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Sample records for adaptive block truncation

  1. Block truncation signature coding for hyperspectral analysis

    NASA Astrophysics Data System (ADS)

    Chakravarty, Sumit; Chang, Chein-I.

    2008-08-01

    This paper introduces a new signature coding which is designed based on the well-known Block Truncation Coding (BTC). It comprises of bit-maps of the signature blocks generated by different threshold criteria. Two new BTC-based algorithms are developed for signature coding, to be called Block Truncation Signature Coding (BTSC) and 2-level BTSC (2BTSC). In order to compare the developed BTC based algorithms with current binary signature coding schemes such as Spectral Program Analysis Manager (SPAM) developed by Mazer et al. and Spectral Feature-based Binary Coding (SFBC) by Qian et al., three different thresholding functions, local block mean, local block gradient, local block correlation are derived to improve the BTSC performance where the combined bit-maps generated by these thresholds can provide better spectral signature characterization. Experimental results reveal that the new BTC-based signature coding performs more effectively in characterizing spectral variations than currently available binary signature coding methods.

  2. Adaptively truncated Hilbert spaces for Hamiltonian-based impurity solvers

    NASA Astrophysics Data System (ADS)

    Go, Ara; Millis, Andrew

    We investigate truncations of the exponentially large Hilbert space in the exact diagonalization (ED) as an impurity solver for the dynamical mean-field theory (DMFT). A key issue is to maintain the high degree of numerical accuracy required in the construction of Greens functions. We test various truncation schemes with similar number of Slater determinants in both Hilbert spaces for the ground state and a particle- or a hole-excited state, and show that the excited states play an important role in accurate computation as well as the ground state. Appropriate truncation for both spaces enables us to compute the accurate self-energy of the impurity Hamiltonian with up to eight correlated orbitals hybridized with a sufficient number of bath orbitals to obtain converged solutions of the self-consistent equation in the DMFT, which is not solvable by the original ED. Application to spin-orbit coupled multi-orbital models and the one-dimensional Hubbard model and comparison to results from exact diagonalization and the configuration interaction based impurity solvers demonstrate the power of the method. This work was supported by the US Department of Energy under Grants No. DE-FG02-04ER46169 and DE-SC0006613.

  3. Implementation of Multimode-Multilevel Block Truncation Coding for LCD Overdrive

    NASA Astrophysics Data System (ADS)

    Oh, Taegeun; Lee, Sanghoon

    The Liquid-crystal display (LCD) overdrive technique has been utilized to reduce motion blur on a display via a reduction in the response time. However, to measure the variation of the pixel amplitudes, it is necessary to store the previous frame using a large frame memory. To downscale the frame memory, block truncation coding (BTC) is commonly employed due to the simplicity of its implementation, even if some visual artifacts may occur for image blocks with high frequency components. In this paper, we present a multimode-multilevel BTC (MBTC) technique that improves performance while maintaining simplicity. To improve the visual quality, we uniquely determine the quantization level and coding mode of each block according to the distribution of the luminance and chrominance amplitudes. For a compression ratio of 6: 1, the proposed method demonstrates higher coding efficiency and overdrive performance by up to 3.81dB in the PSNR compared to other methods.

  4. Content-based image retrieval using features extracted from halftoning-based block truncation coding.

    PubMed

    Guo, Jing-Ming; Prasetyo, Heri

    2015-03-01

    This paper presents a technique for content-based image retrieval (CBIR) by exploiting the advantage of low-complexity ordered-dither block truncation coding (ODBTC) for the generation of image content descriptor. In the encoding step, ODBTC compresses an image block into corresponding quantizers and bitmap image. Two image features are proposed to index an image, namely, color co-occurrence feature (CCF) and bit pattern features (BPF), which are generated directly from the ODBTC encoded data streams without performing the decoding process. The CCF and BPF of an image are simply derived from the two ODBTC quantizers and bitmap, respectively, by involving the visual codebook. Experimental results show that the proposed method is superior to the block truncation coding image retrieval systems and the other earlier methods, and thus prove that the ODBTC scheme is not only suited for image compression, because of its simplicity, but also offers a simple and effective descriptor to index images in CBIR system. PMID:25420264

  5. Deformable image registration of CT and truncated cone-beam CT for adaptive radiation therapy

    NASA Astrophysics Data System (ADS)

    Zhen, Xin; Yan, Hao; Zhou, Linghong; Jia, Xun; Jiang, Steve B.

    2013-11-01

    Truncation of a cone-beam computed tomography (CBCT) image, mainly caused by the limited field of view (FOV) of CBCT imaging, poses challenges to the problem of deformable image registration (DIR) between computed tomography (CT) and CBCT images in adaptive radiation therapy (ART). The missing information outside the CBCT FOV usually causes incorrect deformations when a conventional DIR algorithm is utilized, which may introduce significant errors in subsequent operations such as dose calculation. In this paper, based on the observation that the missing information in the CBCT image domain does exist in the projection image domain, we propose to solve this problem by developing a hybrid deformation/reconstruction algorithm. As opposed to deforming the CT image to match the truncated CBCT image, the CT image is deformed such that its projections match all the corresponding projection images for the CBCT image. An iterative forward-backward projection algorithm is developed. Six head-and-neck cancer patient cases are used to evaluate our algorithm, five with simulated truncation and one with real truncation. It is found that our method can accurately register the CT image to the truncated CBCT image and is robust against image truncation when the portion of the truncated image is less than 40% of the total image. Part of this work was presented at the 54th AAPM Annual Meeting (Charlotte, NC, USA, 29 July-2 August 2012).

  6. Transgenic expression in the liver of truncated Met blocks apoptosis and permits immortalization of hepatocytes.

    PubMed Central

    Amicone, L; Spagnoli, F M; Späth, G; Giordano, S; Tommasini, C; Bernardini, S; De Luca, V; Della Rocca, C; Weiss, M C; Comoglio, P M; Tripodi, M

    1997-01-01

    Hepatocyte growth factor induces proliferation, motility and differentiation of epithelial cells through the tyrosine kinase receptor encoded by the MET protooncogene. The cytoplasmic portion of Met (referred to as cyto-Met) is activated but only weakly transforming. In order to determine the effect of activated Met on hepatocytes, we have targeted truncated Met expression to the liver by incorporating the cDNA into a vector carrying the entire human alpha-1-antitrypsin transcriptional unit. Transgenic expression in the liver of truncated human Met, containing the regulatory and the catalytic cytoplasmic domains, renders hepatocytes constitutively resistant to apoptosis and reproducibly permits immortalization. The emerging stable cell lines are not transformed and maintain a highly differentiated phenotype judged by the retention of epithelial cell polarity and the expression of hepatocyte-enriched transcription factors as well as hepatic products. PMID:9034332

  7. Adaptive truncation of matrix decompositions and efficient estimation of NMR relaxation distributions

    NASA Astrophysics Data System (ADS)

    Teal, Paul D.; Eccles, Craig

    2015-04-01

    The two most successful methods of estimating the distribution of nuclear magnetic resonance relaxation times from two dimensional data are data compression followed by application of the Butler-Reeds-Dawson algorithm, and a primal-dual interior point method using preconditioned conjugate gradient. Both of these methods have previously been presented using a truncated singular value decomposition of matrices representing the exponential kernel. In this paper it is shown that other matrix factorizations are applicable to each of these algorithms, and that these illustrate the different fundamental principles behind the operation of the algorithms. These are the rank-revealing QR (RRQR) factorization and the LDL factorization with diagonal pivoting, also known as the Bunch-Kaufman-Parlett factorization. It is shown that both algorithms can be improved by adaptation of the truncation as the optimization process progresses, improving the accuracy as the optimal value is approached. A variation on the interior method viz, the use of barrier function instead of the primal-dual approach, is found to offer considerable improvement in terms of speed and reliability. A third type of algorithm, related to the algorithm known as Fast iterative shrinkage-thresholding algorithm, is applied to the problem. This method can be efficiently formulated without the use of a matrix decomposition.

  8. Non-iterative adaptive time stepping with truncation error control for simulating variable-density flow

    NASA Astrophysics Data System (ADS)

    Hirthe, E. M.; Graf, T.

    2012-04-01

    Fluid density variations occur due to changes in the solute concentration, temperature and pressure of groundwater. Examples are interaction between freshwater and seawater, radioactive waste disposal, groundwater contamination, and geothermal energy production. The physical coupling between flow and transport introduces non-linearity in the governing mathematical equations, such that solving variable-density flow problems typically requires very long computational time. Computational efficiency can be attained through the use of adaptive time-stepping schemes. The aim of this work is therefore to apply a non-iterative adaptive time-stepping scheme based on local truncation error in variable-density flow problems. That new scheme is implemented into the code of the HydroGeoSphere model (Therrien et al., 2011). The new time-stepping scheme is applied to the Elder (1967) and the Shikaze et al. (1998) problem of free convection in porous and fractured-porous media, respectively. Numerical simulations demonstrate that non-iterative time-stepping based on local truncation error control fully automates the time step size and efficiently limits the temporal discretization error to the user-defined tolerance. Results of the Elder problem show that the new time-stepping scheme presented here is significantly more efficient than uniform time-stepping when high accuracy is required. Results of the Shikaze problem reveal that the new scheme is considerably faster than conventional time-stepping where time step sizes are either constant or controlled by absolute head/concentration changes. Future research will focus on the application of the new time-stepping scheme to variable-density flow in complex real-world fractured-porous rock.

  9. Truncated adaptation design for decentralised neural dynamic surface control of interconnected nonlinear systems under input saturation

    NASA Astrophysics Data System (ADS)

    Gao, Shigen; Dong, Hairong; Lyu, Shihang; Ning, Bin

    2016-07-01

    This paper studies decentralised neural adaptive control of a class of interconnected nonlinear systems, each subsystem is in the presence of input saturation and external disturbance and has independent system order. Using a novel truncated adaptation design, dynamic surface control technique and minimal-learning-parameters algorithm, the proposed method circumvents the problems of 'explosion of complexity' and 'dimension curse' that exist in the traditional backstepping design. Comparing to the methodology that neural weights are online updated in the controllers, only one scalar needs to be updated in the controllers of each subsystem when dealing with unknown systematic dynamics. Radial basis function neural networks (NNs) are used in the online approximation of unknown systematic dynamics. It is proved using Lyapunov stability theory that all the signals in the closed-loop system are semi-globally uniformly ultimately bounded. The tracking errors of each subsystems, the amplitude of NN approximation residuals and external disturbances can be attenuated to arbitrarily small by tuning proper design parameters. Simulation results are given to demonstrate the effectiveness of the proposed method.

  10. Recombinant truncated AniA of pathogenic Neisseria elicits a non-native immune response and functional blocking antibodies

    PubMed Central

    Shewell, Lucy K.; Ku, Shan C.; Schulz, Benjamin L.; Jen, Freda E.-C.; Mubaiwa, Tsitsi D.; Ketterer, Margaret R.; Apicella, Michael A.; Jennings, Michael P.

    2015-01-01

    AniA of the pathogenic Neisseria is glycosylated in its C-terminal repeat region by the pilin glycosylation (pgl) pathway. AniA appears to be unique among bacterial nitrite reductases as it contains an N-terminal extension that includes a lipid modification site as well as a C-terminal extension that is glycosylated. Immunising with various glycoforms of the AniA protein demonstrated a strong humoral immune response to the basal monosaccharide. In addition, when animals were immunised with a truncated form of AniA, completely lacking the glycosylated C-terminal region, the antibody response was directed against AniA regardless of the glycosylation state of the protein. Immuno-SEM confirmed that AniA is expressed on the cell surface in N. gonorrhoeae. Antisera generated against a truncated, non-glycosylated, recombinant form of the AniA protein are capable of blocking nitrite reductase function in a whole cell assay. We propose that recombinant modified AniA has potential as a vaccine antigen for N. gonorrhoeae. PMID:23313483

  11. Global adaptive rank truncated product method for gene-set analysis in association studies.

    PubMed

    Vilor-Tejedor, Natalia; Calle, M Luz

    2014-08-01

    Gene set analysis (GSA) aims to assess the overall association of a set of genetic variants with a phenotype and has the potential to detect subtle effects of variants in a gene or a pathway that might be missed when assessed individually. We present a new implementation of the Adaptive Rank Truncated Product method (ARTP) for analyzing the association of a set of Single Nucleotide Polymorphisms (SNPs) in a gene or pathway. The new implementation, referred to as globalARTP, improves the original one by allowing the different SNPs in the set to have different modes of inheritance. We perform a simulation study for exploring the power of the proposed methodology in a set of scenarios with different numbers of causal SNPs with different effect sizes. Moreover, we show the advantage of using the gene set approach in the context of an Alzheimer's disease case-control study where we explore the endocytosis pathway. The new method is implemented in the R function globalARTP of the globalGSA package available at http://cran.r-project.org. PMID:25082012

  12. Non-iterative adaptive time-stepping scheme with temporal truncation error control for simulating variable-density flow

    NASA Astrophysics Data System (ADS)

    Hirthe, Eugenia M.; Graf, Thomas

    2012-12-01

    The automatic non-iterative second-order time-stepping scheme based on the temporal truncation error proposed by Kavetski et al. [Kavetski D, Binning P, Sloan SW. Non-iterative time-stepping schemes with adaptive truncation error control for the solution of Richards equation. Water Resour Res 2002;38(10):1211, http://dx.doi.org/10.1029/2001WR000720.] is implemented into the code of the HydroGeoSphere model. This time-stepping scheme is applied for the first time to the low-Rayleigh-number thermal Elder problem of free convection in porous media [van Reeuwijk M, Mathias SA, Simmons CT, Ward JD. Insights from a pseudospectral approach to the Elder problem. Water Resour Res 2009;45:W04416, http://dx.doi.org/10.1029/2008WR007421.], and to the solutal [Shikaze SG, Sudicky EA, Schwartz FW. Density-dependent solute transport in discretely-fractured geological media: is prediction possible? J Contam Hydrol 1998;34:273-91] problem of free convection in fractured-porous media. Numerical simulations demonstrate that the proposed scheme efficiently limits the temporal truncation error to a user-defined tolerance by controlling the time-step size. The non-iterative second-order time-stepping scheme can be applied to (i) thermal and solutal variable-density flow problems, (ii) linear and non-linear density functions, and (iii) problems including porous and fractured-porous media.

  13. An adaptive algorithm for removing the blocking artifacts in block-transform coded images

    NASA Astrophysics Data System (ADS)

    Yang, Jingzhong; Ma, Zheng

    2005-11-01

    JPEG and MPEG compression standards adopt the macro block encoding approach, but this method can lead to annoying blocking effects-the artificial rectangular discontinuities in the decoded images. Many powerful postprocessing algorithms have been developed to remove the blocking effects. However, all but the simplest algorithms can be too complex for real-time applications, such as video decoding. We propose an adaptive and easy-to-implement algorithm that can removes the artificial discontinuities. This algorithm contains two steps, firstly, to perform a fast linear smoothing of the block edge's pixel by average value replacement strategy, the next one, by comparing the variance that is derived from the difference of the processed image with a reasonable threshold, to determine whether the first step should stop or not. Experiments have proved that this algorithm can quickly remove the artificial discontinuities without destroying the key information of the decoded images, it is robust to different images and transform strategy.

  14. Truncation of C-terminal 20 amino acids in PA-X contributes to adaptation of swine influenza virus in pigs.

    PubMed

    Xu, Guanlong; Zhang, Xuxiao; Sun, Yipeng; Liu, Qinfang; Sun, Honglei; Xiong, Xin; Jiang, Ming; He, Qiming; Wang, Yu; Pu, Juan; Guo, Xin; Yang, Hanchun; Liu, Jinhua

    2016-01-01

    The PA-X protein is a fusion protein incorporating the N-terminal 191 amino acids of the PA protein with a short C-terminal sequence encoded by an overlapping ORF (X-ORF) in segment 3 that is accessed by + 1 ribosomal frameshifting, and this X-ORF exists in either full length or a truncated form (either 61-or 41-condons). Genetic evolution analysis indicates that all swine influenza viruses (SIVs) possessed full-length PA-X prior to 1985, but since then SIVs with truncated PA-X have gradually increased and become dominant, implying that truncation of this protein may contribute to the adaptation of influenza virus in pigs. To verify this hypothesis, we constructed PA-X extended viruses in the background of a "triple-reassortment" H1N2 SIV with truncated PA-X, and evaluated their biological characteristics in vitro and in vivo. Compared with full-length PA-X, SIV with truncated PA-X had increased viral replication in porcine cells and swine respiratory tissues, along with enhanced pathogenicity, replication and transmissibility in pigs. Furthermore, we found that truncation of PA-X improved the inhibition of IFN-I mRNA expression. Hereby, our results imply that truncation of PA-X may contribute to the adaptation of SIV in pigs. PMID:26912401

  15. Truncation of C-terminal 20 amino acids in PA-X contributes to adaptation of swine influenza virus in pigs

    PubMed Central

    Xu, Guanlong; Zhang, Xuxiao; Sun, Yipeng; Liu, Qinfang; Sun, Honglei; Xiong, Xin; Jiang, Ming; He, Qiming; Wang, Yu; Pu, Juan; Guo, Xin; Yang, Hanchun; Liu, Jinhua

    2016-01-01

    The PA-X protein is a fusion protein incorporating the N-terminal 191 amino acids of the PA protein with a short C-terminal sequence encoded by an overlapping ORF (X-ORF) in segment 3 that is accessed by + 1 ribosomal frameshifting, and this X-ORF exists in either full length or a truncated form (either 61-or 41-condons). Genetic evolution analysis indicates that all swine influenza viruses (SIVs) possessed full-length PA-X prior to 1985, but since then SIVs with truncated PA-X have gradually increased and become dominant, implying that truncation of this protein may contribute to the adaptation of influenza virus in pigs. To verify this hypothesis, we constructed PA-X extended viruses in the background of a “triple-reassortment” H1N2 SIV with truncated PA-X, and evaluated their biological characteristics in vitro and in vivo. Compared with full-length PA-X, SIV with truncated PA-X had increased viral replication in porcine cells and swine respiratory tissues, along with enhanced pathogenicity, replication and transmissibility in pigs. Furthermore, we found that truncation of PA-X improved the inhibition of IFN-I mRNA expression. Hereby, our results imply that truncation of PA-X may contribute to the adaptation of SIV in pigs. PMID:26912401

  16. Synthetic aperture radar signal data compression using block adaptive quantization

    NASA Technical Reports Server (NTRS)

    Kuduvalli, Gopinath; Dutkiewicz, Melanie; Cumming, Ian

    1994-01-01

    This paper describes the design and testing of an on-board SAR signal data compression algorithm for ESA's ENVISAT satellite. The Block Adaptive Quantization (BAQ) algorithm was selected, and optimized for the various operational modes of the ASAR instrument. A flexible BAQ scheme was developed which allows a selection of compression ratio/image quality trade-offs. Test results show the high quality of the SAR images processed from the reconstructed signal data, and the feasibility of on-board implementation using a single ASIC.

  17. Parallel Block Structured Adaptive Mesh Refinement on Graphics Processing Units

    SciTech Connect

    Beckingsale, D. A.; Gaudin, W. P.; Hornung, R. D.; Gunney, B. T.; Gamblin, T.; Herdman, J. A.; Jarvis, S. A.

    2014-11-17

    Block-structured adaptive mesh refinement is a technique that can be used when solving partial differential equations to reduce the number of zones necessary to achieve the required accuracy in areas of interest. These areas (shock fronts, material interfaces, etc.) are recursively covered with finer mesh patches that are grouped into a hierarchy of refinement levels. Despite the potential for large savings in computational requirements and memory usage without a corresponding reduction in accuracy, AMR adds overhead in managing the mesh hierarchy, adding complex communication and data movement requirements to a simulation. In this paper, we describe the design and implementation of a native GPU-based AMR library, including: the classes used to manage data on a mesh patch, the routines used for transferring data between GPUs on different nodes, and the data-parallel operators developed to coarsen and refine mesh data. We validate the performance and accuracy of our implementation using three test problems and two architectures: an eight-node cluster, and over four thousand nodes of Oak Ridge National Laboratory’s Titan supercomputer. Our GPU-based AMR hydrodynamics code performs up to 4.87× faster than the CPU-based implementation, and has been scaled to over four thousand GPUs using a combination of MPI and CUDA.

  18. MR Image Reconstruction Using Block Matching and Adaptive Kernel Methods

    PubMed Central

    Schmidt, Johannes F. M.; Santelli, Claudio; Kozerke, Sebastian

    2016-01-01

    An approach to Magnetic Resonance (MR) image reconstruction from undersampled data is proposed. Undersampling artifacts are removed using an iterative thresholding algorithm applied to nonlinearly transformed image block arrays. Each block array is transformed using kernel principal component analysis where the contribution of each image block to the transform depends in a nonlinear fashion on the distance to other image blocks. Elimination of undersampling artifacts is achieved by conventional principal component analysis in the nonlinear transform domain, projection onto the main components and back-mapping into the image domain. Iterative image reconstruction is performed by interleaving the proposed undersampling artifact removal step and gradient updates enforcing consistency with acquired k-space data. The algorithm is evaluated using retrospectively undersampled MR cardiac cine data and compared to k-t SPARSE-SENSE, block matching with spatial Fourier filtering and k-t ℓ1-SPIRiT reconstruction. Evaluation of image quality and root-mean-squared-error (RMSE) reveal improved image reconstruction for up to 8-fold undersampled data with the proposed approach relative to k-t SPARSE-SENSE, block matching with spatial Fourier filtering and k-t ℓ1-SPIRiT. In conclusion, block matching and kernel methods can be used for effective removal of undersampling artifacts in MR image reconstruction and outperform methods using standard compressed sensing and ℓ1-regularized parallel imaging methods. PMID:27116675

  19. MR Image Reconstruction Using Block Matching and Adaptive Kernel Methods.

    PubMed

    Schmidt, Johannes F M; Santelli, Claudio; Kozerke, Sebastian

    2016-01-01

    An approach to Magnetic Resonance (MR) image reconstruction from undersampled data is proposed. Undersampling artifacts are removed using an iterative thresholding algorithm applied to nonlinearly transformed image block arrays. Each block array is transformed using kernel principal component analysis where the contribution of each image block to the transform depends in a nonlinear fashion on the distance to other image blocks. Elimination of undersampling artifacts is achieved by conventional principal component analysis in the nonlinear transform domain, projection onto the main components and back-mapping into the image domain. Iterative image reconstruction is performed by interleaving the proposed undersampling artifact removal step and gradient updates enforcing consistency with acquired k-space data. The algorithm is evaluated using retrospectively undersampled MR cardiac cine data and compared to k-t SPARSE-SENSE, block matching with spatial Fourier filtering and k-t ℓ1-SPIRiT reconstruction. Evaluation of image quality and root-mean-squared-error (RMSE) reveal improved image reconstruction for up to 8-fold undersampled data with the proposed approach relative to k-t SPARSE-SENSE, block matching with spatial Fourier filtering and k-t ℓ1-SPIRiT. In conclusion, block matching and kernel methods can be used for effective removal of undersampling artifacts in MR image reconstruction and outperform methods using standard compressed sensing and ℓ1-regularized parallel imaging methods. PMID:27116675

  20. Block-adaptive quantum mechanics: an adaptive divide-and-conquer approach to interactive quantum chemistry.

    PubMed

    Bosson, Maël; Grudinin, Sergei; Redon, Stephane

    2013-03-01

    We present a novel Block-Adaptive Quantum Mechanics (BAQM) approach to interactive quantum chemistry. Although quantum chemistry models are known to be computationally demanding, we achieve interactive rates by focusing computational resources on the most active parts of the system. BAQM is based on a divide-and-conquer technique and constrains some nucleus positions and some electronic degrees of freedom on the fly to simplify the simulation. As a result, each time step may be performed significantly faster, which in turn may accelerate attraction to the neighboring local minima. By applying our approach to the nonself-consistent Atom Superposition and Electron Delocalization Molecular Orbital theory, we demonstrate interactive rates and efficient virtual prototyping for systems containing more than a thousand of atoms on a standard desktop computer. PMID:23108532

  1. Block-adaptive filtering and its application to seismic-event detection

    SciTech Connect

    Clark, G.A.

    1981-04-01

    Block digital filtering involves the calculation of a block or finite set of filter output samples from a block of input samples. The motivation for block processing arises from computational advantages of the technique. Block filters take good advantage of parallel processing architectures, which are becoming more and more attractive with the advent of very large scale integrated (VLSI) circuits. This thesis extends the block technique to Wiener and adaptive filters, both of which are statistical filters. The key ingredient to this extension turns out to be the definition of a new performance index, block mean square error (BMSE), which combines the well known sum square error (SSE) and mean square error (MSE). A block adaptive filtering procedure is derived in which the filter coefficients are adjusted once per each output block in accordance with a generalized block least mean-square (BLMS) algorithm. Convergence properties of the BLMS algorithm are studied, including conditions for guaranteed convergence, convergence speed, and convergence accuracy. Simulation examples are given for clarity. Convergence properties of the BLMS and LMS algorithms are analyzed and compared. They are shown to be analogous, and under the proper circumstances, equivalent. The block adaptive filter was applied to the problem of detecting small seismic events in microseismic background noise. The predictor outperformed the world-wide standardized seismograph network (WWSSN) seismometers in improving signal-to-noise ratio (SNR).

  2. A structured multi-block solution-adaptive mesh algorithm with mesh quality assessment

    NASA Technical Reports Server (NTRS)

    Ingram, Clint L.; Laflin, Kelly R.; Mcrae, D. Scott

    1995-01-01

    The dynamic solution adaptive grid algorithm, DSAGA3D, is extended to automatically adapt 2-D structured multi-block grids, including adaption of the block boundaries. The extension is general, requiring only input data concerning block structure, connectivity, and boundary conditions. Imbedded grid singular points are permitted, but must be prevented from moving in space. Solutions for workshop cases 1 and 2 are obtained on multi-block grids and illustrate both increased resolution of and alignment with the solution. A mesh quality assessment criteria is proposed to determine how well a given mesh resolves and aligns with the solution obtained upon it. The criteria is used to evaluate the grid quality for solutions of workshop case 6 obtained on both static and dynamically adapted grids. The results indicate that this criteria shows promise as a means of evaluating resolution.

  3. Block-structured adaptive mesh refinement - theory, implementation and application

    SciTech Connect

    Deiterding, Ralf

    2011-01-01

    Structured adaptive mesh refinement (SAMR) techniques can enable cutting-edge simulations of problems governed by conservation laws. Focusing on the strictly hyperbolic case, these notes explain all algorithmic and mathematical details of a technically relevant implementation tailored for distributed memory computers. An overview of the background of commonly used finite volume discretizations for gas dynamics is included and typical benchmarks to quantify accuracy and performance of the dynamically adaptive code are discussed. Large-scale simulations of shock-induced realistic combustion in non-Cartesian geometry and shock-driven fluid-structure interaction with fully coupled dynamic boundary motion demonstrate the applicability of the discussed techniques for complex scenarios.

  4. The successively temporal error concealment algorithm using error-adaptive block matching principle

    NASA Astrophysics Data System (ADS)

    Lee, Yu-Hsuan; Wu, Tsai-Hsing; Chen, Chao-Chyun

    2014-09-01

    Generally, the temporal error concealment (TEC) adopts the blocks around the corrupted block (CB) as the search pattern to find the best-match block in previous frame. Once the CB is recovered, it is referred to as the recovered block (RB). Although RB can be the search pattern to find the best-match block of another CB, RB is not the same as its original block (OB). The error between the RB and its OB limits the performance of TEC. The successively temporal error concealment (STEC) algorithm is proposed to alleviate this error. The STEC procedure consists of tier-1 and tier-2. The tier-1 divides a corrupted macroblock into four corrupted 8 × 8 blocks and generates a recovering order for them. The corrupted 8 × 8 block with the first place of recovering order is recovered in tier-1, and remaining 8 × 8 CBs are recovered in tier-2 along the recovering order. In tier-2, the error-adaptive block matching principle (EA-BMP) is proposed for the RB as the search pattern to recover remaining corrupted 8 × 8 blocks. The proposed STEC outperforms sophisticated TEC algorithms on average PSNR by 0.3 dB on the packet error rate of 20% at least.

  5. Adaptive stereo medical image watermarking using non-corresponding blocks.

    PubMed

    Mohaghegh, H; Karimi, N; Soroushmehr, S M R; Samavi, S; Najarian, K

    2015-08-01

    Today with the advent of technology in different medical imaging fields, the use of stereoscopic images has increased. Furthermore, with the rapid growth in telemedicine for remote diagnosis, treatment, and surgery, there is a need for watermarking. This is for copyright protection and tracking of digital media. Also, the efficient use of bandwidth for transmission of such data is another concern. In this paper an adaptive watermarking scheme is proposed that considers human visual system in depth perception. Our proposed scheme modifies maximum singular values of wavelet coefficients of stereo pair for embedding watermark bits. Experimental results show high 3D visual quality of watermarked video frames. Moreover, comparison with a compatible state of the art method shows that the proposed method is highly robust against attacks such as AWGN, salt and pepper noise, and JPEG compression. PMID:26737224

  6. Blocking reduction of Landsat Thematic Mapper JPEG browse images using optimal PSNR estimated spectra adaptive postfiltering

    NASA Technical Reports Server (NTRS)

    Linares, Irving; Mersereau, Russell M.; Smith, Mark J. T.

    1994-01-01

    Two representative sample images of Band 4 of the Landsat Thematic Mapper are compressed with the JPEG algorithm at 8:1, 16:1 and 24:1 Compression Ratios for experimental browsing purposes. We then apply the Optimal PSNR Estimated Spectra Adaptive Postfiltering (ESAP) algorithm to reduce the DCT blocking distortion. ESAP reduces the blocking distortion while preserving most of the image's edge information by adaptively postfiltering the decoded image using the block's spectral information already obtainable from each block's DCT coefficients. The algorithm iteratively applied a one dimensional log-sigmoid weighting function to the separable interpolated local block estimated spectra of the decoded image until it converges to the optimal PSNR with respect to the original using a 2-D steepest ascent search. Convergence is obtained in a few iterations for integer parameters. The optimal logsig parameters are transmitted to the decoder as a negligible byte of overhead data. A unique maxima is guaranteed due to the 2-D asymptotic exponential overshoot shape of the surface generated by the algorithm. ESAP is based on a DFT analysis of the DCT basis functions. It is implemented with pixel-by-pixel spatially adaptive separable FIR postfilters. PSNR objective improvements between 0.4 to 0.8 dB are shown together with their corresponding optimal PSNR adaptive postfiltered images.

  7. Parallel architectures for iterative methods on adaptive, block structured grids

    NASA Technical Reports Server (NTRS)

    Gannon, D.; Vanrosendale, J.

    1983-01-01

    A parallel computer architecture well suited to the solution of partial differential equations in complicated geometries is proposed. Algorithms for partial differential equations contain a great deal of parallelism. But this parallelism can be difficult to exploit, particularly on complex problems. One approach to extraction of this parallelism is the use of special purpose architectures tuned to a given problem class. The architecture proposed here is tuned to boundary value problems on complex domains. An adaptive elliptic algorithm which maps effectively onto the proposed architecture is considered in detail. Two levels of parallelism are exploited by the proposed architecture. First, by making use of the freedom one has in grid generation, one can construct grids which are locally regular, permitting a one to one mapping of grids to systolic style processor arrays, at least over small regions. All local parallelism can be extracted by this approach. Second, though there may be a regular global structure to the grids constructed, there will be parallelism at this level. One approach to finding and exploiting this parallelism is to use an architecture having a number of processor clusters connected by a switching network. The use of such a network creates a highly flexible architecture which automatically configures to the problem being solved.

  8. Europlanet IDIS: Adapting existing VO building blocks to Planetary Sciences

    NASA Astrophysics Data System (ADS)

    Cecconi, Baptiste; Jacquey, Christian; Erard, Stéphane; Le Sidaner, Pierre; Andre, Nicolas; Bourrel, Nataliya; Berthier, Jerome; Gangloff, Michel

    2012-07-01

    IDIS (Integrated and Distributed Information System) is part of the Europlanet project. Its purpose is to develop a prototype of a planetology Virtual Observatory (VO). In the frame of its participation to this project, and in collaboration with VO-Paris (Virtual Observatory Paris Data Centre), the CDPP (Data Centre for Plasma Physics, based in Toulouse) has developed a data model to describe the wide variety of data products that can be found in the planetology community, which includes a wide variety of science thematics such as plasma physics, planetary surfaces, interiors, atmospheres or small bodies. This data model is making extensive use of existing standards provided by various groups (IVOA, IPDA, SPASE...) and its scope is to describe the scientific content of datasets, in order to be able to locate and retrieve data files corresponding to a given request. Two generic protocols has been identified for data exchange: PDAP (Planetary Data Access Protocol), developed by IPDA and Obs-TAP (Observation Table Access Protocol), developed by IVOA. In this latter case, Obs-TAP has been adapted to better fit to the planetology community; this protocol is called IDIS-TAP. The data model and the protocols are now tested in collaboration with VO-Paris and other Europlanet IDIS partners. The EuroPlaNet-RI project is funded by the European Commission under the 7th Framework Program, grant 228319 "Capacities Specific Programme".

  9. An object-oriented approach for parallel self adaptive mesh refinement on block structured grids

    NASA Technical Reports Server (NTRS)

    Lemke, Max; Witsch, Kristian; Quinlan, Daniel

    1993-01-01

    Self-adaptive mesh refinement dynamically matches the computational demands of a solver for partial differential equations to the activity in the application's domain. In this paper we present two C++ class libraries, P++ and AMR++, which significantly simplify the development of sophisticated adaptive mesh refinement codes on (massively) parallel distributed memory architectures. The development is based on our previous research in this area. The C++ class libraries provide abstractions to separate the issues of developing parallel adaptive mesh refinement applications into those of parallelism, abstracted by P++, and adaptive mesh refinement, abstracted by AMR++. P++ is a parallel array class library to permit efficient development of architecture independent codes for structured grid applications, and AMR++ provides support for self-adaptive mesh refinement on block-structured grids of rectangular non-overlapping blocks. Using these libraries, the application programmers' work is greatly simplified to primarily specifying the serial single grid application and obtaining the parallel and self-adaptive mesh refinement code with minimal effort. Initial results for simple singular perturbation problems solved by self-adaptive multilevel techniques (FAC, AFAC), being implemented on the basis of prototypes of the P++/AMR++ environment, are presented. Singular perturbation problems frequently arise in large applications, e.g. in the area of computational fluid dynamics. They usually have solutions with layers which require adaptive mesh refinement and fast basic solvers in order to be resolved efficiently.

  10. Combined block-matching and adaptive differential motion estimation in a hierarchical multi-scale framework

    NASA Astrophysics Data System (ADS)

    Brüggemann, Matthias; Kays, Rüdiger; Springer, Paul; Erdler, Oliver

    2015-03-01

    In this paper we present a combination of block-matching and differential motion field estimation. We initialize the motion field using a predictive hierarchical block-matching approach. This vector field is refined by a pixel-recursive differential motion estimation method. We integrate image warping and adaptive filter kernels into the Horn and Schunck differential optical flow estimation approach to break the block structure of the initial correspondence vector fields and compute motion field updates to fulfill the smoothness constraint inside motion boundaries. The influence of occlusion areas is reduced by integrating an in-the-loop occlusion detection and adjusting the adaptive filter weights in the iteration process. We integrate the combined estimation into a hierarchical multi-scale framework. The refined motion on the current scale is upscaled and used as prediction for block-matching motion estimation on the next scale. With the proposed system we are able to combine the advantages of block-matching and differential motion estimation and achieve a dense vector field with floating point precision even for large motion.

  11. Adenine nucleoside diphosphates block adaptation of mechanoelectrical transduction in hair cells.

    PubMed

    Gillespie, P G; Hudspeth, A J

    1993-04-01

    By adapting to sustained stimuli, hair cells in the internal ear retain their sensitivity to minute transient displacements. Because one model for adaptation asserts that this process is mediated by a myosin isozyme, we reasoned that we should be able to arrest adaptation by interfering with myosin's ATPase cycle though introduction of ADP into hair cells. During tight-seal, whole-cell recordings of transduction currents in cells isolated from bullfrog (Rana catesbeiana) sacculus, dialysis with 5-25 mM ADP gave variable results. In half of the cells examined, the rate of adaptation remained unchanged or even increased; adaptation was blocked in the remaining cells. Because we suspected that the variable effect of ADP resulted from the conversion of ADP to ATP by adenylate kinase, we employed the ADP analog adenosine 5'-[beta-thio]diphosphate (ADP[beta S]), which is not a substrate for adenylate kinase. Adaptation consistently disappeared in the presence of 1-10 mM ADP[beta S]; in addition, the transduction channels' open probability at rest grew from approximately 0.1 to 0.8 or more. Both effects could be reversed by 2 mM ATP. When used in conjunction with the adenylate kinase inhibitor P1,P5-bis(5'-adenosyl) pentaphosphate (Ap5A), ADP had effects similar to those of ADP[beta S]. These results suggest that adaptation by hair cells involves adenine nucleotides, and they lend support to the hypothesis that the adaptation process is powered by a myosin motor. PMID:8464880

  12. Low bit rates image compression via adaptive block downsampling and super resolution

    NASA Astrophysics Data System (ADS)

    Chen, Honggang; He, Xiaohai; Ma, Minglang; Qing, Linbo; Teng, Qizhi

    2016-01-01

    A low bit rates image compression framework based on adaptive block downsampling and super resolution (SR) was presented. At the encoder side, the downsampling mode and quantization mode of each 16×16 macroblock are determined adaptively using the ratio distortion optimization method, then the downsampled macroblocks are compressed by the standard JPEG. At the decoder side, the sparse representation-based SR algorithm is applied to recover full resolution macroblocks from decoded blocks. The experimental results show that the proposed framework outperforms the standard JPEG and the state-of-the-art downsampling-based compression methods in terms of both subjective and objective comparisons. Specifically, the peak signal-to-noise ratio gain of the proposed framework over JPEG reaches up to 2 to 4 dB at low bit rates, and the critical bit rate to JPEG is raised to about 2.3 bits per pixel. Moreover, the proposed framework can be extended to other block-based compression schemes.

  13. CRASH: A BLOCK-ADAPTIVE-MESH CODE FOR RADIATIVE SHOCK HYDRODYNAMICS-IMPLEMENTATION AND VERIFICATION

    SciTech Connect

    Van der Holst, B.; Toth, G.; Sokolov, I. V.; Myra, E. S.; Fryxell, B.; Drake, R. P.; Powell, K. G.; Holloway, J. P.; Stout, Q.; Adams, M. L.; Morel, J. E.; Karni, S.

    2011-06-01

    We describe the Center for Radiative Shock Hydrodynamics (CRASH) code, a block-adaptive-mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with a gray or multi-group method and uses a flux-limited diffusion approximation to recover the free-streaming limit. Electrons and ions are allowed to have different temperatures and we include flux-limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite-volume discretization in either one-, two-, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator-split method is used to solve these equations in three substeps: (1) an explicit step of a shock-capturing hydrodynamic solver; (2) a linear advection of the radiation in frequency-logarithm space; and (3) an implicit solution of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The applications are for astrophysics and laboratory astrophysics. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with a new radiation transfer and heat conduction library and equation-of-state and multi-group opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework.

  14. CRASH: A Block-adaptive-mesh Code for Radiative Shock Hydrodynamics—Implementation and Verification

    NASA Astrophysics Data System (ADS)

    van der Holst, B.; Tóth, G.; Sokolov, I. V.; Powell, K. G.; Holloway, J. P.; Myra, E. S.; Stout, Q.; Adams, M. L.; Morel, J. E.; Karni, S.; Fryxell, B.; Drake, R. P.

    2011-06-01

    We describe the Center for Radiative Shock Hydrodynamics (CRASH) code, a block-adaptive-mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with a gray or multi-group method and uses a flux-limited diffusion approximation to recover the free-streaming limit. Electrons and ions are allowed to have different temperatures and we include flux-limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite-volume discretization in either one-, two-, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator-split method is used to solve these equations in three substeps: (1) an explicit step of a shock-capturing hydrodynamic solver; (2) a linear advection of the radiation in frequency-logarithm space; and (3) an implicit solution of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The applications are for astrophysics and laboratory astrophysics. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with a new radiation transfer and heat conduction library and equation-of-state and multi-group opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework.

  15. CRASH: A Block-Adaptive-Mesh Code for Radiative Shock Hydrodynamics

    NASA Astrophysics Data System (ADS)

    van der Holst, B.; Toth, G.; Sokolov, I. V.; Powell, K. G.; Holloway, J. P.; Myra, E. S.; Stout, Q.; Adams, M. L.; Morel, J. E.; Drake, R. P.

    2011-01-01

    We describe the CRASH (Center for Radiative Shock Hydrodynamics) code, a block adaptive mesh code for multi-material radiation hydrodynamics. The implementation solves the radiation diffusion model with the gray or multigroup method and uses a flux limited diffusion approximation to recover the free-streaming limit. The electrons and ions are allowed to have different temperatures and we include a flux limited electron heat conduction. The radiation hydrodynamic equations are solved in the Eulerian frame by means of a conservative finite volume discretization in either one, two, or three-dimensional slab geometry or in two-dimensional cylindrical symmetry. An operator split method is used to solve these equations in three substeps: (1) solve the hydrodynamic equations with shock-capturing schemes, (2) a linear advection of the radiation in frequency-logarithm space, and (3) an implicit solve of the stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test problems to demonstrate the accuracy and performance of the algorithms. The CRASH code is an extension of the Block-Adaptive Tree Solarwind Roe Upwind Scheme (BATS-R-US) code with this new radiation transfer and heat conduction library and equation-of-state and multigroup opacity solvers. Both CRASH and BATS-R-US are part of the publicly available Space Weather Modeling Framework (SWMF).

  16. A progressive data compression scheme based upon adaptive transform coding: Mixture block coding of natural images

    NASA Technical Reports Server (NTRS)

    Rost, Martin C.; Sayood, Khalid

    1991-01-01

    A method for efficiently coding natural images using a vector-quantized variable-blocksized transform source coder is presented. The method, mixture block coding (MBC), incorporates variable-rate coding by using a mixture of discrete cosine transform (DCT) source coders. Which coders are selected to code any given image region is made through a threshold driven distortion criterion. In this paper, MBC is used in two different applications. The base method is concerned with single-pass low-rate image data compression. The second is a natural extension of the base method which allows for low-rate progressive transmission (PT). Since the base method adapts easily to progressive coding, it offers the aesthetic advantage of progressive coding without incorporating extensive channel overhead. Image compression rates of approximately 0.5 bit/pel are demonstrated for both monochrome and color images.

  17. Block structured adaptive mesh and time refinement for hybrid, hyperbolic + N-body systems

    NASA Astrophysics Data System (ADS)

    Miniati, Francesco; Colella, Phillip

    2007-11-01

    We present a new numerical algorithm for the solution of coupled collisional and collisionless systems, based on the block structured adaptive mesh and time refinement strategy (AMR). We describe the issues associated with the discretization of the system equations and the synchronization of the numerical solution on the hierarchy of grid levels. We implement a code based on a higher order, conservative and directionally unsplit Godunov’s method for hydrodynamics; a symmetric, time centered modified symplectic scheme for collisionless component; and a multilevel, multigrid relaxation algorithm for the elliptic equation coupling the two components. Numerical results that illustrate the accuracy of the code and the relative merit of various implemented schemes are also presented.

  18. [Effect of spatial location on the generality of block-wise conflict adaptation between different types of scripts].

    PubMed

    Watanabe, Yurina; Yoshizaki, Kazuhito

    2014-10-01

    This study aimed to investigate the generality of conflict adaptation associated with block-wise conflict frequency between two types of stimulus scripts (Kanji and Hiragana). To this end, we examined whether the modulation of the compatibility effect with one type of script depending on block-wise conflict frequency (75% versus 25% generalized to the other type of script whose block-wise conflict frequency was kept constant (50%), using the Spatial Stroop task. In Experiment 1, 16 participants were required to identify the target orientation (up or down) presented in the upper or lower visual-field. The results showed that block-wise conflict adaptation with one type of stimulus script generalized to the other. The procedure in Experiment 2 was the same as that in Experiment 1, except that the presentation location differed between the two types of stimulus scripts. We did not find a generalization from one script to the other. These results suggest that presentation location is a critical factor contributing to the generality of block-wise conflict adaptation. PMID:25486848

  19. [Effect of spatial location on the generality of block-wise conflict adaptation between different types of scripts].

    PubMed

    Watanabe, Yurina; Yoshizaki, Kazuhito

    2014-10-01

    This study aimed to investigate the generality of conflict adaptation associated with block-wise conflict frequency between two types of stimulus scripts (Kanji and Hiragana). To this end, we examined whether the modulation of the compatibility effect with one type of script depending on block-wise conflict frequency (75% versus 25% generalized to the other type of script whose block-wise conflict frequency was kept constant (50%), using the Spatial Stroop task. In Experiment 1, 16 participants were required to identify the target orientation (up or down) presented in the upper or lower visual-field. The results showed that block-wise conflict adaptation with one type of stimulus script generalized to the other. The procedure in Experiment 2 was the same as that in Experiment 1, except that the presentation location differed between the two types of stimulus scripts. We did not find a generalization from one script to the other. These results suggest that presentation location is a critical factor contributing to the generality of block-wise conflict adaptation. PMID:25508979

  20. The generalized frequency-domain adaptive filtering algorithm as an approximation of the block recursive least-squares algorithm

    NASA Astrophysics Data System (ADS)

    Schneider, Martin; Kellermann, Walter

    2016-01-01

    Acoustic echo cancellation (AEC) is a well-known application of adaptive filters in communication acoustics. To implement AEC for multichannel reproduction systems, powerful adaptation algorithms like the generalized frequency-domain adaptive filtering (GFDAF) algorithm are required for satisfactory convergence behavior. In this paper, the GFDAF algorithm is rigorously derived as an approximation of the block recursive least-squares (RLS) algorithm. Thereby, the original formulation of the GFDAF algorithm is generalized while avoiding an error that has been in the original derivation. The presented algorithm formulation is applied to pruned transform-domain loudspeaker-enclosure-microphone models in a mathematically consistent manner. Such pruned models have recently been proposed to cope with the tremendous computational demands of massive multichannel AEC. Beyond its generalization, a regularization of the GFDAF is shown to have a close relation to the well-known block least-mean-squares algorithm.

  1. Using high-order methods on adaptively refined block-structured meshes - discretizations, interpolations, and filters.

    SciTech Connect

    Ray, Jaideep; Lefantzi, Sophia; Najm, Habib N.; Kennedy, Christopher A.

    2006-01-01

    Block-structured adaptively refined meshes (SAMR) strive for efficient resolution of partial differential equations (PDEs) solved on large computational domains by clustering mesh points only where required by large gradients. Previous work has indicated that fourth-order convergence can be achieved on such meshes by using a suitable combination of high-order discretizations, interpolations, and filters and can deliver significant computational savings over conventional second-order methods at engineering error tolerances. In this paper, we explore the interactions between the errors introduced by discretizations, interpolations and filters. We develop general expressions for high-order discretizations, interpolations, and filters, in multiple dimensions, using a Fourier approach, facilitating the high-order SAMR implementation. We derive a formulation for the necessary interpolation order for given discretization and derivative orders. We also illustrate this order relationship empirically using one and two-dimensional model problems on refined meshes. We study the observed increase in accuracy with increasing interpolation order. We also examine the empirically observed order of convergence, as the effective resolution of the mesh is increased by successively adding levels of refinement, with different orders of discretization, interpolation, or filtering.

  2. Despeckling algorithm on ultrasonic image using adaptive block-based singular value decomposition

    NASA Astrophysics Data System (ADS)

    Sae-Bae, Napa; Udomhunsakul, Somkait

    2008-03-01

    Speckle noise reduction is an important technique to enhance the quality of ultrasonic image. In this paper, a despeckling algorithm based on an adaptive block-based singular value decomposition filtering (BSVD) applied on ultrasonic images is presented. Instead of applying BSVD directly to ultrasonic image, we propose to apply BSVD on the noisy edge image version obtained from the difference between the logarithmic transformations of the original image and blur image version of its. The recovered image is performed by combining the speckle noise-free edge image with blur image version of its. Finally, exponential transformation is applied in order to get the reconstructed image. To evaluate our algorithm compared with well-know algorithms such as Lee filter, Kuan filter, Homomorphic Wiener filter, median filter and wavelet soft thresholding, four image quality measurements, which are Mean Square Error (MSE), Signal to MSE (S/MSE), Edge preservation (β), and Correlation measurement (ρ), are used. From the results, it clearly shows that the proposed algorithm outperforms other methods in terms of quantitative and subjective assessments.

  3. Investigation of instabilities affecting detonations: Improving the resolution using block-structured adaptive mesh refinement

    NASA Astrophysics Data System (ADS)

    Ravindran, Prashaanth

    The unstable nature of detonation waves is a result of the critical relationship between the hydrodynamic shock and the chemical reactions sustaining the shock. A perturbative analysis of the critical point is quite challenging due to the multiple spatio-temporal scales involved along with the non-linear nature of the shock-reaction mechanism. The author's research attempts to provide detailed resolution of the instabilities at the shock front. Another key aspect of the present research is to develop an understanding of the causality between the non-linear dynamics of the front and the eventual breakdown of the sub-structures. An accurate numerical simulation of detonation waves requires a very efficient solution of the Euler equations in conservation form with detailed, non-equilibrium chemistry. The difference in the flow and reaction length scales results in very stiff source terms, requiring the problem to be solved with adaptive mesh refinement. For this purpose, Berger-Colella's block-structured adaptive mesh refinement (AMR) strategy has been developed and applied to time-explicit finite volume methods. The block-structured technique uses a hierarchy of parent-child sub-grids, integrated recursively over time. One novel approach to partition the problem within a large supercomputer was the use of modified Peano-Hilbert space filling curves. The AMR framework was merged with CLAWPACK, a package providing finite volume numerical methods tailored for wave-propagation problems. The stiffness problem is bypassed by using a 1st order Godunov or a 2nd order Strang splitting technique, where the flow variables and source terms are integrated independently. A linearly explicit fourth-order Runge-Kutta integrator is used for the flow, and an ODE solver was used to overcome the numerical stiffness. Second-order spatial resolution is obtained by using a second-order Roe-HLL scheme with the inclusion of numerical viscosity to stabilize the solution near the discontinuity

  4. Adaptive block-wise alphabet reduction scheme for lossless compression of images with sparse and locally sparse histograms

    NASA Astrophysics Data System (ADS)

    Masmoudi, Atef; Zouari, Sonia; Ghribi, Abdelaziz

    2015-11-01

    We propose a new adaptive block-wise lossless image compression algorithm, which is based on the so-called alphabet reduction scheme combined with an adaptive arithmetic coding (AC). This new encoding algorithm is particularly efficient for lossless compression of images with sparse and locally sparse histograms. AC is a very efficient technique for lossless data compression and produces a rate that is close to the entropy; however, a compression performance loss occurs when encoding images or blocks with a limited number of active symbols by comparison with the number of symbols in the nominal alphabet, which consists in the amplification of the zero frequency problem. Generally, most methods add one to the frequency count of each symbol from the nominal alphabet, which leads to a statistical model distortion, and therefore reduces the efficiency of the AC. The aim of this work is to overcome this drawback by assigning to each image block the smallest possible set including all the existing symbols called active symbols. This is an alternative of using the nominal alphabet when applying the conventional arithmetic encoders. We show experimentally that the proposed method outperforms several lossless image compression encoders and standards including the conventional arithmetic encoders, JPEG2000, and JPEG-LS.

  5. Adaption of the Cytokinesis-Block Micronucleus Cytome Assay for Improved Triage Biodosimetry.

    PubMed

    Beinke, C; Port, M; Riecke, A; Ruf, C G; Abend, M

    2016-05-01

    The purpose of this work was to adapt a more advanced form of the cytokinesis-block micronucleus (CBMN) cytome assay for triage biodosimetry in the event of a mass casualty radiation incident. We modified scoring procedures for the CBMN cytome assay to optimize field deployability, dose range, accuracy, speed, economy, simplicity and stability. Peripheral blood of 20 donors was irradiated in vitro (0-6 Gy X ray, maximum photon energy 240 keV) and processed for CBMN. Initially, we assessed two manual scoring strategies for accuracy: 1. Conventional scoring, comprised of micronucleus (MN) frequency per 1,000 binucleated (BN) cells (MN/1,000 BN cells); and 2. Evaluation of 1,000, 2,000 and 3,000 cells in total and different cellular subsets based on MN formation and proliferation (e.g., BN cells with and without MN, mononucleated cells). We used linear and logistic regression models to identify the cellular subsets related closest to dose with the best discrimination ability among different doses/dose categories. We validated the most promising subsets and their combinations with 16 blind samples covering a dose range of 0-8.3 Gy. Linear dose-response relationships comparable to the conventional CBMN assay (r(2) = 0.86) were found for BN cells with MN (r(2) = 0.84) and BN cells without MN (r(2) = 0.84). Models of combined cell counts (CCC) of BN cells with and without MN (BN(+MN) and BN(-MN)) with mononucleated cells (Mono) improved this relationship (r(2) = 0.92). Conventional CBMN discriminated dose categories up to 3 Gy with a concordance between 0.96-1.0 upon scoring 1,000 total cells. In 1,000 BN cells, concordances were observed for conventional CBMN up to 4 Gy as well as BN(+MN) or BN(-MN) (about 0.85). At doses of 4-6 Gy, the concordance of conventional CBMN, BN(+MN) and BN(-MN) declined (about 0.55). We found about 20% higher concordance and more precise dose estimates of irradiated and blinded samples for CCC (Mono + BN(+MN)) after scoring 1,000 total cells

  6. Investigation of Truncated Waveguides

    NASA Technical Reports Server (NTRS)

    Lourie, Nathan P.; Chuss, David T.; Henry, Ross M.; Wollack, Edward J.

    2013-01-01

    The design, fabrication, and performance of truncated circular and square waveguide cross-sections are presented. An emphasis is placed upon numerical and experimental validation of simple analytical formulae that describe the propagation properties of these structures. A test component, a 90-degree phase shifter, was fabricated and tested at 30 GHz. The concepts explored can be directly applied in the design, synthesis and optimization of components in the microwave to sub-millimeter wavebands.

  7. Bite-Block Perturbation in People Who Stutter: Immediate Compensatory and Delayed Adaptive Processes

    ERIC Educational Resources Information Center

    Namasivayam, Aravind Kumar; van Lieshout, Pascal; De Nil, Luc

    2008-01-01

    This exploratory study investigated sensory-motor mechanisms in five people who stutter (PWS) and five people who do not (PNS). Lip kinematic and coordination data were recorded as they produced bi-syllabic nonwords at two rates (normal and fast) in three conditions (jaw-free, immediately after insertion of a bite-block, and after a 10-min…

  8. Adaptation of a Multi-Block Structured Solver for Effective Use in a Hybrid CPU/GPU Massively Parallel Environment

    NASA Astrophysics Data System (ADS)

    Gutzwiller, David; Gontier, Mathieu; Demeulenaere, Alain

    2014-11-01

    Multi-Block structured solvers hold many advantages over their unstructured counterparts, such as a smaller memory footprint and efficient serial performance. Historically, multi-block structured solvers have not been easily adapted for use in a High Performance Computing (HPC) environment, and the recent trend towards hybrid GPU/CPU architectures has further complicated the situation. This paper will elaborate on developments and innovations applied to the NUMECA FINE/Turbo solver that have allowed near-linear scalability with real-world problems on over 250 hybrid GPU/GPU cluster nodes. Discussion will focus on the implementation of virtual partitioning and load balancing algorithms using a novel meta-block concept. This implementation is transparent to the user, allowing all pre- and post-processing steps to be performed using a simple, unpartitioned grid topology. Additional discussion will elaborate on developments that have improved parallel performance, including fully parallel I/O with the ADIOS API and the GPU porting of the computationally heavy CPUBooster convergence acceleration module. Head of HPC and Release Management, Numeca International.

  9. Dichloroacetate blocks aerobic glycolytic adaptation to attenuated measles virus and promotes viral replication leading to enhanced oncolysis in glioblastoma.

    PubMed

    Li, Chunyan; Meng, Gang; Su, Lei; Chen, Aiping; Xia, Mao; Xu, Chun; Yu, Decai; Jiang, Aiqin; Wei, Jiwu

    2015-01-30

    Targeting reprogrammed energy metabolism such as aerobic glycolysis is a potential strategy for cancer treatment. However, tumors exhibiting low-rate glycolysis or metabolic heterogeneity might be resistant to such treatment. We hypothesized that a therapeutic modality that drove cancer cells to high-rate glycolysis might sensitize cancer cells to interference directed against metabolic flux. In this study, we found that attenuated oncolytic measles virus Edmonston strain (MV-Edm) caused glioblastoma cells to shift to high-rate aerobic glycolysis; this adaptation was blocked by dichloroacetate (DCA), an inhibitor of glycolysis, leading to profound cell death of cancer cells but not of normal cells. DCA enhanced viral replication by mitigating mitochondrial antiviral signaling protein (MAVS)-mediated innate immune responses. In a subcutaneous glioblastoma (GBM) xenograft mouse model, low-dose MV-Edm and DCA significantly inhibited tumor growth in vivo. We found that DCA impaired glycolysis (blocking bioenergetic generation) and enhanced viral replication (increasing bioenergetic consumption), which, in combination, accelerated bioenergetic exhaustion leading to necrotic cell death. Taken together, oncolytic MV-Edm sensitized cancer cells to DCA, and in parallel, DCA promoted viral replication, thus, improving oncolysis. This novel therapeutic approach should be readily incorporated into clinical trials. PMID:25575816

  10. An efficient second-order accurate and continuous interpolation for block-adaptive grids

    NASA Astrophysics Data System (ADS)

    Borovikov, Dmitry; Sokolov, Igor V.; Tóth, Gábor

    2015-09-01

    In this paper we present a second-order and continuous interpolation algorithm for cell-centered adaptive-mesh-refinement (AMR) grids. Continuity requirement poses a non-trivial problem at resolution changes. We develop a classification of the resolution changes, which allows us to employ efficient and simple linear interpolation in the majority of the computational domain. The algorithm is well suited for massively parallel computations. Our interpolation algorithm allows extracting jump-free interpolated data distribution along lines and surfaces within the computational domain. This capability is important for various applications, including kinetic particles tracking in three dimensional vector fields, visualization (i.e. surface extraction) and extracting variables along one-dimensional curves such as field lines, streamlines and satellite trajectories, etc. Particular examples are models for acceleration of solar energetic particles (SEPs) along magnetic field-lines. As such models are sensitive to sharp gradients and discontinuities the capability to interpolate the data from the AMR grid to be passed to the SEP model without producing false gradients numerically becomes crucial. We provide a complete description of the algorithm and make the code publicly available as a Fortran 90 library.

