CSF in the Venereal Disease Research Laboratory test. Our results indicate that this technique can be used to identify both symptomatic and asymptomatic infection in infants with T. pallidum, in some cases before standard serologic studies can confirm the diagnosis. Images PMID:2179261

  14. Mid to late Holocene aeolian activity revealed by a multiproxy peat record in continental CE Europe (Northern Romania)

    NASA Astrophysics Data System (ADS)

    Panait, Andrei Marian; Feurdean, Angelica; Hutchinson, Simon Mark; Tanţǎu, Ioan

    2016-04-01

    Peat bogs, and especially ombrogenous mire, are increasingly used as continental archives of aeolian dust and sand deposition. Since ombrogenous peat is formed above ground water level all the inputs are atmospheric. Dust is more influenced by regional climatic patterns due to its small size, whereas sand tends to record local patterns in storm frequency and intensity reflecting its larger particle size. However, both size fractions are significantly underused proxies of past climate variability. Here, an ombrogenous peat profile from Tǎul Muced in the Rodnei Mountains (Northern Romanian Carpathians), located in a temperate continental climate, with Atlantic and Baltic influences, provides the very first record of mid to late Holocene aeolian activity from Romania highlighting the interplay between local and regional controls in a continental area of CE Europe. We use a multiproxy approach combining radiocarbon dating, the physical properties of the peat (loss-on-ignition, bulk density), mineral magnetic measurements (ARM, SIRM), geochemical (Ti and Zr) and particle size analysis (via both laser diffraction and the manual counting of sand particles under a steromicroscope) to determine changes in: i) atmospheric dust deposition and ii) wind velocities during the last 7800 years. We found that the aeolian particles are mainly silt (3.9-63 μm) (dust) and sand (63-1200 μm). The mineralogical composition of the aeolian sediment in peat is mainly quartz, more rarely calcite and very rarely other minerals such as feldspar, sulphur, mica (biotite and muscovite), magnetite and other melanocrate minerals. The roundness of the sand particles varies from well-rounded to sub-angular and angular, and suggests that the sand particles have different source areas. Results from this study show that over the last 7600 years the pattern of wind frequency changed several times: there are periods characterised by a low aeolian input around 6950-6550, 5000-3900, 3500-2900, 1650

  15. Deep geometry and evolution of the northern part of Itoigwa-Shizuoka Tectonic Line active fault system, Central Japan, revealed by Seismic profiling

    NASA Astrophysics Data System (ADS)

    Sato, H.; Ikeda, Y.; Iwasaki, T.; Matsuta, N.; Takeda, T.; Kawasaki, S.; Kozawa, T.; Elouai, D.; Hirata, N.; Kawanaka, T.

    2003-12-01

    The northern Fossa Magna (NFM) is a Miocene rift system produced in the final stages of the opening of the Sea of Japan. It divides the major structure of Japan into SW and NE portions. The Itoigawa-Shizuoka Tectonic Line (ISTL) bounds the western part of the northern Fossa Magna and forms an active fault system showing the one of the largest slip rates in the Japanese islands. Based on the paleo-seismological data, the ISTL active fault system was evaluated to have the highest seismic risk among active faults within inland Japan. A quantitative understanding of active tectonic processes, including crustal deformation and related destructive earthquakes, is important in reducing seismic hazards through precise estimation of strong ground motions. The structure of the crust, especially the deep geometry of active fault systems, is the most important piece information required to construct such a dynamic model. In this context, the seismic reflection profiling was performed across the northern part of the ISTL active fault system by three seismic lines. Obtained seismic sections are interpreted based on the pattern of reflectors, surface geology and velocity model by refraction analysis, using the balanced cross section technique. The 68-km-long Itoshizu 2002 seismic section across the northern middle part of the ISTL active fault system suggest that the Miocene NFM basin was formed by an east dipping normal fault with shallow flat (6 km), deeper ramp (6 15 km) and deeper flat at 15 km in depth. This unique geometry is interpreted that this low-angle normal fault was produced by Miocene high thermal regime, estimated from the thick volcanic rocks at the base of the basin fill. Namely, the normal fault reflects the brittle-ductile boundary in Miocene. Consequently, since the Pliocene, the basin fill was strongly folded by the reverse faulting along the pre-existing normal faults in the Pre-Neogene rocks. The reverse faults in the basin fill produced fault

  16. Orbital changes, variation in solar activity and increased anthropogenic activities: controls on the Holocene flood frequency in the Lake Ledro area, Northern Italy

    NASA Astrophysics Data System (ADS)

    Vannière, B.; Magny, M.; Joannin, S.; Simonneau, A.; Wirth, S. B.; Hamann, Y.; Chapron, E.; Gilli, A.; Desmet, M.; Anselmetti, F. S.

    2013-05-01

    Two lacustrine sediment cores from Lake Ledro in northern Italy were studied to produce chronologies of flood events for the past 10 000 yr. For this purpose, we have developed an automatic method that objectively identifies the sedimentary imprint of river floods in the downstream lake basin. The method was based on colour data extracted from processed core photographs, and the count data were analysed to capture the flood signal. Flood frequency and reconstructed sedimentary dynamics were compared with lake-level changes and pollen inferred vegetation dynamics. The results suggest a record marked by low flood frequency during the early and middle Holocene (10 000-4500 cal BP). Only modest increases during short intervals are recorded at ca. 8000, 7500, and 7100 cal BP. After 4500-4000 cal BP, the record shows a shift toward increased flood frequency. With the exception of two short intervals around 2900-2500 and 1800-1400 cal BP, which show a slightly reduced number of floods, the trend of increasing flood frequency prevailed until the 20th century, reaching a maximum between the 16th and the 19th centuries. Brief-flood frequency increases recorded during the early and middle Holocene can be attributed to cold climatic oscillations. On a centennial time scale, major changes in flood frequency, such as those observed after ca. 4500/4000 and 500 cal BP, can be attributed to large-scale climatic changes such as the Neo-glacial and Little Ice Age, which are under orbital and possibly solar control. However, in the Bronze Age and during the Middle Ages and modern times, forest clearing and land use probably partially control the flood activity.

  17. Long- and short-term deformation along the active northern margin of the hyblean plateau (se sicily) from multidisciplinary data: evidence for a new potential seismogenic source

    NASA Astrophysics Data System (ADS)

    Bonforte, Alessandro; Catalano, Stefano; Maniscalco, Rosanna; Pavano, Francesco; Romagnoli, Gino; Sturiale, Giovanni; Tortorici, Giuseppe

    2014-05-01

    A geologic and geodetic integrated analysis of the northern margin of the Hyblean Plateau (SE Sicily) has been carried out in order to test the relation of the active deformation, recorded by GPS data, and the long-term tectonic evolution, recorded by structural and morphological data, with potential seismogenic sources of the region, where high level (MCS I0 = X - XI) historical seismicity occurred. To date, seismotectonic models have alternatively related the main seismogenic sources to the incipient rifting that reactivated the Malta Escarpment in the Ionian off-shore or to the still active NW-SE trending Nubia-Eurasia convergence, that remobilized the northern tectonic boundary of the Hyblean Plateau. In this region, the new data reveal that the active deformation can be framed in the flexural tectonics developed during the late stages of the Nubia-Eurasia plate convergence. Geodetic and geological data provide a coherent kinematic picture that is compatible with the occurrence of a blind ramp thrust along the NW margin of the Hyblean Plateau. This study demonstrates that the onshore seismicity of the Hyblean region can be confidently referred to active compressional dynamics. Additionally, our data candidate the inferred blind thrust, located to the south of the Scordia-Lentini graben, as a major potential seismogenic source that might be considered in interpreting the historical seismicity of the region.

  18. Identifying buried segments of active faults in the northern Rio Grande Rift using aeromagnetic, LiDAR,and gravity data, south-central Colorado, USA

    USGS Publications Warehouse

    Ruleman, Cal; Grauch, V. J.

    2013-01-01

    Combined interpretation of aeromagnetic and LiDAR data builds on the strength of the aeromagnetic method to locate normal faults with significant offset under cover and the strength of LiDAR interpretation to identify the age and sense of motion of faults. Each data set helps resolve ambiguities in interpreting the other. In addition, gravity data can be used to infer the sense of motion for totally buried faults inferred solely from aeromagnetic data. Combined interpretation to identify active faults at the northern end of the San Luis Basin of the northern Rio Grande rift has confirmed general aspects of previous geologic mapping but has also provided significant improvements. The interpretation revises and extends mapped fault traces, confirms tectonic versus fluvial origins of steep stream banks, and gains additional information on the nature of active and potentially active partially and totally buried faults. Detailed morphology of surfaces mapped from the LiDAR data helps constrain ages of the faults that displace the deposits. The aeromagnetic data provide additional information about their extents in between discontinuous scarps and suggest that several totally buried, potentially active faults are present on both sides of the valley.

  19. Direct assay of thymidine kinase bound to ion-exchange paper for dot spotting and enzyme blotting analysis

    SciTech Connect

    van den Berg, K.J.

    1986-05-15

    The direct assay of thymidine kinase (Tk) bound to ion-exchange paper was investigated as a means to further simplify the analytical procedure. Thymidine kinase bound firmly and quantitatively to ion-exchange paper at near neutral pH. The enzymatic properties of Tk did not change while bound to the ion-exchange paper. The amount of phosphorylated /sup 12//sub 5/IdU or /sup 125/IdC formed on ion-exchange paper was proportional to the amount of applied Tk. Enzymatic activity could be determined visually by autoradiography or by gamma counting. This method was relatively independent of the protein concentration or volume of the sample and which allows the assay from dilute solutions. A simplified dot spot method that can be used for the assay of thymidine kinase activity in cell extracts is described. Thymidine kinase could also be visualized after electrophoresis and blotting on ion-exchange paper.

  20. Northern Nutrition.

    ERIC Educational Resources Information Center

    Northwest Territories Dept. of Education, Yellowknife.

    This guide contains nutrition information and nutrition education strategies aimed at residents of the Canadian Arctic. Section I: (1) defines nutrition terms; (2) describes the sources and functions of essential nutrients; (3) explains Canada's food guide and special considerations for the traditional northern Native diet and for lactose…

  1. High Rossby-wave activity in austral winter 2002: Modulation of the general circulation of the MLT during the MaCWAVE/MIDAS northern summer program

    NASA Astrophysics Data System (ADS)

    Becker, E.; Müllemann, A.; Lübken, F.-J.; Körnich, H.; Hoffmann, P.; Rapp, M.

    2004-10-01

    The seasonally and zonally averaged effects of the anomalously strong Rossby-wave activity in austral winter 2002 are estimated by a sensitivity experiment using an idealized general circulation model. The approach focuses on the modulation of gravity-wave saturation via the altered mean winds in the mesosphere and MLT. In the northern summer MLT the effects consist of increased vertical gradients of the mean zonal wind and temperature, as well as downward shifts of the residual circulation and the gravity wave-induced frictional heating. All these signals agree reasonably with observations obtained during the MaCWAVE/MIDAS program 2002.

  2. Dot Blot Assay for Detection of Antidiacyltrehalose Antibodies in Tuberculous Patients

    PubMed Central

    Vera-Cabrera, Lucio; Rendon, Adrian; Diaz-Rodriguez, Manuel; Handzel, Vera; Laszlo, Adalbert

    1999-01-01

    A simple dot blot test with diacyltrehalose (DAT) as the antigen was developed to detect anti-DAT antibodies in tuberculous patients. To enhance antigen-antibody reaction detection, rabbit serum raised against human immunoglobulins was used prior to incubation with a protein A-colloidal gold complex. With the dot blot system, it was possible to obtain a sensitivity similar to that of enzyme-linked immunosorbent assay (ELISA) and a specificity of 97.14%, versus a specificity of 94.29% by the ELISA. We conclude that this simple and fast assay could be used in places where ELISA equipment is not easy available and that it might also be applicable with other Mycobacterium tuberculosis immunogenic antigens. PMID:10473518

  3. Solid-phase assay for the phosphorylation of proteins blotted on nitrocellulose membrane filters

    SciTech Connect

    Valtorta, F.; Schiebler, W.; Jahn, R.; Ceccarelli, B.; Greengard, P.

    1986-10-01

    A new procedure for the phosphorylation and assay of phosphoproteins is described. Proteins are solubilized from tissue samples, separated by polyacrylamide gel electrophoresis, transferred onto nitrocellulose membrane filters, and the blotted polypeptides are phyosphorylated with the catalytic subunit of cyclic AMP (adenosine 3':5'-monophosphate)-dependent protein kinase. The method was developed for the assay of dephosphosynapsin I, but it has also proven suitable for the phosphorylation of other proteins. The patterns of phosphorylation of tissue samples phosphorylated using the new method are similar to those obtained using the conventional test tube assay. Once phosphorylated, the adsorbed proteins can be digested with proteases and subjected to phosphopeptide mapping. The phosphorylated blotted proteins can also be analyzed by overlay techniques for the immunological detection of polypeptides.

  4. Detection of Diverse and High Molecular Weight Nesprin-1 and Nesprin-2 Isoforms Using Western Blotting.

    PubMed

    Carthew, James; Karakesisoglou, Iakowos

    2016-01-01

    Heavily utilized in cell and molecular biology, western blotting is considered a crucial technique for the detection and quantification of proteins within complex mixtures. In particular, the detection of members of the nesprin (nuclear envelope spectrin repeat protein) family has proven difficult to analyze due to their substantial isoform diversity, molecular weight variation, and the sheer size of both nesprin-1 and nesprin-2 giant protein variants (>800 kDa). Nesprin isoforms contain distinct domain signatures, perform differential cytoskeletal associations, occupy different subcellular compartments, and vary in their tissue expression profiles. This structural and functional variance highlights the need to distinguish between the full range of proteins within the nesprin protein family, allowing for greater understanding of their specific roles in cell biology and disease. Herein, we describe a western blotting protocol modified for the detection of low to high molecular weight (50-1000 kDa) nesprin proteins. PMID:27147045

  5. A Fast and Inexpensive Western Blot Experiment for the Undergraduate Laboratory

    NASA Astrophysics Data System (ADS)

    Farrell, Shawn O.; Farrell, Lynn E.

    1995-08-01

    Western blotting is an important, modern technique for transferring proteins from a gel onto nitrocellulose or other suitable support and then detecting a protein of interest using antibodies. We have developed an experiment and optimized the conditions for the undergraduate laboratory. The experiment can be done quickly using an electrophoretic blotter or more cheaply using passive transfer. This experiment allows the student to learn valuable procedures currently used in biochemistry and other biological sciences.

  6. PCR versus Southern blot detection of somatic mosaicism in fragile X syndrome

    SciTech Connect

    Mueller, O.T.; Amar, M.J.A.; Gallardo, L.A.; Kousseff, B.G.

    1994-09-01

    The incidence of somatic mosaicism in males with fragile X syndrome has been reported to be as high as 17% of all clinically affected males. Mosaic cases usually do not show the cytogenetic fragile site at Xq27.3 and generally are fully affected according to the clinical criteria, although some subjects show somewhat milder symptoms. Detection of mosaicism relies on the identification of multiple distinct sizes of the CGG size anomaly in the 5{prime} untranslated exon of the FMR-1 gene. Some alleles identified are of a premutation size with trinucleotides numbering 50 to 80 X CGG. In addition, there is a greatly expanded allele with well over 200 copies of the CGG repeat detected. We screened 314 subjects for fragile X syndrome over a three year period. Cases were routinely screened by Southern blotting using the StB12.3 probe as well as by polymerase chain reaction. The PCR amplification products were electrophoresed in agarose, blotted and hybridized with a (CGG){sub 5} oligonucleotide followed by chemiluminescent detection. Seventeen males and 16 females were identified with a CGG expansion, including two males with premutations with repeat sizes of between 50 and 100 CGG trinucleotides and three cases exhibiting somatic mosaicism. The mosaic cases had both a premutation-sized allele and one or more expanded alleles of over 250 CGG copies. The mosaic cases were usually undetected with Southern blotting but easily identified with this PCR protocol. The relative proportion of the expanded allele as determined by scanning densitometry were 70%, 35%, and 5% in the three cases. All three cases were cytogenetically negative. The clinical severity of the mosaic cases was variable, with symptoms ranging from severe MR with most of the physical stigmata to mild learning disability. In our experience, Southern blotting allows more accurate sizing of the expanded allele; however, PCR is essential to identify cases that exhibit mosaicism.

  7. A slot blot procedure for the measurement of yessotoxins by a functional assay.

    PubMed

    Pierotti, Silvia; Albano, Clara; Milandri, Anna; Callegari, Federica; Poletti, Roberto; Rossini, Gian Paolo

    2007-01-01

    We originally developed a functional assay for the detection of yessotoxins (YTX) based on its capacity to induce dose-dependent changes in cellular levels of two marker proteins, consisting of E-cadherin and an E-cadherin fragment (ECRA100) in epithelial cells. The procedure is time-consuming and we have shortened it by a slot blot format, using antibodies recognizing two different epitopes of E-cadherin (HECD-1 and C20820), thereby discriminating those markers. The best performing membrane under our conditions, in terms of binding capacity and even absorption of proteins, was a positively charged nylon membrane. Treatment of the membrane with 0.5mug of Ab/ml was appropriate for maximal detection of antigens by our slot blot procedure with both HECD-1 and C20820 antibodies. The treatment of cells with YTX, resulting in a relative increase in the cellular levels of ECRA100, led to a dose-dependent increase of the signal detected by Ab HECD-1 without a concomitant increase in the signal detected by Ab C20820 in our slot blot format, and the concentrations of YTX were correlated to both the increase of the signal detected through Ab HECD-1 and to the decrease in the ratio of the signals obtained with the two Abs (C20820 over HECD-1). Upon analyses of extracts from cells treated with shellfish samples, we could detect and quantify YTX in naturally contaminated materials. The slot blot format of our functional assay allows a substantial shortening of its analytical step (about seven hr, as compared to the two working days of the original method), providing YTX measurements that are accurate but show large standard deviations. PMID:17055548

  8. Western Blotting using the Invitrogen NuPage Novex Bis Tris minigels.

    PubMed

    Penna, Aubin; Cahalan, Michael

    2007-01-01

    Western Blotting (or immunoblotting) is a standard laboratory procedure allowing investigators to verify the expression of a protein, determine the relative amount of the protein present in different samples, and analyze the results of co-immunoprecipitation experiments. In this method, a target protein is detected with a specific primary antibody in a given sample of tissue homogenate or extract. Protein separation according to molecular weight is achieved using denaturing SDS-PAGE. After transfer to a membrane, the target protein is probed with a specific primary antibody and detected by chemiluminescence. Since its first description, the western-blotting technique has undergone several improvements, including pre-cast gels and user-friendly equipment. In our laboratory, we have chosen to use the commercially available NuPAGE electrophoresis system from Invitrogen. It is an innovative neutral pH, discontinuous SDS-PAGE, pre-cast mini-gel system. This system presents several advantages over the traditional Laemmli technique including: i) a longer shelf life of the pre-cast gels ranging from 8 months to 1 year; ii) a broad separation range of molecular weights from 1 to 400 kDa depending of the type of gel used; and iii) greater versatility (range of acrylamide percentage, the type of gel, and the ionic composition of the running buffer). The procedure described in this video article utilizes the Bis-Tris discontinuous buffer system with 4-12% Bis-Tris gradient gels and MES running buffer, as an illustration of how to perform a western-blot using the Invitrogen NuPAGE electrophoresis system. In our laboratory, we have obtained good and reproducible results for various biochemical applications using this western-blotting method. PMID:18989435

  9. Differentiation of larva migrans caused by Baylisascaris procyonis and Toxocara species by Western blotting.

    PubMed

    Dangoudoubiyam, Sriveny; Kazacos, Kevin R

    2009-11-01

    Baylisascaris procyonis and Toxocara species are two important causes of larva migrans in humans. Larva migrans caused by Toxocara spp. is well known and is diagnosed serologically by enzyme immunoassay. Over a dozen cases of larva migrans and associated eosinophilic encephalitis caused by B. procyonis have also been reported, and at least a dozen additional cases are known. An enzyme-linked immunosorbent assay (ELISA) using the excretory-secretory (ES) antigen of B. procyonis larvae is currently being used in our laboratory as an aid in the diagnosis of this infection in humans. Clinically affected individuals show very high reactivity (measured as the optical density) on this ELISA; however, a one-way cross-reactivity with Toxocara spp. has been observed. As an approach to differentiate these two infections based on serology, we performed Western blots, wherein the B. procyonis ES antigen was reacted with serum samples from individuals known to be positive for either Toxocara spp. or B. procyonis larva migrans. Western blot results showed that B. procyonis antigens of between 30 and 45 kDa were specifically identified only by the sera from individuals with Baylisascaris larva migrans, thus allowing for differentiation between the two infections. This included human patient serum samples submitted for serologic testing, as well as sera from rabbits experimentally infected with B. procyonis. When used in conjunction with the ELISA, Western blotting could be an efficient tool for diagnosis of this infection in humans. PMID:19741091

  10. Selection of a Clostridium perfringens type D epsilon toxin producer via dot-blot test.

    PubMed

    Gonçalves, Luciana A; Lobato, Zélia I P; Silva, Rodrigo O S; Salvarani, Felipe M; Pires, Prhiscylla S; Assis, Ronnie A; Lobato, Francisco C F

    2009-11-01

    Clostridium perfringens type D produces enterotoxemia, an enteric disease in ruminants, also known as pulpy kidney disease. Caused by epsilon toxin, enterotoxemia is a major exotoxin produced by this microorganism. Epsilon toxin is also the main component of vaccines against this enteric disorder. In this study, a standardized dot-blot was used to choose strains of C. perfringens type D that are producers of epsilon toxin. Clones producing epsilon toxin were chosen by limiting dilution; after three passages, lethal minimum dose titers were determined by soroneutralization test in mice. These clones produced epsilon toxin 240 times more concentrated than the original strain. The presence of the epsilon toxin gene (etx) was verified by polymerase chain reaction. All clones were positive, including those determined to be negative by dot-blot tests, suggesting that mechanisms in addition to the presence of the etx gene can influence toxin production. The dot-blot test was efficient for the selection of toxigenic colonies of C. perfringens type D and demonstrated that homogeneous populations selected from toxigenic cultures produce higher titers of epsilon toxin. PMID:19779698

  11. Glaciomarine sedimentation and bottom current activity on the north-western and northern continental margins of Svalbard during the late Quaternary

    NASA Astrophysics Data System (ADS)

    Chauhan, Teena; Noormets, Riko; Rasmussen, Tine L.

    2016-04-01

    Palaeo-bottom current strength of the West Spitsbergen Current (WSC) and the influence of the Svalbard-Barents Sea Ice Sheet (SBIS) on the depositional environment along the northern Svalbard margins are poorly known. Two gravity cores from the southern Yermak Plateau and the upper slope north of Nordaustlandet, covering marine isotope stage (MIS) 1 to MIS 5, are investigated. Five lithofacies, based on grain size distribution, silt/clay ratio, content and mean of sortable silt (SS), are distinguished to characterise the contourite-dominated sedimentary environments. In addition, depositional environments are described using total organic carbon (TOC), total sulphur (TS) and calcium carbonate (CaCO3) contents of sediments. Facies A, containing coarse SS, suggests strong bottom current activity and good bottom water ventilation conditions as inferred from low TOC content. This facies was deposited during the glacial periods MIS 4, MIS 2 and during the late Holocene. Facies B is dominated by fine SS indicating weak bottom current and poor ventilation (cf. high TOC content of 1.2-1.6%), and correlates with the MIS 4/3 and MIS 2/1 transition periods. With an equal amount of clay and sand, fine SS and high content of TOC, facies C indicates reduced bottom current strength for intervals with sediment supply from proximal sources such as icebergs, sea ice or meltwater discharge. This facies was deposited during the last glacial maximum. Facies D represents mass-flow deposits on the northern Svalbard margin attributed to the SBIS advance at or near the shelf edge. Facies E sediments indicating moderate bottom current strength were deposited during MIS 5 and MIS 3, and during parts of MIS 2. This first late Quaternary proxy record of the WSC flow and sedimentation history from the northern Svalbard margin suggests that the oceanographic conditions and ice sheet processes have exerted first-order control on sediment properties.

  12. Restricted specificity of the autoantibody response in Goodpasture's syndrome demonstrated by two-dimensional western blotting.

    PubMed

    Derry, C J; Dunn, M J; Rees, A J; Pusey, C D

    1991-12-01

    The autoantigen in Goodpasture's syndrome is known to be contained within the non-collagenous (NC1) domain of type IV collagen. We have examined the specificity of autoantibodies to glomerular basement membrane (GBM) using the technique of 2-D electrophoresis followed by Western blotting. Protein stains of 2-D gels of collagenase-digested human GBM revealed extensive charge and size heterogeneity. Major components were of mol. wt 24-30 kD and 43-56 kD, corresponding to monomeric and dimeric subunits of NCl. Western blotting of 2-D gels with IgG from patients with anti-GBM disease demonstrated that the most antigenic components migrated as cationic 28-kD monomers (pI 10) and similarly charged dimers, although other components were recognized less strongly. The mobility of the strongly antigenic polypeptides was different to that of the known alpha 1 and alpha 2 chains of type IV collagen. Autoantibodies from all 20 patients studied showed the same pattern of reactivity, regardless of their clinical features (in particular, the presence or absence of pulmonary haemorrhage) or HLA type. A monoclonal antibody (P1) to human GBM bound in a similar pattern, particularly recognizing the cationic components. 2-D gels of affinity-purified GBM from a P1 column showed enrichment of the 28-kD monomers, which were recognized by human autoantibodies on Western blotting. These results demonstrate that the autoimmune response in Goodpasture's syndrome is of restricted specificity, and support the suggestion that the major autoantigenic determinant is present on the novel alpha 3 chain of type IV collagen. PMID:1747953

  13. Fluorescent detection of Southern blots and PCR-based genetic typing tests

    SciTech Connect

    Mansfield, E.S.; Worley, J.M.; Zimmerman, P.A.

    1994-09-01

    The Southern blot is used to study gene organization, to identify disease-causing genomic rearrangements, or for typing RFLP markers in forensic, paternity, or prenatal diagnostic testing. Fluorescence offers a much greater dynamic range and a more linear response than film used in radioactive or chemiluminescent detection of RFLPs. We therefore investigated using the Fluorimager{trademark} 575 (Molecular Dynamics, Inc.) for analyzing Southern blots. Using a single-locus probe to D2S44 (YNH24) (Promega Corp.), we detect as little as 100 ng (0.05 attomole) genomic DNA. The alkaline phosphatase-labeled probe is detected using AttoPhos (JBL Scientific), and the developed membrane is scanned with the Fluorimager. Biotinylated hybridization probes can also be developed using a streptavidin-alkaline phosphatase conjugate and AttoPhos. The instrument scan parameters can be adjusted to prevent overexposure and accompanying loss of resolution in images of blots, gels, or 96-well microplates. We have used these other sample formats in PCR-based genetic typing assays. We use FluorKit DQS (Molecular Dynamics) to accurately quantify PCR template DNA (1-500 ng) in 96-well microplates scanned using the same instrument. Mutation detection assays run include heteroduplex gels (5% polyacrylamide, 2.7 M urea), short tandem repeat (STR) markers, amplified fragment length polymorphisms (AmpFLP), competitive priming PCR, and allele-specific oligotyping. These assays are run using either 1- or 2-color labeling. We detect unlabeled PCR products, such as the AmpFLP marker D1S80 (Perkin-Elmer) by post-staining gels for 10 minutes with SYBR Green 1 (Molecular Probes) and scanning the wet gel. The Fluorimager scans a 20 x 25 cm sample within three minutes, allowing rapid optimization of fluorescent protocols and high sample throughput.

  14. RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio cholerae and Vibrio mimicus Bacteria▿

    PubMed Central

    Grim, Christopher J.; Zo, Young-Gun; Hasan, Nur A.; Ali, Afsar; Chowdhury, Wasimul B.; Islam, Atiqul; Rashid, Mohammed H.; Alam, Munirul; Morris, J. Glenn; Huq, Anwar; Colwell, Rita R.

    2009-01-01

    A species-specific RNA colony blot hybridization protocol was developed for enumeration of culturable Vibrio cholerae and Vibrio mimicus bacteria in environmental water samples. Bacterial colonies on selective or nonselective plates were lysed by sodium dodecyl sulfate, and the lysates were immobilized on nylon membranes. A fluorescently labeled oligonucleotide probe targeting a phylogenetic signature sequence of 16S rRNA of V. cholerae and V. mimicus was hybridized to rRNA molecules immobilized on the nylon colony lift blots. The protocol produced strong positive signals for all colonies of the 15 diverse V. cholerae-V. mimicus strains tested, indicating 100% sensitivity of the probe for the targeted species. For visible colonies of 10 nontarget species, the specificity of the probe was calculated to be 90% because of a weak positive signal produced by Grimontia (Vibrio) hollisae, a marine bacterium. When both the sensitivity and specificity of the assay were evaluated using lake water samples amended with a bioluminescent V. cholerae strain, no false-negative or false-positive results were found, indicating 100% sensitivity and specificity for culturable bacterial populations in freshwater samples when G. hollisae was not present. When the protocol was applied to laboratory microcosms containing V. cholerae attached to live copepods, copepods were found to carry approximately 10,000 to 50,000 CFU of V. cholerae per copepod. The protocol was also used to analyze pond water samples collected in an area of cholera endemicity in Bangladesh over a 9-month period. Water samples collected from six ponds demonstrated a peak in abundance of total culturable V. cholerae bacteria 1 to 2 months prior to observed increases in pathogenic V. cholerae and in clinical cases recorded by the area health clinic. The method provides a highly specific and sensitive tool for monitoring the dynamics of V. cholerae in the environment. The RNA blot hybridization protocol can also be

  15. Immunological Diagnosis of Human Hydatid Cyst Relapse: Utility of the Enzyme-Linked Immunoelectrotransfer Blot and Discriminant Analysis

    PubMed Central

    Gadea, I.; Ayala, G.; Diago, M. T.; Cuñat, A.; Garcia de Lomas, J.

    2000-01-01

    A discriminant technique was applied to the different serological patterns obtained by enzyme-linked immunoelectrotransfer blotting (EITB) and by conventional immunological tests, in order to differentiate the residual antibody patterns present in healed hydatidosis from the ones present in patients with active hydatidosis. For this purpose, specific antibodies against Echinococcus granulosus were detected by indirect hemagglutination, agglutination of latex particles, basophil degranulation, and EITB for 23 patients with active hydatidosis and 45 patients with surgically cured hydatidosis. Discriminant analysis of the different serological patterns obtained by EITB and conventional serology correctly classified 92.54% of patients (93.3% if the patients are differentiated according to the time elapsed since surgery). This method detected the presence of active hydatidosis in 95.6% of patients for whom abdominal ultrasonography had confirmed the presence of active hydatid cysts. The global specificity was 88.9%. The specificity was 97.1% for patients who had been operated on 3 years ago or more and 63.6% for patients with less time since surgery. PMID:10882649

  16. Blotting Assisted by Heating and Solvent Extraction for DESI-MS Imaging

    NASA Astrophysics Data System (ADS)

    Cabral, Elaine C.; Mirabelli, Mario F.; Perez, Consuelo J.; Ifa, Demian R.

    2013-06-01

    Imprints of potato sprout ( Solanum tuberosum L.), gingko leaves (Gingko biloba L. ) and strawberries (Fragaria x ananassa Duch. ) were successfully imaged by desorption electrospray ionization mass spectrometry (DESI-MS) on TLC plates through blotting assisted by heating and/or solvent extraction. Ion images showing the distribution of significant compounds such as glycoalkaloid toxins in potato sprout, ginkgolic acids and flavonoids in ginkgo leaves, and sugars and anthocyanidin in strawberry were obtained. Practical implications of this work include analysis of a wide range of irregular or soft materials by different imprinting conditions without requiring the addition of matrices or use of specific kinds of surfaces.

  17. Aftershock and induced seismic activity of the 2011 off the Pacific coast of Tohoku Earthquake in the northern part of Tohoku district, NE Japan

    NASA Astrophysics Data System (ADS)

    Kosuga, M.; Watanabe, K.

    2011-12-01

    We investigated the seismic activity around the northern neighbor of the 2011 off the Pacific coast of Tohoku Earthquake (Mw 9.0) with special attention to a potential large aftershock in the area. We obtained a combined data set by adding our manually-picked locations to the catalog locations by the Japan Meteorological Agency. The hypocenter distribution delineates active and inactive bands of seismicity. The band of low seismicity corresponds to a zone of a large seismic slip, indicating that aftershocks occurred in peripheral neighbors of the mainshock asperity. The broad band of active seismicity along the coast corresponds to the zone of a large postseismic slip, suggesting the enhancement of the aftershock activity by the slip. Although the northern neighbor of the mainshock fault is a favored region of increased seismicity, as shown from a Coulomb stress calculation, no significant seismic activity is observed within the potential source area except along the Japan Trench and the SW corner. This implies that the zone of interplate moment release by previous large earthquakes and the subsequent slow slip acted as a barrier to the migration of both the mainshock rupture and aftershock activity. However, an aftershock area in the zone may reflect inhomogeneous moment release by past seismic and aseismic sequences. Induced inland seismicity is quite high in the Akita Prefecture on the Japan Sea side apart more than 100 km from the mainshock fault. There are some active clusters including moderate earthquakes with magnitude greater than 5. They are newly formed clusters after the mainshock, while the seismicity of previously active areas decreased significantly. Focal mechanism solutions of earthquakes in the new clusters show the types of strike-slip with consistently NW-SE trending T-axes. The predominant type of focal mechanisms in the Akita area before the mainshock was E-W compressional reverse faulting. Thus the stress field in the area has changed

  18. Neurofilament dot blot assays: novel means of assessing axon viability in culture.

    PubMed

    Hares, Kelly; Kemp, Kevin; Gray, Elizabeth; Scolding, Neil; Wilkins, Alastair

    2011-06-15

    Axonal structure and integrity are vital to overall neuronal maintenance and action potential propagation. Neurofilaments (NFs) are one of the main cytoskeletal components of axons and phosphorylation of NF subunits regulates speed of NF transport through axons and determines optimal axonal calibre required for signal propagation. Many previous studies of neuroprotective agents have focussed on neuronal viability in models of neurodegenerative disease, without specifically considering axon function as an indicator of neuronal damage. In this study, we have focused on developing novel assays for determining axon viability by measuring levels of neurofilament phosphorylation in cultured cortical neurons. The nitric oxide donor DETANONOate (NO) was used as an inflammatory insult and glial cell line-derived neurotrophic factor (GDNF) and superoxide dismutase (SOD) were tested as potential axonal protective agents. Using 'dot blot' methodologies, we show a decrease in NF phosphorylation in cortical neurons exposed to NO-mediated cell toxicity and an attenuation of NO-mediated changes in NF phosphorylation associated with GDNF and SOD treatment. These results correlated well with immunocytochemical counts. We propose therefore that the dot blot assay is a novel method for assessing axonal integrity in vitro and may play a useful role in the future for testing the effects of agents on axonal viability, providing a reliable and reproducible screening method for potential therapeutics for neurodegenerative diseases. PMID:21459112

  19. Validation of Endothelin B Receptor Antibodies Reveals Two Distinct Receptor-related Bands on Western Blot

    PubMed Central

    Barr, Travis P.; Kornberg, Daniel; Montmayeur, Jean-Pierre; Long, Melinda; Reichheld, Stephen; Strichartz, Gary R.

    2014-01-01

    Antibodies are important tools for the study of protein expression, but are often used without full validation. In this study, we use Western blots to characterize antibodies targeted to the N- (NT) or C-termini (CT) and the second (IL2) or third intracellular (IL3) loops of the endothelin B receptor (ETB). The IL2-targeted antibody accurately detected endogenous ETB expression in rat brain and cultured rat astrocytes by labeling a 50kD band, the expected weight of full-length ETB. However, this antibody failed to detect transfected ETB in HEK293 cultures. In contrast, the NT-targeted antibody accurately detected endogenous ETB in rat astrocyte cultures and transfected ETB in HEK293 cultures by labeling a 37 kD band, but failed to detect endogenous ETB in rat brain. Bands detected by the CT-targeted or IL3-targeted antibodies were found to be unrelated to ETB. Our findings show that functional ETB receptors can be detected at 50 kD or 37 kD on Western blot, with drastic differences in antibody affinity for these bands. The 37 kD band likely reflects ETB receptor processing, which appears to be dependent on cell type and/or culture condition. PMID:25232999

  20. Evaluating cytoplasmic and nuclear levels of inflammatory cytokines in cancer cells by western blotting.

    PubMed

    Gatla, Himavanth R; Singha, Bipradeb; Persaud, Valerie; Vancurova, Ivana

    2014-01-01

    Increased expression and cellular release of inflammatory cytokines, interleukin-8 (IL-8; CXCL8), and high mobility group box-1 (HMGB1) are associated with increased cell proliferation, angiogenesis, and metastasis during cancer progression. In prostate and ovarian cancer cells, increased levels of IL-8 and HMGB1 correlate with poor prognosis. We have recently shown that proteasome inhibition by bortezomib (BZ) specifically increases IL-8 release from metastatic prostate and ovarian cancer cells. In this chapter, we describe a protocol to analyze the cytoplasmic and nuclear levels of IL-8 and HMGB1 in prostate and ovarian cancer cells by western blotting. IL-8 is localized in the cytoplasm in both cell types, and its protein levels are significantly increased by BZ. In contrast, HMGB1 is localized in the nucleus, and BZ increases its nuclear levels only in ovarian cancer cells. The protocol includes isolation of cytoplasmic and nuclear extracts, followed by SDS electrophoresis and western blotting, and can be easily modified to analyze the cytoplasmic and nuclear cytokine levels in other cell types. PMID:24908314

  1. Visualization of heparin-binding proteins by ligand blotting with /sup 125/I-heparin

    SciTech Connect

    Cardin, A.D.; Witt, K.R.; Jackson, R.L.

    1984-03-01

    A ligand-blotting procedure which allows detection of heparin-binding proteins is described. Crude commercial heparin was fractionated by chromatography on a column of human plasma low-density lipoproteins immobilized to Sepharose CL-4B. Chromatography yielded an unbound and a bound fraction of heparin, designated URH and HRH, respectively. The HRH fraction was reacted with the N-hydroxysuccinimidyl ester of 3-(p-hydroxyphenyl)propionic acid and then labeled with /sup 125/I. Proteins were separated by 3-20% pore-gradient gel electrophoresis, transferred to nitrocellulose, and then assayed for their ability to bind /sup 125/I-labeled HRH. Human plasma apolipoproteins B-100, B-48, and E of chylomicrons, very low-density lipoproteins, and low-density lipoproteins bound the /sup 125/I-labeled HRH; the radiolabeled haparin did not bind to serum albumin, ferritin, catalase, and lactate dehydrogenase. The ligand-blotting procedure should facilitate the purification of heparin-binding domains from these proteins and, moreover may be applicable to the investigation of heparin-protein interactions in general. 15 references.

  2. Analysis of sperm antigens by sodium dodecyl sulfate gel/protein blot radioimmunobinding method

    SciTech Connect

    Lee, C.Y.G.; Huang, Y.S.; Hu, P.C.; Gomel, V.; Menge, A.C.

    1982-06-01

    A radioimmunobinding method based on the blotting of renatured proteins from sodium dodecyl sulfate gels on to nitrocellulose filter papers was developed to analyze the sperm antigens that elicit serum anti-sperm antibodies. In rabbits, serum anti-sperm antibodies were raised by immunization with homologous epididymal spermatozoa mixed with complete Freund's adjuvant. The raised antisera from either male or female rabbits were shown to react with three major sperm protein bands on sodium dodecyl sulfate gels with the corresponding molecular weights of about 70,000 +/- 5000, 14,000, and 13,000, respectively. In humans, the monoclonal antibodies against human sperm were raised by a hybridoma technique. Out of six independent hybrid cell lines that were generated, three of them were shown to secrete immunoglobulins that react with the same two protein bands on sodium dodecyl sulfate gels, which have the approximate molecular weight of 10,000. The same procedure was also used to analyze human serum samples that were shown to contain anti-sperm antibodies by the known techniques. Unique sperm antigens that elicit anti-sperm antibodies in humans were identified and correlated. The results of this study suggest that sodium dodecyl sulfate gel/protein blot radioimmunobinding method may be a sensitive and useful tool for the study of sperm antigens that elicit autoimmune responses and their association with human infertility.

  3. Western thymomas lack Epstein-Barr virus by Southern blotting analysis and by polymerase chain reaction.

    PubMed Central

    Inghirami, G.; Chilosi, M.; Knowles, D. M.

    1990-01-01

    The authors investigated 16 western thymomas, 9 from the United States and 7 from Europe, for the presence of Epstein-Barr virus (EBV) DNA sequences by both Southern blot hybridization analysis and polymerase chain reaction using EBV-specific DNA probes that detect the long internal repeat and terminal repeat regions and the EBNA-1 gene. None of the 16 thymomas contained evidence of the EBV genome, even though we could detect EBV by Southern blotting when EBV DNA represents less than or equal to 1% of the total DNA and by polymerase chain reaction when a single EBV-positive cell is present among 10(5) EBV-negative cells. These results fail to demonstrate EBV genome in western thymomas and stand in contrast to those of McGuire et al (Am J Pathol 1988, 131:385) who previously reported that the EBV genome is present in thymomas occurring in southern Chinese patients. Therefore EBV does not appear to be implicated in the pathogenesis of all thymomas. The presence of EBV in eastern thymomas, regions where EBV is endemic may be due to epidemiologic factors and/or genetic predispositions. Images Figure 1 Figure 2 Figure 3 Figure 4 PMID:2162629

  4. Long-term monthly statistics of mid-latitudinal NmF2 in the northern geographic hemisphere during geomagnetically quiet and steadily low solar activity conditions

    NASA Astrophysics Data System (ADS)

    Pavlov, A. V.; Pavlova, N. M.

    2016-05-01

    Long-term mid-latitude hourly values of NmF2 measured in 1957-2015 by 10 ionosondes in the Northern geographic hemisphere were processed to select periods of geomagnetically quiet and low solar activity conditions to calculate several descriptive statistics of the noon NmF2 for each month, including the mathematical expectation, most probable value, arithmetic average, and arithmetic average median. The month-to-month variability of these descriptors allowed us to identify months of a year when they reach their extremes (maxima, minima). The calculated month-to-month variations of the NmF2 statistical parameters made it possible to study the winter anomaly and spring-autumn asymmetry in these statistical parameters.

  5. Increasing physical activity, but persisting social gaps among middle-aged people: trends in Northern Sweden from 1990 to 2007

    PubMed Central

    Ng, Nawi; Söderman, Kerstin; Norberg, Margareta; Öhman, Ann

    2011-01-01

    Background Physical activity is identified as one important protective factor for chronic diseases. Physical activity surveillance is important in assessing healthy population behaviour over time. Many countries lack population trends on physical activity. Objective To present trends in physical activity levels in Västerbotten County, Sweden and to evaluate physical activity among women and men with various educational levels. Methods opulation-based cross-sectional and panel data from the Västerbotten Intervention Programme (VIP) during 1990–2007 were used. All individuals in Västerbotten County who turned 40, 50, or 60 years old were invited to their local primary health care for a health screening. Physical activity during commuting, recreational activities, physical exercise, and socio-demographic data were collected using a self-administered questionnaire. Respondents were categorised as sedentary, moderate physically active, or physically active. Results The prevalences of physically active behaviours increased from 16 to 24.2% among men and from 12.6 to 30.4% among women. Increases are observed in all educational groups, but gaps between educational groups widened recently. The level of sedentary behaviour was stable over the time period studied. The 10-year follow-up data show that the prevalences of physically active behaviours increased from 15.8 to 21.4% among men and 12.7 to 23.3% among women. However, 10.2% of men and 3.8% of women remained sedentary. Conclusion Despite the promising evidence of increasing physical activity levels among the population in Västerbotten County, challenges remain for how to reduce the stable levels of sedentary behaviours in some subgroups. Persisting social gaps in physical activity levels should be addressed further. An exploration of people's views on engaging in physical activity and barriers to doing so will allow better formulation of targeted interventions within this population. PMID:21799669

  6. Maximal enzyme activities, and myoglobin and glutathione concentrations in heart, liver and skeletal muscle of the Northern Short-tailed shrew (Blarina brevicauda; Insectivora: Soricidae).

    PubMed

    Stewart, J M; Woods, A K; Blakely, J A

    2005-07-01

    We measured the enzymes of glycolysis, Krebs Cycle, beta-oxidation and electron transport in the heart, liver and skeletal muscle of the Northern Short-tailed Shrew, Blarina brevicauda. Additionally, we measured the amount of myoglobin in skeletal and heart muscle as well as the concentration of glutathione in heart. The picture that emerges is of an aerobically well-endowed animal with constrained anaerobic capacity as indicated by small activities of glycolytic enzymes and creatine kinase. Lipid metabolism and amino acid transamination, as well as gluconeogenesis, are predominant in processing carbon resources and probably reflect the large contribution lipid and protein make to the diet of this carnivore. The citrate synthase activity is the largest of any reported value for vertebrate heart (250 U/g). The additional, very active cytochrome c oxidase activity (220 U/g) and large myoglobin concentrations (8 mg/g) in heart are clearly the underpinnings of the rapid metabolic rates reported for small insectivores. The potential for generation of reactive oxygen species must be great since the total glutathione concentration (165 mumol/g) is 300-fold greater in shrew hearts than in hearts of rats. PMID:15914053

  7. Comparative analysis of human papillomavirus detection by dot blot hybridisation and non-isotopic in situ hybridisation.

    PubMed Central

    Troncone, G; Anderson, S M; Herrington, C S; de Angelis, M L; Noell, H; Chimera, J A; O'D McGee, J

    1992-01-01

    AIMS: To determine the relative diagnostic performance of non-isotopic in situ hybridisation (NISH) and a dot-blot assay for detecting human papillomavirus (HPV) on exfoliated cervical cells; and to correlate the results with cytopathological assessment. METHODS: Cervical smears and cytological samples were obtained from 122 patients during the same clinical examination and the presence of HPV sequences determined by NISH and dot-blot analysis, respectively. RESULTS: Dot-blot analysis gave an autoradiographic signal in 15 of 121 (12.4%) cases, while NISH detected viral genomes in 38 of 114 (33.3%) cases. Even in the presence of koilocytosis, where vegetative replication of the virus occurs, NISH was positive in over twice as many cases as dot-blot analysis (NISH 90%, dot-blot 40%), while in smears within normal cytological limits, where the viral copy number is likely to be considerably lower, the differences were more striking (NISH 31%, dot-blot 5%). CONCLUSIONS: These data show that NISH on cytological smears is more sensitive than a standardised dot-blot hybridisation assay for detecting HPV infection in cytological material and is therefore a more appropriate screening tool. Images PMID:1331197

  8. Western Blot Detection of Human Anti-Chikungunya Virus Antibody with Recombinant Envelope 2 Protein.

    PubMed

    Yang, Zhaoshou; Lee, Jihoo; Ahn, Hye-Jin; Chong, Chom-Kyu; Dias, Ronaldo F; Nam, Ho-Woo

    2016-04-01

    Chikungunya virus (CHIKV), a tropical pathogen, has re-emerged and has massive outbreaks abruptly all over the world. Containing many dominant epitopes, the envelope E2 protein of CHIKV has been explored for the vaccination or diagnosis. In the present study, the antigenicity of a recombinant expressed intrinsically disorder domain (IUD) of E2 was tested for the detection of the antibody against CHIKV through western blot method. The gene of the IUD of E2 was inserted into 2 different vectors and expressed as recombinant GST-E2 and recombinant MBP-E2 fusion protein, respectively. Two kinds of fusion proteins were tested with 30 CHIKV patient sera and 30 normal sera, respectively. Both proteins were detected by 25 patients sera (83.3%) and 1 normal serum (3.3%). This test showed a relatively high sensitivity and very high specificity of the recombinant E2 proteins to be used as diagnostic antigens against CHIKV infection. PMID:27180586

  9. Western Blot Detection of Human Anti-Chikungunya Virus Antibody with Recombinant Envelope 2 Protein

    PubMed Central

    Yang, Zhaoshou; Lee, Jihoo; Ahn, Hye-Jin; Chong, Chom-Kyu; Dias, Ronaldo F.; Nam, Ho-Woo

    2016-01-01

    Chikungunya virus (CHIKV), a tropical pathogen, has re-emerged and has massive outbreaks abruptly all over the world. Containing many dominant epitopes, the envelope E2 protein of CHIKV has been explored for the vaccination or diagnosis. In the present study, the antigenicity of a recombinant expressed intrinsically disorder domain (IUD) of E2 was tested for the detection of the antibody against CHIKV through western blot method. The gene of the IUD of E2 was inserted into 2 different vectors and expressed as recombinant GST-E2 and recombinant MBP-E2 fusion protein, respectively. Two kinds of fusion proteins were tested with 30 CHIKV patient sera and 30 normal sera, respectively. Both proteins were detected by 25 patients sera (83.3%) and 1 normal serum (3.3%). This test showed a relatively high sensitivity and very high specificity of the recombinant E2 proteins to be used as diagnostic antigens against CHIKV infection. PMID:27180586

  10. Simultaneous Detection and Identification of Candida, Aspergillus, and Cryptococcus Species by Reverse Line Blot Hybridization

    PubMed Central

    Playford, E. Geoffrey; Kong, Fanrong; Sun, Ying; Wang, Hui; Halliday, Catriona; Sorrell, Tania C.

    2006-01-01

    We report on a reverse line blot (RLB) assay, utilizing fungal species-specific oligonucleotide probes to hybridize with internal transcribed spacer 2 region sequences amplified using a nested panfungal PCR. Reference and clinical strains of 16 Candida species (116 strains), Cryptococcus neoformans (five strains of Cryptococcus neoformans var. neoformans, five strains of Cryptococcus neoformans var. grubii, and six strains of Cryptococcus gatti), and five Aspergillus species (68 strains) were all correctly identified by the RLB assay. Additional fungal species (16 species and 26 strains) not represented on the assay did not exhibit cross-hybridization with the oligonucleotide probes. In simulated clinical specimens, the sensitivity of the assay for Candida spp. and Aspergillus spp. was 100.5 cells/ml and 102 conidia/ml, respectively. This assay allows sensitive and specific simultaneous detection and identification of a broad range of fungal pathogens. PMID:16517870

  11. 2-D Western blotting for evaluation of antibodies developed for detection of host cell protein.

    PubMed

    Berkelman, Tom; Harbers, Adriana; Bandhakavi, Sricharan

    2015-01-01

    Recombinant proteins generated for therapeutic use must be substantially free of residual host cell protein (HCP). The presence of host cell protein (HCP) is usually assayed by ELISA using a polyclonal antibody mixture raised against a population of proteins derived from the host cell background. This antibody should recognize as high a proportion as possible of the potential HCPs in a given sample. A recommended method for evaluating the assay involves two-dimensional electrophoretic separation followed by Western blotting.We present here a method using commercial anti-HCP antibody and samples derived from Chinese Hamster Ovary (CHO) cells. The 2-D electrophoresis procedure gives highly reproducible spot patterns and entire procedure can be completed in less than 2 days. Software analysis enables the straightforward generation of percent coverage values for the antibody when used to probe HCP-containing samples. PMID:25820736

  12. Northern Parkway PTA Makes Health a Habit

    ERIC Educational Resources Information Center

    Ferdinand, Marilyn

    2011-01-01

    Health and fitness have been on the agenda of Northern Parkway Elementary School for quite some time, thanks to the concerted efforts of its involved and active PTA officers and members. For the past five years, the Northern Parkway PTA has held a popular and well-attended Family Fun and Fitness Night and has complemented the activities and…

  13. Comparative evaluation of western blotting in hepatic and pulmonary cystic echinococcosis.

    PubMed

    Akisu, C; Delibas, S B; Bicmen, C; Ozkoc, S; Aksoy, U; Turgay, N

    2006-12-01

    Many serological tests are widely used in the diagnosis of cystic echinococcosis (CE), caused by the larval stages of Echinococcus granulosus. The present study was carried for differentiation between hepatic and pulmonary cystic echinococcosis by Western Blotting (WB). A total of 121 sera from patients with hepatic CE (37), pulmonary CE (31) and controls (53; consisting of six healthy, seven Hymenolepis nana infection, 20 hepatic and 20 pulmonary diseases other than CE) were examined. In all of the CE patients, E. gronulosus infection was confirmed by surgical intervention. Sera were previously tested using IHA and ELISA to detect the E. gronulosus specific antibodies. Sera from hepatic cases of CE reacted with 16 polypeptides of 6-116 kDa and sera from pulmonary cases of CE reacted with 14 polypeptides of 4-130 kDa by Western Blotting. The WB test enabled the detection of antibodies in the hepatic CE samples for proteins of 24, 32 34, 44-46 and 52-54 kDa in molecular weight in 78.4%, 75.7%, 78.4% and 89.2% of the patients, respectively. In the pulmonary CE samples sera WB test enabled the detection of antibodies 24, 44-46, 100, 110, 116 and 120 124 kDa in molecular weight in 81.3%, 75.0%, 87.5%, 71.9%, 84.4% and 65.6% of the patients, respectively. We indicated that the antigenic components of high molecular weight can be good candidates for differentiation of hepatic CE from pulmonary CE. PMID:17285854

  14. Magnetostratigraphy of the Suerkuli Basin indicates Pliocene (3.2 Ma) activity of the middle Altyn Tagh Fault, northern Tibetan Plateau

    NASA Astrophysics Data System (ADS)

    Chang, Hong; Ao, Hong; An, Zhisheng; Fang, Xiaomin; Song, Yougui; Qiang, Xiaoke

    2012-01-01

    The left-lateral strike-slip Altyn Tagh Fault (ATF) forming the northern boundary of the Tibetan Plateau accommodates parts of the overall convergence between the colliding Indian and Eurasian plates. Precise dating of the ATF activity is essential for understanding possible mechanisms of Tibetan Plateau deformation and uplift. Here we report a magnetostratigraphic study of the Suerkuli Basin deposits recording depositional changes during the ATF activity. Field investigations reveal a remarkable and widespread change in depositional environment in the Suerkuli Basin, i.e. a transformation from low-energy lacustrine deposits (grayish-green mud-siltstone and brown mud-siltstone) into high-energy alluviul fan deposits (poorly sorted gray pebble and cobble conglomerates). Detailed magnetostratigraphy of the 390-m-thick Daban section, at the southeastern margin of the Suerkuli Basin (38°43.09'N, 90°58.84'E), shows that this change in depositional facies occurred at ˜3.2 Ma, accompanied by a remarkable increase in sediment accumulation rate. We attribute this depositional change to the Piocene tectonic activity of the middle ATF although the contribution of the Pliocene global climate deterioration cannot be excluded.

  15. Activation of systemic, but not local, renin-angiotensin system is associated with upregulation of TNF-α during prolonged fasting in northern elephant seal pups.

    PubMed

    Suzuki, Miwa; Vázquez-Medina, José Pablo; Viscarra, Jose A; Soñanez-Organis, José G; Crocker, Daniel E; Ortiz, Rudy M

    2013-09-01

    Northern elephant seal pups naturally endure a 2-3 month post-weaning fast that is associated with activation of systemic renin-angiotensin system (RAS), a decrease in plasma adiponectin (Acrp30), and insulin resistance (IR)-like conditions. Angiotensin II (Ang II) and tumor necrosis factor-alpha (TNF-α) are potential causal factors of IR, while Acrp30 may improve insulin signaling. However, the effects of fasting-induced activation of RAS on IR-like conditions in seals are not well described. To assess the effects of prolonged food deprivation on systemic and local RAS, and their potential contribution to TNF-α as they relate to an IR condition, the mRNA expressions of adipose and muscle RAS components and immuno-relevant molecules were measured along with plasma RAS components. Mean plasma renin activity and Ang II concentrations increased by 89 and 1658%, respectively, while plasma angiotensinogen (AGT) decreased by 49% over the fast, indicative of systemic RAS activation. Prolonged fasting was associated with decreases in adipose and muscle AGT mRNA expressions of 69 and 68%, respectively, corresponding with decreases in tissue protein content, suggesting suppression of local AGT production. Muscle TNF-α mRNA and protein increased by 239 and 314%, whereas those of adipose Acrp30 decreased by 32 and 98%, respectively. Collectively, this study suggests that prolonged fasting activates a systemic RAS, which contributes to an increase in muscle TNF-α and suppression of adipose Acrp30. This targeted and tissue-specific regulation of TNF-α and Acrp30 is likely coordinated to synergistically contribute to the development of an IR-like condition, independent of local RAS activity. These data enhance our understanding of the adaptive mechanisms evolved by elephant seals to tolerate potentially detrimental conditions. PMID:23685967

  16. Culturable bacterial flora associated with the dinoflagellate green Noctiluca miliaris during active and declining bloom phases in the Northern Arabian Sea.

    PubMed

    Basu, Subhajit; Deobagkar, Deepti D; Matondkar, S G Prabhu; Furtado, Irene

    2013-05-01

    A massive algal bloom of the dinoflagellate Noctiluca miliaris (green) was located in the Northern Arabian Sea by IRS-P4-2 (OCM-II) for microbiological studies, during two consecutive cruises of February-March 2009. Culturable bacterial load during bloom were ≈ 2-3-fold higher in comparison to non-bloom waters and ranged from 3.20 × 10(5) to 6.84 × 10(5) cfu ml(-1). An analysis of the dominant heterotrophs associated with Noctiluca bloom resulted in phylogenetic and a detailed metabolic characterization of 70 bacterial isolates from an overlapping active and declining bloom phase location near north-central Arabian Sea. The active phase flora was dominated by Gram-positive forms (70.59 %), a majority of which belonged to Bacillus (35.29 %) of Firmicutes. As the bloom declined, Gram-negative forms (61.11 %) emerged dominant, and these belonged to a diverse γ-proteobacterial population consisting of Shewanella (16.67 %) and equal fractions of a Cobetia-Pseudomonas-Psychrobacter-Halomonas population (36.11 %). A Unifrac-based principal coordinate analysis of partial 16S rDNA sequences showed significant differences among the active and declining phase flora and also with reported endocytic flora of Noctiluca (red). A nonparametric multidimensional scaling (NMDS) of antibiogram helped differentiation among closely related strains. The organic matter synthesized by N. miliaris appears to be quickly utilized and remineralized as seen from the high efficiency of isolates to metabolize various complex and simple C/N substrates such as carbohydrates, proteins/amino acids, lipids, sulfide production from organic matter, and solubilize phosphates. The ability of a large fraction of these strains (50-41.67 %) to further aerobically denitrify indicates their potential for nitrogen removal from these high-organic microniches of the Noctiluca bloom in the Arabian Sea, also known for high denitrification activity. The results indicate that culturable euphotic bacterial

  17. Is the Temperature Sensitivity of Decomposition Modified by the Number of Active Microorganisms in Northern Frozen Soils?

    NASA Astrophysics Data System (ADS)

    Waldrop, M. P.; Wickland, K.; Rychel, C.; Harden, J. W.; Jansson, J. R.; Deangelis, K. M.

    2008-12-01

    Frozen soils in the arctic and subarctic regions cover approximately 22% of the earth's land surface and store 25-35% of global soil carbon, making the thermally-protected C contained within it particularly important to the global C cycle. In boreal regions, the carbon contained within active layer and permafrost soil horizons is usually not mineral-protected and incubation studies have revealed that microorganisms can easily metabolize this material as soils thaw. The available evidence shows that the total number of microorganisms (dormant + active) is high in frozen soils, even permafrost, suggesting the majority of these organisms are dormant. Our work also suggests that frozen soils that are thawed and subsequently cooled (a thermal pulse) unexpectedly maintain high rates of respiration. We attempt to explain this result by examining the extent to which soil microorganisms become active following a thermal pulse. The change from dormancy to active microbial communities can be a threshold response to increasing temperatures. We asked, if more microorganisms become active at 20°C compared to 5°C, does this then modify the temperature sensitivity of decomposition following the temperature pulse? To test this theory, we conducted an incubation experiment with permafrost and active layer soils from Fairbanks, Hess Creek, and Coldfoot AK. These sites were chosen due to the large differences in active layer and permafrost C among the sites, which varies from organic rich fibric material to organic poor frozen loess. We conducted a temperature pulse experiment in which we incubated soils at 5°C for 30 days, then 20°C for one day, followed by 30 days at 5°C again. Pulsed soils were compared to control soils that were incubated isothermally at 5°C. Results suggest that rates of respiration at 5° C are higher in pulsed soils compared to the controls, and that this effect is stronger in permafrost compared to active layer soils. To test whether higher rates of

  18. Prolonged fasting activates hypoxia inducible factors-1α, -2α and -3α in a tissue-specific manner in northern elephant seal pups.

    PubMed

    Soñanez-Organis, José G; Vázquez-Medina, José P; Crocker, Daniel E; Ortiz, Rudy M

    2013-09-10

    Hypoxia inducible factors (HIFs) are important regulators of energy homeostasis and cellular adaptation to low oxygen conditions. Northern elephant seals are naturally adapted to prolonged periods (1-2 months) of food deprivation (fasting) which result in metabolic changes that may activate HIF-1. However, the effects of prolonged fasting on HIFs are not well defined. We obtained the full-length cDNAs of HIF-1α and HIF-2α, and partial cDNA of HIF-3α in northern elephant seal pups. We also measured mRNA and nuclear protein content of HIF-1α, -2α, -3α in muscle and adipose during prolonged fasting (1, 3, 5 & 7 weeks), along with mRNA expression of HIF-mediated genes, LDH and VEGF. HIF-1α, -2α and -3α are 2595, 2852 and 1842 bp and encode proteins of 823, 864 and 586 amino acid residues with conserved domains needed for their function (bHLH and PAS) and regulation (ODD and TAD). HIF-1α and -2α mRNA expression increased 3- to 5-fold after 7 weeks of fasting in adipose and muscle, whereas HIF-3α increased 5-fold after 7 weeks of fasting in adipose. HIF-2α protein expression was detected in nuclear fractions from adipose and muscle, increasing approximately 2-fold, respectively with fasting. Expression of VEGF increased 3-fold after 7 weeks in adipose and muscle, whereas LDH mRNA expression increased 12-fold after 7 weeks in adipose. While the 3 HIFα genes are expressed in muscle and adipose, only HIF-2α protein was detectable in the nucleus suggesting that HIF-2α may contribute more significantly in the up-regulation of genes involved in the metabolic adaptation during fasting in the elephant seal. PMID:23707926

  19. Prolonged fasting activates hypoxia inducible factor -1α, -2α and -3α in a tissue-specific manner in northern elephant seal pups

    PubMed Central

    Soñanez-Organis, José G.; Vázquez-Medina, José P.; Crocker, Daniel E.; Ortiz, Rudy M.

    2013-01-01

    Hypoxia inducible factors (HIFs) are important regulators of energy homeostasis and cellular adaptation to low oxygen conditions. Northern elephant seals are naturally adapted to prolonged periods (1–2 months) of food deprivation (fasting) that result in metabolic changes that may activate HIF-1. However, the effects of prolonged fasting on HIFs are not well defined. We obtained the full-length cDNAs of HIF-1α and HIF-2α, and partial cDNA of HIF-3α in northern elephant seal pups. We also measured mRNA and nuclear protein content of HIF-1α, -2α, -3α in muscle and adipose during prolonged fasting (1, 3, 5 & 7 wks), along with mRNA expression of HIF-mediated genes, LDH and VEGF. HIF-1α, -2α and -3α are 2595, 2852 and 1842 bp and encode proteins of 823, 864 and 586 amino acid residues with conserved domains needed for their function (bHLH and PAS) and regulation (ODD and TAD). HIF-1α and -2α mRNA expression increased 3- to 5-fold after 7 weeks of fasting in adipose and muscle, whereas HIF-3α increased 5-fold after 7 weeks of fasting in adipose. HIF-2α protein expression was detected in nuclear fractions from adipose and muscle, increasing approximately 2-fold, respectively with fasting. Expression of VEGF increased 3-fold after 7 weeks in adipose and muscle, whereas LDH mRNA expression increased 12-fold after 7 weeks in adipose. While the 3 HIFα genes are expressed in muscle and adipose, only HIF-2α protein was detectable in the nucleus suggesting that HIF-2α may contribute more significantly in the up-regulation of genes involved in the metabolic adaption during fasting in the elephant seal. PMID:23707926

  20. Detection and typing of human papillomavirus using the Vira Type "in situ" kit: comparison with a conventional dot blot technique.

    PubMed Central

    Faulkner-Jones, B E; Bellomarino, V M; Borg, A J; Orzeszko, K; Garland, S M

    1990-01-01

    A new commercial kit (Vira Type "in situ", Life Technologies, Inc., Molecular Diagnostics Division, Guithersburg, Maryland, USA) for the detection of human papillomavirus (HPV) types 6, 11, 16, 18, 31, 33 and 35 in routinely processed human anogenital tissue was compared with a conventional dot blot assay for HPV 6, 11, 16 and 18. Both systems use double-stranded genomic DNA probes for the detection of type specific HPV DNA. The probes used on the dot blots were labelled with 32P and visualised autoradiographically. The Vira Type probes were labelled with biotin and visualised using a streptavidin-alkaline phosphatase conjugate with NBT-BCIP substrate. Biopsy specimens from the cervix, vagina, and vulva of 46 women were processed by both methods and compared. The histological diagnoses ranged from benign changes, to dysplasia, and invasive carcinoma. Overall, 50% of biopsy specimens were positive for HPV DNA by dot blot hybridisation; only 39% were positive by Vira Type in situ hybridisation. Three of the specimens positive by the Vira Type "in situ" kit showed no cross hybridisation and were the same HPV type as the dot blot. A further 13 showed hybridisation, but the showed cross hybridisation, but the to the dot blot results. One biopsy specimen was positive for different HPV types by the two tests and one was positive by Vira Type and negative by dot blot. Six biopsy specimens were negative by Vira Type but positive by dot blot. It is concluded that the Vira Type "in situ" kit has a similar specificity but lower sensitivity than the dot blot hybridisation method for the detection of HPV DNA. Images PMID:2175755

  1. Elevated Seismic Activity Beneath the Slumbering Morne aux Diables Volcano, Northern Dominica and the Monitoring Role of the Seismic Research Centre

    NASA Astrophysics Data System (ADS)

    Watts, R. B.; Robertson, R. E.; Abraham, W.; Cole, P.; de Roche, T.; Edwards, S.; Higgins, M.; Johnson, M.; Joseph, E. P.; Latchman, J.; Lynch, L.; Nath, N.; Ramsingh, C.; Stewart, R. C.

    2012-12-01

    Since June 2009, periods of elevated seismic activity have been experienced around the flanks of Morne Aux Diables Volcano in northern Dominica. This long-dormant volcano is a complex of 7 andesitic lava domes with a central depression where a cold soufrière is evident. Prior to this activity, seismicity was very quiet except for a short period in 2000 and an intense short-lived swarm in April 2003. The most recent earthquake activity has been regularly felt by residents in villages on all flanks of the complex. In Dec 09/Jan10, scientists from the Seismic Research Centre (SRC), based in Trinidad & Tobago, in collaboration with staff of the Office of Disaster Management (ODM) and Dominica Public Seismic Network (DPSN) improved the monitoring capacity around this volcano from 1 to 7 seismic stations. Earthquakes are determined to be volcano-tectonic in nature and located at shallow depths (<4 km) beneath the central depression. Additionally, in Jan/Feb 10 geothermal sampling was undertaken and 2 permanent GPS sites were deployed. Public information leaflets prepared by SRC scientists using a "Question & Answer" format have been distributed to concerned citizens whilst many public meetings were carried out by ODM staff. Field investigations indicate that the previous Late Pleistocene activity of Morne Aux Diables switched from Pelèan dome growth and gravitational collapse to more explosive pumice-falls and associated ignimbrites, both styles forming extensive pyroclastic fans around the central complex. The town of Portsmouth is located on one of these fans ~5 km southwest of the central depression. Sporadic, short bursts of seismic activity continue at the time of writing.

  2. V3 Stain-free Workflow for a Practical, Convenient, and Reliable Total Protein Loading Control in Western Blotting

    PubMed Central

    Posch, Anton; Kohn, Jonathan; Oh, Kenneth; Hammond, Matt; Liu, Ning

    2013-01-01

    The western blot is a very useful and widely adopted lab technique, but its execution is challenging. The workflow is often characterized as a "black box" because an experimentalist does not know if it has been performed successfully until the last of several steps. Moreover, the quality of western blot data is sometimes challenged due to a lack of effective quality control tools in place throughout the western blotting process. Here we describe the V3 western workflow, which applies stain-free technology to address the major concerns associated with the traditional western blot protocol. This workflow allows researchers: 1) to run a gel in about 20-30 min; 2) to visualize sample separation quality within 5 min after the gel run; 3) to transfer proteins in 3-10 min; 4) to verify transfer efficiency quantitatively; and most importantly 5) to validate changes in the level of the protein of interest using total protein loading control. This novel approach eliminates the need of stripping and reprobing the blot for housekeeping proteins such as β-actin, β-tubulin, GAPDH, etc. The V3 stain-free workflow makes the western blot process faster, transparent, more quantitative and reliable. PMID:24429481

  3. Examining Activity-Based Learning (ABL) Practices in Public Basic Schools in the Northern Region of Ghana

    ERIC Educational Resources Information Center

    Nudzor, Hope P.; Dare, Albert; Oduro, George K. T.; Bosu, Rosemary; Addy, Nii

    2015-01-01

    Background: Ghana has been the testing ground for many teaching and learning initiatives over the past 15-20 years. These initiatives, largely funded by donors, have sought to improve learning by introducing and reinforcing valuable teaching skills, materials and approaches, most of them child-friendly, learner-centred and involving activity-based…

  4. Antimicrobial activity and agricultural properties of bitter melon (Momordica charantia L.) grown in northern parts of Turkey: a case study for adaptation.

    PubMed

    Yaldız, Gülsüm; Sekeroglu, Nazım; Kulak, Muhittin; Demirkol, Gürkan

    2015-01-01

    This study was designed to determine the adaptation capability of bitter melon (Momordica charantia L.), which is widely grown in tropical and subtropical climates, in northern parts of Turkey. In this study, plant height, number of fruits, fruit length, fruit width, number of seeds and fruit weight of bitter melon grown in field conditions were determined. The antimicrobial effect of the ethanol extract of fruit and seeds against Pseudomonas aeruginosa, Escherichia coli, Staphylococcus aureus, Salmonella typhi, Aspergillus niger and Candida albicans microorganisms was tested in vitro by the disc diffusion method. In conclusion, plant height (260 cm), number of fruits (16 per  plant), number of seeds (30.2  per fruit), fruit width (3.8 cm), fruit length (10.6 cm) and fruit weight (117.28 g fruit(- 1)) were determined; fruits were found to have antimicrobial activity against A. niger; oil and seeds were found to have antimicrobial activity against A. niger and E. coli. PMID:25141891

  5. Gender Differences in Health Related Quality of Life among People Living with HIV on Highly Active Antiretroviral Therapy in Mekelle Town, Northern Ethiopia

    PubMed Central

    Tesfay, Amanuel; Gebremariam, Abebe; Abrha, Hailay

    2015-01-01

    Background. Health related quality of life (HRQOL) is an important outcome measure for highly active antiretroviral treatment program. In Ethiopia, studies revealed that there are improved qualities of life among adults living with the viruses taking antiretroviral therapy but there is no explicit data showing gender differences in health related quality of life. Aim. To assess gender differences in HRQOL and its associated factors among people living with HIV and on highly active antiretroviral therapy in public health institutions of Mekelle town, Northern Ethiopia. Methods. A comparative cross-sectional study was conducted among 494 adult people living with HIV taking ART services. Quality of life was measured using WHOQOL-HIV BREF. Result. There was a statistically significant gender difference (P < 0.05) in HRQOL among PLHIV on HAART. Females had low score in all HRQOL domains. High perceived stigma was strongly associated with poor psychological quality of domain among both female and male groups with [AOR = 2.89(1.69,4.96)] and [AOR = 2.5(1.4,4.4)], respectively. Conclusion. There was statistically significant gender difference in all quality of life domains. Public health interventions to improve HRQOL of PLHIV should take in to account the physical, psychological, social, environmental, and spiritual health of PLHIV during treatment, care, and support. PMID:25632393

  6. Climate change in winter versus the growing-season leads to different effects on soil microbial activity in northern hardwood forests

    NASA Astrophysics Data System (ADS)

    Sorensen, P. O.; Templer, P. H.; Finzi, A.

    2014-12-01

    Mean winter air temperatures have risen by approximately 2.5˚ C per decade over the last fifty years in the northeastern U.S., reducing the maximum depth of winter snowpack by approximately 26 cm over this period and the duration of winter snow cover by 3.6 to 4.2 days per decade. Forest soils in this region are projected to experience a greater number of freeze-thaw cycles and lower minimum winter soil temperatures as the depth and duration of winter snow cover declines in the next century. Climate change is likely to result not only in lower soil temperatures during winter, but also higher soil temperatures during the growing-season. We conducted two complementary experiments to determine how colder soils in winter and warmer soils in the growing-season affect microbial activity in hardwood forests at Harvard Forest, MA and Hubbard Brook Experimental Forest, NH. A combination of removing snow via shoveling and buried heating cables were used to induce freeze-thaw events during winter and to warm soils 5˚C above ambient temperatures during the growing-season. Increasing the depth and duration of soil frost via snow-removal resulted in short-term reductions in soil nitrogen (N) production via microbial proteolytic enzyme activity and net N mineralization following snowmelt, prior to tree leaf-out. Declining mass specific rates of carbon (C) and N mineralization associated with five years of snow removal at Hubbard Brook Experimental Forest may be an indication of microbial physiological adaptation to winter climate change. Freeze-thaw cycles during winter reduced microbial extracellular enzyme activity and the temperature sensitivity of microbial C and N mineralization during the growing-season, potentially offsetting nutrient and soil C losses due to soil warming in the growing-season. Our multiple experimental approaches show that winter climate change is likely to contribute to reduced microbial activity in northern hardwood forests.

  7. Physical Activity and Fitness of First Nations Youth in a Remote and Isolated Northern Ontario Community: A Needs Assessment.

    PubMed

    Gates, Michelle; Hanning, Rhona; Gates, Allison; Stephen, Judy; Fehst, Andrew; Tsuji, Leonard

    2016-02-01

    Among a group of First Nations youth, this research aimed to obtain objective measures of anthropometry, physical activity (PA) and fitness; to identify any group-level differences by sex, body mass index, waist circumference and body fat categories; to assess the barriers and supports to PA. Youth participated in anthropometric measures (BMI, waist circumference, body fat percentage), PA assessment (3 days of accelerometry) and fitness testing (guided by the Canadian Physical Activity, Fitness and Lifestyle Approach). Barriers and supports were assessed via environmental scan and focus groups. Descriptive statistics were compared to reference data. Group differences by sex, BMI status, waist circumference and body fat categories were tested using Mann-Whitney U and Chi square tests (p ≤ 0.05). Qualitative data were assembled into one file and coded manually for categories and themes. Seventy-two youth (12.1 ± 1.1 years, 61.1% male) participated in at least one measure; 36 completed the accelerometry. Sixty-three percent were overweight or obese, 51% were abdominally obese and 21% had excess body fat. Most (86.1%) met Canada's PA guidelines. Boys were more active than girls (p = 0.025) and had greater cardiorespiratory endurance (p = 0.003). Overweight, obese, or abdominally obese youth had lower cardiorespiratory endurance than normal weight youth (p < 0.001). Barriers and supports fell under the main themes: motivation, role models, personnel and facilities, environment and programs. Based on this assessment, youth in this community are active, but not sufficiently physically fit, especially among those affected by obesity and abdominal obesity. The findings, in addition to the numerous barriers to PA, support the community's desire for school-based PA programming. PMID:26175076

  8. Response of Northern Hemisphere Mid- and High- Latitude Storm Activities to Arctic Sea Ice Forcing: A Modeling Investigation

    NASA Astrophysics Data System (ADS)

    Zhang, X.; Basu, S.

    2015-12-01

    Arctic sea ice has exhibited a rapid reduction and large fluctuations during recent decades in conjunction with a warming climate. To identify sea ice impacts on extratropical storm tracks and associated surface climate, we employed the NCAR's Community Atmosphere Model to conduct a suite of sensitivity experiments, in which the model is solely forced with observed time-varying sea-ice concentration from 1979 to 2008. A storm identification and tracking algorithm was applied for analyzing variability of and changes in storm activities simulated by the model. The results show that reduced sea-ice cover enhances Arctic storm activity and increases warm moist air advection into the Arctic. As a consequence, Arctic surface air temperature (SAT) throughout the year and precipitation in spring, summer and fall seasons increase. By contrast, storm activity weakens and anticyclones strengthen over Eurasia. The strengthened anticyclones lead to a decrease in cloud cover, precipitation and SATs in both fall and winter seasons. These findings also suggest that Arctic sea ice not only impacts local, but also lower latitude weathers and climate.

  9. Performance of PCR-reverse blot hybridization assay for detection of rifampicin-resistant Mycobacterium leprae.

    PubMed

    Wang, Hye-young; Kim, Hyunjung; Kim, Yeun; Bang, Hyeeun; Kim, Jong-Pill; Hwang, Joo Hwan; Cho, Sang-Nae; Kim, Tae Ue; Lee, Hyeyoung

    2015-10-01

    Drug resistance in Mycobacterium leprae is a significant problem in countries where leprosy is endemic. A sensitive, specific, and high-throughput reverse blot hybridization assay (REBA) for the detection of genotypic resistance to rifampicin (RIF) was designed and evaluated. It has been shown that resistance to RIF in M. leprae involves mutations in the rpoB gene encoding the -subunit of the RNA polymerase. The PCR-REBA simultaneously detects both 6 wild-type regions and 5 different mutations (507 AGC, 513 GTG, 516 TAT, 531 ATG, and 531 TTC) including the most prevalent mutations at positions 507 and 531. Thirty-one clinical isolates provided by Korea Institute of Hansen-s Disease were analyzed by PCR-REBA with RIF resistance of rpoB gene. As a result, missense mutations at codons 507 AGC and 531 ATG with 2-nucleotide substitutions were found in one sample, and a missense mutation at codon 516 TAT and ΔWT6 (deletion of 530-534) was found in another sample. These cases were confirmed by DNA sequence analysis. This rapid, simple, and highly sensitive assay provides a practical alternative to sequencing for genotypic evaluation of RIF resistance in M. leprae. PMID:26428919

  10. Analysis of common mitochondrial DNA mutations by allele-specific oligonucleotide and Southern blot hybridization.

    PubMed

    Tang, Sha; Halberg, Michelle C; Floyd, Kristen C; Wang, Jing

    2012-01-01

    Mitochondrial disorders are clinically and genetically heterogeneous. There are a set of recurrent point mutations in the mitochondrial DNA (mtDNA) that are responsible for common mitochondrial diseases, including MELAS (mitochondrial encephalopathy, lactic acidosis, stroke-like episodes), MERRF (myoclonic epilepsy and ragged red fibers), LHON (Leber's hereditary optic neuropathy), NARP (neuropathy, ataxia, retinitis pigmentosa), and Leigh syndrome. Most of the pathogenic mtDNA point mutations are present in the heteroplasmic state, meaning that the wild-type and mutant-containing mtDNA molecules are coexisting. Clinical heterogeneity may be due to the degree of mutant load (heteroplasmy) and distribution of heteroplasmic mutations in affected tissues. Additionally, Kearns-Sayre syndrome and Pearson syndrome are caused by large mtDNA deletions. In this chapter, we describe a multiplex PCR/allele-specific oligonucleotide (ASO) hybridization method for the screening of 13 common point mutations. This method allows the detection of low percentage of mutant heteroplasmy. In addition, a nonradioactive Southern blot hybridization protocol for the analysis of mtDNA large deletions is also described. PMID:22215554

  11. Easy and Fast Western Blotting by Thin-Film Direct Coating with Suction.

    PubMed

    Liu, Chao-Yuan; Lu, De-Chao; Jiang, Yi-Wei; Yen, Yi-Kuang; Chang, Shih-Chung; Wang, An-Bang

    2016-06-21

    Thin-film direct coating (TDC) has been successfully used in Western blotting (WB). In this study, the advanced technique of TDC with suction (TDCS) was developed to reduce the consumption amount of antibody by a factor of up to 10(4) in comparison with the amount consumed by the conventional WB using the capillary tube without any need of special micromachining processes. The operation time for completely finishing a high-quality WB can be reduced from 3 h in conventional WB to about 5 min or even less by TDCS. In addition, the signal-to-noise ratio of the immunoblotting by TDCS can be markedly increased. TDCS WB showed a high linearity within a 6-log2 dynamic range for detecting 90-6000 ng of purified recombinant glutathione-S-transferase (GST) proteins and could particularly detect extrinsic GST proteins added in crude Escherichia coli or 293T cell lysates. Moreover, a protein mixture containing bovine serum albumin, GST, and ubiquitin could be specifically probed in parallel with their corresponding antibodies through multichannel TDCS WB. This simple and innovative TDCS WB offers various potential applications in simultaneously finishing multiple antibody-antigen screenings in a fast and single experiment. PMID:27254752

  12. Pairwise detection of site-specific receptor phosphorylations using single-molecule blotting

    PubMed Central

    Kim, Kyung Lock; Kim, Daehyung; Lee, Seongsil; Kim, Su-Jeong; Noh, Jung Eun; Kim, Joung-Hun; Chae, Young Chan; Lee, Jong-Bong; Ryu, Sung Ho

    2016-01-01

    Post-translational modifications (PTMs) of receptor tyrosine kinases (RTKs) at the plasma membrane (PM) determine the signal transduction efficacy alone and in combination. However, current approaches to identify PTMs provide ensemble results, inherently overlooking combinatorial PTMs in a single polypeptide molecule. Here, we describe a single-molecule blotting (SiMBlot) assay that combines biotinylation of cell surface receptors with single-molecule fluorescence microscopy. This method enables quantitative measurement of the phosphorylation status of individual membrane receptor molecules and colocalization analysis of multiple immunofluorescence signals to directly visualize pairwise site-specific phosphorylation patterns at the single-molecule level. Strikingly, application of SiMBlot to study ligand-dependent epidermal growth factor receptor (EGFR) phosphorylation, which is widely thought to be multi-phosphorylated, reveals that EGFR on cell membranes is hardly multi-phosphorylated, unlike in vitro autophosphorylated EGFR. Therefore, we expect SiMBlot to aid understanding of vast combinatorial PTM patterns, which are concealed in ensemble methods, and to broaden knowledge of RTK signaling. PMID:27009355

  13. Digital chemiluminescence imaging of DNA sequencing blots using a charge-coupled device camera.

    PubMed Central

    Karger, A E; Weiss, R; Gesteland, R F

    1992-01-01

    Digital chemiluminescence imaging with a cryogenically cooled charge-coupled device (CCD) camera is used to visualize DNA sequencing fragments covalently bound to a blotting membrane. The detection is based on DNA hybridization with an alkaline phosphatase(AP) labeled oligodeoxyribonucleotide probe and AP triggered chemiluminescence of the substrate 3-(2'-spiro-adamantane)-4-methoxy-4-(3"-phosphoryloxy)phenyl- 1,2-dioxetane (AMPPD). The detection using a direct AP-oligonucleotide conjugate is compared to the secondary detection of biotinylated oligonucleotides with respect to their sensitivity and nonspecific binding to the nylon membrane by quantitative imaging. Using the direct oligonucleotide-AP conjugate as a hybridization probe, sub-attomol (0.5 pg of 2.7 kb pUC plasmid DNA) quantities of membrane bound DNA are detectable with 30 min CCD exposures. Detection using the biotinylated probe in combination with streptavidin-AP was found to be background limited by nonspecific binding of streptavidin-AP and the oligo(biotin-11-dUTP) label in equal proportions. In contrast, the nonspecific background of AP-labeled oligonucleotide is indistinguishable from that seen with 5'-32P-label, in that respect making AP an ideal enzymatic label. The effect of hybridization time, probe concentration, and presence of luminescence enhancers on the detection of plasmid DNA were investigated. Images PMID:1480487

  14. Retrospective Study of Hemoparasites in Cattle in Southern Italy by Reverse Line Blot Hybridization

    PubMed Central

    CECI, Luigi; IARUSSI, Fabrizio; GRECO, Beatrice; LACINIO, Rosanna; FORNELLI, Stefania; CARELLI, Grazia

    2014-01-01

    ABSTRACT Tick-borne diseases are widespread in tropical and temperate regions and are responsible for important economic losses in those areas. In order to assess the presence and prevalence of various pathogens in southern Italy, we retrospectively analyzed cattle blood samples collected for a previous study in 2000 using reverse line blot (RLB) hybridization. The study had been carried out in three regions of southern Italy on 1,500 randomly selected and apparently healthy adult cattle. RLB showed that 43.7% of the cattle were positive for nine different species of hemoparasites with either a single infection or a mixed infection. Theileria buffeli was the most common species found, being present in 27.3% of the animals, followed by Anaplasma marginale in 18.1%, Anaplasma centrale in 13.8%, Babesia bigemina and Anaplasma bovis in 4.2%, Anaplasma phagocytophilum in 1.7%, Babesia bovis in 1.6%, Babesia major in 0.2% and Babesia divergens in 0.1%. Complete blood counts showed different degrees of anemia in 363 animals (24.2%) and of these, 169 were RLB-positive for at least one pathogen. Among the ticks that were collected from the cattle, the following species were identified: Rhipicephalus bursa, Ixodes ricinus, Hyalomma marginatum, Boophilus annulatus, Dermacentor marginatus and Haemaphysalis (sulcata, parva, inermis and punctata). The results obtained confirmed the spread of endemic tick-borne pathogens in the regions studied. PMID:24614604

  15. Identification of Yeast V-ATPase Mutants by Western Blots Analysis of Whole Cell Lysates

    NASA Astrophysics Data System (ADS)

    Parra-Belky, Karlett

    2002-11-01

    A biochemistry laboratory was designed for an undergraduate course to help students better understand the link between molecular engineering and biochemistry. Students identified unknown yeast strains with high specificity using SDS-PAGE and Western blot analysis of whole cell lysates. This problem-solving exercise is a common application of biochemistry in biotechnology research. Three different strains were used: a wild-type and two mutants for the proton pump vacuolar ATPase (V-ATPase). V-ATPases are multisubunit enzymes and the mutants used were deletion mutants; each lacked one structural gene of the complex. After three, three-hour labs, mutant strains were easily identified by the students and distinguished from wild-type cells analyzing the pattern of SDS-PAGE distribution of proteins. Identifying different subunits of one multimeric protein allowed for discussion of the structure and function of this metabolic enzyme, which captured the interest of the students. The experiment can be adapted to other multimeric protein complexes and shows improvement of the described methodology over previous reports, perhaps because the problem and its solution are representative of the type of techniques currently used in research labs.