  11. In Vivo Assessment of NS1-Truncated Influenza Virus with a Novel SLSYSINWRH Motif as a Self-Adjuvanting Live Attenuated Vaccine

    PubMed Central

    Ngunjiri, John M.; Ali, Ahmed; Boyaka, Prosper; Lee, Chang-Won

    2015-01-01

    Mutants of influenza virus that encode C-terminally truncated NS1 proteins (NS1-truncated mutants) characteristically induce high interferon responses. The dual activity of interferon in blocking virus replication and enhancing the development of adaptive immune responses makes these mutants promising as self-adjuvanting live-attenuated influenza vaccine (LAIV) candidates. Yet, among the NS1-truncated mutants, the length of NS1 is not directly correlated with the interferon-inducing efficiency, the level of attenuation, or effectiveness as LAIV. Using quantitative in vitro biologically active particle subpopulation analysis as a tool to identify potential LAIV candidates from a pool of NS1-truncated mutants, we previously predicted that a NS1-truncated mutant pc2, which was less effective as a LAIV in chickens, would be sufficiently effective as a LAIV in mammalian hosts. In this study, we confirmed that pc2 protected mice and pigs against heterologous virus challenge in terms of preventing clinical signs and reducing virus shedding. pc2 expresses a unique SLSYSINWRH motif at the C-terminus of its truncated NS1. Deletion of the SLSYSINWRH motif led to ~821-fold reduction in the peak yield of type I interferon induced in murine cells. Furthermore, replacement of the SLSYSINWRH motif with the wildtype MVKMDQAIMD sequence did not restore the interferon-inducing efficiency. The diminished interferon induction capacity in the absence of the SLSYSINWRH motif was similar to that observed in other mutants which are less effective LAIV candidates. Remarkably, pc2 induced 16-fold or more interferon in human lung and monkey kidney cells compared to the temperature-sensitive, cold-adapted Ann Arbor virus that is currently used as a master backbone for LAIVs such as FluMist. Although the mechanism by which the SLSYSINWRH motif regulates the vaccine properties of pc2 has not been elucidated, this motif has potential use in engineering self-adjuvanting NS1-truncated-based LAIVs

  12. In vivo assessment of NS1-truncated influenza virus with a novel SLSYSINWRH motif as a self-adjuvanting live attenuated vaccine.

    PubMed

    Ngunjiri, John M; Ali, Ahmed; Boyaka, Prosper; Marcus, Philip I; Lee, Chang-Won

    2015-01-01

    Mutants of influenza virus that encode C-terminally truncated NS1 proteins (NS1-truncated mutants) characteristically induce high interferon responses. The dual activity of interferon in blocking virus replication and enhancing the development of adaptive immune responses makes these mutants promising as self-adjuvanting live-attenuated influenza vaccine (LAIV) candidates. Yet, among the NS1-truncated mutants, the length of NS1 is not directly correlated with the interferon-inducing efficiency, the level of attenuation, or effectiveness as LAIV. Using quantitative in vitro biologically active particle subpopulation analysis as a tool to identify potential LAIV candidates from a pool of NS1-truncated mutants, we previously predicted that a NS1-truncated mutant pc2, which was less effective as a LAIV in chickens, would be sufficiently effective as a LAIV in mammalian hosts. In this study, we confirmed that pc2 protected mice and pigs against heterologous virus challenge in terms of preventing clinical signs and reducing virus shedding. pc2 expresses a unique SLSYSINWRH motif at the C-terminus of its truncated NS1. Deletion of the SLSYSINWRH motif led to ~821-fold reduction in the peak yield of type I interferon induced in murine cells. Furthermore, replacement of the SLSYSINWRH motif with the wildtype MVKMDQAIMD sequence did not restore the interferon-inducing efficiency. The diminished interferon induction capacity in the absence of the SLSYSINWRH motif was similar to that observed in other mutants which are less effective LAIV candidates. Remarkably, pc2 induced 16-fold or more interferon in human lung and monkey kidney cells compared to the temperature-sensitive, cold-adapted Ann Arbor virus that is currently used as a master backbone for LAIVs such as FluMist. Although the mechanism by which the SLSYSINWRH motif regulates the vaccine properties of pc2 has not been elucidated, this motif has potential use in engineering self-adjuvanting NS1-truncated-based LAIVs

  13. Calcium channel blockers protect against aluminium-induced DNA damage and block adaptive response to genotoxic stress in plant cells.

    PubMed

    Achary, V Mohan M; Parinandi, Narasimham L; Panda, Brahma B

    2013-03-18

    Calcium is an important second messenger in signal transduction pathways. The role of Ca(2+) signalling in Al-induced DNA damage, cell death, and adaptive response to genotoxic stress caused by ethyl methanesulfonate (EMS) or methylmercuric chloride (MMCl) in the root cells of Allium cepa was investigated in the current study. Root cells in planta were treated with Al(3+) (800μM of AlCl(3)) for 3h without or with 2h pre-treatment with the Ca(2+) chelator (EGTA) or Ca(2+) channel blockers (lanthanum chloride, verapamil) or CaM/CDPK antagonist (W7). In addition, root cells in planta were conditioned by treatment with Al(3+) (5 or 10μM of AlCl(3)) for 2h followed by the genotoxic challenge with MMCl (1.25μM) or EMS (2.5 or 5mM) for 3h without or with the pre-treatment of the chosen Ca(2+) chelator/channel blockers/antagonist. Following the treatments, cell death and DNA damage were investigated in the root cells by comet assay. Furthermore, genotoxicity in the root meristems was determined after 18-30h of recovery. These results revealed that Al(3+) (800μM) significantly induced DNA damage and cell death in the root cells of A. cepa. On the other hand, conditioning of the root cells with Al(3+) at low concentrations (5 or 10μM) offered adaptive response leading to the protection against genotoxic stress induced by MMCl and EMS. Pre-treatment of root cells with the Ca(2+) chelator/channel blockers/antagonist not only alleviated Al(3+)-induced DNA damage and cell death induced but also blocked the Al(3+)-mediated adaptive response to genotoxic stress induced by MMCl and EMS. For the first time, the results of the present study highlighted the role of Ca(2+) signalling underlying the biphasic mode of action of Al(3+) that induced DNA damage and cell death at high doses and offered adaptation to genotoxic response in plants at low doses. PMID:23313746

  14. Focusing of truncated Gaussian beams

    NASA Astrophysics Data System (ADS)

    Horváth, Zoltán L.; Bor, Zsolt

    2003-07-01

    It is shown that the focusing of truncated Gaussian beams can be treated by the same manner as uniform spherical waves, i.e., the diffraction integral can be expressed by the Lommel functions, which offers a very efficient way for the calculation of the three-dimensional light distribution near focus. All the expressions for the uniform spherical waves hold good for Gaussian beams if the first variable in the Lommel functions is extended to the complex domain. The intensity distribution depending on the Fresnel number and the truncation coefficient is calculated. The location of the first few minima and maxima of the intensity in focal plane is given for different values of the truncation coefficient. The phase behavior depending on the truncation coefficient is studied.

  15. A Truncated Waveguide Phase Shifter

    NASA Technical Reports Server (NTRS)

    Lourie, Nathan P.; Chuss, D. T.; Henry, R.; Wollack, E. J.

    2011-01-01

    The design, fabrication and performance of a simple phase shifter based upon truncated circular and square waveguides is presented. An emphasis is placed upon validation of simple analytical formulae that describe the propagation properties of the structure. A test device is prototyped at approximately 40GHz; however, the concepts explored can be directly extended to millimeter and submillimeter applications.

  16. Truncated States Obtained by Iteration

    NASA Astrophysics Data System (ADS)

    Cardoso B., W.; Almeida G. de, N.

    2008-02-01

    We introduce the concept of truncated states obtained via iterative processes (TSI) and study its statistical features, making an analogy with dynamical systems theory (DST). As a specific example, we have studied TSI for the doubling and the logistic functions, which are standard functions in studying chaos. TSI for both the doubling and logistic functions exhibit certain similar patterns when their statistical features are compared from the point of view of DST.

  17. Adaptation.

    PubMed

    Broom, Donald M

    2006-01-01

    The term adaptation is used in biology in three different ways. It may refer to changes which occur at the cell and organ level, or at the individual level, or at the level of gene action and evolutionary processes. Adaptation by cells, especially nerve cells helps in: communication within the body, the distinguishing of stimuli, the avoidance of overload and the conservation of energy. The time course and complexity of these mechanisms varies. Adaptive characters of organisms, including adaptive behaviours, increase fitness so this adaptation is evolutionary. The major part of this paper concerns adaptation by individuals and its relationships to welfare. In complex animals, feed forward control is widely used. Individuals predict problems and adapt by acting before the environmental effect is substantial. Much of adaptation involves brain control and animals have a set of needs, located in the brain and acting largely via motivational mechanisms, to regulate life. Needs may be for resources but are also for actions and stimuli which are part of the mechanism which has evolved to obtain the resources. Hence pigs do not just need food but need to be able to carry out actions like rooting in earth or manipulating materials which are part of foraging behaviour. The welfare of an individual is its state as regards its attempts to cope with its environment. This state includes various adaptive mechanisms including feelings and those which cope with disease. The part of welfare which is concerned with coping with pathology is health. Disease, which implies some significant effect of pathology, always results in poor welfare. Welfare varies over a range from very good, when adaptation is effective and there are feelings of pleasure or contentment, to very poor. A key point concerning the concept of individual adaptation in relation to welfare is that welfare may be good or poor while adaptation is occurring. Some adaptation is very easy and energetically cheap and

  18. Performance of a Block Structured, Hierarchical Adaptive MeshRefinement Code on the 64k Node IBM BlueGene/L Computer

    SciTech Connect

    Greenough, Jeffrey A.; de Supinski, Bronis R.; Yates, Robert K.; Rendleman, Charles A.; Skinner, David; Beckner, Vince; Lijewski, Mike; Bell, John; Sexton, James C.

    2005-04-25

    We describe the performance of the block-structured Adaptive Mesh Refinement (AMR) code Raptor on the 32k node IBM BlueGene/L computer. This machine represents a significant step forward towards petascale computing. As such, it presents Raptor with many challenges for utilizing the hardware efficiently. In terms of performance, Raptor shows excellent weak and strong scaling when running in single level mode (no adaptivity). Hardware performance monitors show Raptor achieves an aggregate performance of 3:0 Tflops in the main integration kernel on the 32k system. Results from preliminary AMR runs on a prototype astrophysical problem demonstrate the efficiency of the current software when running at large scale. The BG/L system is enabling a physics problem to be considered that represents a factor of 64 increase in overall size compared to the largest ones of this type computed to date. Finally, we provide a description of the development work currently underway to address our inefficiencies.

  19. Adapt

    NASA Astrophysics Data System (ADS)

    Bargatze, L. F.

    2015-12-01

    Active Data Archive Product Tracking (ADAPT) is a collection of software routines that permits one to generate XML metadata files to describe and register data products in support of the NASA Heliophysics Virtual Observatory VxO effort. ADAPT is also a philosophy. The ADAPT concept is to use any and all available metadata associated with scientific data to produce XML metadata descriptions in a consistent, uniform, and organized fashion to provide blanket access to the full complement of data stored on a targeted data server. In this poster, we present an application of ADAPT to describe all of the data products that are stored by using the Common Data File (CDF) format served out by the CDAWEB and SPDF data servers hosted at the NASA Goddard Space Flight Center. These data servers are the primary repositories for NASA Heliophysics data. For this purpose, the ADAPT routines have been used to generate data resource descriptions by using an XML schema named Space Physics Archive, Search, and Extract (SPASE). SPASE is the designated standard for documenting Heliophysics data products, as adopted by the Heliophysics Data and Model Consortium. The set of SPASE XML resource descriptions produced by ADAPT includes high-level descriptions of numerical data products, display data products, or catalogs and also includes low-level "Granule" descriptions. A SPASE Granule is effectively a universal access metadata resource; a Granule associates an individual data file (e.g. a CDF file) with a "parent" high-level data resource description, assigns a resource identifier to the file, and lists the corresponding assess URL(s). The CDAWEB and SPDF file systems were queried to provide the input required by the ADAPT software to create an initial set of SPASE metadata resource descriptions. Then, the CDAWEB and SPDF data repositories were queried subsequently on a nightly basis and the CDF file lists were checked for any changes such as the occurrence of new, modified, or deleted

  20. Effect of blocking the Na+/K+ ATPase on Ca2+ extrusion and light adaptation in mammalian retinal rods.

    PubMed Central

    Demontis, G C; Ratto, G M; Bisti, S; Cervetto, L

    1995-01-01

    Membrane current and light response were recorded from rods of monkey and guinea pig by means of suction electrodes. The correlation between adaptation and the Na+/K+ pump was investigated by measuring light-dependent changes in sensitivity with and without inhibition of Na+/K+ ATPase by strophanthidin. Strophanthidin was found to reduce the dark current, to slow the time course of the photoresponse, and to increase light sensitivity. At concentrations between 20 and 500 nM, the pump inhibitor suppressed in a reversible way the current re-activation occurring during prolonged illumination and modified the light-dependent decrease in sensitivity, which in control conditions approximates to a Weber-Fechner function. The effects of the pump inhibitor on the adaptive properties of rods are associated with an increased time constant of the membrane current attributed to the operation of the Na+:Ca2+,K+ exchanger. The effects of rapid application of the pump inhibitor on the current re-activation are consistent with the idea that significant changes in the internal sodium occur in rods of mammals during background illumination and that they play an important role in the process of light adaptation. PMID:8527658

  1. Phase behavior of a family of truncated hard cubes.

    PubMed

    Gantapara, Anjan P; de Graaf, Joost; van Roij, René; Dijkstra, Marjolein

    2015-02-01

    In continuation of our work in Gantapara et al., [Phys. Rev. Lett. 111, 015501 (2013)], we investigate here the thermodynamic phase behavior of a family of truncated hard cubes, for which the shape evolves smoothly from a cube via a cuboctahedron to an octahedron. We used Monte Carlo simulations and free-energy calculations to establish the full phase diagram. This phase diagram exhibits a remarkable richness in crystal and mesophase structures, depending sensitively on the precise particle shape. In addition, we examined in detail the nature of the plastic crystal (rotator) phases that appear for intermediate densities and levels of truncation. Our results allow us to probe the relation between phase behavior and building-block shape and to further the understanding of rotator phases. Furthermore, the phase diagram presented here should prove instrumental for guiding future experimental studies on similarly shaped nanoparticles and the creation of new materials. PMID:25662665

  2. Phase behavior of a family of truncated hard cubes

    SciTech Connect

    Gantapara, Anjan P. Dijkstra, Marjolein; Graaf, Joost de; Roij, René van

    2015-02-07

    In continuation of our work in Gantapara et al., [Phys. Rev. Lett. 111, 015501 (2013)], we investigate here the thermodynamic phase behavior of a family of truncated hard cubes, for which the shape evolves smoothly from a cube via a cuboctahedron to an octahedron. We used Monte Carlo simulations and free-energy calculations to establish the full phase diagram. This phase diagram exhibits a remarkable richness in crystal and mesophase structures, depending sensitively on the precise particle shape. In addition, we examined in detail the nature of the plastic crystal (rotator) phases that appear for intermediate densities and levels of truncation. Our results allow us to probe the relation between phase behavior and building-block shape and to further the understanding of rotator phases. Furthermore, the phase diagram presented here should prove instrumental for guiding future experimental studies on similarly shaped nanoparticles and the creation of new materials.

  3. Lamp with a truncated reflector cup

    DOEpatents

    Li, Ming; Allen, Steven C.; Bazydola, Sarah; Ghiu, Camil-Daniel

    2013-10-15

    A lamp assembly, and method for making same. The lamp assembly includes first and second truncated reflector cups. The lamp assembly also includes at least one base plate disposed between the first and second truncated reflector cups, and a light engine disposed on a top surface of the at least one base plate. The light engine is configured to emit light to be reflected by one of the first and second truncated reflector cups.

  4. Reducing Truncation Error In Integer Processing

    NASA Technical Reports Server (NTRS)

    Thomas, J. Brooks; Berner, Jeffrey B.; Graham, J. Scott

    1995-01-01

    Improved method of rounding off (truncation of least-significant bits) in integer processing of data devised. Provides for reduction, to extremely low value, of numerical bias otherwise generated by accumulation of truncation errors from many arithmetic operations. Devised for use in integer signal processing, in which rescaling and truncation usually performed to reduce number of bits, which typically builds up in sequence of operations. Essence of method to alternate direction of roundoff (plus, then minus) on alternate occurrences of truncated values contributing to bias.

  5. Effect of blocking tactile information from the fingertips on adaptation and execution of grip forces to friction at the grasping surface.

    PubMed

    Bilaloglu, Seda; Lu, Ying; Geller, Daniel; Rizzo, John Ross; Aluru, Viswanath; Gardner, Esther P; Raghavan, Preeti

    2016-03-01

    Adaptation of fingertip forces to friction at the grasping surface is necessary to prevent use of inadequate or excessive grip forces. In the current study we investigated the effect of blocking tactile information from the fingertips noninvasively on the adaptation and efficiency of grip forces to surface friction during precision grasp. Ten neurologically intact subjects grasped and lifted an instrumented grip device with 18 different frictional surfaces under three conditions: with bare hands or with a thin layer of plastic (Tegaderm) or an additional layer of foam affixed to the fingertips. The coefficient of friction at the finger-object interface of each surface was obtained for each subject with bare hands and Tegaderm by measuring the slip ratio (grip force/load force) at the moment of slip. We found that the foam layer reduced sensibility for two-point discrimination and pressure sensitivity at the fingertips, but Tegaderm did not. However, Tegaderm reduced static, but not dynamic, tactile discrimination. Adaptation of fingertip grip forces to surface friction measured by the rate of change of peak grip force, and grip force efficiency measured by the grip-load force ratio at lift, showed a proportional relationship with bare hands but were impaired with Tegaderm and foam. Activation of muscles engaged in precision grip also varied with the frictional surface with bare hands but not with Tegaderm and foam. The results suggest that sensitivity for static tactile discrimination is necessary for feedforward and feedback control of grip forces and for adaptive modulation of muscle activity during precision grasp. PMID:26655820

  6. Perspective on rainbow-ladder truncation

    NASA Astrophysics Data System (ADS)

    Eichmann, G.; Alkofer, R.; Cloët, I. C.; Krassnigg, A.; Roberts, C. D.

    2008-04-01

    Prima facie the systematic implementation of corrections to the rainbow-ladder truncation of QCD's Dyson-Schwinger equations will uniformly reduce in magnitude those calculated mass-dimensioned results for pseudoscalar and vector meson properties that are not tightly constrained by symmetries. The aim and interpretation of studies employing rainbow-ladder truncation are reconsidered in this light.

  7. Perspective on rainbow-ladder truncation

    SciTech Connect

    Eichmann, G.; Alkofer, R.; Krassnigg, A.; Cloeet, I. C.; Roberts, C. D.

    2008-04-15

    Prima facie the systematic implementation of corrections to the rainbow-ladder truncation of QCD's Dyson-Schwinger equations will uniformly reduce in magnitude those calculated mass-dimensioned results for pseudoscalar and vector meson properties that are not tightly constrained by symmetries. The aim and interpretation of studies employing rainbow-ladder truncation are reconsidered in this light.

  8. Cholesterol-modulating agents kill acute myeloid leukemia cells and sensitize them to therapeutics by blocking adaptive cholesterol responses.

    PubMed

    Li, Henry Y; Appelbaum, Frederick R; Willman, Cheryl L; Zager, Richard A; Banker, Deborah E

    2003-05-01

    The mevalonate pathway produces many critical substances in cells, including sterols essential for membrane structure and isoprenoids vital to the function of many membrane proteins. 3-Hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) reductase is a rate-limiting enzyme in the mevalonate pathway. Because cholesterol is a product of this pathway, HMG-CoA reductase inhibitors (statins) are used to treat hypercholesterolemia. Statins are also toxic to several malignancies, including acute myeloid leukemia (AML). Although this toxicity has been attributed to the inhibition of Ras/Rho isoprenylation, we have previously shown that statin toxicity in primary AML cells (AMLs) does not correlate with Ras isoprenylation or with activating Ras mutations. In other studies, we have shown that hypoxic and oxidant injuries induce cholesterol increments in renal tubule cells and that statins sensitize these cells to injury by blocking protective cholesterol responses. We now demonstrate that exposing particular AMLs to radiochemotherapy induces much greater cellular cholesterol increments than those seen in similarly treated normal bone marrow. Treatment of these AMLs with mevastatin or zaragozic acid (which inhibits cholesterol synthesis but not isoprenoid synthesis) attenuates the cholesterol increments and sensitizes cells to radiochemotherapy. The extent of toxicity is affected by the availability of extracellular lipoproteins, further suggesting that cellular cholesterol is critical to cell survival in particular AMLs. Because zaragozic acid does not inhibit isoprenoid synthesis, these data suggest that cholesterol modulation is an important mechanism whereby statins exert toxic effects on some AMLs and that cholesterol modulators may improve therapeutic ratios in AML by impacting cholesterol-dependent cytoresistance. PMID:12506040

  9. Heart Block

    MedlinePlus

    ... Block Explore Heart Block What Is... Electrical System & EKG Results Types Causes Who Is at Risk Signs & ... heart block. Doctors use a test called an EKG (electrocardiogram) to help diagnose heart block. This test ...

  10. Evolutionary and Functional Relationships in the Truncated Hemoglobin Family

    PubMed Central

    Bustamante, Juan P.; Radusky, Leandro; Boechi, Leonardo; Estrin, Darío A.; ten Have, Arjen; Martí, Marcelo A.

    2016-01-01

    Predicting function from sequence is an important goal in current biological research, and although, broad functional assignment is possible when a protein is assigned to a family, predicting functional specificity with accuracy is not straightforward. If function is provided by key structural properties and the relevant properties can be computed using the sequence as the starting point, it should in principle be possible to predict function in detail. The truncated hemoglobin family presents an interesting benchmark study due to their ubiquity, sequence diversity in the context of a conserved fold and the number of characterized members. Their functions are tightly related to O2 affinity and reactivity, as determined by the association and dissociation rate constants, both of which can be predicted and analyzed using in-silico based tools. In the present work we have applied a strategy, which combines homology modeling with molecular based energy calculations, to predict and analyze function of all known truncated hemoglobins in an evolutionary context. Our results show that truncated hemoglobins present conserved family features, but that its structure is flexible enough to allow the switch from high to low affinity in a few evolutionary steps. Most proteins display moderate to high oxygen affinities and multiple ligand migration paths, which, besides some minor trends, show heterogeneous distributions throughout the phylogenetic tree, again suggesting fast functional adaptation. Our data not only deepens our comprehension of the structural basis governing ligand affinity, but they also highlight some interesting functional evolutionary trends. PMID:26788940

  11. Evolutionary and Functional Relationships in the Truncated Hemoglobin Family.

    PubMed

    Bustamante, Juan P; Radusky, Leandro; Boechi, Leonardo; Estrin, Darío A; Ten Have, Arjen; Martí, Marcelo A

    2016-01-01

    Predicting function from sequence is an important goal in current biological research, and although, broad functional assignment is possible when a protein is assigned to a family, predicting functional specificity with accuracy is not straightforward. If function is provided by key structural properties and the relevant properties can be computed using the sequence as the starting point, it should in principle be possible to predict function in detail. The truncated hemoglobin family presents an interesting benchmark study due to their ubiquity, sequence diversity in the context of a conserved fold and the number of characterized members. Their functions are tightly related to O2 affinity and reactivity, as determined by the association and dissociation rate constants, both of which can be predicted and analyzed using in-silico based tools. In the present work we have applied a strategy, which combines homology modeling with molecular based energy calculations, to predict and analyze function of all known truncated hemoglobins in an evolutionary context. Our results show that truncated hemoglobins present conserved family features, but that its structure is flexible enough to allow the switch from high to low affinity in a few evolutionary steps. Most proteins display moderate to high oxygen affinities and multiple ligand migration paths, which, besides some minor trends, show heterogeneous distributions throughout the phylogenetic tree, again suggesting fast functional adaptation. Our data not only deepens our comprehension of the structural basis governing ligand affinity, but they also highlight some interesting functional evolutionary trends. PMID:26788940

  12. Truncated Moment Analysis of Nucleon Structure Functions

    SciTech Connect

    A. Psaker; W. Melnitchouk; M. E. Christy; C. E. Keppel

    2007-11-16

    We employ a novel new approach using "truncated" moments, or integrals of structure functions over restricted regions of x, to study local quark-hadron duality, and the degree to which individual resonance regions are dominated by leading twists. Because truncated moments obey the same Q^2 evolution equations as the leading twist parton distributions, this approach makes possible for the first time a description of resonance region data and the phenomenon of quark-hadron duality directly from QCD.

  13. Multifluid Block-Adaptive-Tree Solar Wind Roe-Type Upwind Scheme: Magnetospheric Composition and Dynamics During Geomagnetic Storms-Initial Results

    NASA Technical Reports Server (NTRS)

    Glocer, A.; Toth, G.; Ma, Y.; Gombosi, T.; Zhang, J.-C.; Kistler, L. M.

    2009-01-01

    The magnetosphere contains a significant amount of ionospheric O+, particularly during geomagnetically active times. The presence of ionospheric plasma in the magnetosphere has a notable impact on magnetospheric composition and processes. We present a new multifluid MHD version of the Block-Adaptive-Tree Solar wind Roe-type Upwind Scheme model of the magnetosphere to track the fate and consequences of ionospheric outflow. The multifluid MHD equations are presented as are the novel techniques for overcoming the formidable challenges associated with solving them. Our new model is then applied to the May 4, 1998 and March 31, 2001 geomagnetic storms. The results are juxtaposed with traditional single-fluid MHD and multispecies MHD simulations from a previous study, thereby allowing us to assess the benefits of using a more complex model with additional physics. We find that our multifluid MHD model (with outflow) gives comparable results to the multispecies MHD model (with outflow), including a more strongly negative Dst, reduced CPCP, and a drastically improved magnetic field at geosynchronous orbit, as compared to single-fluid MHD with no outflow. Significant differences in composition and magnetic field are found between the multispecies and multifluid approach further away from the Earth. We further demonstrate the ability to explore pressure and bulk velocity differences between H+ and O+, which is not possible when utilizing the other techniques considered

  14. From linking of metal-oxide building blocks in a dynamic library to giant clusters with unique properties and towards adaptive chemistry.

    PubMed

    Müller, Achim; Gouzerh, Pierre

    2012-11-21

    Following Nature's lessons, today chemists can cross the boundary of the small molecule world to construct multifunctional and highly complex molecular nano-objects up to protein size and even cell-like nanosystems showing responsive sensing. Impressive examples emerge from studies of the solutions of some oxoanions of the early transition metals especially under reducing conditions which enable the controlled linking of metal-oxide building blocks. The latter are available from constitutional dynamic libraries, thus providing the option to generate multifunctional unique nanoscale molecular systems with exquisite architectures, which even opens the way towards adaptive and evolutive (Darwinian) chemistry. The present review presents the first comprehensive report of current knowledge (including synthesis aspects not discussed before) regarding the related giant metal-oxide clusters mainly of the type {Mo(57)M'(6)} (M' = Fe(III), V(IV)) (torus structure), {M(72)M'(30)} (M = Mo, M' = V(IV), Cr(III), Fe(III), Mo(V)), {M(72)Mo(60)} (M = Mo, W) (Keplerates), {Mo(154)}, {Mo(176)}, {Mo(248)} ("big wheels"), and {Mo(368)} ("blue lemon") - all having the important transferable pentagonal {(M)M(5)} groups in common. These discoveries expanded the frontiers of inorganic chemistry to the mesoscopic world, while there is probably no collection of discrete inorganic compounds which offers such a versatile chemistry and the option to study new phenomena of interdisciplinary interest. The variety of different properties of the sphere- and wheel-type metal-oxide-based clusters can directly be related to their unique architectures: The spherical Keplerate-type capsules having 20 crown-ether-type pores and tunable internal functionalities allow the investigation of confined matter as well as that of sphere-surface-supramolecular and encapsulation chemistry - including related new aspects of the biologically important hydrophobic effects - but also of nanoscale ion transport and

  15. Testing block subdivision algorithms on block designs

    NASA Astrophysics Data System (ADS)

    Wiseman, Natalie; Patterson, Zachary

    2016-01-01

    Integrated land use-transportation models predict future transportation demand taking into account how households and firms arrange themselves partly as a function of the transportation system. Recent integrated models require parcels as inputs and produce household and employment predictions at the parcel scale. Block subdivision algorithms automatically generate parcel patterns within blocks. Evaluating block subdivision algorithms is done by way of generating parcels and comparing them to those in a parcel database. Three block subdivision algorithms are evaluated on how closely they reproduce parcels of different block types found in a parcel database from Montreal, Canada. While the authors who developed each of the algorithms have evaluated them, they have used their own metrics and block types to evaluate their own algorithms. This makes it difficult to compare their strengths and weaknesses. The contribution of this paper is in resolving this difficulty with the aim of finding a better algorithm suited to subdividing each block type. The proposed hypothesis is that given the different approaches that block subdivision algorithms take, it's likely that different algorithms are better adapted to subdividing different block types. To test this, a standardized block type classification is used that consists of mutually exclusive and comprehensive categories. A statistical method is used for finding a better algorithm and the probability it will perform well for a given block type. Results suggest the oriented bounding box algorithm performs better for warped non-uniform sites, as well as gridiron and fragmented uniform sites. It also produces more similar parcel areas and widths. The Generalized Parcel Divider 1 algorithm performs better for gridiron non-uniform sites. The Straight Skeleton algorithm performs better for loop and lollipop networks as well as fragmented non-uniform and warped uniform sites. It also produces more similar parcel shapes and patterns.

  16. Dualising consistent IIA/IIB truncations

    NASA Astrophysics Data System (ADS)

    Malek, Emanuel; Samtleben, Henning

    2015-12-01

    We use exceptional field theory to establish a duality between certain consistent 7-dimensional truncations with maximal SUSY from IIA to IIB. We use this technique to obtain new consistent truncations of IIB on S 3 and H p,q and work out the explicit reduction formulas in the internal sector. We also present uplifts for other gaugings of 7-d maximal SUGRA, including theories with a trombone gauging. Some of the latter can only be obtained by a non-geometric compactification.

  17. Association between Interferon Response and Protective Efficacy of NS1-Truncated Mutants as Influenza Vaccine Candidates in Chickens.

    PubMed

    Jang, Hyesun; Ngunjiri, John M; Lee, Chang-Won

    2016-01-01

    Influenza virus mutants that encode C-terminally truncated NS1 proteins (NS1-truncated mutants) are attractive candidates for avian live attenuated influenza vaccine (LAIV) development because they are both attenuated and immunogenic in chickens. We previously showed that a high protective efficacy of NS1-truncated LAIV in chickens corresponds with induction of high levels of type I interferon (IFN) responses in chicken embryonic fibroblast cells. In this study, we investigated the relationship between induction of IFN and IFN-stimulated gene responses in vivo and the immunogenicity and protective efficacy of NS1-truncated LAIV. Our data demonstrates that accelerated antibody induction and protective efficacy of NS1-truncated LAIV correlates well with upregulation of IFN-stimulated genes. Further, through oral administration of recombinant chicken IFN alpha in drinking water, we provide direct evidence that type I IFN can promote rapid induction of adaptive immune responses and protective efficacy of influenza vaccine in chickens. PMID:27257989

  18. Association between Interferon Response and Protective Efficacy of NS1-Truncated Mutants as Influenza Vaccine Candidates in Chickens

    PubMed Central

    Jang, Hyesun; Ngunjiri, John M.; Lee, Chang-Won

    2016-01-01

    Influenza virus mutants that encode C-terminally truncated NS1 proteins (NS1-truncated mutants) are attractive candidates for avian live attenuated influenza vaccine (LAIV) development because they are both attenuated and immunogenic in chickens. We previously showed that a high protective efficacy of NS1-truncated LAIV in chickens corresponds with induction of high levels of type I interferon (IFN) responses in chicken embryonic fibroblast cells. In this study, we investigated the relationship between induction of IFN and IFN-stimulated gene responses in vivo and the immunogenicity and protective efficacy of NS1-truncated LAIV. Our data demonstrates that accelerated antibody induction and protective efficacy of NS1-truncated LAIV correlates well with upregulation of IFN-stimulated genes. Further, through oral administration of recombinant chicken IFN alpha in drinking water, we provide direct evidence that type I IFN can promote rapid induction of adaptive immune responses and protective efficacy of influenza vaccine in chickens. PMID:27257989

  19. Canine MPV17 truncation without clinical manifestations

    PubMed Central

    Hänninen, Reetta L.; Ahonen, Saija; Màrquez, Merce; Myöhänen, Maarit J.; Hytönen, Marjo K.; Lohi, Hannes

    2015-01-01

    ABSTRACT Mitochondrial DNA depletion syndromes (MDS) are often serious autosomal recessively inherited disorders characterized by tissue-specific mtDNA copy number reduction. Many genes, including MPV17, are associated with the hepatocerebral form of MDS. MPV17 encodes for a mitochondrial inner membrane protein with a poorly characterized function. Several MPV17 mutations have been reported in association with a heterogeneous group of early-onset manifestations, including liver disease and neurological problems. Mpv17-deficient mice present renal and hearing defects. We describe here a MPV17 truncation mutation in dogs. We found a 1-bp insertion in exon 4 of the MPV17 gene, resulting in a frameshift and early truncation of the encoded protein. The mutation halves MPV17 expression in the lymphocytes of the homozygous dogs and the truncated protein is not translated in transfected cells. The insertion mutation is recurrent and exists in many unrelated breeds, although is highly enriched in the Boxer breed. Unexpectedly, despite the truncation of MPV17, we could not find any common phenotypes in the genetically affected dogs. The lack of observable phenotype could be due to a late onset, mild symptoms or potential tissue-specific compensatory mechanisms. This study suggests species-specific differences in the manifestation of the MPV17 defects and establishes a novel large animal model to further study MPV17 function and role in mitochondrial biology. PMID:26353863

  20. Family Therapy for the "Truncated" Nuclear Family.

    ERIC Educational Resources Information Center

    Zuk, Gerald H.

    1980-01-01

    The truncated nuclear family consists of a two-generation group in which conflict has produced a polarization of values. The single-parent family is at special risk. Go-between process enables the therapist to depolarize sharply conflicted values and reduce pathogenic relating. (Author)

  1. Irregularly Shaped Space-Filling Truncated Octahedra

    ERIC Educational Resources Information Center

    Hanson, John Robert

    2008-01-01

    For any parent tetrahedron ABCD, centroids of selected sub-tetrahedra form the vertices of an irregularly shaped space-filling truncated octahedron. To reflect these properties, such a figure will be called an ISTO. Each edge of the ISTO is parallel to and one-eighth the length of one of the edges of tetrahedron ABCD and the volume of the ISTO is…

  2. Fast and accurate matrix completion via truncated nuclear norm regularization.

    PubMed

    Hu, Yao; Zhang, Debing; Ye, Jieping; Li, Xuelong; He, Xiaofei

    2013-09-01

    Recovering a large matrix from a small subset of its entries is a challenging problem arising in many real applications, such as image inpainting and recommender systems. Many existing approaches formulate this problem as a general low-rank matrix approximation problem. Since the rank operator is nonconvex and discontinuous, most of the recent theoretical studies use the nuclear norm as a convex relaxation. One major limitation of the existing approaches based on nuclear norm minimization is that all the singular values are simultaneously minimized, and thus the rank may not be well approximated in practice. In this paper, we propose to achieve a better approximation to the rank of matrix by truncated nuclear norm, which is given by the nuclear norm subtracted by the sum of the largest few singular values. In addition, we develop a novel matrix completion algorithm by minimizing the Truncated Nuclear Norm. We further develop three efficient iterative procedures, TNNR-ADMM, TNNR-APGL, and TNNR-ADMMAP, to solve the optimization problem. TNNR-ADMM utilizes the alternating direction method of multipliers (ADMM), while TNNR-AGPL applies the accelerated proximal gradient line search method (APGL) for the final optimization. For TNNR-ADMMAP, we make use of an adaptive penalty according to a novel update rule for ADMM to achieve a faster convergence rate. Our empirical study shows encouraging results of the proposed algorithms in comparison to the state-of-the-art matrix completion algorithms on both synthetic and real visual datasets. PMID:23868774

  3. Phase diagram of a truncated tetrahedral model.

    PubMed

    Krcmar, Roman; Gendiar, Andrej; Nishino, Tomotoshi

    2016-08-01

    Phase diagram of a discrete counterpart of the classical Heisenberg model, the truncated tetrahedral model, is analyzed on the square lattice, when the interaction is ferromagnetic. Each spin is represented by a unit vector that can point to one of the 12 vertices of the truncated tetrahedron, which is a continuous interpolation between the tetrahedron and the octahedron. Phase diagram of the model is determined by means of the statistical analog of the entanglement entropy, which is numerically calculated by the corner transfer matrix renormalization group method. The obtained phase diagram consists of four different phases, which are separated by five transition lines. In the parameter region, where the octahedral anisotropy is dominant, a weak first-order phase transition is observed. PMID:27627273

  4. Truncated Dual-Cap Nucleation Site Development

    NASA Technical Reports Server (NTRS)

    Matson, Douglas M.; Sander, Paul J.

    2012-01-01

    During heterogeneous nucleation within a metastable mushy-zone, several geometries for nucleation site development must be considered. Traditional spherical dual cap and crevice models are compared to a truncated dual cap to determine the activation energy and critical cluster growth kinetics in ternary Fe-Cr-Ni steel alloys. Results of activation energy results indicate that nucleation is more probable at grain boundaries within the solid than at the solid-liquid interface.

  5. Unquenched Studies Using the Truncated Determinant Algorithm

    SciTech Connect

    A. Duncan, E. Eichten and H. Thacker

    2001-11-29

    A truncated determinant algorithm is used to study the physical effects of the quark eigenmodes associated with eigenvalues below 420 MeV. This initial high statistics study focuses on coarse (6{sup 4}) lattices (with O(a{sup 2}) improved gauge action), light internal quark masses and large physical volumes. Three features of full QCD are examined: topological charge distributions, string breaking as observed in the static energy and the eta prime mass.

  6. Accurate basis set truncation for wavefunction embedding

    NASA Astrophysics Data System (ADS)

    Barnes, Taylor A.; Goodpaster, Jason D.; Manby, Frederick R.; Miller, Thomas F.

    2013-07-01

    Density functional theory (DFT) provides a formally exact framework for performing embedded subsystem electronic structure calculations, including DFT-in-DFT and wavefunction theory-in-DFT descriptions. In the interest of efficiency, it is desirable to truncate the atomic orbital basis set in which the subsystem calculation is performed, thus avoiding high-order scaling with respect to the size of the MO virtual space. In this study, we extend a recently introduced projection-based embedding method [F. R. Manby, M. Stella, J. D. Goodpaster, and T. F. Miller III, J. Chem. Theory Comput. 8, 2564 (2012)], 10.1021/ct300544e to allow for the systematic and accurate truncation of the embedded subsystem basis set. The approach is applied to both covalently and non-covalently bound test cases, including water clusters and polypeptide chains, and it is demonstrated that errors associated with basis set truncation are controllable to well within chemical accuracy. Furthermore, we show that this approach allows for switching between accurate projection-based embedding and DFT embedding with approximate kinetic energy (KE) functionals; in this sense, the approach provides a means of systematically improving upon the use of approximate KE functionals in DFT embedding.

  7. Population Blocks.

    ERIC Educational Resources Information Center

    Smith, Martin H.

    1992-01-01

    Describes an educational game called "Population Blocks" that is designed to illustrate the concept of exponential growth of the human population and some potential effects of overpopulation. The game material consists of wooden blocks; 18 blocks are painted green (representing land), 7 are painted blue (representing water); and the remaining…

  8. Turbulence excited frequency domain damping measurement and truncation effects

    NASA Technical Reports Server (NTRS)

    Soovere, J.

    1976-01-01

    Existing frequency domain modal frequency and damping analysis methods are discussed. The effects of truncation in the Laplace and Fourier transform data analysis methods are described. Methods for eliminating truncation errors from measured damping are presented. Implications of truncation effects in fast Fourier transform analysis are discussed. Limited comparison with test data is presented.

  9. Performance of an artificial absorber for truncating FEM meshes

    NASA Astrophysics Data System (ADS)

    Gong, Jian; Volakis, John L.

    1995-01-01

    We investigate the effectiveness of an artificial absorber for truncating finite element (FE) meshes. Specifically, we present the implementation of a novel mesh truncation approach using a perfectly matched anisotropic absorber for waveguides and stripline circuits. This truncation scheme is useful in many applications, including antennas, scattering, and microwave circuits.

  10. Tailored Assemblies of Rod-Coil Poly(3-hexylthiophene)-b-Polystyrene Diblock Copolymers: Adaptable Building Blocks for High-Performance Organic Field-Effect Transistors

    SciTech Connect

    Xiao, Kai; Yu, Xiang; Chen, Jihua; Lavrik, Nickolay V; Hong, Kunlun; Sumpter, Bobby; Geohegan, David B

    2011-01-01

    The self-assembly process and resulting structure of a series of conductive diblock copolymer thin films of Poly(3-hexylthiophene)-b-Polystyrene (P3HT-b-PS) have been studied by TEM, SAED, GIXD and AFM and additionally by first principles modeling and simulation. By varying the molecular weight of the P3HT segment, these block copolymers undergo microphase separation and self-assemble into nanostructured sphere, lamellae, nanofiber, and nanoribbon in the films. Within the diblock copolymer thin film, the convalently bonded PS blocks segregated to form amorphous domains, however, the conductive P3HT blocks were crystalline, exhibiting highly-ordered molecular packing with their alkyl side chains aligned along to the normal to the substrate and the - stacking direction of the thiophene rings aligned parallel to the substrate. The conductive P3HY block copolymers exhibited significant improvements in organic feild-effect transistor (OFET) performance and environmental stability as compared to P3HT homopolymers, with up to a factor of two increase in measured moblity (0.08 cm2/Vs ) for the P4 (85 wt% P3HT). Overall, this work demonstrates that the high degree of molecular order induced by bock copolymer phase separation can improve the transport properties and stability of conductive polymer critical for high-performance OFET s.

  11. Tibial hemimelia associated with GLI3 truncation.

    PubMed

    Deimling, Steven; Sotiropoulos, Chris; Lau, Kimberly; Chaudhry, Sonia; Sturgeon, Kendra; Kelley, Simon; Narayanan, Unni; Howard, Andrew; Hui, Chi-Chung; Hopyan, Sevan

    2016-05-01

    Tibial hemimelia is a rare, debilitating and often sporadic congenital deficiency. In syndromic cases, mutations of a Sonic hedgehog (SHH) enhancer have been identified. Here we describe an ~5 kb deletion within the SHH repressor GLI3 in two patients with bilateral tibial hemimelia. This deletion results in a truncated GLI3 protein that lacks a DNA-binding domain and cannot repress hedgehog signaling. These findings strengthen the concept that tibial hemimelia arises because of failure to restrict SHH activity to the posterior aspect of the limb bud. PMID:26791356

  12. Ionic Blocks

    ERIC Educational Resources Information Center

    Sevcik, Richard S.; Gamble, Rex; Martinez, Elizabet; Schultz, Linda D.; Alexander, Susan V.

    2008-01-01

    "Ionic Blocks" is a teaching tool designed to help middle school students visualize the concepts of ions, ionic compounds, and stoichiometry. It can also assist high school students in reviewing their subject mastery. Three dimensional blocks are used to represent cations and anions, with color indicating charge (positive or negative) and size…

  13. Vortex breakdown in a truncated conical bioreactor

    NASA Astrophysics Data System (ADS)

    Balci, Adnan; Brøns, Morten; Herrada, Miguel A.; Shtern, Vladimir N.

    2015-12-01

    This numerical study explains the eddy formation and disappearance in a slow steady axisymmetric air-water flow in a vertical truncated conical container, driven by the rotating top disk. Numerous topological metamorphoses occur as the water height, Hw, and the bottom-sidewall angle, α, vary. It is found that the sidewall convergence (divergence) from the top to the bottom stimulates (suppresses) the development of vortex breakdown (VB) in both water and air. At α = 60°, the flow topology changes eighteen times as Hw varies. The changes are due to (a) competing effects of AMF (the air meridional flow) and swirl, which drive meridional motions of opposite directions in water, and (b) feedback of water flow on AMF. For small Hw, the AMF effect dominates. As Hw increases, the swirl effect dominates and causes VB. The water flow feedback produces and modifies air eddies. The results are of fundamental interest and can be relevant for aerial bioreactors.

  14. Entanglement entropy from the truncated conformal space

    NASA Astrophysics Data System (ADS)

    Palmai, T.

    2016-08-01

    A new numerical approach to entanglement entropies of the Rényi type is proposed for one-dimensional quantum field theories. The method extends the truncated conformal spectrum approach and we will demonstrate that it is especially suited to study the crossover from massless to massive behavior when the subsystem size is comparable to the correlation length. We apply it to different deformations of massless free fermions, corresponding to the scaling limit of the Ising model in transverse and longitudinal fields. For massive free fermions the exactly known crossover function is reproduced already in very small system sizes. The new method treats ground states and excited states on the same footing, and the applicability for excited states is illustrated by reproducing Rényi entropies of low-lying states in the transverse field Ising model.

  15. Mycobacterial truncated hemoglobins: from genes to functions.

    PubMed

    Ascenzi, Paolo; Bolognesi, Martino; Milani, Mario; Guertin, Michel; Visca, Paolo

    2007-08-15

    Infections caused by bacteria belonging to genus Mycobacterium are among the most challenging threats for human health. The ability of mycobacteria to persist in vivo in the presence of reactive nitrogen and oxygen species implies the presence in these bacteria of effective detoxification mechanisms. Mycobacterial truncated hemoglobins (trHbs) have recently been implicated in scavenging of reactive nitrogen species. Individual members from each trHb family (N, O, and P) can be present in the same mycobacterial species. The distinct features of the heme active site structure combined with different ligand binding properties and in vivo expression patterns of mycobacterial trHbs suggest that these globins may accomplish diverse functions. Here, recent genomic, structural and biochemical information on mycobacterial trHbs is reviewed, with the aim of providing further insights into the role of these globins in mycobacterial physiology. PMID:17532149

  16. Facile realization of efficient blocking from ZnO/TiO2 mismatch interface in dye-sensitized solar cells and precise microscopic modeling adapted by circuit analysis

    NASA Astrophysics Data System (ADS)

    Ameri, Mohsen; Samavat, Feridoun; Mohajerani, Ezeddin; Fathollahi, Mohammad-Reza

    2016-06-01

    In the present research, the effect of \\text{ZnO} -based blocking layers on the operational features of \\text{Ti}{{\\text{O}}2} -based dye-sensitized solar cells is investigated. A facile solution-based coating method is applied to prepare an interfacial highly transparent \\text{ZnO} compact blocking layer (CBL) to enhance the efficiency of dye-sensitized solar cells. Different precursor molar concentration were tested to find the optimum concentration. Optical and electrical measurements were carried out to confirm the operation of the CBLs. Morphological characterizations were performed by scanning electron microscopy (SEM) and atomic force microscopy (AFM) to investigate the structure of the compact layers. We have also developed a set of modeling procedures to extract the effective electrical parameters including the parasitic resistances and charged carrier profiles to investigate the effect of CBLs on the dye-sensitized solar cell (DSSC) performance. The adopted modeling approach should establish a versatile framework for diagnosis of DSSCs and facilitates the exploration of critical factors influencing device performance.

  17. A method for Hamiltonian truncation: a four-wave example

    NASA Astrophysics Data System (ADS)

    Viscondi, Thiago F.; Caldas, Iberê L.; Morrison, Philip J.

    2016-04-01

    A method for extracting finite-dimensional Hamiltonian systems from a class of 2 + 1 Hamiltonian mean field theories is presented. These theories possess noncanonical Poisson brackets, which normally resist Hamiltonian truncation, but a process of beatification by coordinate transformation near a reference state is described in order to perturbatively overcome this difficulty. Two examples of four-wave truncation of Euler’s equation for scalar vortex dynamics are given and compared: one a direct non-Hamiltonian truncation of the equations of motion, the other obtained by beatifying the Poisson bracket and then truncating.

  18. Design, Construction and Cloning of Truncated ORF2 and tPAsp-PADRE-Truncated ORF2 Gene Cassette From Hepatitis E Virus in the pVAX1 Expression Vector

    PubMed Central

    Farshadpour, Fatemeh; Makvandi, Manoochehr; Taherkhani, Reza

    2015-01-01

    Background: Hepatitis E Virus (HEV) is the causative agent of enterically transmitted acute hepatitis and has high mortality rate of up to 30% among pregnant women. Therefore, development of a novel vaccine is a desirable goal. Objectives: The aim of this study was to construct tPAsp-PADRE-truncated open reading frame 2 (ORF2) and truncated ORF2 DNA plasmid, which can assist future studies with the preparation of an effective vaccine against Hepatitis E Virus. Materials and Methods: A synthetic codon-optimized gene cassette encoding tPAsp-PADRE-truncated ORF2 protein was designed, constructed and analyzed by some bioinformatics software. Furthermore, a codon-optimized truncated ORF2 gene was amplified by the polymerase chain reaction (PCR), with a specific primer from the previous construct. The constructs were sub-cloned in the pVAX1 expression vector and finally expressed in eukaryotic cells. Results: Sequence analysis and bioinformatics studies of the codon-optimized gene cassette revealed that codon adaptation index (CAI), GC content, and frequency of optimal codon usage (Fop) value were improved, and performance of the secretory signal was confirmed. Cloning and sub-cloning of the tPAsp-PADRE-truncated ORF2 gene cassette and truncated ORF2 gene were confirmed by colony PCR, restriction enzymes digestion and DNA sequencing of the recombinant plasmids pVAX-tPAsp-PADRE-truncated ORF2 (aa 112-660) and pVAX-truncated ORF2 (aa 112-660). The expression of truncated ORF2 protein in eukaryotic cells was approved by an Immunofluorescence assay (IFA) and the reverse transcriptase polymerase chain reaction (RT-PCR) method. Conclusions: The results of this study demonstrated that the tPAsp-PADRE-truncated ORF2 gene cassette and the truncated ORF2 gene in recombinant plasmids are successfully expressed in eukaryotic cells. The immunogenicity of the two recombinant plasmids with different formulations will be evaluated as a novel DNA vaccine in future investigations. PMID

  19. Minimizing the angular divergence of high-order harmonics by truncating the truncated Bessel beam

    NASA Astrophysics Data System (ADS)

    Ye, Peng; Teng, Hao; He, Xin-Kui; Zhong, Shi-Yang; Wang, Li-Feng; Zhan, Min-Jie; Zhang, Wei; Yun, Chen-Xia; Wei, Zhi-Yi

    2014-12-01

    We have experimentally investigated high-order-harmonic generation driven by a few-cycle truncated Bessel (TB) laser beam which propagates through optical elements of finite aperture sizes. The TB beam was first investigated by Nisoli et al. [Phys. Rev. Lett. 88, 033902 (2002), 10.1103/PhysRevLett.88.033902], who assumed an infinite size for the optical elements so they concluded that the phase and intensity of the laser field oscillate dramatically around the laser focus in space. However, in all real experiments, the optical elements are always finite in size and would further truncate the TB beam, and so the oscillations would dwindle substantially. In this paper we take the finite size of the optical elements into account. We find that the further truncated TB beam has two intensity peaks around the focus. In front of the second peak position the curvatures of the laser phase front and the atomic-dipole phase front have the same absolute values but opposite signs, so the generated harmonic has a flat wavefront and hence a minimized angular divergence. In addition, at this position the pump intensity is not much less than its maximal value. This result is of significant importance in practical applications due to the finite aperture size of all real optical elements.

  20. Stringy Schrödinger truncations

    NASA Astrophysics Data System (ADS)

    Detournay, Stéphane; Guica, Monica

    2013-08-01

    Motivated by the desire to better understand finite-temperature holography for three-dimensional Schrödinger spacetimes, we: i) construct a four-parameter family of warped black string solutions of type IIB supergravity and ii) find the first consistent truncations of type IIB string theory to three dimensions that admit both supersymmetric Schrödinger solutions and warped generalizations of the BTZ black hole. Our analysis reveals a number of interesting features. One is that the thermodynamic properties of all the warped black strings, as well as the asymptotic symmetry group data, are identical to those of BTZ, in an appropriate parametrization. A more striking feature is that the spectrum of linearized perturbations around the various supersymmetric Schrödinger vacua oftentimes contains modes that carry energy flux through the spacetime boundary, which are usually believed to be unstable. A preliminary analysis indicates that, at least in the case of most interest, these modes do not lead to an instability.

  1. BCFT moduli space in level truncation

    NASA Astrophysics Data System (ADS)

    Kudrna, Matěj; Maccaferri, Carlo

    2016-04-01

    We propose a new non-perturbative method to search for marginal deformations in level truncated open string field theory. Instead of studying the flatness of the effective potential for the marginal field (which is not expected to give a one-to-one parametrization of the BCFT moduli space), we identify a new non-universal branch of the tachyon potential which, from known analytic examples, is expected to parametrize the marginal flow in a much larger region of the BCFT moduli space. By a level 18 computation in Siegel gauge we find an increasingly flat effective potential in the non-universal sector, connected to the perturbative vacuum and we confirm that the coefficient of the marginal field ( λ SFT) has a maximum compatible with the value where the solutions stop existing in the standard Sen-Zwiebach approach. At the maximal reachable level the effective potential still deviates from flatness for large values of the tachyon, but the Ellwood invariants stay close to the correct BCFT values on the whole branch and the full periodic moduli space of the cosine deformation is covered.

  2. Efficient Generation of Truncated Bessel Beams using Cylindrical Waveguides

    NASA Technical Reports Server (NTRS)

    Ilchenko, Vladimir S.; Mohageg, Makan; Savchenkov, Anatoliy A.; Matsko, Andrey B.; Maleki, Lute

    2007-01-01

    In this paper we address efficient conversion between a Gaussian beam (a truncated plane wave) and a truncated Bessel beam of agiven order, using cylindrical optical waveguides and whispering gallery mode resonators. Utilizing a generator based on waveguides combined with whispering gallery mode resonators, we have realized Bessel beams of the order of 200 with a conversion efficiency exceeding 10 %.

  3. A truncated, activin-induced Smad3 isoform acts as a transcriptional repressor of FSHβ expression in mouse pituitary.

    PubMed

    Kim, So-Youn; Zhu, Jie; Woodruff, Teresa K

    2011-08-01

    The receptor-regulated protein Smad3 is key player in the signaling cascade stimulated by the binding of activin to its cell surface receptor. Upon phosphorylation, Smad3 forms a heterocomplex with Smad2 and Smad4, translocates to the nucleus and acts as a transcriptional co-activator. We have identified a unique isoform of Smad3 that is expressed in mature pituitary gonadotropes. 5' RACE revealed that this truncated Smad3 isoform is transcribed from an ATG site within exon 4 and consists of 7 exons encoding half of the linker region and the MH2 region. In pituitary cells, the truncated Smad3 isoform was phosphorylated upon activin treatment, in a manner that was temporally distinct from the phosphorylation of full-length Smad3. Activin-induced phosphorylation of Smad3 and the truncated Smad3 isoform was blocked by both follistatin and siRNA-mediated knockdown of Smad3. The truncated Smad3 isoform antagonized Smad3-mediated, activin-responsive promoter activity. We propose that the pituitary gonadotrope contains an ultra-short, activin-responsive feedback loop utilizing two different isoforms of Smad3, one which acts as an agonist (Smad3) and another that acts as an intracrine antagonist (truncated Smad3 isoform) to regulate FSHβ production. PMID:21664424

  4. A Shifted Block Lanczos Algorithm 1: The Block Recurrence

    NASA Technical Reports Server (NTRS)

    Grimes, Roger G.; Lewis, John G.; Simon, Horst D.

    1990-01-01

    In this paper we describe a block Lanczos algorithm that is used as the key building block of a software package for the extraction of eigenvalues and eigenvectors of large sparse symmetric generalized eigenproblems. The software package comprises: a version of the block Lanczos algorithm specialized for spectrally transformed eigenproblems; an adaptive strategy for choosing shifts, and efficient codes for factoring large sparse symmetric indefinite matrices. This paper describes the algorithmic details of our block Lanczos recurrence. This uses a novel combination of block generalizations of several features that have only been investigated independently in the past. In particular new forms of partial reorthogonalization, selective reorthogonalization and local reorthogonalization are used, as is a new algorithm for obtaining the M-orthogonal factorization of a matrix. The heuristic shifting strategy, the integration with sparse linear equation solvers and numerical experience with the code are described in a companion paper.

  5. Self-equilibrium and stability of regular truncated tetrahedral tensegrity structures

    NASA Astrophysics Data System (ADS)

    Zhang, J. Y.; Ohsaki, M.

    2012-10-01

    This paper presents analytical conditions of self-equilibrium and super-stability for the regular truncated tetrahedral tensegrity structures, nodes of which have one-to-one correspondence to the tetrahedral group. These conditions are presented in terms of force densities, by investigating the block-diagonalized force density matrix. The block-diagonalized force density matrix, with independent sub-matrices lying on its leading diagonal, is derived by making use of the tetrahedral symmetry via group representation theory. The condition for self-equilibrium is found by enforcing the force density matrix to have the necessary number of nullities, which is four for three-dimensional structures. The condition for super-stability is further presented by guaranteeing positive semi-definiteness of the force density matrix.