  16. Detection of strawberry vein banding virus by polymerase chain reaction and dot blot hybridization.

    PubMed

    Mráz, I; Petrzik, K; Fránová-Honetslegrová, J; Síp, M

    1997-08-01

    Strawberry vein banding virus (SVBV) is one of seventeen members of the family Caulimoviridae. Natural infection with the virus is known in Fragaria species only. Infections caused by SVBV are often symptomless (1), but their significance increases in mixed infections with strawberry crinkle or strawberry latent C viruses (2,3). This virus has been originally found on strawberries in USA and firstly described by Frazier (4), but it is probably world-wide distributed by planting or breeding materials. SVBV has been observed on cultivated strawberries in North America, Australia, Brazil, Japan (5) and recently in Europe (6,7). The concentration of SVBV in infected plants is usually very low. Its detection by ELISA is impossible because of lack of specific antibodies. Evidence of the caulimovirus nature of SVBV has been confirmed by its circular dsDNA genome, shape and size of viral particles (8), presence of cytoplasmic inclusion bodies typical for caulimoviruses, and distant serological relationship with cauliflower mosaic virus (CaMV, 9). In this paper we present detection of SVBV by combination of two detection methods--polymerase chain reaction (PCR) and dot blot hybridization with a non-radioactive probe. PMID:9391655

  17. The blot rolling assay: a method for identifying adhesion molecules mediating binding under shear conditions.

    PubMed

    Sackstein, Robert; Fuhlbrigge, Robert

    2006-01-01

    Adhesive interactions of cells with blood vessel walls under flow conditions are critical to a variety of processes, including hemostasis, leukocyte trafficking, tumor metastasis, and atherosclerosis. We have developed a new technique for the observation of binding interactions under shear, which we have termed the "blot rolling assay." In this method, molecules in a complex mixture are resolved by gel electrophoresis and transferred to a membrane. This membrane can be rendered semitransparent and incorporated into a parallel-plate flow chamber apparatus. Cells or particles bearing adhesion proteins of interest are then introduced into the chamber under controlled flow, and their interactions with individual components of the immobilized substrates can be visualized in real time. The substrate molecules can be identified by staining with specific antibodies or by excising the relevant band(s) and performing mass spectrometry or microsequencing of the isolated material. Thus, this method allows for the identification, within a complex mixture and without previous isolation or purification, of both known and novel adhesion molecules capable of binding under shear conditions. PMID:16799202

  18. [Evaluation of IHA, ELISA and Western Blot tests in diagnosis of pulmonary cystic hidatidosis].

    PubMed

    Akisu, Ciler; Bayram Delibaş, Songül; Yuncu, Gökhan; Aksoy, Umit; Ozkoç, Soykan; Biçmen, Can; Sevinç, Serpil; Yaldiz, Sadik

    2005-01-01

    Pulmonary cystic hidatidosis caused by the larval stages of Echinococcus granulosus is a common parasitic disease in Turkey and throughout the world. In this study IHA, ELISA and Western Blot (WB) tests were performed with a panel of 59 sera from 31 surgically confirmed pulmonary cystic hidatidosis patients, 18 patients with pulmonary disease other than cystic hidatidosis and 10 healthy individual. The overall sensitivity of the IHA, ELISA and WB tests used for the serodiagnosis of pulmonary cystic hidatidosis were found as 96.7%, 87.1%, 100% and the specificities were 82.2%, 89.2% and %85.7, respectively. Using the WB test 8-12 kDa, 24 kDa and 124 kDa bands were detected as valuable for surgically confirmed patients' sera. One or more of these bands were also detected in sera of four patients with other pulmonary diseases false-positively. In conclusion conventional serologic test like IHA and ELISA is valuable in diagnosis of pulmonary cystic hidatidosis, also evaluation of some specific bands in WB would contribute to the diagnosis. PMID:16100652

  19. HYDRATE RESEARCH ACTIVITIES THAT BOTH SUPPORT AND DERIVE FROM THE MONITORING STATION/SEA-FLOOR OBSERVATORY, MISSISSIPPI CANYON 118, NORTHERN GULF OF MEXICO

    SciTech Connect

    Lutken, Carol

    2013-07-31

    A permanent observatory has been installed on the seafloor at Federal Lease Block, Mississippi Canyon 118 (MC118), northern Gulf of Mexico. Researched and designed by the Gulf of Mexico Hydrates Research Consortium (GOM-HRC) with the geological, geophysical, geochemical and biological characterization of in situ gas hydrates systems as the research goal, the site has been designated by the Bureau of Ocean Energy Management as a permanent Research Reserve where studies of hydrates and related ocean systems may take place continuously and cooperatively into the foreseeable future. The predominant seafloor feature at MC118 is a carbonate-hydrate complex, officially named Woolsey Mound for the founder of both the GOM-HRC and the concept of the permanent seafloor hydrates research facility, the late James Robert “Bob” Woolsey. As primary investigator of the overall project until his death in mid-2008, Woolsey provided key scientific input and served as chief administrator for the Monitoring Station/ Seafloor Observatory (MS-SFO). This final technical report presents highlights of research and accomplishments to date. Although not all projects reached the status originally envisioned, they are all either complete or positioned for completion at the earliest opportunity. All Department of Energy funds have been exhausted in this effort but, in addition, leveraged to great advantage with additional federal input to the project and matched efforts and resources. This report contains final reports on all subcontracts issued by the University of Mississippi, Administrators of the project, Hydrate research activities that both support and derive from the monitoring station/sea-floor Observatory, Mississippi Canyon 118, northern Gulf of Mexico, as well as status reports on the major components of the project. All subcontractors have fulfilled their primary obligations. Without continued funds designated for further project development, the Monitoring Station

  20. Authigenic carbonates from an active cold seep of the northern South China Sea: New insights into fluid sources and past seepage activity

    NASA Astrophysics Data System (ADS)

    Feng, Dong; Chen, Duofu

    2015-12-01

    Site F (also named Formosa ridge) represents the most vigorous cold seep on the northern South China Sea continental slope. In order to constrain the fluid sources and intensities of seepage, we investigated the petrography, mineralogy, stable carbon and oxygen isotopic compositions, element geochemistry and radiocarbon dating of authigenic carbonate rocks retrieved from the seafloor. Carbonate rocks mainly occurred as crusts, nodules, and nodular masses incorporated in carbonate breccias. The carbonates were comprised mainly of high-Mg calcite and aragonite. The δ13C of authigenic carbonate varied from -55.3‰ to -34.3‰ (mean: -48.5‰; n=47) vs. V-PDB, suggesting biogenic methane is the dominant carbon source fuelling the system. The δ18OCarbonate values were from +3.6‰ to +4.8‰ (mean: +3.9‰; n=47). The observed 18O-enrichement in relation to calculated equilibrium values in the carbonates probably reflects dissolution of gas hydrates. Combination of seafloor observations and the obtained AMS 14C ages suggest that (1) initiation of methane seepage from at least 10.6 ka ago; (2) environmental conditions may have been favorable for enhanced fluid seepage around 6 ka BP and (3) relatively low intensity of seepage from 2 ka BP till today.

  1. Developing a Small-scale De-fluoridation Filter for use in Rural Northern Ghana with Activated Alumina as the Sorbent

    NASA Astrophysics Data System (ADS)

    Craig, L.; Stillings, L. L.; Decker, D.; Thomas, J.

    2013-12-01

    In northern Ghana, groundwater is the main source of household water and is generally considered a safe and economical source of drinking water. However in some areas it contains fluoride (F-) concentrations above the 1.5 ppm limit recommended by the World Health Organization, putting the users at risk of fluorosis. The study area in the Upper East Region of northern Ghana has pockets of groundwater F- up to 4.6 ppm and, as a result, also has a high percentage of residents with dental fluorosis. They have no alternative water source and, because of the poverty and limited access to technology, the affected community lacks the capacity to set up advanced treatment systems. One proposed solution is to attach F- adsorption filters to the wells, since adsorption is considered a simple and cost effective approach for treating high F- drinking water. This study evaluates activated alumina as a sorbent for use in de-fluoridation filters in the study area. We evaluated the long-term adsorption capacity of activated alumina, as well as potential changes in F- adsorption rate and capacity with grain size. We measured differences in positive surface charge (as C m-2) via slow acid titration, as well as F- loading with varied prior hydration time. Experimental results from this research show no notable change in F- adsorption or positive surface charge when the activated alumina surface was pre-equilibrated in distilled water from 24 hours up to 30 weeks before the experiment. The results of F- loading show a maximum of ~3.4 mg F- sorbed per gm activated alumina (at initial pH ~6.9, initial F- 1 to 60 ppm, and 20 hr reaction time). The pH dependent surface charge shows a maximum of ~0.14 C m-2 at pH of ~4.4 and zero surface charge at pH ~8.5. F- loading experiments were conducted with grain size ranges 0.125 to 0.250 mm and 0.5 to 1.0 mm to evaluate changes in F- adsorption rate (initial pH ~6.9, initial F- 10 ppm) and F- loading (initial pH ~6.9, initial F- 1 to 60 ppm, 20 hr

  2. Variability of CCN Activation Behaviour of Aerosol Particles in the Marine Boundary Layer of the Northern and Southern Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Henning, Silvia; Dieckmann, Katrin; Hartmann, Susan; Schäfer, Michael; Wu, Zhijun; Merkel, Maik; Wiedensohler, Alfred; Stratmann, Frank

    2013-04-01

    The variability of cloud condensation nucleus (CCN) activation behaviour and total CCN number concentrations was investigated during three ship cruises. Measurements were performed in a mobile laboratory on the German research vessel FS Polarstern cruising between Cape Town and Bremerhaven (April / May and October / November 2011) as well as between Punta Arenas and Bremerhaven (April / May 2012). CCN size distributions were measured for supersaturations between 0.1% and 0.4% using a Cloud Condensation Nucleus Counter (DMT, USA). Aerosol particle and CCN total number concentrations as well as the hygroscopicity parameter κ (Petters and Kreidenweis, 2007) were determined. Furthermore, size distribution data were collected. The hygroscopicity parameter κ featured a high variability during the cruises, with a median κ-value of 0.52 ± 0.26. The κ-values are depended on air mass origin; and are as expected mainly dominated by marine influences, but also long range transport of aerosol particles was detected. In the Celtic Sea, κ was found to be lower than that of clean marine aerosol particles (0.72 ± 0.24; Pringle et al., 2010) with κ-values ~0.2, possibly influenced by anthropogenic emissions from Europe. Close to the West African coast particle hygroscopicity was found to be influenced by the Saharan dust plume, resulting in low κ-values ~0.25. Petters, M.D. and S.M. Kreidenweis (2007), A single parameter representation of hygroscopic growth and cloud condensation nucleus activity, Atmos. Chem. and Phys., 7, 1961-1971. Pringle, K.J., H. Tost, A. Pozzer, U. Pöschl, and J. Lelieveld (2010), Global distribution of the effective aerosol hygroscopicity parameter for CCN activation, Atmos. Chem. Phys., 10, 5241-5255.

  3. Remotely Sensed Active Layer Thickness (ReSALT) from InSAR data near Toolik Lake in Northern Alaska

    NASA Astrophysics Data System (ADS)

    Chen, A. C.; Liu, L.; Schaefer, K. M.; Parsekian, A.; Jafarov, E. E.; Zebker, H. A.; Zhang, T.

    2014-12-01

    Toolik Field Station is built on spatially continuous permafrost on the north slope of Alaska. Seasonal surface subsidence and uplift occurs in permafrost regions due to thaw settlement and frost heave as the active layer thaws and refreezes. Using L-band (23.6 cm wavelength) InSAR data from ALOS-PALSAR acquired between 2006 and 2010, we use a small-baseline subset (SBAS) method to estimate seasonal surface subsidence and retrieve fine-resolution maps of active layer thickness (ALT) for a ~25x25 km area surrounding Toolik Field Station (located at 68.63°N, -149.60°E). We compare these remotely sensed ALT (ReSALT) results with in situ data from: 1) the Circumpolar Active Layer Monitoring (CALM) network showing mean ALT of ~40-50 cm in the region surrounding Toolik Field Station, corresponding to seasonal subsidence of 1 to 2 cm, and 2) mechanical probing measurements of ALT, obtained during field work in the study area in August 2014. We also solve for secular subsidence trends from the InSAR data. The trends are close to zero in most places, but larger subsidence trends in some isolated areas could be due to thermokarst processes (long-term thawing of ice-rich permafrost). We note, however, that downslope motion due to gelifluction cannot be separated from vertical thermokarst-related deformation without incorporating InSAR measurements from multiple look angles. Two key limitations to our method are the spatial variability of volumetric soil moisture content and the accuracy of the DEM needed to correct for topographic effects. We investigate the use of bulk volumetric water content inferred from ground-penetrating radar (GPR) data to improve the ReSALT retrieval algorithm. We also quantify the effect of DEM accuracy on ReSALT uncertainties, leads to requirements for DEM accuracy in InSAR-based ALT retrieval.

  4. Late cretaceous extensional tectonics and associated igneous activity on the northern margin of the Gulf of Mexico Basin

    NASA Technical Reports Server (NTRS)

    Bowen, R. L.; Sundeen, D. A.

    1985-01-01

    Major, dominantly compressional, orogenic episodes (Taconic, Acadian, Alleghenian) affected eastern North America during the Paleozoic. During the Mesozoic, in contrast, this same region was principally affected by epeirogenic and extensional tectonism; one episode of comparatively more intense tectonic activity involving extensive faulting, uplift, sedimentation, intrusion and effusion produced the Newark Series of eposits and fault block phenomena. This event, termed the Palisades Disturbance, took place during the Late Triassic - Earliest Jurassic. The authors document a comparable extensional tectonic-igneous event occurring during the Late Cretaceous (Early Gulfian; Cenomanian-Santonian) along the southern margin of the cratonic platform from Arkansas to Georgia.

  5. The response of nitrifying microbial assemblages to ammonium (NH4+) enrichment from salmon farm activities in a northern Chilean Fjord

    NASA Astrophysics Data System (ADS)

    Elizondo-Patrone, Claudia; Hernández, Klaudia; Yannicelli, Beatriz; Olsen, Lasse Mork; Molina, Verónica

    2015-12-01

    The consequences of aquaculture include alterations in nitrogen cycling in aquatic environments that may lead to ecosystem degradation. Herein salmon aquaculture release of ammonium (NH4+) to the water column and its effects on natural archaea and bacteria ammonia-oxidizers (AOA and AOB) and nitrite-oxidizing bacteria (NOB) community structure were studied in the Comau fjord using molecular approaches, such as: cloning (AOA and AOB richness), qPCR for C. Nitrosopumilus maritimus (AOA) and Nitrospina sp. (NOB) abundance (DNA) and RT-qPCR only for Nitrospina sp activity (RNA). Sampling was carried out in brackish (0.7-25 salinity, <5 m depth) and marine (>30 salinity, 25 m depth) waters during contrasting salmon production periods: rest (winter 2012), growth and harvest (summer and winter 2013). During the rest period, the highest NH4+ concentration was observed at Vodudahue River, whereas during productive periods NH4+ accumulated in the brackish layer inside salmon cages and in the vicinty (up to 700 m distance from the cages). The nitrifier community from the fjord reference station (Stn-C) was characterized by C. N. maritimus (AOA) and Nitrosomonas sp. (AOB) sequences affiliated with cosmopolitan ecotypes (e.g., marine, freshwater, hydrothermal), maxima abundances of C. N. maritimus (AOA) and Nitrospina sp. and extreme ranges of Nitrospina sp. activity occurred in the brackish layer. During productive periods, abundances of C. N. maritimus were co-varied with NH4+ concentrations inside salmon cages (summer) and the adjacent areas (winter). Productive periods were characterized by lower abundances but more homogeneity between brackish and marine areas than for the Stn-C nitrifiers. The physiological state of Nitrospina sp. estimated from cDNA:DNA ratios indicated higher growth during winter 2013 associated with NH4+ enrichment derived from production and river input. Our results suggest that in Comau Fjord, NH4+ enrichment events occur during salmon production and

  6. Active tectonics in the Mygdonia basin (northern Greece): a combined seismological and remote-sensed geomorphology approach

    NASA Astrophysics Data System (ADS)

    Gkarlaouni, Charikleia; Andreani, Louis; Pennos, Chris; Gloaguen, Richard; Papadimitriou, Eleftheria; Kilias, Adamantios; Michail, Maria

    2014-05-01

    In Greek mainland, active extensional deformation resulted in the development of numerous seismogenic E- to SE-trending basins. The Mygdonia graben located in central Macedonia produced major historical earthquakes and poses a serious threat to the neighbouring city of Thessaloniki. Our aim is to determine which active seismic sources have the potential to generate strong events. Active tectonics shape the landscape, control the evolution of the fluvial network and cause the occurrence of strong and frequent earthquakes generated by fault populations. Thus, our approach combined both seismology and remote-sensed geomorphology. Seismological investigation and more especially relocation analysis was performed for recent seismicity in the area (2000-2012). Low magnitude earthquakes not exceeding 4.8 constitute the seismicity pattern for this period. Accurately determined focal parameters indicate that seismicity is not only localized along major fault zones. Smaller faults seem also to be activated. Temporal and spatial investigation show that seismicity is clustered and seismic bursts often migrate to adjacent faults. The hypocentral distribution of precisely determined microearthquake foci reveals the existence of high-angle (> 60º) normal faults dipping both south and north. This is consistent with fault plane solutions of stronger earthquakes. The largest amount of earthquakes is generated along the NW-SE sub-basin bounded from "Assiros-Analipsi" and "Lagina" fault zone, as well as in "Sochos" fault in the north which dips with approximately 70º-80º to the south. All these structures played an important role in the seismotectonic evolution of the area. We used geomorphic indices in order to analyse the landscapes of the Mygdonia region. Geomorphic indices were derived from DEM and computed using MATLAB scripts. We classified the landscapes according to their erosional stages using hypsometric integral and surface roughness. Both indices suggest stronger erosion

  7. U-series dating of co-seismic gypsum and submarine paleoseismology of active faults in Northern Chile (23°S)

    NASA Astrophysics Data System (ADS)

    Vargas, Gabriel; Palacios, Carlos; Reich, Martin; Luo, Shangde; Shen, Chuan-Chou; González, Gabriel; Wu, Yi-Chen

    2011-01-01

    The convergence of the Nazca and South American plates along the subduction margin of the central Andes results in large subduction earthquakes and tectonic activity along major fault systems. Despite its relevance, the paleoseismic record of this region is scarce, hampering our understanding about the relationship between the Andes building and earthquake occurrence. In this study, we used the U-series disequilibrium method to obtain absolute ages of paleoearthquake events associated with normal displacements along the active Mejillones and Salar del Carmen faults in the Coastal Range of the Atacama Desert of northern Chile. The 230Th- 234U disequilibrium ages in co-seismic gypsum salts sampled along the fault traces together with marine evidences indicate that earthquakes occurred at ca. 29.7 ± 1.7 ka, 11 ± 4 ka and 2.4 ± 0.8 ka. When coupled with paleoseismic marine and radiocarbon ( 14C) records in the nearby Mejillones Bay evidencing large dislocations along the Mejillones Fault, the geochronological dataset presented here is consistent with the notion that gypsum salts formed during large earthquakes as a result of co-seismic dilatancy pumping of saline waters along the major faults. Based on maximum observed cumulative vertical offsets in the studied faults, this phenomena could have occurred episodically at a rate in the order of 1:40 to 1:50 with respect to the very large subduction earthquakes during the latest Pleistocene-Holocene period. The results presented here reveal that the U-series disequilibrium method can be successfully applied to date the gypsum salts deposited along faults during seismic events, and therefore directly constrain the age of large paleoearthquakes in hyperarid and seismically active zones.

  8. A detection method of subrecent to recent tectonic activity in the anticlinal system of the northern Negev, Israel

    SciTech Connect

    Zilberman, E.; Wachs, D. )

    1988-02-01

    Geomorphological and geophysical methods combined with borehole information were employed to search for possible subrecent small-scale vertical movement along the anticlinal fold belt of the central Negev, Israel. Such tectonic deformation might indicate displacement on the buried reverse faults underneath the anticlines. Variations in the thickness of the alluvial fill in the study area, which are in accordance with the fold structures, could be an indication of recent folding activity along the anticlinal system. In order to detect these thickness variations in the alluvial fill, seismic refraction and electrical resistivity measurements were carries out along the valley of Nahal Besor, which crosses the anticlinal belt. The thickness variations of the alluvial fill along the valley were not found to indicate any significant tectonic movement along the anticlines during the Pleistocene. The thickest alluvium was found overlying a karst bedrock, hence karst relief is suggested to be responsible for these variations.

  9. Ovicidal Activity of Organophosphate, Oxadiazine, Neonicotinoid and Insect Growth Regulator Chemistries on Northern Strain Plum Curculio, Conotrachelus nenuphar

    PubMed Central

    Hoffmann, Eric J.; Middleton, Samantha M.; Wise, John C.

    2008-01-01

    An in vitro method was developed for assessing ovicidal effects of the organophosphate azinphos-methyl, the neonicotioids thiacloprid, thiamethoxam and clothianidin, the oxadiazine indoxacarb and the insect growth regulators novaluron and pyriproxifen on the plum curculio, Conotrachelus nenuphar (Herbst)(Coleoptera: Curculionidae). The baseline survivorship of this method was 88 percent. Plum curculio eggs were most sensitive to azinphos-methyl. Thiacloprid, clothianidin and the chitin synthesis inhibitor, novaluron, had LC50 values below 100 ppm. Thiamethoxam, indoxacarb and pyriproxifen were not ovicidal at 100 ppm. Octanol-water partitioning coefficients, log Kow, appeared to be an important indicator of ovicidal activity within the neonicotinoids. This new bioassay method eliminates the confounding of the insect-chemical and plant-chemical interactions and the results highlight the utility of a post-infestation curative approach to plum curculio management.

  10. Chemical composition and antifungal activity of Artemisia nilagirica essential oil growing in northern hilly areas of India.

    PubMed

    Sati, Sushil Chandra; Sati, Nitin; Ahluwalia, Vivek; Walia, Suresh; Sati, O P

    2013-01-01

    Essential oil extracted from aerial parts of Artemisia nilagirica was analysed by gas chromatography-mass spectroscopy. Forty-three constituents amounting to 98.16% of the total essential oil contents were identified. The essential oil contained approximately 79.91% monoterpenoids and 18.25% sesquiterpenoids. α-Thujone (36.35%), β-thujone (9.37%), germacrene D (6.32%), 4-terpineol (6.31%), β-caryophyllene (5.43%), camphene (5.47%) and borneol (4.12%) were identified as the major constituents. The essential oil exhibited significant antifungal activity against Rhizoctonia solani (ED(50), 85.75 mg L(-1)), Sclerotium rolfsii (ED(50), 87.63 mg L(-1)) and Macrophomina phaseolina (ED(50), 93.23 mg L(-1)). This study indicated that A. nilagirica essential oil can be used to control phytopathogenic fungi infesting agricultural crops and commodities. PMID:22348279

  11. Active and legacy mining in an arid urban environment: challenges and perspectives for Copiapó, Northern Chile.

    PubMed

    Carkovic, Athena B; Calcagni, Magdalena S; Vega, Alejandra S; Coquery, Marina; Moya, Pablo M; Bonilla, Carlos A; Pastén, Pablo A

    2016-08-01

    Urban expansion in areas of active and legacy mining imposes a sustainability challenge, especially in arid environments where cities compete for resources with agriculture and industry. The city of Copiapó, with 150,000 inhabitants in the Atacama Desert, reflects this challenge. More than 30 abandoned tailings from legacy mining are scattered throughout its urban and peri-urban area, which include an active copper smelter. Despite the public concern generated by the mining-related pollution, no geochemical information is currently available for Copiapó, particularly for metal concentration in environmental solid phases. A geochemical screening of soils (n = 42), street dusts (n = 71) and tailings (n = 68) was conducted in November 2014 and April 2015. Organic matter, pH and elemental composition measurements were taken. Notably, copper in soils (60-2120 mg/kg) and street dusts (110-10,200 mg/kg) consistently exceeded international guidelines for residential and industrial use, while a lower proportion of samples exceeded international guidelines for arsenic, zinc and lead. Metal enrichment occurred in residential, industrial and agricultural areas near tailings and the copper smelter. This first screening of metal contamination sets the basis for future risk assessments toward defining knowledge-based policies and urban planning. Challenges include developing: (1) adequate intervention guideline values; (2) appropriate geochemical background levels for key metals; (3) urban planning that considers contaminated areas; (4) cost-effective control strategies for abandoned tailings in water-scarce areas; and (5) scenarios and technologies for tailings reprocessing. Assessing urban geochemical risks is a critical endeavor for areas where extreme events triggered by climate change are likely, as the mud flooding that impacted Copiapó in late March 2015. PMID:26758741

  12. Meeting Northern Arizona's Supported Employment Training Needs.

    ERIC Educational Resources Information Center

    Martin, William E., Jr.; And Others

    In 1989 Northern Arizona University established a Supported Employment Training Center (SETC) to increase the number of trained job coaches in northern Arizona and provide knowledge and skills in supported employment to personnel from cooperating schools and agencies. First-year SETC activities focused on assessment of the training needs of…

  13. Application of reverse dot blot hybridization to simultaneous detection and identification of harmful algae.

    PubMed

    Chen, Guo Fu; Zhang, Chun Yun; Wang, Yuan Yuan; Chen, Wen

    2015-07-01

    Warning and monitoring projects of harmful algal blooms require simple and rapid methods for simultaneous and accurate detection and identification of causative algae present in the environmental samples. Here, reverse dot blot hybridization (RDBH) was employed to simultaneously detect several harmful algae by using five representative bloom-forming microalgae along the Chinese coast. A set of specific probes for RDBH were developed by PCR, cloning, and sequencing of the internal transcribed spacer (ITS), alignment analysis, and probe design. Each probe was oligo (dT)-tailed and spotted onto positively charged nylon membrane to make up a low-density oligonucleotide array. Universal primers designed within the conserved regions were used to amplify the ITS sequences by using genomic DNA of target as templates. The digoxigenin (Dig)-labeled PCR products were denatured and then hybridized to the oligonucleotide array. The array produced a unique hybridization pattern for each target species differentiating them from each other. The preparations of oligonucleotide array and hybridization conditions were optimized. The developed RDBH demonstrated a detection limit up to 10 cells. The detection performance of RDBH was relatively stable and not affected by non-target species and the fixation time of target species over at least 30 days. The RDBH could recover all the target species from the simulated field samples and target species confirmed by the subsequent microscopy examination in the environmental samples. These results indicate that RDBH can be a new technical platform for parallel discrimination of harmful algae and is promising for environmental monitoring of these microorganisms. PMID:25731086

  14. Multiplex PCR and Reverse Line Blot Hybridization Assay (mPCR/RLB)

    PubMed Central

    O'Sullivan, Matthew V. N.; Zhou, Fei; Sintchenko, Vitali; Kong, Fanrong; Gilbert, Gwendolyn L.

    2011-01-01

    Multiplex PCR/Reverse Line Blot Hybridization assay allows the detection of up to 43 molecular targets in 43 samples using one multiplex PCR reaction followed by probe hybridization on a nylon membrane, which is re-usable. Probes are 5' amine modified to allow fixation to the membrane. Primers are 5' biotin modified which allows detection of hybridized PCR products using streptavidin-peroxidase and a chemiluminescent substrate via photosensitive film. With low setup and consumable costs, this technique is inexpensive (approximately US$2 per sample), high throughput (multiple membranes can be processed simultaneously) and has a short turnaround time (approximately 10 hours). The technique can be utilized in a number of ways. Multiple probes can be designed to detect sequence variation within a single amplified product, or multiple products can be amplified simultaneously, with one (or more) probes used for subsequent detection. A combination of both approaches can also be used within a single assay. The ability to include multiple probes for a single target sequence makes the assay highly specific. Published applications of mPCR/RLB include detection of antibiotic resistance genes1,2, typing of methicillin-resistant Staphylococcus aureus3-5 and Salmonella sp6, molecular serotyping of Streptococcus pneumoniae7,8, Streptococcus agalactiae9 and enteroviruses10,11, identification of Mycobacterium sp12, detection of genital13-15 and respiratory tract16 and other17 pathogens and detection and identification of mollicutes18. However, the versatility of the technique means the applications are virtually limitless and not restricted to molecular analysis of micro-organisms. The five steps in mPCR/RLB are a) Primer and Probe design, b) DNA extraction and PCR amplification c) Preparation of the membrane, d) Hybridization and detection, and e) Regeneration of the Membrane. PMID:21847083

  15. Evaluation of a Western Blot Test in an Outbreak of Acute Pulmonary Histoplasmosis

    PubMed Central

    Pizzini, Claudia V.; Zancopé-Oliveira, Rosely M.; Reiss, Errol; Hajjeh, Rana; Kaufman, Leo; Peralta, José Mauro

    1999-01-01

    A western blot (WB) test was evaluated for detection of antibodies against native glycosylated and chemically deglycosylated M and H antigens of Histoplasma capsulatum in serum obtained from patients during the acute phase of pulmonary histoplasmosis that occurred during an outbreak. Of 275 serum samples tested by immunodiffusion and complement fixation (CF) samples from 40 patients affected during this outbreak and from 37 negative controls were tested by WB test. A group of patients whose sera were negative for CF antibodies and precipitins early in the acute stage of histoplasmosis but who all seroconverted during convalescence 6 weeks later were tested with the WB test. Antibodies against untreated H and M antigens were detected at a 1:100 dilution by WB test in 45% of the 20 acute-phase serum samples and in all 20 of the convalescent-phase specimens. The WB test’s sensitivity for acute-phase specimens increased to 90% (18 of 20 specimens) when H and M antigens were treated by periodate oxidation to inactivate susceptible carbohydrate epitopes. When native glycosylated antigens were used in the WB test, positive reactions were observed in negative control serum specimens (3 of 37 specimens; 8%) and in serum specimens obtained from asymptomatic persons screened as part of the outbreak investigation (13 of 20 specimens; 65%). These positive reactions were also attributed to glycosidic epitopes since the specificity of the WB test increased from 78 to 100% when periodate-treated H and M antigens were used. WB test with deglycosylated H and M antigens of histoplasmin provides a rapid, sensitive, and specific test to diagnose acute pulmonary histoplasmosis before precipitins can be detected. PMID:9874658

  16. Enzyme-linked immunoelectrotransfer blot test for diagnosis of human hydatid disease.

    PubMed Central

    Verastegui, M; Moro, P; Guevara, A; Rodriguez, T; Miranda, E; Gilman, R H

    1992-01-01

    Sera from 71 patients with surgically confirmed hydatid disease (which is caused by Echinococcus granulosus) were studied by an enzyme-linked immunoelectrotransfer blot (EITB) assay. Sera from patients either with other cestode infections or with another illness were used as controls. Results of the EITB test for hydatidosis were compared with those of the double-diffusion (DD5) test and an enzyme-linked immunosorbent assay (ELISA). In the EITB assay with bovine lyophilized hydatid fluid, three antigen bands of 8, 16, and 21 kDa were diagnostically important. The sensitivity of the assay by using these antigen bands was 80% for hepatic cysts, 56% for pulmonary cysts, and 56% for cysts located in multiple organs. In sera from controls, the specificity of the EITB assay was 100%. Cross-reactions to the 8-, 16-, and 21-kDa bands occurred, respectively, in 12, 4, and 4% of sera from patients with cysticercosis. No cross-reactions were noted in patients infected with Hymenolepis nana. The ELISA in which swine hydatid fluid was used as the antigen was as sensitive as the EITB test but was less specific (80%) and frequently cross-reacted with sera from patients with other cestode infections. The sensitivity of the DD5 test, which uses sheep hydatid fluid, was low (47%) , but its specificity was as high as that of the EITB assay. However, in patients with cysticercosis, cross-reactions were observed in 23% of sera tested. Despite the higher sensitivity found with the EITB assay, 23% (n = 5) of the serum samples that were positive by the DD5 test were not detected by the EITB assay. The EITB assay offers greater sensitivity and specificity than do the ELISA and the DD5 test. The highest proportion of hydatid cases is detected when the EITB and DD5 tests are run simultaneously. Images PMID:1624574

  17. Validity of the Enzyme-linked Immunoelectrotransfer Blot (EITB) for naturally acquired porcine cysticercosis.

    PubMed

    Jayashi, César M; Gonzalez, Armando E; Castillo Neyra, Ricardo; Rodríguez, Silvia; García, Hector H; Lightowlers, Marshall W

    2014-01-17

    The Enzyme-linked Immunoelectrotransfer Blot (EITB) has been used widely as a screening test for Taenia solium cysticercosis in swine. However, the relation between seropositivity and infection in pig populations from endemic areas has not been well defined. The aim of this study is to relate EITB seropositivity with infection and infection burden, analyse the trade-off between sensitivity and specificity with various cut-off points for the EITB assay, and finally describe the serology changes in a cohort of rural pigs raised under natural conditions. A group of 107 pigs that were used as controls during a vaccination field trial in Peru was our study population. The prevalence of porcine cysticercosis determined by necropsy examination was 16.82% (18/107) in these animals. Using EITB reactivity to ≥ 1 band as a cut-off point for the assay, the sensitivity was 88.89% (65.29-98.62, 95% CI) and the specificity was 48.31% (37.59-59.16, 95% CI). Comparing other cut-off points, involving up to as many as 7 reactive bands, a reactivity of ≥ 3 bands provided the best trade-offs in sensitivity and specificity. Using this cut-off point for the assay, the sensitivity was 77.77% (52.36-93.59, 95% CI) and the specificity was 76.40% (66.22-84.76, 95% CI). A significant association was found between cyst counts over 100 cysts and reactivity to ≥ 3 bands in the EITB assay (Fisher's exact test, p<0.05). The results of this study suggest that the use of the EITB assay to study porcine cysticercosis may require setting different cut-offs under field and experimental conditions, and depending upon the objective of the screening process. PMID:24183647

  18. Immunodot blot assay to detect Helicobacter pylori using monoclonal antibodies against the 26 kDa protein.

    PubMed

    Amini Najafabadi, Hossein; Paknejad, Maliheh; Farshad, Shohreh; Mohammadian, Taher; Seyyed Ebrahimi, Shadi Sadat; Amini Najafabadi, Azadeh

    2012-12-01

    Development of a specific immunoassay to detect Helicobacter pylori infection in stool samples requires monoclonal antibody against the specific antigen. The aims of this study were to establish monoclonal antibodies against the 26 kDa protein of H. pylori and develop an immunodot blot for their application to recognize H. pylori infection using stool samples. Mice were immunized intraperitoneally with homogenized gel containing the 26 kDa band of cell surface proteins of H. pylori in sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The monoclonal antibodies were produced using the hybridoma technique. Reactivity of monoclonal antibodies was tested with the purified 26 kDa antigen and cell surface proteins from cultured H. pylori by ELISA. Furthermore reactivity of monoclonal antibodies was tested on negative and positive stool samples for H. pylori and suspensions of several major bacteria in stool by immunodot blot assay. Five stable hybridoma monoclones were obtained. The concordant reactivity of the monoclonal antibodies with H. pylori present in the stool samples, which had been tested previously using an ACON ELISA kit for H. pylori stool antigen testing, and unreactivity with several different major fecal bacteria in immunodot blotting indicates high specificity of the immunodot blot based on the reaction of produced monoclonal antibodies with the H. pylori antigen in stools. The findings indicate that the novel immunodot blot developed based on new monoclonal antibodies for stool antigens would be useful as a noninvasive method of diagnosing H. pylori infection. PMID:23244318

  19. Identification of α1-Antitrypsin as a Potential Candidate for Internal Control for Human Synovial Fluid in Western Blot

    PubMed Central

    Wang, Shaowei; Zhou, Jingming; Wei, Xiaochun; Li, Pengcui; Li, Kai; Wang, Dongming; Wei, Fangyuan; Zhang, Jianzhong; Wei, Lei

    2015-01-01

    Western blot of synovial fluid has been widely used for osteoarthritis (OA) research and diagnosis, but there is no ideal loading control for this purpose. Although β-actin is extensively used as loading control in western blot, it is not suitable for synovial fluid because it is not required in synovial fluid as a cytoskeletal protein. A good loading control for synovial fluid in OA studies should have unchanged content in synovial fluids from normal and OA groups, because synovial fluid protein content can vary with changes in synovial vascular permeability with OA onset. In this study, we explore the potential of using α1-antitripsin (A1AT) as loading control for OA synovial fluid in western blot. A1AT level is elevated in inflammatory conditions such as rheumatoid arthritis (RA). Unlike RA, OA is a non-inflammation disease, which does not induce A1AT. In this study, we identified A1AT as an abundant component of synovial fluid by Mass Spectrometry and confirmed that the level of A1AT is relative constant between human OA and normal synovial fluid by western blot and ELISA. Hence, we proposed that A1AT may be a good loading control for western blot in human OA synovial fluid studies provided that pathological conditions such as RA or A1AT deficiency associated liver or lung diseases are excluded. PMID:26594594

  20. Induction of sexual activity of male creole goats in subtropical northern Mexico using long days and melatonin.

    PubMed

    Delgadillo, J A; Carrillo, E; Morán, J; Duarte, G; Chemineau, P; Malpaux, B

    2001-09-01

    The aim of this study was to determine whether the sexual activity of local male Creole goats in subtropical Mexico can be induced during the non-breeding season by a long-day treatment followed by insertion of two melatonin implants. The experiment was carried out in the Laguna region in the State of Coahuila, Mexico (26 degrees N). Fourteen male goats were allocated to two balanced groups (n = 7 each) according to body and testicular weights. Males were kept together in two separate groups and fed lucerne hay for ad libitum intake and 300 g of commercial concentrate and had free access to water and mineral blocks. The control group remained in open sheds under natural photoperiod and ambient temperature conditions. The experimental group was placed in a light-proof building and exposed to 2.5 mo of long days (16 h of light/d) from November 1 to January 15. On January 16, each male received two s.c. melatonin implants and was exposed to natural photoperiodic changes in an open shed. In the control group, testicular weight exhibited seasonal variations; the highest value occurred on May 30 (146 +/- 10 g). Treated males reached maximum testicular weight earlier (March 15; 147 +/- 11 g), and sperm quality from January to March was higher than that observed in the control group (P < 0.05). Treatment caused an increase in LH pulse frequency (2.0 +/- 0.5 vs 0.3 +/- 0.2 pulse/8 h in February, 4.6 +/- 1.1 vs 0.1 +/- 0.1 pulse/8 h in March; experimental vs control group, respectively). In the control group, plasma testosterone remained low until mid-June and increased thereafter to remain elevated until the end of the study. In the experimental group, elevated plasma testosterone was observed from February to April and from July to November. Treating male goats in subtropical latitudes with artificial long days and melatonin can induce an intense sexual activity during the natural nonbreeding season. PMID:11583410

  1. New insights into fault activation and stress transfer between en echelon thrusts: The 2012 Emilia, Northern Italy, earthquake sequence

    NASA Astrophysics Data System (ADS)

    Cheloni, D.; Giuliani, R.; D'Agostino, N.; Mattone, M.; Bonano, M.; Fornaro, G.; Lanari, R.; Reale, D.; Atzori, S.

    2016-06-01

    Here we present the results of the inversion of a new geodetic data set covering the 2012 Emilia seismic sequence and the following 1 year of postseismic deformation. Modeling of the geodetic data together with the use of a catalog of 3-D relocated aftershocks allows us to constrain the rupture geometries and the coseismic and postseismic slip distributions for the two main events (Mw 6.1 and 6.0) of the sequence and to explore how these thrust events have interacted with each other. Dislocation modeling reveals that the first event ruptured a slip patch located in the center of the Middle Ferrara thrust with up to 1 m of reverse slip. The modeling of the second event, located about 15 km to the southwest, indicates a main patch with up to 60 cm of slip initiated in the deeper and flatter portion of the Mirandola thrust and progressively propagated postseismically toward the top section of the rupture plane, where most of the aftershocks and afterslip occurred. Our results also indicate that between the two main events, a third thrust segment was activated releasing a pulse of aseismic slip equivalent to a Mw 5.8 event. Coulomb stress changes suggest that the aseismic event was likely triggered by the preceding main shock and that the aseismic slip event probably brought the second fault closer to failure. Our findings show significant correlations between static stress changes and seismicity and suggest that stress interaction between earthquakes plays a significant role among continental en echelon thrusts.

  2. Lunette dunes and yardangs of the Carson desert, Nevada: Implications for Holocene eolian activity in the northern Great Basin

    SciTech Connect

    Lancaster, N. . Quaternary Sciences Center)

    1993-04-01

    A large complex of lunette dunes consisting of two and locally three ridges up to 40 m high occurs on the northeast margin of the Carson Sink playa. The outer, or north-easterly, ridge consists of a core of fine and coarse and partially cemented by saline clay and silt (Unit 1) with avalanche face cross-beds dipping to the north-east at 25--30[degree], as well as planar sets of wind ripple laminae with dips to both the northeast and west at 2--5[degree]. Overlying this unit on the crest and lee side of the ridge is 2--5 m of mobile poorly sorted, very fine and coarse sand that forms an active avalanche face up to 25 m high on the east side of the ridge (Unit 3). At a number of localities, the indurated core of the larger dune ridge is carved into yardanges, or streamlined small hills with a lemniscate shape that result from wind erosion of homogeneous sediments. The dunes overlie, with an erosional contact, Late Pleistocene saline lacustrine clays of paleolake Lahontan. They represent at least two episodes of mid- to late-Holocene deflation of sediments from the Carson Sink playa. Erosion of the dunes and yardang formation suggests: (1) termination of sediment supply from the playa as a result of reduced sediment supply and runoff from the Carson River, (2) cementation of the dunes by clay and silt accumulation, and (3) modern eolian erosion through flow acceleration on dune windward slopes.