  6. A Truncated Nef Peptide from SIVcpz Inhibits the Production of HIV-1 Infectious Progeny.

    PubMed

    Sabino Cunha, Marcela; Lima Sampaio, Thatiane; Peterlin, B Matija; Jesus da Costa, Luciana

    2016-01-01

    Nef proteins from all primate Lentiviruses, including the simian immunodeficiency virus of chimpanzees (SIVcpz), increase viral progeny infectivity. However, the function of Nef involved with the increase in viral infectivity is still not completely understood. Nonetheless, until now, studies investigating the functions of Nef from SIVcpz have been conducted in the context of the HIV-1 proviruses. In an attempt to investigate the role played by Nef during the replication cycle of an SIVcpz, a Nef-defective derivative was obtained from the SIVcpzWTGab2 clone by introducing a frame shift mutation at a unique restriction site within the nef sequence. This nef-deleted clone expresses an N-terminal 74-amino acid truncated peptide of Nef and was named SIVcpz-tNef. We found that the SIVcpz-tNef does not behave as a classic nef-deleted HIV-1 or simian immunodeficiency virus of macaques SIVmac. Markedly, SIVcpz-tNef progeny from both Hek-293T and Molt producer cells were completely non-infectious. Moreover, the loss in infectivity of SIVcpz-tNef correlated with the inhibition of Gag and GagPol processing. A marked accumulation of Gag and very low levels of reverse transcriptase were detected in viral lysates. Furthermore, these observations were reproduced once the tNef peptide was expressed in trans both in SIVcpzΔNef and HIV-1WT expressing cells, demonstrating that the truncated peptide is a dominant negative for viral processing and infectivity for both SIVcpz and HIV-1. We demonstrated that the truncated Nef peptide binds to GagPol outside the protease region and by doing so probably blocks processing of both GagPol and Gag precursors at a very early stage. This study demonstrates for the first time that naturally-occurring Nef peptides can potently block lentiviral processing and infectivity. PMID:27399760

  7. Tailor-made dimensions of diblock copolymer truncated micelles on a solid by UV irradiation.

    PubMed

    Liou, Jiun-You; Sun, Ya-Sen

    2015-09-28

    We investigated the structural evolution of truncated micelles in ultrathin films of polystyrene-block-poly(2-vinylpyridine), PS-b-P2VP, of monolayer thickness on bare silicon substrates (SiOx/Si) upon UV irradiation in air- (UVIA) and nitrogen-rich (UVIN) environments. The structural evolution of micelles upon UV irradiation was monitored using GISAXS measurements in situ, while the surface morphology was probed using atomic force microscopy ex situ and the chemical composition using X-ray photoelectron spectroscopy (XPS). This work provides clear evidence for the interpretation of the relationship between the structural evolution and photochemical reactions in PS-b-P2VP truncated micelles upon UVIA and UVIN. Under UVIA treatment, photolysis and cross-linking reactions coexisted within the micelles; photolysis occurred mainly at the top of the micelles, whereas cross-linking occurred preferentially at the bottom. The shape and size of UVIA-treated truncated micelles were controlled predominantly by oxidative photolysis reactions, which depended on the concentration gradient of free radicals and oxygen along the micelle height. Because of an interplay between photolysis and photo-crosslinking, the scattering length densities (SLD) of PS and P2VP remained constant. In contrast, UVIN treatments enhanced the contrast in SLD between the PS shell and the P2VP core as cross-linking dominated over photolysis in the presence of nitrogen. The enhancement of the SLD contrast was due to the various degrees of cross-linking under UVIN for the PS and P2VP blocks. PMID:26251976

  8. A Truncated Nef Peptide from SIVcpz Inhibits the Production of HIV-1 Infectious Progeny

    PubMed Central

    Sabino Cunha, Marcela; Lima Sampaio, Thatiane; Peterlin, B. Matija; Jesus da Costa, Luciana

    2016-01-01

    Nef proteins from all primate Lentiviruses, including the simian immunodeficiency virus of chimpanzees (SIVcpz), increase viral progeny infectivity. However, the function of Nef involved with the increase in viral infectivity is still not completely understood. Nonetheless, until now, studies investigating the functions of Nef from SIVcpz have been conducted in the context of the HIV-1 proviruses. In an attempt to investigate the role played by Nef during the replication cycle of an SIVcpz, a Nef-defective derivative was obtained from the SIVcpzWTGab2 clone by introducing a frame shift mutation at a unique restriction site within the nef sequence. This nef-deleted clone expresses an N-terminal 74-amino acid truncated peptide of Nef and was named SIVcpz-tNef. We found that the SIVcpz-tNef does not behave as a classic nef-deleted HIV-1 or simian immunodeficiency virus of macaques SIVmac. Markedly, SIVcpz-tNef progeny from both Hek-293T and Molt producer cells were completely non-infectious. Moreover, the loss in infectivity of SIVcpz-tNef correlated with the inhibition of Gag and GagPol processing. A marked accumulation of Gag and very low levels of reverse transcriptase were detected in viral lysates. Furthermore, these observations were reproduced once the tNef peptide was expressed in trans both in SIVcpzΔNef and HIV-1WT expressing cells, demonstrating that the truncated peptide is a dominant negative for viral processing and infectivity for both SIVcpz and HIV-1. We demonstrated that the truncated Nef peptide binds to GagPol outside the protease region and by doing so probably blocks processing of both GagPol and Gag precursors at a very early stage. This study demonstrates for the first time that naturally-occurring Nef peptides can potently block lentiviral processing and infectivity. PMID:27399760

  9. Building Blocks.

    ERIC Educational Resources Information Center

    Black, Susan

    2001-01-01

    Studies show that deteriorating school facilities take their toll on students' and teachers' health and morale. Classrooms should be accessible to the outdoors; clustered around a commons; adaptable and flexible; and aesthetically pleasing. Architects say natural lighting and noise reduction are routine parts of their job. Research studies support…

  10. Enhanced light trapping in periodically truncated cone silicon nanowire structure

    NASA Astrophysics Data System (ADS)

    Kai, Qiu; Yuhua, Zuo; Tianwei, Zhou; Zhi, Liu; Jun, Zheng; Chuanbo, Li; Buwen, Cheng

    2015-10-01

    Light trapping plays an important role in improving the conversion efficiency of thin-film solar cells. The good wideband light trapping is achieved using our periodically truncated cone Si nanowire (NW) structures, and their inherent mechanism is analyzed and simulated by FDTD solution software. Ordered cylinder Si NW structure with initial size of 80 nm and length of 200 nm is grown by pattern transfer and selective epitaxial growth. Truncated cone Si NW array is then obtained by thermal oxidation treatment. Its mean reflection in the range of 300-900 nm is lowered to be 5% using 140 nm long truncated cone Si NW structure, compared with that of 20% using cylinder counterparts. It indicates that periodically truncated Si cone structures trap the light efficiently to enhance the light harvesting in a wide spectral range and have the potential application in highly efficient NW solar cells. Project supported by the National Natural Science Foundation of China (Nos. 51072194, 61021003, 61036001, 61376057).

  11. Refractive turbulence effects on truncated Gaussian beam heterodyne lidar

    NASA Technical Reports Server (NTRS)

    Murty, R.

    1984-01-01

    A monostatic heterodyne lidar performance model is formulated to study the combined effects of beam truncation and refractive turbulence in the weak scintillation regime. The results show that there is a loss of signal power due to beam truncation and coherence loss, but there is also an enhancement of signal power due to log-amplitude covariance in suitable conditions of long paths with weak turbulence.

  12. The effect of truncation on very small cardiac SPECT camerasystems

    SciTech Connect

    Rohmer, Damien; Eisner, Robert L.; Gullberg, Grant T.

    2006-08-01

    Background: The limited transaxial field-of-view (FOV) of avery small cardiac SPECT camera system causes view-dependent truncationof the projection of structures exterior to, but near the heart. Basictomographic principles suggest that the reconstruction of non-attenuatedtruncated data gives a distortion-free image in the interior of thetruncated region, but the DC term of the Fourier spectrum of thereconstructed image is incorrect, meaning that the intensity scale of thereconstruction is inaccurate. The purpose of this study was tocharacterize the reconstructed image artifacts from truncated data, andto quantify their effects on the measurement of tracer uptake in themyocardial. Particular attention was given to instances where the heartwall is close to hot structures (structures of high activity uptake).Methods: The MCAT phantom was used to simulate a 2D slice of the heartregion. Truncated and non-truncated projections were formed both with andwithout attenuation. The reconstructions were analyzed for artifacts inthe myocardium caused by truncation, and for the effect that attenuationhas relative to increasing those artifacts. Results: The inaccuracy dueto truncation is primarily caused by an incorrect DC component. Forvisualizing theleft ventricular wall, this error is not worse than theeffect of attenuation. The addition of a small hot bowel-like structurenear the left ventricle causes few changes in counts on the wall. Largerartifacts due to the truncation are located at the boundary of thetruncation and can be eliminated by sinogram interpolation. Finally,algebraic reconstruction methods are shown to give better reconstructionresults than an analytical filtered back-projection reconstructionalgorithm. Conclusion: Small inaccuracies in reconstructed images fromsmall FOV camera systems should have little effect on clinicalinterpretation. However, changes in the degree of inaccuracy in countsfrom slice toslice are due to changes in the truncated structures

  13. An algorithm to estimate the object support in truncated images

    SciTech Connect

    Hsieh, Scott S.; Nett, Brian E.; Cao, Guangzhi; Pelc, Norbert J.

    2014-07-15

    Purpose: Truncation artifacts in CT occur if the object to be imaged extends past the scanner field of view (SFOV). These artifacts impede diagnosis and could possibly introduce errors in dose plans for radiation therapy. Several approaches exist for correcting truncation artifacts, but existing correction algorithms do not accurately recover the skin line (or support) of the patient, which is important in some dose planning methods. The purpose of this paper was to develop an iterative algorithm that recovers the support of the object. Methods: The authors assume that the truncated portion of the image is made up of soft tissue of uniform CT number and attempt to find a shape consistent with the measured data. Each known measurement in the sinogram is interpreted as an estimate of missing mass along a line. An initial estimate of the object support is generated by thresholding a reconstruction made using a previous truncation artifact correction algorithm (e.g., water cylinder extrapolation). This object support is iteratively deformed to reduce the inconsistency with the measured data. The missing data are estimated using this object support to complete the dataset. The method was tested on simulated and experimentally truncated CT data. Results: The proposed algorithm produces a better defined skin line than water cylinder extrapolation. On the experimental data, the RMS error of the skin line is reduced by about 60%. For moderately truncated images, some soft tissue contrast is retained near the SFOV. As the extent of truncation increases, the soft tissue contrast outside the SFOV becomes unusable although the skin line remains clearly defined, and in reformatted images it varies smoothly from slice to slice as expected. Conclusions: The support recovery algorithm provides a more accurate estimate of the patient outline than thresholded, basic water cylinder extrapolation, and may be preferred in some radiation therapy applications.

  14. Non-perturbative Renormalization in Truncated Yukawa Model

    NASA Astrophysics Data System (ADS)

    Karmanov, V. A.

    2016-06-01

    An approach to non-perturbative calculations in the light-front quantum field theory and its new developments are briefly reviewed. We start with the decomposition of the state vector in Fock components. After truncation of this decomposition (main approximation in this approach), the eigenvalue equation for the light-front Hamiltonian generates, in Minkowski space, a finite system of integral equations for the Fock components. Solving this system numerically and performing the non-perturbative renormalization, we find the state vector of fermion in the quenched scalar Yukawa model, up to the four-body truncation (one fermion + three bosons), for rather large values of the coupling constant. With the state vector, found in this way, the fermion electromagnetic form factors are calculated. Comparing results obtained in the four-body truncation with those found in the previous, three-body truncation, we discover very good convergence relative to truncation, that indicates that we are close to the exact non-perturbative solution in this field-theoretical model. The approach can be extended to more realistic field theories and, after further development, it could constitute an alternative to the lattice calculations.

  15. Dish antenna having switchable beamwidth. [with truncated concave ellipsoid subreflector

    NASA Technical Reports Server (NTRS)

    Schmidt, R. F. (Inventor)

    1975-01-01

    A switchable beamwidth antenna includes a concave parabolic main reflecting dish which has a central circular region and a surrounding coaxial annular region. A feed means selectively excites only the central region of the main dish via a truncated subreflector for wide beamwidth or substantially the entire main dish for narrow beamwidth. In one embodiment, the feed means comprises a truncated concave ellipsoid subreflector and separate feed terminations located at two foci of the ellipsoid. One feed termination directly views all of the main dish while the other feed termination, exciting the main dish via the subreflector, excites only the central region because of the subreflector truncation. In the another embodiment, the feed means comprises one feed termination and a convex hyperboloid subreflector via which the feed excites the main dish.

  16. Effects of truncation in modal representations of thermal convection

    NASA Technical Reports Server (NTRS)

    Marcus, P. S.

    1979-01-01

    The Galerkin (including single-mode and Lorenz) equations were examined for convection in a sphere to determine which physical processes are neglected when the equations of motion are truncated too severely. The conclusions were tested by calculating solutions to the equations of motion for different values of the Rayleigh number and for different values of the limit of the horizontal spatial resolution. It was shown that the transitions from steady state to periodic, then to aperiodic convection depend not only on the Rayleigh number but also very strongly on the horizontal resolution. One of the effects of truncation is to enhance the high wavenumber end of the kinetic energy and thermal variance spectra. The numerical examples indicate that as long as the kinetic energy spectrum decreases with wavenumber, a truncation gives a qualitatively correct solution.

  17. Truncated Long-Range Percolation on Oriented Graphs

    NASA Astrophysics Data System (ADS)

    van Enter, A. C. D.; de Lima, B. N. B.; Valesin, D.

    2016-07-01

    We consider different problems within the general theme of long-range percolation on oriented graphs. Our aim is to settle the so-called truncation question, described as follows. We are given probabilities that certain long-range oriented bonds are open; assuming that the sum of these probabilities is infinite, we ask if the probability of percolation is positive when we truncate the graph, disallowing bonds of range above a possibly large but finite threshold. We give some conditions in which the answer is affirmative. We also translate some of our results on oriented percolation to the context of a long-range contact process.

  18. A Flexible Variable Truncated Power Series Algebra in Zlib

    SciTech Connect

    Yan, Y.T.; /SLAC

    2011-08-25

    Zlib is a numerical library for Truncated Power Series Algebra (TPSA) and Lie Algebra for application to nonlinear analysis of single particle dynamics. The first version was developed in 1990 with the use of the One-Step Index Pointers (OSIP's). The OSIP's form the Zlib nerve that offers optimal computation and alloworder grading as well as flexible initialization of the global number of variables for the TPSA. While the OSIP's are still kept for minimum index passing to achieve efficient computation, Zlib has been being upgraded to allow flexible and gradable local number of variables in each C++ object of the Truncated Power Series (Tps) class. Possible applications using Zlib are discussed.

  19. Real-time low-energy fall detection algorithm with a programmable truncated MAC.

    PubMed

    de la Guia Solaz, Manuel; Bourke, Alan; Conway, Richard; Nelson, John; Olaighin, Gearoid

    2010-01-01

    The ability to discriminate between falls and activities of daily living (ADL) has been investigated by using tri-axial accelerometer sensors, mounted on the trunk and using simulated falls performed by young healthy subjects under supervised conditions and ADL performed by elderly subjects. In this paper we propose a power-aware real-time fall detection integrated circuit (IC) that can distinguish Falls from ADL by processing the accelerations measured during 240 falls and 240 ADL. In the proposed fixed point custom DSP architecture, a threshold algorithm was implemented to analyze the effectiveness of Programmable Truncated Multiplication regarding power reduction while maintaining a high output accuracy. The presented system runs a real time implementation of the algorithm on a low power architecture that allows up to 23% power savings through its digital blocks when compared to a standard implementation, without any accuracy loss. PMID:21095956

  20. SOUTHERLY STRETCH OF MILLBURY PORTION; CLOSER VIEW OF TRUNCATED NORTHERLY ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    SOUTHERLY STRETCH OF MILLBURY PORTION; CLOSER VIEW OF TRUNCATED NORTHERLY END OF TOWPATH BERM (RIGHT) AND CANAL PRISM (LEFT); VIEW TO SOUTH FROM LATER BORROW PIT - Blackstone Canal Worcester-Millbury Segment, Eastern bank of Blackstone River, Millbury, Worcester County, MA

  1. The truncation model of the derivative nonlinear Schroedinger equation

    SciTech Connect

    Sanchez-Arriaga, G.; Hada, T.; Nariyuki, Y.

    2009-04-15

    The derivative nonlinear Schroedinger (DNLS) equation is explored using a truncation model with three resonant traveling waves. In the conservative case, the system derives from a time-independent Hamiltonian function with only one degree of freedom and the solutions can be written using elliptic functions. In spite of its low dimensional order, the truncation model preserves some features from the DNLS equation. In particular, the modulational instability criterion fits with the existence of two hyperbolic fixed points joined by a heteroclinic orbit that forces the exchange of energy between the three waves. On the other hand, numerical integrations of the DNLS equation show that the truncation model fails when wave energy is increased or left-hand polarized modulational unstable modes are present. When dissipative and growth terms are added the system exhibits a very complex dynamics including appearance of several attractors, period doubling bifurcations leading to chaos as well as other nonlinear phenomenon. In this case, the validity of the truncation model depends on the strength of the dissipation and the kind of attractor investigated.

  2. Two truncated forms of rat insulin receptor-related receptor.

    PubMed

    Itoh, N; Jobo, K; Tsujimoto, K; Ohta, M; Kawasaki, T

    1993-08-25

    The insulin receptor-related receptor (IRR) (1271 amino acids) is expected to have unique functions as a novel member of the insulin receptor family. In this paper, we report two alternatively spliced variants of rat IRR mRNA, which are predicted to encode two truncated forms of IRR, sIRR-1 (410 amino acids) and sIRR-2 (469 amino acids). The amino acid sequence of sIRR-1 is identical to the N-terminal 410-amino acid sequence of IRR. sIRR-2 has an additional 59-amino acid insertion in the C-terminal region. Both truncated forms retain the N-terminal and cysteine-rich domains but lack the transmembrane and intracellular tyrosine kinase domains, indicating that the truncated forms are the secreted forms. The translation products of the truncated form mRNAs were detected in the stomach and kidney by Western analysis. However, the physiological significance of the secreted forms remains to be elucidated. PMID:7688734

  3. Truncation selection and payoff distributions applied to the replicator equation.

    PubMed

    Morsky, B; Bauch, C T

    2016-09-01

    The replicator equation has been frequently used in the theoretical literature to explain a diverse array of biological phenomena. However, it makes several simplifying assumptions, namely complete mixing, an infinite population, asexual reproduction, proportional selection, and mean payoffs. Here, we relax the conditions of mean payoffs and proportional selection by incorporating payoff distributions and truncation selection into extensions of the replicator equation and agent-based models. In truncation selection, replicators with fitnesses above a threshold survive. The reproduction rate is equal for all survivors and is sufficient to replace the replicators that did not survive. We distinguish between two types of truncation: independent and dependent with respect to the fitness threshold. If the payoff variances from all strategy pairing are the same, then we recover the replicator equation from the independent truncation equation. However, if all payoff variances are not equal, then any boundary fixed point can be made stable (or unstable) if only the fitness threshold is chosen appropriately. We observed transient and complex dynamics in our models, which are not observed in replicator equations incorporating the same games. We conclude that the assumptions of mean payoffs and proportional selection in the replicator equation significantly impact replicator dynamics. PMID:27343031

  4. 12. DOUBLEDAY AVENUE NEAR MUMMASBURG ROAD. NOTE TRUNCATED OBSERVATION TOWER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    12. DOUBLEDAY AVENUE NEAR MUMMASBURG ROAD. NOTE TRUNCATED OBSERVATION TOWER AND ROAD SIGN VARIATIONS (CAST IRON PLACE NAME AT LEFT / AUTO TOUR SIGN AT RIGHT). ALSO NOTE CONCRETE BOLLARDS TO CONTROL PARKING. VIEW S. - Gettysburg National Military Park Tour Roads, Gettysburg, Adams County, PA

  5. 78 FR 6273 - IRS Truncated Taxpayer Identification Numbers; Correction

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-30

    ...This document contains corrections to a notice of proposed rulemaking (REG-148873-09) and notice of public hearing that was published in the Federal Register on Monday, January 7, 2013 (78 FR 913). The proposed regulation provides guidance regarding creating a new taxpayer identifying number known as an IRS truncated taxpayer identification number, a...

  6. Mediation of opioid analgesia by a truncated 6-transmembrane GPCR

    PubMed Central

    Lu, Zhigang; Xu, Jin; Rossi, Grace C.; Majumdar, Susruta; Pasternak, Gavril W.; Pan, Ying-Xian

    2015-01-01

    The generation of potent opioid analgesics that lack the side effects of traditional opioids may be possible by targeting truncated splice variants of the μ-opioid receptor. μ-Opioids act through GPCRs that are generated from the Oprm1 gene, which undergoes extensive alternative splicing. The most abundant set of Oprm1 variants encode classical full-length 7 transmembrane domain (7TM) μ-opioid receptors that mediate the actions of the traditional μ-opioid drugs morphine and methadone. In contrast, 3-iodobenzoyl-6β-naltrexamide (IBNtxA) is a potent analgesic against thermal, inflammatory, and neuropathic pain that acts independently of 7TM μ-opioid receptors but has no activity in mice lacking a set of 6TM truncated μ-opioid receptor splice variants. Unlike traditional opioids, IBNtxA does not depress respiration or result in physical dependence or reward behavior, suggesting it acts through an alternative μ-opioid receptor target. Here we demonstrated that a truncated 6TM splice variant, mMOR-1G, can rescue IBNtxA analgesia in a μ-opioid receptor–deficient mouse that lacks all Oprm1 splice variants, ablating μ-opioid activity in these animals. Intrathecal administration of lentivirus containing the 6TM variant mMOR-1G restored IBNtxA, but not morphine, analgesia in Oprm1-deficient animals. Together, these results confirm that a truncated 6TM GPCR is both necessary and sufficient for IBNtxA analgesia. PMID:26011641

  7. On the ijk forms of the truncated LU decomposition

    NASA Astrophysics Data System (ADS)

    Mohsen, A.

    2009-11-01

    Matrix LU decomposition has six ijk forms. Different forms have different computational complexities and storage requirements, particularly on vector and parallel computers. Other factors governing the choice of a particular form are considered. For treating Fredholm integral equations of the first kind, the truncated LU decomposition of the resulting system matrix is recommended. Required modifications to selected known ijk forms are presented.

  8. Assessing association between protein truncating variants and quantitative traits

    PubMed Central

    Rivas, Manuel A.; Pirinen, Matti; Neville, Matthew J.; Gaulton, Kyle J.; Moutsianas, Loukas; Lindgren, Cecilia M.; Karpe, Fredrik; McCarthy, Mark I.; Donnelly, Peter

    2013-01-01

    Motivation: In sequencing studies of common diseases and quantitative traits, power to test rare and low frequency variants individually is weak. To improve power, a common approach is to combine statistical evidence from several genetic variants in a region. Major challenges are how to do the combining and which statistical framework to use. General approaches for testing association between rare variants and quantitative traits include aggregating genotypes and trait values, referred to as ‘collapsing’, or using a score-based variance component test. However, little attention has been paid to alternative models tailored for protein truncating variants. Recent studies have highlighted the important role that protein truncating variants, commonly referred to as ‘loss of function’ variants, may have on disease susceptibility and quantitative levels of biomarkers. We propose a Bayesian modelling framework for the analysis of protein truncating variants and quantitative traits. Results: Our simulation results show that our models have an advantage over the commonly used methods. We apply our models to sequence and exome-array data and discover strong evidence of association between low plasma triglyceride levels and protein truncating variants at APOC3 (Apolipoprotein C3). Availability: Software is available from http://www.well.ox.ac.uk/~rivas/mamba Contact: donnelly@well.ox.ac.uk PMID:23860716

  9. Consistent N=8 truncation of massive IIA on S 6

    NASA Astrophysics Data System (ADS)

    Guarino, Adolfo; Varela, Oscar

    2015-12-01

    Massive type IIA supergravity is shown to admit a consistent truncation on the six-sphere to maximal supergravity in four dimensions with a dyonic ISO(7) gauging. We obtain the complete, non-linear embedding of all the D = 4 fields into the IIA metric and form potentials, and show its consistency. We first rewrite the IIA theory in an SO(1 , 3) × SL(7)-covariant way. Then, we employ an N=8 SL(7)-covariant restriction of the D = 4 tensor hierarchy in order to find the full embedding. The redundant D = 4 degrees of freedom introduced by the tensor hierarchy can be eliminated by writing the embedding in terms of the field strengths and exploiting the restricted duality hierarchy. In particular, closed expressions for the Freund-Rubin term are found using this technique which reveal a pattern valid for other truncations. Finally, we show that the present N=8 truncation of massive IIA on S 6 and the N=2 truncation obtained when S 6 is equipped with its nearly-Kähler structure, overlap in the N=1 , G2-invariant sector of the former.

  10. Two-step iterative reconstruction of region-of-interest with truncated projection in computed tomography

    NASA Astrophysics Data System (ADS)

    Yamakawa, Keisuke; Kojima, Shinichi

    2014-03-01

    Iteratively reconstructing data only inside the region of interest (ROI) is widely used to acquire CT images in less computation time while maintaining high spatial resolution. A method that subtracts projected data outside the ROI from full-coverage measured data has been proposed. A serious problem with this method is that the accuracy of the measured data confined inside the ROI decreases according to the truncation error outside the ROI. We propose a two-step iterative method that reconstructs image inside the full-coverage in addition to a conventional iterative method inside the ROI to reduce the truncation error inside full-coverage images. Statistical information (e.g., quantum-noise distributions) acquired by detected X-ray photons is generally used in iterative methods as a photon weight to efficiently reduce image noise. Our proposed method applies one of two kinds of weights (photon or constant weights) chosen adaptively by taking into consideration the influence of truncation error. The effectiveness of the proposed method compared with that of the conventional method was evaluated in terms of simulated CT values by using elliptical phantoms and an abdomen phantom. The standard deviation of error and the average absolute error of the proposed method on the profile curve were respectively reduced from 3.4 to 0.4 [HU] and from 2.8 to 0.8 [HU] compared with that of the conventional method. As a result, applying a suitable weight on the basis of a target object made it possible to effectively reduce the errors in CT images.

  11. Truncation and use of model-coordinate data

    NASA Astrophysics Data System (ADS)

    Trenberth, Kevin E.

    1995-05-01

    The advantages and disadvantages of using global analyses on pressure level surfaces versus model (sigma or hybrid) level surfaces are explored. Model levels consist of a terrain-following coordinate in the lowest levels but may gradually transition to pressure with height. One major issue is that the model surface often does not correspond with the earth's real surface. Another is that a change in horizontal resolution is not well defined because the vertical coordinate also changes in the process. However, such changes are required as comparison of analyses from one center with another or with model output requires a common vertical coordinate. Also, a reduction from high resolution with 106 waves (T106 resolution) to a moderate resolution with, say, 42 waves (T42), so as to reduce the size of datasets by a factor of about 6, is often desirable. Another issue involves the meaning and use of time averages on model surfaces and their relationship to corresponding time averages on pressure surfaces. The traditional representation on constant pressure surfaces has much to recommend it and is widely used and familiar to the community, but suffers from errors arising from interpolation to the pressure surfaces and the need to properly treat regions of those surfaces that are below ground (in regions of high topography). Spectral truncation and resolution changes are well defined on pressure surfaces. Test results are presented for cases where T106 analyses on model surfaces are (1) transformed to pressure and then truncated, (2) truncated and then transformed to pressure levels, and (3) then compared at comparable resolutions. The differences arise mainly from the ill-posed truncation on model surfaces, but also from vertical interpolations. These tests are also applied to a heat budget calculation involving nonlinear terms for one month. However, the latter comparison also brings in considerations of how best to do time averaging. Fortunately, in practical terms

  12. Block 3, People in Cities: An Ecological Approach.

    ERIC Educational Resources Information Center

    Oates, John

    An Open University course text, People in Cities--An Ecological Approach (Block 3), is presented. Three sections of the block are: the ecology of urban life, socialization and some implications for the urban child, and the compensatory debate. Some of the adaptive processes and ways in which failures of adaptation are distributed in different…

  13. Exploring Quantum Many-Body Spin Dynamics with Truncated Wigner Methods

    NASA Astrophysics Data System (ADS)

    Schachenmayer, Johannes

    Recent experiments in atomic, molecular, and optical physics offer controlled and clean environments to experimentally study non-equilibrium dynamics of large many-body quantum spin-models with variable range interactions. Thus, efficient computation of such dynamics is of great importance. While in one dimension, time-dependent density matrix renormalization group methods (t-DMRG) have proven effective under certain conditions, computing dynamics in higher dimensional systems remains an outstanding challenge. Recently we formulated the discrete truncated Wigner approximation (DTWA), a semiclassical method based on the truncated Wigner approximation (TWA) that has been proven to be surprisingly accurate in predicting quench dynamics in high-dimensional lattices with up to tens of thousands of quantum spins. Here, we introduce the DTWA and show how it can compute time-evolution of quantum states in experiments that engineer spin-models with polar molecules in optical lattices or with ions in two-dimensional Penning traps. We show, how the DTWA can provide results for the time-evolution of classical and quantum correlations in quench experiments in regimes where other numerical methods are generally unreliable. We report on progress of how to incorporate higher order corrections to the method, and how to adapt it to systems with both spin and bosonic degrees of freedom.

  14. Hybrubins: Bipyrrole Tetramic Acids Obtained by Crosstalk between a Truncated Undecylprodigiosin Pathway and Heterologous Tetramic Acid Biosynthetic Genes.

    PubMed

    Zhao, Zhilong; Shi, Ting; Xu, Min; Brock, Nelson L; Zhao, Yi-Lei; Wang, Yemin; Deng, Zixin; Pang, Xiuhua; Tao, Meifeng

    2016-02-01

    Heterologous expression of bacterial artificial chromosome (BAC) clones from the genomic library of Streptomyces variabilis Snt24 in Streptomyces lividans SBT5 which carried a truncated undecylprodigiosin biosynthetic gene cluster led to the identification of hybrubins A-C. The hybrubins represent a new carbon skeleton in which a tetramic acid moiety is fused to a 2,2'-dipyrrole building block. Gene knockout experiments confirmed that hybrubins are derived from two convergent biosynthetic pathways including the remaining genomic red genes of S. lividans SBT5 as well as the BAC encoded hbn genes for the production of 5-ethylidenetetramic acid. A possible biosynthetic pathway was also proposed. PMID:26800378

  15. Types of Heart Block

    MedlinePlus

    ... Block Explore Heart Block What Is... Electrical System & EKG Results Types Causes Who Is at Risk Signs & ... the P and the R waves on the EKG (electrocardiogram). First-degree heart block may not cause ...

  16. Data consistency conditions for truncated fanbeam and parallel projections

    SciTech Connect

    Clackdoyle, Rolf; Desbat, Laurent

    2015-02-15

    Purpose: In image reconstruction from projections, data consistency conditions (DCCs) are mathematical relationships that express the overlap of information between ideal projections. DCCs have been incorporated in image reconstruction procedures for positron emission tomography, single photon emission computed tomography, and x-ray computed tomography (CT). Building on published fanbeam DCCs for nontruncated projections along a line, the authors recently announced new DCCs that can be applied to truncated parallel projections in classical (two-dimensional) image reconstruction. These DCCs take the form of polynomial expressions for a weighted backprojection of the projections. The purpose of this work was to present the new DCCs for truncated parallel projections, to extend these conditions to truncated fanbeam projections on a circular trajectory, to verify the conditions with numerical examples, and to present a model of how DCCs could be applied with a toy problem in patient motion estimation with truncated projections. Methods: A mathematical derivation of the new parallel DCCs was performed by substituting the underlying imaging equation into the mathematical expression for the weighted backprojection and demonstrating the resulting polynomial form. This DCC result was extended to fanbeam projections by a substitution of parallel to fanbeam variables. Ideal fanbeam projections of a simple mathematical phantom were simulated and the DCCs for these projections were evaluated by fitting polynomials to the weighted backprojection. For the motion estimation problem, a parametrized motion was simulated using a dynamic version of the mathematical phantom, and both noiseless and noisy fanbeam projections were simulated for a full circular trajectory. The fanbeam DCCs were applied to extract the motion parameters, which allowed the motion contamination to be removed from the projections. A reconstruction was performed from the corrected projections. Results: The

  17. Caspase-3-mediated Cleavage of Cdc6 Induces Nuclear Localization of p49-truncated Cdc6 and Apoptosis

    PubMed Central

    Yim, Hyungshin; Jin, Ying Hua; Park, Byoung Duck; Choi, Hye Jin; Lee, Seung Ki

    2003-01-01

    We show that Cdc6, an essential initiation factor for DNA replication, undergoes caspase-3–mediated cleavage in the early stages of apoptosis in HeLa cells and SK-HEP-1 cells induced by etoposide, paclitaxel, ginsenoside Rh2, or tumor necrosis factor-related apoptosis-inducing ligand. The cleavage occurs at the SEVD442/G motif and generates an N-terminal truncated Cdc6 fragment (p49-tCdc6) that lacks the carboxy-terminal nuclear export sequence. Cdc6 is known to be phosphorylated by cyclin A-cyclin dependent kinase 2 (Cdk2), an event that promotes its exit from the nucleus and probably blocks it from initiating inappropriate DNA replication. In contrast, p49-tCdc6 translocation to the cytoplasm is markedly reduced under the up-regulated conditions of Cdk2 activity, which is possibly due to the loss of nuclear export sequence. Thus, truncation of Cdc6 results in an increased nuclear retention of p49-tCdc6 that could act as a dominant negative inhibitor of DNA replication and its accumulation in the nucleus could promote apoptosis. Supporting this is that the ectopic expression of p49-tCdc6 not only promotes apoptosis of etoposide-induced HeLa cells but also induces apoptosis in untreated cells. Thus, the caspase-mediated cleavage of Cdc6 creates a truncated Cdc6 fragment that is retained in the nucleus and induces apoptosis. PMID:14517333

  18. Truncating mutation in the autophagy gene UVRAG confers oncogenic properties and chemosensitivity in colorectal cancers

    PubMed Central

    He, Shanshan; Zhao, Zhen; Yang, Yongfei; O'Connell, Douglas; Zhang, Xiaowei; Oh, Soohwan; Ma, Binyun; Lee, Joo-Hyung; Zhang, Tian; Varghese, Bino; Yip, Janae; Dolatshahi Pirooz, Sara; Li, Ming; Zhang, Yong; Li, Guo-Min; Ellen Martin, Sue; Machida, Keigo; Liang, Chengyu

    2015-01-01

    Autophagy-related factors are implicated in metabolic adaptation and cancer metastasis. However, the role of autophagy factors in cancer progression and their effect in treatment response remain largely elusive. Recent studies have shown that UVRAG, a key autophagic tumour suppressor, is mutated in common human cancers. Here we demonstrate that the cancer-related UVRAG frameshift (FS), which does not result in a null mutation, is expressed as a truncated UVRAGFS in colorectal cancer (CRC) with microsatellite instability (MSI), and promotes tumorigenesis. UVRAGFS abrogates the normal functions of UVRAG, including autophagy, in a dominant-negative manner. Furthermore, expression of UVRAGFS can trigger CRC metastatic spread through Rac1 activation and epithelial-to-mesenchymal transition, independently of autophagy. Interestingly, UVRAGFS expression renders cells more sensitive to standard chemotherapy regimen due to a DNA repair defect. These results identify UVRAG as a new MSI target gene and provide a mechanism for UVRAG participation in CRC pathogenesis and treatment response. PMID:26234763

  19. Estimators for the truncated beta-binomial distribution

    SciTech Connect

    Atwood, C.L.

    1980-01-01

    Let X have a beta-binomial(m,p,theta) distribution, truncated such that X > t for t = 0 or 1. Suppose that independent observations of X are available. A consistent estimator of (p,theta) is given, based on the first three sample moments. This may be used as a start for maximum likelihood estimation or jackknifing. The standard assumptions for a C(..cap alpha..) is truncated binomial do not hold; however, a test is proposed based on jackknifing the sample variance of X. Some Monte Carlo comparisons are given. For moderately small data sets, these comparisons show that the moment estimator is often superior to the MLE, and the C(..cap alpha..) test is superior to other proposed tests, in spite of its lack of theoretical justification. 3 figures, 5 tables.

  20. Reconstructions from parallel- and fan-beam data with truncations

    NASA Astrophysics Data System (ADS)

    Xia, Dan; Zou, Yu; Pan, Xiaochuan

    2006-03-01

    A formula was recently described by Clackdoyle et. al. for image reconstruction within a region of interest (ROI) from knowledge of its truncated 2D Radon transform. In this work, we present an alternative, simple derivation of the formula by using the well-known relationship between the parallel-beam and fan-beam geometries. Based upon our derivation, the role of parameter t in the formula in ROI-image reconstruction can be clearly identified. We show that the parameter t determines the size of a reconstructible ROI from parallel-beam data containing truncations. Numerical studies were performed to by use of the formula with different t. We show that the formula yields ROI images with smaller sizes and lower quality than does our backprojection filtration algorithm.

  1. A truncation error injection approach to viscous-inviscid interaction

    NASA Technical Reports Server (NTRS)

    Goble, B. D.; Fung, K.-Y.

    1987-01-01

    An approach to viscous-inviscid interaction which is based on truncation error injection is presented in the context of solving flow over an airfoil. A two-dimensional interpolation scheme is used to restrict the fine grid solutions to the global coarse grid. Details on the current implementation of the approach are given, and the boundary conditions being used are discussed. Inviscid results from a NACA0012 airfoil test case and the viscous results are presented.

  2. Truncation artifact and boundary artifact reduction in breast tomosynthesis reconstruction

    NASA Astrophysics Data System (ADS)

    Zhang, Yiheng; Chan, Heang-Ping; Wu, Yi-Ta; Sahiner, Berkman; Zhou, Chuan; Wei, Jun; Ge, Jun; Hadjiiski, Lubomir M.; Shi, Jiazheng

    2008-03-01

    Digital Tomosynthesis Mammography (DTM) is an emerging technique that has the potential to improve breast cancer detection. DTM acquires low-dose mammograms at a number of projection angles over a limited angular range and reconstructs the 3D breast volume. Due to the limited number of projections within a limited angular range and the finite size of the detector, DTM reconstruction contains boundary and truncation artifacts that degrade the image quality of the tomosynthesized slices, especially that of the boundary and truncated regions. In this work, we developed artifact reduction methods that make use of both 2D and 3D breast boundary information and local intensity-equalization and tissue-compensation techniques. A breast phantom containing test objects and a selected DTM patient case were used to evaluate the effects of artifact reduction. The contrast-to-noise ratio (CNR), the normalized profiles of test objects, and a non-uniformity error index were used as performance measures. A GE prototype DTM system was used to acquire 21 PVs in 3° increments over a +/-30° angular range. The Simultaneous Algebraic Reconstruction Technique (SART) was used for DTM reconstruction. Our results demonstrated that the proposed methods can improve the image quality both qualitatively and quantitatively, resulting in increased CNR value, background uniformity and an overall reconstruction quality comparable to that without truncation. For the selected DTM patient case, the obscured breast structural information near the truncated regions was essentially recovered. In addition, restricting SART reconstruction to be performed within the estimated 3D breast volume increased the computation efficiency.

  3. Some new applications of truncated Gauss-Laguerre quadrature formulas

    NASA Astrophysics Data System (ADS)

    Mastroianni, G.; Monegato, G.

    2008-12-01

    We show how truncated Gauss-Laguerre quadrature formulas can be used to produce accurate approximations and high rates of convergence, also when they are applied to integrand functions having only an algebraic type decay to zero at infinity. The approach presented in the paper is proposed for the computation of integrals and for the construction of Nyström type interpolants for some second kind integral equations.

  4. Power conservation for reflector antennas with truncated feed patterns

    NASA Technical Reports Server (NTRS)

    Rush, W. V. T.; Cramer, P.

    1976-01-01

    Reflector-antenna calculations using idealised truncated feed patterns can lead to incorrect values of total secondary radiated power. It is demonstrated that this discrepancy is due to the presence of higher-order spherical modes incident on the reflector. When a proper spherical-wave expansion of the incident field is used, in conjunction with the physical-optics technique, to determine the scattered field, the total power of the scattered field will equal the power radiated by the feed.

  5. Technical Pitfalls of Signal Truncation in Perfusion MRI of Glioblastoma

    PubMed Central

    Wong, Kelvin K.; Fung, Steve H.; New, Pamela Z.; Wong, Stephen T. C.

    2016-01-01

    Dynamic susceptibility contrast (DSC) perfusion-weighted imaging (PWI) is widely used in clinical settings for the radiological diagnosis of brain tumor. The signal change in brain tissue in gradient echo-based DSC PWI is much higher than in spin echo-based DSC PWI. Due to its exquisite sensitivity, gradient echo-based sequence is the preferred method for imaging of all tumors except those near the base of the skull. However, high sensitivity also comes with a dynamic range problem. It is not unusual for blood volume to increase in gene-mediated cytotoxic immunotherapy-treated glioblastoma patients. The increase of fractional blood volume sometimes saturates the MRI signal during first-pass contrast bolus arrival and presents signal truncation artifacts of various degrees in the tumor when a significant amount of blood exists in the image pixels. It presents a hidden challenge in PWI, as this signal floor can be either close to noise level or just above and can go no lower. This signal truncation in the signal intensity time course is a significant issue that deserves attention in DSC PWI. In this paper, we demonstrate that relative cerebral blood volume and relative cerebral blood flow (rCBF) are underestimated due to signal truncation in DSC perfusion, in glioblastoma patients. We propose the use of second-pass tissue residue function in rCBF calculation using least-absolute-deviation deconvolution to avoid the underestimation problem. PMID:27531989

  6. Technical Pitfalls of Signal Truncation in Perfusion MRI of Glioblastoma.

    PubMed

    Wong, Kelvin K; Fung, Steve H; New, Pamela Z; Wong, Stephen T C

    2016-01-01

    Dynamic susceptibility contrast (DSC) perfusion-weighted imaging (PWI) is widely used in clinical settings for the radiological diagnosis of brain tumor. The signal change in brain tissue in gradient echo-based DSC PWI is much higher than in spin echo-based DSC PWI. Due to its exquisite sensitivity, gradient echo-based sequence is the preferred method for imaging of all tumors except those near the base of the skull. However, high sensitivity also comes with a dynamic range problem. It is not unusual for blood volume to increase in gene-mediated cytotoxic immunotherapy-treated glioblastoma patients. The increase of fractional blood volume sometimes saturates the MRI signal during first-pass contrast bolus arrival and presents signal truncation artifacts of various degrees in the tumor when a significant amount of blood exists in the image pixels. It presents a hidden challenge in PWI, as this signal floor can be either close to noise level or just above and can go no lower. This signal truncation in the signal intensity time course is a significant issue that deserves attention in DSC PWI. In this paper, we demonstrate that relative cerebral blood volume and relative cerebral blood flow (rCBF) are underestimated due to signal truncation in DSC perfusion, in glioblastoma patients. We propose the use of second-pass tissue residue function in rCBF calculation using least-absolute-deviation deconvolution to avoid the underestimation problem. PMID:27531989

  7. Importance-truncated large-scale shell model

    NASA Astrophysics Data System (ADS)

    Stumpf, Christina; Braun, Jonas; Roth, Robert

    2016-02-01

    We propose an importance-truncation scheme for the large-scale nuclear shell model that extends its range of applicability to larger valence spaces and midshell nuclei. It is based on a perturbative measure for the importance of individual basis states that acts as an additional truncation for the many-body model space in which the eigenvalue problem of the Hamiltonian is solved numerically. Through a posteriori extrapolations of all observables to vanishing importance threshold, the full shell-model results can be recovered. In addition to simple threshold extrapolations, we explore extrapolations based on the energy variance. We apply the importance-truncated shell model for the study of 56Ni in the p f valence space and of 60Zn and 64Ge in the p f g9 /2 space. We demonstrate the efficiency and accuracy of the approach, which pave the way for future applications of valence-space interactions derived in ab initio approaches in larger valence spaces.

  8. Incremental truncation of PHA synthases results in altered product specificity.

    PubMed

    Wang, Qian; Xia, Yongzhen; Chen, Quan; Qi, Qingsheng

    2012-05-10

    PHA synthase is the key enzyme involved in the biosynthesis of microbial polymers, polyhydroxyalkanoates (PHA). In this study, we created a hybrid library of PHA synthase gene with different crossover points by an incremental truncation method between the C-terminal fragments of the phaC(Cn) (phaC from Cupriavidus necator) and the N-terminal fragments of the phaC1(Pa) (phaC from Pseudomonas aeruginosa). As the truncation of the hybrid enzyme increased, the in vivo PHB synthesis ability of the hybrids declined gradually. PHA synthase PhaC(Cn) with a deletion on N-terminal up to 83 amino acid residues showed no synthase activity. While with the removal of up to 270 amino acids from the N-terminus, the activity of the truncated PhaC(Cn) could be complemented by the N-terminus of PhaC1(Pa). Three of the hybrid enzymes W188, W235 and W272 (named by the deleted nucleic acid number) were found to have altered product specificities. PMID:22500895

  9. Parameterizing the power spectrum: Beyond the truncated Taylor expansion

    SciTech Connect

    Abazajian, Kevork; Kadota, Kenji; Stewart, Ewan D.; /KAIST, Taejon /Canadian Inst. Theor. Astrophys.

    2005-07-01

    The power spectrum is traditionally parameterized by a truncated Taylor series: ln P(k) = ln P{sub *} + (n{sub *} - 1) ln(k/k{sub *}) + 1/2 n'{sub *} ln{sup 2} (k/k{sub *}). It is reasonable to truncate the Taylor series if |n'{sub *} ln(k/k{sub *})| << |n{sub *} - 1|, but it is not if |n'{sub *} ln(k/k{sub *})| {approx}> |n{sub *} - 1|. We argue that there is no good theoretical reason to prefer |n'{sub *}| << |n{sub *} - 1|, and show that current observations are consistent with |n*{sub *} ln(k/k{sub *})| {approx} |n{sub *} - 1| even for |ln(k/k{sub *})| {approx} 1. Thus, there are regions of parameter space, which are both theoretically and observationally relevant, for which the traditional truncated Taylor series parameterization is inconsistent, and hence it can lead to incorrect parameter estimations. Motivated by this, we propose a simple extension of the traditional parameterization, which uses no extra parameters, but that, unlike the traditional approach, covers well motivated inflationary spectra with |n'{sub *}| {approx} |n{sub *} - 1|. Our parameterization therefore covers not only standard-slow-roll inflation models but also a much wider class of inflation models. We use this parameterization to perform a likelihood analysis for the cosmological parameters.

  10. Two distinct truncated variants of ankyrin associated with hereditary spherocytosis.

    PubMed

    Hayette, S; Carré, G; Bozon, M; Alloisio, N; Maillet, P; Wilmotte, R; Pascal, O; Reynaud, J; Reman, O; Stéphan, J L; Morlé, L; Delaunay, J

    1998-05-01

    We present two distinct truncated variants of ankyrin associated with mild to moderate hereditary spherocytosis. Ankyrin Saint-Etienne 1 was manifested by an additional band located between bands 2.1 and 2.2. It was associated with a nonsense mutation in exon 39: TGG-->TGA; W1721X. Ankyrin Saint-Etienne 2 appeared as two faint bands underlining bands 2.1 and 2.2. It was associated with a nonsense mutation in exon 41: CGA-->TGA; R1833X. Overall ankyrin was diminished in splenectomized patients. Messenger RNAs Saint-Etienne 1 and 2 amounted to 20 and 37% of the total ankyrin mRNA, respectively. Ankyrin molecules truncated in their C-terminal region retain some ability to bind to the membrane whereas the bulk of nonsense mutations, located in more upstream regions, result in the mere disappearance of one haploid set of ankyrin. In the present cases, it was not possible to apportion the roles of ankyrin reduction and truncation in the pathogenesis of hereditary spherocytosis. PMID:9590147

  11. Frequency domain FIR and IIR adaptive filters

    NASA Technical Reports Server (NTRS)

    Lynn, D. W.

    1990-01-01

    A discussion of the LMS adaptive filter relating to its convergence characteristics and the problems associated with disparate eigenvalues is presented. This is used to introduce the concept of proportional convergence. An approach is used to analyze the convergence characteristics of block frequency-domain adaptive filters. This leads to a development showing how the frequency-domain FIR adaptive filter is easily modified to provide proportional convergence. These ideas are extended to a block frequency-domain IIR adaptive filter and the idea of proportional convergence is applied. Experimental results illustrating proportional convergence in both FIR and IIR frequency-domain block adaptive filters is presented.

  12. Reducing C-terminal-truncated alpha-synuclein by immunotherapy attenuates neurodegeneration and propagation in Parkinson's disease-like models.

    PubMed

    Games, Dora; Valera, Elvira; Spencer, Brian; Rockenstein, Edward; Mante, Michael; Adame, Anthony; Patrick, Christina; Ubhi, Kiren; Nuber, Silke; Sacayon, Patricia; Zago, Wagner; Seubert, Peter; Barbour, Robin; Schenk, Dale; Masliah, Eliezer

    2014-07-01

    Parkinson's disease (PD) and dementia with Lewy bodies (DLB) are common neurodegenerative disorders of the aging population, characterized by progressive and abnormal accumulation of α-synuclein (α-syn). Recent studies have shown that C-terminus (CT) truncation and propagation of α-syn play a role in the pathogenesis of PD/DLB. Therefore, we explored the effect of passive immunization against the CT of α-syn in the mThy1-α-syn transgenic (tg) mouse model, which resembles the striato-nigral and motor deficits of PD. Mice were immunized with the new monoclonal antibodies 1H7, 5C1, or 5D12, all directed against the CT of α-syn. CT α-syn antibodies attenuated synaptic and axonal pathology, reduced the accumulation of CT-truncated α-syn (CT-α-syn) in axons, rescued the loss of tyrosine hydroxylase fibers in striatum, and improved motor and memory deficits. Among them, 1H7 and 5C1 were most effective at decreasing levels of CT-α-syn and higher-molecular-weight aggregates. Furthermore, in vitro studies showed that preincubation of recombinant α-syn with 1H7 and 5C1 prevented CT cleavage of α-syn. In a cell-based system, CT antibodies reduced cell-to-cell propagation of full-length α-syn, but not of the CT-α-syn that lacked the 118-126 aa recognition site needed for antibody binding. Furthermore, the results obtained after lentiviral expression of α-syn suggest that antibodies might be blocking the extracellular truncation of α-syn by calpain-1. Together, these results demonstrate that antibodies against the CT of α-syn reduce levels of CT-truncated fragments of the protein and its propagation, thus ameliorating PD-like pathology and improving behavioral and motor functions in a mouse model of this disease. PMID:25009275

  13. Reducing C-Terminal-Truncated Alpha-Synuclein by Immunotherapy Attenuates Neurodegeneration and Propagation in Parkinson's Disease-Like Models

    PubMed Central

    Games, Dora; Valera, Elvira; Spencer, Brian; Rockenstein, Edward; Mante, Michael; Adame, Anthony; Patrick, Christina; Ubhi, Kiren; Nuber, Silke; Sacayon, Patricia; Zago, Wagner; Seubert, Peter; Barbour, Robin; Schenk, Dale

    2014-01-01

    Parkinson's disease (PD) and dementia with Lewy bodies (DLB) are common neurodegenerative disorders of the aging population, characterized by progressive and abnormal accumulation of α-synuclein (α-syn). Recent studies have shown that C-terminus (CT) truncation and propagation of α-syn play a role in the pathogenesis of PD/DLB. Therefore, we explored the effect of passive immunization against the CT of α-syn in the mThy1-α-syn transgenic (tg) mouse model, which resembles the striato-nigral and motor deficits of PD. Mice were immunized with the new monoclonal antibodies 1H7, 5C1, or 5D12, all directed against the CT of α-syn. CT α-syn antibodies attenuated synaptic and axonal pathology, reduced the accumulation of CT-truncated α-syn (CT-α-syn) in axons, rescued the loss of tyrosine hydroxylase fibers in striatum, and improved motor and memory deficits. Among them, 1H7 and 5C1 were most effective at decreasing levels of CT-α-syn and higher-molecular-weight aggregates. Furthermore, in vitro studies showed that preincubation of recombinant α-syn with 1H7 and 5C1 prevented CT cleavage of α-syn. In a cell-based system, CT antibodies reduced cell-to-cell propagation of full-length α-syn, but not of the CT-α-syn that lacked the 118–126 aa recognition site needed for antibody binding. Furthermore, the results obtained after lentiviral expression of α-syn suggest that antibodies might be blocking the extracellular truncation of α-syn by calpain-1. Together, these results demonstrate that antibodies against the CT of α-syn reduce levels of CT-truncated fragments of the protein and its propagation, thus ameliorating PD-like pathology and improving behavioral and motor functions in a mouse model of this disease. PMID:25009275

  14. Identification of target genes for wild type and truncated HMGA2 in mesenchymal stem-like cells

    PubMed Central

    2010-01-01

    Background The HMGA2 gene, coding for an architectural transcription factor involved in mesenchymal embryogenesis, is frequently deranged by translocation and/or amplification in mesenchymal tumours, generally leading to over-expression of shortened transcripts and a truncated protein. Methods To identify pathways that are affected by sarcoma-associated variants of HMGA2, we have over-expressed wild type and truncated HMGA2 protein in an immortalized mesenchymal stem-like cell (MSC) line, and investigated the localisation of these proteins and their effects on differentiation and gene expression patterns. Results Over-expression of both transgenes blocked adipogenic differentiation of these cells, and microarray analysis revealed clear changes in gene expression patterns, more pronounced for the truncated protein. Most of the genes that showed altered expression in the HMGA2-overexpressing cells fell into the group of NF-κB-target genes, suggesting a central role for HMGA2 in this pathway. Of particular interest was the pronounced up-regulation of SSX1, already implicated in mesenchymal oncogenesis and stem cell functions, only in cells expressing the truncated protein. Furthermore, over-expression of both HMGA2 forms was associated with a strong repression of the epithelial marker CD24, consistent with the reported low level of CD24 in cancer stem cells. Conclusions We conclude that the c-terminal part of HMGA2 has important functions at least in mesenchymal cells, and the changes in gene expression resulting from overexpressing a protein lacking this domain may add to the malignant potential of sarcomas. PMID:20576167

  15. LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs

    PubMed Central

    Seppälä, Eija H.; Jokinen, Tarja S.; Fukata, Masaki; Fukata, Yuko; Webster, Matthew T.; Karlsson, Elinor K.; Kilpinen, Sami K.; Steffen, Frank; Dietschi, Elisabeth; Leeb, Tosso; Eklund, Ranja; Zhao, Xiaochu; Rilstone, Jennifer J.; Lindblad-Toh, Kerstin; Minassian, Berge A.; Lohi, Hannes

    2011-01-01

    One quadrillion synapses are laid in the first two years of postnatal construction of the human brain, which are then pruned until age 10 to 500 trillion synapses composing the final network. Genetic epilepsies are the most common neurological diseases with onset during pruning, affecting 0.5% of 2–10-year-old children, and these epilepsies are often characterized by spontaneous remission. We previously described a remitting epilepsy in the Lagotto romagnolo canine breed. Here, we identify the gene defect and affected neurochemical pathway. We reconstructed a large Lagotto pedigree of around 34 affected animals. Using genome-wide association in 11 discordant sib-pairs from this pedigree, we mapped the disease locus to a 1.7 Mb region of homozygosity in chromosome 3 where we identified a protein-truncating mutation in the Lgi2 gene, a homologue of the human epilepsy gene LGI1. We show that LGI2, like LGI1, is neuronally secreted and acts on metalloproteinase-lacking members of the ADAM family of neuronal receptors, which function in synapse remodeling, and that LGI2 truncation, like LGI1 truncations, prevents secretion and ADAM interaction. The resulting epilepsy onsets at around seven weeks (equivalent to human two years), and remits by four months (human eight years), versus onset after age eight in the majority of human patients with LGI1 mutations. Finally, we show that Lgi2 is expressed highly in the immediate post-natal period until halfway through pruning, unlike Lgi1, which is expressed in the latter part of pruning and beyond. LGI2 acts at least in part through the same ADAM receptors as LGI1, but earlier, ensuring electrical stability (absence of epilepsy) during pruning years, preceding this same function performed by LGI1 in later years. LGI2 should be considered a candidate gene for common remitting childhood epilepsies, and LGI2-to-LGI1 transition for mechanisms of childhood epilepsy remission. PMID:21829378

  16. Universal microscopic correlation functions for products of truncated unitary matrices

    NASA Astrophysics Data System (ADS)

    Akemann, Gernot; Burda, Zdzislaw; Kieburg, Mario; Nagao, Taro

    2014-06-01

    We investigate the spectral properties of the product of M complex non-Hermitian random matrices that are obtained by removing L rows and columns of larger unitary random matrices uniformly distributed on the group U(N + L). Such matrices are called truncated unitary matrices or random contractions. We first derive the joint probability distribution for the complex eigenvalues of the product matrix for fixed N, L, and M, given by a standard determinantal point process in the complex plane. The weight however is non-standard and can be expressed in terms of the Meijer G-function. The explicit knowledge of all eigenvalue correlation functions and the corresponding kernel allows us to take various large N (and L) limits at fixed M. At strong non-unitarity, with L/N finite, the eigenvalues condense on a domain inside the unit circle. At the edge and in the bulk we find the same universal microscopic kernel as for a single complex non-Hermitian matrix from the Ginibre ensemble. At the origin we find the same new universality classes labeled by M as for the product of M matrices from the Ginibre ensemble. Keeping a fixed size of truncation, L, when N goes to infinity leads to weak non-unitarity, with most eigenvalues on the unit circle as for unitary matrices. Here we find a new microscopic edge kernel that generalizes the known results for M = 1. We briefly comment on the case when each product matrix results from a truncation of different size Lj.

  17. Prevalence of Titin Truncating Variants in General Population

    PubMed Central

    Akinrinade, Oyediran; Koskenvuo, Juha W.; Alastalo, Tero-Pekka

    2015-01-01

    Background Truncating titin (TTN) mutations, especially in A-band region, represent the most common cause of dilated cardiomyopathy (DCM). Clinical interpretation of these variants can be challenging, as these variants are also present in reference populations. We carried out systematic analyses of TTN truncating variants (TTNtv) in publicly available reference populations, including, for the first time, data from Exome Aggregation Consortium (ExAC). The goal was to establish more accurate estimate of prevalence of different TTNtv to allow better clinical interpretation of these findings. Methods and Results Using data from 1000 Genomes Project, Exome Sequencing Project (ESP) and ExAC, we estimated the prevalence of TTNtv in the population. In the three population datasets, 52–54% of TTNtv were not affecting all TTN transcripts. The frequency of truncations affecting all transcripts in ExAC was 0.36% (0.32% - 0.41%, 95% CI) and 0.19% (0.16% - 0.23%, 95% CI) for those affecting the A-band. In the A-band region, the prevalences of frameshift, nonsense and essential splice site variants were 0.057%, 0.090%, and 0.047% respectively. Cga/Tga (arginine/nonsense–R/*) transitional change at CpG mutation hotspots was the most frequent type of TTN nonsense mutation accounting for 91.3% (21/23) of arginine residue nonsense mutation (R/*) at TTN A-band region. Non-essential splice-site variants had significantly lower proportion of private variants and higher proportion of low-frequency variants compared to essential splice-site variants (P = 0.01; P = 5.1 X 10−4, respectively). Conclusion A-band TTNtv are more rare in the general population than previously reported. Based on this analysis, one in 500 carries a truncation in TTN A-band suggesting the penetrance of these potentially harmful variants is still poorly understood, and some of these variants do not manifest as autosomal dominant DCM. This calls for caution when interpreting TTNtv in individuals and families

  18. Mistargeting hippocampal axons by expression of a truncated Eph receptor

    PubMed Central

    Yue, Yong; Chen, Zhi-Yong; Gale, Nick W.; Blair-Flynn, Jan; Hu, Tian-Jing; Yue, Xin; Cooper, Margaret; Crockett, David P.; Yancopoulos, George D.; Tessarollo, Lino; Zhou, Renping

    2002-01-01

    Topographic mapping of axon terminals is a general principle of neural architecture that underlies the interconnections among many neural structures. The Eph family tyrosine kinase receptors and their ligands, the ephrins, have been implicated in the formation of topographic projection maps. We show that multiple Eph receptors and ligands are expressed in the hippocampus and its major subcortical projection target, the lateral septum, and that expression of a truncated Eph receptor in the mouse brain results in a pronounced alteration of the hippocamposeptal topographic map. Our observations provide strong support for a critical role of Eph family guidance factors in regulating ontogeny of hippocampal projections. PMID:12124402

  19. Equalization of loudspeaker response using balanced model truncation.

    PubMed

    Li, Xiansheng; Cai, Zhibo; Zheng, Chengshi; Li, Xiaodong

    2015-04-01

    Traditional loudspeaker equalization algorithms cannot decide the order of an equalizer before the whole equalization procedure has been completed. Designers have to try many times before they determine a proper order of the equalization filter. A method which solves this drawback is presented for loudspeaker equalization using balanced model truncation. The order of the equalizer can be easily decided using this algorithm and the error between the model and the loudspeaker can also be readily controlled. Examples are presented and the performance of the proposed method is discussed with comparative experiments. PMID:25920872

  20. Quark propagator in a truncation scheme beyond the rainbow approximation

    NASA Astrophysics Data System (ADS)

    Fu, Hui-Feng; Wang, Qing

    2016-01-01

    The quark propagator is studied under a truncation scheme beyond the rainbow approximation by dressing the quark-gluon vertex nonperturbatively. It is found that, in the chiral limit with dynamical symmetry breaking, the dynamical quark mass and the quark condensate are significantly enhanced due to the non-Abelian contribution arising from the three-gluon interaction compared to those under the rainbow approximation, and the critical strength of the dynamical chiral symmetry breaking is much lowered. The Abelian contribution is much smaller than the non-Abelian contribution. A technical issue on removing the ultraviolet divergences, including the overlapping divergences, is discussed.

  1. Simulating Hamiltonian dynamics with a truncated Taylor series.

    PubMed

    Berry, Dominic W; Childs, Andrew M; Cleve, Richard; Kothari, Robin; Somma, Rolando D

    2015-03-01

    We describe a simple, efficient method for simulating Hamiltonian dynamics on a quantum computer by approximating the truncated Taylor series of the evolution operator. Our method can simulate the time evolution of a wide variety of physical systems. As in another recent algorithm, the cost of our method depends only logarithmically on the inverse of the desired precision, which is optimal. However, we simplify the algorithm and its analysis by using a method for implementing linear combinations of unitary operations together with a robust form of oblivious amplitude amplification. PMID:25793789

  2. Relevance of truncating titin mutations in dilated cardiomyopathy.

    PubMed

    Akinrinade, O; Alastalo, T-P; Koskenvuo, J W

    2016-07-01

    Dilated cardiomyopathy (DCM), a genetically heterogeneous cardiac disease characterized by left ventricular dilatation and systolic dysfunction, is caused majorly by truncations of titin (TTN), especially in A-band region. Clinical interpretation of TTN-truncating variants (TTNtv) has been challenged by the existing inaccurate variant assessment strategies and uncertainty in the true frequency of TTNtv across the general population. We aggregated TTNtv identified in 1788 DCM patients and compared the variants with those reported in over 60,000 Exome Aggregation Consortium reference population. We implemented our current variant assessment strategy that prioritizes TTNtv affecting all transcripts of the gene, and observed a decline in the prevalence of TTNtv in DCM. Despite this decline, TTNtv are more prevalent in DCM patients compared with reference population (p = 4.1 × 10(-295) ). Moreover, our extended analyses confirmed the enrichment of TTNtv not only in the A-band but also in the I/A-band junction of TTN. We estimated the probability of pathogenicity of TTNtv affecting all transcripts of TTN, identified in unselected DCM patients to be 97.8% (likelihood ratio (LR) = 42.2). We emphasize that identifying a TTNtv, especially in the A-band region, has a higher risk of being disease-causing than previously anticipated, and recommend prioritizing TTNtv affecting at least five transcripts of the gene. PMID:26777568

  3. Excess of rare, inherited truncating mutations in autism

    PubMed Central

    Krumm, Niklas; Turner, Tychele N.; Baker, Carl; Vives, Laura; Mohajeri, Kiana; Witherspoon, Kali; Raja, Archana; Coe, Bradley P.; Stessman, Holly A.; He, Zong-Xiao; Leal, Suzanne M.; Bernier, Raphael; Eichler, Evan E.

    2015-01-01

    To assess the relative impact of inherited and de novo variants on autism risk, we generated a comprehensive set of exonic single nucleotide variants (SNVs) and copy number variants (CNVs) from 2,377 autism families. We find that private, inherited truncating SNVs in conserved genes are enriched in probands (odds ratio=1.14, p=0.0002) compared to unaffected siblings, an effect with significant maternal transmission bias to sons. We also observe a bias for inherited CNVs, specifically for small (<100 kbp), maternally inherited events (p=0.01) that are enriched in CHD8 target genes (p=7.4×10−3). Using a logistic regression model, we show that private truncating SNVs and rare, inherited CNVs are statistically independent autism risk factors, with odds ratios of 1.11 (p=0.0002) and 1.23 (p=0.01), respectively. This analysis identifies a second class of candidate genes (e.g., RIMS1, CUL7, and LZTR1) where transmitted mutations may create a sensitized background but are unlikely to be completely penetrant. PMID:25961944

  4. Projection-free approximate balanced truncation of large unstable systems

    NASA Astrophysics Data System (ADS)

    Flinois, Thibault L. B.; Morgans, Aimee S.; Schmid, Peter J.

    2015-08-01

    In this article, we show that the projection-free, snapshot-based, balanced truncation method can be applied directly to unstable systems. We prove that even for unstable systems, the unmodified balanced proper orthogonal decomposition algorithm theoretically yields a converged transformation that balances the Gramians (including the unstable subspace). We then apply the method to a spatially developing unstable system and show that it results in reduced-order models of similar quality to the ones obtained with existing methods. Due to the unbounded growth of unstable modes, a practical restriction on the final impulse response simulation time appears, which can be adjusted depending on the desired order of the reduced-order model. Recommendations are given to further reduce the cost of the method if the system is large and to improve the performance of the method if it does not yield acceptable results in its unmodified form. Finally, the method is applied to the linearized flow around a cylinder at Re = 100 to show that it actually is able to accurately reproduce impulse responses for more realistic unstable large-scale systems in practice. The well-established approximate balanced truncation numerical framework therefore can be safely applied to unstable systems without any modifications. Additionally, balanced reduced-order models can readily be obtained even for large systems, where the computational cost of existing methods is prohibitive.

  5. A conformal truncation framework for infinite-volume dynamics

    NASA Astrophysics Data System (ADS)

    Katz, Emanuel; Khandker, Zuhair U.; Walters, Matthew T.

    2016-07-01

    We present a new framework for studying conformal field theories deformed by one or more relevant operators. The original CFT is described in infinite volume using a basis of states with definite momentum, P , and conformal Casimir, C. The relevant deformation is then considered using lightcone quantization, with the resulting Hamiltonian expressed in terms of this CFT basis. Truncating to states with C ≤ C_{max } , one can numerically find the resulting spectrum, as well as other dynamical quantities, such as spectral densities of operators. This method requires the introduction of an appropriate regulator, which can be chosen to preserve the conformal structure of the basis. We check this framework in three dimensions for various perturbative deformations of a free scalar CFT, and for the case of a free O( N ) CFT deformed by a mass term and a non-perturbative quartic interaction at large- N . In all cases, the truncation scheme correctly reproduces known analytic results. We also discuss a general procedure for generating a basis of Casimir eigenstates for a free CFT in any number of dimensions.

  6. Simulating Hamiltonian Dynamics with a Truncated Taylor Series

    NASA Astrophysics Data System (ADS)

    Somma, Rolando

    2015-03-01

    One of the main motivations for quantum computers is their ability to efficiently simulate the dynamics of quantum systems. Since the mid-1990s, many algorithms have been developed to simulate Hamiltonian dynamics on a quantum computer, with applications to problems such as simulating spin models and quantum chemistry. While it is now well known that quantum computers can efficiently simulate Hamiltonian dynamics, ongoing work has improved the performance and expanded the scope of such simulations. In this talk, I will describe a very simple and efficient algorithm for simulating Hamiltonian dynamics on a quantum computer by approximating the truncated Taylor series of the evolution operator. This algorithm can simulate the time evolution of a wide variety of physical systems. The cost of this algorithm depends only logarithmically on the inverse of the desired precision, and can be shown to be optimal. Such a cost also represents an exponential improvement over known methods for Hamiltonian simulation based on, e.g., Trotter-Suzuki approximations. Roughly speaking, doubling the number of digits of accuracy of the simulation only doubles the complexity. The new algorithm and its analysis are highly simplified due to a technique for implementing linear combinations of unitary operations to directly apply the truncated Taylor series. This is joint work with Dominic Berry, Andrew Childs, Richard Cleve, and Robin Kothari.

  7. Block That Pain!

    MedlinePlus

    ... combination produces a unique effect, blocking pain-sensing neurons without impairing signals from other cells. In contrast, ... surgical procedures block activity in all types of neurons. This can cause numbness, paralysis, and other nervous ...

  8. Adaptive EAGLE dynamic solution adaptation and grid quality enhancement

    NASA Technical Reports Server (NTRS)

    Luong, Phu Vinh; Thompson, J. F.; Gatlin, B.; Mastin, C. W.; Kim, H. J.

    1992-01-01

    In the effort described here, the elliptic grid generation procedure in the EAGLE grid code was separated from the main code into a subroutine, and a new subroutine which evaluates several grid quality measures at each grid point was added. The elliptic grid routine can now be called, either by a computational fluid dynamics (CFD) code to generate a new adaptive grid based on flow variables and quality measures through multiple adaptation, or by the EAGLE main code to generate a grid based on quality measure variables through static adaptation. Arrays of flow variables can be read into the EAGLE grid code for use in static adaptation as well. These major changes in the EAGLE adaptive grid system make it easier to convert any CFD code that operates on a block-structured grid (or single-block grid) into a multiple adaptive code.

  9. The Block Scheduling Handbook.

    ERIC Educational Resources Information Center

    Queen, J. Allen

    Block scheduling encourages increased comprehensive immersion into subject matter, improved teacher-student relationships, and decreased disciplinary problems. While block scheduling may offer many advantages, moving to a block schedule from conventional scheduling can be a major adjustment for both students and teachers. This guide is intended to…

  10. Block Scheduling. Research Brief

    ERIC Educational Resources Information Center

    Muir, Mike

    2003-01-01

    What are the effects of block scheduling? Results of transitioning from traditional to block scheduling are mixed. Some studies indicate no change in achievement results, nor change in teachers' opinions about instructional strategies. Other studies show that block scheduling doesn't work well for Advanced Placement or Music courses, that "hard to…

  11. Defying Gravity Using Jenga[TM] Blocks

    ERIC Educational Resources Information Center

    Tan, Yin-Soo; Yap, Kueh-Chin

    2007-01-01

    This paper describes how Jenga[TM] blocks can be used to demonstrate the physics of an overhanging tower that appears to defy gravity. We also propose ideas for how this demonstration can be adapted for the A-level physics curriculum. (Contains 8 figures and 1 table.)

  12. Properties of permuted-block randomization in clinical trials.

    PubMed

    Matts, J P; Lachin, J M

    1988-12-01

    selection bias only when the investigator is able to discern the next assignment with certainty. This type of bias is reduced by the use of random block sizes and is eliminated only if the possible block sizes are unknown to the investigators. Finally, the Efron model for accidental bias is used to assess the potential for bias in the estimation of treatment effects due to covariate imbalances. For the permuted-block design, the variance of this bias approaches that of complete randomization as the half-block length m----infinity.(ABSTRACT TRUNCATED AT 400 WORDS) PMID:3203524

  13. Blocking Delaunay triangulations

    PubMed Central

    Aichholzer, Oswin; Fabila-Monroy, Ruy; Hackl, Thomas; van Kreveld, Marc; Pilz, Alexander; Ramos, Pedro; Vogtenhuber, Birgit

    2013-01-01

    Given a set B of n black points in general position, we say that a set of white points W blocks B if in the Delaunay triangulation of B∪W there is no edge connecting two black points. We give the following bounds for the size of the smallest set W blocking B: (i) 3n/2 white points are always sufficient to block a set of n black points, (ii) if B is in convex position, 5n/4 white points are always sufficient to block it, and (iii) at least n−1 white points are always necessary to block a set of n black points. PMID:23483043

  14. Blocking Delaunay triangulations.

    PubMed

    Aichholzer, Oswin; Fabila-Monroy, Ruy; Hackl, Thomas; van Kreveld, Marc; Pilz, Alexander; Ramos, Pedro; Vogtenhuber, Birgit

    2013-02-01

    Given a set B of n black points in general position, we say that a set of white points W blocks B if in the Delaunay triangulation of [Formula: see text] there is no edge connecting two black points. We give the following bounds for the size of the smallest set W blocking B: (i) [Formula: see text] white points are always sufficient to block a set of n black points, (ii) if B is in convex position, [Formula: see text] white points are always sufficient to block it, and (iii) at least [Formula: see text] white points are always necessary to block a set of n black points. PMID:23483043

  15. Adaptive Mesh Refinement in CTH

    SciTech Connect

    Crawford, David

    1999-05-04

    This paper reports progress on implementing a new capability of adaptive mesh refinement into the Eulerian multimaterial shock- physics code CTH. The adaptivity is block-based with refinement and unrefinement occurring in an isotropic 2:1 manner. The code is designed to run on serial, multiprocessor and massive parallel platforms. An approximate factor of three in memory and performance improvements over comparable resolution non-adaptive calculations has-been demonstrated for a number of problems.

  16. Block LU factorization

    NASA Technical Reports Server (NTRS)

    Demmel, James W.; Higham, Nicholas J.; Schreiber, Robert S.

    1992-01-01

    Many of the currently popular 'block algorithms' are scalar algorithms in which the operations have been grouped and reordered into matrix operations. One genuine block algorithm in practical use is block LU factorization, and this has recently been shown by Demmel and Higham to be unstable in general. It is shown here that block LU factorization is stable if A is block diagonally dominant by columns. Moreover, for a general matrix the level of instability in block LU factorization can be founded in terms of the condition number kappa(A) and the growth factor for Gaussian elimination without pivoting. A consequence is that block LU factorization is stable for a matrix A that is symmetric positive definite or point diagonally dominant by rows or columns as long as A is well-conditioned.

  17. Remanent state studies of truncated conical magnetic particles

    SciTech Connect

    Hwang, M.; Redjdal, M.; Humphrey, F. B.; Ross, C. A.

    2001-06-01

    The remanent state of truncated conical particles is investigated as a function of their size, aspect ratio, and anisotropy, using a micromagnetic model based on the Landau{endash}Lifshitz{endash}Gilbert equation. Particles with a base diameter smaller than three times the exchange length show a {open_quotes}flower{close_quotes} state, while larger particles show a {open_quotes}vortex{close_quotes} magnetization state. The critical size for this transition increases with increasing anisotropy. Small flower-state particles show abrupt reorientation from out-of-plane to in-plane magnetization at a critical aspect ratio of 0.9. For vortex-state particles, the axial remanence gradually increases as the aspect ratio increases, and high aspect ratio particles have significant remanence even at larger diameters. {copyright} 2001 American Institute of Physics.

  18. Truncated-correlation photothermal coherence tomography for deep subsurface analysis

    NASA Astrophysics Data System (ADS)

    Kaiplavil, Sreekumar; Mandelis, Andreas

    2014-08-01

    Photothermal diffusion-wave imaging is a promising technique for the analysis of a range of media. However, traditional diffusion-wave techniques are limited by the physics of parabolic diffusion and can only produce depth-integrated planar images. Here, we report a depth-resolved photothermal imaging modality, henceforth termed truncated-correlation photothermal coherence tomography (TC-PCT). This enables three-dimensional visualization of subsurface features, which is not possible with known optical or photothermal imaging techniques. Examples include imaging of solids with intricate subsurface structures and discontinuities, such as holes in steel, burn depth profiles in tissues, and the structure of bone. It is compatible with regulations concerning maximum permissible exposure and is the photothermal analogue of optical coherence tomography. Axial and lateral resolutions in bone are measured to be ~25 and 100 µm, respectively, with a depth range of ~3.2 mm (approximately four thermal diffusion lengths).

  19. Truncated CASK does not alter skeletal muscle or protein interactors.

    PubMed

    Sanford, Jamie L; Mays, Tessily A; Varian, Kenneth D; Wilson, Joanna B; Janssen, Paul M L; Rafael-Fortney, Jill A

    2008-09-01

    CASK (Ca2+, calmodulin-associated serine/threonine kinase) is an essential mammalian cell junction protein and is also crucial at Drosophila neuromuscular synapses. We have shown that CASK is present in mammalian skeletal muscle at the postsynaptic membrane of the neuromuscular junction. CASK interacts biochemically with channels at central synapses, and studies in cultured cells have led to proposed functions for CASK. However, in vivo functions of CASK in skeletal muscle remain unknown. To test hypotheses of CASK functions, we generated two lines of transgenic mice, which overexpress full-length and truncated CASK protein in skeletal muscle. Extensive analyses showed that overexpression of CASK protein did not affect the morphology or physiology of skeletal muscle, the morphology of the neuromuscular junction, or the levels or distribution of protein interactors. These results contrast with previous cell culture experiments and emphasize the importance of in vivo analysis of protein function. PMID:18642383

  20. Simulating strongly correlated multiparticle systems in a truncated Hilbert space

    SciTech Connect

    Ernst, Thomas; Hallwood, David W.; Gulliksen, Jake; Brand, Joachim; Meyer, Hans-Dieter

    2011-08-15

    Representing a strongly interacting multiparticle wave function in a finite product basis leads to errors. Simple rescaling of the contact interaction can preserve the low-lying energy spectrum and long-wavelength structure of wave functions in one-dimensional systems and thus correct for the basis set truncation error. The analytic form of the rescaling is found for a two-particle system where the rescaling is exact. A detailed comparison between finite Hilbert space calculations and exact results for up to five particles show that rescaling can significantly improve the accuracy of numerical calculations in various external potentials. In addition to ground-state energies, the low-lying excitation spectrum, density profile, and correlation functions are studied. The results give a promising outlook for numerical simulations of trapped ultracold atoms.

  1. Exact Interior Reconstruction from Truncated Limited-Angle Projection Data

    PubMed Central

    Ye, Yangbo; Yu, Hengyong; Wang, Ge

    2008-01-01

    Using filtered backprojection (FBP) and an analytic continuation approach, we prove that exact interior reconstruction is possible and unique from truncated limited-angle projection data, if we assume a prior knowledge on a subregion or subvolume within an object to be reconstructed. Our results show that (i) the interior region-of-interest (ROI) problem and interior volume-of-interest (VOI) problem can be exactly reconstructed from a limited-angle scan of the ROI/VOI and a 180 degree PI-scan of the subregion or subvolume and (ii) the whole object function can be exactly reconstructed from nontruncated projections from a limited-angle scan. These results improve the classical theory of Hamaker et al. (1980). PMID:18490957

  2. Pair truncation for rotational nuclei: j=(17/2 model

    NASA Astrophysics Data System (ADS)

    Halse, P.; Jaqua, L.; Barrett, B. R.

    1989-08-01

    The suitability of the pair condensate approach for rotational states is studied in a single j=(17/2 shell of identical nucleons interacting through a quadrupole-quadrupole Hamiltonian. The ground band and a K=2 excited band are both studied in detail. A direct comparison of the exact states with those constituting the SD and SDG subspaces is used to identify the important degrees of freedom for these levels. The range of pairs necessary for a good description is found to be highly state dependent; S and D pairs are the major constituents of the low-spin ground-band levels, while G pairs are needed for those in the γ band. Energy spectra are obtained for each truncated subspace. SDG pairs allow accurate reproduction of the binding energy and K=2 excitation energy, but still give a moment of inertia which is about 30% too small even for the lowest levels.

  3. Modified Truncated Cone Target Hyperthermal Atomic Oxygen Test Results

    NASA Technical Reports Server (NTRS)

    Vaughn, J. A.; Kamenetsky, R. R.; Finckenor, M. M.

    1999-01-01

    The modified truncated cone target is a docking target planned for use on the International Space Station. The current design consists of aluminum treated with a black dye anodize, then crosshairs are laser etched for a silvery color. Samples of the treated aluminum were exposed to laboratory simulation of atomic oxygen and ultraviolet radiation to determine if significant degradation might occur. Durability was evaluated based on the contrast ratio between the black and silvery white areas of the target. Degradation of optical properties appeared to level off after an initial period of exposure to atomic oxygen. The sample that was not alodined according to MIL-C-5541, type 1A, performed better than alodined samples.

  4. Characterization of a Truncated Lipoarabinomannan from the Actinomycete Turicella otitidis

    PubMed Central

    Gilleron, Martine; Garton, Natalie J.; Nigou, Jérôme; Brando, Thérèse; Puzo, Germain; Sutcliffe, Iain C.

    2005-01-01

    Lipoarabinomannan (LAM) lipoglycans have been characterized from a range of mycolic acid-containing actinomycetes and from the amycolate actinomycete Amycolatopsis sulphurea. To further understand the structural diversity of this family, we have characterized the lipoglycan of the otic commensal Turicella otitidis. T. otitidis LAM (TotLAM) has been determined to consist of a mannosyl phosphatidylinositol anchor unit carrying an (α 1→6)-linked mannan core and substituted with terminal-arabinosyl branches. Thus, TotLAM has a novel truncated LAM structure. Using the human monocytic THP-1 cell line, it was found that TotLAM exhibited only minimal ability to induce tumor necrosis factor alpha. These findings contribute further to our understanding of actinomycete LAM diversity and allow further speculation as to the correlation between LAM structure and the immunomodulatory activities of these lipoglycans. PMID:15659663

  5. Administering truncated receive functions in a parallel messaging interface

    SciTech Connect

    Archer, Charles J; Blocksome, Michael A; Ratterman, Joseph D; Smith, Brian E

    2014-12-09

    Administering truncated receive functions in a parallel messaging interface (`PMI`) of a parallel computer comprising a plurality of compute nodes coupled for data communications through the PMI and through a data communications network, including: sending, through the PMI on a source compute node, a quantity of data from the source compute node to a destination compute node; specifying, by an application on the destination compute node, a portion of the quantity of data to be received by the application on the destination compute node and a portion of the quantity of data to be discarded; receiving, by the PMI on the destination compute node, all of the quantity of data; providing, by the PMI on the destination compute node to the application on the destination compute node, only the portion of the quantity of data to be received by the application; and discarding, by the PMI on the destination compute node, the portion of the quantity of data to be discarded.

  6. Growth of pentatwinned gold nanorods into truncated decahedra.

    PubMed

    Carbó-Argibay, Enrique; Rodríguez-González, Benito; Pastoriza-Santos, Isabel; Pérez-Juste, Jorge; Liz-Marzán, Luis M

    2010-11-01

    The growth mechanism from pentatwinned (PTW) gold nanorods into truncated quasi-decahedral particles when a gold salt (HAuCl₄) is reduced by N, N-dimethylformamide (DMF) in the presence of poly(vinylpyrrolidone), was elucidated through a combination of different techniques, including transmission and scanning electron microscopy, high resolution TEM and selected area electron diffraction. Particles with intermediate shapes between the original pentatwinned Au nanorods, used as seeds, and the final quasi-decahedral particles were obtained by simply tuning the [HAuCl₄] to [seeds] ratio. From the thorough structural analysis of all the intermediate morphologies obtained, it was concluded that gradual morphology changes are related to the preferential growth of higher energy crystallographic facets. As a result of the particle growth and concomitant decreased anisotropy, a progressive blue-shift of the surface plasmon resonance bands of the nanoparticles was registered by vis-NIR extinction spectroscopy. PMID:20714650

  7. PHOTOEVAPORATION AS A TRUNCATION MECHANISM FOR CIRCUMPLANETARY DISKS

    SciTech Connect

    Mitchell, Tyler R.; Stewart, Glen R.

    2011-11-15

    We investigate the conditions under which the regular satellites of Jupiter and Saturn formed. The final stage of giant planet accretion is thought to occur slowly over a relatively long, 10 Myr, timescale. Gas accretion during this stage, through a completely or partially opened gap in the solar nebula, occurs slowly, allowing for the condensation of ices and incomplete differentiation seen in the regular satellites of the giant planets. Furthermore, the dichotomy seen in the Jovian and Saturnian systems may be explained as this infall wanes or is completely shutoff as a result of gaps opening or global depletion of gas in the solar nebula. We present one-dimensional simulations of circumplanetary disks that couple the viscous transport of material with the loss of mass at the disk outer edge by ultraviolet photoevaporation as well as the infall of material from the solar nebula. We find that the circumplanetary disks of these protoplanets are truncated as a result of photoevaporation at a range of values with the mean corresponding to Almost-Equal-To 0.16 Hill radii. These truncation radii are broadly consistent with the current locations of the regular satellite systems of Jupiter and Saturn. We also find that photoevaporation can successfully act as a clearing mechanism for circumplanetary nebulae on the potentially short timescales, 10{sup 2}-10{sup 4} yr, over which mass accretion from the solar nebula wanes as a result of a gap opening. Such a rapid clearing of the circum-Jovian disk may be required to explain the survival of the Galilean satellites.

  8. Growth of pentatwinned gold nanorods into truncated decahedra

    NASA Astrophysics Data System (ADS)

    Carbó-Argibay, Enrique; Rodríguez-González, Benito; Pastoriza-Santos, Isabel; Pérez-Juste, Jorge; Liz-Marzán, Luis M.

    2010-11-01

    The growth mechanism from pentatwinned (PTW) gold nanorods into truncated quasi-decahedral particles when a gold salt (HAuCl4) is reduced by N,N-dimethylformamide (DMF) in the presence of poly(vinylpyrrolidone), was elucidated through a combination of different techniques, including transmission and scanning electron microscopy, high resolution TEM and selected area electron diffraction. Particles with intermediate shapes between the original pentatwinned Au nanorods, used as seeds, and the final quasi-decahedral particles were obtained by simply tuning the [HAuCl4] to [seeds] ratio. From the thorough structural analysis of all the intermediate morphologies obtained, it was concluded that gradual morphology changes are related to the preferential growth of higher energy crystallographic facets. As a result of the particle growth and concomitant decreased anisotropy, a progressive blue-shift of the surface plasmon resonance bands of the nanoparticles was registered by vis-NIR extinction spectroscopy.The growth mechanism from pentatwinned (PTW) gold nanorods into truncated quasi-decahedral particles when a gold salt (HAuCl4) is reduced by N,N-dimethylformamide (DMF) in the presence of poly(vinylpyrrolidone), was elucidated through a combination of different techniques, including transmission and scanning electron microscopy, high resolution TEM and selected area electron diffraction. Particles with intermediate shapes between the original pentatwinned Au nanorods, used as seeds, and the final quasi-decahedral particles were obtained by simply tuning the [HAuCl4] to [seeds] ratio. From the thorough structural analysis of all the intermediate morphologies obtained, it was concluded that gradual morphology changes are related to the preferential growth of higher energy crystallographic facets. As a result of the particle growth and concomitant decreased anisotropy, a progressive blue-shift of the surface plasmon resonance bands of the nanoparticles was registered by vis

  9. Blocked randomization with randomly selected block sizes.

    PubMed

    Efird, Jimmy

    2011-01-01

    When planning a randomized clinical trial, careful consideration must be given to how participants are selected for various arms of a study. Selection and accidental bias may occur when participants are not assigned to study groups with equal probability. A simple random allocation scheme is a process by which each participant has equal likelihood of being assigned to treatment versus referent groups. However, by chance an unequal number of individuals may be assigned to each arm of the study and thus decrease the power to detect statistically significant differences between groups. Block randomization is a commonly used technique in clinical trial design to reduce bias and achieve balance in the allocation of participants to treatment arms, especially when the sample size is small. This method increases the probability that each arm will contain an equal number of individuals by sequencing participant assignments by block. Yet still, the allocation process may be predictable, for example, when the investigator is not blind and the block size is fixed. This paper provides an overview of blocked randomization and illustrates how to avoid selection bias by using random block sizes. PMID:21318011

  10. A Truncated Variant of ASCC1, a Novel Inhibitor of NF-κB, Is Associated with Disease Severity in Patients with Rheumatoid Arthritis.

    PubMed

    Torices, Silvia; Alvarez-Rodríguez, Lorena; Grande, Lara; Varela, Ignacio; Muñoz, Pedro; Pascual, Dora; Balsa, Alejandro; López-Hoyos, Marcos; Martinez-Taboada, Víctor; Fernández-Luna, Jose L

    2015-12-01

    Loss of the regulatory mechanisms that avoid excessive or constitutive activation of NF-κB may be associated with chronic inflammatory disorders, including rheumatoid arthritis (RA). After massive sequencing of 158 regulators of the NF-κB pathway in RA patients, we focused on a scarcely known gene, ASCC1, and showed that it potently inhibits the expression of NF-κB target genes (TRAIL, TNF-α, cIAP-1, IL8) and blocks activation of a NF-κB-luciferase reporter construct in five different human cell lines. Therefore, ASCC1 may contribute to avoiding a pathologic activation of this transcription factor. A truncated variant of ASCC1 (p.S78*) was found in RA patients and control individuals. Functional in vitro studies revealed that truncation abrogated the NF-κB inhibition capacity of ASCC1. In contrast with full-length protein, truncated ASCC1 did not reduce the transcriptional activation of NF-κB and the secretion of TNF-α in response to inflammatory stimuli. We analyzed the clinical impact of p.S78* variant in 433 patients with RA and found that heterozygous carriers of this variant needed more disease-modifying antirheumatic drugs, and more patients with this genotype needed treatment with corticoids and biologic agents. Moreover, the truncated allele-carrier group had lower rates of remission compared with the full-length variant carriers. Overall, our findings show for the first time, to our knowledge, that ASCC1 inhibits NF-κB activation and that a truncated and inactive variant of ASCC1 is associated with a more severe disease, which could have clinical value for assessing the progression and prognosis of RA. PMID:26503956

  11. Propagation of time-truncated Airy-type pulses in media with quadratic and cubic dispersion.

    PubMed

    Borda-Hernández, José A; Zamboni-Rached, Michel; Shaarawi, Amr; Besieris, Ioannis M

    2015-10-01

    In this paper, we describe analytically the propagation of Airy-type pulses truncated by a finite-time aperture when second- and third-order dispersion effects are considered. The mathematical method presented here, which is based on the superposition of exponentially truncated Airy pulses, is very effective and allows us to avoid the use of time-consuming numerical simulations. We analyze the behavior of the time-truncated ideal Airy pulse and also the interesting case of a time-truncated Airy pulse with a "defect" in its initial profile, which reveals the self-healing property of this kind of pulse solution. PMID:26479932

  12. Reduction of truncation artifacts in CT images via a discriminative dictionary representation method

    NASA Astrophysics Data System (ADS)

    Chen, Yang; Li, Ke; Li, Yinsheng; Hsieh, Jiang; Chen, Guang-Hong

    2016-04-01

    When the scan field of view (SFOV) of a CT system is not large enough to enclose the entire cross-section of a patient, or the patient needs to be intentionally positioned partially outside the SFOV for certain clinical CT scans, truncation artifacts are often observed in the reconstructed CT images. Conventional wisdom to reduce truncation artifacts is to complete the truncated projection data via data extrapolation with different a priori assumptions. This paper presents a novel truncation artifact reduction method that directly works in the CT image domain. Specifically, a discriminative dictionary that includes a sub-dictionary of truncation artifacts and a sub-dictionary of non-artifact image information was used to separate a truncation artifact-contaminated image into two sub-images, one with reduced truncation artifacts, and the other one containing only the truncation artifacts. Both experimental phantom and retrospective human subject studies have been performed to characterize the performance of the proposed truncation artifact reduction method.

  13. Protein based Block Copolymers

    PubMed Central

    Rabotyagova, Olena S.; Cebe, Peggy; Kaplan, David L.

    2011-01-01

    Advances in genetic engineering have led to the synthesis of protein-based block copolymers with control of chemistry and molecular weight, resulting in unique physical and biological properties. The benefits from incorporating peptide blocks into copolymer designs arise from the fundamental properties of proteins to adopt ordered conformations and to undergo self-assembly, providing control over structure formation at various length scales when compared to conventional block copolymers. This review covers the synthesis, structure, assembly, properties, and applications of protein-based block copolymers. PMID:21235251

  14. Time-resolved cardiac interventional cone-beam CT reconstruction from fully truncated projections using the prior image constrained compressed sensing (PICCS) algorithm

    NASA Astrophysics Data System (ADS)

    Thériault Lauzier, Pascal; Tang, Jie; Chen, Guang-Hong

    2012-05-01

    C-arm cone-beam CT could replace preoperative multi-detector CT scans in the cardiac interventional setting. However, cardiac gating results in view angle undersampling and the small size of the detector results in projection data truncation. These problems are incompatible with conventional tomographic reconstruction algorithms. In this paper, the prior image constrained compressed sensing (PICCS) reconstruction method was adapted to solve these issues. The performance of the proposed method was compared to that of FDK, FDK with extrapolated projection data (E-FDK), and total variation-based compressed sensing. A canine projection dataset acquired using a clinical C-arm imaging system supplied realistic cardiac motion and anatomy for this evaluation. Three different levels of truncation were simulated. The relative root mean squared error and the universal image quality index were used to quantify the reconstruction accuracy. Three main conclusions were reached. (1) The adapted version of the PICCS algorithm offered the highest image quality and reconstruction accuracy. (2) No meaningful variation in performance was observed when the amount of truncation was changed. (3) This study showed evidence that accurate interior tomography with an undersampled acquisition is possible for realistic objects if a prior image with minimal artifacts is available.

  15. Truncated Thermal Equilibrium Distribution for Intense Beam Propagation

    SciTech Connect

    Ronald C. Davidson; Hong Qin; Steven M. Lund

    2003-02-26

    An intense charged-particle beam with directed kinetic energy ({lambda}{sub b}-1)m{sub b}c{sup 2} propagates in the z-direction through an applied focusing field with transverse focusing force modeled by F{sub foc} = -{lambda}{sub b}m{sub b}{omega}{sub beta}{sup 2} {perpendicular} x {perpendicular} in the smooth focusing approximation. This paper examines properties of the axisymmetric, truncated thermal equilibrium distribution F(sub)b(r,p perpendicular) = A exp (-H Perpendicular/T perpendicular (sub)b) = (H perpendicular-E(sub)b), where A, T perpendicular (sub)b, and E (sub)b are positive constants, and H perpendicular is the Hamiltonian for transverse particle motion. The equilibrium profiles for beam number density, n(sub)b(r) = * d{sup 2}pF(sub)b(r,p perpendicular), and transverse temperature, T perpendicular (sub)b(r) = * d{sup 2}p(p{sup 2} perpendicular/2 lambda (sbu)bm (sub)b)F(sub)b(r,p perpendicular), are calculated self-consistently including space-charge effects. Several properties of the equilibrium profiles are noteworthy. For example, the beam has a sharp outer edge radius r(sub)b with n(sub)b(r greater than or equal to rb) = 0, where r(sub)b depends on the value of E(sub)b/T (sub)perpendicular(sub)b. In addition, unlike the choice of a semi-Gaussian distribution, F{sup SG}(sub)b = A exp (-p{sup 2}(sub)perpendicular/2lambda(sub)bm(sub)bTperpendicular(sub)b) = (r-r(sub)b), the truncated thermal equilibrium distribution F(sub)b(r,p) depends on (r,p) only through the single-particle constant of the motion Hperpendiuclar and is therefore a true steady-state solution (*/*t = 0) of the nonlinear Vlasov-Maxwell equations.

  16. High Relief Block Printing.

    ERIC Educational Resources Information Center

    Foster, Michael

    1989-01-01

    Explains a method of block printing using styrofoam shapes to make high relief. Describes the creation of the block design as well as the actual printing process. Uses a range of paper types for printing so children can see the results of using different media. (LS)

  17. Surviving Block Scheduling.

    ERIC Educational Resources Information Center

    Haley, Marjorie

    A discussion of block scheduling for second language instruction looks at the advantages and disadvantages and offers some suggestions for classroom management and course organization. It is argued that block scheduling may offer a potential solution to large classes, insufficient time for labs, too little individualized instruction; few…

  18. Block Scheduling Revisited.

    ERIC Educational Resources Information Center

    Queen, J. Allen

    2000-01-01

    Successful block scheduling depends on provision of initial and ongoing instructional training. Teaching strategies should vary and include cooperative learning, the case method, the socratic seminar, synectics, concept attainment, the inquiry method, and simulations. Recommendations for maximizing block scheduling are outlined. (Contains 52…

  19. Thermally actuated wedge block

    DOEpatents

    Queen, Jr., Charles C.

    1980-01-01

    This invention relates to an automatically-operating wedge block for maintaining intimate structural contact over wide temperature ranges, including cryogenic use. The wedging action depends on the relative thermal expansion of two materials having very different coefficients of thermal expansion. The wedge block expands in thickness when cooled to cryogenic temperatures and contracts in thickness when returned to room temperature.

  20. Electrochemical studies of a truncated laccase produced in Pichia pastoris

    SciTech Connect

    Gelo-Pujic, M.; Kim, H.H.; Butlin, N.G.; Palmore, G.T.R.

    1999-12-01

    The cDNA that encodes an isoform is laccase from Trametes versicolor (LCCI), as well as a truncated version (LCCIa), was subcloned and expressed by using the yeast Pichia pastoris as the heterologous host. The amino acid sequence of LCCIa is identical to that of LCCI except that the final 11 amino acids at the C terminus of LCCI are replaced with a single cysteine residue. This modification was introduced for the purpose of improving the kinetics of electron transfer between an electrode and the copper-containing active site of laccase. The two laccases (LCCI and LCCIa) are compared in terms of their relative activity with two substrates that have different redox potentials. Results from electrochemical studies on solutions containing LCCI and LCCIa indicate that the redox potential of the active site of LCCIa is shifted to more negative values (411 mV versus normal hydrogen electrode voltage) than that found in other fungal laccases. In addition, replacing the 11 codons at the C terminus of the laccase gene with a single cysteine codon influences the rate of heterogeneous electron transfer between and electrode and the copper-containing active site. These results demonstrate for the first time that the rate of electron transfer between an oxidoreductase and an electrode can be enhanced by changes to the primary structure of a protein via site-directed mutagenesis.

  1. Transcriptional Truncation of the Long Coding Imprinted Gene Usp29

    PubMed Central

    He, Hongzhi; Ye, An; Kim, Joomyeong

    2016-01-01

    Usp29 (Ubiquitin-specific protease 29) is a paternally expressed gene located upstream of another imprinted gene Peg3. In the current study, the transcription of this long coding gene spanning a 250-kb genomic distance was truncated using a knockin allele. According to the results, paternal transmission of the mutant allele resulted in reduced body and litter sizes whereas the maternal transmission caused no obvious effects. In the paternal mutant, the expression levels of Usp29 were reduced to 14–18% level of the wild-type littermates due to the Poly-A signal included in the knockin cassette. Expression analyses further revealed an unusual female-specific up-regulation of the adjacent imprinted gene Zfp264 in the mutant. Consistent with this, the promoter of Zfp264 was hypomethylated only in the female mutant. Interestingly, this female-specific hypomethylation by the knockin allele was not detected in the offspring of an interspecific crossing, indicating its sensitivity to genetic background. Overall, the results suggest that the transcription of Usp29 may be involved in DNA methylation setting of Zfp264 promoter in a sex-specific manner. PMID:27327533

  2. Truncated γ-exponential models for tidal stellar systems

    NASA Astrophysics Data System (ADS)

    Gomez-Leyton, Y. J.; Velazquez, L.

    2016-05-01

    We introduce a parametric family of models to characterize the properties of astrophysical systems in a quasi-stationary evolution under the incidence evaporation. We start from an one-particle distribution fγ (q, p|β,ɛs) that considers an appropriate deformation of Maxwell-Boltzmann form with inverse temperature β, in particular, a power-law truncation at the scape energy ɛs with exponent γ > 0. This deformation is implemented using a generalized γ-exponential function obtained from the fractional integration of ordinary exponential. As shown in this work, this proposal generalizes models of tidal stellar systems that predict particles distributions with isothermal cores and polytropic haloes, e.g.: Michie-King models. We perform the analysis of thermodynamic features of these models and their associated distribution profiles. A nontrivial consequence of this study is that profiles with isothermal cores and polytropic haloes are only obtained for low energies whenever deformation parameter γ < γc ≃ 2.13. This study is a first approximation to characterize a self- gravitating system, so we consider equal to all the particles that constitute the system.

  3. Crystallization and Preliminary Diffraction Analysis of Truncated Human Pleckstrin

    SciTech Connect

    S Jackson; S Sugiman-Marangos; K Cheung; M Junop

    2011-12-31

    Pleckstrin is a major substrate of protein kinase C in platelets and leukocytes and appears to play an important role in exocytosis through a currently unknown mechanism. Pleckstrin function is regulated by phosphorylation, which is thought to cause dissociation of pleckstrin dimers, thereby facilitating phosphoinositide interactions and membrane localization. Evidence also exists suggesting that phosphorylation causes a subtle conformational change in pleckstrin. Structural studies of pleckstrin have been initiated in order to characterize these structural changes and ultimately advance understanding of pleckstrin function. Here, the crystallization and preliminary X-ray diffraction analysis of a truncated version of pleckstrin consisting of the N-terminal PH domain, the protein kinase C phosphorylation sites and the DEP domain (NPHDEP) are reported. In addition, the oligomeric state and phospholipid-binding properties of NPHDEP were analyzed. This work demonstrates that NPHDEP behaves as a monomer in solution and suggests that all three pleckstrin domains contribute to the dimerization interface. Furthermore, based on the binding properties of NPHDEP, the C-terminal PH domain appears to increase the specificity of pleckstrin for phosphoinositides. This work represents a significant step towards determining the structure of pleckstrin.

  4. Targeted radiosensitization of cells expressing truncated DNA polymerase {beta}.

    PubMed

    Neijenhuis, Sari; Verwijs-Janssen, Manon; van den Broek, Lenie J; Begg, Adrian C; Vens, Conchita

    2010-11-01

    Ionizing radiation (IR) is an effective anticancer treatment, although failures still occur. To improve radiotherapy, tumor-targeted strategies are needed to increase radiosensitivity of tumor cells, without influencing normal tissue radiosensitivity. Base excision repair (BER) and single-strand break repair (SSBR) contribute to the determination of sensitivity to IR. A crucial protein in BER/SSBR is DNA polymerase β (polβ). Aberrant polβ expression is commonly found in human tumors and leads to inhibition of BER. Here, we show that truncated polβ variant (polβ-Δ)-expressing cells depend on homologous recombination (HR) for survival after IR, indicating that a considerable fraction of polβ-Δ-induced lesions are subject to repair by HR. Increased sensitization was found not to result from involvement in DNA-dependent protein kinase-dependent nonhomologous end joining, the other major double-strand break repair pathway. Caffeine and the ATM inhibitor Ku55933 cause polβ-Δ-dependent radiosensitization. Consistent with the observed HR dependence and the known HR-modulating activity of ATM, polβ-Δ-expressing cells showed increased radiosensitization after BRCA2 knockdown that is absent under ATM-inhibited conditions. Our data suggest that treatment with HR modulators is a promising therapeutic strategy for exploiting defects in the BER/SSBR pathway in human tumors. PMID:20978197

  5. Estimation of Causal Effects Via Principal Stratification when Some Outcomes Are Truncated by "Death"

    ERIC Educational Resources Information Center

    Zhang, Junni L.; Rubin, Donald B.

    2003-01-01

    The topic of "truncation by death" in randomized experiments arises in many fields, such as medicine, economics and education. Traditional approaches addressing this issue ignore the fact that the outcome after the truncation is neither "censored" nor "missing," but should be treated as being defined on an extended sample space. Using an…

  6. 12 CFR Appendix D to Part 229 - Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 12 Banks and Banking 3 2014-01-01 2014-01-01 false Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards D Appendix D to Part 229 Banks and Banking FEDERAL..., Reconverting Bank Identification, and Truncating Bank Identification Standards (1) The depositary bank...

  7. 12 CFR Appendix D to Part 229 - Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 12 Banks and Banking 3 2013-01-01 2013-01-01 false Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards D Appendix D to Part 229 Banks and Banking FEDERAL..., Reconverting Bank Identification, and Truncating Bank Identification Standards (1) The depositary bank...

  8. Reduction of truncation artifacts in fan beam transmission by using parallel beam emission data

    SciTech Connect

    Pan, T.S.; King, M.A.; Luo, D.S.; Case, J.A.; Penney, B.C.; Rajeevan, N.

    1995-08-01

    Transmission imaging has been demonstrated to be a promising technique to provide a patient specific attenuation map for attenuation correction of SPECT cardiac perfusion images. The authors describe a method which uses the measurement of both photopeak and Compton scatter energy window images from a parallel beam collimation to augment the truncated attenuation map reconstruction in a fan beam transmission system. The method first estimates the body and lung outlines from the reconstructed emission data and truncated attenuation map. Based on the outline information, an assigned attenuation map is created and reprojected to estimate the missed projection data, which are then combined with the truncated projection data for the set of complete data without truncation. Finally, a reconstruction using the combined complete data is performed to obtain the attenuation map with no truncation. The authors demonstrate that this method can significantly reduce the truncation artifacts in two phantom studies and one patient study. When some portion of the heart walls stays outside the densely sampled region (defined as the region of the object that has no truncation in any projection angle), the attenuation map estimated from this method can more effectively correct for the attenuation in the emission data than the truncated attenuation map.

  9. Phase diagram and structural diversity of a family of truncated cubes: degenerate close-packed structures and vacancy-rich states.

    PubMed

    Gantapara, Anjan P; de Graaf, Joost; van Roij, René; Dijkstra, Marjolein

    2013-07-01

    Using Monte Carlo simulations and free-energy calculations, we determine the phase diagram of a family of truncated hard cubes, where the shape evolves smoothly from a cube via a cuboctahedron to an octahedron. A remarkable diversity in crystal phases and close-packed structures is found, including a fully degenerate crystal structure, several plastic crystals, as well as vacancy-stabilized crystal phases, all depending sensitively on the precise particle shape. Our results illustrate the intricate relation between phase behavior and building-block shape, and can guide future experimental studies on polyhedral-shaped nanoparticles. PMID:23863011

  10. Atmospheric Blocking in the Northern Hemisphere.

    NASA Astrophysics Data System (ADS)

    Knox, John Lewis

    Blocking is generally understood as the obstruction on a large scale of the normal west - to - east motion of mid-latitude pressure systems. It is a persistent phenomenon lasting from one to several weeks and the resulting prolonged weather regimes may have serious economic and social consequences. The recent Northern Hemisphere winters, starting with 1976 -77, featured unusually large circulation anomalies, many of which can be directly related to prolonged episodes of large scale blocking. The intent of this study is to investigate the statistics and certain diagnostics of blocking in the Northern Hemisphere. The first of the three primary objectives is to present and interpret the spatial and temporal distribution of blocking during the past 33 years. We develop objective identification criteria, adaptable to machine processing methods, by relating the blocking anticyclone to its associated positive anomaly of 5-day mean 500MB height. Anomalies meeting the criteria are called 'blocking signatures.' We present the seasonal frequency of occurrence of these signatures by longitude and by area. The results are in good agreement with published studies for the oceans, but they also reveal a high frequency of blocking signatures over the Northeastern Canadian Archipelago. This result, dubbed the 'Baffin Island Paradox' is further investigated and rationalized. A catalogue has been prepared which identifies the date, centre location and magnitude of every blocking signature which occurred from January 1, 1946 to December 31, 1978. A supplementary Catalogue identifies sequences of these signatures corresponding to actual blocking episodes. The second objective is to investigate whether regions with high incidence of blocking, in either the developing or the mature stage, features non-Gaussian distributions of 5-day mean geopotential. During winter, fields of significantly low kurtosis are found in certain mid-latitude regions where the genesis and amplification of

  11. Optical cryptosystem based on phase-truncated Fresnel diffraction and transport of intensity equation.

    PubMed

    Zhang, Chenggong; He, Wenqi; Wu, Jiachen; Peng, Xiang

    2015-04-01

    A novel optical cryptosystem based on phase-truncated Fresnel diffraction (PTFD) and transport of intensity equation (TIE) is proposed. By using the phase truncation technique, a phase-encoded plaintext could be encrypted into a real-valued noise-like intensity distribution by employing a random amplitude mask (RAM) and a random phase mask (RPM), which are regarded as two secret keys. For decryption, a generalized amplitude-phase retrieval (GAPR) algorithm combined with the TIE method are proposed to recover the plaintext with the help of two keys. Different from the current phase-truncated-based optical cryptosystems which need record the truncated phase as decryption keys, our scheme do not need the truncated phase because of the introducing of the TIE method. Moreover, the proposed scheme is expected to against existing attacks. A set of numerical simulation results show the feasibility and security of the proposed method. PMID:25968722

  12. Dynamic Covalent Nanoparticle Building Blocks.

    PubMed

    Kay, Euan R

    2016-07-25

    Rational and generalisable methods for engineering surface functionality will be crucial to realising the technological potential of nanomaterials. Nanoparticle-bound dynamic covalent exchange combines the error-correcting and environment-responsive features of equilibrium processes with the stability, structural precision, and vast diversity of covalent chemistry, defining a new and powerful approach for manipulating structure, function and properties at nanomaterial surfaces. Dynamic covalent nanoparticle (DCNP) building blocks thus present a whole host of possibilities for constructing adaptive systems, devices and materials that incorporate both nanoscale and molecular functional components. At the same time, DCNPs have the potential to reveal fundamental insights regarding dynamic and complex chemical systems confined to nanoscale interfaces. PMID:27312526

  13. Truncation of NHEJ1 in a patient with polymicrogyria.

    PubMed

    Cantagrel, Vincent; Lossi, Anne-Marie; Lisgo, Steven; Missirian, Chantal; Borges, Ana; Philip, Nicole; Fernandez, Carla; Cardoso, Carlos; Figarella-Branger, Dominique; Moncla, Anne; Lindsay, Susan; Dobyns, William B; Villard, Laurent

    2007-04-01

    Polymicrogyria (PMG) is a common malformation of the human cerebral cortex for which both acquired and genetic causes are known. Although genetic heterogeneity is documented, only one gene is currently known to cause isolated PMG. To clone new genes involved in this type of cerebral malformation, we studied a fetus presenting a defect of cortical organization consisting of a polymicrogyric cortex and neuronal heterotopia within the white matter. Karyotype analysis revealed that the fetus was carrier of a balanced, de novo, chromosomal translocation t(2;7)(q35;p22). Cloning and sequencing of the two translocation breakpoints reveals that the chromosomal rearrangement disrupts the coding region of a single gene, called NHEJ1, Cernunnos, or XLF, in 2q35. The NHEJ1 gene was recently identified as being responsible for autosomal recessive immunodeficiency with microcephaly. Using quantitative PCR experiments, we show that a truncated transcript is expressed in the polymicrogyric patient cells, suggesting a potential dominant negative effect possibly leading to a different phenotype. We performed in situ hybridization on human embryos and showed that the NHEJ1 transcript is preferentially expressed in the telencephalic ventricular and subventricular zones, consistent with the phenotype of the affected individual. In the human adult central nervous system (CNS), NHEJ1 is mainly expressed in the cerebral cortex and in the cerebellum. The association of PMG with the disruption of its transcript suggests that, in addition to its recently uncovered function in the immune system, the NHEJ1 protein may also play a role during development of the human cerebral cortex. PMID:17191205

  14. A hemoglobin from plants homologous to truncated hemoglobins of microorganisms.

    PubMed

    Watts, R A; Hunt, P W; Hvitved, A N; Hargrove, M S; Peacock, W J; Dennis, E S

    2001-08-28

    We have identified a nuclear-encoded Hb from plants (GLB3) that has a central domain similar to the "truncated" Hbs of bacteria, protozoa, and algae. The three-dimensional structure of these Hbs is a 2-on-2 arrangement of alpha-helices, distinct from the 3-on-3 arrangement of the standard globin fold [Pesce, A., Couture, M., Dewilde, S., Guertin, M., Yamauchi, K., Ascenzi, P., Moens, L. & Bolognesi, M. (2000) EMBO J. 19, 2424-2434]. GLB3-like genes are not found in animals or yeast, but our analysis reveals that they are present in a wide range of Angiosperms and a Bryophyte. Although cyanobacteria and Chlamydomonas have 2-on-2 Hbs (GLBN), GLB3 is more likely related to GLBO-type 2-on-2 Hbs from bacteria. Consequently, GLB3 is unlikely to have arisen from a horizontal transfer between the chloroplast and nuclear genomes. Arabidopsis thaliana GLB3 protein exhibits unusual concentration-independent binding of O(2) and CO. The absorbance spectrum of deoxy-GLB3 is unique; the protein forms a transient six-coordinate structure after reduction and deoxygenation, which slowly converts to a five-coordinate structure. In A. thaliana, GLB3 is expressed throughout the plant but responds to none of the treatments that induce plant 3-on-3 Hbs. Our analysis of the sequence, ligand interactions, and expression profile of GLB3 indicates that this protein has unique biochemical properties, evolutionary history, and, most likely, a function distinct from those of other plant Hbs. PMID:11526234

  15. Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins

    PubMed Central

    Droghetti, Enrica; Tundo, Grazia R.; Sanz-Luque, Emanuel; Polticelli, Fabio; Visca, Paolo; Smulevich, Giulietta; Ascenzi, Paolo; Coletta, Massimo

    2015-01-01

    The single-cell green alga Chlamydomonas reinhardtii harbors twelve truncated hemoglobins (Cr-TrHbs). Cr-TrHb1-1 and Cr-TrHb1-8 have been postulated to be parts of the nitrogen assimilation pathway, and of a NO-dependent signaling pathway, respectively. Here, spectroscopic and reactivity properties of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4, all belonging to clsss 1 (previously known as group N or group I), are reported. The ferric form of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 displays a stable 6cLS heme-Fe atom, whereas the hexa-coordination of the ferrous derivative appears less strongly stabilized. Accordingly, kinetics of azide binding to ferric Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are independent of the ligand concentration. Conversely, kinetics of CO or NO2− binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are ligand-dependent at low CO or NO2− concentrations, tending to level off at high ligand concentrations, suggesting the presence of a rate-limiting step. In agreement with the different heme-Fe environments, the pH-dependent kinetics for CO and NO2−binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are characterized by different ligand-linked protonation events. This raises the question of whether the simultaneous presence in C. reinhardtii of multiple TrHb1s may be related to different regulatory roles. PMID:25993270

  16. Functional and Spectroscopic Characterization of Chlamydomonas reinhardtii Truncated Hemoglobins.

    PubMed

    Ciaccio, Chiara; Ocaña-Calahorro, Francisco; Droghetti, Enrica; Tundo, Grazia R; Sanz-Luque, Emanuel; Polticelli, Fabio; Visca, Paolo; Smulevich, Giulietta; Ascenzi, Paolo; Coletta, Massimo

    2015-01-01

    The single-cell green alga Chlamydomonas reinhardtii harbors twelve truncated hemoglobins (Cr-TrHbs). Cr-TrHb1-1 and Cr-TrHb1-8 have been postulated to be parts of the nitrogen assimilation pathway, and of a NO-dependent signaling pathway, respectively. Here, spectroscopic and reactivity properties of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4, all belonging to clsss 1 (previously known as group N or group I), are reported. The ferric form of Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 displays a stable 6cLS heme-Fe atom, whereas the hexa-coordination of the ferrous derivative appears less strongly stabilized. Accordingly, kinetics of azide binding to ferric Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are independent of the ligand concentration. Conversely, kinetics of CO or NO2- binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are ligand-dependent at low CO or NO2- concentrations, tending to level off at high ligand concentrations, suggesting the presence of a rate-limiting step. In agreement with the different heme-Fe environments, the pH-dependent kinetics for CO and NO2-binding to ferrous Cr-TrHb1-1, Cr-TrHb1-2, and Cr-TrHb1-4 are characterized by different ligand-linked protonation events. This raises the question of whether the simultaneous presence in C. reinhardtii of multiple TrHb1s may be related to different regulatory roles. PMID:25993270

  17. Damping models in the truncated derivative nonlinear Schroedinger equation

    SciTech Connect

    Sanchez-Arriaga, G.; Sanmartin, J. R.; Elaskar, S. A.

    2007-08-15

    Four-dimensional flow in the phase space of three amplitudes of circularly polarized Alfven waves and one relative phase, resulting from a resonant three-wave truncation of the derivative nonlinear Schroedinger equation, has been analyzed; wave 1 is linearly unstable with growth rate {gamma}, and waves 2 and 3 are stable with damping {gamma}{sub 2} and {gamma}{sub 3}, respectively. The dependence of gross dynamical features on the damping model (as characterized by the relation between damping and wave-vector ratios, {gamma}{sub 2}/{gamma}{sub 3}, k{sub 2}/k{sub 3}), and the polarization of the waves, is discussed; two damping models, Landau ({gamma}{proportional_to}k) and resistive ({gamma}{proportional_to}k{sup 2}), are studied in depth. Very complex dynamics, such as multiple blue sky catastrophes and chaotic attractors arising from Feigenbaum sequences, and explosive bifurcations involving Intermittency-I chaos, are shown to be associated with the existence and loss of stability of certain fixed point P of the flow. Independently of the damping model, P may only exist for {gamma}<2({gamma}{sub 2}+{gamma}{sub 3})/3, as against flow contraction just requiring {gamma}<{gamma}{sub 2}+{gamma}{sub 3}. In the case of right-hand (RH) polarization, point P may exist for all models other than Landau damping; for the resistive model, P may exist for RH polarization only if {gamma}<({gamma}{sub 2}+{gamma}{sub 3})/2.

  18. Cell block eleven (left) and cell block fifteen, looking from ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Cell block eleven (left) and cell block fifteen, looking from cell block two into the "Death Row" exercise yard - Eastern State Penitentiary, 2125 Fairmount Avenue, Philadelphia, Philadelphia County, PA

  19. View of cell block eight (left), cell block seven, and ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View of cell block eight (left), cell block seven, and southwest guard tower, looking from cell block eight roof - Eastern State Penitentiary, 2125 Fairmount Avenue, Philadelphia, Philadelphia County, PA

  20. Blocked tear duct

    MedlinePlus

    ... your baby may have an eye infection called conjunctivitis . ... increase the chance of other infections, such as conjunctivitis. ... be prevented. Proper treatment of nasal infections and conjunctivitis may reduce the risk of having a blocked ...

  1. RX for Writer's Block.

    ERIC Educational Resources Information Center

    Tompkins, Gail E.; Camp, Donna J.

    1988-01-01

    Describes four prewriting techniques that elementary and middle grade students can use to gather and organize ideas for writing, and by so doing, cure writer's block. Techniques discussed are: (1) brainstorming; (2) clustering; (3) freewriting; and (4) cubing.

  2. Superalloy Lattice Block Structures

    NASA Technical Reports Server (NTRS)

    Nathal, M. V.; Whittenberger, J. D.; Hebsur, M. G.; Kantzos, P. T.; Krause, D. L.

    2004-01-01

    Initial investigations of investment cast superalloy lattice block suggest that this technology will yield a low cost approach to utilize the high temperature strength and environmental resistance of superalloys in lightweight, damage tolerant structural configurations. Work to date has demonstrated that relatively large superalloy lattice block panels can be successfully investment cast from both IN-718 and Mar-M247. These castings exhibited mechanical properties consistent with the strength of the same superalloys measured from more conventional castings. The lattice block structure also accommodates significant deformation without failure, and is defect tolerant in fatigue. The potential of lattice block structures opens new opportunities for the use of superalloys in future generations of aircraft applications that demand strength and environmental resistance at elevated temperatures along with low weight.

  3. Block copolymer battery separator

    DOEpatents

    Wong, David; Balsara, Nitash Pervez

    2016-04-26

    The invention herein described is the use of a block copolymer/homopolymer blend for creating nanoporous materials for transport applications. Specifically, this is demonstrated by using the block copolymer poly(styrene-block-ethylene-block-styrene) (SES) and blending it with homopolymer polystyrene (PS). After blending the polymers, a film is cast, and the film is submerged in tetrahydrofuran, which removes the PS. This creates a nanoporous polymer film, whereby the holes are lined with PS. Control of morphology of the system is achieved by manipulating the amount of PS added and the relative size of the PS added. The porous nature of these films was demonstrated by measuring the ionic conductivity in a traditional battery electrolyte, 1M LiPF.sub.6 in EC/DEC (1:1 v/v) using AC impedance spectroscopy and comparing these results to commercially available battery separators.