  3. Discovery of an active shallow submarine silicic volcano in the northern Izu-Bonin Arc: volcanic structure and potential hazards of Oomurodashi Volcano (Invited)

    NASA Astrophysics Data System (ADS)

    Tani, K.; Ishizuka, O.; Nichols, A. R.; Hirahara, Y.; Carey, R.; McIntosh, I. M.; Masaki, Y.; Kondo, R.; Miyairi, Y.

    2013-12-01

    Oomurodashi is a bathymetric high located ~20 km south of Izu-Oshima, an active volcanic island of the northern Izu-Bonin Arc. Using the 200 m bathymetric contour to define its summit dimensions, the diameter of Oomurodashi is ~20 km. Oomurodashi has been regarded as inactive, largely because it has a vast flat-topped summit at 100 - 150 meters below sea level (mbsl). During cruise NT07-15 of R/V Natsushima in 2007, we conducted a dive survey in a small crater, Oomuro Hole, located in the center of the flat-topped summit, using the remotely-operated vehicle (ROV) Hyper-Dolphin. The only heat flow measurement conducted on the floor of Oomuro Hole during the dive recorded an extremely high value of 4,200 mW/m2. Furthermore, ROV observations revealed that the southwestern wall of Oomuro Hole consists of fresh rhyolitic lavas. These findings suggest that Oomurodashi is in fact an active silicic submarine volcano. To confirm this hypothesis, we conducted detailed geological and geophysical ROV Hyper-Dolphin (cruise NT12-19). In addition to further ROV surveys, we carried out single-channel seismic (SCS) surveys across Oomurodashi in order to examine the shallow structures beneath the current edifice. The ROV surveys revealed numerous active hydrothermal vents on the floor of Oomuro Hole, at ~200 mbsl, with maximum water temperature measured at the hydrothermal vents reaching 194°C. We also conducted a much more detailed set of heat flow measurements across the floor of Oomuro Hole, detecting very high heat flows of up to 29,000 mW/m2. ROV observations revealed that the area surrounding Oomuro Hole on the flat-topped summit of Oomurodashi is covered by extensive fresh rhyolitic lava and pumice clasts with minimum biogenetic or manganese cover, suggesting recent eruption(s). These findings strongly indicate that Oomurodashi is an active silicic submarine volcano, with recent eruption(s) occurring from Oomuro Hole. Since the summit of Oomurodashi is in shallow water, it

  4. Quaternary migration of active extension revealed by a syn-tectonic alluvial fan shift. A case study in the Northern Apennines of Italy

    NASA Astrophysics Data System (ADS)

    Mirabella, Francesco; Bucci, Francesco; Cardinali, Mauro; Santangelo, Michele; Guzzetti, Fausto

    2016-04-01

    In areas characterized by the progressive migration of active extension through time, shifts in the position of the active depocenter occur. Such shifts through time produces peculiar geomorphological settings that are often characterized by wind gaps, abandoned valleys, streams captures and drainage inversions. These features provide the opportunity to investigate active areas by studying the recent-most geological history of the related nearby basins. We investigate this topic in a tectonically active area in the Northern Apennines of Italy, as indicated by both instrumental and historical seismicity (maximum epicentral intensity I0=VIII) and extension rates in the order of 2.5-2.7 mm/yr. In particular, we study the Montefalco ridge drainage inversion. Here, fluvial sands and imbricated conglomerates deposited in a lower Pleistocene depocenter constituted by an extensional subsiding basin, are presently uplifted more than 200 m above the present day alluvial plain. The Montefalco ridge drainage inversion, at about 400 m a.s.l., separates two valleys, the Gualdo Cattaneo - Bastardo valley to the West (300 m a.s.l.) and the Foligno present-day alluvial plain to the East (200 m a.s.l.). Seismic reflection data show that the maximum thickness of the continental sequence in the Foligno valley is in the order of 500 m. This valley is presently occupied by a 37 km2 alluvial fan produced by the Topino river flowing from NE to SW. To unravel the Quaternary tectonic evolution of the area, we integrate different data sets collected by field mapping, detailed photo-geological data, sediments provenance information, and subsurface data. We interpret the Montefalco ridge as a paleo-Foligno-like alluvial fan representing the evidence of the recent migration of the active extension to the East of around 7 km. Considering an age of deformation of 2.5 My, an extension rate of about 2.8 mm/yr is derived, which corresponds to the present-day geodetic rates. We stress the importance

  5. Chemical correlation of some late Cenozoic tuffs of Northern and Central California by neutron activation analysis of glass and comparison with X-ray fluorescence analysis

    USGS Publications Warehouse

    Sarna-Wojcicki, Andrei M.; Bowman, Harry W.; Russell, Paul C.

    1979-01-01

    Glasses separated from several dacitic and rhyolitic late Cenozoic tuffs of northern and central California were analyzed by neutron activation for more than 43 elemental abundances. Eighteen elements--scandiurn, manganese, iron, zinc, rubidium, cesium, barium, lanthanum, cerium, samarium, europium, terbiurn, dysprosiurn, ytterbiurn, hafniurn, tantalurn, thorium and uranium--were selected as most suitable for purposes of chemical correlation on the basis of their natural variability in silicic tuffs and the precision obtainable in analysis. Stratigraphic relations between tuffs and replicate chemical analyses on individual tuffs make it possib1e to calibrate a quantitative parameter, the similarity coefficient, which indicates the degree of correlation for the tuffs studied. The highest similarity coefficient (0.99) was obtained for analyses of two tuffs (potassium-argon dated at about' 6.0 m.y.) exposed in the Merced(?) and Petaluma Formations of Sonoma County, which represent different paleoenvironments, shallow-water marine and fresh water or brackish marine, respectively. Corre1ation of these formations on the basis of criteria other than tephrochronoloqy would be difficult. Results of neutron activation analysis in general confirm earlier correlations made on the basis of analysis by X-ray fluorescence but also make it possible to resolve small compositional differences between chemically simi1ar tuffs in stratigraphic proximity. The Lawlor Tuff (potassium-argon dated at about 4.0 m.y.) is identified at two new localities: in a core sample obtained from a bore hole east of Suisun Bay, and from the Kettleman Hills of western San Joaquin Valley. This identification permits correlation of the uppermost part of the marine Etchegoin Formation in the San Joaquin Valley with the continental Livermore Gravels of Clark, the Tassajara Formation, and the upper part of the Sonoma Volcanics in the cel1tral Coast Ranges of California. A younger tuff near the top of the

  6. Permafrost vulnerability and active layer thickness increases over the high northern latitudes inferred from satellite remote sensing and process model assessments

    NASA Astrophysics Data System (ADS)

    Park, Hotaek; Kim, Youngwook

    2016-04-01

    Permafrost extent (PE) and active layer thickness (ALT) are important for assessing high northern latitude (HNL) ecological and hydrological processes, and potential land-atmosphere carbon and climate feedbacks. We developed a new approach to infer PE from satellite microwave remote sensing of daily landscape freeze-thaw (FT) status. Our results document, for the first time, the use of satellite microwave FT observations for monitoring permafrost extent and condition. The FT observations define near-surface thermal status used to determine permafrost extent and stability over a 30-year (1980-2009) satellite record. The PE results showed similar performance against independent inventory and process model (CHANGE) estimates, but with larger differences over heterogeneous permafrost subzones. A consistent decline in the ensemble mean of permafrost areas (‑0.33 million km2 decade‑1; p < 0.05) coincides with regional warming (0.4 °C decade‑1; p < 0.01), while more than 40% (9.6 million km2) of permafrost areas are vulnerable to degradation based on the 30-year PE record. ALT estimates determined from satellite (MODIS) and ERA-Interim temperatures, and CHANGE simulations, compared favorably with independent field observations and indicate deepening ALT trends consistent with widespread permafrost degradation under recent climate change. The integration of remote sensing and modeling of permafrost and active layer conditions developed from this study may facilitate regular and effective regional monitoring of these parameters, and expand applications of remote sensing for examining permafrost-related feedbacks and consequences for biogeochemical and hydrological cycling in the Arctic.

  7. Anti-mitotic activity towards sea urchin embryos in extracts from the marine haptophycean Phaeocystis pouchetii (Hariot) Lagerheim collected along the coast of northern Norway.

    PubMed

    Hansen, Espen; Eilertsen, Hans Chr; Ernstsen, Arild; Genevière, Anne-Marie

    2003-06-01

    The marine bloom-forming alga Phaeocystis pouchetii is suspected to produce some toxic compound responsible for reduced growth, fecundity and survival of other marine organisms. Sea urchin early development was used as a model to investigate the degree and nature of toxicity. Colonial cells of P. pouchetii were collected during its spring-bloom along the coast of northern Norway and maintained in culture for a short period of time in order to evaluate the concentration of toxic compounds present inside the cells or excreted to the surrounding seawater medium. Cells were harvested by filtration and toxins were extracted separately from the collected cells and the filtrate using organic solvents. We found that extracts from the filtered seawater at a concentration corresponding to 9.0 x 10(5) cells ml(-1) completely blocked cell divisions in embryos of the sea urchin Sphaerechinus granularis, whereas extracts from intact algal cells were only mildly cytotoxic. When the extracts from seawater culture medium were purified by RP-HPLC, cytotoxic activity towards S. granularis embryos was recovered in three consecutive fractions. Moreover, unfertilised eggs incubated in the active HPLC fractions became unproductive, whereas incubation of sperm gave a reduced fertilisation rate. This anti-proliferative effect was further characterized by immunofluorescence staining of sea urchin embryos. DNA labelling revealed that incubating sea urchin embryos in the purified algal extracts inhibited both pronuclei migration and fusion. Incorporation and detection of the DNA-base analogue 5-bromo-2-deoxyuridine showed that DNA-replication was blocked. Furthermore, staining of alpha-tubulin subunits demonstrated that embryonic tubulin organisation was altered. We conclude that P. pouchetii produce some anti-mitotic compound, and that senescent colonial cells to a great extent excrete this compound to their surroundings. PMID:12782080

  8. Past climate change and recent anthropogenic activities affect genetic structure and population demography of the greater long-tailed hamster in northern China.

    PubMed

    Ye, Junbin; Xiao, Zhenlong; Li, Chuanhai; Wang, Fusheng; Liao, Jicheng; Fu, Jinzhong; Zhang, Zhibin

    2015-09-01

    The genetic diversity and the spatial structure of a species are likely consequences of both past and recent evolutionary processes, but relevant studies are still rare in East Asia where the Pleistocene climate has unique influences. In this study, we examined the impact of past climate change and recent anthropogenic activities on the genetic structure and population size of the greater long-tailed hamster (Tscherskia triton), an agricultural rodent pest species in northern China. DNA sequence data of 2 mitochondrial genes and genotypic data of 11 microsatellite DNA loci from 41 populations (545 individuals) were gathered. Phylogenetic and population genetic analyses, as well as species distribution modeling and coalescent simulations, were conducted to infer its historical and demographic patterns and processes. Two deeply diverged mitochondrial clades were recovered. A small one was restricted to the Shandong Peninsula while the main clade was further divided into 3 geographic clusters by their microsatellite DNA genotypes: Northwest, North-center and Northeast. Divergence dating indicated a Middle-to-Late Pleistocene divergence between the 2 clades. Demographic analysis indicated that all 3 and pooled populations showed consistent long-period expansions during last glacial period; but not during the Holocene, probably due to the impact of climate warming and human disturbances. Conflicting patterns between mtDNA and microsatellite markers imply an anthropogenic impact on North-center populations due to intensified agricultural cultivation in this region. Our study demonstrated that the impact of past glaciation on organisms in East Asia significantly differs from that of Europe and North America, and human activity is an important factor in determining the genetic diversity of a species, as well as its spatial structure. PMID:26202859

  9. A Slot Blot Immunoassay for Quantitative Detection of Plasmodium falciparum Circumsporozoite Protein in Mosquito Midgut Oocyst

    PubMed Central

    Kumar, Sanjai; Zheng, Hong; Deng, Bingbing; Mahajan, Babita; Grabias, Bryan; Kozakai, Yukiko; Morin, Merribeth J.; Locke, Emily; Birkett, Ashley; Miura, Kazutoyo; Long, Carole

    2014-01-01

    There is still a need for sensitive and reproducible immunoassays for quantitative detection of malarial antigens in preclinical and clinical phases of vaccine development and in epidemiology and surveillance studies, particularly in the vector host. Here we report the results of sensitivity and reproducibility studies for a research-grade, quantitative enhanced chemiluminescent-based slot blot assay (ECL-SB) for detection of both recombinant Plasmodium falciparum circumsporozoite protein (rPfCSP) and native PfCSP from Oocysts (Pf Oocyst) developing in the midguts of Anopheles stephensi mosquitoes. The ECL-SB detects as little as 1.25 pg of rPfCSP (linear range of quantitation 2.5–20 pg; R2 = 0.9505). We also find the earliest detectable expression of native PfCSP in Pf Oocyst by ECL-SB occurs on day 7 post feeding with infected blood meal. The ECL-SB was able to detect approximately as few as 0.5 day 8 Pf Oocysts (linear quantitation range 1–4, R2 = 0.9795) and determined that one Pf Oocyst expressed approximately 2.0 pg (0.5–3 pg) of native PfCSP, suggesting a similar range of detection for recombinant and native forms of Pf CSP. The ECL-SB is highly reproducible; the Coefficient of Variation (CV) for inter-assay variability for rPf CSP and native PfCSP were 1.74% and 1.32%, respectively. The CVs for intra-assay variability performed on three days for rPf CSP were 2.41%, 0.82% and 2% and for native Pf CSP 1.52%, 0.57%, and 1.86%, respectively. In addition, the ECL-SB was comparable to microscopy in determining the P. falciparum prevalence in mosquito populations that distinctly contained either high and low midgut Pf Oocyst burden. In whole mosquito samples, estimations of positivity for P. falciparum in the high and low burden groups were 83.3% and 23.3% by ECL-SB and 85.7% and 27.6% by microscopy. Based on its performance characteristics, ECL-SB could be valuable in vaccine development and to measure the parasite prevalence in mosquitoes and

  10. Exposure of northern leopard frogs in the Green Bay ecosystem to polychlorinated biphenyls, polychlorinated dibenzo-p-dioxins, and polychlorinated dibenzofurans is measured by direct chemistry but not hepatic ethoxyresorufin-O-deethylase activity

    SciTech Connect

    Huang, Y.W.; Karasov, W.H.; Patnode, K.A.; Jefcoate, C.R.

    1999-10-01

    The authors measured concentrations of polychlorinated biphenyls (PCBs), polychlorinated dibenzo-p-dioxins (PCDDs), and polychlorinated dibenzofurans (PCDFs) in northern leopard frogs collected from the Green Bay ecosystem and explored the catalytic activity of hepatic cytochrome P450-associated monooxygenase (P450 enzyme) as a biomarker for exposure to aryl hydrocarbon receptor (AhR) agonists. The two hypotheses tested were PCH concentrations in northern leopard frogs would be positively correlated with sediment polychlorinated hydrocarbon (PCH) levels in wetland habitats along a contamination gradient and hepatic ethoxyresorufin-O-deethylase (EROD) activity of northern leopard frogs, which is presumably mediated by aryl hydrocarbon receptor (AhR), would be positively correlated with PCH concentrations in frog carcasses from different collection sites. In 1994 and 1995, frogs from seven sites along the lower Fox River and Green Bay, USA, were assayed for hepatic EROD activities and whole carcass concentrations of PCBs, PCDDs, and PCDFs. Tissue total PCB concentrations ranging from 3 to 154 ng/g were significantly correlated with sediment PCB levels. Only one PCDD and two PCDFs at concentrations of 6 to 8 pg/g were found in the frogs collected with frog body weight and was similar among sites except for Peter's Marsh. No significant correlation was found between EROD activity and carcass PCB concentration. This result was consistent with the fact that the frogs collected from the Green Bay ecosystem had relatively low PCB concentrations compared with what was required for induction in the laboratory.

  11. Enrichment of PrPSc in Formalin Fixed Paraffin Embedded Tissues Prior to Analysis by Western Blot

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Diagnosis of prion disease is primarily through immunodetection of the infectious agent. Typically, 2 distinct procedures are recommended for a definitive diagnosis with immunohistochemistry and Western blot providing the most information as to the specific isolate in question. In the past these app...

  12. Identification of species in tribe Brassiceae by dot-blot hybridization using species-specific ITS1 probes.

    PubMed

    Tonosaki, K; Nishio, Takeshi

    2010-10-01

    Simple, reliable methods for identification of species are required for management of many species and lines in a plant gene bank. Species-specific probes were designed from published sequences of the ITS1 region in rDNA of 16 species in Brassica and its related genera, and used as probes for dot-blot hybridization with plant genomic DNA. All the probes detected species-specific signals at dot-blots of genomic DNAs of the 16 species in Brassica, Diplotaxis, Eruca, and Raphanus. Signals of the Brassica digenomic species in the U's triangle, i.e., B. napus, B. juncea, and B. carinata, were detected by the probes of their parental monogenomic species, i.e., B. rapa, B. nigra, and B. oleracea. The probe for B. oleracea showed signals of B. balearica, B. cretica, B. incana, B. insularis, and B. macrocarpa, which have the C genome as B. oleracea. Eruca vesicaria DNA was detected by the probe for E. sativa, which has been classified as a subspecies of E. vescaria. DNA of leaf tissue extracted by an alkaline solution and seed DNA prepared by the NaI method can be used directly for dot-blotting. Misidentification of species was revealed in 20 accessions in the Tohoku University Brassica Seed Bank. These results indicate dot-blot hybridization to be a simple and efficient technique for identification of plant species in a gene bank. PMID:20683723

  13. History of human activity in last 800 years reconstructed from combined archive data and high-resolution analyses of varved lake sediments from Lake Czechowskie, Northern Poland

    NASA Astrophysics Data System (ADS)

    Słowiński, Michał; Tyszkowski, Sebastian; Ott, Florian; Obremska, Milena; Kaczmarek, Halina; Theuerkauf, Martin; Wulf, Sabine; Brauer, Achim

    2016-04-01

    The aim of the study was to reconstruct human and landscape development in the Tuchola Pinewoods (Northern Poland) during the last 800 years. We apply an approach that combines historic maps and documents with pollen data. Pollen data were obtained from varved lake sediments at a resolution of 5 years. The chronology of the sediment record is based on varve counting, AMS 14C dating, 137Cs activity concentration measurements and tephrochronology (Askja AD 1875). We applied the REVEALS model to translate pollen percentage data into regional plant abundances. The interpretation of the pollen record is furthermore based on pollen accumulation rate data. The pollen record and historic documents show similar trends in vegetation development. During the first phase (AD 1200-1412), the Lake Czechowskie area was still largely forested with Quercus, Carpinus and Pinus forests. Vegetation was more open during the second phase (AD 1412-1776), and reached maximum openness during the third phase (AD 1776-1905). Furthermore, intensified forest management led to a transformation from mixed to pine dominated forests during this period. Since the early 20th century, the forest cover increased again with dominance of the Scots pine in the stand. While pollen and historic data show similar trends, they differ substantially in the degree of openness during the four phases with pollen data commonly suggesting more open conditions. We discuss potential causes for this discrepancy, which include unsuitable parameters settings in REVEALS and unknown changes in forest structure. Using pollen accumulation data as a third proxy record we aim to identify the most probable causes. Finally, we discuss the observed vegetation change in relation the socio-economic development of the area. This study is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analysis - ICLEA- of the Helmholtz Association and National Science Centre, Poland (grant No. 2011/01/B/ST10

  14. Interannual variation of rare earth element abundances in corals from northern coast of the South China Sea and its relation with sea-level change and human activities

    USGS Publications Warehouse

    Liu, Yajing; Peng, Z.; Wei, G.; Chen, T.; Sun, W.; He, J.; Liu, Gaisheng; Chou, C.-L.; Shen, C.-C.

    2011-01-01

    Here we present interannual rare earth element (REE) records spanning the last two decades of the 20th century in two living Porites corals, collected from Longwan Bay, close to the estuarine zones off Wanquan River of Hainan Island and Hong Kong off the Pearl River Delta of Guangdong Province in the northern South China Sea. The results show that both coral REE contents (0.5-40 ng g-1 in Longwan Bay and 2-250 ng g-1 in Hong Kong for La-Lu) are characterized with a declining trend, which are significantly negative correlated with regional sea-level rise (9.4 mm a-1 from 1981 to 1996 in Longwan Bay, 13.7 mm a-1 from 1991 to 2001 in Hong Kong). The REE features are proposed to be resulted from seawater intrusion into the estuaries in response to contemporary sea-level rise. However, the tendency for the coral Er/Nd time series at Hong Kong site is absent and there is no significant relation between Er/Nd and total REEs as found for the coral at Longwan Bay site. The observations are likely attributed to changes of the water discharge and sediment load of Pearl River, which have been significantly affected by intense human activities, such as the construction of dams/reservoirs and riverbed sediment mining, in past decades. The riverine sediment load/discharge ratio of the Pearl River decreased sharply with a rate of 0.02 kg m-3 a-1, which could make significant contribution to the declining trend of coral REE. We propose that coastal corals in Longwan Bay and similar unexplored sites with little influences of river discharge and anthropogenic disruption are ideal candidates to investigate the influence of sea-level change on seawater/coral REE. ?? 2010 Elsevier Ltd.

  15. Interferon activity of mitogen-induced chicken splenic lymphocytes which do not express interferon mRNA.

    PubMed

    Agarwal, S K; Cloud, S S; Burnside, J

    1996-10-01

    Interferon activity was measured in media from virally infected chicken embryo fibroblasts and Concanavalin A-stimulated splenic lymphocytes using a viral inhibition assay. Both cell types produce interferon activity. A cDNA probe corresponding to a chicken interferon mRNA was used to probe Northern blots of RNA prepared from both cells. A single hybridizing species of 900 bases was detected in virally infected fibroblast RNA, but no hybridizing species was detected in the splenic lymphocytes. These results suggest that the interferon activity produced by lymphocytes is of different molecular origin than the corresponding activity produced by virally infected fibroblasts. PMID:8969047

  16. Developing a Small-Scale De-Fluoridation Filter for Use in Rural Northern Ghana with Activated Alumina As the Sorbent

    NASA Astrophysics Data System (ADS)

    Craig, L.; Stillings, L. L.

    2014-12-01

    In northern Ghana, groundwater is the main source of household water and is generally considered safe to drink. However in some areas it contains fluoride (F-) concentrations above the 1.5 ppm limit recommended by the World Health Organization, putting the users at risk of fluorosis. The study area in the Upper East Region of Ghana has pockets of groundwater F- up to 4.6 ppm and, as a result, also has a high percentage of residents with dental fluorosis. They have no alternative water source and, because of poverty and limited access to technology, lack the capacity to set up advanced treatment systems. One proposed solution is to attach F- adsorption filters to the wells, since adsorption is considered a simple and cost effective approach for treating high F-drinking water. This study evaluates activated alumina as a sorbent for use in de-fluoridation filters in the study area. We evaluated the long-term adsorption capacity of activated alumina, and changes in F- adsorption rate and capacity with grain size. We measured differences in positive surface charge (C m-2) via slow acid titration, as well as F- loading with varied prior hydration time. Results from this research show no notable change in F- adsorption or positive surface charge when the activated alumina surface was pre-equilibrated in distilled water from 24 hours to 30 weeks. The results of F- loading show a maximum of ~3.4 mg F- sorbed per gm activated alumina (initial pH ~6.9, initial F- 1 to 60 ppm, 20 hr reaction time). The pH dependent surface charge is ~0.14 C m-2 at pH of ~4.4 and is zero at pH ~8.6. F- loading experiments were conducted with grain size 0.125 to 0.250 mm and 0.5 to 1.0 mm to evaluate changes in F- adsorption rate (initial pH ~6.9, initial F- 10 ppm) and F- loading (initial pH ~6.9, initial F- 1 to 60 ppm, 20 hr reaction time). The F- loading did not change with grain size. However time to equilibrium increased dramatically with a decrease in grain size - after one hour of

  17. Coseismic uplift and fault model of marine active faults in 1729 AD revealed by fossilized intertidal sessile organisms along the northern coast of the Noto Peninsula, central Japan

    NASA Astrophysics Data System (ADS)

    Hamada, M.; Hiramatsu, Y.; Oda, M.; Yamaguchi, H.

    2015-12-01

    The Noto Peninsula is located in the backarc region of southwest Japan and is characterized by geomorphologic features formed by active tectonics and glacial eustasy through the Quaternary. Pleistocene marine terraces along the northern coast of the Noto Peninsula indicate uplift in the coastal area through the late Quaternary (Ota and Hirakawa, 1979). Recently, an active fault zone on the seafloor off the coast was found and was divided into four segments, Monzen-oki, Saruyama-oki, Wajima-oki, and Suzu-oki, from west to east (Inoue and Okamura, 2010). We investigated vertical displacement along the coast using intertidal sessile organisms at nine sites on the rocky coast. We measured the height of fossilized Pomatoleios kraussii by GPS surveying together with a sea-level change curve, and dated them using the AMS 14C method. The vertical displacements and dates at the sites implied that coastal uplift occurred along 20 km of coastline, corresponding to the Wajima-oki segment zone, and most likely between 1600 and 1800 AD. This is coincident with seismic damage in this area in 1729 AD recorded in historical documents. We constructed a fault model with three rectangular faults in a homogeneous elastic half-space and estimated the optimal net slip and rake by a non-linear inversion method (Matsu'ura and Hasegawa, 1987). The best fit to the estimated vertical displacements is provided by a net slip of 1.8 m with a rake of 90° for the western fault plane and a net slip of 0.6 m with a rake of 90° for the center and the eastern fault planes. The moment magnitude (Mw) calculated from these parameters with a rigidity of 30 GPa is 6.6. We compared the elevation distribution of the former shorelines based on coastal terraces and the 1729 earthquake uplifts. Assuming that the coastal uplift is caused by the cumulative crustal deformation produced by the same size event as the 1729 earthquake, the average recurrence interval of the events is estimated to be 1700 years.

  18. Large-scale thrusting along the northern margin of the Tibetan Plateau and the southwest Tarim basin: 230 km long active Hotian thrust sheet

    NASA Astrophysics Data System (ADS)

    Suppe, J.; Wang, X.; He, D.; Liang, H.

    2015-12-01

    We present the geometry, kinematics and mechanics of large-scale active thrusting in the western Kunlunshan and southwest Tarim basin, which accounts for ~130-165km total shortening of Tarim crust at the northern margin of Tibet. The great frontal structure is the ~230km long bedding-parallel Hotian thrust sheet, which is perhaps the longest active intact thrust sheet in the world, composed of flat-lying strata of the Tarim basin sliding northward on a regional gypsum detachment at the base of the Cenozoic sequence. The toe of the Hotian thrust ramps to the surface two thirds of the way across the Tarim basin, forming the Selibuya-Mazartag hills in the Taklamakan sand desert. At the southern edge of the Tarim basin in the Kunlunshan foothills, a set of high-amplitude anticlines are growing by complex break-forward ramping and wedging in the Hotian thrust sheet as it steps up to the Cenozoic gypsum detachment from a regional Cambrian evaporate detachment that extends under Tibet. More interior structures such as the Tiklik thrust bring older strata and Proterozoic basement to the surface, together with their Cenozoic Tarim cover in the Buya basin. The Cambrian detachment also extends northward under the Tarim basin with minor hanging-wall deformation that locally warps the overlying Hotian thrust sheet, producing a complete syntectonic record in seismically imaged growth strata of its northward motion over these warps. Seismic profiles in the southwest Tarim foothill belt also reveal widespread growth strata that record much of the structural history beginning in the early Pliocene Atushi Formation. Ages of seismic reflectors are calibrated to a surface magnetostratigraphic sequence (Zheng et al., 2000). The beginning of thrusting and folding in the southwest Tarim basin north of the Tiklik thrust is dated at 3.6Ma with shortening >25km and a progressive northward propagation toward the Selibuya-Mazartag hills. The overall shortening rate is ~10 mm/yr. The gypsum

  19. Evaluation of two sets of immunohistochemical and Western blot confirmatory methods in the detection of typical and atypical BSE cases

    PubMed Central

    2011-01-01

    Background Three distinct forms of bovine spongiform encephalopathy (BSE), defined as classical (C-), low (L-) or high (H-) type, have been detected through ongoing active and passive surveillance systems for the disease. The aim of the present study was to compare the ability of two sets of immunohistochemical (IHC) and Western blot (WB) BSE confirmatory protocols to detect C- and atypical (L- and H-type) BSE forms. Obex samples from cases of United States and Italian C-type BSE, a U.S. H-type and an Italian L-type BSE case were tested in parallel using the two IHC sets and WB methods. Results The two IHC techniques proved equivalent in identifying and differentiating between C-type, L-type and H-type BSE. The IHC protocols appeared consistent in the identification of PrPSc distribution and deposition patterns in relation to the BSE type examined. Both IHC methods evidenced three distinct PrPSc phenotypes for each type of BSE: prevailing granular and linear tracts pattern in the C-type; intraglial and intraneuronal deposits in the H-type; plaques in the L-type. Also, the two techniques gave comparable results for PrPSc staining intensity on the C- and L-type BSE samples, whereas a higher amount of intraglial and intraneuronal PrPSc deposition on the H-type BSE case was revealed by the method based on a stronger demasking step. Both WB methods were consistent in identifying classical and atypical BSE forms and in differentiating the specific PrPSc molecular weight and glycoform ratios of each form. Conclusions The study showed that the IHC and WB BSE confirmatory methods were equally able to recognize C-, L- and H-type BSE forms and to discriminate between their different immunohistochemical and molecular phenotypes. Of note is that for the first time one of the two sets of BSE confirmatory protocols proved effective in identifying the L-type BSE form. This finding helps to validate the suitability of the BSE confirmatory tests for BSE surveillance currently in

  20. Volcanic-ash hazard to aviation during the 2003-2004 eruptive activity of Anatahan volcano, Commonwealth of the Northern Mariana Islands

    USGS Publications Warehouse

    Guffanti, M.; Ewert, J.W.; Gallina, G.M.; Bluth, G.J.S.; Swanson, G.L.

    2005-01-01

    Within the Commonwealth of the Northern Mariana Islands (CNMI), Anatahan is one of nine active subaerial volcanoes that pose hazards to major air-traffic routes from airborne volcanic ash. The 2003-2004 eruptive activity of Anatahan volcano affected the region's aviation operations for 3 days in May 2003. On the first day of the eruption (10 May 2003), two international flights from Saipan to Japan were cancelled, and several flights implemented ash-avoidance procedures. On 13 May 2003, a high-altitude flight through volcanic gas was reported, with no perceptible damage to the aircraft. TOMS and MODIS analysis of satellite data strongly suggests that no significant ash and only minor amounts of SO2 were involved in the incident, consistent with crew observations. On 23 May 2003, airport operations were disrupted when tropical-cyclone winds dispersed ash to the south, dusting Saipan with light ashfall and causing flight cancellations there and at Guam 320 km south of the volcano. Operational (near-real-time) monitoring of ash clouds produced by Anatahan has been conducted since the first day of the eruption on 10 May 2003 by the Washington Volcanic Ash Advisory Center (VAAC). The VAAC was among the first groups outside of the immediate area of the volcano to detect and report on the unexpected eruption of Anatahan. After being contacted about an unusual cloud by National Weather Service forecasters in Guam at 1235 UTC on 10 May 2003, the VAAC analyzed GOES 9 images, confirming Anatahan as the likely source of an ash cloud and estimating that the eruption began at about 0730 UTC. The VAAC issued its first Volcanic Ash Advisory for Anatahan at 1300 UTC on 10 May 2003 more than 5 h after the start of the eruption, the delay reflecting the difficulty of detecting and confirming a surprise eruption at a remote volcano with no in situ real-time geophysical monitoring. The initial eruption plume reached 10.7-13.4 km (35,000-44,000 ft), well into jet cruise altitudes

  1. Volcanic-ash hazard to aviation during the 2003 2004 eruptive activity of Anatahan volcano, Commonwealth of the Northern Mariana Islands

    NASA Astrophysics Data System (ADS)

    Guffanti, Marianne; Ewert, John W.; Gallina, Gregory M.; Bluth, Gregg J. S.; Swanson, Grace L.

    2005-08-01

    Within the Commonwealth of the Northern Mariana Islands (CNMI), Anatahan is one of nine active subaerial volcanoes that pose hazards to major air-traffic routes from airborne volcanic ash. The 2003-2004 eruptive activity of Anatahan volcano affected the region's aviation operations for 3 days in May 2003. On the first day of the eruption (10 May 2003), two international flights from Saipan to Japan were cancelled, and several flights implemented ash-avoidance procedures. On 13 May 2003, a high-altitude flight through volcanic gas was reported, with no perceptible damage to the aircraft. TOMS and MODIS analysis of satellite data strongly suggests that no significant ash and only minor amounts of SO 2 were involved in the incident, consistent with crew observations. On 23 May 2003, airport operations were disrupted when tropical-cyclone winds dispersed ash to the south, dusting Saipan with light ashfall and causing flight cancellations there and at Guam 320 km south of the volcano. Operational (near-real-time) monitoring of ash clouds produced by Anatahan has been conducted since the first day of the eruption on 10 May 2003 by the Washington Volcanic Ash Advisory Center (VAAC). The VAAC was among the first groups outside of the immediate area of the volcano to detect and report on the unexpected eruption of Anatahan. After being contacted about an unusual cloud by National Weather Service forecasters in Guam at 1235 UTC on 10 May 2003, the VAAC analyzed GOES 9 images, confirming Anatahan as the likely source of an ash cloud and estimating that the eruption began at about 0730 UTC. The VAAC issued its first Volcanic Ash Advisory for Anatahan at 1300 UTC on 10 May 2003 more than 5 h after the start of the eruption, the delay reflecting the difficulty of detecting and confirming a surprise eruption at a remote volcano with no in situ real-time geophysical monitoring. The initial eruption plume reached 10.7-13.4 km (35,000-44,000 ft), well into jet cruise altitudes

  2. Western blot (immunoblot) assay of small, round-structured virus associated with an acute gastroenteritis outbreak in Tokyo.

    PubMed Central

    Hayashi, Y; Ando, T; Utagawa, E; Sekine, S; Okada, S; Yabuuchi, K; Miki, T; Ohashi, M

    1989-01-01

    Small, round-structured virus (SRSV) was detected in a stool specimen of a patient during an acute gastroenteritis outbreak in Tokyo and was tentatively named SRSV-9. SRSV-9 was purified by sucrose velocity gradient centrifugation after CsCl density gradient centrifugation. The buoyant density of SRSV-9 appeared to be 1.36 g/ml in CsCl. A Western blot (immunoblot) assay using the biotin-avidin system revealed that SRSV-9 was antigenically related to the Hawaii agent but distinct from the Norwalk agent and contained a single major structural protein with a molecular size of 63.0 +/- 0.6 kilodaltons. The prevalence of SRSV-9 infection in Tokyo was surveyed by the Western blot antibody assay by using a crude virus preparation as the antigen. Seroconversion was observed in 56.5% of the patients involved in the outbreaks from which SRSV was detected by electron microscopy. Images PMID:2504773

  3. Densitometric analysis of Western blot (immunoblot) assays for human immunodeficiency virus antibodies and correlation with clinical status.

    PubMed Central

    Schmidt, G; Amiraian, K; Frey, H; Stevens, R W; Berns, D S

    1987-01-01

    Western blot assays for antibodies directed against components of human immunodeficiency virus (HIV) associated with acquired immunodeficiency syndrome (AIDS) were examined with a densitometer and integrator. Antibody responses to seven HIV proteins were determined from the areas under the peaks of bands on blots from 430 seropositive individuals. Antibody responses corresponded qualitatively and quantitatively with clinical status. The Western blot assays examined were done on single specimens from individuals in one of four clinical states: asymptomatic with no risk factor identified, asymptomatic with risk factor(s) identified, AIDS-related complex, and AIDS. The ratios of gp41 antibody to p24 antibody and of gp41 antibody to total HIV antibodies increased, and the number of total HIV antibodies decreased progressively in these populations. Parameters were assigned to characterize the typical response found in AIDS: gp41 antibody/p24 antibody ratio, greater than or equal to 2.0; gp41 antibody/total HIV antibodies ratio, greater than or equal to 0.30; and number of total HIV antibodies, less than or equal to 25.0 signal units. Parameter match increased with progression of clinical status. These parameters were applied in a brief follow-up study of 34 HIV-infected asymptomatic individuals who developed AIDS-related complex or AIDS. Initial specimens showed a stronger correlation than our population data base had predicted, suggesting that the parameters have prognostic value. Densitometric analysis of antibody responses on Western blot assays of single or serial specimens should prove useful to physicians in staging and monitoring HIV-infected individuals and in predicting which individuals will progress to AIDS. Images PMID:2444624

  4. A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting.

    PubMed

    Wiśniewski, Jacek R; Mann, Matthias

    2016-07-01

    Proteomics and other protein-based analysis methods such as Western blotting all face the challenge of discriminating changes in the levels of proteins of interest from inadvertent changes in the amount loaded for analysis. Mass-spectrometry-based proteomics can now estimate the relative and absolute amounts of thousands of proteins across diverse biological systems. We reasoned that this new technology could prove useful for selection of very stably expressed proteins that could serve as better loading controls than those traditionally employed. Large-scale proteomic analyses of SDS lysates of cultured cells and tissues revealed deglycase DJ-1 as the protein with the lowest variability in abundance among different cell types in human, mouse, and amphibian cells. The protein constitutes 0.069 ± 0.017% of total cellular protein and occurs at a specific concentration of 34.6 ± 8.7 pmol/mg of total protein. Since DJ-1 is ubiquitous and therefore easily detectable with several peptides, it can be helpful in normalization of proteomic data sets. In addition, DJ-1 appears to be an advantageous loading control for Western blot that is superior to those used commonly used, allowing comparisons between tissues and cells originating from evolutionarily distant vertebrate species. Notably, this is not possible by the detection and quantitation of housekeeping proteins, which are often used in the Western blot technique. The approach introduced here can be applied to select the most appropriate loading controls for MS-based proteomics or Western blotting in any biological system. PMID:27297043

  5. Cross antigenicity of immunodominant polypeptides of somatic antigen of Oesophagostomum columbianum with other helminths by western blotting

    PubMed Central

    Dalal, Sunita; Prasad, Arvind; Nasir, Abdul; Saini, Vijesh Kumar

    2015-01-01

    Aim: Oesophagostomum columbianum in small ruminants in India is found as mixed infection commonly in sheep and goat. Haemonchus contortus, an abomasal nematode is found as concurrent infection with it. Eggs of Haemonchus and O. columbianum cannot be easily distinguished. Diagnosis of O. columbianum may only be possible if a non-cross antigenic polypeptide was available for immunodiagnosis. Materials and Methods: Somatic antigen (SoAg) of O. columbianum was fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and immunodominant polypeptides were identified by western blotting with homologous hyperimmune serum (HIS) and experimental sera of sheep or goat infected with other helminths. Results: SoAg of O. columbianum was immunoaffinity purified. Sharp polypeptide bands of 130, 72 and 68 KDa were observed along with several faint bands of lower molecular weight. Western blot of purified SoAg of O. columbianum with homologous HIS showed reaction with all the protein bands of 17, 28, 30, 32, 35, 38, 50, 68, 100, 130, 150, and 170 kDa. For identification of non-cross antigenic polypeptide, immunoaffinity purified SoAg of O. columbianum was reacted to heterologous HIS against H. contortus, Paramphistomum epiclitum, and Fasciola gigantica in western blotting utilizing completely dry method (i-blot). Among high molecular weight polypeptides 100 and 150 kDa were non-cross antigenic and among low molecular weight except 50 kDa polypeptide, 17, 30, 32, 35, and 38 kDa of O. columbianum were not cross antigenic with other helminths. Conclusions: Hence, polypeptides of 17, 30, 32, 35 and 38 kDa as well as 100 and 150 kDa polypeptides of O. columbianum may be exploited for immunodiagnosis of the infection in sheep and goat with extensive studies on cross antigenicity. PMID:27047030

  6. Use of Phaseolus vulgaris leukoagglutinating lectin in histochemical and blotting techniques: a comparison of digoxigenin- and biotin-labelled lectins.

    PubMed

    Li, W P; Zuber, C; Roth, J

    1993-11-01

    An increase in the number of beta 1,6 branches of the trimannosyl core of asparagine-linked oligosaccharides has been shown to be directly correlated with the metastatic potential of cultured tumour cells. The Phaseolus vulgaris leukoagglutinating lectin (PHA-L) binds to beta 1,6 branches of tri- and tetra-antennary oligosaccharides. We have applied digoxigenin- and biotin-conjugated PHA-L to establish a non-radioactive detection system for beta 1,6 branches, which can be used in lectin blotting as well as light and electron microscopic cytochemistry. For this purpose the HCT116 human colon carcinoma cell line and colon carcinoma tissue were investigated. Digoxigenin-conjugated PHA-L in conjunction with alkaline phosphatase-conjugated anti-digoxigenin antibodies was superior to biotin-conjugated PHA-L in lectin blotting with respect to sensitivity and specificity. Similarly, the digoxigenin conjugated PHA-L in conjunction with gold-labelled anti-digoxigenin antibodies resulted in more intense specific staining and lower background compared to biotin-conjugated PHA-L visualized with a streptavidin immunogold complex. The specificity of lectin binding in blotting and cytochemical studies was demonstrated by the absence of staining when the lectin was omitted or preabsorbed with glycoprotein, and following pretreatment of the cellular homogenates or tissue sections by N-glycosidase F. Our results demonstrate that digoxigenin-conjugated PHA-L provides high sensitivity and specificity for histochemical and blotting techniques and is amenable for quantification. The technique should have applications in tumour research. PMID:7508428

  7. Western blot can distinguish natural and acquired antibodies to Mycoplasma agassizii in the desert tortoise (Gopherus agassizii).

    PubMed

    Hunter, Kenneth W; Dupré, Sally A; Sharp, Tiffanny; Sandmeier, Franziska C; Tracy, C Richard

    2008-12-01

    Mycoplasma agassizi has been identified as a cause of upper respiratory tract disease (URTD) in the threatened Mojave population of the desert tortoise (Gopherus agassizii), and anti-M. agassizii antibodies have been found by ELISA in as many as 15% of these animals across their geographic range. Here we report that a cohort of 16 egg-reared desert tortoises never exposed to M. agassizii had ELISA antibody titers to this organism that overlapped with titers obtained from some M. agassizii-infected tortoises. These natural antibodies were predominantly of the IgM class. Western blots of plasma from these non-infected tortoises produced a characteristic banding pattern against M. agassizii antigens. A group of 38 wild-caught desert tortoises was tested by ELISA, and although some of these tortoises had antibody titers significantly higher than the non-infected tortoises, there was considerable overlap at the lower titer levels. However, Western blot analysis revealed distinct banding patterns that could readily distinguish between the non-infected tortoises and tortoises with acquired antibodies, regardless of ELISA antibody titers. We conclude that desert tortoises have natural antibodies to M. agassizii that can compromise the determination of infection status by ELISA. However, the Western blot technique can distinguish between natural and acquired antibody patterns and can be used to confirm the diagnosis of M. agassizii infections in the desert tortoise. PMID:18708096

  8. Affects of wastewater discharge from mining on soil heavy metal pollution and enzyme activities in northern Hunan province, Central South China

    NASA Astrophysics Data System (ADS)

    Jiang, Ying; Hu, Xue-Feng; Shu, Ying; Yan, Xiao-Juan; Luo, Fan

    2013-04-01

    Hunan province, Central South China, is rich in mineral resources and also a well-known nonferrous metal base in China. Mining and ore processing there, however, are mostly conducted in indigenous methods, and thus causing heavy metal pollution of abundant farmland. Situated in northern Hunan province, Y county has antimony, manganese, vanadium, and pyrite mines, but still belongs to a region of rice cultivation, of which, paddy fields make up 84.5% of the total farmland. Our investigations found that irrigation water is threatened by the release of mining wastewater in the county. For example, a stream used for irrigation turns dark-red after long-term receiving wastewater discharged from a pyrite company at HS Town of the county. Concentrations of Cu, Zn, Cd, Fe and Mn in the stream water reach 0.03 mg kg-1, 2.14 mg kg-1, 0.02 mg kg-1, 96.0 mg kg-1 and 11.5 mg kg-1, respectively; these in the paddy soils nearby are 67.3 mg kg-1, 297 mg kg-1, 4.0 mg kg-1, 33.1 mg g-1 and 463 mg kg-1 on average, respectively, with a maximum of Cd reaching 16.8 mg kg-1. Microbial biomass and activities are significantly reduced by metal toxicity in the soils. The counts of fungal, actinomycin and bacterial colonies in the polluted soils are 8.8×103 /g (Fresh soil), 4.9×105 /g (Fresh soil) and 6.4×105 /g (Fresh soil), respectively, which are only 4.68%, 10.3% and 20.9% of these in non-polluted soils in Y county, respectively. Likewise, the microbial biomass (MB) - C and MB - N of the polluted soils are only 36.8% and 50.3% of these in the non-polluted, respectively. The activities of dehydrogenase, urease, catalase, acid and neutral phosphatase and sucrase in the polluted soils are only 41.2%, 49.8%, 56.8%, 69.9%, 80.7% and 81.0% of these in the non-polluted, respectively. There are significant negative correlations between Cu, Zn and Cd contents and the activities of dehydrogenase and catalase, suggesting that the two enzymes are the most sensitive to heavy metal toxicity in the

  9. Northern Taurids in the IAU MDC Database

    NASA Astrophysics Data System (ADS)

    Kaňuchová, Z.; Svoreň, J.

    2012-11-01

    The method of indices was used to study the northern branch of the autumn (night) part of the Taurid complex. The procedure based only on mathematical statistics was applied to select the Northern Taurid meteor records from the IAU Meteor Data Center Database. Because we wanted to study especially the structure of the inner part of the Northern Taurids, we were focused on the interval of the higher activity of the stream — from the end of the Perseids activity to the beginning of the Geminids activity. We did not take into account outlying parts of the complex, which is active, according to some authors, until January. 84 orbits of the Northern Taurids were selected. 63 of 84 Northern Taurids orbits (75%) were sorted into 11 associations found in the stream. One of the associations consisting of three orbits was identified as a previously unknown northern branch of τ Arietids shower. We also found an association with orbital characteristics equal to the characteristics of showers δ Psc N and χ Ori N. Meteors in these associations were observed up to three weeks earlier compared to currently cataloged data of the showers. The orientation of the mean orbit of a 5-member association of δ Psc N, different from the general trend, indicates that this stream may not be genetically related to other members of the Taurid complex.

  10. The northern Egyptian continental margin

    NASA Astrophysics Data System (ADS)

    Badawy, Ahmed; Mohamed, Gad; Omar, Khaled; Farid, Walid

    2015-01-01

    Africa displays a variety of continental margin structures, tectonics and sedimentary records. The northern Egyptian continental margin represents the NE portion of the North African passive continental margin. Economically, this region is of great importance as a very rich and productive hydrocarbon zone in Egypt. Moreover, it is characterized by remarkable tectonic setting accompanied by active tectonic processes from the old Tethys to recent Mediterranean. In this article, seismicity of the northern Egyptian continental margin has been re-evaluated for more than 100-years and the source parameters of three recent earthquakes (October 2012, January 2013 and July 2013) have been estimated. Moment tensor inversions of 19th October 2012 and 17th January 2013 earthquakes reveal normal faulting mechanism with strike-slip component having seismic moment of 3.5E16 N m and 4.3E15 N m respectively. The operation of the Egyptian National Seismic Network (ENSN) since the end of 1997 has significantly enhanced the old picture of earthquake activity across northern Egyptian continental margin whereas; the record-ability (annual rate) has changed from 2-events/year to 54-event/year before and after ENSN respectively. The spatial distribution of earthquakes foci indicated that the activity tends to cluster at three zones: Mediterranean Ridge (MR), Nile Cone (NC) and Eratosthenes Seamount (ERS). However, two seismic gaps are reported along Levant Basin (LEV) and Herodotus Basin (HER).

  11. Western blot analysis of BK channel β1‐subunit expression should be interpreted cautiously when using commercially available antibodies

    PubMed Central

    Bhattarai, Yogesh; Fernandes, Roxanne; Kadrofske, Mark M.; Lockwood, Lizbeth R.; Galligan, James J.; Xu, Hui

    2014-01-01

    Abstract Large conductance Ca2+‐activated K+ (BK) channels consist of pore‐forming α‐ and accessory β‐subunits. There are four β‐subunit subtypes (β1–β4), BK β1‐subunit is specific for smooth muscle cells (SMC). Reduced BK β1‐subunit expression is associated with SMC dysfunction in animal models of human disease, because downregulation of BK β1‐subunit reduces channel activity and increases SMC contractility. Several anti‐BK β1‐subunit antibodies are commercially available; however, the specificity of most antibodies has not been tested or confirmed in the tissues from BK β1‐subunit knockout (KO) mice. In this study, we tested the specificity and sensitivity of six commercially available antibodies from five manufacturers. We performed western blot analysis on BK β1‐subunit enriched tissues (mesenteric arteries and colons) and non‐SM tissue (cortex of kidney) from wild‐type (WT) and BK β1‐KO mice. We found that antibodies either detected protein bands of the appropriate molecular weight in tissues from both WT and BK β1‐KO mice or failed to detect protein bands at the appropriate molecular weight in tissues from WT mice, suggesting that these antibodies may lack specificity for the BK β1‐subunit. The absence of BK β1‐subunit mRNA expression in arteries, colons, and kidneys from BK β1‐KO mice was confirmed by RT‐PCR analysis. We conclude that these commercially available antibodies might not be reliable tools for studying BK β1‐subunit expression in murine tissues under the denaturing conditions that we have used. Data obtained using commercially available antibodies should be interpreted cautiously. Our studies underscore the importance of proper negative controls in western blot analyses. PMID:25355855

  12. Denitrification activity of aquifer material from two different sandy aquifers in northern Germany measured by laboratory incubation experiments in relation to influencing sediment parameters

    NASA Astrophysics Data System (ADS)

    Eschenbach, Wolfram; Well, Reinhard; Flessa, Heiner; Duijnisveld, Wilhelmus H. M.; Walther, Wolfgang

    2010-05-01

    In NO3¯ contaminated aquifers containing reduced compounds like organic carbon or sulfides, denitrification is an intense process. Its characterization is of interest because NO3¯ consumption improves water quality and N2O production can cause emission of this greenhouse gas to the atmosphere. Spatial distribution of NO3¯ and N2 produced by denitrification in groundwater (excess N2) reflects the NO3¯ input as well as cumulative denitrification during aquifer passage. The amount and spatial distribution of reduced compounds within denitrifying aquifers is not well known. Recent findings from parallel investigations on in situ denitrification and reactive compounds suggests that single-well 15N tracer tests might be suitable to characterize the stock of reduced compounds in aquifers (Konrad 2008), but an evaluation of this approach has not been realized until now. The overall objective of our studies is to measure the spatial and long-term dynamics of denitrification within two sandy aquifers in northern Germany. This includes measurement of the actually occurring denitrification process in the field by 15N-tracer experiments and incubation experiments with corresponding aquifer material. Beside the comparison of field and laboratory data concerning the denitrification activity, we also want to determine the long-term denitrification potential which is governed by the stock of reactive material within these sediments. Here we present the first results of these long-term incubation experiments to investigate the stock of reactive material present in these sediments and its denitrification activity. In these batch experiments we filled the aquifer material from different depths between two and 68 m below ground in glass bottles, supplemented it with K15NO3 solution, sealed the bottles airtight with rubber septa and flushed the headspace with pure N2. Afterward the bottles where stored in the dark by 10° C to obtain aquifer like conditions. The labeled

  13. Robot Printing of Reverse Dot Blot Arrays for Human Mutation Detection

    PubMed Central

    Lappin, Stephen; Cahlik, Jeff; Gold, Bert

    2001-01-01

    We report on a generally useful, partially automated, human mutation detection method based upon printing moderate density oligonucleotide arrays using a biorobot on activated nylon membranes. The Beckman Biomek 2000 was adapted to this task through fabrication of aluminum membrane filter holders and the development of an addressable Tool Command Language (Tcl) program, which can be invoked through BioScript. During program execution, a robot arm is moved along the x, y, and z axes to expel liquid, without dripping, from disposable barrier pipette tips and then to touch the drops on preactivated membranes. Printed arrays consist of alternating rows of oligonucleotides containing normal and mutant sequences. Hybridization of biotin labeled polymerase chain reaction products derived from human patient genomic DNA samples are visualized using chemiluminescent or chromogenic indicators. This technique allows unequivocal genotyping of 32 mutations at the β-thalassemia locus (11p15.5) and of 34 mutations and one polymorphism at the cystic fibrosis transconductance membrane regulator locus (7p35). PMID:11687602

  14. New observations of the active deformation along the oblique collision/subduction boundary zone between the North American and Caribbean plates (northern Hispaniola offshore margin)

    NASA Astrophysics Data System (ADS)

    Carbó-Gorosabel, Andrés; Granja Bruña, José Luis; Rodríguez Zurrunero, Álvaro; Gómez de la Peña, Laura; Muñoz-Martín, Alfonso; Gómez Ballesteros, María; Gorosabel Araus, José Miguel; Espinosa, Salvador; Pazos, Anatonio; Catalán, Manuel; Yamil Rodríguez Asilis, Hector; Nuñez, José Luis; Muñoz, Santiago; ten Brink, Uri S.; Quijano, Jesús; Llanes Estrada, Pilar; Martín Dávila, José; Druet, María

    2015-04-01

    The Caribbean plate is moving relative to the North American plate at a rate of 20.0 ± 0.4 mm/y towards 074° ± 1°. This eastward motion has been taking place during most of the Cenozoic developing a 250 km-wide band of deformation, in which microplate and block tectonics take place. The eastward motion of the Hispaniola block is being impeded relative to the motion of the Caribbean plate's interior due to the collision with the Bahamas banks. This collision has resulted in the development of the Northern Hispaniola deformed belt along the northern Hispaniola offshore margin. A series of large (M6.2-M8.1) thrust earthquakes from 1943-1953, and two significant events in 1994 (M5.6) and 2003 (M6.4) occurred close to the city of Puerto Plata have been attributed to oblique collision/subduction of the North America plate and Bahamas banks beneath the northern Hispaniola. 300 km of 2D multi-channel seismic (MCS) reflection data and approximately 15000 km2 of high-resolution, systematic swath bathymetry data were recorded in the northern Hispaniola offshore margin as part of a larger survey carried out in November-December of 2013 aboard the Spanish R/V Sarmiento de Gamboa. MCS profiles were collected shooting a GI gun array (GGUN-II®) of 1750 ci. every 37.5 m and the signal recorded in a 3000 m-long streamer with 240 channels (Sentinel Sercel®). Differential GPS navigated high-resolution bathymetry data were collected using the hull-mounted Hydrosweep ATLAS DS echo-sounder system. Using new high-resolution multibeam bathymetry and MCS data, combined with previous 2D seismic data, we have studied the along- and across-strike variations of the geomorphology and shallower structure of the northern Hispaniola offshore margin. Here we present preliminary results focused on the identification and characterization of recent tectonic features in the region and provide well-defined targets to carry out future studies for seismic and tsunamigenic hazard assessment.

  15. Genetics Home Reference: Northern epilepsy

    MedlinePlus

    ... Understand Genetics Home Health Conditions Northern epilepsy Northern epilepsy Enable Javascript to view the expand/collapse boxes. Download PDF Open All Close All Description Northern epilepsy is a genetic condition that causes recurrent seizures ( ...

  16. Western blot patterns of serum autoantibodies against optic nerve antigens in dogs with goniodysgenesis-related glaucoma

    PubMed Central

    Pumphrey, Stephanie A.; Pizzirani, Stefano; Pirie, Christopher G.; Anwer, M. Sawkat; Logvinenko, Tanya

    2014-01-01

    Objective To investigate whether differences existed between clinically normal dogs and dogs with goniodysgenesis-related glaucoma (GDRG) in serum autoantibodies against optic nerve antigens. Animals 16 dogs with GDRG, 17 healthy dogs with unremarkable pectinate ligament and iridocorneal angle morphology, and 13 euthanized dogs with no major ocular abnormalities or underlying diseases. Procedures Western blotting was performed with optic nerve extracts from the euthanized dogs as an antigen source and serum from clinically normal dogs and dogs with GDRG as a primary antibody (autoantibody) source. Blots were evaluated for presence and density of bands. Results Multiple bands were identified on western blots from all dogs with GDRG and all clinically normal dogs, with a high degree of variability among individual dogs. Dogs with GDRG were significantly more likely than healthy dogs to have bands present at 38, 40, and 68 kDa. Dogs with GDRG had significant increases in autoreactivity at 40 and 53 kDa and a significant decrease in autoreactivity at 48 kDa. Conclusions and Clinical Relevance Significant differences in serum autoantibodies against optic nerve antigens were found in dogs with versus without GDRG. Although it remains unclear whether these differences were part of the pathogenesis of disease or were sequelae to glaucomatous changes, these findings provide support for the hypothesis that immune-mediated mechanisms play a role in the development or progression of GDRG. However, the high degree of variability among individual dogs and the considerable overlap between groups suggest that the clinical usefulness of this technique for distinguishing dogs with GDRG from clinically normal dogs is likely limited. PMID:23531071

  17. Diagnosis of enteric fever caused by Salmonella spp. in Vietnam by a monoclonal antibody-based dot-blot ELISA.

    PubMed

    Nguyen, N Q; Tapchaisri, P; Chongsa-nguan, M; Cao, V V; Doan, T T; Sakolvaree, Y; Srimanote, P; Chaicumpa, W

    1997-12-01

    Enteric fever caused by Salmonella spp. is prevalent in Vietnam. None of the currently available diagnostic methods meets the ideal criteria on rapidity, simplicity, sensitivity, specificity, cost-effectiveness and practicality for developing areas. In this study, a recently developed monoclonal antibody-based dot-blot ELISA was used in comparison with the hemoculture method and the classical Widal test for diagnosis of salmonellosis in 171 Vietnamese patients presenting with clinical features of enteric fever. Urine samples of 50 healthy counterparts were used as negative controls. Salmonella spp. were isolated from 77 of 171 patients (45%) while 98 and 111 patients were positive by dot-blot ELISA and Widal test, respectively. The diagnostic sensitivity, specificity, accuracy, positive predictive value and negative predictive value of the ELISA performed on three serial urine samples collected at 2 hour intervals of the 171 patients were 92.2%, 71.3%, 80.7%, 72.4% and 91.8%, respectively when compared with the culture method. The Widal test performed on acute and convalescence serum samples showed 87.0%, 46.8%, 68.4%, 60.4% and 83.3% diagnostic sensitivity, specificity, accuracy, and positive and negative predictive values, respectively when compared with the bacterial culture method. Kappa coefficience revealed very good agreement beyond chance between the MAb-based ELISA and the culture method. The ELISA was not reactive when tested on urine samples of 50 healthy individuals which indicates 100% specificity. The Salmonella antigenuria of the patients as detected by ELISA lasted 10.3+/-3.9 days after initiating antibiotic treatment. The MAb-based dot-blot ELISA is easy to perform. It is rapid, sensitive, specific, inexpensive, and non-invasive and does not require equipment, thus is suitable for developing areas. It can detect acute/recent infection and can be used for evaluation of the efficacy of the treatment. PMID:9579614

  18. Rapid and correct identification of intestinal Bacteroides spp. with chromosomal DNA probes by whole-cell dot blot hybridization

    SciTech Connect

    Morotomi, M.; Ohno, T.; Mutai, M.

    1988-05-01

    A dot blot hybridization procedure with /sup 32/P-labeled whole chromosomal DNA of the type strains as probes was developed as a rapid and simple method for identification of intestinal Bacteroides species. Bacterial cells were fixed onto membrane filters by slight suction, treated with 0.5 N NaOH, and hybridized with these probes. Of 65 Bacteroides strains isolated from 19 human fecal specimens, which were identified as B. fragilis, B. thetaiotaomicron, B. ovatus, B. caccae, B. uniformis, B. stercoris, B. vulgatus, B. distasonis, and B. merdae by conventional phenotypic characterization, 62 (95%) were correctly identified with this hybridization procedure.

  19. Identification of Novel Laminin- and Fibronectin-binding Proteins by Far-Western Blot: Capturing the Adhesins of Streptococcus suis Type 2

    PubMed Central

    Li, Quan; Liu, Hanze; Du, Dechao; Yu, Yanfei; Ma, Caifeng; Jiao, Fangfang; Yao, Huochun; Lu, Chengping; Zhang, Wei

    2015-01-01

    Bacterial cell wall (CW) and extracellular (EC) proteins are often involved in interactions with extracellular matrix (ECM) proteins such as laminin (LN) and fibronectin (FN), which play important roles in adhesion and invasion. In this study, an efficient method combining proteomic analysis and Far-Western blotting assays was developed to screen directly for bacterial surface proteins with LN- and FN-binding capacity. With this approach, fifteen potential LN-binding proteins and five potential FN-binding proteins were identified from Streptococcus suis serotype 2 (SS2) CW and EC proteins. Nine newly identified proteins, including oligopeptide-binding protein OppA precursor (OppA), elongation factor Tu (EF-Tu), enolase, lactate dehydrogenase (LDH), fructose-bisphosphate aldolase (FBA), 3-ketoacyl-ACP reductase (KAR), Gly ceraldehyde-3-phosphate dehydrogenase (GAPDH), Inosine 5′-monophosphate dehydrogenase (IMPDH), and amino acid ABC transporter permease (ABC) were cloned, expressed, purified and further confirmed by Far-Western blotting and ELISA. Five proteins (OppA, EF-Tu, enolase, LDH, and FBA) exhibited specifically binding activity to both human LN and human FN. Furthermore, seven important recombinant proteins were selected and identified to have the ability to bind Hep-2 cells by the indirect immunofluorescent assay. In addition, four recombinant proteins, and their corresponding polyclonal antibodies, were observed to decrease SS2 adhesion to Hep-2 cells, which indicates that these proteins contribute to the adherence of SS2 to host cell surface. Collectively, these results show that the approach described here represents a useful tool for investigating the host-pathogen interactions. PMID:26636044

  20. Telemedicine in northern Quebec.

    PubMed Central

    Roberge, F. A.; Pagé, G.; Sylvestre, J.; Chahlaoui, J.

    1982-01-01

    Television transmission of diagnostic and educational information can help to improve specialized medical care in remote and underserviced areas. This paper describes a pilot study in which the Canadian satellite Anik-B was used to link the James Bay area in northern Quebec with two large Montreal teaching hospitals. Broad-band real-time television was well suited for tele-education and teleconsultation activities. A much less costly method, using narrow-band slow-scan television, was also examined, but it requires improvements. The technology of telemedicine is in place, but its future use is impeded by the prohibitive costs of operating an efficient two-way broad-band television system for several remote health care sites. A solution to this problem may be an intermediate-band system combining some of the low-cost features of narrowband slow-scan television with the interactive high-resolution advantages of broad-band real-time television. PMID:7139483

  1. Immunohistochemical and Western Blotting Analyses of Ganoine in the Ganoid Scales of Lepisosteus oculatus: an Actinopterygian Fish.

    PubMed

    Sasagawa, Ichiro; Oka, Shunya; Mikami, Masato; Yokosuka, Hiroyuki; Ishiyama, Mikio; Imai, Akane; Shimokawa, Hitoyata; Uchida, Takashi

    2016-05-01

    In order to compare its characteristics with those of jaw tooth collar enamel, normally developing and experimentally regenerating ganoine from ganoid scales of Lepisosteus oculatus (spotted gar), an actinopterygian fish species, was examined by Western blotting and immunohistochemistry. Amelogenin, a major enamel matrix protein (EMP), is widely found from sarcopterygian fish to mammals. Therefore, we used antimammalian amelogenin antibodies and antisera: an antibody against bovine amelogenin; antiserum against porcine amelogenin; and region-specific antibodies or antiserum against the C-terminus, middle region, or N-terminus of porcine amelogenin in this study. Positive immunoreactivity with the antibody against bovine amelogenin, antiserum against porcine amelogenin, and the middle and C-terminal region-specific antibodies was detected in both normally developing and regenerating ganoine matrix, as well as in granules found within inner ganoine epithelial cells. These immunohistochemical analyses indicated that the Lepisosteus ganoine matrix contains EMP-like proteins with epitopes similar to mammalian amelogenins. In Western blotting analyses of regenerating ganoid scales with the antibovine amelogenin antibody, two protein bands with molecular weights of approximately 78 and 65 kDa were detected, which were similar to those found in Lepisosteus tooth enamel. Our study suggests that in Lepisosteus, EMP-like proteins in the ganoine matrix corresponded to those in tooth enamel. However, it was revealed that the 78 and 65 kDa EMP-like proteins were different from 27 kDa bovine amelogenin. PMID:27139791

  2. Mutation analysis of fragile X syndrome by Southern blot, radioactive PCR, silver-stained polyacrylamide gel and DIG DNA

    SciTech Connect

    Lee, Sook-Hwan; Kim, Un-Kyung; Chung-Woong, M.S.

    1994-09-01

    Fragile X syndrome is the most common inherited form of mental retardation. In fragile X syndrome, the underlying mutation is caused by an expansion of the CTG triplet in the 5{prime} untranslated region of the FMR-1 gene located at Xq27.3 and diagnosed by methylation of the associated CpG island. This disorder becomes clinically manifested when the mutation is caused by an expansion of (CGG)n reaching a threshold of about 600bp (200 repeats). The number of inserted repeats increases through the generation. We have analyzed fragile X syndrome by 4 different methods: Southern blot, radioactive PCR, polyacrylamide gel and DIG DNA labeling/detection techniques. Southern blot and DIG DNA labeling/detection by double DNA digestion with EcoRI and EagI reveals both the presence of the mutation and the methylation status. Radioactive PCR and silver-stained polyacrylamide gel is a rapid and sensitive technique to define the unaffected carriers and NTMs, but it is difficult to amplify such a highly GC-rich sequence. Further testing in other fragile X patients is currently in progress.

  3. Identification of Glioblastoma Phosphotyrosine-Containing Proteins with Two-Dimensional Western Blotting and Tandem Mass Spectrometry

    PubMed Central

    Guo, Tianyao; Wang, Xiaowei; Li, Maoyu; Yang, Haiyan; Li, Ling; Peng, Fang

    2015-01-01

    To investigate the presence of, and the potential biological roles of, protein tyrosine phosphorylation in the glioblastoma pathogenesis, two-dimensional gel electrophoresis- (2DGE-) based Western blotting coupled with liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS) analysis was used to detect and identify the phosphotyrosine immunoreaction-positive proteins in a glioblastoma tissue. MS/MS and Mascot analyses were used to determine the phosphotyrosine sites of each phosphopeptide. Protein domain and motif analysis and systems pathway analysis were used to determine the protein domains/motifs that contained phosphotyrosine residue and signal pathway networks to clarify the potential biological functions of protein tyrosine phosphorylation. A total of 24 phosphotyrosine-containing proteins were identified. Each phosphotyrosine-containing protein contained at least one tyrosine kinase phosphorylation motif and a certain structural and functional domains. Those phosphotyrosine-containing proteins were involved in the multiple signal pathway systems such as oxidative stress, stress response, and cell migration. Those data show 2DGE-based Western blotting, MS/MS, and bioinformatics are a set of effective approaches to detect and identify glioblastoma tyrosine-phosphorylated proteome and to effectively rationalize the biological roles of tyrosine phosphorylation in the glioblastoma biological systems. It provides novel insights regarding tyrosine phosphorylation and its potential role in the molecular mechanism of a glioblastoma. PMID:26090378

  4. Simple and Sensitive Detection of HBsAg by Using a Quantum Dots Nanobeads Based Dot-Blot Immunoassay

    PubMed Central

    Zhang, Pengfei; Lu, Huiqi; Chen, Jia; Han, Huanxing; Ma, Wei

    2014-01-01

    Simple and sensitive detection of infectious disease at an affordable cost is urgently needed in developing nations. In this regard, the dot blot immunoassay has been used as a common protein detection method for detection of disease markers. However, the traditional signal reporting systems, such as those using enzymes or gold nanoparticles lack sensitivity and thus restrict the application of these methods for disease detection. In this study, we report a simple and sensitive detection method for the detection of infectious disease markers that couples the dot-blot immunoassay with quantum dots nanobeads (QDNBs) as a reporter. First, the QDNBs were prepared by an oil-in-water emulsion-evaporation technique. Because of the encapsulation of several QDs in one particle, the fluorescent signal of reporter can be amplified with QDNBs in a one-step test and be read using a UV lamp obviating the need for complicated instruments. Detection of disease-associated markers in complex mixture is possible, which demonstrates the potential of developing QDNBs into a sensitive diagnostic kit. PMID:24505238

  5. Simple and sensitive detection of HBsAg by using a quantum dots nanobeads based dot-blot immunoassay.

    PubMed

    Zhang, Pengfei; Lu, Huiqi; Chen, Jia; Han, Huanxing; Ma, Wei

    2014-01-01

    Simple and sensitive detection of infectious disease at an affordable cost is urgently needed in developing nations. In this regard, the dot blot immunoassay has been used as a common protein detection method for detection of disease markers. However, the traditional signal reporting systems, such as those using enzymes or gold nanoparticles lack sensitivity and thus restrict the application of these methods for disease detection. In this study, we report a simple and sensitive detection method for the detection of infectious disease markers that couples the dot-blot immunoassay with quantum dots nanobeads (QDNBs) as a reporter. First, the QDNBs were prepared by an oil-in-water emulsion-evaporation technique. Because of the encapsulation of several QDs in one particle, the fluorescent signal of reporter can be amplified with QDNBs in a one-step test and be read using a UV lamp obviating the need for complicated instruments. Detection of disease-associated markers in complex mixture is possible, which demonstrates the potential of developing QDNBs into a sensitive diagnostic kit. PMID:24505238

  6. Tissue blot immunoassay and direct RT-PCR of cucumoviruses and potyviruses from the same NitroPure nitrocellulose membrane.

    PubMed

    Chang, Peta-Gaye S; McLaughlin, Wayne A; Tolin, Sue A

    2011-02-01

    A method is described for using Nitropure nitrocellulose (NPN) membranes as an effective solid matrix for retrieval of template RNA of three potyviruses, Tobacco etch virus, Soybean mosaic virus and Turnip mosaic virus, and two cucumoviruses, Cucumber mosaic virus and Peanut stunt virus. These NPN membranes were also used for tissue blot immunosorbent assays (TBIAs) to identify and detect plant viruses. For RNA detection, discs from dried membranes blotted with infected tissue were minimally cleaned with Triton X-100 and placed directly into reverse transcription (RT) reactions to initiate cDNA synthesis. Aliquots of cDNA plus primers specific for coat protein produced PCR amplicons of expected sizes for each of the viruses. Intensity of PCR-amplified bands from cDNA transcribed from both non-processed and TBIA-processed NPN membranes was comparable to those using FTA Card protocols. Direct sequencing of PCR products yielded high quality runs enabling identification to species. NPN membranes retained immunologically detectable virus particles, as well as intact template viral RNA, for more than a year at room temperature. The quantity of amplification product decreased after several months of storage, but could be increased by increasing the number of PCR cycles. PMID:21126542

  7. Phylogenetic distribution of apolipoproteins A-I and E in vertebrates as determined by Western blot analysis.

    PubMed

    Duggan, A E; Callard, I P

    2001-08-01

    A putative apolipoprotein E (apoE) has been identified in the HDL and VHDL fractions of the turtle. This observation is of particular interest considering apoE has been reported absent in the domestic hen (Hermier et al., '95; Biochim Biophys Acta: 105-118, 1995) and thus presumed absent in nonmammalian vertebrates altogether. As a result, partial amino acid sequencing of this protein was performed and revealed that one fragment shared 41% sequence identity to human apoE. Western blot analysis using antisera to apoE demonstrated cross-reactivity to a 34-kDa protein (putative apoE) in turtle plasma. Further investigation using anti-apoE antibody in Western blot analysis detected immunoreactive apoE in the plasma of lamprey, spiny dogfish, skate, and alligator, but not in flounder, newt or python; its absence in several species of birds was confirmed. Using anti-apoA-I antibody, apoA-I was detected in all vertebrate groups except a representative teleost (flounder). Apo-A-I antibody cross-reacted weakly with some putative apoE proteins (chicken, spiny dogfish and skate) and the reverse was true for anti-apoE, which cross-reacted with putative apoA-I in birds, reptiles, and elasmobranchs, confirming the molecular similarity and phylogenetic relatedness of these two proteins. PMID:11479905

  8. Active deformation in the Northern Walker Lane: a detailed geodetic study of the Mohawk Valley and Honey Lake/Warm Springs fault systems

    NASA Astrophysics Data System (ADS)

    Bormann, J. M.; Hammond, W. C.; Kreemer, C. W.; Blewitt, G.

    2012-12-01

    The Mohawk Valley and Honey Lake/Warm Springs faults are parallel, northwest striking, dextral fault systems separated by ~50 km in the westernmost part of the Northern Walker Lane. These two faults work as a cooperative pair to accommodate 3-5 mm/yr of the total 8 mm/yr of right-lateral deformation geodetically observed across the Northern Walker Lane, however it is unclear with fault is dominant. Geologic studies of the faults result in right-lateral slip rates of 1-2.5 mm/yr on the Honey Lake fault and a minimum of 0.3 mm/yr on the Mohawk Valley fault. In contrast, previous geodetic studies estimate slip rates of ~1 mm/yr on the Honey Lake fault and ~3 mm/yr on the Mohawk Valley fault. To reconcile the discrepancy between the distribution of slip on the faults and the differences between sums of the geologically and geodetically estimated slip rates, we use new GPS data to constrain an elastic block model developed specifically to study the Mohawk Valley and Honey Lake/Warm Springs fault systems. We present a dense GPS velocity solution (~10 km average station spacing) that incorporates new data from the semi-continuous Mobile Array of GPS for Nevada Transtension network (MAGNET, http://geodesy.unr.edu/networks) operated by the University of Nevada, Reno with continuous data from the EarthScope Plate Boundary Observatory and other networks. Data collected during the summer of 2012 bring many MAGNET GPS time series in the Northern Walker Lane to near 5 years in duration. The density of our velocity field and recent advances in data processing give us unprecedented precision in the measurement of contemporary deformation in the Northern Walker Lane. We use the velocity solution to solve for slip rates on the companion fault systems and explore the effects of block model geometry assumptions and tradeoffs. Our model predicts slip rates of 2.2±0.3 mm/yr for the Mohawk Valley fault and 1.1±0.2 mm/yr for the Honey Lake fault. Block model slip rate estimates are

  9. Detection of Sleeping Beauty transposition in the genome of host cells by non-radioactive Southern blot analysis.

    PubMed

    Aravalli, Rajagopal N; Park, Chang W; Steer, Clifford J

    2016-08-26

    The Sleeping Beauty transposon (SB-Tn) system is being used widely as a DNA vector for the delivery of therapeutic transgenes, as well as a tool for the insertional mutagenesis in animal models. In order to accurately assess the insertional potential and properties related to the integration of SB it is essential to determine the copy number of SB-Tn in the host genome. Recently developed SB100X transposase has demonstrated an integration rate that was much higher than the original SB10 and that of other versions of hyperactive SB transposases, such as HSB3 or HSB17. In this study, we have constructed a series of SB vectors carrying either a DsRed or a human β-globin transgene that was encompassed by cHS4 insulator elements, and containing the SB100X transposase gene outside the SB-Tn unit within the same vector in cis configuration. These SB-Tn constructs were introduced into the K-562 erythroid cell line, and their presence in the genomes of host cells was analyzed by Southern blot analysis using non-radioactive probes. Many copies of SB-Tn insertions were detected in host cells regardless of transgene sequences or the presence of cHS4 insulator elements. Interestingly, the size difference of 2.4 kb between insulated SB and non-insulated controls did not reflect the proportional difference in copy numbers of inserted SB-Tns. We then attempted methylation-sensitive Southern blots to assess the potential influence of cHS4 insulator elements on the epigenetic modification of SB-Tn. Our results indicated that SB100X was able to integrate at multiple sites with the number of SB-Tn copies larger than 6 kb in size. In addition, the non-radioactive Southern blot protocols developed here will be useful to detect integrated SB-Tn copies in any mammalian cell type. PMID:27329815

  10. Common catabolic enzyme patterns in a microplankton community of the Humboldt Current System off northern and central-south Chile: Malate dehydrogenase activity as an index of water-column metabolism in an oxygen minimum zone

    NASA Astrophysics Data System (ADS)

    González, R. R.; Quiñones, R. A.

    2009-07-01

    An extensive subsurface oxygen minimum zone off northern and central-south Chile, associated with the Peru-Chile undercurrent, has important effects on the metabolism of the organisms inhabiting therein. Planktonic species deal with the hypoxic and anoxic environments by relying on biochemical as well as physiological processes related to their anaerobic metabolisms. Here we characterize, for the first time, the potential enzymatic activities involved in the aerobic and anaerobic energy production pathways of microplanktonic organisms (<100 μm), their relationship, and this relationship's association with the oxygen concentration and microplanktonic biomass in the oxygen minimum zone and adjacent areas of the Humboldt Current System water column. Our results demonstrate significant potential enzymatic activity of catabolic pathways in the oxygen minimum zone. Malate dehydrogenase had the highest oxidizing activity of nicotinamide adenine dinucleotide (reduced form) in the batch of catabolic enzymatic activities assayed, including potential pyruvate oxidoreductases activity, the electron transport system, and dissimilatory nitrate reductase. Malate dehydrogenase correlated significantly with almost all the enzymes analyzed within and above the oxygen minimum zone, and also with the oxygen concentration and microplankton biomass in the water column of the Humboldt Current System, especially in the oxygen minimum zone off Iquique. These results suggest a possible specific pattern for the catabolic activity of the microplanktonic realm associated with the oxygen minimum zone spread along the Humboldt Current System off Chile. We hypothesize that malate dehydrogenase activity could be an appropriate indicator of microplankton catabolism in the oxygen minimum zone and adjacent areas.

  11. Transcription factor proteomics: identification by a novel gel mobility shift-three-dimensional electrophoresis method coupled with southwestern blot and high-performance liquid chromatography-electrospray-mass spectrometry analysis.

    PubMed

    Jiang, Daifeng; Jia, Yinshan; Jarrett, Harry W

    2011-09-28

    Transcription factor (TF) purification and identification is an important step in elucidating gene regulatory mechanisms. In this study, we present two new electrophoretic mobility shift assay (EMSA)-based multi-dimensional electrophoresis approaches to isolate and characterize TFs, using detection with either southwestern or western blotting and HPLC-nanoESI-MS/MS analysis for identification. These new techniques involve several major steps. First, EMSA is performed with agents that diminish non-specific DNA-binding and the DNA-protein complex is separated by native PAGE gel. The gel is then electrotransferred to PVDF membrane and visualized by autoradiography. Next, the DNA-protein complex, which has been transferred onto the blot, is extracted using a detergent-containing elution buffer. Following detergent removal, concentrated extract is separated by SDS-PAGE (EMSA-2DE), followed by in-gel trypsin digestion and HPLC-nanoESI-MS/MS analysis, or the concentrated extract is separated by two-dimensional gel electrophoresis (EMSA-3DE), followed by southwestern or western blot analysis to localize DNA binding proteins on blot which are further identified by on-blot trypsin digestion and HPLC-nanoESI-MS/MS analysis. Finally, the identified DNA binding proteins are further validated by EMSA-immunoblotting or EMSA antibody supershift assay. This approach is used to purify and identify GFP-C/EBP fusion protein from bacterial crude extract, as well as purifying AP1 and CEBP DNA binding proteins from a human embryonic kidney cell line (HEK293) nuclear extract. AP1 components, c-Jun, Jun-D, c-Fos, CREB, ATF1 and ATF2 were successfully identified from 1.5 mg of nuclear extract (equivalent to 3×10(7) HEK293 cells) with AP1 binding activity of 750 fmol. In conclusion, this new strategy of combining EMSA with additional dimensions of electrophoresis and using southwestern blotting for detection proves to be a valuable approach in the identification of transcriptional complexes

  12. [THE SCREENING OF DIAGNOSTIC POTENTIAL OF NATIVE PROTEIN FRACTIONS OF MYCOBACTERIUM TUBERCULOSIS USING TECHNIQUE OF IMMUNE BLOTTING].

    PubMed

    Tsibulkin, A P; Khaertinova, I M; Urazov, N G; Khaertinov, K S

    2016-02-01

    The technique of immune blotting was used to analyze surface proteins obtained from cells M Tuberculosis exposed to partialmode of delipidization. At that, there were applied serums of patients with tuberculosis of lungs; HIV agents and patients with concomitant infection tuberculosis-AIDS and also HIV-negative patients without clinical signs of disease of lungs and with chronic diseases of lungs of other etiology The fractions oflow-molecular antigens with molecular mass 6.5-30 kilodaltons became diagnostically significant. To this fraction of antigens reacted serums of all patients with tuberculosis of lungs and serums of 91% of patients with concomitant tuberculosis-AIDS infection. The antigens of protein fractions with high (70-100 kilodaltons) and interim (30-69 kilodaltons) molecular mass became diagnostically insignificant. PMID:27455562

  13. Rabbit antisera against three different bacteria which can induce reactive arthritis: analysis by ELISA, immunoprecipitation and Western Blot.

    PubMed Central

    Ogasawara, M; Kobayashi, S; Hill, J L; Kono, D H; Yu, D T

    1985-01-01

    Three strains of bacteria which induce reactive arthritis were collected: a Shigella flexneri, designated 7060; another Sh. flexneri, designated 316; and a Yersinia enterocolitica of serotype 03. Rabbit antisera were generated against each of them to test for the extent and nature of cross-reactivity among these strains. When analysed by the ELISA technique, antisera against 7060 and 316 showed strong cross-reactivity with Y. enterocolitica. In contrast, the reaction of antisera prepared against putatively non-arthritis-causing bacteria reacted several-folds less. Using immunoprecipitation, sodium dodecyl sulphate-polyacrylamide gel electrophoresis and Western Blot procedures, a 92,000 MW cross-reactive antigen on the Yersinia was identified. The antigen was present on the outer membranes of the Y. enterocolitica, and enzyme digestion experiments showed that this antigen was protein in nature. Images Figure 1 Figure 2 Figure 3 Figure 4 PMID:3884493

  14. Serologic immunoreactivity to Neospora caninum antigens in dogs determined by indirect immunofluorescence, western blotting and dot-ELISA.

    PubMed

    Pinheiro, A M; Costa, M F; Paule, B; Vale, V; Ribeiro, M; Nascimento, I; Schaer, R E; Almeida, M A O; Meyer, R; Freire, S M

    2005-06-10

    Neospora caninum, is a coccidian protozoan known as a major cause of bovine abortion and canine neuropathies. The aim of the present study was to develop a reliable and quick test to detect antibodies to N. caninum in dog sera. Sixty-five serum samples from dogs, including 35 positive and 30 negative for N. caninum antibodies were used for standardization of the test. In parallel, immunoreactivity of the sera to Toxoplasma gondii antigens was investigated using a passive agglutination test. A dot-ELISA test, using soluble extract of N. caninum tachyzoites on nitrocellulose ester membranes, was developed and standardized. SDS-PAGE and complementary analysis of reactivity by Western blotting were used for the characterization of the immunoreactive fractions of all tested sera. The sensitivity and specificity of the dot-ELISA were 94 and 73%, respectively, compared to IFAT at a cut-off of 1:50, and 87 and 100% compared to IFAT at a cut-off of 1:25. Among the sera that tested positively for both IFAT and dot-ELISA, only 8.6% were reactive to T. gondii. The most immunoreactive fractions in Western blots were the 14-, 33-, 42- and 55 kDa bands, with percentages of 42, 60, 42 and 37%, respectively. The 60 kDa band showed a non-specific reaction in 43% of neosporosis-negative animals by both dot-ELISA and IFAT. These results indicate that the dot-ELISA using N. caninum antigen present good sensitivity and specificity, and might be used as a screening test to detect antibodies to N. caninum in dogs. PMID:15893072

  15. Imprinting mutations in Angelman syndrome detected by Southern blotting using a probe containing exon {alpha} of SNRPN

    SciTech Connect

    Beuten, J.; Sutcliffe, J.S.; Nakao, M.

    1994-09-01

    Prader-Willi syndrome (PWS) and Angelman syndrome (AS) are associated with paternal and maternal deficiencies respectively, of gene expression within human chromosome 15q11-q13, and are caused by deletion, uniparental disomy (UPD), or other mutations. The SNRPN gene maps in this region, is paternally expressed, and is a candidate gene for PWS. Southern blotting using methylation-sensitive enzymes and a genomic DNA probe from the CpG island containing exon {alpha} of the SNRPN gene reveals methylation specific for the maternal allele. In cases of the usual deletions or UPD, the probe detects absence of an unmethylated allele in PWS and absence of a methylated allele in AS. We have analyzed 21 nondeletion/nonUPD AS patients with this probe and found evidence for an imprinting mutation (absence of a methylated allele) in 3 patients. Southern blotting with methylation-sensitive enzymes using the exon {alpha} probe, like use of the PW71 probe, should detect abnormalities in all known PWS cases and in 3 of the 4 forms of AS: deletion, UPD and imprinting mutations. This analysis provides a valuable diagnostic approach for PWS and AS. In efforts to localize the imprinting mutations in AS, one patient was found with failure to inherit a dinucleotide repeat polymorphism near probe 189-1 (D15S13). Analysis of this locus in AS families and CEPH families demonstrates a polymorphism that impairs amplification and a different polymorphism involving absence of hybridization to the 189-1 probe. The functional significance, if any, of deletion of the 189-1 region is unclear.