  4. Perceptually-Based Adaptive JPEG Coding

    NASA Technical Reports Server (NTRS)

    Watson, Andrew B.; Rosenholtz, Ruth; Null, Cynthia H. (Technical Monitor)

    1996-01-01

    An extension to the JPEG standard (ISO/IEC DIS 10918-3) allows spatial adaptive coding of still images. As with baseline JPEG coding, one quantization matrix applies to an entire image channel, but in addition the user may specify a multiplier for each 8 x 8 block, which multiplies the quantization matrix, yielding the new matrix for the block. MPEG 1 and 2 use much the same scheme, except there the multiplier changes only on macroblock boundaries. We propose a method for perceptual optimization of the set of multipliers. We compute the perceptual error for each block based upon DCT quantization error adjusted according to contrast sensitivity, light adaptation, and contrast masking, and pick the set of multipliers which yield maximally flat perceptual error over the blocks of the image. We investigate the bitrate savings due to this adaptive coding scheme and the relative importance of the different sorts of masking on adaptive coding.

  5. A Support Vector Machine Approach for Truncated Fingerprint Image Detection from Sweeping Fingerprint Sensors

    PubMed Central

    Chen, Chi-Jim; Pai, Tun-Wen; Cheng, Mox

    2015-01-01

    A sweeping fingerprint sensor converts fingerprints on a row by row basis through image reconstruction techniques. However, a built fingerprint image might appear to be truncated and distorted when the finger was swept across a fingerprint sensor at a non-linear speed. If the truncated fingerprint images were enrolled as reference targets and collected by any automated fingerprint identification system (AFIS), successful prediction rates for fingerprint matching applications would be decreased significantly. In this paper, a novel and effective methodology with low time computational complexity was developed for detecting truncated fingerprints in a real time manner. Several filtering rules were implemented to validate existences of truncated fingerprints. In addition, a machine learning method of supported vector machine (SVM), based on the principle of structural risk minimization, was applied to reject pseudo truncated fingerprints containing similar characteristics of truncated ones. The experimental result has shown that an accuracy rate of 90.7% was achieved by successfully identifying truncated fingerprint images from testing images before AFIS enrollment procedures. The proposed effective and efficient methodology can be extensively applied to all existing fingerprint matching systems as a preliminary quality control prior to construction of fingerprint templates. PMID:25835186

  6. A support vector machine approach for truncated fingerprint image detection from sweeping fingerprint sensors.

    PubMed

    Chen, Chi-Jim; Pai, Tun-Wen; Cheng, Mox

    2015-01-01

    A sweeping fingerprint sensor converts fingerprints on a row by row basis through image reconstruction techniques. However, a built fingerprint image might appear to be truncated and distorted when the finger was swept across a fingerprint sensor at a non-linear speed. If the truncated fingerprint images were enrolled as reference targets and collected by any automated fingerprint identification system (AFIS), successful prediction rates for fingerprint matching applications would be decreased significantly. In this paper, a novel and effective methodology with low time computational complexity was developed for detecting truncated fingerprints in a real time manner. Several filtering rules were implemented to validate existences of truncated fingerprints. In addition, a machine learning method of supported vector machine (SVM), based on the principle of structural risk minimization, was applied to reject pseudo truncated fingerprints containing similar characteristics of truncated ones. The experimental result has shown that an accuracy rate of 90.7% was achieved by successfully identifying truncated fingerprint images from testing images before AFIS enrollment procedures. The proposed effective and efficient methodology can be extensively applied to all existing fingerprint matching systems as a preliminary quality control prior to construction of fingerprint templates. PMID:25835186

  7. Unstructured mesh generation and adaptivity

    NASA Technical Reports Server (NTRS)

    Mavriplis, D. J.

    1995-01-01

    An overview of current unstructured mesh generation and adaptivity techniques is given. Basic building blocks taken from the field of computational geometry are first described. Various practical mesh generation techniques based on these algorithms are then constructed and illustrated with examples. Issues of adaptive meshing and stretched mesh generation for anisotropic problems are treated in subsequent sections. The presentation is organized in an education manner, for readers familiar with computational fluid dynamics, wishing to learn more about current unstructured mesh techniques.

  8. Dimerization of truncated melittin analogues results in cytolytic peptides.

    PubMed Central

    Rivett, D E; Kirkpatrick, A; Hewish, D R; Reilly, W; Werkmeister, J A

    1996-01-01

    A synthetic peptide with the sequence of the first 20 residues of melittin and terminating with an additional cysteine amide was found to have cytolytic activity similar to that of melittin. It was apparent from MS data that the cysteine-terminating peptides had formed disulphide dimers. A peptide in which the thiol was blocked by iodoacetate showed no activity, whereas the same peptide blocked by acetamidomethyl showed activity marginally less haemolytic than that of melittin. Cytolytic activity of melittin analogues comprising the full 26 residues could be obtained with wide sequence permutations providing that a general amphipathic helical structure was preserved. In contrast, the activity of the dimers was dependent not only on retention of an amphipathic helix but also on certain individual residues and a free positive charge. A free N-terminus was essential for haemolytic activity. In addition, a lysine or arginine residue at position 7 and a proline at position 14 were found to be necessary for activity, although it was apparent that additional residues are important for retention of the full lytic potential. PMID:8687396

  9. Elimination of truncated recombinant protein expressed in Escherichia coli by removing cryptic translation initiation site.

    PubMed

    Jennings, Matthew J; Barrios, Adam F; Tan, Song

    2016-05-01

    Undesirable truncated recombinant protein products pose a special expression and purification challenge because such products often share similar chromatographic properties as the desired full length protein. We describe here our observation of both full length and a truncated form of a yeast protein (Gcn5) expressed in Escherichia coli, and the reduction or elimination of the truncated form by mutating a cryptic Shine-Dalgarno or START codon within the Gcn5 coding region. Unsuccessful attempts to engineer in a cryptic translation initiation site into other recombinant proteins suggest that cryptic Shine-Dalgarno or START codon sequences are necessary but not sufficient for cryptic translation in E. coli. PMID:26739786

  10. Born-Infeld Electrodynamics and Euler-Heisenberg Model:. Outstanding Examples of the Lack of Commutativity among Quantized Truncated Actions and Truncated Quantized Actions

    NASA Astrophysics Data System (ADS)

    Accioly, Antonio; Gaete, Patricio; Helaÿel-Neto, José A.

    We calculate the lowest-order corrections to the static potential for both the generalized Born-Infeld electrodynamics and an Euler-Heisenberg-like model, in the presence of a constant external magnetic field. Our analysis is carried out within the framework of the gauge-invariant but path-dependent variables formalism. The calculation reveals a long-range correction ((1)/(r5)-type) to the Coulomb potential for the generalized Born-Infeld electrodynamics. Interestingly enough, in the Euler-Heisenberg-like model, the static potential remains Coulombian. Therefore, contrary to popular belief, the quantized truncated action and the truncated quantized action do not commute at all.

  11. Adaptations to training at the individual anaerobic threshold.

    PubMed

    Keith, S P; Jacobs, I; McLellan, T M

    1992-01-01

    The individual anaerobic threshold (Th(an)) is the highest metabolic rate at which blood lactate concentrations can be maintained at a steady-state during prolonged exercise. The purpose of this study was to test the hypothesis that training at the Th(an) would cause a greater change in indicators of training adaptation than would training "around" the Th(an). Three groups of subjects were evaluated before, and again after 4 and 8 weeks of training: a control group, a group which trained continuously for 30 min at the Th(an) intensity (SS), and a group (NSS) which divided the 30 min of training into 7.5-min blocks at intensities which alternated between being below the Th(an) [Th(an) -30% of the difference between Th(an) and maximal oxygen consumption (VO2max)] and above the Th(an) (Th(an) +30% of the difference between Th(an) and VO2max). The VO2max increased significantly from 4.06 to 4.27 l.min-1 in SS and from 3.89 to 4.06 l.min-1 in NSS. The power output (W) at Th(an) increased from 70.5 to 79.8% VO2max in SS and from 71.1 to 80.7% VO2max in NSS. The magnitude of change in VO2max, W at Th(an), % VO2max at Th(an) and in exercise time to exhaustion at the pretraining Th(an) was similar in both trained groups. Vastus lateralis citrate synthase and 3-hydroxyacyl-CoA-dehydrogenase activities increased to the same extent in both trained groups. While all of these training-induced adaptations were statistically significant (P < 0.05), there were no significant changes in any of these variables for the control subjects.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:1425631

  12. Adaptive Management

    EPA Science Inventory

    Adaptive management is an approach to natural resource management that emphasizes learning through management where knowledge is incomplete, and when, despite inherent uncertainty, managers and policymakers must act. Unlike a traditional trial and error approach, adaptive managem...

  13. Impression block with orientator

    NASA Astrophysics Data System (ADS)

    Brilin, V. I.; Ulyanova, O. S.

    2015-02-01

    Tool review, namely the impression block, applied to check the shape and size of the top of fish as well as to determine the appropriate tool for fishing operation was realized. For multiple application and obtaining of the impress depth of 3 cm and more, the standard volumetric impression blocks with fix rods are used. However, the registered impress of fish is not oriented in space and the rods during fishing are in the extended position. This leads to rods deformation and sinking due to accidental impacts of impression block over the borehole irregularity and finally results in faulty detection of the top end of fishing object in hole. The impression blocks with copy rods and fixed magnetic needle allow estimating the object configuration and fix the position of magnetic needle determining the position of the top end of object in hole. However, the magnetic needle fixation is realized in staged and the rods are in extended position during fishing operations as well as it is in standard design. The most efficient tool is the impression block with copy rods which directs the examined object in the borehole during readings of magnetic needles data from azimuth plate and averaging of readings. This significantly increases the accuracy of fishing toll direction. The rods during fishing are located in the body and extended only when they reach the top of fishing object.

  14. Systematic renormalization scheme in light-front dynamics with Fock space truncation

    SciTech Connect

    Karmanov, V. A.; Smirnov, A. V.; Mathiot, J.-F.

    2008-04-15

    Within the framework of the covariant formulation of light-front dynamics, we develop a general nonperturbative renormalization scheme based on the Fock decomposition of the state vector and its truncation. The counterterms and bare parameters needed to renormalize the theory depend on the Fock sectors. We present a general strategy in order to calculate these quantities, as well as state vectors of physical systems, in a truncated Fock space. The explicit dependence of our formalism on the orientation of the light-front plane is essential in order to analyze the structure of the counterterms. We apply our formalism to the two-body (one fermion and one boson) truncation in the Yukawa model and in QED, and to the three-body truncation in a scalar model. In QED, we recover analytically, without any perturbative expansion, the renormalization of the electric charge, according to the requirements of the Ward identity.

  15. Truncated Hexa-Octahedral Magnetites: Biosignatures in Terrestrial Samples and Martian Meteorite ALH84001

    NASA Technical Reports Server (NTRS)

    Thomas-Keprta, Kathie L.; Clemett, Simon J.; Bazylinski, Dennis A.; Kirschvink, Joseph L.; McKay, David S.; Wentworth, Susan J.; Vali, H.; Gibson, Everett K.

    2001-01-01

    We suggest that the observation of truncated hexa-octahedral magnetites in ALH84001 are both consistent with, and in the absence of terrestrial inorganic analogs, likely formed by biogenic processes. Additional information is contained in the original extended abstract.

  16. A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis

    PubMed Central

    Rivas, Manuel A.; Graham, Daniel; Sulem, Patrick; Stevens, Christine; Desch, A. Nicole; Goyette, Philippe; Gudbjartsson, Daniel; Jonsdottir, Ingileif; Thorsteinsdottir, Unnur; Degenhardt, Frauke; Mucha, Sören; Kurki, Mitja I.; Li, Dalin; D'Amato, Mauro; Annese, Vito; Vermeire, Severine; Weersma, Rinse K.; Halfvarson, Jonas; Paavola-Sakki, Paulina; Lappalainen, Maarit; Lek, Monkol; Cummings, Beryl; Tukiainen, Taru; Haritunians, Talin; Halme, Leena; Koskinen, Lotta L. E.; Ananthakrishnan, Ashwin N.; Luo, Yang; Heap, Graham A.; Visschedijk, Marijn C.; Barrett, J; de Lange, K; Edwards, C; Hart, A; Hawkey, C; Jostins, L; Kennedy, N; Lamb, C; Lee, J; Lees, C; Mansfield, J; Mathew, C; Mowatt, C; Newman, W; Nimmo, E; Parkes, M; Pollard, M; Prescott, N; Randall, J; Rice, D; Satsangi, J; Simmons, A; Tremelling, M; Uhlig, H; Wilson, D; Abraham, C; Achkar, J.P; Bitton, A; Boucher, G; Croitoru, K; Fleshner, P; Glas, J; Kugathasan, S; Limbergen, J.V; Milgrom, R; Proctor, D; Regueiro, M; Schumm, P.L; Sharma, Y; Stempak, J.M; Targan, S.R; Wang, M.H; MacArthur, Daniel G.; Neale, Benjamin M.; Ahmad, Tariq; Anderson, Carl A.; Brant, Steven R.; Duerr, Richard H.; Silverberg, Mark S.; Cho, Judy H; Palotie, Aarno; Saavalainen, Päivi; Kontula, Kimmo; Färkkilä, Martti; McGovern, Dermot P. B.; Franke, Andre; Stefansson, Kari; Rioux, John D.; Xavier, Ramnik J.; Daly, Mark J.; Barrett, J.; de Lane, K.; Edwards, C.; Hart, A.; Hawkey, C.; Jostins, L.; Kennedy, N.; Lamb, C.; Lee, J.; Lees, C.; Mansfield, J.; Mathew, C.; Mowatt, C.; Newman, B.; Nimmo, E.; Parkes, M.; Pollard, M.; Prescott, N.; Randall, J.; Rice, D.; Satsangi, J.; Simmons, A.; Tremelling, M.; Uhlig, H.; Wilson, D.; Abraham, C.; Achkar, J. P.; Bitton, A.; Boucher, G.; Croitoru, K.; Fleshner, P.; Glas, J.; Kugathasan, S.; Limbergen, J. V.; Milgrom, R.; Proctor, D.; Regueiro, M.; Schumm, P. L.; Sharma, Y.; Stempak, J. M.; Targan, S. R.; Wang, M. H.

    2016-01-01

    Protein-truncating variants protective against human disease provide in vivo validation of therapeutic targets. Here we used targeted sequencing to conduct a search for protein-truncating variants conferring protection against inflammatory bowel disease exploiting knowledge of common variants associated with the same disease. Through replication genotyping and imputation we found that a predicted protein-truncating variant (rs36095412, p.R179X, genotyped in 11,148 ulcerative colitis patients and 295,446 controls, MAF=up to 0.78%) in RNF186, a single-exon ring finger E3 ligase with strong colonic expression, protects against ulcerative colitis (overall P=6.89 × 10−7, odds ratio=0.30). We further demonstrate that the truncated protein exhibits reduced expression and altered subcellular localization, suggesting the protective mechanism may reside in the loss of an interaction or function via mislocalization and/or loss of an essential transmembrane domain. PMID:27503255

  17. A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis.

    PubMed

    Rivas, Manuel A; Graham, Daniel; Sulem, Patrick; Stevens, Christine; Desch, A Nicole; Goyette, Philippe; Gudbjartsson, Daniel; Jonsdottir, Ingileif; Thorsteinsdottir, Unnur; Degenhardt, Frauke; Mucha, Sören; Kurki, Mitja I; Li, Dalin; D'Amato, Mauro; Annese, Vito; Vermeire, Severine; Weersma, Rinse K; Halfvarson, Jonas; Paavola-Sakki, Paulina; Lappalainen, Maarit; Lek, Monkol; Cummings, Beryl; Tukiainen, Taru; Haritunians, Talin; Halme, Leena; Koskinen, Lotta L E; Ananthakrishnan, Ashwin N; Luo, Yang; Heap, Graham A; Visschedijk, Marijn C; MacArthur, Daniel G; Neale, Benjamin M; Ahmad, Tariq; Anderson, Carl A; Brant, Steven R; Duerr, Richard H; Silverberg, Mark S; Cho, Judy H; Palotie, Aarno; Saavalainen, Päivi; Kontula, Kimmo; Färkkilä, Martti; McGovern, Dermot P B; Franke, Andre; Stefansson, Kari; Rioux, John D; Xavier, Ramnik J; Daly, Mark J; Barrett, J; de Lane, K; Edwards, C; Hart, A; Hawkey, C; Jostins, L; Kennedy, N; Lamb, C; Lee, J; Lees, C; Mansfield, J; Mathew, C; Mowatt, C; Newman, B; Nimmo, E; Parkes, M; Pollard, M; Prescott, N; Randall, J; Rice, D; Satsangi, J; Simmons, A; Tremelling, M; Uhlig, H; Wilson, D; Abraham, C; Achkar, J P; Bitton, A; Boucher, G; Croitoru, K; Fleshner, P; Glas, J; Kugathasan, S; Limbergen, J V; Milgrom, R; Proctor, D; Regueiro, M; Schumm, P L; Sharma, Y; Stempak, J M; Targan, S R; Wang, M H

    2016-01-01

    Protein-truncating variants protective against human disease provide in vivo validation of therapeutic targets. Here we used targeted sequencing to conduct a search for protein-truncating variants conferring protection against inflammatory bowel disease exploiting knowledge of common variants associated with the same disease. Through replication genotyping and imputation we found that a predicted protein-truncating variant (rs36095412, p.R179X, genotyped in 11,148 ulcerative colitis patients and 295,446 controls, MAF=up to 0.78%) in RNF186, a single-exon ring finger E3 ligase with strong colonic expression, protects against ulcerative colitis (overall P=6.89 × 10(-7), odds ratio=0.30). We further demonstrate that the truncated protein exhibits reduced expression and altered subcellular localization, suggesting the protective mechanism may reside in the loss of an interaction or function via mislocalization and/or loss of an essential transmembrane domain. PMID:27503255

  18. Truncation of tau at E391 Promotes Early Pathological Changes in Transgenic Mice

    PubMed Central

    McMillan, Pamela J.; Kraemer, Brian C.; Robinson, Linda; Leverenz, James B.; Raskind, Murray; Schellenberg, Gerard

    2011-01-01

    Proteolytic cleavage of tau at glutamic acid 391 (E391) is linked to the pathogenesis of Alzheimer disease (AD). This C-terminal truncated tau species exists in neurofibrillary tangles and abnormal neurites in the brains of AD patients and may potentiate tau polymerization. We generated a mouse model that expresses human tau truncated at E391 to begin to elucidate the role of this C-terminal truncated tau species in the development of tau pathology. Our results show that truncated but otherwise wild type human tau is sufficient to drive pre-tangle pathological changes in tau, including accumulation of insoluble tau, somatodendritic redistribution, formation of pathological conformations, and dual phosphorylation of tau at sites associated with AD pathology. In addition, these mice exhibit atypical neuritic tau immunoreactivity, including abnormal neuritic processes and dystrophic neurites. These results suggest that changes in tau proteolysis can initiate tauopathy. PMID:22002427

  19. State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation.

    PubMed

    Cao, Youfang; Terebus, Anna; Liang, Jie

    2016-04-01

    The discrete chemical master equation (dCME) provides a general framework for studying stochasticity in mesoscopic reaction networks. Since its direct solution rapidly becomes intractable due to the increasing size of the state space, truncation of the state space is necessary for solving most dCMEs. It is therefore important to assess the consequences of state space truncations so errors can be quantified and minimized. Here we describe a novel method for state space truncation. By partitioning a reaction network into multiple molecular equivalence groups (MEGs), we truncate the state space by limiting the total molecular copy numbers in each MEG. We further describe a theoretical framework for analysis of the truncation error in the steady-state probability landscape using reflecting boundaries. By aggregating the state space based on the usage of a MEG and constructing an aggregated Markov process, we show that the truncation error of a MEG can be asymptotically bounded by the probability of states on the reflecting boundary of the MEG. Furthermore, truncating states of an arbitrary MEG will not undermine the estimated error of truncating any other MEGs. We then provide an overall error estimate for networks with multiple MEGs. To rapidly determine the appropriate size of an arbitrary MEG, we also introduce an a priori method to estimate the upper bound of its truncation error. This a priori estimate can be rapidly computed from reaction rates of the network, without the need of costly trial solutions of the dCME. As examples, we show results of applying our methods to the four stochastic networks of (1) the birth and death model, (2) the single gene expression model, (3) the genetic toggle switch model, and (4) the phage lambda bistable epigenetic switch model. We demonstrate how truncation errors and steady-state probability landscapes can be computed using different sizes of the MEG(s) and how the results validate our theories. Overall, the novel state space

  20. State space truncation with quantified errors for accurate solutions to discrete Chemical Master Equation

    PubMed Central

    Cao, Youfang; Terebus, Anna; Liang, Jie

    2016-01-01

    The discrete chemical master equation (dCME) provides a general framework for studying stochasticity in mesoscopic reaction networks. Since its direct solution rapidly becomes intractable due to the increasing size of the state space, truncation of the state space is necessary for solving most dCMEs. It is therefore important to assess the consequences of state space truncations so errors can be quantified and minimized. Here we describe a novel method for state space truncation. By partitioning a reaction network into multiple molecular equivalence groups (MEG), we truncate the state space by limiting the total molecular copy numbers in each MEG. We further describe a theoretical framework for analysis of the truncation error in the steady state probability landscape using reflecting boundaries. By aggregating the state space based on the usage of a MEG and constructing an aggregated Markov process, we show that the truncation error of a MEG can be asymptotically bounded by the probability of states on the reflecting boundary of the MEG. Furthermore, truncating states of an arbitrary MEG will not undermine the estimated error of truncating any other MEGs. We then provide an overall error estimate for networks with multiple MEGs. To rapidly determine the appropriate size of an arbitrary MEG, we also introduce an a priori method to estimate the upper bound of its truncation error. This a priori estimate can be rapidly computed from reaction rates of the network, without the need of costly trial solutions of the dCME. As examples, we show results of applying our methods to the four stochastic networks of 1) the birth and death model, 2) the single gene expression model, 3) the genetic toggle switch model, and 4) the phage lambda bistable epigenetic switch model. We demonstrate how truncation errors and steady state probability landscapes can be computed using different sizes of the MEG(s) and how the results validate out theories. Overall, the novel state space

  1. Bactericidal block copolymer micelles.

    PubMed

    Vyhnalkova, Renata; Eisenberg, Adi; van de Ven, Theo

    2011-05-12

    Block copolymer micelles with bactericidal properties were designed to deactivate pathogens such as E. coli bacteria. The micelles of PS-b-PAA and PS-b-P4VP block copolymers were loaded with biocides TCMTB or TCN up to 20 or 30 wt.-%, depending on the type of antibacterial agent. Bacteria were exposed to loaded micelles and bacterial deactivation was evaluated. The micelles loaded with TCN are bactericidal; bacteria are killed in less than two minutes of exposure. The most likely interpretation of the data is that the biocide is transferred to the bacteria by repeated micelle/bacteria contacts, and not via the solution. PMID:21275041

  2. Immature truncated O-glycophenotype of cancer directly induces oncogenic features

    PubMed Central

    Radhakrishnan, Prakash; Dabelsteen, Sally; Madsen, Frey Brus; Francavilla, Chiara; Kopp, Katharina L.; Steentoft, Catharina; Vakhrushev, Sergey Y.; Olsen, Jesper V.; Hansen, Lars; Bennett, Eric P.; Woetmann, Anders; Yin, Guangliang; Chen, Longyun; Song, Haiyan; Bak, Mads; Hlady, Ryan A.; Peters, Staci L.; Opavsky, Rene; Thode, Christenze; Qvortrup, Klaus; Schjoldager, Katrine T.-B. G.; Clausen, Henrik; Hollingsworth, Michael A.; Wandall, Hans H.

    2014-01-01

    Aberrant expression of immature truncated O-glycans is a characteristic feature observed on virtually all epithelial cancer cells, and a very high frequency is observed in early epithelial premalignant lesions that precede the development of adenocarcinomas. Expression of the truncated O-glycan structures Tn and sialyl-Tn is strongly associated with poor prognosis and overall low survival. The genetic and biosynthetic mechanisms leading to accumulation of truncated O-glycans are not fully understood and include mutation or dysregulation of glycosyltransferases involved in elongation of O-glycans, as well as relocation of glycosyltransferases controlling initiation of O-glycosylation from Golgi to endoplasmic reticulum. Truncated O-glycans have been proposed to play functional roles for cancer-cell invasiveness, but our understanding of the biological functions of aberrant glycosylation in cancer is still highly limited. Here, we used exome sequencing of most glycosyltransferases in a large series of primary and metastatic pancreatic cancers to rule out somatic mutations as a cause of expression of truncated O-glycans. Instead, we found hypermethylation of core 1 β3-Gal-T-specific molecular chaperone, a key chaperone for O-glycan elongation, as the most prevalent cause. We next used gene editing to produce isogenic cell systems with and without homogenous truncated O-glycans that enabled, to our knowledge, the first polyomic and side-by-side evaluation of the cancer O-glycophenotype in an organotypic tissue model and in xenografts. The results strongly suggest that truncation of O-glycans directly induces oncogenic features of cell growth and invasion. The study provides support for targeting cancer-specific truncated O-glycans with immunotherapeutic measures. PMID:25118277

  3. Quark-hadron duality and truncated moments of nucleon structure functions

    SciTech Connect

    Psaker, A.; Melnitchouk, W.; Christy, M. E.; Keppel, C.

    2008-08-15

    We employ a novel new approach to study local quark-hadron duality using 'truncated' moments, or integrals of structure functions over restricted regions of x, to determine the degree to which individual resonance regions are dominated by leading twist. Because truncated moments obey the same Q{sup 2} evolution equations as the leading twist parton distributions, this approach makes possible for the first time a description of resonance region data and the phenomenon of quark-hadron duality directly from QCD.

  4. The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome.

    PubMed

    Bartha, István; Rausell, Antonio; McLaren, Paul J; Mohammadi, Pejman; Tardaguila, Manuel; Chaturvedi, Nimisha; Fellay, Jacques; Telenti, Amalio

    2015-12-01

    Sequencing projects have identified large numbers of rare stop-gain and frameshift variants in the human genome. As most of these are observed in the heterozygous state, they test a gene's tolerance to haploinsufficiency and dominant loss of function. We analyzed the distribution of truncating variants across 16,260 autosomal protein coding genes in 11,546 individuals. We observed 39,893 truncating variants affecting 12,062 genes, which significantly differed from an expectation of 12,916 genes under a model of neutral de novo mutation (p<10-4). Extrapolating this to increasing numbers of sequenced individuals, we estimate that 10.8% of human genes do not tolerate heterozygous truncating variants. An additional 10 to 15% of truncated genes may be rescued by incomplete penetrance or compensatory mutations, or because the truncating variants are of limited functional impact. The study of protein truncating variants delineates the essential genome and, more generally, identifies rare heterozygous variants as an unexplored source of diversity of phenotypic traits and diseases. PMID:26642228

  5. Truncation model in the triple-degenerate derivative nonlinear Schroedinger equation

    SciTech Connect

    Sanchez-Arriaga, G.; Hada, T.; Nariyuki, Y.

    2009-04-15

    The triple-degenerate derivative nonlinear Schroedinger (TDNLS) system modified with resistive wave damping and growth is truncated to study the coherent coupling of four waves, three Alfven and one acoustic, near resonance. In the conservative case, the truncation equations derive from a time independent Hamiltonian function with two degrees of freedom. Using a Poincare map analysis, two parameters regimes are explored. In the first regime we check how the modulational instability of the TDNLS system affects to the dynamics of the truncation model, while in the second one the exact triple degenerated case is discussed. In the dissipative case, the truncation model gives rise to a six dimensional flow with five free parameters. Computing some bifurcation diagrams the dependence with the sound to Alfven velocity ratio as well as the Alfven modes involved in the truncation is analyzed. The system exhibits a wealth of dynamics including chaotic attractor, several kinds of bifurcations, and crises. The truncation model was compared to numerical integrations of the TDNLS system.

  6. Truncated tau deregulates synaptic markers in rat model for human tauopathy

    PubMed Central

    Jadhav, Santosh; Katina, Stanislav; Kovac, Andrej; Kazmerova, Zuzana; Novak, Michal; Zilka, Norbert

    2015-01-01

    Synaptic failure and neurofibrillary degeneration are two major neuropathological substrates of cognitive dysfunction in Alzheimer’s disease (AD). Only a few studies have demonstrated a direct relationship between these two AD hallmarks. To investigate tau mediated synaptic injury we used rat model of tauopathy that develops extensive neurofibrillary pathology in the cortex. Using fractionation of cortical synapses, we identified an increase in endogenous rat tau isoforms in presynaptic compartment, and their mis-sorting to the postsynaptic density (PSD). Truncated transgenic tau was distributed in both compartments exhibiting specific phospho-pattern that was characteristic for each synaptic compartment. In the presynaptic compartment, truncated tau was associated with impairment of dynamic stability of microtubules which could be responsible for reduction of synaptic vesicles. In the PSD, truncated tau lowered the levels of neurofilaments. Truncated tau also significantly decreased the synaptic levels of Aβ40 but not Aβ42. These data show that truncated tau differentially deregulates synaptic proteome in pre- and postsynaptic compartments. Importantly, we show that alteration of Aβ can arise downstream of truncated tau pathology. PMID:25755633

  7. Volume-of-interest reconstruction from severely truncated data in dental cone-beam CT

    NASA Astrophysics Data System (ADS)

    Zhang, Zheng; Kusnoto, Budi; Han, Xiao; Sidky, E. Y.; Pan, Xiaochuan

    2015-03-01

    As cone-beam computed tomography (CBCT) has gained popularity rapidly in dental imaging applications in the past two decades, radiation dose in CBCT imaging remains a potential, health concern to the patients. It is a common practice in dental CBCT imaging that only a small volume of interest (VOI) containing the teeth of interest is illuminated, thus substantially lowering imaging radiation dose. However, this would yield data with severe truncations along both transverse and longitudinal directions. Although images within the VOI reconstructed from truncated data can be of some practical utility, they often are compromised significantly by truncation artifacts. In this work, we investigate optimization-based reconstruction algorithms for VOI image reconstruction from CBCT data of dental patients containing severe truncations. In an attempt to further reduce imaging dose, we also investigate optimization-based image reconstruction from severely truncated data collected at projection views substantially fewer than those used in clinical dental applications. Results of our study show that appropriately designed optimization-based reconstruction can yield VOI images with reduced truncation artifacts, and that, when reconstructing from only one half, or even one quarter, of clinical data, it can also produce VOI images comparable to that of clinical images.

  8. The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome

    PubMed Central

    McLaren, Paul J.; Mohammadi, Pejman; Tardaguila, Manuel; Chaturvedi, Nimisha; Fellay, Jacques; Telenti, Amalio

    2015-01-01

    Sequencing projects have identified large numbers of rare stop-gain and frameshift variants in the human genome. As most of these are observed in the heterozygous state, they test a gene’s tolerance to haploinsufficiency and dominant loss of function. We analyzed the distribution of truncating variants across 16,260 autosomal protein coding genes in 11,546 individuals. We observed 39,893 truncating variants affecting 12,062 genes, which significantly differed from an expectation of 12,916 genes under a model of neutral de novo mutation (p<10−4). Extrapolating this to increasing numbers of sequenced individuals, we estimate that 10.8% of human genes do not tolerate heterozygous truncating variants. An additional 10 to 15% of truncated genes may be rescued by incomplete penetrance or compensatory mutations, or because the truncating variants are of limited functional impact. The study of protein truncating variants delineates the essential genome and, more generally, identifies rare heterozygous variants as an unexplored source of diversity of phenotypic traits and diseases. PMID:26642228

  9. Semiparametric likelihood inference for left-truncated and right-censored data.

    PubMed

    Huang, Chiung-Yu; Ning, Jing; Qin, Jing

    2015-10-01

    This paper proposes a new estimation procedure for the survival time distribution with left-truncated and right-censored data, where the distribution of the truncation time is known up to a finite-dimensional parameter vector. The paper expands on the Vardis multiplicative censoring model (Vardi, 1989. Multiplicative censoring, renewal processes, deconvolution and decreasing density: non-parametric estimation. Biometrika 76: , 751-761), establishes the connection between the likelihood under a generalized multiplicative censoring model and that for left-truncated and right-censored survival time data, and derives an Expectation-Maximization algorithm for model estimation. A formal test for checking the truncation time distribution is constructed based on the semiparametric likelihood ratio test statistic. In particular, testing the stationarity assumption that the underlying truncation time is uniformly distributed is performed by embedding the null uniform truncation time distribution in a smooth alternative (Neyman, 1937. Smooth test for goodness of fit. Skandinavisk Aktuarietidskrift 20: , 150-199). Asymptotic properties of the proposed estimator are established. Simulations are performed to evaluate the finite-sample performance of the proposed methods. The methods and theories are illustrated by analyzing the Canadian Study of Health and Aging and the Channing House data, where the stationarity assumption with respect to disease incidence holds for the former but not the latter. PMID:25796430

  10. A Place for Block Play.

    ERIC Educational Resources Information Center

    Moore, Gary T.

    1997-01-01

    Discusses the importance of block play--including its contributions to perceptual, fine motor, and cognitive development--and components of a good preschool block play area. Recommends unit blocks complemented by stacking blocks, toys, beads, cubes, and Brio wooden toys. Makes recommendations for space, size, locations and connections to other…

  11. 2000 CENSUS BLOCK BOUNDARIES

    EPA Science Inventory

    This data set is a polygon shapefile of the boundaries of Census Blocks in New England derived from U.S. Census Bureau 2000 TIGER/Line data. Numerous attributes pertaining to population are included. TIGER, TIGER/Line, and Census TIGER are registered trademarks of the Bureau o...

  12. Confinement of block copolymers

    SciTech Connect

    1995-12-31

    The following were studied: confinement of block copolymers, free surface confinement, effects of substrate interactions, random copolymers at homopolymer interfaces, phase separation in thin film polymer mixtures, buffing of polymer surfaces, and near edge x-ray absorption fine structure spectroscopy.

  13. A Fluid Block Schedule

    ERIC Educational Resources Information Center

    Ubben, Gerald C.

    1976-01-01

    Achieving flexibility without losing student accountability is a challenge that faces every school. With a fluid block schedule, as described here, accountability is maintained without inhibiting flexibility. An additional advantage is that three levels of schedule decision making take some of the pressure off the principal. (Editor)

  14. Ischemic Nerve Block.

    ERIC Educational Resources Information Center

    Williams, Ian D.

    This experiment investigated the capability for movement and muscle spindle function at successive stages during the development of ischemic nerve block (INB) by pressure cuff. Two male subjects were observed under six randomly ordered conditions. The duration of index finger oscillation to exhaustion, paced at 1.2Hz., was observed on separate…

  15. Spice Blocks Melanoma Growth

    ERIC Educational Resources Information Center

    Science Teacher, 2005

    2005-01-01

    Curcumin, the pungent yellow spice found in both turmeric and curry powders, blocks a key biological pathway needed for development of melanoma and other cancers, according to a study that appears in the journal Cancer. Researchers from The University of Texas M. D. Anderson Cancer Center demonstrate how curcumin stops laboratory strains of…

  16. [Masquerading bundle branch block].

    PubMed

    Kukla, Piotr; Baranchuk, Adrian; Jastrzębski, Marek; Bryniarski, Leszek

    2014-01-01

    We here describe a surface 12-lead electrocardiogram (ECG) of a 72-year-old female with a prior history of breast cancer and chemotherapy-induced cardiomyopathy. An echocardiogram revealed left ventricular dysfunction, ejection fraction of 23%, with mild enlarged left ventricle. The 12-lead ECG showed atrial fibrillation with a mean heart rate of about 100 bpm, QRS duration 160 ms, QT interval 400 ms, right bundle branch block (RBBB) and left anterior fascicular block (LAFB). The combination of RBBB features in the precordial leads and LAFB features in the limb leads is known as ''masquerading bundle branch block''. In most cases of RBBB and LAFB, the QRS axis deviation is located between - 80 to -120 degrees. Rarely, when predominant left ventricular forces are present, the QRS axis deviation is near about -90 degrees, turning the pattern into an atypical form. In a situation of RBBB associated with LAFB, the S wave can be absent or very small in lead I. Such a situation is the result of not only purely LAFB but also with left ventricular hypertrophy and/or focal block due to scar (extensive anterior myocardial infarction) or fibrosis (cardiomyopathy). Sometimes, this specific ECG pattern is mistaken for LBBB. RBBB with LAFB may imitate LBBB either in the limb leads (known as 'standard masquerading' - absence of S wave in lead I), or in the precordial leads (called 'precordial masquerading' - absence of S wave in leads V₅ and V₆). Our ECG showed both these types of masquerading bundle branch block - absence of S wave in lead I and in leads V₅ and V₆. PMID:24469750

  17. Parallel Adaptive Mesh Refinement Library

    NASA Technical Reports Server (NTRS)

    Mac-Neice, Peter; Olson, Kevin

    2005-01-01

    Parallel Adaptive Mesh Refinement Library (PARAMESH) is a package of Fortran 90 subroutines designed to provide a computer programmer with an easy route to extension of (1) a previously written serial code that uses a logically Cartesian structured mesh into (2) a parallel code with adaptive mesh refinement (AMR). Alternatively, in its simplest use, and with minimal effort, PARAMESH can operate as a domain-decomposition tool for users who want to parallelize their serial codes but who do not wish to utilize adaptivity. The package builds a hierarchy of sub-grids to cover the computational domain of a given application program, with spatial resolution varying to satisfy the demands of the application. The sub-grid blocks form the nodes of a tree data structure (a quad-tree in two or an oct-tree in three dimensions). Each grid block has a logically Cartesian mesh. The package supports one-, two- and three-dimensional models.

  18. Orbital Architectures of Planet-hosting Binaries. I. Forming Five Small Planets in the Truncated Disk of Kepler-444A

    NASA Astrophysics Data System (ADS)

    Dupuy, Trent J.; Kratter, Kaitlin M.; Kraus, Adam L.; Isaacson, Howard; Mann, Andrew W.; Ireland, Michael J.; Howard, Andrew W.; Huber, Daniel

    2016-01-01

    We present the first results from our Keck program investigating the orbital architectures of planet-hosting multiple star systems. Kepler-444 is a metal-poor triple star system that hosts five sub-Earth-sized planets orbiting the primary star (Kepler-444A), as well as a spatially unresolved pair of M dwarfs (Kepler-444BC) at a projected distance of 1\\buildrel{\\prime\\prime}\\over{.} 8 (66 AU). We combine our Keck/NIRC2 adaptive optics astrometry with multi-epoch Keck/HIRES RVs of all three stars to determine a precise orbit for the BC pair around A, given their empirically constrained masses. We measure minimal astrometric motion (1.0 ± 0.6 mas yr-1, or 0.17 ± 0.10 km s-1), but our RVs reveal significant orbital velocity (1.7 ± 0.2 km s-1) and acceleration (7.8 ± 0.5 m s-1 yr-1). We determine a highly eccentric stellar orbit (e=0.864+/- 0.023) that brings the tight M dwarf pair within {5.0}-1.0+0.9 AU of the planetary system. We validate that the system is dynamically stable in its present configuration via n-body simulations. We find that the A-BC orbit and planetary orbits are likely aligned (98%) given that they both have edge-on orbits and misalignment induces precession of the planets out of transit. We conclude that the stars were likely on their current orbits during the epoch of planet formation, truncating the protoplanetary disk at ≈2 AU. This truncated disk would have been severely depleted of solid material from which to form the total ≈1.5 M⊕ of planets. We thereby strongly constrain the efficiency of the conversion of dust into planets and suggest that the Kepler-444 system is consistent with models that explain the formation of most close-in Kepler planets in more typical, not truncated, disks. Data presented herein were obtained at the W. M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California, and the National Aeronautics and Space Administration. The

  19. Adaptive SPECT

    PubMed Central

    Barrett, Harrison H.; Furenlid, Lars R.; Freed, Melanie; Hesterman, Jacob Y.; Kupinski, Matthew A.; Clarkson, Eric; Whitaker, Meredith K.

    2008-01-01

    Adaptive imaging systems alter their data-acquisition configuration or protocol in response to the image information received. An adaptive pinhole single-photon emission computed tomography (SPECT) system might acquire an initial scout image to obtain preliminary information about the radiotracer distribution and then adjust the configuration or sizes of the pinholes, the magnifications, or the projection angles in order to improve performance. This paper briefly describes two small-animal SPECT systems that allow this flexibility and then presents a framework for evaluating adaptive systems in general, and adaptive SPECT systems in particular. The evaluation is in terms of the performance of linear observers on detection or estimation tasks. Expressions are derived for the ideal linear (Hotelling) observer and the ideal linear (Wiener) estimator with adaptive imaging. Detailed expressions for the performance figures of merit are given, and possible adaptation rules are discussed. PMID:18541485

  20. An intelligent approach to machine component health prognostics by utilizing only truncated histories

    NASA Astrophysics Data System (ADS)

    Lu, Chen; Tao, Laifa; Fan, Huanzhen

    2014-01-01

    Numerous techniques and methods have been proposed to reduce the production downtime, spare-part inventory, maintenance cost, and safety hazards of machineries and equipment. Prognostics are regarded as a significant and promising tool for achieving these benefits for machine maintenance. However, prognostic models, particularly probabilistic-based methods, require a large number of failure instances. In practice, engineering assets are rarely being permitted to run to failure. Many studies have reported valuable models and methods that engage in maximizing both truncated and failure data. However, limited studies have focused on cases where only truncated data are available, which is common in machine condition monitoring. Therefore, this study develops an intelligent machine component prognostics system by utilizing only truncated histories. First, the truncated Minimum Quantization Error (MQE) histories were obtained by Self-organizing Map network after feature extraction. The chaos-based parallel multilayer perceptron network and polynomial fitting for residual errors were adopted to generate the predicted MQEs and failure times following the truncation times. The feed-forward neural network (FFNN) was trained with inputs both from the truncated MQE histories and from the predicted MQEs. The target vectors of survival probabilities were estimated by intelligent product limit estimator using the truncation times and generated failure times. After validation, the FFNN was applied to predict the machine component health of individual units. To validate the proposed method, two cases were considered by using the degradation data generated by bearing testing rig. Results demonstrate that the proposed method is a promising intelligent prognostics approach for machine component health.

  1. The Effects of Solute Breakthrough Curve Tail Truncation on Residence Time Estimates and Mass Recovery

    NASA Astrophysics Data System (ADS)

    Drummond, J. D.; Covino, T. P.; Aubeneau, A. F.; Patil, S.; Leong, D. N.; Ran, L.; Packman, A. I.; Schumer, R.

    2010-12-01

    Solute transport and hydrologic retention strongly affect biogeochemical processes that are critical to stream ecosystems. Tracer injections are used to characterize solute transport and storage in stream reaches, but the range of processes accurately resolved using this approach is not clear. The solute residence time distribution (RTD) depends on both in-stream mixing and exchange with the hyporheic zone. For shorter residence times, in-stream breakthrough curves (BTCs) can be modeled well with the classical advection-dispersion equation, whereas longer RTDs produce highly skewed in-stream BTCs for which traditional solute models are inappropriate. Observed BTCs have most commonly been modeled with in-stream advection-dispersion plus an exponential RTD, but process-based models suggest that hyporheic retention extends to much longer times and a power-law RTD is more appropriate. We synthesized results from a variety of tracer-injection studies to investigate how experimental design and tracer sensitivity influence the interpretation of tailing behavior and RTDs. We found that BTC tails are often not well observed in stream tracer experiments. The two main reasons for this are: 1) experimental truncation, which occurs when sampling ends before all tracer mass reaches the sampling location, and 2) sensitivity truncation, when tracer concentrations in the tail are too low to be detected reliably above background levels. Continuous Time Random Walk (CTRW) theory was used to determine the effects of tail truncation on tracer mass recovery and tailing behavior. Tail truncation due to both experimental and sensitivity truncation decreased mass recovery and obscured assessment of BTC tailing. Failure to consider tail truncation leads to underestimation of the retention of solutes in the streambed and subsurface (i.e., transient storage). Based on these findings, we propose criteria for stream tracer experiments to minimize tail truncation and improve inverse modeling of

  2. Adaptive Algebraic Smoothers

    SciTech Connect

    Philip, Bobby; Chartier, Dr Timothy

    2012-01-01

    methods based on Local Sensitivity Analysis (LSA). The method can be used in the context of geometric and algebraic multigrid methods for constructing smoothers, and in the context of Krylov methods for constructing block preconditioners. It is suitable for both constant and variable coecient problems. Furthermore, the method can be applied to systems arising from both scalar and coupled system partial differential equations (PDEs), as well as linear systems that do not arise from PDEs. The simplicity of the method will allow it to be easily incorporated into existing multigrid and Krylov solvers while providing a powerful tool for adaptively constructing methods tuned to a problem.

  3. NCCN Evidence Blocks.

    PubMed

    Carlson, Robert W; Jonasch, Eric

    2016-05-01

    NCCN has developed a series of Evidence Blocks: graphics that provide ratings for each recommended treatment regimen in terms of efficacy, toxicity, quality and consistency of the supporting data, and affordability. The NCCN Evidence Blocks are currently available in 10 tumor types within the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines). At a glance, patients and providers can understand how a given treatment was assessed by the NCCN Guidelines Panel and get a sense of how a given treatment may match individual needs and preferences. Robert W. Carlson, MD, CEO of NCCN, described the reasoning behind this new feature and how the tool is used, and Eric Jonasch, MD, Professor of Genitourinary Medical Oncology at The University of Texas MD Anderson Cancer Center, and Vice Chair of the NCCN Kidney Cancer Panel, described its applicability in the management of metastatic renal cell carcinoma. PMID:27226499

  4. Adaptive sensor fusion

    NASA Astrophysics Data System (ADS)

    Kadar, Ivan

    1995-07-01

    A perceptual reasoning system adaptively extracting, associating, and fusing information from multiple sources, at various levels of abstraction, is considered as the building block for the next generation of surveillance systems. A system architecture is presented which makes use of both centralized and distributed predetection fusion combined with intelligent monitor and control coupling both on-platform and off-board track and decision level fusion results. The goal of this system is to create a `gestalt fused sensor system' whose information product is greater than the sum of the information products from the individual sensors and has performance superior to either individual or a sub-group of combined sensors. The application of this architectural concept to the law enforcement arena (e.g. drug interdiction) utilizing multiple spatially and temporally diverse surveillance platforms and/or information sources, is used to illustrate the benefits of the adaptive perceptual reasoning system concept.

  5. Intraocular radiation blocking

    SciTech Connect

    Finger, P.T.; Ho, T.K.; Fastenberg, D.M.; Hyman, R.A.; Stroh, E.M.; Packer, S.; Perry, H.D. )

    1990-09-01

    Iodine-based liquid radiographic contrast agents were placed in normal and tumor-bearing (Greene strain) rabbit eyes to evaluate their ability to block iodine-125 radiation. This experiment required the procedures of tumor implantation, vitrectomy, air-fluid exchange, and 125I plaque and thermoluminescent dosimetry (TLD) chip implantation. The authors quantified the amount of radiation attenuation provided by intraocularly placed contrast agents with in vivo dosimetry. After intraocular insertion of a blocking agent or sham blocker (saline) insertion, episcleral 125I plaques were placed across the eye from episcleral TLD dosimeters. This showed that radiation attenuation occurred after blocker insertion compared with the saline controls. Then computed tomographic imaging techniques were used to describe the relatively rapid transit time of the aqueous-based iohexol compared with the slow transit time of the oil-like iophendylate. Lastly, seven nontumor-bearing eyes were primarily examined for blocking agent-related ocular toxicity. Although it was noted that iophendylate induced intraocular inflammation and retinal degeneration, all iohexol-treated eyes were similar to the control eyes at 7 and 31 days of follow-up. Although our study suggests that intraocular radiopaque materials can be used to shield normal ocular structures during 125I plaque irradiation, a mechanism to keep these materials from exiting the eye must be devised before clinical application.

  6. Block 3. This photograph depicts the northern view of Block ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Block 3. This photograph depicts the northern view of Block 2 towards the May D & F Tower from the main path along the western facades - Skyline Park, 1500-1800 Arapaho Street, Denver, Denver County, CO

  7. Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells

    SciTech Connect

    Barua, Dipak; Hlavacek, William S.

    2013-09-26

    In colorectal cancer cells, APC, a tumor suppressor protein, is commonly expressed in truncated form. Truncation of APC is believed to disrupt degradation of β—catenin, which is regulated by a multiprotein complex called the destruction complex. The destruction complex comprises APC, Axin, β—catenin, serine/threonine kinases, and other proteins. The kinases CK1α and GSK–3β, which are recruited by Axin, mediate phosphorylation of β—catenin, which initiates its ubiquitination and proteosomal degradation. The mechanism of regulation of β—catenin degradation by the destruction complex and the role of truncation of APC in colorectal cancer are not entirely understood. Through formulation and analysis of a rule-based computational model, we investigated the regulation of β—catenin phosphorylation and degradation by APC and the effect of APC truncation on function of the destruction complex. The model integrates available mechanistic knowledge about site-specific interactions and phosphorylation of destruction complex components and is consistent with an array of published data. In this paper, we find that the phosphorylated truncated form of APC can outcompete Axin for binding to β—catenin, provided that Axin is limiting, and thereby sequester β—catenin away from Axin and the Axin-recruited kinases CK1α and GSK–3β. Full-length APC also competes with Axin for binding to β—catenin; however, full-length APC is able, through its SAMP repeats, which bind Axin and which are missing in truncated oncogenic forms of APC, to bring β—catenin into indirect association with Axin and Axin-recruited kinases. Because our model indicates that the positive effects of truncated APC on β—catenin levels depend on phosphorylation of APC, at the first 20-amino acid repeat, and because phosphorylation of this site is mediated by CK1ϵ, we suggest that CK1ϵ is a potential target for therapeutic intervention in colorectal cancer. Finally, specific inhibition

  8. Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells

    DOE PAGESBeta

    Barua, Dipak; Hlavacek, William S.

    2013-09-26

    In colorectal cancer cells, APC, a tumor suppressor protein, is commonly expressed in truncated form. Truncation of APC is believed to disrupt degradation of β—catenin, which is regulated by a multiprotein complex called the destruction complex. The destruction complex comprises APC, Axin, β—catenin, serine/threonine kinases, and other proteins. The kinases CK1α and GSK–3β, which are recruited by Axin, mediate phosphorylation of β—catenin, which initiates its ubiquitination and proteosomal degradation. The mechanism of regulation of β—catenin degradation by the destruction complex and the role of truncation of APC in colorectal cancer are not entirely understood. Through formulation and analysis of amore » rule-based computational model, we investigated the regulation of β—catenin phosphorylation and degradation by APC and the effect of APC truncation on function of the destruction complex. The model integrates available mechanistic knowledge about site-specific interactions and phosphorylation of destruction complex components and is consistent with an array of published data. In this paper, we find that the phosphorylated truncated form of APC can outcompete Axin for binding to β—catenin, provided that Axin is limiting, and thereby sequester β—catenin away from Axin and the Axin-recruited kinases CK1α and GSK–3β. Full-length APC also competes with Axin for binding to β—catenin; however, full-length APC is able, through its SAMP repeats, which bind Axin and which are missing in truncated oncogenic forms of APC, to bring β—catenin into indirect association with Axin and Axin-recruited kinases. Because our model indicates that the positive effects of truncated APC on β—catenin levels depend on phosphorylation of APC, at the first 20-amino acid repeat, and because phosphorylation of this site is mediated by CK1ϵ, we suggest that CK1ϵ is a potential target for therapeutic intervention in colorectal cancer. Finally, specific

  9. Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells.

    PubMed

    Barua, Dipak; Hlavacek, William S

    2013-01-01

    In colorectal cancer cells, APC, a tumor suppressor protein, is commonly expressed in truncated form. Truncation of APC is believed to disrupt degradation of β-catenin, which is regulated by a multiprotein complex called the destruction complex. The destruction complex comprises APC, Axin, β-catenin, serine/threonine kinases, and other proteins. The kinases CK1α and GSK -3β, which are recruited by Axin, mediate phosphorylation of β-catenin, which initiates its ubiquitination and proteosomal degradation. The mechanism of regulation of β-catenin degradation by the destruction complex and the role of truncation of APC in colorectal cancer are not entirely understood. Through formulation and analysis of a rule-based computational model, we investigated the regulation of β-catenin phosphorylation and degradation by APC and the effect of APC truncation on function of the destruction complex. The model integrates available mechanistic knowledge about site-specific interactions and phosphorylation of destruction complex components and is consistent with an array of published data. We find that the phosphorylated truncated form of APC can outcompete Axin for binding to β-catenin, provided that Axin is limiting, and thereby sequester β-catenin away from Axin and the Axin-recruited kinases CK1α and GSK -3β. Full-length APC also competes with Axin for binding to β-catenin; however, full-length APC is able, through its SAMP repeats, which bind Axin and which are missing in truncated oncogenic forms of APC, to bring β-catenin into indirect association with Axin and Axin-recruited kinases. Because our model indicates that the positive effects of truncated APC on β-catenin levels depend on phosphorylation of APC, at the first 20-amino acid repeat, and because phosphorylation of this site is mediated by CK1ε, we suggest that CK1ε is a potential target for therapeutic intervention in colorectal cancer. Specific inhibition of CK1ε is predicted to limit binding of

  10. A one-time truncate and encode multiresolution stochastic framework

    SciTech Connect

    Abgrall, R.; Congedo, P.M.; Geraci, G.

    2014-01-15

    In this work a novel adaptive strategy for stochastic problems, inspired from the classical Harten's framework, is presented. The proposed algorithm allows building, in a very general manner, stochastic numerical schemes starting from a whatever type of deterministic schemes and handling a large class of problems, from unsteady to discontinuous solutions. Its formulations permits to recover the same results concerning the interpolation theory of the classical multiresolution approach, but with an extension to uncertainty quantification problems. The present strategy permits to build numerical scheme with a higher accuracy with respect to other classical uncertainty quantification techniques, but with a strong reduction of the numerical cost and memory requirements. Moreover, the flexibility of the proposed approach allows to employ any kind of probability density function, even discontinuous and time varying, without introducing further complications in the algorithm. The advantages of the present strategy are demonstrated by performing several numerical problems where different forms of uncertainty distributions are taken into account, such as discontinuous and unsteady custom-defined probability density functions. In addition to algebraic and ordinary differential equations, numerical results for the challenging 1D Kraichnan–Orszag are reported in terms of accuracy and convergence. Finally, a two degree-of-freedom aeroelastic model for a subsonic case is presented. Though quite simple, the model allows recovering some physical key aspect, on the fluid/structure interaction, thanks to the quasi-steady aerodynamic approximation employed. The injection of an uncertainty is chosen in order to obtain a complete parameterization of the mass matrix. All the numerical results are compared with respect to classical Monte Carlo solution and with a non-intrusive Polynomial Chaos method.

  11. Analytic reconstruction algorithms for triple-source CT with horizontal data truncation

    SciTech Connect

    Chen, Ming; Yu, Hengyong

    2015-10-15

    Purpose: This paper explores a triple-source imaging method with horizontal data truncation to enlarge the field of view (FOV) for big objects. Methods: The study is conducted by using theoretical analysis, mathematical deduction, and numerical simulations. The proposed algorithms are implemented in c + + and MATLAB. While the basic platform is constructed in MATLAB, the computationally intensive segments are coded in c + +, which are linked via a MEX interface. Results: A triple-source circular scanning configuration with horizontal data truncation is developed, where three pairs of x-ray sources and detectors are unevenly distributed on the same circle to cover the whole imaging object. For this triple-source configuration, a fan-beam filtered backprojection-type algorithm is derived for truncated full-scan projections without data rebinning. The algorithm is also extended for horizontally truncated half-scan projections and cone-beam projections in a Feldkamp-type framework. Using their method, the FOV is enlarged twofold to threefold to scan bigger objects with high speed and quality. The numerical simulation results confirm the correctness and effectiveness of the developed algorithms. Conclusions: The triple-source scanning configuration with horizontal data truncation cannot only keep most of the advantages of a traditional multisource system but also cover a larger FOV for big imaging objects. In addition, because the filtering is shift-invariant, the proposed algorithms are very fast and easily parallelized on graphic processing units.

  12. Comparing estimation approaches for the illness-death model under left truncation and right censoring.

    PubMed

    Vakulenko-Lagun, Bella; Mandel, Micha

    2016-04-30

    Left-truncated data arise when lifetimes are observed only if they are larger than independent truncation times. For example, in a cross-sectional sampling, only individuals who live long enough to be present on the sampling day are observed. There are several ways to perform statistical inference under this setting. One can do the following: (i) use an unconditional approach, (ii) condition on the value of the truncation variable, or (iii) condition on all the history up to the time of truncation. The latter two approaches are equivalent when analyzing univariate survival outcomes but differ under the multi-state framework. In this paper, we consider the illness-death model and compare between the three estimation approaches in a parametric regression framework. We show that approach (ii) is more efficient than the standard approach (iii), although it requires more computational effort. Approach (i) is the most efficient approach, but it requires knowledge on the distribution of the truncation variable and hence is less robust. The methods are compared using a theoretical example and simulations and are applied to intensive care units data collected in a cross-sectional design, where the illness state corresponds to a bloodstream infection. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26553433

  13. EFFECT OF DATA TRUNCATION IN AN IMPLEMENTATION OF PIXEL CLUSTERING ON A CUSTOM COMPUTING MACHINE

    SciTech Connect

    M. LEESER; J. THEILER; ET AL

    2000-08-01

    We investigate the effect of truncating the precision of hyperspectral image data for the purpose of more efficiently segmenting the image using a variant of k-means clustering. We describe the implementation of the algorithm on field-programmable gate array (FPGA) hardware. Truncating the data to only a few bits per pixel in each spectral channel permits a more compact hardware design, enabling greater parallelism, and ultimately a more rapid execution. It also enables the storage of larger images in the onboard memory. In exchange for faster clustering, however, one trades off the quality of the produced segmentation. We find, however, that the clustering algorithm can tolerate considerable data truncation with little degradation in cluster quality. This robustness to truncated data can be extended by computing the cluster centers to a few more bits of precision than the data. Since there are so many more pixels than centers, the more aggressive data truncation leads to significant gains in the number of pixels that can be stored in memory and processed in hardware concurrently.

  14. Correction of data truncation artifacts in differential phase contrast (DPC) tomosynthesis imaging

    NASA Astrophysics Data System (ADS)

    Garrett, John; Ge, Yongshuai; Li, Ke; Chen, Guang-Hong

    2015-10-01

    The use of grating based Talbot-Lau interferometry permits the acquisition of differential phase contrast (DPC) imaging with a conventional medical x-ray source and detector. However, due to the limited area of the gratings, limited area of the detector, or both, data truncation image artifacts are often observed in tomographic DPC acquisitions and reconstructions, such as tomosynthesis (limited-angle tomography). When data are truncated in the conventional x-ray absorption tomosynthesis imaging, a variety of methods have been developed to mitigate the truncation artifacts. However, the same strategies used to mitigate absorption truncation artifacts do not yield satisfactory reconstruction results in DPC tomosynthesis reconstruction. In this work, several new methods have been proposed to mitigate data truncation artifacts in a DPC tomosynthesis system. The proposed methods have been validated using experimental data of a mammography accreditation phantom, a bovine udder, as well as several human cadaver breast specimens using a bench-top DPC imaging system at our facility.