  16. Quantitative Western ligand blotting reveals common patterns and differential features of IGFBP-fingerprints in domestic ruminant breeds and species.

    PubMed

    Wirthgen, Elisa; Höflich, Christine; Spitschak, Marion; Helmer, Carina; Brand, Bodo; Langbein, Jan; Metzger, Friedrich; Hoeflich, Andreas

    2016-02-01

    The insulin-like growth factor binding proteins (IGFBPs) are determinants of local IGF-effects and thus have an impact on growth and metabolism in vertebrate species. In farm animals, IGFBPs are associated with traits such as growth rate, body composition, milk production, or fertility. It may be assumed, that selective breeding and characteristic phenotypes of breeds are related to differential expression of IGFBPs. Therefore, the aim of the present study was to investigate the effects of selective breeding on blood IGFBP concentrations of farm animals. Breeds of the sheep, goat, and cattle species were investigated. IGFBP-3, -2, and -4 were analyzed with quantitative Western ligand blotting (qWLB), enabling comprehensive monitoring of intact IGFBPs with IGF-binding capacity. We show that in sera of all species and breeds investigated, IGFBP-3, -2, and -4 were simultaneously detectable by qWLB analysis. IGFBP-3 and the total amount of IGFBPs were significantly increased (P<0.05) in Cameroon sheep, if compared to 3 of 4 other sheep breeds, as well as in Dwarf goats versus Toggenburg and Boer goats (P<0.01). IGFBP-2 was elevated in Cameroon sheep and Boer goats, if compared to other breeds of these species (P<0.01), respectively. Holstein Friesian dairy cows had higher levels of IGFBP-4 (P<0.05), if compared to conventional crossbreeds of beef cattle. In Dwarf goats the ratio of IGFBP-3/IGFBP-2 was about 3-fold higher than in other goat breeds (P<0.001). The total IGFBP amount of Toggenburg goats was reduced (P<0.05), compared to the other goat breeds. In conclusion, our data indicate that common and specific features of IGFBP fingerprints are found in different ruminant species and breeds. Our findings may introduce quantitative Western ligand blotting as an attractive tool for biomarker development and molecular phenotyping in farm animal breeds. PMID:26597140

  17. Murine interleukin 1 receptor. Direct identification by ligand blotting and purification to homogeneity of an interleukin 1-binding glycoprotein

    SciTech Connect

    Bird, T.A.; Gearing, A.J.; Saklatvala, J.

    1988-08-25

    Functional receptors (IL1-R) for the proinflammatory cytokine interleukin 1 (IL1) were solubilized from plasma membranes of the NOB-1 subclone of murine EL4 6.1 thymoma cells using the zwitterionic detergent 3((3-cholamidopropyl)dimethylammonio)-1-propanesulfonate (CHAPS). Membrane extracts were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred to nitrocellulose membranes, and ligand blotted with /sup 125/I-labeled recombinant human IL1 alpha in order to reveal proteins capable of specifically binding IL1. A single polydisperse polypeptide of Mr approximately equal to 80,000 was identified in this way, which bound IL1 alpha and IL1 beta with the same affinity as the IL1-R on intact NOB-1 cells (approximately equal to 10(-10) M). The IL1-binding polypeptide was only seen in membranes from IL1-R-bearing cells and did not react with interleukin 2, tumor necrosis factor alpha, or interferon. IL1-R was purified to apparent homogeneity from solubilized NOB-1 membranes by affinity chromatography on wheat germ agglutinin-Sepharose and IL1 alpha-Sepharose. Gel electrophoresis and silver staining of purified preparations revealed a single protein of Mr approximately equal to 80,000 which reacted positively in the ligand-blotting procedure and which we identify as the ligand-binding moiety of the murine IL1-R. Purified IL1-R exhibited the same affinity and specificity as the receptor on intact cells. The relationship of this protein to proteins identified by covalent cross-linking studies is discussed.

  18. Northern Plains 'Crater'

    NASA Technical Reports Server (NTRS)

    2004-01-01

    10 December 2004 The lower left (southwest) corner of this Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows the location of a somewhat filled and buried meteor impact crater on the northern plains of Mars. The dark dots are boulders. A portion of a similar feature is seen in the upper right (northeast) corner of the image. This picture, showing landforms (including the odd mound north/northeast of the crater) that are typical of the martian northern lowland plains, was obtained as part of the MGS MOC effort to support the search for a landing site for the Phoenix Mars Scout lander. Phoenix will launch in 2007 and land on the northern plains in 2008. This image is located near 68.0oN, 227.4oW, and covers an area approximately 3 km (1.9 mi) wide. The scene is illuminated by sunlight from the lower left.

  19. Seroprevalence of HIV-type 1 in a northern California health plan population: an unlinked survey.

    PubMed Central

    Hiatt, R A; Capell, F J; Ascher, M S

    1992-01-01

    We conducted an unlinked seroprevalence survey for human immunodeficiency virus-type 1 (HIV-1) of 9821 persons who had a routine personal health appraisal examination in 1989 while members of the Kaiser Permanente Medical Care Program in northern California. An outside laboratory performed enzyme immunoassay (EIA) analyses, and the California Viral and Rickettsial Diseases Laboratory confirmed EIA-reactive samples by immunofluorescent assay and Western blot assay. Only 20 specimens (0.2%) were confirmed as positive, and 18 were from men. These data suggest that, at the time of this survey, HIV-1 infection was not widespread in the northern California population represented by this health plan membership. PMID:1546773

  20. Morbidity and Mortality Patterns of Hospitalised Adult HIV/AIDS Patients in the Era of Highly Active Antiretroviral Therapy: A 4-year Retrospective Review from Zaria, Northern Nigeria

    PubMed Central

    Ogoina, Dimie; Obiako, Reginald O.; Muktar, Haruna M.; Adeiza, Mukhtar; Babadoko, Aliyu; Hassan, Abdulaziz; Bansi, Isa; Iheonye, Henry; Iyanda, Matthew; Tabi-Ajayi, Eric

    2012-01-01

    Background. This study, undertaken in major tertiary hospital in northern Nigeria, examined the morbidity and mortality patterns of hospitalised adult HIV/AIDS patients in the HAART era. Methods. Between January 2006 and December 2009, admission records and causes of deaths of hospitalised medical HIV-infected patients were retrieved and analysed according to antiretroviral (ART) status. Results. Of the 207 HIV/AIDS patients reviewed, majority were newly diagnosed (73.4%), and most were hospitalised and died from various AIDS-defining illnesses, mainly disseminated tuberculosis and sepsis. Immune-inflammatory-reconstitution-syndrome, ART-toxicity and ART-failure, contributed to morbidity and mortality in patients receiving ART. Sixty six (31.9%) patients died, with higher mortality in males and in those with lower CD4-cell count, lower PCV, and shorter hospital stay. However, hospital stay ≤3 days and severe anaemia (PCV < 24%) were independent predictors of mortality. Conclusion. In the current HAART era, late presentation and tuberculosis continue to fuel the HIV/AIDS pandemic in Africa, with emerging challenges due to ART-related complications. PMID:23019521

  1. FACING NORTHEAST ACROSS NORTHERN END OF PARK TOWARDS ITS NORTHERN ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    FACING NORTHEAST ACROSS NORTHERN END OF PARK TOWARDS ITS NORTHERN CORNER - Candler Park Historic District, Roughly bounded by Moreland, Dekalb, McLendon & Harold Avenues, Matthews Street & Clifton Terrace, Atlanta, Fulton County, GA

  2. Patterns of extracellular enzyme activities and microbial metabolism in an Arctic fjord of Svalbard and in the northern Gulf of Mexico: contrasts in carbon processing by pelagic microbial communities.

    PubMed

    Arnosti, Carol; Steen, Andrew D

    2013-01-01

    The microbial community composition of polar and temperate ocean waters differs substantially, but the potential functional consequences of these differences are largely unexplored. We measured bacterial production, glucose metabolism, and the abilities of microbial communities to hydrolyze a range of polysaccharides in an Arctic fjord of Svalbard (Smeerenburg Fjord), and thus to initiate remineralization of high-molecular weight organic matter. We compared these data with similar measurements previously carried out in the northern Gulf of Mexico in order to investigate whether differences in the spectrum of enzyme activities measurable in Arctic and temperate environments are reflected in "downstream" aspects of microbial metabolism (metabolism of monomers and biomass production). Only four of six polysaccharide substrates were hydrolyzed in Smeerenburg Fjord; all were hydrolyzed in the upper water column of the Gulf. These patterns are consistent on an interannual basis. Bacterial protein production was comparable at both locations, but the pathways of glucose utilization differed. Glucose incorporation rate constants were comparatively higher in Svalbard, but glucose respiration rate constants were higher in surface waters of the Gulf. As a result, at the time of sampling ca. 75% of the glucose was incorporated into biomass in Svalbard, but in the northern Gulf of Mexico most of the glucose was respired to CO2. A limited range of enzyme activities is therefore not a sign of a dormant community or one unable to further process substrates resulting from extracellular enzymatic hydrolysis. The ultimate fate of carbohydrates in marine waters, however, is strongly dependent upon the specific capabilities of heterotrophic microbial communities in these disparate environments. PMID:24198812

  3. Patterns of extracellular enzyme activities and microbial metabolism in an Arctic fjord of Svalbard and in the northern Gulf of Mexico: contrasts in carbon processing by pelagic microbial communities

    PubMed Central

    Arnosti, Carol; Steen, Andrew D.

    2013-01-01

    The microbial community composition of polar and temperate ocean waters differs substantially, but the potential functional consequences of these differences are largely unexplored. We measured bacterial production, glucose metabolism, and the abilities of microbial communities to hydrolyze a range of polysaccharides in an Arctic fjord of Svalbard (Smeerenburg Fjord), and thus to initiate remineralization of high-molecular weight organic matter. We compared these data with similar measurements previously carried out in the northern Gulf of Mexico in order to investigate whether differences in the spectrum of enzyme activities measurable in Arctic and temperate environments are reflected in “downstream” aspects of microbial metabolism (metabolism of monomers and biomass production). Only four of six polysaccharide substrates were hydrolyzed in Smeerenburg Fjord; all were hydrolyzed in the upper water column of the Gulf. These patterns are consistent on an interannual basis. Bacterial protein production was comparable at both locations, but the pathways of glucose utilization differed. Glucose incorporation rate constants were comparatively higher in Svalbard, but glucose respiration rate constants were higher in surface waters of the Gulf. As a result, at the time of sampling ca. 75% of the glucose was incorporated into biomass in Svalbard, but in the northern Gulf of Mexico most of the glucose was respired to CO2. A limited range of enzyme activities is therefore not a sign of a dormant community or one unable to further process substrates resulting from extracellular enzymatic hydrolysis. The ultimate fate of carbohydrates in marine waters, however, is strongly dependent upon the specific capabilities of heterotrophic microbial communities in these disparate environments. PMID:24198812

  4. Western blot analysis to illustrate relative control levels of the lac and ara promoters in Escherichia coli.

    PubMed

    Nielsen, Brent L; Willis, Van C; Lin, Chin-Yo

    2007-03-01

    The lactose operon and its control is a fundamental transcriptional regulatory concept presented in introductory and many advanced molecular biology courses. Much is known about the positive and negative control mechanisms that govern levels of expression of this operon. One basic principle that is taught about the lac operon is that it is "leaky," meaning that the transcriptional control of the operon is not 100% efficient and that in wild-type cells, transcription from the promoter is never completely "off," but there is always some basal transcription. In contrast, the arabinose operon is often used as an example of a tightly controlled operon, and transcription from the ara promoter is very low in the absence of inducer. The relative levels of control of these two operons can be illustrated using Western blots of proteins expressed in the presence and absence of the appropriate inducers and antibodies against the gene products. Different times of growth and the addition of inducer can also be examined. The results are very dramatic and help to reinforce the principles of promoter control. PMID:21591073

  5. New method for simultaneous species-specific identification of equine strongyles (nematoda, strongylida) by reverse line blot hybridization.

    PubMed

    Traversa, Donato; Iorio, Raffaella; Klei, Thomas R; Kharchenko, Vitaliy A; Gawor, Jakub; Otranto, Domenico; Sparagano, Olivier A E

    2007-09-01

    The ability of a reverse line blot (RLB) assay to identify 13 common species of equine small strongyles (cyathostomins) and to discriminate them from three Strongylus spp. (large strongyles) was demonstrated. The assay relied on the specific hybridization of PCR-amplified intergenic spacer DNA fragments of the nuclear ribosomal DNA to membrane-bound species-specific probes. All cyathostomins examined were unequivocally identified and simultaneously discriminated from each other and from three large strongyles (Strongylus edentatus, Strongylus equinus, and Strongylus vulgaris). This assay will enable the accurate and rapid identification of equine cyathostomins irrespective of their life cycle stage, opening important avenues for a better understanding of their biology and epidemiology and of the pathogenesis of cyathostomin-associated disease. In particular, this RLB method promises to be a powerful diagnostic tool to determine the roles of individual species in the pathogenesis of mixed infections and to elucidate some aspects of cyathostominosis. Also, it could represent a basic step toward the development of a rapid and simple molecular test for the early detection of drug-resistant genotypes of horse strongyle species. PMID:17626168

  6. New Method for Simultaneous Species-Specific Identification of Equine Strongyles (Nematoda, Strongylida) by Reverse Line Blot Hybridization▿

    PubMed Central

    Traversa, Donato; Iorio, Raffaella; Klei, Thomas R.; Kharchenko, Vitaliy A.; Gawor, Jakub; Otranto, Domenico; Sparagano, Olivier A. E.

    2007-01-01

    The ability of a reverse line blot (RLB) assay to identify 13 common species of equine small strongyles (cyathostomins) and to discriminate them from three Strongylus spp. (large strongyles) was demonstrated. The assay relied on the specific hybridization of PCR-amplified intergenic spacer DNA fragments of the nuclear ribosomal DNA to membrane-bound species-specific probes. All cyathostomins examined were unequivocally identified and simultaneously discriminated from each other and from three large strongyles (Strongylus edentatus, Strongylus equinus, and Strongylus vulgaris). This assay will enable the accurate and rapid identification of equine cyathostomins irrespective of their life cycle stage, opening important avenues for a better understanding of their biology and epidemiology and of the pathogenesis of cyathostomin-associated disease. In particular, this RLB method promises to be a powerful diagnostic tool to determine the roles of individual species in the pathogenesis of mixed infections and to elucidate some aspects of cyathostominosis. Also, it could represent a basic step toward the development of a rapid and simple molecular test for the early detection of drug-resistant genotypes of horse strongyle species. PMID:17626168

  7. Comparison of trichloroacetic acid with other protein-precipitating agents in enriching abnormal prion protein for Western blot analysis.

    PubMed

    LeBrun, Matthew; Huang, Hongsheng; He, Runtao; Booth, Stephanie; Balachandran, Aru; Li, Xuguang

    2008-06-01

    Detection of the abnormal or the pathogenic form of prion protein (PrP(Sc)) by Western blot (WB) is challenging, especially, for samples derived from cell cultures that contain low levels of PrP(Sc). A variety of PrP(Sc) concentration methods have been reported with various PrP(Sc) recovery efficiencies. Ultracentrifugation is one of the methods used frequently to enrich the pathogenic form of PrP(Sc) prior to WB analyses. The resulting PrP(Sc) pellet is extremely insoluble and often requires sonication to be dissolved, potentially generating aerosols. We modified the common protein-precipitating protocol using trichloroacetic acid to concentrate PrP(Sc) by slow-speed centrifugation, followed by solubilization of the pellets with 6 mol/L urea prior to sodium dodecyl sulphate -- polyacrylamide gel electrophoresis and WB analyses. Comparative studies suggest this simple trichloroacetic acid protocol was more effective in enriching PrP(Sc) presented in cell cultures and brain homogenates than other reported protein-precipitating methods. Furthermore, incorporation of the urea treatment step to dissolve the precipitated PrP(Sc) pellets helped to reduce the infectivity of PrP(Sc). PMID:18535632

  8. The diagnosis of proventricular dilatation disease: use of a Western blot assay to detect antibodies against avian Borna virus.

    PubMed

    Villanueva, Itamar; Gray, Patricia; Mirhosseini, Negin; Payne, Susan; Hoppes, Sharman; Honkavuori, Kirsi S; Briese, Thomas; Turner, Debra; Tizard, Ian

    2010-07-14

    Avian Borna virus (ABV) has recently been shown to be the causal agent of proventricular dilatation disease (PDD) a lethal neurologic disease of captive psittacines and other birds. An immunoblot assay was used to detect the presence of antibodies against avian Borna virus in the serum of affected birds. A lysate from ABV-infected duck embryo fibroblasts served as a source of antigen. The assay was used to test for the presence of antibodies to ABV in 117 birds. Thirty of these birds had biopsy or necropsy-confirmed proventricular dilatation disease (PDD), while the remaining 87 birds were apparently healthy or were suffering from diseases other than PDD. Sera from 27 of the 30 PDD cases (90%) contained antibodies to ABV. Seventy-three (84%) of the apparently "healthy" birds were seronegative. Additionally, sera from seven macaws and one parrot trapped in the Peruvian Amazon were seronegative. Positive sera recognized the bornaviral nucleoprotein (N-protein). While the presence of antibodies to ABV largely corresponded with the development of clinical PDD, 14 apparently healthy normal birds possessed detectable antibodies to ABV. The existence of a carrier state was confirmed when 13 of 15 apparently healthy cockatiels were shown by PCR to have detectable ABV RNA in their feces. Western blot assays may be of significant assistance in diagnosing proventricular dilatation disease. Many apparently healthy birds may however be seronegative while, at the same time, shedding ABV in their feces. PMID:20036080

  9. Exposure to Sarcocystis spp. in horses from Spain determined by Western blot analysis using Sarcocystis neurona merozoites as heterologous antigen.

    PubMed

    Arias, M; Yeargan, M; Francisco, I; Dangoudoubiyam, S; Becerra, P; Francisco, R; Sánchez-Andrade, R; Paz-Silva, A; Howe, D K

    2012-04-30

    Horses serve as an intermediate host for several species of Sarcocystis, all of which utilize canids as the definitive host. Sarcocystis spp. infection and formation of latent sarcocysts in horses often appears to be subclinical, but morbidity can occur, especially when the parasite burden is large. A serological survey was conducted to determine the presence of antibodies against Sarcocystis spp. in seemingly healthy horses from the Galicia region of Spain. Western blot analyses using Sarcocystis neurona merozoites as heterologous antigen suggested greater than 80% seroprevalance of Sarcocystis spp. in a sample set of 138 horses. The serum samples were further tested with enzyme-linked immunosorbent assays (ELISAs) based on recombinant S. neurona-specific surface antigens (rSnSAGs). As expected for horses from the Eastern Hemisphere, less than 4% of the serum samples were positive when analyzed with either the rSnSAG2 or the rSnSAG4/3 ELISAs. An additional 246 horses were tested using the rSnSAG2 ELISA, which revealed that less than 3% of the 384 samples were seropositive. Collectively, the results of this serologic study suggested that a large proportion of horses from this region of Spain are exposed to Sarcocystis spp. Furthermore, the anti-Sarcocystis seroreactivity in these European horses could be clearly distinguished from anti-S. neurona antibodies using the rSnSAG2 and rSnSAG4/3 ELISAs. PMID:22019182

  10. Lectin staining and Western blot data showing differential sialylation of nutrient-deprived cancer cells to sialic acid supplementation

    PubMed Central

    Badr, Haitham A.; AlSadek, Dina M.M.; Mathew, Mohit P.; Li, Chen-Zhong; Djansugurova, Leyla B.; Yarema, Kevin J.; Ahmed, Hafiz

    2015-01-01

    This report provides data that are specifically related to the differential sialylation of nutrient deprived breast cancer cells to sialic acid supplementation in support of the research article entitled, “Nutrient-deprived cancer cells preferentially use sialic acid to maintain cell surface glycosylation" [1]. Particularly, breast cancer cells, when supplemented with sialic acid under nutrient deprivation, display sialylated glycans at the cell surface, but non-malignant mammary cells show sialylated glycans intracellularly. The impact of sialic acid supplementation under nutrient deprivation was demonstrated by measuring levels of expression and sialylation of two markers, EGFR1 and MUC1. This Data in Brief article complements the main manuscript by providing detailed instructions and representative results for cell-level imaging and Western blot analyses of changes in sialylation during nutrient deprivation and sialic acid supplementation. These methods can be readily generalized for the study of many types of glycosylation and various glycoprotein markers through the appropriate selection of fluorescently-labeled lectins. PMID:26629491

  11. Far-western blotting as a solution to the non-specificity of the anti-erythropoietin receptor antibody

    PubMed Central

    Fecková, Barbora; Kimáková, Patrícia; Ilkovičová, Lenka; Szentpéteriová, Erika; Debeljak, Nataša; Solárová, Zuzana; Sačková, Veronika; Šemeláková, Martina; Bhide, Mangesh; Solár, Peter

    2016-01-01

    The erythropoietin receptor (EpoR) is a member of the cytokine receptor family. The interaction between erythropoietin (Epo) and EpoR is important for the production and maturation of erythroid cells, resulting in the stimulation of hematopoiesis. The fact that EpoR was also detected in neoplastic cells has opened the question about the relevance of anemia treatment with recombinant Epo in cancer patients. Numerous studies have reported pro-stimulating and anti-apoptotic effects of Epo in cancer cells, thus demonstrating EpoR functionality in these cells. By contrast, a previous study claims the absence of EpoR in tumor cells. This apparent discrepancy is based, according to certain authors, on the use of non-specific anti-EpoR antibodies. With the aim of bypassing the direct detection of EpoR with an anti-EpoR antibody, the present authors propose a far-western blot methodology, which in addition, confirms the interaction of Epo with EpoR. Applying this technique, the presence of EpoR and its interaction with Epo in human ovarian adenocarcinoma A2780 and normal human umbilical vein endothelial cells was confirmed. Furthermore, modified immunoprecipitation of EpoR followed by matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry analysis confirmed a 57 kDa protein as a human Epo-interacting protein in both cell lines. PMID:27446474

  12. Simultaneous direct identification of genital microorganisms in voided urine using multiplex PCR-based reverse line blot assays.

    PubMed

    McKechnie, Michelle L; Kong, Fanrong; Gilbert, Gwendolyn L

    2013-01-01

    Our aim was to develop and evaluate sensitive methods that would allow simultaneous direct identification of multiple potential pathogens in clinical specimens for diagnosis and epidemiological studies, using a multiplex PCR-based reverse line blot assay. We have previously developed assays suitable for detection of bacterial respiratory and systemic pathogens. In this chapter we describe, in detail, a method developed to identify 14 genital microorganisms, for use in epidemiological studies of genital infection or colonization, using first voided urine specimens. The 14 urogenital pathogens or putative pathogens studied were Trichomonas vaginalis, Streptococcus pneumoniae, Neisseria gonorrhoeae, N. meningitidis, Chlamydia trachomatis, Ureaplasma parvum, U. urealyticum, Mycoplasma hominis, M. genitalium, Gardnerella vaginalis, Haemophilus influenzae, herpes simplex virus 1 and 2, and adenovirus. Two species-specific primer pairs and probes were designed for each target. The method was validated using a reference strain or a well-characterized clinical isolate of each target organism. In a clinical study among men attending sexual health clinics in Sydney, we used the assay to compare rates of detection of the 14 organisms in men with urethritis with those in asymptomatic controls and found the method to be sensitive, specific, convenient, and relatively inexpensive. PMID:23104293

  13. A Modified Quantum Dot-Based Dot Blot Assay for Rapid Detection of Fish Pathogen Vibrio anguillarum.

    PubMed

    Zhang, Yang; Xiao, Jingfan; Wang, Qiyao; Zhang, Yuanxing

    2016-08-28

    Vibrio anguillarum, a devastating pathogen causing vibriosis among marine fish, is prevailing in worldwide fishery industries and accounts for grievous economic losses. Therefore, a rapid on-site detection and diagnostic technique for this pathogen is in urgent need. In this study, two mouse monoclonal antibodies (MAbs) against V. anguillarum, 6B3-C5 and 8G3-B5, were generated by using hybridoma technology and their isotypes were characterized. MAb 6B3-C5 was chosen as the detector antibody and conjugated with quantum dots. Based on MAb 6B3- C5 labeled with quantum dots, a modified dot blot assay was developed for the on-site determination of V. anguillarum. It was found that the method had no cross-reactivity with other than V. anguillarum bacteria. The detection limit (LOD) for V. anguillarum was 1 × 10(3) CFU/ml in cultured bacterial suspension samples, which was a 100-fold higher sensitivity than the reported colloidal gold immunochromatographic test strip. When V. anguillarum was mixed with turbot tissue homogenates, the LOD was 1 × 10(3) CFU/ml, suggesting that tissue homogenates did not influence the detection capabilities. Preenrichment with the tissue homogenates for 12 h could raise the LOD up to 1 × 10(2) CFU/ml, confirming the reliability of the method. PMID:27116991

  14. Geology of the Ivanhoe Hg-Au district, northern Nevada: Influence of Miocene volcanism, lakes, and active faulting on epithermal mineralization

    USGS Publications Warehouse

    Wallace, A.R.

    2003-01-01

    The mercury-gold deposits of the Ivanhoe mining district in northern Nevada formed when middle Miocene rhyolitic volcanism and high-angle faulting disrupted a shallow lacustrine environment. Sinter and replacement mercury deposits formed at and near the paleosurface, and disseminated gold deposits and high-grade gold-silver veins formed beneath the hot spring deposits. The lacustrine environment provided abundant meteoric water; the rhyolites heated the water; and the faults, flow units, and lakebeds provided fluid pathways for the hydrothermal fluids. A shallow lake began to develop in the Ivanhoe area about 16.5 Ma. The lake progressively expanded and covered the entire area with fine-grained lacustrine sediments. Lacustrine sedimentation continued to at least 14.4 Ma, and periodic fluctuations in the size and extent of the lake may have been responses to both climate and nearby volcanism. The eruption of rhyolite and andesite flows and domes periodically disrupted the lacustrine environment and produced interfingered flows and lake sediments. The major pulse of rhyolitic volcanism took place between 15.16 ?? 0.05 and 14.92 ?? 0.05 Ma. High-angle faulting began in the basement about 15.2 Ma, penetrated to and disrupted the paleosurface after 15.10 ?? 0.06 Ma, and largely ceased by 14.92 ?? 0.05 Ma. Ground motion related to both faulting and volcanism created debris flows and soft-sediment deformation in the lakebeds. Mercury-gold mineralization was coeval with rhyolite volcanism and high-angle faulting, and it took place about 15.2 to 14.9 Ma. At and near the paleosurface, hydrothermal fluids migrated through tuffaceous sediments above relatively impermeable volcanic and Paleozoic units, creating chalcedonic, cinnabar-bearing replacement bodies and sinters. Disseminated gold was deposited in sedimentary and volcanic rocks beneath the mercury deposits, although the hydrologic path between the two ore types is unclear. Higher-grade gold-silver deposits formed in

  15. COPE Coastal ocean probe experiment Northern Oregon Coast 14-16 September 1995: Test Operations Report summary of Lawrence Livermore National Laboratory activities

    SciTech Connect

    Mantrom, D.D.; Miller, M.G.

    1995-10-01

    Operations involving Lawrence Livermore National Laboratory (LLNL) assets associated with a field experiment named COPE (Coastal Ocean Probe Experiment) are described. The lead organization responsible for the planning and conduct of COPE is NOAA/ETL headquartered in Boulder, Colorado. This experiment was conducted off the coast of Northern Oregon during September-October 1995. The primary measurements involve radars and other imaging microwave sensors imaging surface effects associated with natural internal waves which are abundant off the Oregon coast in the late summer and early fall. In-water, surface, and above- water environmental sensors were fielded by ETL and their contractors on the FLIP platform moored 13 miles offshore and elsewhere to characterize the environmental conditions and help interpret various features in the imagery. LLNL`s Imaging and Detection Program has taken advantage of this unique site and suite of ground-truth measurements to collect radar image data over a three-day period (14-16 September 1995) with our Airborne Experimental Test Bed (AETB) and its X-band, HH-polarization synthetic aperture radar (SAR) as a piggyback to the primary COPE data collection. This report documents test operations during this three-day data collection involving the AETB/SAR from a LLNL perspective. A total of 42 SAR images were collected at grazing angles of 8{degrees}, 20{degrees}, and 45{degrees}. From all indications during data collection, data quality appears good for about 75 percent of the passes. Strong internal waves were observed each day in calm to light wind conditions. ETL`s hillside dual-polarization X-band and Ka-band real aperture radars recorded data simultaneous with the AETB SAR. The presence of other airborne platforms and low cloud cover limited the AETB aircraft`s ability to operate at low altitude. Limited sea-truth data was collected onboard FLIP.

  16. Northern Arizona Volcanoes

    NASA Technical Reports Server (NTRS)

    2006-01-01

    Northern Arizona is best known for the Grand Canyon. Less widely known are the hundreds of geologically young volcanoes, at least one of which buried the homes of local residents. San Francisco Mtn., a truncated stratovolcano at 3887 meters, was once a much taller structure (about 4900 meters) before it exploded some 400,000 years ago a la Mt. St. Helens. The young cinder cone field to its east includes Sunset Crater, that erupted in 1064 and buried Native American homes. This ASTER perspective was created by draping ASTER image data over topographic data from the U.S. Geological Survey National Elevation Data.

    With its 14 spectral bands from the visible to the thermal infrared wavelength region, and its high spatial resolution of 15 to 90 meters (about 50 to 300 feet), ASTER images Earth to map and monitor the changing surface of our planet.

    ASTER is one of five Earth-observing instruments launched December 18, 1999, on NASA's Terra satellite. The instrument was built by Japan's Ministry of Economy, Trade and Industry. A joint U.S./Japan science team is responsible for validation and calibration of the instrument and the data products.

    The broad spectral coverage and high spectral resolution of ASTER provides scientists in numerous disciplines with critical information for surface mapping, and monitoring of dynamic conditions and temporal change. Example applications are: monitoring glacial advances and retreats; monitoring potentially active volcanoes; identifying crop stress; determining cloud morphology and physical properties; wetlands evaluation; thermal pollution monitoring; coral reef degradation; surface temperature mapping of soils and geology; and measuring surface heat balance.

    The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

    Size: 20.4 by 24.6 kilometers (12.6 by 15.2 miles) Location: 35.3 degrees North latitude, 111

  17. Crustal structure of northern California

    NASA Astrophysics Data System (ADS)

    Godfrey, Nicola Jane

    This thesis presents work from two regions in northern California, using seismic data collected during the Mendocino Triple Junction Experiment (1993 and 1994), and USGS data collected in 1977. Much of California geology records subduction processes active during much of the Mesozoic. About 29 Ma ago, the East Pacific Rise began interacting with the California subduction margin, and two triple junctions formed. One moved north and one moved south, with the San Andreas transform system between them. The northern triple junction, the Mendocino triple junction, is currently situated close to Cape Mendocino, northern California. Northern California geology now has the added complication of processes associated with the northward moving triple junction and lengthening San Andreas fault system. Chapters 1 and 2 focus on the Great Valley, a forearc basin associated with Mesozoic subduction. The three major parts of the subduction system are the magmatic arc (Sierra Nevada batholith), forearc basin (Great Valley basin) and accretionary prism (Franciscan complex). Chapter 1 presents evidence from seismic data, for a complete ophiolitic sequence, including an unserpentinized mantle section (velocities of 8.1 km.ssp{-1} at 5-18 km depth) beneath the northernmost Great Valley. A combination velocity/density model shows the ophiolite is underlain by low-density material associated with the Sierra Nevada. Chapter 2 presents geophysical models, (seismic reflection, refraction, gravity and magnetic models) published by different authors over the last 14 years from the entire Great Valley, to explore the nature of the Great Valley ophiolite along the length of the forearc basin. Chapter 3 focuses offshore, west of the San Andreas fault, on an anomalous piece of crust, the Vizcaino block, situated immediately southwest of the Mendocino triple junction. This chapter discusses the crustal thickness of the Vizcaino block, the nature of its accretionary prism basement, and deformation

  18. Factors influencing benthic bacterial abundance, biomass, and activity on the northern continental margin and deep basin of the Gulf of Mexico

    NASA Astrophysics Data System (ADS)

    Deming, Jody W.; Carpenter, Shelly D.

    2008-12-01

    As part of a larger project on the deep benthos of the Gulf of Mexico, an extensive data set on benthic bacterial abundance ( n>750), supplemented with cell-size and rate measurements, was acquired from 51 sites across a depth range of 212-3732 m on the northern continental slope and deep basin during the years 2000, 2001, and 2002. Bacterial abundance, determined by epifluorescence microscopy, was examined region-wide as a function of spatial and temporal variables, while subsets of the data were examined for sediment-based chemical or mineralogical correlates according to the availability of collaborative data sets. In the latter case, depth of oxygen penetration helped to explain bacterial depth profiles into the sediment, but only porewater DOC correlated significantly (inversely) with bacterial abundance ( p<0.05, n=24). Other (positive) correlations were detected with TOC, C/N ratios, and % sand when the analysis was restricted to data from the easternmost stations ( p<0.05, n=9-12). Region-wide, neither surface bacterial abundance (3.30-16.8×10 8 bacteria cm -3 in 0-1 cm and 4-5 cm strata) nor depth-integrated abundance (4.84-17.5×10 13 bacteria m -2, 0-15 cm) could be explained by water depth, station location, sampling year, or vertical POC flux. In contrast, depth-integrated bacterial biomass, derived from measured cell sizes of 0.027-0.072 μm 3, declined significantly with station depth ( p<0.001, n=56). Steeper declines in biomass were observed for the cross-slope transects (when unusual topographic sites and abyssal stations were excluded). The importance of resource changes with depth was supported by the positive relationship observed between bacterial biomass and vertical POC flux, derived from measures of overlying productivity, a relationship that remained significant when depth was held constant (partial correlation analysis, p<0.05, df=50). Whole-sediment incubation experiments under simulated in situ conditions, using 3H-thymidine or 14C

  19. Evaluation of ELISA coupled with Western blot as a surveillance tool for Trichinella infection in wild boar (Sus scrofa).

    PubMed

    Cuttell, Leigh; Gómez-Morales, Maria Angeles; Cookson, Beth; Adams, Peter J; Reid, Simon A; Vanderlinde, Paul B; Jackson, Louise A; Gray, C; Traub, Rebecca J

    2014-01-31

    Trichinella surveillance in wildlife relies on muscle digestion of large samples which are logistically difficult to store and transport in remote and tropical regions as well as labour-intensive to process. Serological methods such as enzyme-linked immunosorbent assays (ELISAs) offer rapid, cost-effective alternatives for surveillance but should be paired with additional tests because of the high false-positive rates encountered in wildlife. We investigated the utility of ELISAs coupled with Western blot (WB) in providing evidence of Trichinella exposure or infection in wild boar. Serum samples were collected from 673 wild boar from a high- and low-risk region for Trichinella introduction within mainland Australia, which is considered Trichinella-free. Sera were examined using both an 'in-house' and a commercially available indirect-ELISA that used excretory-secretory (E/S) antigens. Cut-off values for positive results were determined using sera from the low-risk population. All wild boar from the high-risk region (352) and 139/321 (43.3%) of the wild boar from the low-risk region were tested by artificial digestion. Testing by Western blot using E/S antigens, and a Trichinella-specific real-time PCR was also carried out on all ELISA-positive samples. The two ELISAs correctly classified all positive controls as well as one naturally infected wild boar from Gabba Island in the Torres Strait. In both the high- and low-risk populations, the ELISA results showed substantial agreement (k-value=0.66) that increased to very good (k-value=0.82) when WB-positive only samples were compared. The results of testing sera collected from the Australian mainland showed the Trichinella seroprevalence was 3.5% (95% C.I. 0.0-8.0) and 2.3% (95% C.I. 0.0-5.6) using the in-house and commercial ELISA coupled with WB respectively. These estimates were significantly higher (P<0.05) than the artificial digestion estimate of 0.0% (95% C.I. 0.0-1.1). Real-time PCR testing of muscle from

  20. State-of-the-art housekeeping proteins for quantitative western blotting: Revisiting the first draft of the human proteome.

    PubMed

    Lee, Hyun-Gwan; Jo, Jihoon; Hong, Hyun-Hee; Kim, Kee K; Park, Joong-Ki; Cho, Sung-Jin; Park, Chungoo

    2016-07-01

    Western blotting (WB) analysis is the most popular and widely used methodology for protein detection and characterization over recent decades. In accordance with the advancement of the technologies for the acquisition of WB signals, a quantitative value is used to present the abundance of target proteins in a complex sample, thereby requiring the use of specific proteins as internal references that represent total proteins. Heretofore, proteins encoded by housekeeping genes such as GAPDH, β-tubulin and β-actin have been commonly used as loading controls without any hesitation because their mRNA expression levels tend to be high and constant in many different cells and tissues. Experimentally, however, some of the housekeeping reference proteins are often displayed with inconsistent expression levels in both homogeneous and heterogeneous tissues, and, in terms of mRNA levels, they have a weak correlation to the abundance of proteins. To estimate accurate, reliable, and reproducible protein quantifications, it is crucial to define appropriate reference controls. For this paper, we explored the recently released large-scale, human proteomic database ProteomicsDB including 16 857 liquid chromatography tandem-mass-spectrometry data from 27 human tissues, and suggest 20 ubiquitously- and constitutively-expressed, putative internal-reference controls for the quantification of differential protein expressions. Intriguingly, the most commonly used, known housekeeping genes were entirely excluded in our newly defined candidates. Although the applications of the candidates under many different biological conditions and in other organisms are yet to be empirically verified, we propose reliable, potential loading controls for a WB analysis in this paper. PMID:27125885

  1. Evaluation of a Western Blot and ELISA for the detection of anti-Trichinella-IgG in pig sera.

    PubMed

    Nöckler, K; Reckinger, S; Broglia, A; Mayer-Scholl, A; Bahn, P

    2009-08-26

    Human trichinellosis is a foodborne disease caused by ingestion of infective Trichinella muscle larvae via pork or meat of other food animals which are susceptible to this zoonotic parasite. There are new approaches for a risk-oriented meat inspection for Trichinella in pigs which are accompanied by monitoring programmes on herd level to control freedom from this parasite. For this purpose, testing schemes utilizing serological tests with a high sensitivity and specificity are required. This study aimed at the evaluation of an ELISA and a Western Blot (WB) for the detection of anti-Trichinella-IgG in terms of sensitivity and specificity taking results of artificial digestion as gold standard. For this purpose, 144 field sera from pigs confirmed as Trichinella-free as well as 159 sera from pigs experimentally infected with T. spiralis (123), T. britovi (19) or T. pseudospiralis (17) were examined by ELISA (excretory-secretory antigen) and WB (crude worm extract). Sera from pigs experimentally infected with four other nematode species were included to investigate the cross-reactivity of the antigen used in the WB. For all Trichinella-positive pig sera, band pattern profiles were identified in the WB and results were analysed in relation to ELISA OD% values. Testing of pig sera revealed a sensitivity of 96.8% for the ELISA and 98.1% for the WB whereas the methods showed a specificity of 97.9 and 100%, respectively. WB analysis of Trichinella-positive pig sera revealed five specific band patterns of 43, 47, 61, 66, and 102 kDa of which the 43 kDa protein was identified as the predominant antigen. The frequency of the band pattern profile was irrespective of the dose and the period of infection as well as the Trichinella species investigated. In conclusion, monitoring in swine farms for Trichinella antibodies should be based on screening pig sera by means of ELISA followed by confirmatory testing through WB analysis. PMID:19473770

  2. Molecular mass dependence of hyaluronan detection by sandwich ELISA-like assay and membrane blotting using biotinylated hyaluronan binding protein

    PubMed Central

    Yuan, Han; Tank, Mihir; Alsofyani, Abeer; Shah, Naman; Talati, Nishant; LoBello, Jaclyn C; Kim, Jin Ryoun; Oonuki, Yoji; de la Motte, Carol A; Cowman, Mary K

    2013-01-01

    Hyaluronan (HA) is widely detected in biological samples and its concentration is most commonly determined by the use of a labeled specific HA binding protein (aggrecan G1-IGD-G2, HABP), employing membrane blotting and sandwich enzyme-linked immunosorbent assay (ELISA)-like methods. However, the detected signal intensity or the quantified value obtained by using these surface-based methods is related to the molecular mass (M) of HA, especially for HA in the low M range below ∼150 kDa. At the same mass or mass concentration, higher M HA gives a higher signal than lower M HA. We have experimentally determined the quantitative relationship between the M of HA (in the range 20–150 kDa) and the relative signal intensity in comparison with a standard HA, in a sandwich ELISA-like assay. An M-dependent signal correction factor (SCF) was calculated and used to correct the signal intensity, so that the corrected concentration value would more accurately reflect the true HA concentration in solution. The SCF for polydisperse low M HA was also calculated and compared with experimental results. When the molecular mass distribution of an HA sample is determined by a method such as gel electrophoresis, then its appropriately averaged SCF can be calculated and used to correct the signal in sandwich ELISA to obtain a more accurate concentration estimation. The correction method works for HA with M between ∼150 and 20 kDa, but lower M HA is too poorly detected for useful analysis. The physical basis of the M-dependent detection is proposed to be the increase in detector-accessible fraction of each surface-bound molecule as M increases. PMID:23964097

  3. Reduction of telomeric repeats as a possible predictor for development of hepatocellular carcinoma: convenient evaluation by slot-blot analysis.

    PubMed

    Isokawa, O; Suda, T; Aoyagi, Y; Kawai, H; Yokota, T; Takahashi, T; Tsukada, K; Shimizu, T; Mori, S; Abe, Y; Suzuki, Y; Nomoto, M; Mita, Y; Yanagi, M; Igarashi, H; Asakura, H

    1999-08-01

    Hepatocellular carcinoma (HCC) mainly arises from the liver with chronic inflammation. Because telomere reduction reflects replicative history in somatic cells, we analyzed the possibility that liver tissues surrounding HCC consist of the cells carrying substantial reduction of telomere. We studied 20 HCC and surrounding noncancerous liver tissues (SL) obtained by surgical resection, and 10 laparoscopically obtained needle biopsy specimens of the liver with chronic inflammation including no overt HCC (CI). Five liver tissues without chronic liver diseases (ND) were also examined. Extracted genomic DNAs were blotted on a nylon membrane, and probed at first with radio-labeled d(TTAGGG)(3) and reprobed with radio-labeled d(CCT)(7). The intensity caused by d(TTAGGG)(3) was divided by that of d(CCT)(7). The ratio was defined as telomeric repeats content (TC). Dilution experiments reproducibly revealed almost the same TC. The reduction rate of telomere length through aging estimated by regression analysis of TC was 0.62% per year. Concomitant analyses of TC and average telomere length revealed that both values were significantly correlated (r =.45; P =.009). To compare TC in the liver with respect to chronic inflammation, the value was divided by TC in peripheral blood leukocytes (PBL) from the same donor. The ratio was defined as relative TC (RTC). There was a statistically significant decrease of RTC in CI compared with that in ND (P =.03). Furthermore, RTC in SL was significantly lower than that in CI (P =.0001). These observations suggest that RTC value in liver tissues may digitally indicate a replicative history of hepatocytes under chronic inflammation, and a risk of HCC development. PMID:10421648

  4. Distinctive western blot antibody patterns induced by infection of mice with individual strains of the Mycobacterium avium complex.

    PubMed Central

    Elsaghier, A; Nolan, A; Allen, B; Ivanyi, J

    1992-01-01

    Systemic infection of mice with organisms of the Mycobacterium avium complex (MAC) induced antibody responses, characteristic for each of the three tested individual strains. The influence of host genetic factors was reflected up to 3 months after infection by the finding of generally oligobanded and multibanded Western blot patterns in C57B1/6 and BALB/c mice, respectively. Nevertheless, more bands developed at 6 months in C57BL/6 mice. The response to three antigens of 18,000, 38,000 and 24,000 MW was analysed in greater detail. Antibodies to a protease-resistant 18,000 MW band produced only by BALB/c mice were either strain specific, following infection with M. avium, strain Maa-B2, or cross-reactive within MAC, following infection with M. avium strain Maa-A6 and M. paratuberculosis, strain Map-203. Another protease-resistant antigen of 38,000 MW was immunogenic only in Maa-B2 infected mice. This constituent was found to be related to the protease-sensitive antigen of corresponding molecular weight from M. tuberculosis. Two 24,000 MW proteins of M. paratuberculosis were separated by two-dimensional gel electrophoresis: antibodies to the anodic band were induced by Map-203 infection, whilst the cathodic band was revealed by heteroclitic antibodies from Maa-B2-infected mice. The latter antigen is apparently expressed during in vivo replication, but not during in vitro culture of Maa-B2 bacteria. We generally conclude, that the selective antibody patterns after live infection, could be attributed to differences in the release of native antigens within mycobacterial lesions. In view of a high degree of species specificity, some of the immunogenic constituents identified may also be useful for serodiagnostic application. Images Figure 2 Figure 3 Figure 4 Figure 5 PMID:1526646

  5. Northern Meridiani Scene

    NASA Technical Reports Server (NTRS)

    2004-01-01

    19 November 2004 This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows eroded remnants of layered sedimentary rock in northern Sinus Meridiani. The layering is best seen in the circular feature at the center/right, which is an old meteor impact crater that was once filled and buried beneath the sedimentary rocks, then later exhumed and eroded to its present state. All of the sedimentary rocks exposed in this portion of northern Sinus Meridiani are probably older than the rocks in central Sinus Meridiani that have been examined this year by the Mars Exploration Rover, Opportunity. Like the rocks visited by the rover, these, too, may contain detailed clues regarding a wetter Mars in the distant past. These landforms are located near 6.0oN, 2.0oW. The image covers an area approximately 3 km (1.9 mi) wide. Sunlight illuminates the scene from the left/lower left.

  6. Development of Double Eastern Blotting for Major Licorice Components, Glycyrrhizin and Liquiritin for Chemical Quality Control of Licorice Using anti-Glycyrrhizin and anti-Liquiritin Monoclonal Antibodies.

    PubMed

    Fujii, Shunsuke; Morinaga, Osamu; Uto, Takuhiro; Nomura, Shuichi; Shoyama, Yukihiro

    2016-02-10

    Licorice is utilized in various food industries around the world for seasoning agents, confectioneries, drinks, and functional foods. Glycyrrhizin (GL) and liquiritin (Liq) are major quality control chemical markers of licorice that have multifunctional bioactivities. Chemical quality control of licorice is important because its component profiles change depending environmental factors (climate, soil condition, and water deficit) and differences between species. Double eastern blotting using anti-GL and anti-Liq monoclonal antibodies was developed for more convenient, rapid, and specific quality control analysis of GL and Liq, respectively. Moreover, double eastern blotting was applied to investigate the immunohistochemical distributions of GL and Liq in the root of fresh licorice; the localization of both components was then clarified visually. This double eastern blotting technique for GL and Liq may serve as a powerful approach for visually determining the chemical quality of licorice. PMID:26765784

  7. Northern Plains Patterns

    NASA Technical Reports Server (NTRS)

    2003-01-01

    MGS MOC Release No. MOC2-513, 14 October 2003

    Patterns are common on the northern plains of Mars. Like their terrestrial counterparts in places like Siberia, Alaska, and northern Canada, patterned ground on Mars might be an indicator of the presence of ground ice. Whether it is true that the patterns on Mars are related to ground ice and whether the ice is still present beneath the martian surface are unknown. This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) picture shows an example of patterned ground on the martian northern plains near 72.4oN, 252.6oW. The dark dots and lines are low mounds and chains of mounds. The circular feature near the center of the image is the location of a buried meteor impact crater; its presence today is marked only by the dark boulders on its rim and ejecta blanket that have managed to remain uncovered at the martian surface. The area shown is 3 km (1.9 mi) wide and illuminated by sunlight from the lower left.

  8. Climate impacts on northern Canada: regional background.

    PubMed

    Prowse, Terry D; Furgal, Chris; Bonsal, Barrie R; Peters, Daniel L

    2009-07-01

    Understanding the implications of climate change on northern Canada requires a background about the size and diversity of its human and biogeophysical systems. Occupying an area of almost 40% of Canada, with one-third of this contained in Arctic islands, Canada's northern territories consist of a diversity of physical environments unrivaled around the circumpolar north. Major ecozones composed of a range of landforms, climate, vegetation, and wildlife include: Arctic, boreal and taiga cordillera; boreal and taiga plains; taiga shield; and northern and southern Arctic. Although generally characterized by a cold climate, there is an enormous range in air temperature with mean annual values being as high as -5 degrees C in the south to as low as -20 degrees C in the high Arctic islands. A similar contrast characterizes precipitation, which can be > 700 mm y(-1) in some southern alpine regions to as low as 50 mm y(-1) over islands of the high Arctic. Major freshwater resources are found within most northern ecozones, varying from large glaciers or ice caps and lakes to extensive wetlands and peat lands. Most of the North's renewable water, however, is found within its major river networks and originates in more southerly headwaters. Ice covers characterize the freshwater systems for multiple months of the year while permafrost prevails in various forms, dominating the terrestrial landscape. The marine environment, which envelops the Canadian Arctic Archipelago, is dominated by seasonal to multiyear sea ice often several meters thick that plays a key role in the regional climate. Almost two-thirds of northern Canadian communities are located along coastlines with the entire population being just over 100 000. Most recent population growth has been dominated by an expansion of nonaboriginals, primarily the result of resource development and the growth of public administration. The economies of northern communities, however, remain quite mixed with traditional land

  9. [Social representations concerning dengue, dengue vectors, and control activities among residents of São Sebastião on the northern coast of São Paulo State, Brazil].

    PubMed

    Lefèvre, Ana Maria Cavalcanti; Ribeiro, Andressa Francisca; Marques, Gisela Rita de Alvarenga Monteiro; Serpa, Lígia Leandro Nunes; Lefèvre, Fernando

    2007-07-01

    This study sought to identify people's knowledge on dengue and its vector biology, aimed at promoting a communications channel between technical and lay reasoning in order to foster community involvement in dengue and dengue vector control activities. A survey was conducted in an Aedes aegypti-infested area with dengue transmission in São Sebastião on the northern coast of São Paulo State, Brazil. One hundred interviews were held, with five open questions on topics related to dengue and vector control. Collective Subject Discourse methodology was used in the analysis. People were not able to properly identify the kinds of accumulated water sources that serve as breeding places for mosquitoes and were unaware of the egg phase in vector development. There was inadequate awareness of vector biology and a need for greater government-community integration. Educational activities should incorporate the study results as insight for improving the social efficiency and efficacy of joint actions to fight dengue and control the mosquito vector. PMID:17572820

  10. Identification of recombinant human EPO variants in greyhound plasma and urine by ELISA, LC-MS/MS and western blotting: a comparative study.

    PubMed

    Timms, Mark; Steel, Rohan; Vine, John

    2016-02-01

    The recombinant human erythropoietins epoetin alfa (Eprex®), darbepoetin (Aranesp®) and methoxy polyethylene glycol-epoetin beta (Mircera®) were administered to greyhounds for 7, 10 and 14 days respectively. Blood and urine samples were collected and analysed for erythropoietin by ELISA, LC-MS/MS and western blotting. Limits of confirmation in plasma for western blotting and LC-MS/MS methods ranged from a low of 2.5mIU/mL, and closely matched the sensitivity of ELISA screening. PMID:26290355

  11. Characterization of biotin-labeled proteoglycans by electrophoretic separation on minigels and blotting onto nylon membranes prior and after enzymatic digestion.

    PubMed

    Stöcker, G; Lückge, J; Greiling, H; Wagener, C

    1989-06-01

    Biotinylated proteoglycans were separated by sodium dodecyl sulfate electrophoresis prior and after enzymatic digestion by glycan-specific enzymes using polyacrylamide minigels. The biotin-labeled compounds were blotted onto nylon membranes either by electrophoresis or by diffusion and detected by avidin-enzyme conjugates. The method allows the nonisotopic detection of native proteoglycans and core proteins. Proteoglycans can be visualized at protein amounts as low as 0.7 ng per lane. In comparison with sensitive protein stains, compounds of enzyme preparations do not interfere with bands corresponding to core proteins. Electrophoresis, blotting, and staining of up to 12 samples per gel are accomplished in less than 3 h. PMID:2505636

  12. [Potential activity of methane production in soil, peat, and lacustrine sediments and in the Robert Bourassa hydro-electric reservoir in northern Canada].

    PubMed

    Jugnia, Louis-B; Roy, Réal; Planas, Dolors; Lucotte, Marc; Greer, Charles W

    2005-01-01

    Flooding of land associated with the creation of reservoirs may increase, at least in the short term, methane flux to the atmosphere. To evaluate the potential contribution of such land use on methane production, field samples were studied in vitro for the potential activity of methanogenic bacteria in unflooded or flooded boreal forest soils, together with lacustrine sediments. From this comparative study, periodically flooded or flooded peats contribute more to methane production than do unflooded peats, soils, and natural lake sediment. The intensity and temporal changes in the activity of methanogenic archaea in the different systems depended on a combination of environmental factors, such as the amount and quality of organic carbon, the water level, and the concentration of oxidizing ions (SO42-, Fe3+). PMID:15782237

  13. Mud volcanism as an indicator of late to neopleistocene-holocene activity of the Chilik-Kemin fault, Yli depression, Northern Tien Shan

    NASA Astrophysics Data System (ADS)

    Deev, E. V.; Kokh, S. N.; Sokol, E. V.; Zol'nikov, I. D.; Panov, V. S.

    2014-11-01

    It is revealed that the Altyn-Emel mud volcanic field (43°52'56″ N, 79°06'31″ E) in the Yli depression (Dzharkent trough) is structurally linked to the northeastern end of the Chilik-Kemin deep fault. The mud volcano is related to hydrocarbon-rich gases (including methane) and pressure artesian mineralized thermal waters, which uplifted to the surface along the fault zone. It is suggested that the earthquakes with M≤ 5 related both to the Chilik-Kemin fault and other seismic generating structures intensified the mud volcanic activity. In some cases, the eruptions were accompanied by the short-lived ignition of hydrocarbon gases and formation of the Na-rich paralavas. The mud volcanism of the Altyn-Emel field has been manifested during the last 15-20 k.a., and, consequently, the northeastern part of the Chilik-Kemin fault is an active structure.

  14. Seasonal Variation in Soil Microbial Biomass, Bacterial Community Composition and Extracellular Enzyme Activity in Relation to Soil Respiration in a Northern Great Plains Grassland

    NASA Astrophysics Data System (ADS)

    Wilton, E.; Flanagan, L. B.

    2014-12-01

    Soil respiration rate is affected by seasonal changes in temperature and moisture, but is this a direct effect on soil metabolism or an indirect effect caused by changes in microbial biomass, bacterial community composition and substrate availability? In order to address this question, we compared continuous measurements of soil and plant CO2 exchange made with an automatic chamber system to analyses conducted on replicate soil samples collected on four dates during June-August. Microbial biomass was estimated from substrate-induced respiration rate, bacterial community composition was determined by 16S rRNA amplicon pyrosequencing, and β-1,4-N-acetylglucosaminidase (NAGase) and phenol oxidase enzyme activities were assayed fluorometrically or by absorbance measurements, respectively. Soil microbial biomass declined from June to August in strong correlation with a progressive decline in soil moisture during this time period. Soil bacterial species richness and alpha diversity showed no significant seasonal change. However, bacterial community composition showed a progressive shift over time as measured by Bray-Curtis dissimilarity. In particular, the change in community composition was associated with increasing relative abundance in the alpha and delta classes, and declining abundance of the beta and gamma classes of the Proteobacteria phylum during June-August. NAGase showed a progressive seasonal decline in potential activity that was correlated with microbial biomass and seasonal changes in soil moisture. In contrast, phenol oxidase showed highest potential activity in mid-July near the time of peak soil respiration and ecosystem photosynthesis, which may represent a time of high input of carbon exudates into the soil from plant roots. This input of exudates may stimulate the activity of phenol oxidase, a lignolytic enzyme involved in the breakdown of soil organic matter. These analyses indicated that seasonal change in soil respiration is a complex

  15. Reconstructing the ecological impacts of eight decades of mining, metallurgical, and municipal activities on a small boreal lake in northern Canada.

    PubMed

    Doig, Lorne E; Schiffer, Stephanie T; Liber, Karsten

    2015-07-01

    As a result of long-term metal mining and metallurgical activities, the sediment of Ross Lake (Flin Flon, MB, Canada) is highly contaminated with metals and other elements. Although the effluents likely were discharged into Ross Lake as early as the late 1920s, lake biophysical data were not collected until 1973, more than 4 decades after the onset of mining and municipal activities. The early influence of these activities on the ecology of Ross Lake is unknown, as are the effects of improvements to metallurgical effluent quality and discontinuation of municipal wastewater discharge into the lake's north basin. To address this knowledge gap, analyses typical of paleolimnological investigations were applied to cores of sediment collected in 2009 from the south basin of Ross Lake. Stratigraphic analyses of physicochemical sediment characteristics (e.g., the concentrations of metals and other elements, organic C, total N, and δ(13)C and δ(15)N values) and subfossil remains (diatoms, Chironomidae, Chaoborus, and Cladocera) were used to infer historical biological and chemical changes in Ross Lake. With the onset of mining activities, concentrations of various elements (e.g., As, Cr, Cu, Zn, and Se) increased dramatically in the sediment profile, eventually declining with improved tailings management. Nevertheless, concentrations of metals in recent sediments remain elevated compared with pre-industrial sediments. Constrained cluster analyses demonstrated distinct pre-industrial and postindustrial communities for both the diatoms and chironomids. The biodiversity of the postindustrial diatom assemblages were much reduced compared with the pre-industrial assemblages. The postindustrial chironomid assemblage was dominated by Chironomus and to a lesser extent by Procladius, suggesting that Ross Lake became a degraded environment. Abundances of Cladocera and Chaoborus were severely reduced in the postindustrial era, likely because of metals toxicity. Overall, improvements

  16. Northern hemisphere dust storms on Mars

    NASA Technical Reports Server (NTRS)

    James, P. B.

    1993-01-01

    Dust storms in the northern hemisphere of Mars appear to be less common than the more familiar southern hemisphere storms, and essentially, no activity north of about 30 latittude has been documented. The data are, however, subject to an observational bias because Mars is near aphelion during oppositions, which occur during the most likely seasons for dust activity in the north. The amount of dust activity in the northern hemisphere is clearly very relevant to the role of atmospheric transport in the dust cycle. The classic global storms that occur during spring in the southern hemisphere are observed to transport dust from sources in the southern hemisphere to sinks or temporary depositories in the north. The question of whether atmospheric transport can close the dust cycle, i.e., return the dust to the southern hemisphere sources on some timescale, is clearly relevant to the solution of the puzzle of how the dust storm cycle is modulated, i.e., why storms occur in some years but not in others. There are data that suggest that the spring/early summer season in the northern hemisphere of Mars during the year following the major 1977 storms observed by Viking was very dusty. A number of observations of the vicinity of the receding north polar cap showed clear evidence of substantial dust activity in the sub-Arctic region.

  17. Short-term planetary-scale interactions over the tropics and midlatitudes during northern winter. I - Contrasts between active and inactive periods

    NASA Technical Reports Server (NTRS)

    Chang, C.-P.; Lau, K. M.

    1982-01-01

    Objectively analyzed 200 mb winds of four winters are used to study the short-term (several days) teleconnections between planetary-scale circulation components over the monsoon region. The composited structures suggest that during very actively northeasterly monsoon (surge) periods, the midlatitude and tropical circulation components vary in a coherent way. The jet streak and local Hadley circulation over East Asia, the divergent flow over the maritime continent, and the equatorial Walker circulations over the Pacific and Indian Oceans all strengthen steadily, while the secondary jet streak over West Asia weakens. During inactive (break) periods the midlatitude circulation components all exhibit reversed changes, while the variations in the tropics are less coherent, although still showing reversed tendencies. The results basically verify the short-term teleconnection model proposed by Chang and Lau (1980), but more complex processes in the acceleration of the midlatitude jet streaks are indicated. In addition, the contrast between the very active and break monsoon periods suggests the relative importance of tropical versus midlatitudinal forcings in different regions of the monsoon circulation.

  18. Femtogram detection of cytokines in a direct dot-blot assay using SERS microspectroscopy and hydrophilically stabilized Au-Ag nanoshells.

    PubMed

    Wang, Yuling; Salehi, Mohammad; Schütz, Max; Schlücker, Sebastian

    2014-03-14

    Rapid parallel detection of two cytokines (IL-6 and IL-8) with femtogram sensitivity in a simple direct dot-blot assay is demonstrated. The microspectroscopic SERS acquisition scheme employs rationally designed, hydrophilically stabilized Au-Ag nanoshells as SERS labels, which are optimized for signal enhancement upon red laser excitation. PMID:24398564

  19. Resolution and identification of major peanut allergens using a combination of fluorescence two-dimensional differential gel electrophoresis, western blotting and Q-TOF mass spectrometry.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Peanut allergy is triggered by several proteins known as allergens. The matching resolution and identification of major peanut allergens in 2D protein maps, was accomplished by the use of fluorescence two-dimensional differential gel electrophoresis (2D DIGE), Western blotting and quadrupole time-of...

  20. Profile of the MP Diagnostics HTLV Blot 2.4 test: a supplemental assay for the confirmation and differentiation of antibodies to HTLV-1 and HTLV-2.

    PubMed

    Miller, Liane

    2016-01-01

    As the first US FDA-approved assay for supplemental HTLV testing, the MP Diagnostics HTLV Blot 2.4 is an effective and efficient method for confirming and differentiating HTLV type infection in repeatedly reactive samples. Novel and patented antigens added increased sensitivity in identifying specimens from infected individuals while differentiating those from uninfected individuals with false reactivity. PMID:26589659

  1. Fires in Northern Australia

    NASA Technical Reports Server (NTRS)

    2002-01-01

    Several fires were detected in Northern Australia by MODIS. The fires show up as red dots, superimposed on a surface reflectance product. The image also shows the Clarence Strait, which separates the mainland from Melville Island to the northwest and the smaller Bathurst Island to its west. The Strait connects the more confined, bowl-shaped Van Diemen Gulf to the Beagle Gulf. To the right of the image at the top is the Gulf of Carpentaria, which appears to be full of phytoplankton, as evidenced by the blue-green swirls in the waters

  2. Modelling the activation of a confined debris slide in Northern Calabria: the 28 January 2009 slope movement at San Benedetto Ullano

    NASA Astrophysics Data System (ADS)

    Capparelli, G.; Iaquinta, P.; Iovine, G.; Terranova, O.; Versace, P.

    2009-09-01

    Southern Italy was severely stricken by abundant rains during Autumn-Winter 2008/2009, with widespread geomorphic effects such as slope movements and erosive processes, floods, inundations of cultivated fields and urbanised sectors, and coastal instabilities. A large number of superficial landslides were triggered in Calabria up to the middle of January, damaging life lines, roads, urbanised areas and lands, mainly in the NW sector of the region. Further persistent rainfalls were recorded until the end of March, and several deeper phenomena also activated along the slopes threatening villages and main lifelines. More specifically, a large rainfall-induced debris slide started mobilizing on 28 January along the Eastern slope of the Coastal Chain, in the vicinity of San Benedetto Ullano (Cosenza province). The slope movement threatened the southern suburbs of the village, damaging the road to the cemetery and the provincial road to Marri. Thanks to a prompt detailed geomorphologic field survey (protracted for the entire period of activity), to recurrent hand-made measures of superficial displacements performed at a set of datum points by a team of volunteers, and a real-time control system of meteoric conditions and superficial displacements at a set of precision-extensometers, the evolution of the phenomenon was mapped up to the last days of April, when the movement practically stopped at the end of the rainy period. Based on the results of the above-mentioned control activities, a basic empirical reference framework of procedures could be defined, which allowed the Authorities concerned to better manage the phases of geo-hydrological crisis, by adopting suitable emergency measures. The preliminary geological model of the landslide and of the affected slope, which had to be defined in the first stages of mobilization based on the few available data, was progressively refined thanks to the results of a couple of explorative drillings, driven down to 40 meters below

  3. Long-term monthly statistics of the mid-latitude ionospheric E-layer peak electron density in the Northern geographic hemisphere during geomagnetically quiet and steadily low solar activity conditions

    NASA Astrophysics Data System (ADS)

    Pavlov, Anatoli; Pavlova, Nadezhda

    2016-07-01

    Long-term hourly values of the ionospheric E-layer peak electron density, NmE, measured during the time period of 1957-2014 by 4 mid-latitude ionosondes (Wallops Island, Boulder, de l'Ebre, and Rome) in the Northern geographic hemisphere were processed to select periods of geomagnetically quiet and low solar activity conditions to calculate several descriptive statistics of NmE close to noon for each month in a year, including the mathematical expectation of NmE, the standard deviations of NmE from the mathematically expected NmE, and the NmE variation coefficient. The month-to-month variability of these descriptors allowed us to identify months of a year when they reach their extremes (maxima, minima). We found that the most probable NmE cannot be considered as the best statistical parameter among the most probable NmE and the mathematically expected NmE in statistical studies of month-to-month variations of NmE. Depending on a choice of an ionosonde and a month, the calculated NmE variation coefficient changes from 5 to 12 %.

  4. 235U, 238U, 232Th, 40K and 137Cs activity concentrations in marine sediments along the northern coast of Oman Sea using high-resolution gamma-ray spectrometry.

    PubMed

    Zare, Mohammad Reza; Mostajaboddavati, Mojtaba; Kamali, Mahdi; Abdi, Mohammad Reza; Mortazavi, Mohammad Seddigh

    2012-09-01

    The natural radioactivity levels in sediment samples of the northern coast of Oman Sea, covering the coastal strip from Hormoz canyon to Goatr seaport, as the first time has been determined. The results of measurements will serve as background reference level for Oman Sea coastlines. Sediments from 36 coastal and near shore locations were collected for analysis. Analysis on the collected samples were carried out to determine (235)U, (238)U, (232)Th, (40)K and (137)Cs using two high purity germanium detectors with 38.5% and 55% relative efficiencies. The concentration of (235)U, (238)U, (232)Th, (40)K and (137)Cs in sediment samples ranged between 1.01 and 2.87 Bq/kg, 11.83 and 22.68 Bq/kg, 10.7 and 25.02 Bq/kg, 222.89 and 535.07 Bq/kg and 0.14 and 2.8 Bq/kg, respectively. The radium equivalent activity was well below the defined limit of 370 Bq/kg. The external hazard indices were found to be less than 1, indicating a low dose. PMID:22717321

  5. A first survey on the biochemical composition of egg yolk and lysozyme-like activity of egg envelopment in the cuttlefish Sepia officinalis from the Northern Adriatic Sea (Italy).

    PubMed

    Matozzo, Valerio; Conenna, Irene; Riedl, Verena Maria; Marin, Maria Gabriella; Marčeta, Tihana; Mazzoldi, Carlotta

    2015-08-01

    The cuttlefish Sepia officinalis is an important fishery resource in the Northern Adriatic Sea (Italy). During reproduction, fertilised eggs are released by adult females in coastal waters and embryo development can take over two months. During this period, embryos rely on nutrients and other substances, such as immune factors, provided by the female in egg yolk. In cephalopods in general, and specifically in the common cuttlefish, little information is available on yolk biochemical composition and substances included in egg envelopment. In the present study, the main biochemical components of egg yolk and the presence of antimicrobial substances in egg envelopment of S. officinalis were determined for the first time. Statistically significant differences in total egg weight and egg yolk weight were observed among batches from different females. Egg and yolk weights were positively correlated, with yolk representing the 13% (±5%) of the total egg weight. Total proteins were the main biochemical component (46%) of egg yolk, followed by total carbohydrates plus glycogen (39%) and lipids (15%). Statistically significant differences among batches were recorded in egg yolk total protein amounts, lipids, carbohydrates and glycogen, but no correlations were found between egg yolk weight and the biochemical components. The Petri dish and the quantitative spectrophotometric assays revealed the presence of lysozyme-like activity in egg gelatinous envelopment. PMID:25982397

  6. Impacts of human activity and climate on the hydrology and ecosystem services of forests in the Guianas on the northern rim of Amazonia

    NASA Astrophysics Data System (ADS)

    Parkin, G.; Wagner, T.; Bovolo, I.; Pereira, R.

    2010-12-01

    Tropical deforestation is one of the main areas of international concern in relation to increases in atmospheric carbon dioxide and feedbacks between land cover and climate. The Guiana Shield region, including the Guianas (Guyana, Surinam, and French Guiana), contains one of the largest remaining continuous areas of tropical forest on the Earth, and is therefore of international importance for climate stability. Its importance to the regional climate of South America is also potentially significant, as a possible conduit for vapour transport between the Caribbean and the continental interior. However, recent studies have confirmed the paucity of reliable hydrometeorological data in the forested interior in the Guianas that could help to improve understanding of these macro-scale links as well as the more local impacts of forest activities. A new hydrological monitoring programme has been established at the Iwokrama International Centre for Rainforest Conservation and Development in the interior of Guyana to provide evidence related to the impacts of forest activities and climate on ecosystem services provided by the forest. These services include water, carbon and nutrient cycling that are essential for maintaining biodiversity and other indicators necessary for long-term sustainability of the forest environment. The Iwokrama Centre aims to test the concept of a truly sustainable forest where conservation, environmental balance and economic use are mutually reinforcing. Iwokrama is uniquely placed for this research, in that it has integral involvement of the indigenous forest communities, and is geographically situated at a transition between mature intact forest and a savannah region that is likely to be sensitive to climate change, and on a larger scale at a transition between distinctive climate types in the coastal region of the Guianas influenced by the Equatorial Trough and the Amazonian interior which experiences a more continental type climate. The

  7. Volcano-hydrothermal activity detected by precise levelling surveys at the Tatun volcano group in Northern Taiwan during 2006-2013

    NASA Astrophysics Data System (ADS)

    Murase, Masayuki; Lin, Cheng-Hong; Kimata, Fumiaki; Mori, Hitoshi; Pu, Hsin-Chieh

    2014-10-01

    Precise levelling surveys were conducted from 2006 to 2013 on three levelling routes in the Tatun volcano group (TVG) located approximately 15 km northeast of Taipei, to detect deformation in relation to the volcano-hydrothermal activities of the TVG. Uplift was detected around the most active fumarole, Tayoukeng fumarole, throughout the period 2007 to 2011; the uplift rate throughout the period from March 2009 to March 2011 was reduced in comparison to the rate between 2007 and 2009. Following this, a dormant state or a small amount of subsidence was detected in the period March 2011 to March 2013. And throughout the period from June 2006 to March 2013, subsidence was centred on an area 0.5 km east of the summit of Mt. Cising, the highest peak in the TVG. A model of two spherical sources was therefore estimated from the deformation recorded from August 2007 to March 2011, using a genetic algorithm. A deflation source was obtained about 0.5 km northeast of Mt. Cising at a depth of 2 km; and an inflation source was situated approximately 1 km south of the Tayoukeng fumarole at a depth of 0.7 km. Based on previous seismic and AMT studies, the estimated sources are interpreted as being hydrothermal reservoirs. Because almost all the benchmarks around Mt. Cising show subsidence at a constant speed, we conclude that the deeper hydrothermal reservoir at a depth of 2 km may have been releasing hydrothermal fluid at a constant rate throughout the period from 2006 to 2013. However, it was suggested that in 2011 the shallower hydrothermal reservoir at a depth of 0.7 km changed from an inflation state to a dormant state (or small deflation) based on temporal vertical changes around Tayoukeng fumarole. A possible model for the volcano-hydrothermal system is therefore proposed. It is considered that the hydrothermal fluid may be supplied intermittently from the magma chamber to the deeper hydrothermal reservoir at a depth of 2 km (although this type of fluid input event may not

  8. Northern plants and ozone.

    PubMed

    Manninen, Sirkku; Huttunen, Satu; Tømmervik, Hans; Hole, Lars R; Solberg, Sverre

    2009-12-01

    Forests in northern Fennoscandia are mainly composed of the O3-sensitive species--Scots pine and downy, mountain, and silver birches. Seminatural vegetation also contributes to biodiversity, carbon cycling, and ecosystem services as a part of forests, mires, meadows, and road verges. Fumigation experiments show that current O3 concentrations of 30-50 ppb reduce plant biomass production and reproduction. Visible foliar injury is attributable to peak O3 concentrations and relates to fast phenological development and high growth rate. Trees can acclimate to O3-induced water stress by producing more xeromorphic leaves or needles. The direct effects of O3 on grassland vegetation also translate to changes in the structure and size of the soil microbial community, and ecosystem N cycling. It is necessary to reduce the emission of O3 precursors and maintain high biodiversity to protect northern ecosystems. Regular, systematic, countrywide monitoring and validation as well as quantification of the effects of O3 on plants in the Nordic countries are also necessary. PMID:20175438

  9. Identification of a novel gene expressed in activated natural killer cells and T cells

    SciTech Connect

    Dahl, C.A.; Schall, R.P.; He, H.; Cairns, J.S. )

    1992-01-15

    The authors have isolated a cDNA clone from a human activated NK cell-derived cDNA library that identifies a transcript [NK4] that is selectively expressed in lymphocytes. The expression of this transcript is increased after activation of T cells by mitogens or activation of NK cells by IL-2 (lymphokine-activated killer cells). The transcript levels demonstrated by Northern blot analysis increase by 12 h after activation, remain high for at least 48 h, and require protein synthesis for expression. Southern blot analysis of B lymphoblastoid lines derived from 18 unrelated individuals reveal variable banding patterns suggestive of polymorphism within the NK4 gene. No homology was found between the sequence of the coding region of this transcript and any sequences in the GenBank data base. Sequence homology to the U1 small nuclear RNA was found within the 3[prime] untranslated region immediately upstream of the site of polyadenylation, suggesting a possible role for U1 in the polyadenylation process. Sequence analysis indicates the transcript would encode a protein having a mass of 27 kDa. The presence of a signal sequence and lack of a transmembrane region suggests that the protein is secreted. In addition, the protein contains an RGD sequence that may be involved in cellular adhesion. This transcript appears to encode a novel product common to the activation pathways of both NK cells and T cells. 50 refs., 8 figs.

  10. Structural Analysis of Recent and Active Faults and Regional State of Stress in the Epicentral Area of the 1978 Thessaloniki Earthquakes (northern Greece)

    NASA Astrophysics Data System (ADS)

    Mercier, Jacques-Louis; Carey-Gailhardis, Evelyne; Mouyaris, Nicolas; Simeakis, Konstantinos; Roundoyannis, Theodora; Anghelidhis, Christos

    1983-12-01

    During spring and summer 1978, Macedonia (Greece) suffered damaging seismic activity. During the two main shocks which occurred on May 23 (Mb = 5.7) and June 20 (Mb = 6.1), seismic open cracks and faults were formed in the epicentral area, 25 km NNE from Thessaloniki. They have been mapped and their kinematics analyzed. These studies have shown that they result from the reactivation of existing faults of Pleistocene, Recent, and historical age and that the crust is stretching along a N-S to NNE-SSW direction in that part of the North Aegean. Principal stress directions have been computed from the slip vectors measured on recent neotectonic faults and seismic cracks and faults, this computation utilizing a simple mechanical model (homogeneous deformation through the addition of small and independent displacements of rigid blocks in a highly fractured body). A striking feature of this analysis is that the tensional directions σ3 deduced from seismic faulting and from recent neotectonic faulting are nearly the same. They are compatible with the regional tension axis deduced from focal mechanisms of North Aegean and with the focal mechanisms of the 1978 Thessaloniki main shocks. They are also compatible with in situ stress measurements in this region. Studies of superficial seismic faulting strongly support previous assumptions proposed from aftershock distribution: the 1978 Thessaloniki earthquakes resulted from reactivation of several different faults situated within the same NE dipping fault zone of Upper Eocene-Lower Oligocene age (and older) separating the Serbo-Macedonian Massif from the Peonias (East Vardar) zone.

  11. Large-scale thrusting along the northern margin of the Tibetan Plateau and the southwest Tarim basin: 230 km long active Hotian thrust sheet

    NASA Astrophysics Data System (ADS)

    Wang, Xin; Suppe, John; Liang, Hang; He, Dengfa

    2014-05-01

    We present the geometry, kinematics and mechanics of large-scale thrusting in the West Kunlun Shan and the southwest Tarim Basin, which is associated with the northward motion of Tibet. The great frontal structure is the ~230km long intact bedding parallel Hotian thrust sheet composed of strata of the Tarim Basin lying above a regional gypsum horizon at the base of the Cenozoic sequence. The toe of the Hotian thrust sheet steps steeply to the surface two thirds of the way across the basin forming the Selibuya-Mazartag hills in the sand desert. The Hotan thrust constitutes one of the longest active intact thrust sheets in the world, showing little internal deformation, however at its back it steps down to a Cambrian detachment at the base of the Paleozoic below a belt of complex high-amplitude anticlines near the front of the West Kunlun Shan, which display break-forward imbricate and wedge structure. More interior, steep reverse faults such as the Tieklik thrust bring older strata to the surface, including Paleozoic basement. The Cambrian detachment also extends northward under the Tarim basin with minor hanging-wall deformation that warps the Hotian Thrust sheet locally, causing the development of growth strata in the Hotian thrust sheet that providesa quantitative record of its motion over these warps. Seismic profiles in the southwest Tarim basin reveal widespread growth strata that record much of the structural history beginning in the early Pliocene Atushi Formation. Ages of seismic reflectors are calibrated to a surface magnetostratigraphic sequence(from Zheng et al., 2000)and traced throughout the seismic grid. The bottom of the growth strata is dated at 3.6 Ma indicating a Pliocene and younger age of thrusting and folding in the southwest Tarim Basin. Structural restoration suggests minimum shortening greater than 35km. The Tieklik thrust consumed at least 10 km in early Pliocene. The fold-and-thrust belts of the southwest Tarim basin shortened >25km in

  12. Smoke Blankets Northern California

    NASA Technical Reports Server (NTRS)

    2008-01-01

    Lightning strikes have sparked more than a thousand fires in northern California. This image was captured by the Multi-angle Imaging SpectroRadiometer's nadir (vertical-viewing) camera on 27 June 2008. Cape Mendocino is at the center of the image and Mt. Shasta is near the upper right. Concentrated smoke is visible in several river valleys and the large smoke cloud extends over the Pacific Ocean for hundreds of kilometers.

    MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, Calif., for NASA's Science Mission Directorate, Washington, D.C. The Terra satellite is managed by NASA's Goddard Space Flight Center, Greenbelt, Md. JPL is a division of the California Institute of Technology.

  13. Northern Sinus Meridiani Stereo

    NASA Technical Reports Server (NTRS)

    2003-01-01

    MGS MOC Release No. MOC2-341, 25 April 2003

    This is a stereo (3-d anaglyph) composite of Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) wide angle images of northern Sinus Meridiani near 2oN, 0oW. The light-toned materials at the south (bottom) end of the picture are considered to be thick (100-200 meters; 300-600 ft) exposures of sedimentary rock. Several ancient meteor impact craters are being exhumed from within these layered materials. To view in stereo, use '3-d' glasses with red over the left eye, and blue over the right. The picture covers an area approximately 113 km (70 mi) wide; north is up.

  14. Teleradiology in northern Quebec.

    PubMed

    Pagé, G; Grégoire, A; Galand, C; Sylvestre, J; Chahlaoui, J; Fauteux, P; Dussault, R; Séguin, R; Roberge, F A

    1981-08-01

    A two-way television network using the Canadian satellite ANIK-B was utilized to transmit radiographic images from Northern Quebec to Montreal. The accuracy of the radiologist's interpretation and his satisfaction with the TV system were studied using a series of 67 preselected cases and 425 current clinical cases. The four participating radiologists gave correct TV interpretations in 81% of the 39 selected cases presented at the beginning of the experiment. This value reached 94% for the other 28 selected cases presented after three months of regular use of the TV system. With current clinical cases, the agreement between TV and direct interpretations was 93%. Although magnification was available, correct identification of very small lesions proved to be the major source of error. On the whole, the radiologists were satisfied with the TV system. PMID:7255709

  15. Interrogation of multidrug resistance (MDR1) P-glycoprotein (ABCB1) expression in human pancreatic carcinoma cells: correlation of 99mTc-Sestamibi uptake with western blot analysis.

    PubMed

    Harpstrite, Scott E; Gu, Hannah; Natarajan, Radhika; Sharma, Vijay

    2014-10-01

    Histopathological studies indicate that ∼63% of pancreatic tumors express multidrug resistance (MDR1) P-glycoprotein (Pgp) and its polymorphic variants. However, Pgp expression detected at the mRNA or protein level does not always correlate with functional transport activity. Because Pgp transport activity is affected by specific mutations and the phosphorylation state of the protein, altered or less active forms of Pgp may also be detected by PCR or immunohistochemistry, which do not accurately reflect the status of tumor cell resistance. To interrogate the status of the functional expression of MDR1 Pgp in MiaPaCa-2 and PANC-1 cells, cellular transport studies using Tc-Sestamibi were performed and correlated with western blot analysis. Biochemical transport assays in human pancreatic carcinoma MiaPaCa-2 and PANC-1 cells, human epidermal carcinoma drug-sensitive KB-3-1 cells, and human breast carcinoma MCF-7 cells (negative controls), and human epidermal carcinoma drug-resistant KB-8-5 cells, human breast carcinoma stably transfected with Pgp MCF-7/MDR1Pgp cells, and liver carcinoma HepG2 cells (positive controls) were performed. Protein levels were determined using a monoclonal antibody C219. Tc-Sestamibi demonstrates accumulation in human pancreatic carcinoma MiaPaCa-2 and PANC-1 cells. Uptake profiles are not affected by treatment with LY335979, a Pgp inhibitor, and correlate with western blot analysis. These cellular transport studies indicate an absence of Pgp at a functional level in MiaPaCa-2 and PANC-1 cells. Because major pancreatic tumors originate from the pancreatic duct and Tc-Sestamibi undergoes a dominant hepatobiliary mode of excretion, it would not be a sensitive probe for imaging pancreatic adenocarcinomas. Following interrogation of the functional status of Pgp in other pancreatic carcinoma cells, chemotherapeutic drugs that are also MDR1 substrates could offer alternative therapeutics for treating pancreatic adenocarcinomas. PMID:25036383

  16. Bioactive compounds from northern plants.

    PubMed

    Hohtola, Anja

    2010-01-01

    Northern conditions are characterised by long days with much light and low temperatures during the growing season. It has been chimed that herbs and berries grown in the north are stronger tasting compared to those of southern origin. The compounds imparting aroma and color to berries and herbs are secondary metabolites which in plants mostly act as chemical means of defense. Recently, the production of secondary metabolites using plant cells has been the subject of expanding research. Light intensity, photoperiod and temperature have been reported to influence the biosynthesis of many secondary metabolites. Native wild aromatic and medicinal plant species of different families are being studied to meet the needs of raw material for the expanding industry of e.g., health-promoting food products known as nutraceutics. There are already a large number of known secondary compounds produced by plants, but the recent advances in modern extraction and analysis should enable many more as yet unknown compounds to be found, characterised and utilised. Rose root (Rhodiola rosea) is a perennial herbaceous plant which inhabits mountain regions throughout Europe, Asia and east coastal regions of North America. The extract made from the rhizomes acts as a stimulant like the Ginseng root. Roseroot has been categorized as an adaptogen and is reported to have many pharmacological properties. The biologically active components of the extract are salitroside tyrosol and cinnamic acid glycosides (rosavin, rosarin, rosin). Round-leaved sundew (Drosera rotundifolia L.) has circumboreal distribution. It inhabits nutrient-poor, moist and sunny areas such as peat bogs and wetlands. Sundew leaves are collected from the wild-type for various medicinal preparations and can be utilized in treating e.g., as an important "cough-medicine" for different respiratory diseases. The antimicrobial activity of extracts of aerial parts against various bacteria has been investigated. Drosera produces

  17. Performance of a Western blot assay to compare mother and newborn anti-Toxoplasma antibodies for the early neonatal diagnosis of congenital toxoplasmosis.