  15. Truncation correction for VOI C-arm CT using scattered radiation

    NASA Astrophysics Data System (ADS)

    Bier, Bastian; Maier, Andreas; Hofmann, Hannes G.; Schwemmer, Chris; Xia, Yan; Struffert, Tobias; Hornegger, Joachim

    2013-03-01

    In C-arm computed tomography, patient dose reduction by volume-of-interest (VOI) imaging is of increasing interest for many clinical applications. A remaining limitation of VOI imaging is the truncation artifact when reconstructing a 3D volume. It can either be cupping towards the boundaries of the field-of-view (FOV) or an incorrect offset in the Hounsfield values of the reconstructed voxels. In this paper, we present a new method for correction of truncation artifacts in a collimated scan. When axial or lateral collimation are applied, scattered radiation still reaches the detector and is recorded outside of the FOV. If the full area of the detector is read out we can use this scattered signal to estimate the truncated part of the object. We apply three processing steps: detection of the collimator edge, adjustment of the area outside the FOV, and interpolation of the collimator edge. Compared to heuristic truncation correction methods we were able to reconstruct high contrast structures like bones outside of the FOV. Inside the FOV we achieved similar reconstruction results as with water cylinder truncation correction. These preliminary results indicate that scattered radiation outside the FOV can be used to improve image quality and further research in this direction seems beneficial.

  16. Double-step truncation procedure for large-scale shell-model calculations

    NASA Astrophysics Data System (ADS)

    Coraggio, L.; Gargano, A.; Itaco, N.

    2016-06-01

    We present a procedure that is helpful to reduce the computational complexity of large-scale shell-model calculations, by preserving as much as possible the role of the rejected degrees of freedom in an effective approach. Our truncation is driven first by the analysis of the effective single-particle energies of the original large-scale shell-model Hamiltonian, in order to locate the relevant degrees of freedom to describe a class of isotopes or isotones, namely the single-particle orbitals that will constitute a new truncated model space. The second step is to perform a unitary transformation of the original Hamiltonian from its model space into the truncated one. This transformation generates a new shell-model Hamiltonian, defined in a smaller model space, that retains effectively the role of the excluded single-particle orbitals. As an application of this procedure, we have chosen a realistic shell-model Hamiltonian defined in a large model space, set up by seven proton and five neutron single-particle orbitals outside 88Sr. We study the dependence of shell-model results upon different truncations of the original model space for the Zr, Mo, Ru, Pd, Cd, and Sn isotopic chains, showing the reliability of this truncation procedure.

  17. A test of truncation in the accretion discs of X-ray Binaries.

    NASA Astrophysics Data System (ADS)

    Eckersall, A.

    2016-06-01

    The truncated-disc model is generally used to help explain the change between the soft and hard states in X-ray Binaries, where the standard accretion disc is truncated in the inner regions and replaced by a radiatively inefficient accretion flow. There is still disagreement though in the extent of this truncation, particularly in at what point truncation begins. Here we analyze XMM EPIC-pn spectra in both the soft and hard states for a number of galactic XRBs, along with RGS data and the latest absorption and emission models to get an independent fit for the ISM column densities for each source. Specifically, we assume the 'canonical' model where the luminous accretion disc extends down to the innermost stable orbit at 6r_g, and construct a spectral model accounting for thermal, reflection and Compton processes ensuring consistent geometrical properties of the models. Rather than attempting to infer the inner disc location from spectral fitting and/or reflection models, we instead attempt a direct test of whether a consistent model will fit assuming no truncation. We discuss the implications for emission models of XRBs.

  18. Self-truncation and scaling in Euler-Voigt-α and related fluid models.

    PubMed

    Di Molfetta, Giuseppe; Krstlulovic, Giorgio; Brachet, Marc

    2015-07-01

    A generalization of the 3D Euler-Voigt-α model is obtained by introducing derivatives of arbitrary order β (instead of 2) in the Helmholtz operator. The β→∞ limit is shown to correspond to Galerkin truncation of the Euler equation. Direct numerical simulations (DNS) of the model are performed with resolutions up to 2048(3) and Taylor-Green initial data. DNS performed at large β demonstrate that this simple classical hydrodynamical model presents a self-truncation behavior, similar to that previously observed for the Gross-Pitaeveskii equation in Krstulovic and Brachet [Phys. Rev. Lett. 106, 115303 (2011)]. The self-truncation regime of the generalized model is shown to reproduce the behavior of the truncated Euler equation demonstrated in Cichowlas et al. [Phys. Rev. Lett. 95, 264502 (2005)]. The long-time growth of the self-truncation wave number k(st) appears to be self-similar. Two related α-Voigt versions of the eddy-damped quasinormal Markovian model and the Leith model are introduced. These simplified theoretical models are shown to reasonably reproduce intermediate time DNS results. The values of the self-similar exponents of these models are found analytically. PMID:26274282

  19. Self-truncation and scaling in Euler-Voigt-α and related fluid models

    NASA Astrophysics Data System (ADS)

    Di Molfetta, Giuseppe; Krstlulovic, Giorgio; Brachet, Marc

    2015-07-01

    A generalization of the 3D Euler-Voigt-α model is obtained by introducing derivatives of arbitrary order β (instead of 2) in the Helmholtz operator. The β →∞ limit is shown to correspond to Galerkin truncation of the Euler equation. Direct numerical simulations (DNS) of the model are performed with resolutions up to 20483 and Taylor-Green initial data. DNS performed at large β demonstrate that this simple classical hydrodynamical model presents a self-truncation behavior, similar to that previously observed for the Gross-Pitaeveskii equation in Krstulovic and Brachet [Phys. Rev. Lett. 106, 115303 (2011), 10.1103/PhysRevLett.106.115303]. The self-truncation regime of the generalized model is shown to reproduce the behavior of the truncated Euler equation demonstrated in Cichowlas et al. [Phys. Rev. Lett. 95, 264502 (2005), 10.1103/PhysRevLett.95.264502]. The long-time growth of the self-truncation wave number kst appears to be self-similar. Two related α -Voigt versions of the eddy-damped quasinormal Markovian model and the Leith model are introduced. These simplified theoretical models are shown to reasonably reproduce intermediate time DNS results. The values of the self-similar exponents of these models are found analytically.

  20. Discussion on the influence of truncation of ground motion residual distribution on probabilistic seismic hazard assessment

    NASA Astrophysics Data System (ADS)

    Wu, Jian; Gao, Mengtan; Chen, Kun; Huang, Bei

    2011-09-01

    Recent studies on assessment of a very low annual probability of exceeding (APE) ground motions, 10-4 or less, have highlighted the importance of the upper bound of ground motions when very low probability results are acquired. The truncation level adopted in probabilistic seismic hazard analysis (PSHA) should be determined by an aleatory uncertainty model (i.e., distribution model) of ground motions and the possible maximum and minimum ground motion values of a specific earthquake. However, at the present time, it is impossible to establish the upper bound model for ground motions based on the source characteristics and/or ground motion propagation. McGuire suggested a truncation level be fixed at a number of ɛ = 6, or the distribution of residuals be truncated in such a manner that site intensity cannot be greater than the epicenter intensity. This study aims to find a reasonable and feasible truncation level to be used in PSHA when the physical mechanism is not available to find the extreme ground motion. A mathematical analysis of the influence of the truncation level on PSHA, case studies of sites in different seismotectonic settings, and a distribution analysis of ground motion residuals are conducted in this study. It is concluded that ɛ = 4 is the minimum acceptable value for engineering applications for APEs within 0.002 to 10-4, and for low APEs, such as 10-5 and 10-6, the value of ɛ should be no less than 5 in most regions of China.

  1. Novel mutations of APOB cause ApoB truncations undetectable in plasma and familial hypobetalipoproteinemia.

    PubMed

    Yue, Pin; Yuan, Bo; Gerhard, Daniela S; Neuman, Rosalind J; Isley, William L; Harris, William S; Schonfeld, Gustav

    2002-08-01

    Familial hypobetalipoproteinemia (FHBL) is a genetic disorder characterized by low levels of apoB-100 and LDL cholesterol. Truncation-producing mutations of apoB (chromosome 2) are among several potential causes of FHBL in patients. Ten new families with FHBL linked to chromosome 2 were identified. In Family 8, a 4432delT in exon 26 produces a frame-shift and a premature stop codon predicted to produce a truncated apoB-30.9. Even though this truncation is just 10 amino acid shorter than the well-documented apoB-31, which is readily detectable in plasma, apoB-30.9 is undetectable. Most truncations shorter than apoB-30 are not detectable in plasma. In Family 34, an acceptor splicing mutation at position -1 of exon 14 changes the acceptor splice site AG to AA. Two families (Family 50 and 52) had mutations (apoB-9 and apoB-29) reported previously. In Family 98, a novel point mutation in exon 26 (11163T>G) causes a premature stop codon, and produces a truncated apoB-80.5 readily detectable in plasma. Sequencing of the ApoB gene in families 1, 5, 18, 58, and 59 did not reveal mutations. PMID:12124991

  2. Lytic Action of the Truncated yncE Gene in Escherichia coli.

    PubMed

    Li, Jianhua; Xiong, Kun; Zou, Lingyun; Chen, Zhijin; Wang, Yiran; Hu, Xiaomei; Rao, Xiancai; Cong, Yanguang

    2016-04-01

    We recently found lytic action of the truncated yncE gene. When the truncated yncE gene of Salmonella enterica serovar Paratyphi A was expressed in Escherichia coli DH5α under the control of the Ara promoter, bacterial growth was markedly inhibited. In the present study, we characterized this lytic action. The N-terminal 103 aa of YncE, containing a signal peptide, was demonstrated to be essential for inhibition. Microscopic observation showed that the bacterial envelope of E. coli was damaged by the expression of truncated yncE, resulting in the release of cytoplasmic content and the formation of bacterial ghosts. The addition of MgSO4 or spermine, which is the stabilizer of bacterial membrane structure, dramatically reversed the cell lysis induced by the toxic truncated YncE. In contrast, the lytic action was significantly enhanced by the addition of SDS or EDTA. Our data indicated that the toxic truncated YncE could cause cell lysis by the disruption of the bacterial membrane. PMID:26687463

  3. Methods to mitigate data truncation artifacts in multi-contrast tomosynthesis image reconstructions

    NASA Astrophysics Data System (ADS)

    Garrett, John; Ge, Yongshuai; Li, Ke; Chen, Guang-Hong

    2015-03-01

    Differential phase contrast imaging is a promising new image modality that utilizes the refraction rather than the absorption of x-rays to image an object. A Talbot-Lau interferometer may be used to permit differential phase contrast imaging with a conventional medical x-ray source and detector. However, the current size of the gratings fabricated for these interferometers are often relatively small. As a result, data truncation image artifacts are often observed in a tomographic acquisition and reconstruction. When data are truncated in x-ray absorption imaging, the methods have been introduced to mitigate the truncation artifacts. However, the same strategy to mitigate absorption truncation artifacts may not be appropriate for differential phase contrast or dark field tomographic imaging. In this work, several new methods to mitigate data truncation artifacts in a multi-contrast imaging system have been proposed and evaluated for tomosynthesis data acquisitions. The proposed methods were validated using experimental data acquired for a bovine udder as well as several cadaver breast specimens using a benchtop system at our facility.

  4. Correction of data truncation artifacts in differential phase contrast (DPC) tomosynthesis imaging.

    PubMed

    Garrett, John; Ge, Yongshuai; Li, Ke; Chen, Guang-Hong

    2015-10-01

    The use of grating based Talbot-Lau interferometry permits the acquisition of differential phase contrast (DPC) imaging with a conventional medical x-ray source and detector. However, due to the limited area of the gratings, limited area of the detector, or both, data truncation image artifacts are often observed in tomographic DPC acquisitions and reconstructions, such as tomosynthesis (limited-angle tomography). When data are truncated in the conventional x-ray absorption tomosynthesis imaging, a variety of methods have been developed to mitigate the truncation artifacts. However, the same strategies used to mitigate absorption truncation artifacts do not yield satisfactory reconstruction results in DPC tomosynthesis reconstruction. In this work,several new methods have been proposed to mitigate data truncation artifacts in a DPC tomosynthesis system. The proposed methods have been validated using experimental data of a mammography accreditation phantom, a bovine udder, as well as several human cadaver breast specimens using a bench-top DPC imaging system at our facility. PMID:26394181

  5. Adaptive grid methods for RLV environment assessment and nozzle analysis

    NASA Technical Reports Server (NTRS)

    Thornburg, Hugh J.

    1996-01-01

    Rapid access to highly accurate data about complex configurations is needed for multi-disciplinary optimization and design. In order to efficiently meet these requirements a closer coupling between the analysis algorithms and the discretization process is needed. In some cases, such as free surface, temporally varying geometries, and fluid structure interaction, the need is unavoidable. In other cases the need is to rapidly generate and modify high quality grids. Techniques such as unstructured and/or solution-adaptive methods can be used to speed the grid generation process and to automatically cluster mesh points in regions of interest. Global features of the flow can be significantly affected by isolated regions of inadequately resolved flow. These regions may not exhibit high gradients and can be difficult to detect. Thus excessive resolution in certain regions does not necessarily increase the accuracy of the overall solution. Several approaches have been employed for both structured and unstructured grid adaption. The most widely used involve grid point redistribution, local grid point enrichment/derefinement or local modification of the actual flow solver. However, the success of any one of these methods ultimately depends on the feature detection algorithm used to determine solution domain regions which require a fine mesh for their accurate representation. Typically, weight functions are constructed to mimic the local truncation error and may require substantial user input. Most problems of engineering interest involve multi-block grids and widely disparate length scales. Hence, it is desirable that the adaptive grid feature detection algorithm be developed to recognize flow structures of different type as well as differing intensity, and adequately address scaling and normalization across blocks. These weight functions can then be used to construct blending functions for algebraic redistribution, interpolation functions for unstructured grid generation

  6. Blocking in Category Learning

    ERIC Educational Resources Information Center

    Bott, Lewis; Hoffman, Aaron B.; Murphy, Gregory L.

    2007-01-01

    Many theories of category learning assume that learning is driven by a need to minimize classification error. When there is no classification error, therefore, learning of individual features should be negligible. The authors tested this hypothesis by conducting three category-learning experiments adapted from an associative learning blocking…

  7. 31 CFR 510.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 510.301 Section 510.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY NORTH KOREA SANCTIONS REGULATIONS General Definitions § 510.301 Blocked...

  8. View southeast of caps for blocks for JFK; blocks are ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View southeast of caps for blocks for JFK; blocks are used to support ship when it is repositioned to paint inaccessible areas masked by original support blocks. - Naval Base Philadelphia-Philadelphia Naval Shipyard, Carpentry Shop, League Island, Philadelphia, Philadelphia County, PA

  9. Ligand uptake in Mycobacterium tuberculosis truncated hemoglobins is controlled by both internal tunnels and active site water molecules

    PubMed Central

    Davidge, Kelly S; Singh, Sandip; Bowman, Lesley AH; Tinajero-Trejo, Mariana; Carballal, Sebastián; Radi, Rafael; Poole, Robert K; Dikshit, Kanak; Estrin, Dario A; Marti, Marcelo A; Boechi, Leonardo

    2015-01-01

    Mycobacterium tuberculosis, the causative agent of human tuberculosis, has two proteins belonging to the truncated hemoglobin (trHb) family. Mt-trHbN presents well-defined internal hydrophobic tunnels that allow O 2 and •NO to migrate easily from the solvent to the active site, whereas Mt-trHbO possesses tunnels that are partially blocked by a few bulky residues, particularly a tryptophan at position G8. Differential ligand migration rates allow Mt-trHbN to detoxify •NO, a crucial step for pathogen survival once under attack by the immune system, much more efficiently than Mt-trHbO. In order to investigate the differences between these proteins, we performed experimental kinetic measurements, •NO decomposition, as well as molecular dynamics simulations of the wild type Mt-trHbN and two mutants, VG8F and VG8W. These mutations introduce modifications in both tunnel topologies and affect the incoming ligand capacity to displace retained water molecules at the active site. We found that a single mutation allows Mt-trHbN to acquire ligand migration rates comparable to those observed for Mt-trHbO, confirming that ligand migration is regulated by the internal tunnel architecture as well as by water molecules stabilized in the active site. PMID:26478812

  10. Ligand uptake in Mycobacterium tuberculosis truncated hemoglobins is controlled by both internal tunnels and active site water molecules.

    PubMed

    Boron, Ignacio; Bustamante, Juan Pablo; Davidge, Kelly S; Singh, Sandip; Bowman, Lesley Ah; Tinajero-Trejo, Mariana; Carballal, Sebastián; Radi, Rafael; Poole, Robert K; Dikshit, Kanak; Estrin, Dario A; Marti, Marcelo A; Boechi, Leonardo

    2015-01-01

    Mycobacterium tuberculosis, the causative agent of human tuberculosis, has two proteins belonging to the truncated hemoglobin (trHb) family. Mt-trHbN presents well-defined internal hydrophobic tunnels that allow O 2 and (•)NO to migrate easily from the solvent to the active site, whereas Mt-trHbO possesses tunnels that are partially blocked by a few bulky residues, particularly a tryptophan at position G8. Differential ligand migration rates allow Mt-trHbN to detoxify (•)NO, a crucial step for pathogen survival once under attack by the immune system, much more efficiently than Mt-trHbO. In order to investigate the differences between these proteins, we performed experimental kinetic measurements, (•)NO decomposition, as well as molecular dynamics simulations of the wild type Mt-trHbN and two mutants, VG8F and VG8W. These mutations introduce modifications in both tunnel topologies and affect the incoming ligand capacity to displace retained water molecules at the active site. We found that a single mutation allows Mt-trHbN to acquire ligand migration rates comparable to those observed for Mt-trHbO, confirming that ligand migration is regulated by the internal tunnel architecture as well as by water molecules stabilized in the active site. PMID:26478812

  11. Ear - blocked at high altitudes

    MedlinePlus

    High altitudes and blocked ears; Flying and blocked ears; Eustachian tube dysfunction - high altitude ... you are going up or coming down from high altitudes. Chewing gum the entire time you are changing ...

  12. The evidence for synthesis of truncated triangular silver nanoplates in the presence of CTAB

    SciTech Connect

    He Xin; Zhao Xiujian Chen Yunxia; Feng Jinyang

    2008-04-15

    Truncated triangular silver nanoplates were prepared by a solution-phase approach, which involved the seed-mediated growth of silver nanoparticles in the presence of cetyltrimethylammonium bromide (CTAB) at 40 deg. C. The result of X-ray diffraction indicates that the as-prepared nanoparticles are made of pure face centered cubic silver. Transmission electron microscopy and atomic force microscopy studies show that the truncated triangular silver nanoplates, with edge lengths of 50 {+-} 5 nm and thicknesses of 27 {+-} 3 nm, are oriented differently on substrates of a copper grid and a fresh mica flake. The corners of these nanoplates are round. The selected area electron diffraction analysis reveals that the silver nanoplates are single crystals with an atomically flat surface. We determine the holistic morphology of truncated triangular silver nanoplates through the above measurements with the aid of computer-aided 3D perspective images.

  13. On the viability of the truncated Israel-Stewart theory in cosmology

    NASA Astrophysics Data System (ADS)

    Shogin, Dmitry; Amund Amundsen, Per; Hervik, Sigbjørn

    2015-10-01

    We apply the causal Israel-Stewart theory of irreversible thermodynamics to model the matter content of the Universe as a dissipative fluid with bulk and shear viscosity. Along with the full transport equations we consider their widely used truncated version. By implementing a dynamical systems approach to Bianchi type IV and V cosmological models with and without cosmological constant, we determine the future asymptotic states of such Universes and show that the truncated Israel-Stewart theory leads to solutions essentially different from the full theory. The solutions of the truncated theory may also manifest unphysical properties. Finally, we find that in the full theory shear viscosity can give a substantial rise to dissipative fluxes, driving the fluid extremely far from equilibrium, where the linear Israel-Stewart theory ceases to be valid.

  14. The Effects of Drop Size Distribution Truncation on Rainfall Integral Parameters and Empirical Relations.

    NASA Astrophysics Data System (ADS)

    Ulbrich, Carlton W.

    1985-06-01

    A description is given of a method of estimating the effects of truncating the raindrop size distribution (DSD) at lower and upper drop diameters Dmin and Dmax which assumes that the DSD can be approximated by a gamma distribution (including the exponential distribution). The method is used to investigate the effects of DSD truncation on rainfall integral parameters (e.g., reflectivity factor, liquid water content etc.) and on empirical relations between pairs of these integral parameters. Tests of the theoretical predictions are performed using a set of drop size data collected with a Joss disdrometer. A brief description is also given of the use of the method to determine DSD truncation effects on precipitation parameters deduced from dual-measurement techniques.

  15. Irrepressible, truncated auxin response factors: natural roles and applications in dissecting auxin gene regulation pathways.

    PubMed

    Ckurshumova, Wenzislava; Krogan, Naden T; Marcos, Danielle; Caragea, Adriana E; Berleth, Thomas

    2012-08-01

    The molecularly well-characterized auxin signal transduction pathway involves two evolutionarily conserved families interacting through their C-terminal domains III and IV: the Auxin Response Factors (ARFs) and their repressors the Aux/IAAs, to control auxin-responsive genes, among them genes involved in auxin transport. ( 1) (,) ( 2) We have developed a new genetic tool to study ARF function. Using MONOPTEROS (MP)/ARF5, we have generated a truncated version of MP (MPΔ), ( 3) which has lost the target domains for repression by Aux/IAA proteins. Besides exploring genetic interactions between MP and Aux/IAAs, we used this construct to trace MP's role in vascular patterning, a previously characterized auxin dependent process. ( 4) (,) ( 5) Here we summarize examples of naturally occurring truncated ARFs and summarize potential applications of truncated ARFs as analytical tools. PMID:22827953

  16. Automated estimation of the truncation of room impulse response by applying a nonlinear decay model.

    PubMed

    Janković, Marko; Ćirić, Dejan G; Pantić, Aleksandar

    2016-03-01

    Noise represents one of the most significant disturbances in measured room impulse responses (RIRs), and it has a potentially large impact on evaluation of the decay parameters. In order to reduce noise effects, various methods have been applied, including truncation of an RIR. In this paper, a procedure for the response truncation based on a model of RIR (nonlinear decay model) is presented. The model is represented by an exponential decay plus stationary noise. Unknown parameters of the model are calculated by an optimization that minimizes the difference between the curve generated by the model and the target one of the response to be truncated. Different curves can be applied in the optimization-absolute value of the RIR, logarithmic decay curve, and Schroeder curve obtained by the backward integration of the RIR. The proposed procedure is tested on various synthesized and measured impulse responses. It is compared with the procedure taken from the literature, often applied in practice. PMID:27036242

  17. Optical asymmetric cryptography based on elliptical polarized light linear truncation and a numerical reconstruction technique.

    PubMed

    Lin, Chao; Shen, Xueju; Wang, Zhisong; Zhao, Cheng

    2014-06-20

    We demonstrate a novel optical asymmetric cryptosystem based on the principle of elliptical polarized light linear truncation and a numerical reconstruction technique. The device of an array of linear polarizers is introduced to achieve linear truncation on the spatially resolved elliptical polarization distribution during image encryption. This encoding process can be characterized as confusion-based optical cryptography that involves no Fourier lens and diffusion operation. Based on the Jones matrix formalism, the intensity transmittance for this truncation is deduced to perform elliptical polarized light reconstruction based on two intensity measurements. Use of a quick response code makes the proposed cryptosystem practical, with versatile key sensitivity and fault tolerance. Both simulation and preliminary experimental results that support theoretical analysis are presented. An analysis of the resistance of the proposed method on a known public key attack is also provided. PMID:24979424

  18. Model Reduction by Balanced Truncation of Linear Systems with a Quadratic Output

    NASA Astrophysics Data System (ADS)

    Van Beeumen, Roel; Meerbergen, Karl

    2010-09-01

    Balanced truncation is a widely used and appreciated projection-based model reduction technique for linear systems. This technique has the following two important properties: approximations by balanced truncation preserve the stability and the H∞-norm (the maximum of the frequency response) of the error system is bounded above by twice the sum of the neglected singular values. This paper tries to extend the framework of linear balanced truncation to systems with a quadratic output. For such systems, the controllability Gramian remains the same. The observability Gramian is computed from a linear system with multiple outputs that is derived from the quadratic output of the original system. We give a numerical example for a large-scale system arising from structural analysis.

  19. Porous block nanofiber composite filters

    DOEpatents

    Ginley, David S.; Curtis, Calvin J.; Miedaner, Alexander; Weiss, Alan J.; Paddock, Arnold

    2016-08-09

    Porous block nano-fiber composite (110), a filtration system (10) and methods of using the same are disclosed. An exemplary porous block nano-fiber composite (110) includes a porous block (100) having one or more pores (200). The porous block nano-fiber composite (110) also includes a plurality of inorganic nano-fibers (211) formed within at least one of the pores (200).

  20. Adaptive finite-element method for diffraction gratings

    NASA Astrophysics Data System (ADS)

    Bao, Gang; Chen, Zhiming; Wu, Haijun

    2005-06-01

    A second-order finite-element adaptive strategy with error control for one-dimensional grating problems is developed. The unbounded computational domain is truncated to a bounded one by a perfectly-matched-layer (PML) technique. The PML parameters, such as the thickness of the layer and the medium properties, are determined through sharp a posteriori error estimates. The adaptive finite-element method is expected to increase significantly the accuracy and efficiency of the discretization as well as reduce the computation cost. Numerical experiments are included to illustrate the competitiveness of the proposed adaptive method.

  1. Actuation fluid adapter for hydraulically-actuated electronically-controlled fuel injector and engine using same

    DOEpatents

    Keyster, Eric S.; Merchant, Jack A.

    2002-01-01

    A fuel injector adapter consists of a block defining a pressure communication passage therethrough and an actuation fluid passage. The actuation fluid passage includes three separate branches that open through an outer surface of the block at three separate locations.

  2. Carboxyl terminus-truncated α1D-adrenoceptors inhibit the ERK pathway.

    PubMed

    Alfonzo-Méndez, Marco A; Castillo-Badillo, Jean A; Romero-Ávila, M Teresa; Rivera, Richard; Chun, Jerold; García-Sáinz, J Adolfo

    2016-08-01

    Human α1D-adrenoceptors are G protein-coupled receptors that mediate adrenaline/noradrenaline actions. There is a growing interest in identifying regulatory domains in these receptors and determining how they function. In this work, we show that the absence of the human α1D-adrenoceptor carboxyl tail results in altered ERK (extracellular signal-regulated kinase) and p38 phosphorylation states. Amino terminus-truncated and both amino and carboxyl termini-truncated α1D-adrenoceptors were transfected into Rat-1, HEK293, and B103 cells, and changes in the phosphorylation state of extracellular signal-regulated kinase was assessed using biochemical and biophysical approaches. The phosphorylation state of other protein kinases (p38, MEK1, and Raf-1) was also studied. Noradrenaline-induced ERK phosphorylation in Rat-1 fibroblasts expressing amino termini-truncated α1D-adrenoceptors. However, in cells expressing receptors with both amino and carboxyl termini truncations, noradrenaline-induced activation was abrogated. Interestingly, ERK phosphorylation that normally occurs through activation of endogenous G protein-coupled receptors, EGF receptors, and protein kinase C, was also decreased, suggesting that downstream steps in the mitogen-activated protein kinase pathway were affected. A similar effect was observed in B103 cells but not in HEK 293 cells. Phosphorylation of Raf-1 and MEK1 was also diminished in Rat-1 fibroblasts expressing amino- and carboxyl-truncated α1D-adrenoceptors. Our data indicate that expression of carboxyl terminus-truncated α1D-adrenoceptors alters ERK and p38 phosphorylation state. PMID:27146292

  3. Evidence for new C-terminally truncated variants of α- and β-tubulins

    PubMed Central

    Aillaud, Chrystelle; Bosc, Christophe; Saoudi, Yasmina; Denarier, Eric; Peris, Leticia; Sago, Laila; Taulet, Nicolas; Cieren, Adeline; Tort, Olivia; Magiera, Maria M.; Janke, Carsten; Redeker, Virginie; Andrieux, Annie; Moutin, Marie-Jo

    2016-01-01

    Cellular α-tubulin can bear various carboxy-terminal sequences: full-length tubulin arising from gene neosynthesis is tyrosinated, and two truncated variants, corresponding to detyrosinated and Δ2 α‑tubulin, result from the sequential cleavage of one or two C-terminal residues, respectively. Here, by using a novel antibody named 3EG that is highly specific to the –EEEG C-terminal sequence, we demonstrate the occurrence in neuronal tissues of a new αΔ3‑tubulin variant corresponding to α1A/B‑tubulin deleted of its last three residues (EEY). αΔ3‑tubulin has a specific distribution pattern: its quantity in the brain is similar to that of αΔ2-tubulin around birth but is much lower in adult tissue. This truncated α1A/B-tubulin variant can be generated from αΔ2-tubulin by the deglutamylases CCP1, CCP4, CCP5, and CCP6 but not by CCP2 and CCP3. Moreover, using 3EG antibody, we identify a C‑terminally truncated β-tubulin form with the same –EEEG C-terminal sequence. Using mass spectrometry, we demonstrate that β2A/B-tubulin is modified by truncation of the four C-terminal residues (EDEA). We show that this newly identified βΔ4-tubulin is ubiquitously present in cells and tissues and that its level is constant throughout the cell cycle. These new C-terminally truncated α- and β-tubulin variants, both ending with –EEEG sequence, are expected to regulate microtubule physiology. Of interest, the αΔ3-tubulin seems to be related to dynamic microtubules, resembling tyrosinated-tubulin rather than the other truncated variants, and may have critical function(s) in neuronal development. PMID:26739754

  4. Evidence for new C-terminally truncated variants of α- and β-tubulins.

    PubMed

    Aillaud, Chrystelle; Bosc, Christophe; Saoudi, Yasmina; Denarier, Eric; Peris, Leticia; Sago, Laila; Taulet, Nicolas; Cieren, Adeline; Tort, Olivia; Magiera, Maria M; Janke, Carsten; Redeker, Virginie; Andrieux, Annie; Moutin, Marie-Jo

    2016-02-15

    Cellular α-tubulin can bear various carboxy-terminal sequences: full-length tubulin arising from gene neosynthesis is tyrosinated, and two truncated variants, corresponding to detyrosinated and Δ2 α‑tubulin, result from the sequential cleavage of one or two C-terminal residues, respectively. Here, by using a novel antibody named 3EG that is highly specific to the -EEEG C-terminal sequence, we demonstrate the occurrence in neuronal tissues of a new αΔ3‑tubulin variant corresponding to α1A/B‑tubulin deleted of its last three residues (EEY). αΔ3‑tubulin has a specific distribution pattern: its quantity in the brain is similar to that of αΔ2-tubulin around birth but is much lower in adult tissue. This truncated α1A/B-tubulin variant can be generated from αΔ2-tubulin by the deglutamylases CCP1, CCP4, CCP5, and CCP6 but not by CCP2 and CCP3. Moreover, using 3EG antibody, we identify a C‑terminally truncated β-tubulin form with the same -EEEG C-terminal sequence. Using mass spectrometry, we demonstrate that β2A/B-tubulin is modified by truncation of the four C-terminal residues (EDEA). We show that this newly identified βΔ4-tubulin is ubiquitously present in cells and tissues and that its level is constant throughout the cell cycle. These new C-terminally truncated α- and β-tubulin variants, both ending with -EEEG sequence, are expected to regulate microtubule physiology. Of interest, the αΔ3-tubulin seems to be related to dynamic microtubules, resembling tyrosinated-tubulin rather than the other truncated variants, and may have critical function(s) in neuronal development. PMID:26739754

  5. Osteology of Priocharax and remarkable developmental truncation in a miniature Amazonian fish (Teleostei: Characiformes: Characidae).

    PubMed

    Mattox, George M T; Britz, Ralf; Toledo-Piza, Mônica

    2016-01-01

    Establishing phylogenetic relationships of miniature fishes is challenging in taxa with developmental truncation. Within the Characiformes, developmental truncation appears to be relatively rare, with the Neotropical genus Priocharax being an example. Priocharax includes three miniature species among the smallest of the order and has been hypothesized to belong to the Heterocharacinae. The pronounced reduction in its skeleton, however, prevented a clearer evaluation of its relationships. The present detailed osteological study was designed to address this question and revealed that 21 bones are absent and nine other skeletal structures are simplified in Priocharax when compared to other characids. Comparison of the skeleton of adult Priocharax with early developmental stages of other characids demonstrated that most of the absences and simplifications can be interpreted as developmental truncations. The most striking developmental truncations are in the pectoral girdle, in which the endoskeleton remains entirely cartilaginous. Other interesting truncations are in the ethmoid region of the skull, infraorbital series, and Weberian apparatus, in which the claustrum is absent. Our study also revealed some unusual sexual dimorphisms in the pelvic girdle. Two cladistic analyses were performed to assess the relationships of Priocharax within the Heterocharacinae. The first consisted of a traditional analysis in which all absences and reductions of Priocharax were coded in the same way as in the remaining taxa. This resulted in three equally most parsimonious topologies, all of which have Priocharax as the most basal taxon of the Heterocharacinae. The second analysis incorporated ontogenetic information, and most absences and reductions of Priocharax were reinterpreted as apomorphic conditions and thus, coded differently from similar conditions in outgroups. This resulted in a single phylogenetic hypothesis with Priocharax and Gnathocharax as sister groups based on seven

  6. Using Attribute Blocks with Children

    ERIC Educational Resources Information Center

    Huntsberger, John P.

    1978-01-01

    The classroom use of attribute blocks to develop thinking skills is defended in this article. Divergent-productive thinking is identified as an important skill that can be developed by using these blocks. However, teacher commitment and involvement in the program is considered necessary. Suggestions for using these blocks are included. (MA)

  7. Building Curriculum during Block Play

    ERIC Educational Resources Information Center

    Andrews, Nicole

    2015-01-01

    Blocks are not just for play! In this article, Nicole Andrews describes observing the interactions of three young boys enthusiastically engaged in the kindergarten block center of their classroom, using blocks in a building project that displayed their ability to use critical thinking skills, physics exploration, and the development of language…

  8. Property Blocks: Games and Activities.

    ERIC Educational Resources Information Center

    Humphreys, Alan, Ed.; Dailey, Jean, Ed.

    This pamphlet describes the property blocks produced by MINNEMAST, and discusses their use in the development of thinking processes. Classification systems, including block diagrams and tree diagrams, are discussed. Sixteen classroom activities and eleven games which use the blocks are described. Suggestions to the teacher for further reading are…

  9. CORE SATURATION BLOCKING OSCILLATOR

    DOEpatents

    Spinrad, R.J.

    1961-10-17

    A blocking oscillator which relies on core saturation regulation to control the output pulse width is described. In this arrangement an external magnetic loop is provided in which a saturable portion forms the core of a feedback transformer used with the thermionic or semi-conductor active element. A first stationary magnetic loop establishes a level of flux through the saturation portion of the loop. A second adjustable magnet moves the flux level to select a saturation point giving the desired output pulse width. (AEC)

  10. A study of the modal truncation error in the component mode analysis of a dual-rotor system

    NASA Technical Reports Server (NTRS)

    Li, D. F.; Gunter, E. J.

    1981-01-01

    In the component mode synthesis method, the equation of motion in the generalized coordinates is built upon the undamped eigenvalue data of the component structures. Error is inevitable when truncated modes are used. In this paper, two modal truncation schemes were evaluated with regard to the critical speed, stability, and unbalance response of a two-spool gas turbine engine. The numbers of modes required to yield acceptable accuracy in these cases were determined. Guidelines for modal truncation were derived from these results.

  11. Automatic Blocking Of QR and LU Factorizations for Locality

    SciTech Connect

    Yi, Q; Kennedy, K; You, H; Seymour, K; Dongarra, J

    2004-03-26

    QR and LU factorizations for dense matrices are important linear algebra computations that are widely used in scientific applications. To efficiently perform these computations on modern computers, the factorization algorithms need to be blocked when operating on large matrices to effectively exploit the deep cache hierarchy prevalent in today's computer memory systems. Because both QR (based on Householder transformations) and LU factorization algorithms contain complex loop structures, few compilers can fully automate the blocking of these algorithms. Though linear algebra libraries such as LAPACK provides manually blocked implementations of these algorithms, by automatically generating blocked versions of the computations, more benefit can be gained such as automatic adaptation of different blocking strategies. This paper demonstrates how to apply an aggressive loop transformation technique, dependence hoisting, to produce efficient blockings for both QR and LU with partial pivoting. We present different blocking strategies that can be generated by our optimizer and compare the performance of auto-blocked versions with manually tuned versions in LAPACK, both using reference BLAS, ATLAS BLAS and native BLAS specially tuned for the underlying machine architectures.

  12. A Posteriori Restoration of Block Transform-Compressed Data

    NASA Technical Reports Server (NTRS)

    Brown, R.; Boden, A. F.

    1995-01-01

    The Galileo spacecraft will use lossy data compression for the transmission of its science imagery over the low-bandwidth communication system. The technique chosen for image compression is a block transform technique based on the Integer Cosine Transform, a derivative of the JPEG image compression standard. Considered here are two known a posteriori enhancement techniques, which are adapted.

  13. Eikonalization of conformal blocks

    SciTech Connect

    Fitzpatrick, A. Liam; Kaplan, Jared; Walters, Matthew T.; Wang, Junpu

    2015-09-03

    Classical field configurations such as the Coulomb potential and Schwarzschild solution are built from the t-channel exchange of many light degrees of freedom. We study the CFT analog of this phenomenon, which we term the 'eikonalization' of conformal blocks. We show that when an operator T appears in the OPE Ο(x)Ο(0), then the large spin Fock space states [TT···T] also appear in this OPE with a computable coefficient. The sum over the exchange of these Fock space states in an correlator build the classical 'T field' in the dual AdS description. In some limits the sum of all Fock space exchanges can be represented as the exponential of a single T exchange in the 4-pt correlator of O. Our results should be useful for systematizing 1/ℓ perturbation theory in general CFTs and simplifying the computation of large spin OPE coefficients. As examples we obtain the leading log ℓ dependence of Fock space conformal block coefficients, and we directly compute the OPE coefficients of the simplest ‘triple-trace’ operators.

  14. Eikonalization of conformal blocks

    DOE PAGESBeta

    Fitzpatrick, A. Liam; Kaplan, Jared; Walters, Matthew T.; Wang, Junpu

    2015-09-03

    Classical field configurations such as the Coulomb potential and Schwarzschild solution are built from the t-channel exchange of many light degrees of freedom. We study the CFT analog of this phenomenon, which we term the 'eikonalization' of conformal blocks. We show that when an operator T appears in the OPE Ο(x)Ο(0), then the large spin Fock space states [TT···T]ℓ also appear in this OPE with a computable coefficient. The sum over the exchange of these Fock space states in an correlator build the classical 'T field' in the dual AdS description. In some limits the sum of all Fock spacemore » exchanges can be represented as the exponential of a single T exchange in the 4-pt correlator of O. Our results should be useful for systematizing 1/ℓ perturbation theory in general CFTs and simplifying the computation of large spin OPE coefficients. As examples we obtain the leading log ℓ dependence of Fock space conformal block coefficients, and we directly compute the OPE coefficients of the simplest ‘triple-trace’ operators.« less

  15. Nerve blocks for chronic pain.

    PubMed

    Hayek, Salim M; Shah, Atit

    2014-10-01

    Nerve blocks are often performed as therapeutic or palliative interventions for pain relief. However, they are often performed for diagnostic or prognostic purposes. When considering nerve blocks for chronic pain, clinicians must always consider the indications, risks, benefits, and proper technique. Nerve blocks encompass a wide variety of interventional procedures. The most common nerve blocks for chronic pain and that may be applicable to the neurosurgical patient population are reviewed in this article. This article is an introduction and brief synopsis of the different available blocks that can be offered to a patient. PMID:25240668

  16. Selective Absorption Mechanism for the Maintenance of Blocking

    NASA Astrophysics Data System (ADS)

    Yamazaki, Akira; Itoh, Hisanori

    2010-05-01

    analyses and simple numerical experiments. Ten episodes of blocking that occurred in the mid-North Pacific and the eastern North Atlantic between 1990 and 2005 are investigated. Trajectories of synoptic anticyclones and cyclones during blocking persistent periods are analyzed and show the selective absorption of anticyclonic eddies by the blocking highs. We also perform numerical experiments using the nonlinear barotropic vorticity equation on a beta-plane channel. The maintenance rate of blocking is quantitatively evaluated by using an areal averaged method. The result supports the block maintenance by the SAM. From the above two results, we can conclude that the SAM is more adaptive as the block maintenance mechanism than the ESM, because the essence of the SAM is absorption of eddies, not but eddy straining.

  17. Blocks database and its applications.

    PubMed

    Henikoff, J G; Henikoff, S

    1996-01-01

    Protein blocks consist of multiply aligned sequence segments without gaps that represent the most highly conserved regions of protein families. A database of blocks has been constructed by successive application of the fully automated PROTOMAT system to lists of protein family members obtained from Prosite documentation. Currently, Blocks 8.0 based on protein families documented in Prosite 12 consists of 2884 blocks representing 770 families. Searches of the Blocks Database are carried out using protein or DNA sequence queries, and results are returned with measures of significance for both single and multiple block hits. The databse has also proved useful for derivation of amino acid substitution matrices (the Blosum series) and other sets of parameters. WWW and E-mail servers provide access to the database and associated functions, including a block maker for sequences provided by the user. PMID:8743679

  18. Block copolymer investigations

    NASA Astrophysics Data System (ADS)

    Yufa, Nataliya A.

    The research presented in this thesis deals with various aspects of block copolymers on the nanoscale: their behavior at a range of temperatures, their use as scaffolds, or for creation of chemically striped surfaces, as well as the behavior of metals on block copolymers under the influence of UV light, and the healing behavior of copolymers. Invented around the time of World War II, copolymers have been used for decades due to their macroscopic properties, such as their ability to be molded without vulcanization, and the fact that, unlike rubber, they can be recycled. In recent years, block copolymers (BCPs) have been used for lithography, as scaffolds for nano-objects, to create a magnetic hard drive, as well as in photonic and other applications. In this work we used primarily atomic force microscopy (AFM) and transmission electron microscopy (TEM), described in Chapter II, to conduct our studies. In Chapter III we demonstrate a new and general method for positioning nanoparticles within nanoscale grooves. This technique is suitable for nanodots, nanocrystals, as well as DNA. We use AFM and TEM to demonstrate selective decoration. In Chapters IV and V we use AFM and TEM to study the structure of polymer surfaces coated with metals and self-assembled monolayers. We describe how the surfaces were created, exhibit their structure on the nanoscale, and prove that their macroscopic wetting properties have been altered compared to the original polymer structures. Finally, Chapters VI and VII report out in-situ AFM studies of BCP at high temperatures, made possible only recently with the invention of air-tight high-temperature AFM imaging cells. We locate the transition between disordered films and cylinders during initial ordering. Fluctuations of existing domains leading to domain coarsening are also described, and are shown to be consistent with reptation and curvature minimization. Chapter VII deals with the healing of PS-b-PMMA following AFM-tip lithography or

  19. The C-terminus of CaMKII is truncated when expressed in E. coli.

    PubMed

    Praseeda, M; Beena, Mary K; Asha, Sarah John; Omkumar, R V

    2004-04-01

    The neuronal enzyme Calcium/calmodulin dependent protein kinase type II (CaMKII) is a key molecule in biochemical events necessary for learning and memory. The alpha-subunit of CaMKII expressed in E. coli as well as in insect cells shows similar catalytic behavior [Praseeda, M., Pradeep, K. K., Krupa, A., Sri Krishna, S., Leena, S., Rajeev Kumar, R., John Cheriyan, Mayadevi, M., Srinivasan, N., and Omkumar, R. V. (2003) Biochem. J. In Press]. The association domain of the enzyme has been crystallized in its native multimeric form after expression in E. coli [Hoelz, A., Nairn, A. C. and Kuriyan, J. (2003) Molecular Cell 11, 1241]. However a major truncation product accompanies the full-length protein when expressed in E. coli. We show by epitope labeling and immunoblotting that the truncation occurs at the C-terminal half of the protein so that the N-terminal catalytic domain is complete in the truncated product. This supports the use of the preparation of alpha-CaMKII expressed in E. coli for studies on functions of the catalytic site. Our data will also be helpful in designing modified prokaryotic expression systems for CaMKII devoid of the trun-cation product, which are easier to use compared to the insect cell system. PMID:15078206

  20. Implementation of a truncated cusp filter for real-time digital pulse processing in nuclear spectrometry

    NASA Astrophysics Data System (ADS)

    Bogovac, M.; Csato, C.

    2012-12-01

    In this work the transfer function for a truncated cusp infinite impulse response (IIR) filter has been derived. The truncated cusp filter, when given an exponential pulse in the presence of white noise, outputs a truncated cusp pulse which is optimum pulse shape under the constraint of finite pulse duration. However it features a pole outside of the unit-circle and is therefore inherently unstable. To overcome this instability a switching algorithm with two alternating poles has been applied. The filter has been simulated with MATLAB and Simulink and implemented on-board a FPGA. The pulses from a waveform generator and silicon drift detector (SDD) have been also processed by the filter and results compared with theory. We find that the simulation and measurements were in agreement and show that energy resolution due to electronic noise can be improved by up to 7.5% using a truncated cusp instead of triangular filter. An improvement of up to 2.8% in overall energy resolution was measured with a typical X-ray spectrometer based on a SDD detector with a nominal energy resolution of 150 eV at energies of MnKα line.

  1. Truncated multiGaussian fields and effective conductance of binary media.

    SciTech Connect

    Marzouk, Youssef M.; van Bloemen Waanders, Bart Gustaaf; Ray, Jaideep; McKenna, Sean Andrew

    2011-01-01

    Truncated Gaussian fields provide a flexible model for defining binary media with dispersed (as opposed to layered) inclusions. General properties of excursion sets on these truncated fields are coupled with a distance-based upscaling algorithm and approximations of point process theory to develop an estimation approach for effective conductivity in two-dimensions. Estimation of effective conductivity is derived directly from knowledge of the kernel size used to create the multiGaussian field, defined as the full-width at half maximum (FWHM), the truncation threshold and conductance values of the two modes. Therefore, instantiation of the multiGaussian field is not necessary for estimation of the effective conductance. The critical component of the effective medium approximation developed here is the mean distance between high conductivity inclusions. This mean distance is characterized as a function of the FWHM, the truncation threshold and the ratio of the two modal conductivities. Sensitivity of the resulting effective conductivity to this mean distance is examined for two levels of contrast in the two modal conductances and different FWHM sizes. Results demonstrate that the FWHM is a robust measure of mean travel distance in the background medium. The resulting effective conductivities are accurate when compared to numerical results and results obtained from effective media theory, distance-based upscaling and numerical simulation.

  2. An iterative algorithm for soft tissue reconstruction from truncated flat panel projections

    NASA Astrophysics Data System (ADS)

    Langan, D.; Claus, B.; Edic, P.; Vaillant, R.; De Man, B.; Basu, S.; Iatrou, M.

    2006-03-01

    The capabilities of flat panel interventional x-ray systems continue to expand, enabling a broader array of medical applications to be performed in a minimally invasive manner. Although CT is providing pre-operative 3D information, there is a need for 3D imaging of low contrast soft tissue during interventions in a number of areas including neurology, cardiac electro-physiology, and oncology. Unlike CT systems, interventional angiographic x-ray systems provide real-time large field of view 2D imaging, patient access, and flexible gantry positioning enabling interventional procedures. However, relative to CT, these C-arm flat panel systems have additional technical challenges in 3D soft tissue imaging including slower rotation speed, gantry vibration, reduced lateral patient field of view (FOV), and increased scatter. The reduced patient FOV often results in significant data truncation. Reconstruction of truncated (incomplete) data is known an "interior problem", and it is mathematically impossible to obtain an exact reconstruction. Nevertheless, it is an important problem in 3D imaging on a C-arm to address the need to generate a 3D reconstruction representative of the object being imaged with minimal artifacts. In this work we investigate the application of an iterative Maximum Likelihood Transmission (MLTR) algorithm to truncated data. We also consider truncated data with limited views for cardiac imaging where the views are gated by the electrocardiogram(ECG) to combat motion artifacts.

  3. Recombinant truncated tilapia growth hormone enhances growth and innate immunity in tilapia fry (Oreochromis sp.).

    PubMed

    Acosta, Jannel; Carpio, Yamila; Besada, Vladimir; Morales, Reynold; Sánchez, Aniel; Curbelo, Yosvel; Ayala, Julio; Estrada, Mario P

    2008-05-15

    Pichia pastoris cells transformed with a plasmid engineered for the expression of tilapia growth hormone as a secreted product produced a proteolytically cleaved form of the recombinant protein. The sequence of this truncated variant was obtained by mass spectrometry analysis. The cleavage site was determined to be between residues Tyr 158 and Tyr 159. The resulting truncated tilapia growth hormone was a single chain protein lacking 46 amino acids of the C-terminal portion. In this study, we showed that the truncated growth hormone produced in the P. pastoris culture supernatant has growth promoting effects and stimulates innate immune parameters (lysozyme and lectins) in tilapia larvae. These results suggest that the C-terminal portion of growth hormone is not required for its growth promoting activity and the innate immune functions studied herein in fish. In addition, we found that the culture supernatant containing truncated tilapia growth hormone has a stronger effect over growth and immune system than cells lysate containing intact tilapia growth hormone expressed in P. pastoris. PMID:18471813

  4. SUSY partners of the truncated oscillator, Painlevé transcendents and Bäcklund transformations

    NASA Astrophysics Data System (ADS)

    Fernández C, D. J.; Morales-Salgado, V. S.

    2016-05-01

    In this work the supersymmetric technique is applied to the truncated oscillator to generate Hamiltonians ruled by second and third-order polynomial Heisenberg algebras, which are connected to the Painlevé IV and Painlevé V equations respectively. The aforementioned connection is exploited to produce particular solutions to both nonlinear differential equations and the Bäcklund transformations relating them.

  5. Mitochondrial genome evolution and tRNA truncation in Acariformes mites: new evidence from eriophyoid mites

    PubMed Central

    Xue, Xiao-Feng; Guo, Jing-Feng; Dong, Yan; Hong, Xiao-Yue; Shao, Renfu

    2016-01-01

    The subclass Acari (mites and ticks) comprises two super-orders: Acariformes and Parasitiformes. Most species of the Parasitiformes known retained the ancestral pattern of mitochondrial (mt) gene arrangement of arthropods, and their mt tRNAs have the typical cloverleaf structure. All of the species of the Acariformes known, however, have rearranged mt genomes and truncated mt tRNAs. We sequenced the mt genomes of two species of Eriophyoidea: Phyllocoptes taishanensis and Epitrimerus sabinae. The mt genomes of P. taishanensis and E. sabinae are 13,475 bp and 13,531 bp, respectively, are circular and contain the 37 genes typical of animals; most mt tRNAs are highly truncated in both mites. On the other hand, these two eriophyoid mites have the least rearranged mt genomes seen in the Acariformes. Comparison between eriophyoid mites and other Aacariformes mites showed that: 1) the most recent common ancestor of Acariformes mites retained the ancestral pattern of mt gene arrangement of arthropods with slight modifications; 2) truncation of tRNAs for cysteine, phenylalanine and histidine occurred once in the most recent common ancestor of Acariformes mites whereas truncation of other tRNAs occurred multiple times; and 3) the placement of eriophyoid mites in the order Trombidiformes needs to be reviewed. PMID:26732998

  6. Effects of mutation, truncation, and temperature on the folding kinetics of a WW domain.

    PubMed

    Maisuradze, Gia G; Zhou, Rui; Liwo, Adam; Xiao, Yi; Scheraga, Harold A

    2012-07-20

    The purpose of this work is to show how mutation, truncation, and change of temperature can influence the folding kinetics of a protein. This is accomplished by principal component analysis of molecular-dynamics-generated folding trajectories of the triple β-strand WW domain from formin binding protein 28 (FBP28) (Protein Data Bank ID: 1E0L) and its full-size, and singly- and doubly-truncated mutants at temperatures below and very close to the melting point. The reasons for biphasic folding kinetics [i.e., coexistence of slow (three-state) and fast (two-state) phases], including the involvement of a solvent-exposed hydrophobic cluster and another delocalized hydrophobic core in the folding kinetics, are discussed. New folding pathways are identified in free-energy landscapes determined in terms of principal components for full-size mutants. Three-state folding is found to be a main mechanism for folding the FBP28 WW domain and most of the full-size and truncated mutants. The results from the theoretical analysis are compared to those from experiment. Agreements and discrepancies between the theoretical and experimental results are discussed. Because of its importance in understanding protein kinetics and function, the diffusive mechanism by which the FBP28 WW domain and its full-size and truncated mutants explore their conformational space is examined in terms of the mean-square displacement and principal component analysis eigenvalue spectrum analyses. Subdiffusive behavior is observed for all studied systems. PMID:22560992

  7. Computationally efficient analysis of extraordinary optical transmission through infinite and truncated subwavelength hole arrays

    NASA Astrophysics Data System (ADS)

    Camacho, Miguel; Boix, Rafael R.; Medina, Francisco

    2016-06-01

    The authors present a computationally efficient technique for the analysis of extraordinary transmission through both infinite and truncated periodic arrays of slots in perfect conductor screens of negligible thickness. An integral equation is obtained for the tangential electric field in the slots both in the infinite case and in the truncated case. The unknown functions are expressed as linear combinations of known basis functions, and the unknown weight coefficients are determined by means of Galerkin's method. The coefficients of Galerkin's matrix are obtained in the spatial domain in terms of double finite integrals containing the Green's functions (which, in the infinite case, is efficiently computed by means of Ewald's method) times cross-correlations between both the basis functions and their divergences. The computation in the spatial domain is an efficient alternative to the direct computation in the spectral domain since this latter approach involves the determination of either slowly convergent double infinite summations (infinite case) or slowly convergent double infinite integrals (truncated case). The results obtained are validated by means of commercial software, and it is found that the integral equation technique presented in this paper is at least two orders of magnitude faster than commercial software for a similar accuracy. It is also shown that the phenomena related to periodicity such as extraordinary transmission and Wood's anomaly start to appear in the truncated case for arrays with more than 100 (10 ×10 ) slots.

  8. 12 CFR Appendix D to Part 229 - Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 12 Banks and Banking 3 2010-01-01 2010-01-01 false Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards D Appendix D to Part 229 Banks and Banking FEDERAL... COLLECTION OF CHECKS (REGULATION CC) Pt. 229, App. D Appendix D to Part 229—Indorsement, Reconverting...

  9. 12 CFR Appendix D to Part 229 - Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 12 Banks and Banking 3 2012-01-01 2012-01-01 false Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards D Appendix D to Part 229 Banks and Banking FEDERAL... COLLECTION OF CHECKS (REGULATION CC) Pt. 229, App. D Appendix D to Part 229—Indorsement, Reconverting...

  10. Cancer cells express aberrant DNMT3B transcripts encoding truncated proteins

    PubMed Central

    Ostler, KR; Davis, EM; Payne, SL; Gosalia, BB; Expósito-Céspedes, J; Le Beau, MM; Godley, LA

    2008-01-01

    Cancer cells display an altered distribution of DNA methylation relative to normal cells. Certain tumor suppressor gene promoters are hypermethylated and transcriptionally inactivated, whereas repetitive DNA is hypomethylated and transcriptionally active. Little is understood about how the abnormal DNA methylation patterns of cancer cells are established and maintained. Here, we identify over 20 DNMT3B transcripts from many cancer cell lines and primary acute leukemia cells that contain aberrant splicing at the 5′ end of the gene, encoding truncated proteins lacking the C-terminal catalytic domain. Many of these aberrant transcripts retain intron sequences. Although the aberrant transcripts represent a minority of the DNMT3B transcripts present, Western blot analysis demonstrates truncated DNMT3B isoforms in the nuclear protein extracts of cancer cells. To test if expression of a truncated DNMT3B protein could alter the DNA methylation patterns within cells, we expressed DNMT3B7, the most frequently expressed aberrant transcript, in 293 cells. DNMT3B7-expressing 293 cells have altered gene expression as identified by microarray analysis. Some of these changes in gene expression correlate with altered DNA methylation of corresponding CpG islands. These results suggest that truncated DNMT3B proteins could play a role in the abnormal distribution of DNA methylation found in cancer cells. PMID:17353906

  11. Truncated RAF kinases drive resistance to MET inhibition in MET-addicted cancer cells

    PubMed Central

    Petti, Consalvo; Picco, Gabriele; Martelli, Maria Luisa; Trisolini, Elena; Bucci, Enrico; Perera, Timothy; Isella, Claudio; Medico, Enzo

    2015-01-01

    Constitutively active receptor tyrosine kinases (RTKs) are known oncogenic drivers and provide valuable therapeutic targets in many cancer types. However, clinical efficacy of RTK inhibitors is limited by intrinsic and acquired resistance. To identify genes conferring resistance to inhibition of the MET RTK, we conducted a forward genetics screen in the GTL-16 gastric cancer cell line, carrying MET amplification and exquisitely sensitive to MET inhibition. Cells were transduced with three different retroviral cDNA expression libraries and selected for growth in the presence of the MET inhibitor PHA-665752. Selected cells displayed robust and reproducible enrichment of library-derived cDNAs encoding truncated forms of RAF1 and BRAF proteins, whose silencing reversed the resistant phenotype. Transduction of naïve GTL-16 cells with truncated, but not full length, RAF1 and BRAF conferred in vitro and in vivo resistance to MET inhibitors, which could be reversed by MEK inhibition. Induction of resistance by truncated RAFs was confirmed in other MET-addicted cell lines, and further extended to EGFR-addicted cells. These data show that truncated RAF1 and BRAF proteins, recently described as products of genomic rearrangements in gastric cancer and other malignancies, have the ability to render neoplastic cells resistant to RTK-targeted therapy. PMID:25473895

  12. Compensation for acoustic heterogeneities in photoacoustic computed tomography using a variable temporal data truncation reconstruction method

    NASA Astrophysics Data System (ADS)

    Poudel, Joemini; Matthews, Thomas P.; Anastasio, Mark A.; Wang, Lihong V.