    PubMed

    Robert-Gangneux, F; Commerce, V; Tourte-Schaefer, C; Dupouy-Camet, J

    1999-09-01

    The aim of this study was to retrospectively evaluate the performance of a Western blot assay to compare mother and newborn anti-Toxoplasma gondii antibodies for the early neonatal diagnosis of congenital toxoplasmosis. Since specific anti-Toxoplasma IgM or IgA is detected inconstantly at birth in the neonate, the diagnosis of congenital toxoplasmosis is often delayed until 6-9 months, after IgG titers have been observed persistently. In this study, 81 paired samples from 60 mother/child pairs were tested for IgG and IgM patterns. All mothers had (or were strongly suspected to have) acquired toxoplasmosis during pregnancy. Specific IgM and IgA were simultaneously detected by immunocapture tests, and IgG was titrated. A serological and clinical follow-up of infants was conducted during the first year of life until the diagnosis of congenital toxoplasmosis could be either confirmed or ruled out. Seventeen of the 60 newborns were congenitally infected. Specific IgM or IgA was detected by immunocapture at birth in 76.5% and 70.6% of cord sera from infected neonates, respectively, with an equal specificity of 77.5%. Comparative Western blot allowed the detection of neosynthesized IgG and IgM in the cord blood of 50% and 78.6% of infected infants, respectively, with a specificity of 100%. The combination of IgA and IgM immunocapture tests, the analysis of IgG and IgM Western blot patterns, and the combination of both techniques allowed the detection of 94%, 94%, and 100% of cases within the first 3 months of life, respectively. In conclusion, Western blotting seems to be a useful complementary tool for the early postnatal diagnosis of congenital toxoplasmosis. PMID:10534187

  18. Identification of Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans with novel markers and using a dot blot platform coupled with automatic data analysis.

    PubMed

    Albuquerque, Pedro; Caridade, Cristina M R; Marcal, Andre R S; Cruz, Joana; Cruz, Leonor; Santos, Catarina L; Mendes, Marta V; Tavares, Fernando

    2011-08-15

    Phytosanitary regulations and the provision of plant health certificates still rely mainly on long and laborious culture-based methods of diagnosis, which are frequently inconclusive. DNA-based methods of detection can circumvent many of the limitations of currently used screening methods, allowing a fast and accurate monitoring of samples. The genus Xanthomonas includes 13 phytopathogenic quarantine organisms for which improved methods of diagnosis are needed. In this work, we propose 21 new Xanthomonas-specific molecular markers, within loci coding for Xanthomonas-specific protein domains, useful for DNA-based methods of identification of xanthomonads. The specificity of these markers was assessed by a dot blot hybridization array using 23 non-Xanthomonas species, mostly soil dwelling and/or phytopathogens for the same host plants. In addition, the validation of these markers on 15 Xanthomonas spp. suggested species-specific hybridization patterns, which allowed discrimination among the different Xanthomonas species. Having in mind that DNA-based methods of diagnosis are particularly hampered for unsequenced species, namely, Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans, for which comparative genomics tools to search for DNA signatures are not yet applicable, emphasis was given to the selection of informative markers able to identify X. fragariae, X. axonopodis pv. phaseoli, and X. fuscans subsp. fuscans strains. In order to avoid inconsistencies due to operator-dependent interpretation of dot blot data, an image-processing algorithm was developed to analyze automatically the dot blot patterns. Ultimately, the proposed markers and the dot blot platform, coupled with automatic data analyses, have the potential to foster a thorough monitoring of phytopathogenic xanthomonads. PMID:21705524

  19. Mycoplasma agassizii strain variation and distinct host antibody responses explain differences between enzyme-linked immunosorbent assays and Western blot assays.

    PubMed

    Wendland, Lori D; Klein, Paul A; Jacobson, Elliott R; Brown, Mary B

    2010-11-01

    The precarious status of desert (Gopherus agassizii) and gopher (G. polyphemus) tortoises has resulted in conservation efforts that now include health assessment as an important component of management decision-making. Mycoplasmal upper respiratory tract disease (URTD) is one of very few diseases in chelonians for which comprehensive and rigorously validated diagnostic tests exist. In this study, serum samples obtained from eight Gopherus tortoises documented at necropsy to (i) be enzyme-linked immunosorbent assay (ELISA) seropositive using the PS6 antigen, (ii) be infected with Mycoplasma agassizii as indicated by direct isolation of the pathogen from the respiratory surfaces, and (iii) have histological lesions of mycoplasmal URTD were used to evaluate four distinct clinical isolates of M. agassizii as antigens for ELISA and Western blot analyses. Each animal sample reacted in the Western blot with its homologous M. agassizii strain, but recognition of heterologous M. agassizii strains was variable. Further, individual animals varied significantly with respect to the specific proteins recognized by the humoral immune response. An additional 114 Gopherus serum samples were evaluated using ELISA antigens prepared from the four distinct M. agassizii strains; A₄₀₅ values were significantly correlated (r² goodness of fit range, 0.708 to 0.771; P < 0.0001) for all antigens tested. The results confirm that strain variation is responsible for the observed differences between Western blot binding patterns. Thus, reliance on a single M. agassizii strain as an antigen in Western blot assays may provide false-negative results. This could have adverse consequences for the well-being of these environmentally sensitive hosts if false-negative animals were relocated to sites consisting of true-negative populations. PMID:20810678

  20. Mycoplasma agassizii Strain Variation and Distinct Host Antibody Responses Explain Differences between Enzyme-Linked Immunosorbent Assays and Western Blot Assays ▿

    PubMed Central

    Wendland, Lori D.; Klein, Paul A.; Jacobson, Elliott R.; Brown, Mary B.

    2010-01-01

    The precarious status of desert (Gopherus agassizii) and gopher (G. polyphemus) tortoises has resulted in conservation efforts that now include health assessment as an important component of management decision-making. Mycoplasmal upper respiratory tract disease (URTD) is one of very few diseases in chelonians for which comprehensive and rigorously validated diagnostic tests exist. In this study, serum samples obtained from eight Gopherus tortoises documented at necropsy to (i) be enzyme-linked immunosorbent assay (ELISA) seropositive using the PS6 antigen, (ii) be infected with Mycoplasma agassizii as indicated by direct isolation of the pathogen from the respiratory surfaces, and (iii) have histological lesions of mycoplasmal URTD were used to evaluate four distinct clinical isolates of M. agassizii as antigens for ELISA and Western blot analyses. Each animal sample reacted in the Western blot with its homologous M. agassizii strain, but recognition of heterologous M. agassizii strains was variable. Further, individual animals varied significantly with respect to the specific proteins recognized by the humoral immune response. An additional 114 Gopherus serum samples were evaluated using ELISA antigens prepared from the four distinct M. agassizii strains; A405 values were significantly correlated (r2 goodness of fit range, 0.708 to 0.771; P < 0.0001) for all antigens tested. The results confirm that strain variation is responsible for the observed differences between Western blot binding patterns. Thus, reliance on a single M. agassizii strain as an antigen in Western blot assays may provide false-negative results. This could have adverse consequences for the well-being of these environmentally sensitive hosts if false-negative animals were relocated to sites consisting of true-negative populations. PMID:20810678

  1. Rapid fluorescent monitoring of total protein patterns on sodium dodecyl sulfate-polyacrylamide gels and western blots before immunodetection and sequencing.

    PubMed

    Alba, F J; Daban, J R

    1998-10-01

    The fluorogenic dye 2-methoxy-2,4-diphenyl-3(2H)-furanone (MDPF) has been used for the detection of total protein patterns on polyvinylidene difluoride (PVDF) membranes. Fluorescent staining of protein bands on membranes with this covalent dye is completed in 20 min. Wet membranes are translucent, allowing protein visualization by transillumination with ultraviolet light. The resulting images can be recorded using Polaroid film or a charge-coupled device camera. Electrophoretic bands containing 5-10 ng of protein can be detected on the MDPF-stained Western blot. When proteins are directly transferred to the membrane using a slot blotting device, as little as 0.5 ng of protein can be detected. Previous visualization of protein bands on sodium dodecyl sulfate-polyacrylamide gels with the noncovalent fluorescent dye Nile red (Alba et al., BioTechniques, 1996, 21, 625-626) does not interfere with further MDPF staining and fluorescent detection of these bands transferred to PVDF membranes. Thus, Nile red and MDPF staining can be performed sequentially, allowing the rapid monitoring of total protein patterns on both the electrophoretic gel and Western blot. Using the conditions described in this study, MDPF staining does not preclude further N-terminal microsequencing and immunodetection of specific bands with polyclonal antibodies. PMID:9820958

  2. Parity among the randomly amplified polymorphic DNA method, multilocus enzyme electrophoresis, and Southern blot hybridization with the moderately repetitive DNA probe Ca3 for fingerprinting Candida albicans.

    PubMed Central

    Pujol, C; Joly, S; Lockhart, S R; Noel, S; Tibayrenc, M; Soll, D R

    1997-01-01

    Randomly amplified polymorphic DNA (RAPD) analysis, multilocus enzyme electrophoresis (MLEE), and Southern blot hybridization with moderately repetitive DNA probes have emerged as effective fingerprinting methods for the infectious fungus Candida albicans. The three methods have been compared for their capacities to identify identical or highly related isolates, to cluster weakly related isolates, to discriminate between unrelated isolates, and to assess microevolution within a strain. By computing similarity coefficients between 29 isolates from three cities within the continental United States, strong concordance of the results is demonstrated for RAPD analysis, MLEE, and Southern blot hybridization with the moderately repetitive probe Ca3, and weaker concordance of the results is demonstrated for these three fingerprinting methods and Southern blot hybridization with the moderately repetitive probe CARE2. All methods were also demonstrated to be able to resolve microevolution within a strain, with the Ca3 probe exhibiting the greatest resolving power. The strong correlations demonstrated between polymorphic markers assessed by the four independent fingerprinting methods and the nonrandom association between loci demonstrated by RAPD analysis and MLEE provide evidence for strong linkage disequilibrium and a clonal population structure for C. albicans. In addition, a synapomorphic allele, Pep-3A, was found to be present in all members of one of the three clusters discriminated by RAPD analysis, MLEE, and Ca3 fingerprinting, supporting the concordance of the clustering capacities of the three methods, the robustness of the clusters, and the clonal nature of the clusters. PMID:9276415

  3. Anti-RAINBOW dye-specific antibodies as universal tools for the visualization of prestained protein molecular weight markers in Western blot analysis

    PubMed Central

    Schüchner, Stefan; Andorfer, Peter; Mudrak, Ingrid; Ogris, Egon

    2016-01-01

    Western blotting is one of the most widely used techniques in molecular biology and biochemistry. Prestained proteins are used as molecular weight standards in protein electrophoresis. In the chemiluminescent Western blot analysis, however, these colored protein markers are invisible leaving researchers with the unsatisfying situation that the signal for the protein of interest and the signal for the markers are not captured simultaneously and have to be merged in an error-prone step. To allow the simultaneous detection of marker proteins we generated monoclonal antibodies specific for the protein dyes. To elicit a dye rather than protein specific immune response we immunized mice sequentially with dye-carrier protein complexes, in which a new carrier protein was used for each subsequent immunization. Moreover, by sequentially immunizing with dye-carrier protein complexes, in which different but structurally related dyes were used, we could also generate an antibody, termed anti-RAINBOW, that cross-reacted even with structurally related dyes not used in the immunizations. Our novel antibodies represent convenient tools for the simultaneous Western blot detection of commercially available prestained marker proteins in combination with the detection of any specific protein of interest. These antibodies will render obsolete the anachronistic tradition of manually charting marker bands on film. PMID:27531616

  4. Anti-RAINBOW dye-specific antibodies as universal tools for the visualization of prestained protein molecular weight markers in Western blot analysis.

    PubMed

    Schüchner, Stefan; Andorfer, Peter; Mudrak, Ingrid; Ogris, Egon

    2016-01-01

    Western blotting is one of the most widely used techniques in molecular biology and biochemistry. Prestained proteins are used as molecular weight standards in protein electrophoresis. In the chemiluminescent Western blot analysis, however, these colored protein markers are invisible leaving researchers with the unsatisfying situation that the signal for the protein of interest and the signal for the markers are not captured simultaneously and have to be merged in an error-prone step. To allow the simultaneous detection of marker proteins we generated monoclonal antibodies specific for the protein dyes. To elicit a dye rather than protein specific immune response we immunized mice sequentially with dye-carrier protein complexes, in which a new carrier protein was used for each subsequent immunization. Moreover, by sequentially immunizing with dye-carrier protein complexes, in which different but structurally related dyes were used, we could also generate an antibody, termed anti-RAINBOW, that cross-reacted even with structurally related dyes not used in the immunizations. Our novel antibodies represent convenient tools for the simultaneous Western blot detection of commercially available prestained marker proteins in combination with the detection of any specific protein of interest. These antibodies will render obsolete the anachronistic tradition of manually charting marker bands on film. PMID:27531616

  5. WIND CHARACTERISTICS OF MESQUITE STREETS IN THE NORTHERN CHIHUAHUAN DESERT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Past research has shown that the most important areas for active sand movement in the northern part of the Chihuahuan Desert are mesquite-dominated desert ecosystems possessing sandy soil texture. The most active sand movement in the mesquite-dominated ecosystems has been shown to take place on elon...

  6. Northern Taurids in the IAU Meteor Data Center Database

    NASA Astrophysics Data System (ADS)

    Svoren, Jan; Kanuchova, Zuzana; Husarik, Marek

    2013-01-01

    The method of indices was used to study the northern branch of the autumn (night) part of the Taurid complex. The procedure is based on mathematical statistics only and was applied to select the Northern Taurid meteor records from the IAU Meteor Data Center Database. Because we wanted to study especially the fine structure of the inner part of the Northern Taurids, we were focused on the interval of the higher activity of the stream - from the end of the activity of the Perseids until the beginning of the Geminids activity. The outlying parts of the complex, active until January according to some authors, were not taken into account. In total, 84 Northern Taurid orbits were selected. Of these 84 orbits, 63 (75%) were sorted into 11 associations found in the stream. One of the associations consisted of three orbits and was identified as a previously unknown northern branch of the Tau-Arietids. We also found an association with orbital characteristics equal to the characteristics of the Delta-Piscids North and the Chi-Orionids North. The meteors in these associations were observed up to three weeks earlier compared to the currently cataloged data of the showers. The orientation of the mean orbit of a 5-member association with the Delta-Piscids North was different from the general trend, indicating that this stream may not be genetically related to other members of the Taurid complex.

  7. Cloning of the mitogen-activated S6 kinase from rat liver reveals an enzyme of the second messenger subfamily

    SciTech Connect

    Kozma, S.C.; Ferrari, S. Bassand, P.; Siegmann, M.; Thomas, G. ); Totty, N. )

    1990-10-01

    Recently the authors reported the purification of a mitogen-activated S6 kinase from Swiss mouse 3T3 fibroblasts and rat liver. The rat liver protein was cleaved with cyanogen bromide or trypsin and 17 of the resulting peptides were sequenced. DNA primers were generated from 3 peptides that had homology to sequences of the conserved catalytic domain of protein kinases. These primers were used in the polymerase chain reaction to obtain a 0.4-kilobase DNA fragment. This fragment was either radioactively labeled and hybridized to Northern blots of poly(A){sup {sup plus}} mRNA or used to screen a rat liver cDNA library. Northern blot analysis revealed four transcripts of 2.5, 3.2, 4.0, and 6.0 kilobases, and five S6 kinase clones were obtained by screening the library. Only two of the clones, which were identical, encoded a full-length protein. This protein had a molecular weight of 56,160, which correlated closely to that of the dephosphorylated kinase determined by SDS/PAGE. The catalytic domain of the kinase resembles that of other serine/threonine kinases belonging to the second messenger subfamily of protein kinases.

  8. Wildfires in Northern Siberian Larch Dominated Communities

    NASA Technical Reports Server (NTRS)

    Khaurk, Viacheslav I.; Ranson, Kenneth J.; Dvinskaya, Maria L.; Im, Sergey T.

    2011-01-01

    The fire history of the northern larch forests within the permafrost zone in a portion of northern Siberia (approx 66 deg N, 100 deg E) was studied. Since there is little to no human activities in this area fires within the study area were mostly caused by lightning. Fire return intervals (FRI) were estimated based on burn marks on tree stems and dates of tree natality. FRI values varied from 130 yr to 350 yr with 200 +/- 50 yr mean. In southerly larch dominated communities FRI was found to be shorter (77 +/- 20 yr at approx 61 deg. N, and 82 +/- 7 at 64 deg N), and longer at the northern boundary (approx 71 deg) of larch stands (320 +/- 50 yr). During the Little Ice Age period in the 16th to 18th centuries FRI was approximately twice as long as recorded in this study. Fire caused changes in the soil including increases in soil drainage and permafrost thawing depth and a radial growth increase of about 2 times (with more than 6 times observed). This effect may simulate the predicted warming impact on the larch growth in the permafrost zone.

  9. Breeding colonies of least terns (Sternula antillarum) in northern Sonora, Mexico, 2006-2008

    USGS Publications Warehouse

    Rosemartin, Alyssa; van Riper, Charles, III

    2012-01-01

    We document distribution of breeding least terns (Sternula antillarum) in northern Sonora, Mexico, 2006-2008. We report breeding activity at six sites with active colonies, including three previously undocumented colonies.

  10. MISR Views Northern Australia

    NASA Technical Reports Server (NTRS)

    2000-01-01

    MISR images of tropical northern Australia acquired on June 1, 2000 (Terra orbit 2413) during the long dry season. Left: color composite of vertical (nadir) camera blue, green, and red band data. Right: multi-angle composite of red band data only from the cameras viewing 60 degrees aft, 60 degrees forward, and nadir. Color and contrast have been enhanced to accentuate subtle details. In the left image, color variations indicate how different parts of the scene reflect light differently at blue, green, and red wavelengths; in the right image color variations show how these same scene elements reflect light differently at different angles of view. Water appears in blue shades in the right image, for example, because glitter makes the water look brighter at the aft camera's view angle. The prominent inland water body is Lake Argyle, the largest human-made lake in Australia, which supplies water for the Ord River Irrigation Area and the town of Kununurra (pop. 6500) just to the north. At the top is the southern edge of Joseph Bonaparte Gulf; the major inlet at the left is Cambridge Gulf, the location of the town of Wyndham (pop. 850), the port for this region. This area is sparsely populated, and is known for its remote, spectacular mountains and gorges. Visible along much of the coastline are intertidal mudflats of mangroves and low shrubs; to the south the terrain is covered by open woodland merging into open grassland in the lower half of the pictures.

    MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Office of Earth Science, Washington, DC. The Terra satellite is managed by NASA's Goddard Space Flight Center, Greenbelt, MD. JPL is a division of the California Institute of Technology.

  11. Isolated Northern Dunes

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site]

    Our topic for the weeks of April 4 and April 11 is dunes on Mars. We will look at the north polar sand sea and at isolated dune fields at lower latitudes. Sand seas on Earth are often called 'ergs,' an Arabic name for dune field. A sand sea differs from a dune field in two ways: 1) a sand sea has a large regional extent, and 2) the individual dunes are large in size and complex in form.

    This VIS image was taken at 81 degrees North latitude during Northern spring. In this region, the dunes are isolated from each other. The dunes are just starting to emerge from the winter frost covering appearing dark with bright crests. These dunes are located on top of ice.

    Image information: VIS instrument. Latitude 82.1, Longitude 191.3 East (168.7 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

  12. Tornadoes Strike Northern Wisconsin

    NASA Technical Reports Server (NTRS)

    2007-01-01

    A series of tornadoes ripped through the Upper Midwest region of the United States in the evening of June 7, 2007. At least five different tornadoes touched down in Wisconsin, according to the Associated Press, one of which tore through the Bear Paw Resort in northern Wisconsin. Despite dropping as much as fifteen centimeters (six inches) of rain in some places and baseball-size hail in others, authorities were reporting no deaths attributable to the storm system, and only a smattering of injuries, but considerable property damage in some areas. When the MODIS instrument on NASA's Terra satellite observed the area on June 9, 2007, the track torn through the woods by one of the tornadoes stands out quite clearly. This photo-like image uses data collected by MODIS in the normal human vision range to give a familiar natural-looking appearance. The landscape is largely a checkerboard of farms, towns, roads, and cities. The pale land is predominantly farmland where crops have not fully grown in yet. Dark blue shows the winding path of rivers and lakes dotting the landscape. The large blue lake on the east (right) side of the image is Lake Michigan. Towns and cities, including the city of Green Bay, are gray. To the north side, farmland gives way to dark green as land use shifts from agriculture to the Menominee Indian Reservation and Nicolet National Forest. The diagonal slash through the dark green forested land shows the tornado track. Bare land was revealed where the tornado tore down trees or stripped vegetation off the branches. The high-resolution image provided above is at MODIS' full spatial resolution (level of detail) of 250 meters per pixel. The MODIS Rapid Response System provides this image at additional resolutions.

  13. Northern Sand Sea

    NASA Technical Reports Server (NTRS)

    2005-01-01

    [figure removed for brevity, see original site]

    Our topic for the weeks of April 4 and April 11 is dunes on Mars. We will look at the north polar sand sea and at isolated dune fields at lower latitudes. Sand seas on Earth are often called 'ergs,' an Arabic name for dune field. A sand sea differs from a dune field in two ways: 1) a sand sea has a large regional extent, and 2) the individual dunes are large in size and complex in form.

    This VIS image was taken at 82 degrees North latitude during Northern spring. The image is completely dominated by dunes. In sand seas, it is very common for a single type of dune to occur, and for a single predominate wind to control the alignment of the dunes.

    Image information: VIS instrument. Latitude 82.2, Longitude 152.5 East (207.5 West). 19 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

  14. Reverse Cross Blot Hybridization Assay for Rapid Detection of PCR-Amplified DNA from Candida Species, Cryptococcus neoformans, and Saccharomyces cerevisiae in Clinical Samples

    PubMed Central

    Posteraro, Brunella; Sanguinetti, Maurizio; Masucci, Luca; Romano, Lucio; Morace, Giulia; Fadda, Giovanni

    2000-01-01

    A PCR-based assay was developed to detect and identify medically important yeasts in clinical samples. Using a previously described set of primers (G. Morace et al., J. Clin. Microbiol. 35:667–672, 1997), we amplified a fragment of the ERG11 gene for cytochrome P-450 lanosterol 14α-demethylase, a crucial enzyme in the biosynthesis of ergosterol. The PCR product was analyzed in a reverse cross blot hybridization assay with species-specific probes directed to a target region of the ERG11 gene of Candida albicans (pCal), C. guilliermondii (pGui), C. (Torulopsis) glabrata (pGla), C. kefyr (pKef), C. krusei (pKru), C. parapsilosis (pPar), C. tropicalis (pTro), the newly described species C. dubliniensis (pDub), Saccharomyces cerevisiae (pSce), and Cryptococcus neoformans (pCry). The PCR-reverse cross blot hybridization assay correctly identified multiple isolates of each species tested. No cross-hybridization was detected with any other fungal, bacteria, or human DNAs tested. The method was tested against conventional identification on 140 different clinical samples, including blood and cerebrospinal fluid, from patients with suspected fungal infections. The results agreed with those of culture and phenotyping for all but six specimens (two of which grew yeasts not included in the PCR panel of probes and four in which PCR positivity-culture negativity was justified by clinical findings). Species identification time was reduced from a mean of 4 days with conventional identification to 7 h with the molecular method. The PCR-reverse cross blot hybridization assay is a rapid method for the direct detection and identification of yeasts in clinical samples. PMID:10747151

  15. The epidemiology of tick-borne haemoparasites as determined by the reverse line blot hybridization assay in an intensively studied cohort of calves in western Kenya

    PubMed Central

    Njiiri, Nyawira E.; Bronsvoort, B. Mark deC.; Collins, Nicola E.; Steyn, Helena C.; Troskie, Milana; Vorster, Ilse; Thumbi, S.M.; Sibeko, Kgomotso P.; Jennings, Amy; van Wyk, Ilana Conradie; Mbole-Kariuki, Mary; Kiara, Henry; Poole, E. Jane; Hanotte, Olivier; Coetzer, Koos; Oosthuizen, Marinda C.; Woolhouse, Mark; Toye, Philip

    2015-01-01

    The development of sensitive surveillance technologies using PCR-based detection of microbial DNA, such as the reverse line blot assay, can facilitate the gathering of epidemiological information on tick-borne diseases, which continue to hamper the productivity of livestock in many parts of Africa and elsewhere. We have employed a reverse line blot assay to detect the prevalence of tick-borne parasites in an intensively studied cohort of indigenous calves in western Kenya. The calves were recruited close to birth and monitored for the presence of infectious disease for up to 51 weeks. The final visit samples from 453 calves which survived for the study period were analyzed by RLB. The results indicated high prevalences of Theileria mutans (71.6%), T. velifera (62.8%), Anaplasma sp. Omatjenne (42.7%), A. bovis (39.9%), Theileria sp. (sable) (32.7%), T. parva (12.9%) and T. taurotragi (8.5%), with minor occurrences of eight other haemoparasites. The unexpectedly low prevalence of the pathogenic species Ehrlichia ruminantium was confirmed by a species-specific PCR targeting the pCS20 gene region. Coinfection analyses of the seven most prevalent haemoparasites indicated that they were present as coinfections in over 90% of the cases. The analyses revealed significant associations between several of the Theileria parasites, in particular T. velifera with Theileria sp. sable and T. mutans, and T. parva with T. taurotragi. There was very little coinfection of the two most common Anaplasma species, although they were commonly detected as coinfections with the Theileria parasites. The comparison of reverse line blot and serological results for four haemoparasites (T. parva, T. mutans, A. marginale and B. bigemina) indicated that, except for the mostly benign T. mutans, indigenous cattle seem capable of clearing infections of the three other, pathogenic parasites to below detectable levels. Although the study site was located across four agroecological zones, there was

  16. Comparing the Southern blot method and polymerase chain reaction product analysis for chimeric RCCX detection in CYP21A2 deficiency.

    PubMed

    Lee, Hsien-Hsiung; Lee, Yann-Jinn; Chao, Mei-Chyn

    2010-04-15

    The 3.2-kb TaqI-produced fragment of the CYP21A1P pseudogene and the 3.7-kb TaqI-produced fragment of the functional CYP21A2 gene exist on chromosome 6p21.3. We used the polymerase chain reaction (PCR) product and Southern blot method with TaqI endonuclease digestion to identify a chimeric RCCX module in two unrelated patients with congenital adrenal hyperplasia (CAH). After TaqI cleavage, the PCR product analysis revealed that patient 1 with the chimeric CYP21A1P/CYP21A2 gene in one allele and IVS2-12A/C>G in combination with the 707-714del mutation in the other allele produced a configuration of 3.2- and 2.4-kb fragments. Patient 2, who carried IVS2-12A/C>G in combination with the 707-714del mutation in one allele and the chimeric TNXA/TNXB gene in the other allele, presented with 3.2- and 2.3-kb fragments. However, Southern blot analysis showed that patients 1 and 2 produced 3.2-, 2.4-, and 2.5-kb fragments. We conclude that the chimeric CYP21A1P/CYP21A2 gene, IVS2-12A/C>G in combination with the 707-714del mutation, and the chimeric TNXA/TNXB gene cannot be distinguished by the Southern blot method. Conversely, the chimeric TNXA/TNXB gene was identified in the PCR product analysis due to the appearance of the 2.37-kb fragment, which indicates the occurrence of the chimeric TNXA/TNXB formation extending to the boundary of TNXA in the RCCX region. PMID:19961824

  17. TORC1 activity is partially reduced under nitrogen starvation conditions in sake yeast Kyokai no. 7, Saccharomyces cerevisiae.

    PubMed

    Nakazawa, Nobushige; Sato, Aya; Hosaka, Masahiro

    2016-03-01

    Industrial yeasts are generally unable to sporulate but treatment with the immunosuppressive drug rapamycin restores this ability in a sake yeast strain Kyokai no. 7 (K7), Saccharomyces cerevisiae. This finding suggests that TORC1 is active under sporulation conditions. Here, using a reporter gene assay, Northern and Western blots, we tried to gain insight into how TORC1 function under nitrogen starvation conditions in K7 cells. Similarly to a laboratory strain, RPS26A transcription was repressed and Npr1 was dephosphorylated in K7 cells, indicative of the expected loss of TORC1 function under nitrogen starvation. The expression of nitrogen catabolite repression-sensitive genes, however, was not induced, the level of Cln3 remained constant, and autophagy was more slowly induced than in a laboratory strain, all suggestive of active TORC1. We conclude that TORC1 activity is partially reduced under nitrogen starvation conditions in K7 cells. PMID:26272416

  18. Genotyping of 27 human papillomavirus types by using L1 consensus PCR products by a single-hybridization, reverse line blot detection method.

    PubMed

    Gravitt, P E; Peyton, C L; Apple, R J; Wheeler, C M

    1998-10-01

    Amplification of human papillomavirus (HPV) DNA by L1 consensus primer systems (e.g., MY09/11 or GP5(+)/6(+)) can detect as few as 10 to 100 molecules of HPV targets from a genital sample. However, genotype determination by dot blot hybridization is laborious and requires at least 27 separate hybridizations for substantive HPV-type discrimination. A reverse blot method was developed which employs a biotin-labeled PCR product hybridized to an array of immobilized oligonucleotide probes. By the reverse blot strip analysis, genotype discrimination of multiple HPV types can be accomplished in a single hybridization and wash cycle. Twenty-seven HPV probe mixes, two control probe concentrations, and a single reference line were immobilized to 75- by 6-mm nylon strips. Each individual probe line contained a mixture of two bovine serum albumin-conjugated oligonucleotide probes specific to a unique HPV genotype. The genotype spectrum discriminated on this strip includes the high-risk, or cancer-associated, HPV genotypes 16, 18, 26, 31, 33, 35, 39, 45, 51, 52, 55, 56, 58, 59, 68 (ME180), MM4 (W13B), MM7 (P291), and MM9 (P238A) and the low-risk, or non-cancer-associated, genotypes 6, 11, 40, 42, 53, 54, 57, 66, and MM8 (P155). In addition, two concentrations of beta-globin probes allowed for assessment of individual specimen adequacy following amplification. We have evaluated the performance of the strip method relative to that of a previously reported dot blot format (H. M. Bauer et al., p. 132-152, in C. S. Herrington and J. O. D. McGee (ed.), Diagnostic Molecular Pathology: a Practical Approach, (1992), by testing 328 cervical swab samples collected in Digene specimen transport medium (Digene Diagnostics, Silver Spring, Md.). We show excellent agreement between the two detection formats, with 92% concordance for HPV positivity (kappa = 0.78, P < 0.001). Nearly all of the discrepant HPV-positive samples resulted from weak signals and can be attributed to sampling error from

  19. Use of the water-soluble fluor sodium salicylate for fluorographic detection of tritium in thin-layer chromatograms and nitrocellulose blots

    SciTech Connect

    Lucher, L.A.; Lego, T.

    1989-05-01

    We have determined that sodium salicylate, a water-soluble fluor which we use routinely for fluorography with polyacrylamide gels, is also useful for fluorography with thin-layer media. Detection of /sup 3/H-labeled material applied to thin-layer chromatography plates, or nitrocellulose membranes, can be enhanced up to 150-fold after treatment with an aqueous solution of 2 M sodium salicylate, while detection of /sup 35/S-labeled material is enhanced only about 2-fold. We demonstrate the utility of sodium salicylate fluorography in detecting 3H-labeled palmitic acid following thin-layer chromatography and /sup 3/H-labeled proteins following blotting to nitrocellulose.

  20. Recent earthquakes in northern New York

    SciTech Connect

    Revetta, F.A.; Bockus, C.; O'Brian, B. . Dept. of Geology)

    1993-03-01

    The Massena, New York area located along the St. Lawrence River in northern New York has been the site of significant earthquake activity including the largest earthquake in New York (m = 6.0) on September 5, 1944. Historic earthquake data indicates the Cornwall-Massena area is a region of relatively high seismic activity, and the earthquake activity has been persistent for over a 400 year period. During the past year eleven small earthquakes have been recorded by the Potsdam Seismic Network in northern New York. Four of these earthquakes had epicenters located in the Massena-Cornwall area. One epicenter was located along the Carthage-Colton Mylonite Zone and one epicenter was located n the epicentral region of the October 7, 1984 Goodnow earthquake. Five earthquakes had epicenters located in Ontario and Quebec. These earthquake epicenters lie in a belt of seismicity that extends north-westerly from the northern Adirondacks into the Canadian Shield of western Quebec. Several explanations that have been presented to explain these earthquakes are (1) mafic intrusions (2) unmapped northwest trending faults (3) extension of the New England seamount chain and (4) crustal fractures due to the area passing over a hotspot. Four earthquakes in the Massena area lie very near extensions of the Gloucester and Winchester Spring faults into New York and may be related to the faults. Focal mechanism solutions of two earthquakes indicate thrusting along NW striking fault planes. Another possibility is the earthquakes are related to the Carthage-Colton Mylonite Zone. One earthquake is within four kms of the CCMZ and if the zone is extended northward beneath the lower Paleozoics, it passes through the epicenters on the Cornwall-Massena area.

  1. From the Northern Eurasia Earth Science Partnership Initiative (NEESPI) towards the Northern Eurasia Future Initiative (NEFI)

    NASA Astrophysics Data System (ADS)

    Groisman, Pavel; Gutman, Garik; Gulev, Sergey; Maksyutov, Shamil

    2015-04-01

    Northern Eurasia Earth Science Partnership Initiative (NEESPI, http://neespi.org) was launched in 2004. With its multidisciplinary focus, the internationally funded NEESPI (more than 170 individual international projects during the past decade) has challenged participants to research climate-ecosystem interactions, societal impacts from extreme events in Northern Eurasia, and the feedbacks of these interactions and impacts to the global Earth system. NEESPI was endorsed by major ESSP Programs and Projects and the cornerstone support for the NEESPI studies was provided by the NASA Land Cover and Land Use Change Program and the Russian Academy of Sciences. Now it is the time to synthesis the main achievements of the NEESPI researchers and to re-assess its Science Questions and Objectives of the regional research within the new Future Earth Program paradigm with the focus on interdisciplinary solution-oriented approach that will allow effective policy-making in environment management and control. At the sequence of Workshops (the last of them will be in Prague one week prior to this Assembly) we formulated a major Science Question of the new Northern Eurasia Future Initiative (NEFI): "What will the changes in the regional ecosystems dynamics and interactions mean for the societal well-being, activities, health, and strategic planning in Northern Eurasia?" The major NEFI challenge will be the services aimed on providing in Northern Eurasia a sustainable societal development in changing climate, ecosystems, and societies. At this presentation we shall brief the audience about the main results of the NEESPI researchers, and lay down the plans for the future NEFI studies. At the side event of the Meeting, we shall initiate preparation of the book which will synthesize major NEESPI achievements.

  2. Northern Polar Cap

    NASA Technical Reports Server (NTRS)

    2004-01-01

    [figure removed for brevity, see original site]

    Released 13 May 2004 This nighttime visible color image was collected on November 26, 2002 during the Northern Summer season near the North Polar Cap Edge.

    The THEMIS VIS camera is capable of capturing color images of the martian surface using its five different color filters. In this mode of operation, the spatial resolution and coverage of the image must be reduced to accommodate the additional data volume produced from the use of multiple filters. To make a color image, three of the five filter images (each in grayscale) are selected. Each is contrast enhanced and then converted to a red, green, or blue intensity image. These three images are then combined to produce a full color, single image. Because the THEMIS color filters don't span the full range of colors seen by the human eye, a color THEMIS image does not represent true color. Also, because each single-filter image is contrast enhanced before inclusion in the three-color image, the apparent color variation of the scene is exaggerated. Nevertheless, the color variation that does appear is representative of some change in color, however subtle, in the actual scene. Note that the long edges of THEMIS color images typically contain color artifacts that do not represent surface variation.

    Image information: VIS instrument. Latitude 80, Longitude 43.2 East (316.8 West). 38 meter/pixel resolution.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for

  3. Detection of IgM antibodies against a recombinant nucleocapsid protein of canine distemper virus in dog sera using a dot-blot assay.

    PubMed

    Barben, G; Stettler, M; Jaggy, A; Vandevelde, M; Zurbriggen, A

    1999-03-01

    A dot-blot assay for the detection of IgM antibodies (ABs) against canine distemper virus (CDV) in canine serum is described. The diagnostic potential of this technique was evaluated by analysing sera from three test groups: (i) specific pathogen-free (SPF) beagle dogs experimentally infected with virulent CDV; (ii) SPF dogs immunized with a combined vaccine containing CDV, and (iii) SPF dogs immunized with a CDV-free vaccine. As antigen for the dot-blot assay we used the recombinant nucleocapsid protein (N protein) of the virulent A75/17 CDV strain. All 12 dogs of group 1, infected with virulent CDV, showed detectable CDV-specific IgM levels in their serum. All dogs of group 2 were also positive for anti-CDV IgM after the first immunization with the CDV-containing vaccine. The four dogs immunized with a CDV-free vaccine (group iii) remained negative throughout the course of the experiment. From these results, we conclude that the IgM detection test, which requires only a single serum sample, is a useful method for diagnosing current or recent CDV infection in CDV-infected or CDV-immunized dogs under experimental conditions. PMID:10216448

  4. Analysis of the insulin receptor gene in noninsulin-dependent diabetes mellitus by denaturing gradient gel blots: A clinical research center study

    SciTech Connect

    Magre, J.; Goldfine, A.B.; Warram, J.H.

    1995-06-01

    We have used a new technique of denaturing gradient gel blotting to determine the prevalence of alterations in the intracellular domain of the insulin receptor in normal individuals and subjects with non-insulin-dependent diabetes mellitus (NIDDM). This method detects DNA sequence differences as restriction fragment melting polymorphisms (RFMP) and is sensitive to changes in sequence at both restriction sites and within the fragments themselves. Using restriction digests with AluI, HaeIII, HinfI, RsaI, Sau3A, and Sau96, 12 RFMPs were found to localize to the region of the {beta}-subunit of the insulin receptor gene. Using exon-specific probes, these RFMPs could be localized to specific regions surrounding individual exons, including exons, 14, 15, 16, 18, 20, and 22. In general, linkage disequilibrium between polymorphisms was inversely related to their distance in the gene structure, although there was a {open_quotes}hot spot{close_quotes} for recombination between exons 19 and 20. No difference in melting temperatures or allele frequency was observed between NIDDM patients and controls. These data indicate that the region of the insulin receptor gene coding for the intracellular portion of the {beta}-subunit is highly polymorphic and that polymorphisms surrounding specific exons can be identified by denaturing gradient gel blotting, but there is no evidence that variation at this locus contributes to NIDDM susceptibility in most individuals. 36 refs., 3 figs., 3 tabs.

  5. Structural characterization of blotting membranes and the influence of membrane parameters for electroblotting and subsequent amino acid sequence analysis of proteins.

    PubMed

    Eckerskorn, C; Lottspeich, F

    1993-09-01

    Various blotting membranes were evaluated and correlated with the efficiency of electroblotting and the performance in the sequencing process. Structural parameters including specific surface area, pore size distribution, pore volumes, and permeabilities of different solvents lead to discrimination of the membranes relative to their accessible surfaces and membrane densities. Protein binding capacities as well as protein recoveries in electroblotting correlate with the specific surface areas. Almost quantitative retention of proteins during electroblotting from gels was obtained for membranes with a high specific surface area and narrow pores (Trans-Blot, Immobilon PSQ, Fluorotrans), whereas membranes with a relatively low specific surface area (Immobilon P, Glassybond) showed reduced recoveries of between 10-20% for the tested proteins. Initial yields and repetitive yields were compared for radioiodinated standard proteins that have been either electroblotted or loaded by direct adsorption. The results showed that the different permeabilities for solutions of the Edman chemistry have a major influence on initial yields. The glass fiber-based membranes with an extremely low flow restriction produce consistently high initial yields independent of the application mode of the protein (spotted or electroblotted) or the application of the membranes into the cartridge (discs or small pieces). In contrast, the polymeric membranes showed decreasing initial yields with increasing membrane density for spotted and electroblotted proteins. Yields varied considerably when the membranes were applied as discs into the cartridge. This effect could be minimized by cutting the membranes into pieces as small as possible, as demonstrated for electroblotted proteins. PMID:8223390

  6. An improved method for western blotting when extracting proteins from mammalian cells cultured on a collagen gel under serum-free conditions.

    PubMed

    Ishihara, Seiichiro; Mizutani, Takeomi; Kawabata, Kazushige; Haga, Hisashi

    2016-01-01

    Western blotting is a widely used method for detection and quantification of specific proteins extracted from mammalian cells. In the conventional method of protein extraction, we found that collagen-containing gels interfered with detection of the p65 protein (one of the subunits in the NF-κB family of proteins) in human lung adenocarcinoma A549 cells cultured on a collagen gel containing serum. In contrast, the collagen gels did not affect detection of the GAPDH protein. Then, we established an improved method for preparation of protein extracts (using trichloroacetic acid fixation and collagenase treatment) from the cells cultured on the collagen gel. Using the improved method, we were able to detect p65 proteins without loss in A549 cells cultured on a collagen gel under serum-free conditions, but we could not detect the proteins if serum was present in cell culture. Thus, using western blotting and serum-free culture conditions, we succeeded in comparing the p65 expression between the cells grown in a plastic dish and cells grown on a collagen gel. PMID:25005915

  7. Wind erosion induced soil degradation in Northern China: Status, measures and perspective

    Technology Transfer Automated Retrieval System (TEKTRAN)

    : Soil degradation is one of the most serious ecological problems in the world. In arid and semi-arid northern China, soil degradation predominantly arises from wind erosion. Trends in soil degradation caused by wind erosion in northern China frequently change with human activities and climatic chan...

  8. Regulation of nap Gene Expression and Periplasmic Nitrate Reductase Activity in the Phototrophic Bacterium Rhodobacter sphaeroides DSM158

    PubMed Central

    Gavira, Mónica; Roldán, M. Dolores; Castillo, Francisco; Moreno-Vivián, Conrado

    2002-01-01

    Bacterial periplasmic nitrate reductases (Nap) can play different physiological roles and are expressed under different conditions depending on the organism. Rhodobacter sphaeroides DSM158 has a Nap system, encoded by the napKEFDABC gene cluster, but nitrite formed is not further reduced because this strain lacks nitrite reductase. Nap activity increases in the presence of nitrate and oxygen but is unaffected by ammonium. Reverse transcription-PCR and Northern blots demonstrated that the napKEFDABC genes constitute an operon transcribed as a single 5.5-kb product. Northern blots and nap-lacZ fusions revealed that nap expression is threefold higher under aerobic conditions but is regulated by neither nitrate nor ammonium, although it is weakly induced by nitrite. On the other hand, nitrate but not nitrite causes a rapid enzyme activation, explaining the higher Nap activity found in nitrate-grown cells. Translational nap′-′lacZ fusions reveal that the napK and napD genes are not efficiently translated, probably due to mRNA secondary structures occluding the translation initiation sites of these genes. Neither butyrate nor caproate increases nap expression, although cells growing phototrophically on these reduced substrates show a very high Nap activity in vivo (nitrite accumulation is sevenfold higher than in medium with malate). Phototrophic growth on butyrate or caproate medium is severely reduced in the NapA− mutants. Taken together, these results indicate that nitrate reduction in R. sphaeroides is mainly regulated at the level of enzyme activity by both nitrate and electron supply and confirm that the Nap system is involved in redox balancing using nitrate as an ancillary oxidant to dissipate excess reductant. PMID:11872721