    2016-03-01

    Photoacoustic computed tomography (PACT) is an emerging computed imaging modality that exploits optical contrast and ultrasonic detection principles to form images of the absorbed optical energy density within tissue. If the object possesses spatially variant acoustic properties that are unaccounted for by the reconstruction algorithm, the estimated image can contain distortions. While reconstruction algorithms have recently been developed for compensating for this effect, they generally require the objects acoustic properties to be known a priori. To circumvent the need for detailed information regarding an objects acoustic properties, we have previously proposed a half-time reconstruction method for PACT. A half-time reconstruction method estimates the PACT image from a data set that has been temporally truncated to exclude the data components that have been strongly aberrated. In this approach, the degree of temporal truncation is the same for all measurements. However, this strategy can be improved upon it when the approximate sizes and locations of strongly heterogeneous structures such as gas voids or bones are known. In this work, we investigate PACT reconstruction algorithms that are based on a variable temporal data truncation (VTDT) approach that represents a generalization of the half-time reconstruction approach. In the VTDT approach, the degree of temporal truncation for each measurement is determined by the distance between the corresponding transducer location and the nearest known bone or gas void location. Reconstructed images from a numerical phantom is employed to demonstrate the feasibility and effectiveness of the approach.

  13. Secondary Structure Prediction of Protein Constructs Using Random Incremental Truncation and Vacuum-Ultraviolet CD Spectroscopy

    PubMed Central

    Pukáncsik, Mária; Orbán, Ágnes; Nagy, Kinga; Matsuo, Koichi; Gekko, Kunihiko; Maurin, Damien; Hart, Darren; Kézsmárki, István; Vertessy, Beata G.

    2016-01-01

    A novel uracil-DNA degrading protein factor (termed UDE) was identified in Drosophila melanogaster with no significant structural and functional homology to other uracil-DNA binding or processing factors. Determination of the 3D structure of UDE is excepted to provide key information on the description of the molecular mechanism of action of UDE catalysis, as well as in general uracil-recognition and nuclease action. Towards this long-term aim, the random library ESPRIT technology was applied to the novel protein UDE to overcome problems in identifying soluble expressing constructs given the absence of precise information on domain content and arrangement. Nine constructs of UDE were chosen to decipher structural and functional relationships. Vacuum ultraviolet circular dichroism (VUVCD) spectroscopy was performed to define the secondary structure content and location within UDE and its truncated variants. The quantitative analysis demonstrated exclusive α-helical content for the full-length protein, which is preserved in the truncated constructs. Arrangement of α-helical bundles within the truncated protein segments suggested new domain boundaries which differ from the conserved motifs determined by sequence-based alignment of UDE homologues. Here we demonstrate that the combination of ESPRIT and VUVCD spectroscopy provides a new structural description of UDE and confirms that the truncated constructs are useful for further detailed functional studies. PMID:27273007

  14. Direct imaging of haloes and truncations in face-on nearby galaxies

    NASA Astrophysics Data System (ADS)

    Knapen, Johan; Peters, Stephan; van der Kruit, Piet; Trujillo, Ignacio; Fliri, Juergen; Cisternas, Mauricio

    2015-08-01

    We use ultra-deep imaging from the IAC Stripe82 Legacy Project to study the surface photometry of 22 nearby, face-on to moderately inclined spiral galaxies. The reprocessed and co-added SDSS/Stripe82 imaging allows us to probe the galaxy down to 29-30 r‧-magnitudes/arcsec2 and thus reach into the very faint outskirts of the galaxies. We find extended stellar haloes in over half of our sample galaxies, and truncations in three of them. The presence of stellar haloes and truncations is mutually exclusive, and we argue that the presence of a stellar halo can hide a truncation. We find that the onset of the halo and the truncation scales tightly with galaxy size. Interestingly, the fraction of light does not correlate with dynamic mass. We highlight the importance of a proper analysis of the extended wings of the point spread function (PSF), finding that around half the light at the faintest levels is from the inner regions, though not the nucleus, of a galaxy, re-distributed to the outskirts by the PSF. We discuss implications of this effect for future deep imaging surveys, such as with the LSST.

  15. Where There's Smoke, There's Fire: the Effect of Truncated Testimony on Juror Decision-making.

    PubMed

    Anderson, Lakin; Gross, Julien; Sonne, Trine; Zajac, Rachel; Hayne, Harlene

    2016-01-01

    In countries that allow child complainants of abuse to present their direct evidence via pre-recorded videotape, the recording is sometimes truncated for relevance or admissibility purposes before it is presented to the jury. In two experiments, we investigated how this practice affects mock jurors' judgments of child credibility and defendant culpability when truncation omitted the child's less plausible allegations. Mock jurors read a transcript of a 6-year-old girl making an abuse allegation against the janitor at her school. Some jurors read this allegation only (truncated version), while others also read either one or two additional - but less plausible - allegations by the same child. Contrary to what we predicted, the presence of these additional allegations did not decrease jurors' belief in the core allegation, nor did it influence their judgments about the child complainant's honesty or cognitive competence. In fact, under at least one condition, reading additional, less plausible allegations made jurors more likely to pronounce the defendant guilty of the core allegation - even when jurors did not believe the additional allegations. This finding stands in stark contrast to prior research on jurors' evaluation of adults' testimony that includes implausible details. Future research in this area will help to elucidate the conditions under which the presentation of truncated testimony may or may not influence juror decision-making. Copyright © 2016 John Wiley & Sons, Ltd. PMID:26879737

  16. 12 CFR Appendix D to Part 229 - Indorsement, Reconverting Bank Identification, and Truncating Bank Identification Standards

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ..., and Truncating Bank Identification Standards D Appendix D to Part 229 Banks and Banking FEDERAL... COLLECTION OF CHECKS (REGULATION CC) Pt. 229, App. D Appendix D to Part 229—Indorsement, Reconverting Bank... sequence number; (C) A telephone number for receipt of notification of large-dollar returned checks; and...

  17. Rotating ice blocks

    NASA Astrophysics Data System (ADS)

    Dorbolo, Stephane; Adami, Nicolas; Grasp Team

    2014-11-01

    The motion of ice discs released at the surface of a thermalized bath was investigated. As observed in some rare events in the Nature, the discs start spinning spontaneously. The motor of this motion is the cooling of the water close to the ice disc. As the density of water is maximum at 4°C, a downwards flow is generated from the surface of the ice block to the bottom. This flow generates the rotation of the disc. The speed of rotation depends on the mass of the ice disc and on the temperature of the bath. A model has been constructed to study the influence of the temperature of the bath. Finally, ice discs were put on a metallic plate. Again, a spontaneous rotation was observed. FNRS is thanked for financial support.

  18. Interpleural block - part 1.

    PubMed

    Dravid, R M; Paul, R E

    2007-10-01

    Interpleural blockade is effective in treating unilateral surgical and nonsurgical pain from the chest and upper abdomen in both the acute and chronic settings. It has been shown to provide safe, high-quality analgesia after cholecystectomy, thoracotomy, renal and breast surgery, and for certain invasive radiological procedures of the renal and hepatobiliary systems. It has also been used successfully in the treatment of pain from multiple rib fractures, herpes zoster, complex regional pain syndromes, thoracic and abdominal cancer, and pancreatitis. The technique is simple to learn and has both few contra-indications and a low incidence of complications. In the first of two reviews, the authors cover the history, taxonomy and anatomical considerations, the spread of local anaesthetic, and the mechanism of action, physiological, pharmacological and technical considerations in the performance of the block. PMID:17845657

  19. Radiation Blocking Lenses

    NASA Technical Reports Server (NTRS)

    1993-01-01

    The Biomedical Optical Company of America's Eagle 475 lens absorbs 100 percent of all photowavelengths considered hazardous to eye tissue, including ultraviolet and blue light, which are considered contributors to cataract and age-related macular degeneration. The lens absorbs hazardous wavelengths, but allows a higher percentage of visually useful areas of the spectrum to pass through. Polarization blocks out irritating glint and glare and heightens visual acuity. The Eagle 475 sunglasses are the latest in a series of spinoffs that originated at the Jet Propulsion Laboratory where two scientists developed a protective, welding curtain that filtered out harmful irradiance. The result was a commercial curtain that absorbs filters and scatters light, providing protection for personnel in welding areas. Further research focused on protective industrial glasses and later on consumer products.

  20. Blanket integrated blocking diodes

    NASA Astrophysics Data System (ADS)

    Uebele, P.; Kasper, C.; Rasch, K.-D.

    1986-11-01

    Two types of large area protection diodes for integration in solar arrays were developed in planar technology. For application in a bus voltage concept of V sub bus = 80 V a p-doped blanket integrated blocking diode (p-IBD) was developed with V sub rev = 120 V, whereas for the high voltage concept of V sub bus = 160 V a n-IBD with V sub rev = 250 V was developed. Application as blanket integrated shunt diodes is recommended. The optimized rearside diffusion provides a low forward voltage drop in the temperature range of minus 100 to plus 150 C. As a consequence of planar technology metallized coverglasses have to be used to minimize the photocurrent.

  1. Spintronics: Conceptual Building Blocks

    NASA Astrophysics Data System (ADS)

    Ansermet, J.-Ph.

    The purpose of this introduction to spintronics is to provide some elementary description of its conceptual building blocks. Thus, it is intended for a newcomer to the field. After recalling rudimentary descriptions of spin precession and spin relaxation, spin-dependent transport is treated within the Boltzmann formalism. This suffices to introduce key notions such as the spin asymmetry of the conductivities in the two-current model, the spin diffusion length, and spin accumulation. Two basic mechanisms of spin relaxation are then presented, one arising from spin-orbit scattering and the other from electron-magnon collisions. Finally, the action of a spin-polarized current on magnetization is presented in a thermodynamics framework. This introduces the notion of spin torque and the characteristic length scale over which the transverse spin polarization of conduction electron decays as it is injected into a magnet.

  2. Block merging for quadtree-based partitioning in HEVC

    NASA Astrophysics Data System (ADS)

    Bross, Benjamin; Oudin, Simon; Helle, Philipp; Marpe, Detlev; Wiegand, Thomas

    2012-10-01

    With the prospective High Effciency Video Coding (HEVC) standard as jointly developed by ITU-T VCEG and ISO/IEC MPEG, a new step in video compression capability is achieved. Technically, HEVC is a hybrid video-coding approach using quadtree-based block partitioning together with motion-compensated prediction. Even though a high degree of adaptability is achieved by quadtree-based block partitioning, this approach is intrinsically tied to certain drawbacks which may result in redundant sets of motion parameters to be transmitted. In order to remove those redundancies, a block-merging algorithm for HEVC is proposed. This algorithm generates a single motion-parameter set for a whole region of contiguous motion-compensated blocks. Simulation results show that the proposed merging technique works more effciently than a conceptually similar direct mode.

  3. Large Block Test Final Report

    SciTech Connect

    Lin, W

    2001-12-01

    This report documents the Large-Block Test (LBT) conducted at Fran Ridge near Yucca Mountain, Nevada. The LBT was a thermal test conducted on an exposed block of middle non-lithophysal Topopah Spring tuff (Tptpmn) and was designed to assist in understanding the thermal-hydrological-mechanical-chemical (THMC) processes associated with heating and then cooling a partially saturated fractured rock mass. The LBT was unique in that it was a large (3 x 3 x 4.5 m) block with top and sides exposed. Because the block was exposed at the surface, boundary conditions on five of the six sides of the block were relatively well known and controlled, making this test both easier to model and easier to monitor. This report presents a detailed description of the test as well as analyses of the data and conclusions drawn from the test. The rock block that was tested during the LBT was exposed by excavation and removal of the surrounding rock. The block was characterized and instrumented, and the sides were sealed and insulated to inhibit moisture and heat loss. Temperature on the top of the block was also controlled. The block was heated for 13 months, during which time temperature, moisture distribution, and deformation were monitored. After the test was completed and the block cooled down, a series of boreholes were drilled, and one of the heater holes was over-cored to collect samples for post-test characterization of mineralogy and mechanical properties. Section 2 provides background on the test. Section 3 lists the test objectives and describes the block site, the site configuration, and measurements made during the test. Section 3 also presents a chronology of events associated with the LBT, characterization of the block, and the pre-heat analyses of the test. Section 4 describes the fracture network contained in the block. Section 5 describes the heating/cooling system used to control the temperature in the block and presents the thermal history of the block during the test

  4. Adaptive Development

    NASA Technical Reports Server (NTRS)

    2005-01-01

    The goal of this research is to develop and demonstrate innovative adaptive seal technologies that can lead to dramatic improvements in engine performance, life, range, and emissions, and enhance operability for next generation gas turbine engines. This work is concentrated on the development of self-adaptive clearance control systems for gas turbine engines. Researchers have targeted the high-pressure turbine (HPT) blade tip seal location for following reasons: Current active clearance control (ACC) systems (e.g., thermal case-cooling schemes) cannot respond to blade tip clearance changes due to mechanical, thermal, and aerodynamic loads. As such they are prone to wear due to the required tight running clearances during operation. Blade tip seal wear (increased clearances) reduces engine efficiency, performance, and service life. Adaptive sealing technology research has inherent impact on all envisioned 21st century propulsion systems (e.g. distributed vectored, hybrid and electric drive propulsion concepts).

  5. Improved ultrasonic standard reference blocks

    NASA Technical Reports Server (NTRS)

    Eitzen, D. G.; Sushinsky, G. F.; Chwirut, D. J.; Bechtoldt, C. J.; Ruff, A. W.

    1976-01-01

    A program to improve the quality, reproducibility and reliability of nondestructive testing through the development of improved ASTM-type ultrasonic reference standards is described. Reference blocks of aluminum, steel, and titanium alloys are to be considered. Equipment representing the state-of-the-art in laboratory and field ultrasonic equipment was obtained and evaluated. RF and spectral data on ten sets of ultrasonic reference blocks have been taken as part of a task to quantify the variability in response from nominally identical blocks. Techniques for residual stress, preferred orientation, and micro-structural measurements were refined and are applied to a reference block rejected by the manufacturer during fabrication in order to evaluate the effect of metallurgical condition on block response. New fabrication techniques for reference blocks are discussed and ASTM activities are summarized.

  6. What Are Nerve Blocks for Headache?

    MedlinePlus

    ... nerve blocks for headache? Print Email What are nerve blocks for headache? ACHE Newsletter Sign up for ... entering your e-mail address below. What are nerve blocks for headache? A nerve block is the ...

  7. Covariant approaches to superconformal blocks

    NASA Astrophysics Data System (ADS)

    Fitzpatrick, A. Liam; Kaplan, Jared; Khandker, Zuhair U.; Li, Daliang; Poland, David; Simmons-Duffin, David

    2014-08-01

    We develop techniques for computing superconformal blocks in 4d superconformal field theories. First we study the super-Casimir differential equation, deriving simple new expressions for superconformal blocks for 4-point functions containing chiral operators in theories with -extended supersymmetry. We also reproduce these results by extending the "shadow formalism" of Ferrara, Gatto, Grillo, and Parisi to supersymmetric theories, where superconformal blocks can be represented as superspace integrals of three-point functions multiplied by shadow three-point functions.

  8. 31 CFR 589.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 589.301 Section 589.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY UKRAINE RELATED SANCTIONS...

  9. 31 CFR 544.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 544.301 Section 544.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY WEAPONS OF MASS DESTRUCTION...

  10. 31 CFR 544.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 544.301 Section 544.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY WEAPONS OF MASS DESTRUCTION...

  11. 31 CFR 544.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 544.301 Section 544.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY WEAPONS OF MASS DESTRUCTION...

  12. 31 CFR 544.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 544.301 Section 544.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY WEAPONS OF MASS DESTRUCTION...

  13. 31 CFR 544.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Blocked account; blocked property. 544.301 Section 544.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY WEAPONS OF MASS...

  14. 31 CFR 576.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 576.301 Section 576.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRAQ STABILIZATION AND INSURGENCY...

  15. 31 CFR 576.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 576.301 Section 576.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRAQ STABILIZATION AND INSURGENCY...

  16. 31 CFR 576.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 576.301 Section 576.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRAQ STABILIZATION AND INSURGENCY...

  17. 31 CFR 576.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 576.301 Section 576.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRAQ STABILIZATION AND INSURGENCY...

  18. 31 CFR 558.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 558.301 Section 558.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY SOUTH SUDAN SANCTIONS REGULATIONS...

  19. 31 CFR 545.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Blocked account; blocked property. 545.301 Section 545.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY TALIBAN (AFGHANISTAN)...

  20. 31 CFR 510.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 510.301 Section 510.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY NORTH KOREA SANCTIONS REGULATIONS...

  1. 31 CFR 510.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 510.301 Section 510.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY NORTH KOREA SANCTIONS REGULATIONS...

  2. 31 CFR 552.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 552.301 Section 552.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY YEMEN SANCTIONS REGULATIONS...

  3. 31 CFR 552.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 552.301 Section 552.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY YEMEN SANCTIONS REGULATIONS...

  4. 31 CFR 594.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Blocked account; blocked property. 594.301 Section 594.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY GLOBAL TERRORISM...

  5. 31 CFR 541.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Blocked account; blocked property. 541.301 Section 541.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ZIMBABWE SANCTIONS...

  6. 31 CFR 562.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 562.301 Section 562.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRANIAN HUMAN RIGHTS ABUSES...

  7. 31 CFR 562.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 562.301 Section 562.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRANIAN HUMAN RIGHTS ABUSES SANCTIONS REGULATIONS General Definitions §...

  8. 31 CFR 562.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 562.301 Section 562.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRANIAN HUMAN RIGHTS ABUSES...

  9. 31 CFR 562.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 562.301 Section 562.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY IRANIAN HUMAN RIGHTS ABUSES SANCTIONS REGULATIONS General Definitions §...

  10. 31 CFR 548.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 31 Money and Finance: Treasury 3 2010-07-01 2010-07-01 false Blocked account; blocked property. 548.301 Section 548.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY BELARUS SANCTIONS...

  11. Block 3. Central view of Block 3 observed from the ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Block 3. Central view of Block 3 observed from the west to the east. This photograph reveals the alignment of trees within the central path of the park. In addition, this photograph exposes broken bricks aligning tree beds - Skyline Park, 1500-1800 Arapaho Street, Denver, Denver County, CO

  12. 31 CFR 593.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 593.301 Section 593.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY FORMER LIBERIAN REGIME OF CHARLES...

  13. 31 CFR 549.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 549.301 Section 549.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY LEBANON SANCTIONS REGULATIONS...

  14. 31 CFR 549.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 549.301 Section 549.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY LEBANON SANCTIONS REGULATIONS...

  15. 31 CFR 549.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 549.301 Section 549.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY LEBANON SANCTIONS REGULATIONS...

  16. 31 CFR 549.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 549.301 Section 549.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY LEBANON SANCTIONS REGULATIONS...

  17. 31 CFR 510.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 510.301 Section 510.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY NORTH KOREA SANCTIONS REGULATIONS...

  18. 31 CFR 541.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 31 Money and Finance:Treasury 3 2013-07-01 2013-07-01 false Blocked account; blocked property. 541.301 Section 541.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ZIMBABWE SANCTIONS REGULATIONS...

  19. 31 CFR 541.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 31 Money and Finance:Treasury 3 2011-07-01 2011-07-01 false Blocked account; blocked property. 541.301 Section 541.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ZIMBABWE SANCTIONS REGULATIONS...

  20. 31 CFR 541.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 31 Money and Finance:Treasury 3 2012-07-01 2012-07-01 false Blocked account; blocked property. 541.301 Section 541.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ZIMBABWE SANCTIONS REGULATIONS...

  1. 31 CFR 541.301 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 31 Money and Finance:Treasury 3 2014-07-01 2014-07-01 false Blocked account; blocked property. 541.301 Section 541.301 Money and Finance: Treasury Regulations Relating to Money and Finance (Continued) OFFICE OF FOREIGN ASSETS CONTROL, DEPARTMENT OF THE TREASURY ZIMBABWE SANCTIONS REGULATIONS...

  2. Adapting Animals.

    ERIC Educational Resources Information Center

    Wedman, John; Wedman, Judy

    1985-01-01

    The "Animals" program found on the Apple II and IIe system master disk can be adapted for use in the mathematics classroom. Instructions for making the necessary changes and suggestions for using it in lessons related to geometric shapes are provided. (JN)

  3. Adaptive Thresholds

    SciTech Connect

    Bremer, P. -T.

    2014-08-26

    ADAPT is a topological analysis code that allow to compute local threshold, in particular relevance based thresholds for features defined in scalar fields. The initial target application is vortex detection but the software is more generally applicable to all threshold based feature definitions.

  4. Adaptive homeostasis.

    PubMed

    Davies, Kelvin J A

    2016-06-01

    Homeostasis is a central pillar of modern Physiology. The term homeostasis was invented by Walter Bradford Cannon in an attempt to extend and codify the principle of 'milieu intérieur,' or a constant interior bodily environment, that had previously been postulated by Claude Bernard. Clearly, 'milieu intérieur' and homeostasis have served us well for over a century. Nevertheless, research on signal transduction systems that regulate gene expression, or that cause biochemical alterations to existing enzymes, in response to external and internal stimuli, makes it clear that biological systems are continuously making short-term adaptations both to set-points, and to the range of 'normal' capacity. These transient adaptations typically occur in response to relatively mild changes in conditions, to programs of exercise training, or to sub-toxic, non-damaging levels of chemical agents; thus, the terms hormesis, heterostasis, and allostasis are not accurate descriptors. Therefore, an operational adjustment to our understanding of homeostasis suggests that the modified term, Adaptive Homeostasis, may be useful especially in studies of stress, toxicology, disease, and aging. Adaptive Homeostasis may be defined as follows: 'The transient expansion or contraction of the homeostatic range in response to exposure to sub-toxic, non-damaging, signaling molecules or events, or the removal or cessation of such molecules or events.' PMID:27112802

  5. Characterizing the inverses of block tridiagonal, block Toeplitz matrices

    NASA Astrophysics Data System (ADS)

    Boffi, Nicholas M.; Hill, Judith C.; Reuter, Matthew G.

    2015-01-01

    We consider the inversion of block tridiagonal, block Toeplitz matrices and comment on the behaviour of these inverses as one moves away from the diagonal. Using matrix Möbius transformations, we first present an O(1) representation (with respect to the number of block rows and block columns) for the inverse matrix and subsequently use this representation to characterize the inverse matrix. There are four symmetry-distinct cases where the blocks of the inverse matrix (i) decay to zero on both sides of the diagonal, (ii) oscillate on both sides, (iii) decay on one side and oscillate on the other and (iv) decay on one side and grow on the other. This characterization exposes the necessary conditions for the inverse matrix to be numerically banded and may also aid in the design of preconditioners and fast algorithms. Finally, we present numerical examples of these matrix types.

  6. Classical Virasoro irregular conformal block

    NASA Astrophysics Data System (ADS)

    Rim, Chaiho; Zhang, Hong

    2015-07-01

    Virasoro irregular conformal block with arbitrary rank is obtained for the classical limit or equivalently Nekrasov-Shatashvili limit using the beta-deformed irregular matrix model (Penner-type matrix model for the irregular conformal block). The same result is derived using the generalized Mathieu equation which is equivalent to the loop equation of the irregular matrix model.

  7. MISR Center Block Time Tool

    Atmospheric Science Data Center

    2013-04-01

      MISR Center Block Time Tool The misr_time tool calculates the block center times for MISR Level 1B2 files. This is ... version of the IDL package or by using the IDL Virtual Machine application. The IDL Virtual Machine is bundled with IDL and is ...

  8. Blocking in multirate interconnection networks

    NASA Astrophysics Data System (ADS)

    Valdimarsson, Einir

    1994-02-01

    We present an extension of the classical methods used to evaluate blocking probability. This method is applicable to multirate circuit and fast packet/ATM switching systems. The analytical methods are presented and compared with simulation results using Benes networks as an example. Extensive simulation has been performed focusing on ways to reduce blocking to acceptable levels.

  9. Adjustable-Angle Drill Block

    NASA Technical Reports Server (NTRS)

    Gallimore, F. H.

    1986-01-01

    Adjustable angular drill block accurately transfers hole patterns from mating surfaces not normal to each other. Block applicable to transfer of nonperpendicular holes in mating contoured assemblies in aircraft industry. Also useful in general manufacturing to transfer mating installation holes to irregular and angular surfaces.

  10. Block Transfer Agreement Evaluation Project

    ERIC Educational Resources Information Center

    Bastedo, Helena

    2010-01-01

    The objective of this project is to evaluate for the British Columbia Council on Admissions and Transfer (BCCAT) the effectiveness of block transfer agreements (BTAs) in the BC Transfer System and recommend steps to be taken to improve their effectiveness. Findings of this study revealed that institutions want to expand block credit transfer;…

  11. A computer program for determining truncation error coefficients for Runge-Kutta methods

    NASA Technical Reports Server (NTRS)

    Horn, M. K.

    1980-01-01

    The basic structure of a program to generate the truncation error coefficients for Runge-Kutta (RK) methods is reformulated to reduce storage requirements significantly and to accommodate variable dimensioning. This FORTRAN program, SUBROUTINE RKEQ, determines truncation error coefficients for RK algorithms for orders 1 through 10 and extends the order of coefficients through 12 with the 11th- and 12th-order terms determined following the patterns used to establish the lower order coefficients. Both subroutines (the original and RKEQ) are also written to treat RK m-fold methods which utilize m known derivatives of f to increase the order of the algorithm. Setting m = 0 gives the classical RK algorithm.

  12. Hollow circular-truncated cone resonator and its hollow variable biconical laser beam

    NASA Astrophysics Data System (ADS)

    Liu, Jinglun; Chen, Mei; Wang, Qionghua; Sun, Nianchun

    2014-05-01

    To obtain a hollow variable biconical laser beam (HVBLB), a CO2 laser having a hollow circular-truncated cone resonator (HCTCR) is presented. This HCTCR comprises a rotationally symmetric total-reflecting concave mirror at the bottom, a rotationally symmetric part-reflecting convex mirror at the top, and a hollow circular-truncated cone discharge tube at the middle. The cross section of this generated biconical laser beam changes from annulus to circular to annulus and the size of this cross section from big to small to large as the propagation distance increases. So, a kind of laser beam with variable center intensity from zero to peak value to zero is obtained and is known as HVBLB. Due to the inclusion of part of the hollow laser beam (HLB) and solid laser beam, this HVBLB requires no additional beam-shaping element and has broad applications such as optical trapping and commercial manufacturing.

  13. Truncated feature representation for automatic target detection using transformed data-based decomposition

    NASA Astrophysics Data System (ADS)

    Riasati, Vahid R.

    2016-05-01

    In this work, the data covariance matrix is diagonalized to provide an orthogonal bases set using the eigen vectors of the data. The eigen-vector decomposition of the data is transformed and filtered in the transform domain to truncate the data for robust features related to a specified set of targets. These truncated eigen features are then combined and reconstructed to utilize in a composite filter and consequently utilized for the automatic target detection of the same class of targets. The results associated with the testing of the current technique are evaluated using the peak-correlation and peak-correlation energy metrics and are presented in this work. The inverse transformed eigen-bases of the current technique may be thought of as an injected sparsity to minimize data in representing the skeletal data structure information associated with the set of targets under consideration.

  14. Truncated shifted pareto distribution in assessing size distribution of oil and gas fields

    SciTech Connect

    Houghton, J.C.

    1988-11-01

    The truncated shifted Pareto (TSP) distribution, a variant of the two-parameter Pareto distribution, in which one parameter is added to shift the distribution right and left and the right-hand side is truncated, is used to model size distributions of oil and gas fields for resource assessment. Assumptions about limits to the left-hand and right-hand side reduce the number of parameters to two. The TSP distribution has advantages over the more customary lognormal distribution because it has a simple analytic expression, allowing exact computation of several statistics of interest, has a J-shape, and has more flexibility in the thickness of the right-hand tail. Oil field sizes from the Minnelusa play in the Powder River Basin, Wyoming and Montana, are used as a case study. Probability plotting procedures allow easy visualization of the fit and help the assessment.

  15. Truncated Wigner theory of coherent Ising machines based on degenerate optical parametric oscillator network

    NASA Astrophysics Data System (ADS)

    Maruo, Daiki; Utsunomiya, Shoko; Yamamoto, Yoshihisa

    2016-08-01

    We present the quantum theory of coherent Ising machines based on networks of degenerate optical parametric oscillators (DOPOs). In a simple model consisting of two coupled DOPOs, both positive-P representation and truncated Wigner representation predict quantum correlation and inseparability between the two DOPOs in spite of the open-dissipative nature of the system. Here, we apply the truncated Wigner representation method to coherent Ising machines with thermal, vacuum, and squeezed reservoir fields. We find that the probability of finding the ground state of a one-dimensional Ising model increases substantially as a result of reducing excess thermal noise and squeezing the incident vacuum fluctuation on the out-coupling port.

  16. Expression of 4 truncated fragments of Pasteurella multocida toxin and their immunogenicity

    PubMed Central

    Seo, Jayoung; Pyo, Hyoju; Lee, Semi; Lee, Jaeil; Kim, Taejung

    2009-01-01

    Pasteurella multocida toxin (PMT) is a poor antigen that becomes more immunogenic after its native structure has been destroyed. In contrast, partially truncated PMT proteins, which are predicted to be good antigens when used as a vaccine, might be used to improve the control of atrophic rhinitis in pigs. In this study, 4 truncated PMT fragments were expressed in Escherichia coli, and those 4 fragments were inoculated into mice to produce the polyclonal antibodies. The results of an enzyme-linked immunosorbent assay (ELISA) revealed that #1 and #4 fragments were the most immunogenic. Immunized mice were subsequently challenged intraperitoneally with P. multocida type D. Five of the eight #1 fragment-immunized mice showed some protection against death and bacterial clearance. Pigs immunized with #1 fragment produced no or mild atrophic rhinitis (turbinate conchal score) after challenge, suggesting that this #1 fragment could be a good candidate for a subunit recombinant-type vaccine. PMID:19794890

  17. Onsets of hierarchy truncation and self-consistent Born approximation with quantum mechanics prescriptions invariance

    NASA Astrophysics Data System (ADS)

    Zhang, Hou-Dao; Yan, YiJing

    2015-12-01

    The issue of efficient hierarchy truncation is related to many approximate theories. In this paper, we revisit this issue from both the numerical efficiency and quantum mechanics prescription invariance aspects. The latter requires that the truncation approximation made in Schrödinger picture, such as the quantum master equations and their self-consistent-Born-approximation improvements, should be transferable to their Heisenberg-picture correspondences, without further approximations. We address this issue with the dissipaton equation of motion (DEOM), which is a unique theory for the dynamics of not only reduced systems but also hybrid bath environments. We also highlight the DEOM theory is not only about how its dynamical variables evolve in time, but also the underlying dissipaton algebra. We demonstrate this unique feature of DEOM with model systems and report some intriguing nonlinear Fano interferences characteristics that are experimentally measurable.

  18. Onsets of hierarchy truncation and self–consistent Born approximation with quantum mechanics prescriptions invariance

    SciTech Connect

    Zhang, Hou-Dao; Yan, YiJing

    2015-12-07

    The issue of efficient hierarchy truncation is related to many approximate theories. In this paper, we revisit this issue from both the numerical efficiency and quantum mechanics prescription invariance aspects. The latter requires that the truncation approximation made in Schrödinger picture, such as the quantum master equations and their self–consistent–Born–approximation improvements, should be transferable to their Heisenberg–picture correspondences, without further approximations. We address this issue with the dissipaton equation of motion (DEOM), which is a unique theory for the dynamics of not only reduced systems but also hybrid bath environments. We also highlight the DEOM theory is not only about how its dynamical variables evolve in time, but also the underlying dissipaton algebra. We demonstrate this unique feature of DEOM with model systems and report some intriguing nonlinear Fano interferences characteristics that are experimentally measurable.

  19. Use of the truncated shifted Pareto distribution in assessing size distribution of oil and gas fields

    USGS Publications Warehouse

    Houghton, J.C.

    1988-01-01

    The truncated shifted Pareto (TSP) distribution, a variant of the two-parameter Pareto distribution, in which one parameter is added to shift the distribution right and left and the right-hand side is truncated, is used to model size distributions of oil and gas fields for resource assessment. Assumptions about limits to the left-hand and right-hand side reduce the number of parameters to two. The TSP distribution has advantages over the more customary lognormal distribution because it has a simple analytic expression, allowing exact computation of several statistics of interest, has a "J-shape," and has more flexibility in the thickness of the right-hand tail. Oil field sizes from the Minnelusa play in the Powder River Basin, Wyoming and Montana, are used as a case study. Probability plotting procedures allow easy visualization of the fit and help the assessment. ?? 1988 International Association for Mathematical Geology.

  20. Truncated-determinant diagrammatic Monte Carlo for fermions with contact interaction

    NASA Astrophysics Data System (ADS)

    Bourovski, Evgueni; Prokof'Ev, Nikolay; Svistunov, Boris

    2004-11-01

    For some models of interacting fermions the known solution to the notorious sign problem in Monte Carlo (MC) simulations is to work with macroscopic fermionic determinants; the price, however, is a macroscopic scaling of the numerical effort spent on elementary local updates. We find that the ratio of two macroscopic determinants can be found with any desired accuracy by considering truncated (local in space and time) matices. In this respect, MC for interacting fermionic systems becomes similar to that for the sign-problem-free bosonic systems with system-size independent update cost. We demonstrate the utility of the truncated-determinant method by simulating the attractive Hubbard model within the MC scheme based on partially summed Feynman diagrams. We conjecture that similar approach may be useful in other implementations of the sign-free determinant schemes.

  1. Onsets of hierarchy truncation and self-consistent Born approximation with quantum mechanics prescriptions invariance.

    PubMed

    Zhang, Hou-Dao; Yan, YiJing

    2015-12-01

    The issue of efficient hierarchy truncation is related to many approximate theories. In this paper, we revisit this issue from both the numerical efficiency and quantum mechanics prescription invariance aspects. The latter requires that the truncation approximation made in Schrödinger picture, such as the quantum master equations and their self-consistent-Born-approximation improvements, should be transferable to their Heisenberg-picture correspondences, without further approximations. We address this issue with the dissipaton equation of motion (DEOM), which is a unique theory for the dynamics of not only reduced systems but also hybrid bath environments. We also highlight the DEOM theory is not only about how its dynamical variables evolve in time, but also the underlying dissipaton algebra. We demonstrate this unique feature of DEOM with model systems and report some intriguing nonlinear Fano interferences characteristics that are experimentally measurable. PMID:26646874

  2. Recombinant truncated and microsomal heme oxygenase-1 and -2: differential sensitivity to inhibitors.

    PubMed

    Vukomanovic, Dragic; McLaughlin, Brian; Rahman, Mona N; Vlahakis, Jason Z; Roman, Gheorghe; Dercho, Ryan A; Kinobe, Robert T; Hum, Maaike; Brien, James F; Jia, Zongchao; Szarek, Walter A; Nakatsu, Kanji

    2010-04-01

    Recombinant truncated forms of heme oxygenase-1 and -2 (HO-1 and HO-2) were compared with their crude microsomal counterparts from brain and spleen tissue of adult male rats with respect to their inhibition by azole-based, nonporphyrin HO inhibitors. The drugs tested were an imidazole-alcohol, an imidazole-dioxolane, and a triazole-ketone. Both the recombinant and crude forms of HO-2 were similarly inhibited by the 3 drugs. The crude microsomal spleen form of HO-1 was more susceptible to inhibition than was the truncated recombinant form. This difference is attributed to the extra amino acids in the full-length enzyme. These observations may be relevant in the design of drugs as inhibitors of HO and other membrane proteins. PMID:20555417

  3. Pulse-mode quantum projection synthesis: Effects of mode mismatch on optical state truncation and preparation

    SciTech Connect

    Oezdemir, Sahin Kaya; Koashi, Masato; Miranowicz, Adam; Imoto, Nobuyuki

    2002-11-01

    Quantum projection synthesis can be used for phase-probability-distribution measurement and optical-state truncation and preparation. The method relies on interfering optical light beams, which is a major challenge in experiments performed by pulsed light sources. In the pulsed regime, the time frequency overlap of the interfering light beams has a major impact on the efficiency of the method. In this paper, the pulse-mode projection-synthesis approach is developed, the mode structures of interfering light beams are characterized, and the effect of this overlap on the fidelity of optical-state truncation and preparation is investigated. By introducing the positive-operator-valued measure for the detection events in the scheme, the effect of mode mismatch between the photon-counting detectors and the incident light beams is also presented.

  4. Analytical and experimental study of axisymmetric truncated plug nozzle flow fields

    NASA Technical Reports Server (NTRS)

    Muller, T. J.; Sule, W. P.; Fanning, A. E.; Giel, T. V.; Galanga, F. L.

    1972-01-01

    Experimental and analytical investigation of the flow field and base pressure of internal-external-expansion truncated plug nozzles are discussed. Experimental results for two axisymmetric, conical plug-cylindrical shroud, truncated plug nozzles are presented for both open and closed wake operations. These results include extensive optical and pressure data covering nozzle flow field and base pressure characteristics, diffuser effects, lip shock strength, Mach disc behaviour, and the recompression and reverse flow regions. Transonic experiments for a special planar transonic section are presented. An extension of the analytical method of Hall and Mueller to include the internal shock wave from the shroud exit is presented for closed wake operation. Results of this analysis include effects on the flow field and base pressure of ambient pressure ratio, nozzle geometry, and the ratio of specific heats. Static thrust is presented as a function of ambient pressure ratio and nozzle geometry. A new transonic solution method is also presented.

  5. Comparison of truncation error of finite-difference and finite-volume formulations of convection terms

    NASA Technical Reports Server (NTRS)

    Leonard, B. P.

    1992-01-01

    Judging by errors in the computational-fluid-dynamics literature in recent years, it is not generally well understood that (above first-order) there are significant differences in spatial truncation error between formulations of convection involving a finite-difference approximation of the first derivative, on the one hand, and a finite-volume model of flux differences across a control-volume cell, on the other. The difference between the two formulations involves a second-order truncation-error term (proportional to the third-derivative of the convected variable). Hence, for example, a third (or higher) order finite-difference approximation for the first-derivative convection term is only second-order accurate when written in conservative control-volume form as a finite-volume formulation, and vice versa.

  6. THE INITIAL MASS FUNCTION MODELED BY A LEFT TRUNCATED BETA DISTRIBUTION

    SciTech Connect

    Zaninetti, Lorenzo

    2013-03-10

    The initial mass function for stars is usually fitted by three straight lines, which means it has seven parameters. The presence of brown dwarfs (BDs) increases the number of straight lines to four and the number of parameters to nine. Another common fitting function is the lognormal distribution, which is characterized by two parameters. This paper is devoted to demonstrating the advantage of introducing a left truncated beta probability density function, which is characterized by four parameters. The constant of normalization, the mean, the mode, and the distribution function are calculated for the left truncated beta distribution. The normal beta distribution that results from convolving independent normally distributed and beta distributed components is also derived. The chi-square test and the Kolmogorov-Smirnov test are performed on a first sample of stars and BDs that belongs to the massive young cluster NGC 6611, and on a second sample that represents the masses of the stars of the cluster NGC 2362.

  7. Ab Initio Study of 40Ca with an Importance Truncated No-Core Shell Model

    SciTech Connect

    Roth, R; Navratil, P

    2007-05-22

    We propose an importance truncation scheme for the no-core shell model, which enables converged calculations for nuclei well beyond the p-shell. It is based on an a priori measure for the importance of individual basis states constructed by means of many-body perturbation theory. Only the physically relevant states of the no-core model space are considered, which leads to a dramatic reduction of the basis dimension. We analyze the validity and efficiency of this truncation scheme using different realistic nucleon-nucleon interactions and compare to conventional no-core shell model calculations for {sup 4}He and {sup 16}O. Then, we present the first converged calculations for the ground state of {sup 40}Ca within no-core model spaces including up to 16{h_bar}{Omega}-excitations using realistic low-momentum interactions. The scheme is universal and can be easily applied to other quantum many-body problems.

  8. Improved ultrasonic standard reference blocks

    NASA Technical Reports Server (NTRS)

    Eitzen, D. G.

    1975-01-01

    A program to improve the quality, reproducibility and reliability of nondestructive testing through the development of improved ASTM-type ultrasonic reference standards is described. Reference blocks of aluminum, steel, and titanium alloys were considered. Equipment representing the state-of-the-art in laboratory and field ultrasonic equipment was obtained and evaluated. Some RF and spectral data on ten sets of ultrasonic reference blocks were taken as part of a task to quantify the variability in response from nominally identical blocks. Techniques for residual stress, preferred orientation, and microstructural measurements were refined and are applied to a reference block rejected by the manufacturer during fabrication in order to evaluate the effect of metallurgical condition on block response.

  9. A class of spherical, truncated, anisotropic models for application to globular clusters

    NASA Astrophysics Data System (ADS)

    de Vita, Ruggero; Bertin, Giuseppe; Zocchi, Alice

    2016-04-01

    Recently, a class of non-truncated, radially anisotropic models (the so-called f(ν)-models), originally constructed in the context of violent relaxation and modelling of elliptical galaxies, has been found to possess interesting qualities in relation to observed and simulated globular clusters. In view of new applications to globular clusters, we improve this class of models along two directions. To make them more suitable for the description of small stellar systems hosted by galaxies, we introduce a "tidal" truncation by means of a procedure that guarantees full continuity of the distribution function. The new fT(ν)-models are shown to provide a better fit to the observed photometric and spectroscopic profiles for a sample of 13 globular clusters studied earlier by means of non-truncated models; interestingly, the best-fit models also perform better with respect to the radial-orbit instability. Then, we design a flexible but simple two-component family of truncated models to study the separate issues of mass segregation and multiple populations. We do not aim at a fully realistic description of globular clusters to compete with the description currently obtained by means of dedicated simulations. The goal here is to try to identify the simplest models, that is, those with the smallest number of free parameters, but still have the capacity to provide a reasonable description for clusters that are evidently beyond the reach of one-component models. With this tool, we aim at identifying the key factors that characterize mass segregation or the presence of multiple populations. To reduce the relevant parameter space, we formulate a few physical arguments based on recent observations and simulations. A first application to two well-studied globular clusters is briefly described and discussed.

  10. Effects of truncating van der Waals interactions in lipid bilayer simulations

    SciTech Connect

    Huang, Kun; García, Angel E.

    2014-09-14

    In membrane simulations, it is known that truncating electrostatic interactions results in artificial ordering of lipids at the truncation distance. However, less attention has been paid to the effect of truncating van der Waals (VDW) interactions. Since the VDW potential decays as r{sup −6}, it is frequently neglected beyond a cutoff of around 1 nm. In some cases, analytical dispersion corrections appropriate for isotropic systems are applied to the pressure and the potential energy. In this work, we systematically study the effect of truncating VDW interactions at different cutoffs in 1,2-Dipalmitoyl-sn-glycero-3-phosphocholine bilayers with the Berger force field. We show that the area per lipid decreases systematically when the VDW cutoff (r{sub c}) increases. This dependence persists even when dispersion corrections are applied. Since the analytical form of the dispersion correction is only appropriate for isotropic systems, we suggest that a long VDW cutoff should be used in preference over a short VDW cutoff. To determine the appropriate cutoff, we simulate liquid pentadecane with the Berger parameters and find that r{sub c} ≥ 1.4 nm is sufficient to reproduce the density and the heat of vaporization of pentadecane. Bilayers simulated with r{sub c} ≥ 1.4 nm show an improved agreement with experiments in both the form factors and the deuterium order parameters. Finally, we report that the VDW cutoff has a significant impact on the lipid flip-flop energetics and an inappropriate short VDW cutoff results in a bilayer that is prone to form water defects across the bilayer.

  11. A class of spherical, truncated, anisotropic models for application to globular clusters

    NASA Astrophysics Data System (ADS)

    de Vita, Ruggero; Bertin, Giuseppe; Zocchi, Alice

    2016-05-01

    Recently, a class of non-truncated, radially anisotropic models (the so-called f(ν)-models), originally constructed in the context of violent relaxation and modelling of elliptical galaxies, has been found to possess interesting qualities in relation to observed and simulated globular clusters. In view of new applications to globular clusters, we improve this class of models along two directions. To make them more suitable for the description of small stellar systems hosted by galaxies, we introduce a "tidal" truncation by means of a procedure that guarantees full continuity of the distribution function. The new fT(ν)-models are shown to provide a better fit to the observed photometric and spectroscopic profiles for a sample of 13 globular clusters studied earlier by means of non-truncated models; interestingly, the best-fit models also perform better with respect to the radial-orbit instability. Then, we design a flexible but simple two-component family of truncated models to study the separate issues of mass segregation and multiple populations. We do not aim at a fully realistic description of globular clusters to compete with the description currently obtained by means of dedicated simulations. The goal here is to try to identify the simplest models, that is, those with the smallest number of free parameters, but still have the capacity to provide a reasonable description for clusters that are evidently beyond the reach of one-component models. With this tool, we aim at identifying the key factors that characterize mass segregation or the presence of multiple populations. To reduce the relevant parameter space, we formulate a few physical arguments based on recent observations and simulations. A first application to two well-studied globular clusters is briefly described and discussed.

  12. The Janus-faced manifestations of homozygous familial hypobetalipoproteinemia due to apolipoprotein B truncations.

    PubMed

    Di Leo, Enza; Eminoglu, Tuba; Magnolo, Lucia; Bolkent, Musa Gökalp; Tümer, Leyla; Okur, Ilyas; Tarugi, Patrizia

    2015-01-01

    Familial hypobetalipoproteinemia is a codominant disorder characterized by low plasma levels of low-density lipoprotein cholesterol and apolipoprotein B (apoB), which in ∼50% of the cases is due to mutations in APOB gene. In most cases, these mutations cause the formation of truncated apoBs of various sizes, which have a reduced capacity to bind lipids and form lipoprotein particles. Here, we describe 2 children with severe hypobetalipoproteinemia found to be homozygous for novel APOB gene mutations. The first case (HBL-201) was an asymptomatic 13-year-old boy incidentally found to have slightly elevated serum transaminases associated with hepatic steatosis. He was homozygous for a truncated apoB (2211 amino acids, apoB-48.74) whose size is similar to that of wild-type apoB-48 (2152 amino acids) produced by the intestine. ApoB-48.74 is expected to be incorporated into chylomicrons in the intestine but might have a reduced capacity to form secretion-competent very low-density lipoprotein in the liver. The second patient (HBL-96) was a 6-month-old girl suspected to have abetalipoproteinemia, for the presence of chronic diarrhea, failure to thrive, extremely severe hypobetalipoproteinemia, and low plasma levels of vitamin E and vitamin A. She was homozygous for a nonsense mutation (Gln513*) resulting in a short truncated apoB (apoB-11.30), which is not secreted into the plasma. In this patient, the impaired chylomicron formation is responsible for the severe clinical manifestations and growth retardation. In homozygous familial hypobetalipoproteinemia, the capacity of truncated apoBs to form chylomicrons is the major factor, which affects the severity of the clinical manifestations. PMID:26073401

  13. A digital computer study of the buckling of shallow spherical caps and truncated hemispheres

    NASA Technical Reports Server (NTRS)

    Stilwell, W. C.; Ball, R. E.

    1972-01-01

    A study of the buckling of thin shells was conducted using a digital computer program for the geometrically nonlinear analysis of arbitrarily loaded shells of revolution. The objective was an evaluation of the program's applicability to bifurcation buckling and imperfection sensitivity analysis. Clamped spherical caps under pressure loading and clamped truncated hemispheres under axial tension were investigated. Buckling loads were determined for axisymmetric and nearly axisymmetric loads and are compared with previously published analytical results based on geometric imperfections.

  14. Effects of truncating van der Waals interactions in lipid bilayer simulations

    PubMed Central

    Huang, Kun; García, Angel E.

    2014-01-01

    In membrane simulations, it is known that truncating electrostatic interactions results in artificial ordering of lipids at the truncation distance. However, less attention has been paid to the effect of truncating van der Waals (VDW) interactions. Since the VDW potential decays as r−6, it is frequently neglected beyond a cutoff of around 1 nm. In some cases, analytical dispersion corrections appropriate for isotropic systems are applied to the pressure and the potential energy. In this work, we systematically study the effect of truncating VDW interactions at different cutoffs in 1,2-Dipalmitoyl-sn-glycero-3-phosphocholine bilayers with the Berger force field. We show that the area per lipid decreases systematically when the VDW cutoff (rc) increases. This dependence persists even when dispersion corrections are applied. Since the analytical form of the dispersion correction is only appropriate for isotropic systems, we suggest that a long VDW cutoff should be used in preference over a short VDW cutoff. To determine the appropriate cutoff, we simulate liquid pentadecane with the Berger parameters and find that rc ≥ 1.4 nm is sufficient to reproduce the density and the heat of vaporization of pentadecane. Bilayers simulated with rc ≥ 1.4 nm show an improved agreement with experiments in both the form factors and the deuterium order parameters. Finally, we report that the VDW cutoff has a significant impact on the lipid flip-flop energetics and an inappropriate short VDW cutoff results in a bilayer that is prone to form water defects across the bilayer. PMID:25217953

  15. A Case Study of Truncated Electrostatics for Simulation of Polyelectrolyte Brushes on GPU Accelerators

    SciTech Connect

    Nguyen, Trung D; Carrillo, Jan-Michael; Dobrynin, Andrey; Brown, W Michael

    2013-01-01

    Numerous issues have disrupted the trend for increasing computational performance with faster CPU clock frequencies. In order to exploit the potential performance of new computers, it is becoming increasingly desirable to re-evaluate computational physics methods and models with an eye towards towards approaches that allow for increased concurrency and data locality. The evaluation of long-range Coulombic interactions is a common bottleneck for molecular dynamics simulations. Enhanced truncation approaches have been proposed as an alternative method and are particularly well suited for many-core architectures and GPUs due to the inherent fine-grain parallelism that can be exploited. In this paper, we compare efficient truncation-based approximations to evaluation of electrostatic forces with the more traditional particle-particle particle-mesh (P3M) method for molecular dynamics simulation of polyelectrolyte brush layers. We show that with the use of GPU accelerators, large parallel simulations using P3M can be greater than 3 times faster due to a reduction in the mesh-size required. Alternatively, using a truncation-based scheme can improve performance even further. This approach can be up to 3.9 times faster than GPU-accelerated P3M for many polymer systems and results in accurate calculation of shear velocities and disjoining pressures for brush layers. For configurations with highly non-uniform charge distributions, however, we find that it is more efficient to use P3M; for these systems, computationally efficient parameterizations of the truncation-based approach do not produce accurate counterion density profiles or brush morphologies.

  16. Atrioventricular block after ASD closure

    PubMed Central

    Asakai, Hiroko; Weskamp, Sofia; Eastaugh, Lucas; d'Udekem, Yves; Pflaumer, Andreas

    2016-01-01

    Objective Secundum atrial septal defect (ASD) is a common congenital heart defect. There is limited data on both early and late atrioventricular (AV) block post ASD closure. The aim of this study was to determine the incidence and risk factors of AV block associated with ASD closure. Methods A retrospective analysis of all patients who underwent ASD closure either with a device or surgical method at the Royal Children's Hospital Melbourne between 1996 and 2010 was performed. Baseline demographics, procedural details and follow-up data were collected from medical records. Results A total of 378 patients were identified; 242 in the device group and 136 in the surgical group. Fourteen patients (3.7%) had AV block (1 with second degree and 13 with first degree) at a median follow-up of 28 months; 11/242 (4.5%) in the device group and 3/135 (2.2%) in the surgical group (p=0.39). Six patients had new-onset AV block after ASD closure. In the device subgroup, patients with AV block at follow-up had a larger indexed device size compared with those without (22 (15–31) vs 18(7–38), p=0.02). Multivariate analysis revealed the presence of AV block either pre procedure or post procedure to be the only variables associated with late AV block. Conclusions Late AV block in patients with repaired ASD is rare and most likely independent of the technique used. In the device subgroup, the only risk factor identified to be associated with late AV block was the presence of either preprocedural or postprocedural AV block, so long-term follow-up for these patients should be provided. PMID:27540418

  17. Connector adapter

    NASA Technical Reports Server (NTRS)

    Hacker, Scott C. (Inventor); Dean, Richard J. (Inventor); Burge, Scott W. (Inventor); Dartez, Toby W. (Inventor)

    2007-01-01

    An adapter for installing a connector to a terminal post, wherein the connector is attached to a cable, is presented. In an embodiment, the adapter is comprised of an elongated collet member having a longitudinal axis comprised of a first collet member end, a second collet member end, an outer collet member surface, and an inner collet member surface. The inner collet member surface at the first collet member end is used to engage the connector. The outer collet member surface at the first collet member end is tapered for a predetermined first length at a predetermined taper angle. The collet includes a longitudinal slot that extends along the longitudinal axis initiating at the first collet member end for a predetermined second length. The first collet member end is formed of a predetermined number of sections segregated by a predetermined number of channels and the longitudinal slot.

  18. Block rotation in western Turkey. 1. Observational evidence

    SciTech Connect

    Westaway, R. )

    1990-11-10

    Field observations and seismicity of the past century are used to deduce positions and slip senses of major active oblique normal faults in this region, which take up extension in the upper crustal brittle layer and allow fault-bounded blocks to rotate around vertical axes. The principal active normal faults in western Turkey strike roughly east-west near the Aegean coast, turning gradually toward westnorthwest-eastsoutheast strike across {approximately}200 km distance inland to the east. Slip vector azimuths indicate typical extension direction on these faults is {approximately}S18{degree}{plus minus}8W. They truncate a second set of faults with smaller displacement and roughly orthogonal strike and slip vector azimuth. As well as subdividing the brittle layer into blocks that show little different Neogene rotation around vertical axes. Some domains contain sets of major active oblique normal faults that bound blocks that are elongated, angular, and shaped like tilted dominoes. These faults take up extension, and can also take up rotation around vertical axes provided they and the blocks between them rotate around vertical axes at the same rate. Where adequate paleomagnetic observations are available, they indicate these domains have rotated counterclockwise, as expected by up to {approximately}40{degree}: Roughly equal to the change in strike of the principal set of active faults between the Aegean coast and the eastern edge of the actively extending zone. However, evidence is scarce for the right-lateral strike slip expected in some kinematic models on a set of oblique normal faults that takes up extension and counterclockwise rotation; instead, each fault appears to have the component of strike slip necessary to enable it, given its local strike, to slip in the direction in which the region is extending.

  19. Truncated hexa-octahedral magnetite crystals in ALH84001: presumptive biosignatures

    NASA Technical Reports Server (NTRS)

    Thomas-Keprta, K. L.; Clemett, S. J.; Bazylinski, D. A.; Kirschvink, J. L.; McKay, D. S.; Wentworth, S. J.; Vali, H.; Gibson, E. K. Jr; McKay, M. F.; Romanek, C. S.

    2001-01-01

    McKay et al. [(1996) Science 273, 924-930] suggested that carbonate globules in the meteorite ALH84001 contained the fossil remains of Martian microbes. We have characterized a subpopulation of magnetite (Fe(3)O(4)) crystals present in abundance within the Fe-rich rims of these carbonate globules. We find these Martian magnetites to be both chemically and physically identical to terrestrial, biogenically precipitated, intracellular magnetites produced by magnetotactic bacteria strain MV-1. Specifically, both magnetite populations are single-domain and chemically pure, and exhibit a unique crystal habit we describe as truncated hexa-octahedral. There are no known reports of inorganic processes to explain the observation of truncated hexa-octahedral magnetites in a terrestrial sample. In bacteria strain MV-1 their presence is therefore likely a product of Natural Selection. Unless there is an unknown and unexplained inorganic process on Mars that is conspicuously absent on the Earth and forms truncated hexa-octahedral magnetites, we suggest that these magnetite crystals in the Martian meteorite ALH84001 were likely produced by a biogenic process. As such, these crystals are interpreted as Martian magnetofossils and constitute evidence of the oldest life yet found.

  20. A flexible ratio regression approach for zero-truncated capture-recapture counts.

    PubMed

    Böhning, Dankmar; Rocchetti, Irene; Alfó, Marco; Holling, Heinz

    2016-09-01

    Capture-recapture methods are used to estimate the size of a population of interest which is only partially observed. In such studies, each member of the population carries a count of the number of times it has been identified during the observational period. In real-life applications, only positive counts are recorded, and we get a truncated at zero-observed distribution. We need to use the truncated count distribution to estimate the number of unobserved units. We consider ratios of neighboring count probabilities, estimated by ratios of observed frequencies, regardless of whether we have a zero-truncated or an untruncated distribution. Rocchetti et al. (2011) have shown that, for densities in the Katz family, these ratios can be modeled by a regression approach, and Rocchetti et al. (2014) have specialized the approach to the beta-binomial distribution. Once the regression model has been estimated, the unobserved frequency of zero counts can be simply derived. The guiding principle is that it is often easier to find an appropriate regression model than a proper model for the count distribution. However, a full analysis of the connection between the regression model and the associated count distribution has been missing. In this manuscript, we fill the gap and show that the regression model approach leads, under general conditions, to a valid count distribution; we also consider a wider class of regression models, based on fractional polynomials. The proposed approach is illustrated by analyzing various empirical applications, and by means of a simulation study. PMID:26864334

  1. Truncated hexa-octahedral magnetite crystals in ALH84001: Presumptive biosignatures

    PubMed Central

    Thomas-Keprta, Kathie L.; Clemett, Simon J.; Bazylinski, Dennis A.; Kirschvink, Joseph L.; McKay, David S.; Wentworth, Susan J.; Vali, Hojatollah; Gibson, Everett K.; McKay, Mary Fae; Romanek, Christopher S.

    2001-01-01

    McKay et al. [(1996) Science 273, 924–930] suggested that carbonate globules in the meteorite ALH84001 contained the fossil remains of Martian microbes. We have characterized a subpopulation of magnetite (Fe3O4) crystals present in abundance within the Fe-rich rims of these carbonate globules. We find these Martian magnetites to be both chemically and physically identical to terrestrial, biogenically precipitated, intracellular magnetites produced by magnetotactic bacteria strain MV-1. Specifically, both magnetite populations are single-domain and chemically pure, and exhibit a unique crystal habit we describe as truncated hexa-octahedral. There are no known reports of inorganic processes to explain the observation of truncated hexa-octahedral magnetites in a terrestrial sample. In bacteria strain MV-1 their presence is therefore likely a product of Natural Selection. Unless there is an unknown and unexplained inorganic process on Mars that is conspicuously absent on the Earth and forms truncated hexa-octahedral magnetites, we suggest that these magnetite crystals in the Martian meteorite ALH84001 were likely produced by a biogenic process. As such, these crystals are interpreted as Martian magnetofossils and constitute evidence of the oldest life yet found. PMID:11226210

  2. Truncated hexa-octahedral magnetite crystals in ALH84001: presumptive biosignatures.

    PubMed

    Thomas-Keprta, K L; Clemett, S J; Bazylinski, D A; Kirschvink, J L; McKay, D S; Wentworth, S J; Vali, H; Gibson, E K; McKay, M F; Romanek, C S

    2001-02-27

    McKay et al. [(1996) Science 273, 924-930] suggested that carbonate globules in the meteorite ALH84001 contained the fossil remains of Martian microbes. We have characterized a subpopulation of magnetite (Fe(3)O(4)) crystals present in abundance within the Fe-rich rims of these carbonate globules. We find these Martian magnetites to be both chemically and physically identical to terrestrial, biogenically precipitated, intracellular magnetites produced by magnetotactic bacteria strain MV-1. Specifically, both magnetite populations are single-domain and chemically pure, and exhibit a unique crystal habit we describe as truncated hexa-octahedral. There are no known reports of inorganic processes to explain the observation of truncated hexa-octahedral magnetites in a terrestrial sample. In bacteria strain MV-1 their presence is therefore likely a product of Natural Selection. Unless there is an unknown and unexplained inorganic process on Mars that is conspicuously absent on the Earth and forms truncated hexa-octahedral magnetites, we suggest that these magnetite crystals in the Martian meteorite ALH84001 were likely produced by a biogenic process. As such, these crystals are interpreted as Martian magnetofossils and constitute evidence of the oldest life yet found. PMID:11226210

  3. A truncated Levenberg-Marquardt algorithm for the calibration of highly parameterized nonlinear models

    SciTech Connect

    Finsterle, S.; Kowalsky, M.B.

    2010-10-15

    We propose a modification to the Levenberg-Marquardt minimization algorithm for a more robust and more efficient calibration of highly parameterized, strongly nonlinear models of multiphase flow through porous media. The new method combines the advantages of truncated singular value decomposition with those of the classical Levenberg-Marquardt algorithm, thus enabling a more robust solution of underdetermined inverse problems with complex relations between the parameters to be estimated and the observable state variables used for calibration. The truncation limit separating the solution space from the calibration null space is re-evaluated during the iterative calibration process. In between these re-evaluations, fewer forward simulations are required, compared to the standard approach, to calculate the approximate sensitivity matrix. Truncated singular values are used to calculate the Levenberg-Marquardt parameter updates, ensuring that safe small steps along the steepest-descent direction are taken for highly correlated parameters of low sensitivity, whereas efficient quasi-Gauss-Newton steps are taken for independent parameters with high impact. The performance of the proposed scheme is demonstrated for a synthetic data set representing infiltration into a partially saturated, heterogeneous soil, where hydrogeological, petrophysical, and geostatistical parameters are estimated based on the joint inversion of hydrological and geophysical data.

  4. Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting.

    PubMed

    Brink, Maartje C; van der Velden, Yme; de Leeuw, Wim; Mateos-Langerak, Julio; Belmont, Andrew S; van Driel, Roel; Verschure, Pernette J

    2006-01-01

    Packaging of the eukaryotic genome into higher order chromatin structures is tightly related to gene expression. Pericentromeric heterochromatin is typified by accumulations of heterochromatin protein 1 (HP1), methylation of histone H3 at lysine 9 (MeH3K9) and global histone deacetylation. HP1 interacts with chromatin by binding to MeH3K9 through the chromodomain (CD). HP1 dimerizes with itself and binds a variety of proteins through its chromoshadow domain. We have analyzed at the single cell level whether HP1 lacking its functional CD is able to induce heterochromatinization in vivo. We used a lac-operator array-based system in mammalian cells to target EGFP-lac repressor tagged truncated HP1alpha and HP1beta to a lac operator containing gene-amplified chromosome region in living cells. After targeting truncated HP1alpha or HP1beta we observe enhanced tri-MeH3K9 and recruitment of endogenous HP1alpha and HP1beta to the chromosome region. We show that CD-less HP1alpha can induce chromatin condensation, whereas the effect of truncated HP1beta is less pronounced. Our results demonstrate that after lac repressor-mediated targeting, HP1alpha and HP1beta without a functional CD are able to induce heterochromatinization. PMID:16283356

  5. Constrained Kalman Filtering Via Density Function Truncation for Turbofan Engine Health Estimation

    NASA Technical Reports Server (NTRS)

    Simon, Dan; Simon, Donald L.

    2006-01-01

    Kalman filters are often used to estimate the state variables of a dynamic system. However, in the application of Kalman filters some known signal information is often either ignored or dealt with heuristically. For instance, state variable constraints (which may be based on physical considerations) are often neglected because they do not fit easily into the structure of the Kalman filter. This paper develops an analytic method of incorporating state variable inequality constraints in the Kalman filter. The resultant filter truncates the PDF (probability density function) of the Kalman filter estimate at the known constraints and then computes the constrained filter estimate as the mean of the truncated PDF. The incorporation of state variable constraints increases the computational effort of the filter but significantly improves its estimation accuracy. The improvement is demonstrated via simulation results obtained from a turbofan engine model. The turbofan engine model contains 3 state variables, 11 measurements, and 10 component health parameters. It is also shown that the truncated Kalman filter may be a more accurate way of incorporating inequality constraints than other constrained filters (e.g., the projection approach to constrained filtering).

  6. Varying coefficient subdistribution regression for left-truncated semi-competing risks data

    PubMed Central

    Li, Ruosha

    2014-01-01

    Semi-competing risks data frequently arise in biomedical studies when time to a disease landmark event is subject to dependent censoring by death, the observation of which however is not precluded by the occurrence of the landmark event. In observational studies, the analysis of such data can be further complicated by left truncation. In this work, we study a varying co-efficient subdistribution regression model for left-truncated semi-competing risks data. Our method appropriately accounts for the specifical truncation and censoring features of the data, and moreover has the flexibility to accommodate potentially varying covariate effects. The proposed method can be easily implemented and the resulting estimators are shown to have nice asymptotic properties. We also present inference, such as Kolmogorov-Smirnov type and Cramér Von-Mises type hypothesis testing procedures for the covariate effects. Simulation studies and an application to the Denmark diabetes registry demonstrate good finite-sample performance and practical utility of the proposed method. PMID:25125711

  7. Truncated forms of DNA-binding estrogen receptors in human breast cancer.

    PubMed Central

    Scott, G K; Kushner, P; Vigne, J L; Benz, C C

    1991-01-01

    The likelihood a breast cancer will respond to antiestrogen therapy depends on the tumor content of immunoreactive or ligand-binding estrogen receptor (ER). To investigate the failure of many ER-positive breast cancers to respond to antiestrogen therapy, we examined by gel-shift assay the ability of tumor ER to bind its cognate estrogen response element (ERE). Analysis of 38 primary breast cancers showed that some tumors containing abundant immunoreactive ER failed to demonstrate DNA binding ER. In many other ER-positive tumors, the fraction of DNA binding ER was low and consisted primarily of truncated receptor forms, which on Western analysis were revealed to be 50 kD homodimers and 67-50 kD ER heterodimers. The use of protease inhibitors during tumor extraction and the demonstration of nuclear-localizing ER and ERE-binding COUP (chicken ovalbumin upstream promoter) protein in these tumors indicated that the truncated forms of ER were likely present in vivo. The presence of intact DNA binding ER correlated with higher tumor content of immunoreactive sex steroid receptors (ER and/or PR), standard predictors of tumor responsiveness to antiestrogen, suggesting that loss or truncation of DNA binding ER may be an important prognostic parameter accounting for some forms of clinical resistance to antiestrogen therapy. Images PMID:1864980

  8. A novel truncated form of HMGA2 in tumors of the ovaries

    PubMed Central

    Agostini, Antonio; Panagopoulos, Ioannis; Davidson, Ben; Trope, Claes Goran; Heim, Sverre; Micci, Francesca

    2016-01-01

    Neoplasms of the ovary are the second most common tumor of the female reproductive system, and the most lethal of the gynecological malignancies. Ovarian tumors are divided into a copious number of different groups reflecting their different features. The present study analyzed 187 ovarian tumors (39 sex-cord stromal tumors, 22 borderline tumors and 126 carcinomas) for the expression of the high-mobility group AT-hook 2 (HMGA2) gene, for mutations in the isocitrate dehydrogenase (NADP(+)) 1, cytosolic (IDH1), isocitrate dehydrogenase (NADP(+)) 2, mitochondrial (IDH2) and telomerase reverse transcriptase (TERT) genes, and for methylation of the O6-methylguanine-DNA methyltransferase (MGMT) promoter. Reverse transcription-polymerase chain reaction analysis showed that HMGA2 was expressed in 74.5% of the samples (120/161). A truncated transcript of HMGA2 was identified in 11 cases. A novel truncated form of HMGA2 was found in 4 serous high-grade carcinomas. Only 4 tumors (4/185) showed the TERT C228T mutation. No IDH1 or IDH2 mutations were found. Methylation of the promoter of MGMT was found in 2 borderline tumors (2/185). HMGA2 was expressed, in its truncated and native form, in different ovarian tumors, even the less aggressive types, underscoring the general importance of this gene in ovarian tumorigenesis. Mutations involving TERT, as well as MGMT promoter methylation, are rare events in ovarian tumors. PMID:27446471

  9. Nonlinear Dynamic Behavior of Functionally Graded Truncated Conical Shell Under Complex Loads

    NASA Astrophysics Data System (ADS)

    Yang, S. W.; Hao, Y. X.; Zhang, W.; Li, S. B.

    Nonlinear dynamic behaviors of ceramic-metal graded truncated conical shell subjected to complex loads are investigated. The shell is modeled by first-order shear deformation theory. The nonlinear partial differential governing equation in terms of transverse displacements of the FGM truncated conical shell is derived from the Hamilton's principle. Galerkin's method is then utilized to discretize the partial governing equations to a two-degree-of-freedom nonlinear ordinary differential equation. The temperature-dependent materials properties of the constituents are graded in the radial direction in accordance with a power-law distribution. The aerodynamic pressure can be calculated by using the first-order piston theory. The temperature field is assumed to be a steady-state constant-temperature distribution. Bifurcation diagrams, the maximum Lyapunov exponents, wave forms and phase portraits are obtained by numerical simulation to demonstrate the complex nonlinear dynamics response of the FGM truncated conical shell. The influences of the semi-vertex angle, the material gradient index, in-plane and aerodynamic load on the nonlinear dynamics are studied.

  10. Caspase-1 causes truncation and aggregation of the Parkinson's disease-associated protein α-synuclein.

    PubMed

    Wang, Wei; Nguyen, Linh T T; Burlak, Christopher; Chegini, Fariba; Guo, Feng; Chataway, Tim; Ju, Shulin; Fisher, Oriana S; Miller, David W; Datta, Debajyoti; Wu, Fang; Wu, Chun-Xiang; Landeru, Anuradha; Wells, James A; Cookson, Mark R; Boxer, Matthew B; Thomas, Craig J; Gai, Wei Ping; Ringe, Dagmar; Petsko, Gregory A; Hoang, Quyen Q

    2016-08-23

    The aggregation of α-synuclein (aSyn) leading to the formation of Lewy bodies is the defining pathological hallmark of Parkinson's disease (PD). Rare familial PD-associated mutations in aSyn render it aggregation-prone; however, PD patients carrying wild type (WT) aSyn also have aggregated aSyn in Lewy bodies. The mechanisms by which WT aSyn aggregates are unclear. Here, we report that inflammation can play a role in causing the aggregation of WT aSyn. We show that activation of the inflammasome with known stimuli results in the aggregation of aSyn in a neuronal cell model of PD. The insoluble aggregates are enriched with truncated aSyn as found in Lewy bodies of the PD brain. Inhibition of the inflammasome enzyme caspase-1 by chemical inhibition or genetic knockdown with shRNA abated aSyn truncation. In vitro characterization confirmed that caspase-1 directly cleaves aSyn, generating a highly aggregation-prone species. The truncation-induced aggregation of aSyn is toxic to neuronal culture, and inhibition of caspase-1 by shRNA or a specific chemical inhibitor improved the survival of a neuronal PD cell model. This study provides a molecular link for the role of inflammation in aSyn aggregation, and perhaps in the pathogenesis of sporadic PD as well. PMID:27482083

  11. Modest truncation of the major capsid protein abrogates B19 parvovirus capsid formation.

    PubMed Central

    Kawase, M; Momoeda, M; Young, N S; Kajigaya, S

    1995-01-01

    In vitro studies have suggested an important role for the minor capsid protein (VP1) unique region and the junction between VP1 and the major capsid protein (VP2) in the neutralizing immune response to B19 parvovirus. We investigated the role of the NH2-terminal region of the major structural protein in capsid structure by expressing progressively more truncated versions of the VP2 gene followed by analysis using immunoblotting and electron microscopy of density gradient-purified particles. Deletion of the first 25 amino acids (aa) of VP2 did not affect capsid assembly. Altered VP2 with truncations to aa 26 to 30, including a single amino acid deletion at position 25, failed to self-assemble but did participate with normal VP2 in the capsid structure. The altered region corresponds to the beginning of the beta A antiparallel strand. Truncations beyond aa 30 were incompatible with either self-assembly or coassembly, probably because of deletion of the beta B strand, which helps to form the core structure of the virus. PMID:7666560

  12. Adenovirus i-Leader Truncation Bioselected Against Cancer-associated Fibroblasts to Overcome Tumor Stromal Barriers

    PubMed Central

    Puig-Saus, Cristina; Gros, Alena; Alemany, Ramon; Cascalló, Manel

    2012-01-01

    Tumor-associated stromal cells constitute a major hurdle in the antitumor efficacy with oncolytic adenoviruses. To overcome this biological barrier, an in vitro bioselection of a mutagenized AdwtRGD stock in human cancer-associated fibroblasts (CAFs) was performed. Several rounds of harvest at early cytopathic effect (CPE) followed by plaque isolation led us to identify one mutant with large plaque phenotype, enhanced release in CAFs and enhanced cytotoxicity in CAF and several tumor cell lines. Whole genome sequencing and functional mapping identified the truncation of the last 17 amino acids in C-terminal end of the i-leader protein as the mutation responsible for this phenotype. Similar mutations have been previously isolated in two independent bioselection processes in tumor cell lines. Importantly, our results establish the enhanced antitumor activity in vivo of the i-leader C-terminal truncated mutants, especially in a desmotic fibroblast-embedded lung carcinoma model in mice. These results indicate that the i-leader truncation represents a promising trait to improve virotherapy with oncolytic adenoviruses. PMID:21863000

  13. The truncated and evolving inner accretion disc of the black hole GX 339-4

    NASA Astrophysics Data System (ADS)

    Plant, D. S.; Fender, R. P.; Ponti, G.; Muñoz-Darias, T.; Coriat, M.

    2015-01-01

    The nature of accretion onto stellar mass black holes in the low/hard state remains unresolved, with some evidence suggesting that the inner accretion disc is truncated and replaced by a hot flow. However, the detection of relativistic broadened Fe emission lines, even at relatively low luminosities, seems to require an accretion disc extending fully to its innermost stable circular orbit. Modelling such features is, however, highly susceptible to degeneracies, which could easily bias any interpretation. We present the first systematic study of the Fe line region to track how the inner accretion disc evolves in the low/hard state of the black hole GX 339-4. Our four observations display increased broadening of the Fe line over two magnitudes in luminosity, which we use to track any variation of the disc inner radius. We find that the disc extends closer to the black hole at higher luminosities, but is consistent with being truncated throughout the entire low/hard state, a result which renders black hole spin estimates inaccurate at these stages of the outburst. Furthermore, we show that the evolution of our spectral inner disc radius estimates corresponds very closely to the trend of the break frequency in Fourier power spectra, supporting the interpretation of a truncated and evolving disc in the hard state.

  14. Compensating for velocity truncation during subaperture polishing by controllable and time-variant tool influence functions.

    PubMed

    Dong, Zhichao; Cheng, Haobo; Tam, Hon-Yuen

    2015-02-10

    The velocity-varying regime used in deterministic subaperture polishing employs a time-invariant tool influence function (TIF) to figure localized surface errors by varying the transverse velocities of polishing tools. Desired transverse velocities have to be truncated if they exceed the maximal velocity of computer numerical control (CNC) machines, which induces excessive material removal and reduces figuring efficiency (FE). A time-variant (TV) TIF regime is presented, in which a TIF serves as a variable to compensate for excessive material removal when the transverse velocities are truncated. Compared with other methods, the TV-TIF regime exhibits better performance in terms of convergence rate, FE, and versatility; its operability can also be strengthened by a TIF library. Comparative experiments were conducted on a magnetorheological finishing machine to validate the effectiveness of the TV-TIF regime. Without a TV-TIF, the tool made an unwished dent (depth of 76 nm) at the center because of the velocity truncation problem. Through compensation with a TV-TIF, the dent was completely removed by the second figuring process, and a TV-TIF improved the FE from 0.029 to 0.066  mm(3)/h. PMID:25968037

  15. Digestion proteomics: tracking lactoferrin truncation and peptide release during simulated gastric digestion.

    PubMed

    Grosvenor, Anita J; Haigh, Brendan J; Dyer, Jolon M

    2014-11-01

    The extent to which nutritional and functional benefit is derived from proteins in food is related to its breakdown and digestion in the body after consumption. Further, detailed information about food protein truncation during digestion is critical to understanding and optimising the availability of bioactives, in controlling and limiting allergen release, and in minimising or monitoring the effects of processing and food preparation. However, tracking the complex array of products formed during the digestion of proteins is not easily accomplished using classical proteomics. We here present and develop a novel proteomic approach using isobaric labelling to mapping and tracking protein truncation and peptide release during simulated gastric digestion, using bovine lactoferrin as a model food protein. The relative abundance of related peptides was tracked throughout a digestion time course, and the effect of pasteurisation on peptide release assessed. The new approach to food digestion proteomics developed here therefore appears to be highly suitable not only for tracking the truncation and relative abundance of released peptides during gastric digestion, but also for determining the effects of protein modification on digestibility and potential bioavailability. PMID:24760222

  16. Characteristics of thermostable amylopullulanase of Geobacillus thermoleovorans and its truncated variants.

    PubMed

    Nisha, M; Satyanarayana, T

    2015-05-01

    The far-UV CD spectroscopic analysis of the secondary structure in the temperature range between 30 and 90°C revealed a compact and thermally stable structure of C-terminal truncated amylopullulanase of Geobacillus thermoleovorans NP33 (gt-apuΔC) with a higher melting temperature [58°C] than G. thermoleovorans NP33 amylopullulanase (gt-apu) [50°C] and the N-terminal truncated amylopullulanase from G. thermoleovorans NP33 (gt-apuΔN) [55°C]. A significant decline in random coils in gt-apuΔC and gt-apuΔN suggested an improvement in conformational stability, and thus, an enhancement in their thermal stability. The improvement in the thermostability of gt-apuΔC was corroborated by the thermodynamic parameters for enzyme inactivation. The Trp fluorescence emission (335 nm) and the acrylamide quenching constant (22.69 M(-1)) of gt-apuΔC indicated that the C-terminal truncation increases the conformational stability of the protein with the deeply buried tryptophan residues. The 8-Anilino Naphthalene Sulfonic acid (ANS) fluorescence experiments indicated the unfolding of gt-apu to expose its hydrophobic surface to a greater extent than the gt-apuΔC and gt-apuΔN. PMID:25748845

  17. Adaptive sampler

    DOEpatents

    Watson, Bobby L.; Aeby, Ian

    1982-01-01

    An adaptive data compression device for compressing data having variable frequency content, including a plurality of digital filters for analyzing the content of the data over a plurality of frequency regions, a memory, and a control logic circuit for generating a variable rate memory clock corresponding to the analyzed frequency content of the data in the frequency region and for clocking the data into the memory in response to the variable rate memory clock.

  18. Adaptive sampler

    DOEpatents

    Watson, B.L.; Aeby, I.

    1980-08-26

    An adaptive data compression device for compressing data is described. The device has a frequency content, including a plurality of digital filters for analyzing the content of the data over a plurality of frequency regions, a memory, and a control logic circuit for generating a variable rate memory clock corresponding to the analyzed frequency content of the data in the frequency region and for clocking the data into the memory in response to the variable rate memory clock.

  19. Adaptive antennas

    NASA Astrophysics Data System (ADS)

    Barton, P.

    1987-04-01

    The basic principles of adaptive antennas are outlined in terms of the Wiener-Hopf expression for maximizing signal to noise ratio in an arbitrary noise environment; the analogy with generalized matched filter theory provides a useful aid to understanding. For many applications, there is insufficient information to achieve the above solution and thus non-optimum constrained null steering algorithms are also described, together with a summary of methods for preventing wanted signals being nulled by the adaptive system. The three generic approaches to adaptive weight control are discussed; correlation steepest descent, weight perturbation and direct solutions based on sample matrix conversion. The tradeoffs between hardware complexity and performance in terms of null depth and convergence rate are outlined. The sidelobe cancellor technique is described. Performance variation with jammer power and angular distribution is summarized and the key performance limitations identified. The configuration and performance characteristics of both multiple beam and phase scan array antennas are covered, with a brief discussion of performance factors.

  20. Pharmacological characterization of recombinant NR1/NR2A NMDA receptors with truncated and deleted carboxy termini expressed in Xenopus laevis oocytes

    PubMed Central

    Puddifoot, CA; Chen, PE; Schoepfer, R; Wyllie, DJA

    2009-01-01

    Background and purpose: The carboxy terminal domain (CTD) of NR2 N-methyl-d-aspartate receptor (NMDAR) subunits interacts with numerous scaffolding and signal transduction proteins. Mutations of this region affect trafficking and downstream signalling of NMDARs. This study determines to what extent characteristic pharmacological properties of NR2A-containing NMDARs are influenced by this key functional domain. Experimental approach: Using recombinant receptor expression in Xenopus laevis oocytes and two electrode voltage clamp recordings we characterized pharmacological properties of rat NR1/NR2A NMDARs with altered CTDs. We assessed the effects of truncating [at residue Iso1098; NR2A(trunC)] and deleting [from residue Phe822; NR2A(delC)] the CTD of NR2A NMDAR subunits on agonist potencies, channel block by Mg2+ and memantine and potentiation of NMDAR-mediated responses by chelating contaminating divalent cations. Key results: Truncation or deletion of the CTD of NR2A NMDAR subunits did not affect glutamate potency [EC50 = 2.2 µmol·L−1, NR2A(trunC); 2.7 µmol·L−1, NR2A(delC) compared with 3.3 µmol·L−1, NR2A(WT)] but did significantly increase glycine potency [EC50 = 500 nmol·L−1, NR2A(trunC); 900 nmol·L−1, NR2A(delC) compared with 1.3 µmol·L−1, NR2A(WT)]. Voltage-dependent Mg2+ block of NR2A(WT)- and NR2A(trunC)-containing NMDARs was similar but low concentrations of Mg2+ (1 µmol·L−1) potentiated NR1/NR2A(delC) NMDARs. Memantine block was not affected by changes to the structure of the NR2A CTD. EDTA-induced potentiation was similar at each of the three NMDAR constructs. Conclusions and implications: Of the parameters studied only minor influences of the CTD were observed; these are unlikely to compromise interpretation of studies that make use of CTD-mutated recombinant receptors or transgenic mice in investigations of the role of the CTD in NMDAR signalling. PMID:19154422

  1. Criminal Justice Systems. Block I: Law Enforcement. Block II: The Courts. Block III: Corrections. Block IV: Community Relations. Block V: Proficiency Skills. Block VI: Criminalistics. Student Guide.

    ERIC Educational Resources Information Center

    Florida State Dept. of Education, Tallahassee. Div. of Vocational, Adult, and Community Education.

    This student guide together with an instructor guide comprise a set of curriculum materials on the criminal justice system. The student guide contains self-contained instructional material that students can study at their own pace most of the time. Six major subject areas or blocks, which are further broken down into several units, with some units…

  2. Criminal Justice Systems. Block I: Law Enforcement. Block II: The Courts. Block III: Corrections. Block IV: Community Relations. Block V: Proficiency Skills. Block VI: Criminalistics. Instructor Guide.

    ERIC Educational Resources Information Center

    Florida State Dept. of Education, Tallahassee. Div. of Vocational, Adult, and Community Education.

    This instructor guide together with a student guide comprise a set of curriculum materials on the criminal justice system. The instructor guide is a resource for planning and managing individualized, competency-based instruction in six major subject areas or blocks, which are further broken down into several units with some units having several…

  3. Structural and Functional Significance of the N- and C-Terminal Appendages in Arabidopsis Truncated Hemoglobin.

    PubMed

    Mukhi, Nitika; Dhindwal, Sonali; Uppal, Sheetal; Kapoor, Abhijeet; Arya, Richa; Kumar, Pravindra; Kaur, Jagreet; Kundu, Suman

    2016-03-29

    Plant hemoglobins constitute three distinct groups: symbiotic, nonsymbiotic, and truncated hemoglobins. Structural investigation of symbiotic and nonsymbiotic (class I) hemoglobins revealed the presence of a vertebrate-like 3/3 globin fold in these proteins. In contrast, plant truncated hemoglobins are similar to bacterial truncated hemoglobins with a putative 2/2 α-helical globin fold. While multiple structures have been reported for plant hemoglobins of the first two categories, for plant truncated globins only one structure has been reported of late. Here, we report yet another crystal structure of the truncated hemoglobin from Arabidopsis thaliana (AHb3) with two water molecules in the heme pocket, of which one is distinctly coordinated to the heme iron, unlike the only available crystal structure of AHb3 with a hydroxyl ligand. AHb3 was monomeric in its crystallographic asymmetric unit; however, dimer was evident in the crystallographic symmetry, and the globin indeed existed as a stable dimer in solution. The tertiary structure of the protein exhibited a bacterial-like 2/2 α-helical globin fold with an additional N-terminal α-helical extension and disordered C-termini. To address the role of these extended termini in AHb3, which is yet unknown, N- and C-terminal deletion mutants were created and characterized and molecular dynamics simulations performed. The C-terminal deletion had an insignificant effect on most properties but perturbed the dimeric equilibrium of AHb3 and significantly influenced azide binding kinetics in the ferric state. These results along with the disordered nature of the C-terminus indicated its putative role in intramolecular or intermolecular interactions probably regulating protein-ligand and protein-protein interactions. While the N-terminal deletion did not change the overall globin fold, stability, or ligand binding kinetics, it seemed to have influenced coordination at the heme iron, the hydration status of the active site

  4. 31 CFR 560.322 - Blocked account; blocked property.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... name of the Government of Iran, any Iranian financial institution, or any other person whose property and interests in property are blocked pursuant to § 560.211, or in which the Government of Iran,...

  5. 31 CFR 560.322 - Blocked account; blocked property.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... name of the Government of Iran, any Iranian financial institution, or any other person whose property and interests in property are blocked pursuant to § 560.211, or in which the Government of Iran,...

  6. Fluvial entrainment of low density peat blocks (block carbon)

    NASA Astrophysics Data System (ADS)

    Warburton, Jeff

    2014-05-01

    In many fluvial environments low density materials are transported in significant quantities and these form an important part of the stream load and /or have a distinct impact on sedimentation in these environments. However, there are significant gaps in understanding of how these materials are entrained and transported by streams and rivers. Eroding upland peatland environments in particular, frequently have fluvial systems in which large eroded peat blocks, often exceeding 1 m in length; form an important component of the stream material flux. Transport of this material is significant in determining rates of erosion but also has important impacts in terms of damage to infrastructure and carbon loss. This paper describes a field experiment designed to establish for the first time the conditions under which large peat blocks (c. > 0.1 m b axis) are initially entrained from a rough gravel bed. The field site is Trout Beck, in the North Pennines, Northern England which is an upland wandering river channel with occasional lateral and mid channel bars. Mean low flow stage is typically 0.2 m but during flood can rapidly rise, in one to two hours, to over 1.5 m. To study peat block entrainment a bespoke data acquisition system consisting of two pressure transducers, four release triggers and time lapse camera was set up. The pressure transducers provided a record of local depth and the release triggers were embedded in peat blocks to record initial motion and arranged on the rough stream bed. The time lapse camera provided verification of timing of block entrainment (during daylight hours) and also provided information on the mechanism of initial movement. Peat blocks were cut from a local source and were equidimensional, ranging in size from 0.1 to 0.7 m. The derived entrainment function is related to a critical depth of entrainment. Results demonstrate that peat blocks are entrained when the local depth approximates the height of the peat block. Blocks frequently shift

  7. Modified artificial bee colony optimization with block perturbation strategy

    NASA Astrophysics Data System (ADS)

    Jia, Dongli; Duan, Xintao; Khurram Khan, Muhammad

    2015-05-01

    As a newly emerged swarm intelligence-based optimizer, the artificial bee colony (ABC) algorithm has attracted the interest of researchers in recent years owing to its ease of use and efficiency. In this article, a modified ABC algorithm with block perturbation strategy (BABC) is proposed. Unlike basic ABC, in the BABC algorithm, not one element but a block of elements from the parent solutions is changed while producing a new solution. The performance of the BABC algorithm is investigated and compared with that of the basic ABC, modified ABC, Brest's differential evolution, self-adaptive differential evolution and restart covariance matrix adaptation evolution strategy (IPOP-CMA-ES) over a set of widely used benchmark functions. The obtained results show that the performance of BABC is better than, or at least comparable to, that of the basic ABC, improved differential evolution variants and IPOP-CMA-ES in terms of convergence speed and final solution accuracy.

  8. The Cellular Building Blocks of Breathing

    PubMed Central

    Ramirez, J.M.; Doi, A.; Garcia, A.J.; Elsen, F.P.; Koch, H.; Wei, A.D.

    2013-01-01

    Respiratory brainstem neurons fulfill critical roles in controlling breathing: they generate the activity patterns for breathing and contribute to various sensory responses including changes in O2 and CO2. These complex sensorimotor tasks depend on the dynamic interplay between numerous cellular building blocks that consist of voltage-, calcium-, and ATP-dependent ionic conductances, various ionotropic and metabotropic synaptic mechanisms, as well as neuromodulators acting on G-protein coupled receptors and second messenger systems. As described in this review, the sensorimotor responses of the respiratory network emerge through the state-dependent integration of all these building blocks. There is no known respiratory function that involves only a small number of intrinsic, synaptic, or modulatory properties. Because of the complex integration of numerous intrinsic, synaptic, and modulatory mechanisms, the respiratory network is capable of continuously adapting to changes in the external and internal environment, which makes breathing one of the most integrated behaviors. Not surprisingly, inspiration is critical not only in the control of ventilation, but also in the context of “inspiring behaviors” such as arousal of the mind and even creativity. Far-reaching implications apply also to the underlying network mechanisms, as lessons learned from the respiratory network apply to network functions in general. PMID:23720262

  9. The Building Blocks of Geology.

    ERIC Educational Resources Information Center

    Gibson, Betty O.

    2001-01-01

    Discusses teaching techniques for teaching about rocks, minerals, and the differences between them. Presents a model-building activity that uses plastic building blocks to build crystal and rock models. (YDS)

  10. Carbon-carbon cylinder block

    NASA Technical Reports Server (NTRS)

    Ransone, Philip O. (Inventor)

    1998-01-01

    A lightweight cylinder block composed of carbon-carbon is disclosed. The use of carbon-carbon over conventional materials, such as cast iron or aluminum, reduces the weight of the cylinder block and improves thermal efficiency of the internal combustion reciprocating engine. Due to the negligible coefficient of thermal expansion and unique strength at elevated temperatures of carbon-carbon, the piston-to-cylinder wall clearance can be small, especially when the carbon-carbon cylinder block is used in conjunction with a carbon-carbon piston. Use of the carbon-carbon cylinder block has the effect of reducing the weight of other reciprocating engine components allowing the piston to run at higher speeds and improving specific engine performance.

  11. Standard Missile Block IV battery

    SciTech Connect

    Martin, J.

    1996-11-01

    During the 1980`s a trend in automatic primary battery technologies was the replacement of silver-zinc batteries by thermal battery designs. The Standard missile (SM 2) Block IV development is a noteworthy reversal of this trend. The SM2, Block IV battery was originally attempted as a thermal battery with multiple companies attempting to develop a thermal battery design. These attempts resulted in failure to obtain a production thermal battery. A decision to pursue a silver-zinc battery design resulted in the development of a battery to supply the SM 2, Block IV (thermal battery design goal) and also the projected power requirements of the evolving SM 2, Block IVA in a single silver-zinc battery design. Several advancements in silver-zinc battery technology were utilized in this design that improve the producibility and extend the boundaries of silver-zinc batteries.

  12. Ear - blocked at high altitudes

    MedlinePlus

    ... ears; Flying and blocked ears; Eustachian tube dysfunction - high altitude ... the middle ear and the back of the nose and upper throat. ... down from high altitudes. Chewing gum the entire time you are ...

  13. Robustness of muscle synergies during visuomotor adaptation

    PubMed Central

    Gentner, Reinhard; Edmunds, Timothy; Pai, Dinesh K.; d'Avella, Andrea

    2013-01-01

    During visuomotor adaptation a novel mapping between visual targets and motor commands is gradually acquired. How muscle activation patterns are affected by this process is an open question. We tested whether the structure of muscle synergies is preserved during adaptation to a visuomotor rotation. Eight subjects applied targeted isometric forces on a handle instrumented with a force transducer while electromyographic (EMG) activity was recorded from 13 shoulder and elbow muscles. The recorded forces were mapped into horizontal displacements of a virtual sphere with simulated mass, elasticity, and damping. The task consisted of moving the sphere to a target at one of eight equally spaced directions. Subjects performed three baseline blocks of 32 trials, followed by six blocks with a 45° CW rotation applied to the planar force, and finally three wash-out blocks without the perturbation. The sphere position at 100 ms after movement onset revealed significant directional error at the beginning of the rotation, a gradual learning in subsequent blocks, and aftereffects at the beginning of the wash-out. The change in initial force direction was closely related to the change in directional tuning of the initial EMG activity of most muscles. Throughout the experiment muscle synergies extracted using a non-negative matrix factorization algorithm from the muscle patterns recorded during the baseline blocks could reconstruct the muscle patterns of all other blocks with an accuracy significantly higher than chance indicating structural robustness. In addition, the synergies extracted from individual blocks remained similar to the baseline synergies throughout the experiment. Thus synergy structure is robust during visuomotor adaptation suggesting that changes in muscle patterns are obtained by rotating the directional tuning of the synergy recruitment. PMID:24027524

  14. Skin delivery by block copolymer nanoparticles (block copolymer micelles).

    PubMed

    Laredj-Bourezg, Faiza; Bolzinger, Marie-Alexandrine; Pelletier, Jocelyne; Valour, Jean-Pierre; Rovère, Marie-Rose; Smatti, Batoule; Chevalier, Yves

    2015-12-30

    Block copolymer nanoparticles often referred to as "block copolymer micelles" have been assessed as carriers for skin delivery of hydrophobic drugs. Such carriers are based on organic biocompatible and biodegradable materials loaded with hydrophobic drugs: poly(lactide)-block-poly(ethylene glycol) copolymer (PLA-b-PEG) nanoparticles that have a solid hydrophobic core made of glassy poly(d,l-lactide), and poly(caprolactone)-block-poly(ethylene glycol) copolymer (PCL-b-PEG) nanoparticles having a liquid core of polycaprolactone. In vitro skin absorption of all-trans retinol showed a large accumulation of retinol in stratum corneum from both block copolymer nanoparticles, higher by a factor 20 than Polysorbate 80 surfactant micelles and by a factor 80 than oil solution. Additionally, skin absorption from PLA-b-PEG nanoparticles was higher by one order of magnitude than PCL-b-PEG, although their sizes (65nm) and external surface (water-swollen PEG layer) were identical as revealed by detailed structural characterizations. Fluorescence microscopy of histological skin sections provided a non-destructive picture of the storage of Nile Red inside stratum corneum, epidermis and dermis. Though particle cores had a different physical states (solid or liquid as measured by (1)H NMR), the ability of nanoparticles for solubilization of the drug assessed from their Hildebrand solubility parameters appeared the parameter of best relevance regarding skin absorption. PMID:26602293

  15. Mediation of buprenorphine analgesia by a combination of traditional and truncated mu opioid receptor splice variants.

    PubMed

    Grinnell, Steven G; Ansonoff, Michael; Marrone, Gina F; Lu, Zhigang; Narayan, Ankita; Xu, Jin; Rossi, Grace; Majumdar, Susruta; Pan, Ying-Xian; Bassoni, Daniel L; Pintar, John; Pasternak, Gavril W

    2016-10-01

    Buprenorphine has long been classified as a mu analgesic, although its high affinity for other opioid receptor classes and the orphanin FQ/nociceptin ORL1 receptor may contribute to its other actions. The current studies confirmed a mu mechanism for buprenorphine analgesia, implicating several subsets of mu receptor splice variants. Buprenorphine analgesia depended on the expression of both exon 1-associated traditional full length 7 transmembrane (7TM) and exon 11-associated truncated 6 transmembrane (6TM) MOR-1 variants. In genetic models, disruption of delta, kappa1 or ORL1 receptors had no impact on buprenorphine analgesia, while loss of the traditional 7TM MOR-1 variants in an exon 1 knockout (KO) mouse markedly lowered buprenorphine analgesia. Loss of the truncated 6TM variants in an exon 11 KO mouse totally eliminated buprenorphine analgesia. In distinction to analgesia, the inhibition of gastrointestinal transit and stimulation of locomotor activity were independent of truncated 6TM variants. Restoring expression of a 6TM variant with a lentivirus rescued buprenorphine analgesia in an exon 11 KO mouse that still expressed the 7TM variants. Despite a potent and robust stimulation of (35) S-GTPγS binding in MOR-1 expressing CHO cells, buprenorphine failed to recruit β-arrestin-2 binding at doses as high as 10 µM. Buprenorphine was an antagonist in DOR-1 expressing cells and an inverse agonist in KOR-1 cells. Buprenorphine analgesia is complex and requires multiple mu receptor splice variant classes but other actions may involve alternative receptors. PMID:27223691

  16. Recessive TTN truncating mutations define novel forms of core myopathy with heart disease

    PubMed Central

    Chauveau, Claire; Bonnemann, Carsten G.; Julien, Cedric; Kho, Ay Lin; Marks, Harold; Talim, Beril; Maury, Philippe; Arne-Bes, Marie Christine; Uro-Coste, Emmanuelle; Alexandrovich, Alexander; Vihola, Anna; Schafer, Sebastian; Kaufmann, Beth; Medne, Livija; Hübner, Norbert; Foley, A. Reghan; Santi, Mariarita; Udd, Bjarne; Topaloglu, Haluk; Moore, Steven A.; Gotthardt, Michael; Samuels, Mark E.; Gautel, Mathias; Ferreiro, Ana

    2014-01-01

    Core myopathies (CM), the main non-dystrophic myopathies in childhood, remain genetically unexplained in many cases. Heart disease is not considered part of the typical CM spectrum. No congenital heart defect has been reported, and childhood-onset cardiomyopathy has been documented in only two CM families with homozygous mutations of the TTN gene. TTN encodes titin, a giant protein of striated muscles. Recently, heterozygous TTN truncating mutations have also been reported as a major cause of dominant dilated cardiomyopathy. However, relatively few TTN mutations and phenotypes are known, and titin pathophysiological role in cardiac and skeletal muscle conditions is incompletely understood. We analyzed a series of 23 families with congenital CM and primary heart disease using TTN M-line-targeted sequencing followed in selected patients by whole-exome sequencing and functional studies. We identified seven novel homozygous or compound heterozygous TTN mutations (five in the M-line, five truncating) in 17% patients. Heterozygous parents were healthy. Phenotype analysis identified four novel titinopathies, including cardiac septal defects, left ventricular non-compaction, Emery–Dreifuss muscular dystrophy or arthrogryposis. Additionally, in vitro studies documented the first-reported absence of a functional titin kinase domain in humans, leading to a severe antenatal phenotype. We establish that CM are associated with a large range of heart conditions of which TTN mutations are a major cause, thereby expanding the TTN mutational and phenotypic spectrum. Additionally, our results suggest titin kinase implication in cardiac morphogenesis and demonstrate that heterozygous TTN truncating mutations may not manifest unless associated with a second mutation, reassessing the paradigm of their dominant expression. PMID:24105469

  17. Recessive TTN truncating mutations define novel forms of core myopathy with heart disease.

    PubMed

    Chauveau, Claire; Bonnemann, Carsten G; Julien, Cedric; Kho, Ay Lin; Marks, Harold; Talim, Beril; Maury, Philippe; Arne-Bes, Marie Christine; Uro-Coste, Emmanuelle; Alexandrovich, Alexander; Vihola, Anna; Schafer, Sebastian; Kaufmann, Beth; Medne, Livija; Hübner, Norbert; Foley, A Reghan; Santi, Mariarita; Udd, Bjarne; Topaloglu, Haluk; Moore, Steven A; Gotthardt, Michael; Samuels, Mark E; Gautel, Mathias; Ferreiro, Ana

    2014-02-15

    Core myopathies (CM), the main non-dystrophic myopathies in childhood, remain genetically unexplained in many cases. Heart disease is not considered part of the typical CM spectrum. No congenital heart defect has been reported, and childhood-onset cardiomyopathy has been documented in only two CM families with homozygous mutations of the TTN gene. TTN encodes titin, a giant protein of striated muscles. Recently, heterozygous TTN truncating mutations have also been reported as a major cause of dominant dilated cardiomyopathy. However, relatively few TTN mutations and phenotypes are known, and titin pathophysiological role in cardiac and skeletal muscle conditions is incompletely understood. We analyzed a series of 23 families with congenital CM and primary heart disease using TTN M-line-targeted sequencing followed in selected patients by whole-exome sequencing and functional studies. We identified seven novel homozygous or compound heterozygous TTN mutations (five in the M-line, five truncating) in 17% patients. Heterozygous parents were healthy. Phenotype analysis identified four novel titinopathies, including cardiac septal defects, left ventricular non-compaction, Emery-Dreifuss muscular dystrophy or arthrogryposis. Additionally, in vitro studies documented the first-reported absence of a functional titin kinase domain in humans, leading to a severe antenatal phenotype. We establish that CM are associated with a large range of heart conditions of which TTN mutations are a major cause, thereby expanding the TTN mutational and phenotypic spectrum. Additionally, our results suggest titin kinase implication in cardiac morphogenesis and demonstrate that heterozygous TTN truncating mutations may not manifest unless associated with a second mutation, reassessing the paradigm of their dominant expression. PMID:24105469

  18. A Novel Truncated Form of Serum Amyloid A in Kawasaki Disease

    PubMed Central

    Yu, Tom To-Sang; Ling, Xuefeng Bruce; Kanegaye, John T.; Burns, Jane C.; Cohen, Harvey J.

    2016-01-01

    Background Kawasaki disease (KD) is an acute vasculitis in children that can cause coronary artery abnormalities. Its diagnosis is challenging, and many cytokines, chemokines, acute phase reactants, and growth factors have failed evaluation as specific biomarkers to distinguish KD from other febrile illnesses. We performed protein profiling, comparing plasma from children with KD with febrile control (FC) subjects to determine if there were specific proteins or peptides that could distinguish the two clinical states. Materials and Methods Plasma from three independent cohorts from the blood of 68 KD and 61 FC subjects was fractionated by anion exchange chromatography, followed by surface-enhanced laser desorption ionization (SELDI) mass spectrometry of the fractions. The mass spectra of KD and FC plasma samples were analyzed for peaks that were statistically significantly different. Results A mass spectrometry peak with a mass of 7,860 Da had high intensity in acute KD subjects compared to subacute KD (p = 0.0003) and FC (p = 7.9 x 10−10) subjects. We identified this peak as a novel truncated form of serum amyloid A with N-terminal at Lys-34 of the circulating form and validated its identity using a hybrid mass spectrum immunoassay technique. The truncated form of serum amyloid A was present in plasma of KD subjects when blood was collected in tubes containing protease inhibitors. This peak disappeared when the patients were examined after their symptoms resolved. Intensities of this peptide did not correlate with KD-associated laboratory values or with other mass spectrum peaks from the plasma of these KD subjects. Conclusions Using SELDI mass spectrometry, we have discovered a novel truncated form of serum amyloid A that is elevated in the plasma of KD when compared with FC subjects. Future studies will evaluate its relevance as a diagnostic biomarker and its potential role in the pathophysiology of KD. PMID:27271757

  19. Construction and Stable Expression of a Truncated Human Receptor Tyrosine Kinase Ror1 (Ror1-ECD).

    PubMed

    Forouzesh, Flora; Tabarian, Samira Shakeri; Emami, Shaghayegh; Tehrani, Mahmood-Jeddi; Hadavi, Reza; Rabbani, Hodjattallah

    2012-01-01

    Expression of receptor tyrosine kinase Ror1 in a wide variety of cancers has emerged as a new era focusing on targeting this receptor in cancer therapy. Our preliminary results indicate the presence of a truncated transcript of Ror1 in tumor cells. The truncated Ror1 encompasses extracellular and transmembrane domains, lacking catalytic kinase domain (Ror1-ECD). As enzyme activity is highly dependent on the catalytic domain, we were wondering how this transcript and its encoded protein could play a possible role in tumorigenesis. To understand the function of this truncated transcript and whether or not the encoded protein translocates to the cell surface, we constructed a mammalian expression vector containing exon 1 to exon 8 of human Ror1 gene as a model system. The encoded protein by this construct covers the entire extracellular and transmembrane domains of Ror1. The Chinese Hamster Ovary Cell line (CHO) was used for transfection. Our results showed that this construct could express Ror1-ECD at protein level and also the protein could effectively translocate to the surface of transfected cells. Such model may suggest that a proportion of Ror1 molecules expressed by tumor cells are not full-length Ror1. This notion may be considered when applying flow cytometry using antibodies against Ror1 for screening of tumor cells in order to avoid any miscalculation in the number of Ror1 molecules expressed by tumor cells. Furthermore, such expression may bring about assumptions on functional roles of Ror1-ECD in tumorigenesis, which requires extensive functional studies. PMID:23408137

  20. Construction and Stable Expression of a Truncated Human Receptor Tyrosine Kinase Ror1 (Ror1-ECD)

    PubMed Central

    Forouzesh, Flora; Tabarian, Samira Shakeri; Emami, Shaghayegh; Tehrani, Mahmood-Jeddi; Hadavi, Reza; Rabbani, Hodjattallah

    2012-01-01

    Expression of receptor tyrosine kinase Ror1 in a wide variety of cancers has emerged as a new era focusing on targeting this receptor in cancer therapy. Our preliminary results indicate the presence of a truncated transcript of Ror1 in tumor cells. The truncated Ror1 encompasses extracellular and transmembrane domains, lacking catalytic kinase domain (Ror1-ECD). As enzyme activity is highly dependent on the catalytic domain, we were wondering how this transcript and its encoded protein could play a possible role in tumorigenesis. To understand the function of this truncated transcript and whether or not the encoded protein translocates to the cell surface, we constructed a mammalian expression vector containing exon 1 to exon 8 of human Ror1 gene as a model system. The encoded protein by this construct covers the entire extracellular and transmembrane domains of Ror1. The Chinese Hamster Ovary Cell line (CHO) was used for transfection. Our results showed that this construct could express Ror1-ECD at protein level and also the protein could effectively translocate to the surface of transfected cells. Such model may suggest that a proportion of Ror1 molecules expressed by tumor cells are not full-length Ror1. This notion may be considered when applying flow cytometry using antibodies against Ror1 for screening of tumor cells in order to avoid any miscalculation in the number of Ror1 molecules expressed by tumor cells. Furthermore, such expression may bring about assumptions on functional roles of Ror1-ECD in tumorigenesis, which requires extensive functional studies. PMID:23408137

  1. [Effect of N-terminal truncation of Bacillus acidopullulyticus pullulanase on enzyme properties and functions].

    PubMed

    Chen, A'na; Liu, Xiuxia; Dai, Xiaofeng; Zhan, Jinling; Peng, Feng; Li, Lu; Wang, Fen; Li, Song; Yang, Yankun; Bai, Zhonghu

    2016-03-01

    We constructed different N-terminal truncated variants based on Bacillus acidopullulyticus pullulanase 3D structure (PDB code 2WAN), and studied the effects of truncated mutation on soluble expression, enzymatic properties, and application in saccharification. Upon expression, the variants of X45 domain deletion existed as inclusion bodies, whereas deletion of CBM41 domain had an effective effect on soluble expression level. The variants that lack of CBM41 (M1), lack of X25 (M3), and lack both of CBM41 and X25 (M5) had the same optimal pH (5.0) and optimal temperature (60 degrees C) with the wild-type pullulanase (WT). The K(m) of M1 and M5 were 1.42 mg/mL and 1.85 mg/mL, respectively, 2.4- and 3.1-fold higher than that of the WT. k(cat)/K(m) value of M5 was 40% lower than that of the WT. Substrate specificity results show that the enzymes exhibited greater activity with the low-molecular-weight dextrin than with high-molecular-weight soluble starch. When pullulanases were added to the saccharification reaction system, the dextrose equivalent of the WT, M1, M3, and M5 were 93.6%, 94.7%, 94.5%, and93.1%, respectively. These results indicate that the deletion of CBM41 domain and/or X25 domain did not affect the practical application in starch saccharification process. Furthermore, low-molecular-weight variants facilitate the heterologous expression. Truncated variants may be more suitable for industrial production than the WT. PMID:27349118

  2. Simulation of Cold Flow in a Truncated Ideal Nozzle with Film Cooling

    NASA Technical Reports Server (NTRS)

    Braman, Kalen; Ruf, Joseph

    2015-01-01

    Flow transients during rocket start-up and shut-down can lead to significant side loads on rocket nozzles. The capability to estimate these side loads computationally can streamline the nozzle design process. Towards this goal, the flow in a truncated ideal contour (TIC) nozzle has been simulated for a range of nozzle pressure ratios (NPRs) aimed to match a series of cold flow experiments performed at the NASA MSFC Nozzle Test Facility. These simulations were performed with varying turbulence model choices and with four different versions of the TIC nozzle model geometry, each of which was created with a different simplification to the test article geometry.

  3. Enhanced Fibril Fragmentation of N-Terminally Truncated and Pyroglutamyl-Modified Aβ Peptides.

    PubMed

    Wulff, Melanie; Baumann, Monika; Thümmler, Anka; Yadav, Jay K; Heinrich, Liesa; Knüpfer, Uwe; Schlenzig, Dagmar; Schierhorn, Angelika; Rahfeld, Jens-Ulrich; Horn, Uwe; Balbach, Jochen; Demuth, Hans-Ulrich; Fändrich, Marcus

    2016-04-11

    N-terminal truncation and pyroglutamyl (pE) formation are naturally occurring chemical modifications of the Aβ peptide in Alzheimer's disease. We show herein that these two modifications significantly reduce the fibril length and the transition midpoint of thermal unfolding of the fibrils, but they do not substantially perturb the fibrillary peptide conformation. This observation implies that the N terminus of the unmodified peptide protects Aβ fibrils against mechanical stress and fragmentation and explains the high propensity of pE-modified peptides to form small and particularly toxic aggregates. PMID:26970534

  4. Comparative evaluation of predicted and measured performance of a 68-cubic meter truncated reverberant noise chamber

    NASA Technical Reports Server (NTRS)

    Cyphers, H. D.; Munson, A. N.; On, F. J.

    1975-01-01

    The performance of a medium size, truncated reverberation chamber is evaluated in detail. Chamber performance parameters are predicted, using classical acoustic theory, and are compared to results from actual chamber measurements. Discrepancies are discussed in relation to several available empirical corrections developed by other researchers. Of more practical interest is the confirmation of a recent theory stating that the present guide for the ratio of specimen volume to test chamber volume, approximately 10 percent, is overly conservative, and can be increased by a factor of at least 2 and possibly 3. Results and theoretical justification of these findings are presented.

  5. Estimating the tensile strength of super hard brittle materials using truncated spheroidal specimens

    NASA Astrophysics Data System (ADS)

    Serati, Mehdi; Alehossein, Habib; Williams, David J.

    2015-05-01

    New approaches need to be introduced to measure the tensile capacity of super hard materials since the standard methods are not effective. To pursue this objective, a series of laboratory tests were constructed to replicate the fracture mechanism of diamond-based materials. Experiments indicate that under a certain compressive test condition, stresses normal to the axisymmetric line in truncated spheroidal specimens (bullet-shaped specimens) are in tension contributing to the tensile fracture of the material. From experimental and numerical studies, it is concluded that semi-prolate spheroidal specimens can be used to determine precisely the tensile strength of brittle stiff diamond-like composites.

  6. Paired box mutations in familial and sporadic aniridia predicts truncated aniridia proteins.

    PubMed Central

    Martha, A.; Ferrell, R. E.; Mintz-Hittner, H.; Lyons, L. A.; Saunders, G. F.

    1994-01-01

    Aniridia, an autosomal dominant ocular disorder characterized by iris hypoplasia, results from mutations in the PAX6 gene, which encodes paired box and homeobox motifs. In this report we describe five new mutations in the paired box region of the human PAX6 gene that are associated with aniridia. The paired box mutations that we detected were in both familial (three) and sporadic (two) cases. All five mutations predict truncated PAX6 proteins. Our study indicates that early premature translational termination mutations in the PAX6 gene result in haploinsufficiency and generate the aniridia phenotype. Images Figure 2 Figure 3 Figure 4 Figure 5 PMID:7909985

  7. The nutriceutical bovine colostrum truncates the increase in gut permeability caused by heavy exercise in athletes.

    PubMed

    Marchbank, Tania; Davison, Glen; Oakes, Jemma R; Ghatei, Mohammad A; Patterson, Michael; Moyer, Mary Pat; Playford, Raymond J

    2011-03-01

    Heavy exercise causes gut symptoms and, in extreme cases, "heat stroke" partially due to increased intestinal permeability of luminal toxins. We examined bovine colostrum, a natural source of growth factors, as a potential moderator of such effects. Twelve volunteers completed a double-blind, placebo-controlled, crossover protocol (14 days colostrum/placebo) prior to standardized exercise. Gut permeability utilized 5 h urinary lactulose-to-rhamnose ratios. In vitro studies (T84, HT29, NCM460 human colon cell lines) examined colostrum effects on temperature-induced apoptosis (active caspase-3 and 9, Baxα, Bcl-2), heat shock protein 70 (HSP70) expression and epithelial electrical resistance. In both study arms, exercise increased blood lactate, heart rate, core temperature (mean 1.4°C rise) by similar amounts. Gut hormone profiles were similar in both arms although GLP-1 levels rose following exercise in the placebo but not the colostrum arm (P = 0.026). Intestinal permeability in the placebo arm increased 2.5-fold following exercise (0.38 ± 0.012 baseline, to 0.92 ± 0.014, P < 0.01), whereas colostrum truncated rise by 80% (0.38 ± 0.012 baseline to 0.49 ± 0.017) following exercise. In vitro apoptosis increased by 47-65% in response to increasing temperature by 2°C. This effect was truncated by 60% if colostrum was present (all P < 0.01). Similar results were obtained examining epithelial resistance (colostrum truncated temperature-induced fall in resistance by 64%, P < 0.01). Colostrum increased HSP70 expression at both 37 and 39°C (P < 0.001) and was truncated by addition of an EGF receptor-neutralizing antibody. Temperature-induced increase in Baxα and reduction in Bcl-2 was partially reversed by presence of colostrum. Colostrum may have value in enhancing athletic performance and preventing heat stroke. PMID:21148400

  8. Vacuum laser-driven acceleration by two slits-truncated Bessel beams

    SciTech Connect

    Li, D.; Imasaki, K.

    2005-08-29

    An approach of vacuum acceleration by two laser Bessel beams is presented in this letter. With elaborate arrangement, the two Bessel beams are truncated by a set of special annular slits to form consecutive acceleration field in the electron traveling direction. Therefore, the electron of a certain initial energy can be accelerated in the whole interaction region without experiencing deceleration even though the phase-slippage occurs. Furthermore, the Bessel beam can provide a rather long distance for the effective interaction between the electron and the laser field due to its 'diffraction-free' property, resulting in improvement of the energy exchange.

  9. Truncated spherical-wave basis set for first-principles pseudopotential calculations

    NASA Astrophysics Data System (ADS)

    Monserrat, B.; Haynes, P. D.

    2010-11-01

    Analytic results for two- and three-centre integrals are derived for the truncated spherical-wave basis set designed for first-principles pseudopotential calculations within density-functional theory. These allow the overlap, kinetic energy and non-local pseudopotential matrix elements to be calculated efficiently and accurately. In particular, the scaling of the computational effort with maximum angular momentum component is dramatically improved and the projection method takes full account of the discontinuities in the basis functions arising from their localization within spherical regions.

  10. A simple test of independence for truncated data with applications to redshift surveys

    NASA Technical Reports Server (NTRS)

    Efron, Bradley; Petrosian, Vahe

    1992-01-01

    This paper presents an easily applied permutation test for H0, closely related to Lyden-Bell's (1971) estimate of the marginal distribution of truncated data. The test is applied to two redshift-magnitude surveys, one of galaxies and one of quasars. Assuming statistical independence, testing H0 amounts to testing validity of the cosmological model. Segal's (1986) chronomatic cosmological model is rejected under H0. On the other hand, for the quasar sample H0 is rejected strongly in a conventional cosmological model (and in a chronomatic model as well) indicating either incorrectness of the models or, as is more commonly assumed, indicating strong luminosity evolution.

  11. A Program for Partitioning Shifted Truncated Lognormal Distributions into Size-Class Bins

    USGS Publications Warehouse

    Attanasi, E.D.; Charpentier, Ronald R.

    2007-01-01

    In recent years, oil and gas accumulation-size frequency distributions have become a standard way to characterize undiscovered conventional oil and gas resources that have been postulated by geologic assessments. The preparation of such distributions requires the assessment geologists to explicitly choose parameters for the probability distribution for the sizes of undiscovered accumulations. The purpose of this report is to present a computational scheme for obtaining a binned size frequency distribution of undiscovered accumulations when the undiscovered accumulation size distribution is shifted truncated lognormal.

  12. Analytical Investigation of Elastic Thin-Walled Cylinder and Truncated Cone Shell Intersection Under Internal Pressure.

    PubMed

    Zamani, J; Soltani, B; Aghaei, M

    2014-10-01

    An elastic solution of cylinder-truncated cone shell intersection under internal pressure is presented. The edge solution theory that has been used in this study takes bending moments and shearing forces into account in the thin-walled shell of revolution element. The general solution of the cone equations is based on power series method. The effect of cone apex angle on the stress distribution in conical and cylindrical parts of structure is investigated. In addition, the effect of the intersection and boundary locations on the circumferential and longitudinal stresses is evaluated and it is shown that how quantitatively they are essential. PMID:25053860

  13. Universal and special keys based on phase-truncated Fourier transform

    NASA Astrophysics Data System (ADS)

    Qin, Wan; Peng, Xiang; Meng, Xiangfeng; Gao, Bruce

    2011-08-01

    We propose a novel optical asymmetric cryptosystem based on a phase-truncated Fourier transform. Two decryption keys independent of each other are generated. They are referred to as universal key and special key, respectively. Each of them can be used for decryption independently in absence of the other. The universal key is applicable to decrypt any ciphertext encoded by the same encryption key, but with poor legibility. On the contrary, the special key is adequate for legible decryption, but only valid for one ciphertext corresponding to the specified plaintext. A set of simulation results show the interesting performance of two types of decryption keys.

  14. Non-perturbative Calculation of the Scalar Yukawa Theory in Four-Body Truncation

    NASA Astrophysics Data System (ADS)

    Li, Yang; Karmanov, V. A.; Maris, P.; Vary, J. P.

    2015-09-01

    The quenched scalar Yukawa theory is solved in the light-front Tamm-Dancoff approach including up to four constituents (one scalar nucleon, three scalar pions). The Fock sector dependent renormalization is implemented. By studying the Fock sector norms, we find that the lowest two Fock sectors dominate the state even in the large-coupling region. The one-body sector shows convergence with respect to the Fock sector truncation. However, the four-body norm exceeds the three-body norm at the coupling.

  15. Adaptive control of Hammerstein-Wiener nonlinear systems

    NASA Astrophysics Data System (ADS)

    Zhang, Bi; Hong, Hyokchan; Mao, Zhizhong

    2016-07-01

    The Hammerstein-Wiener model is a block-oriented model, having a linear dynamic block sandwiched by two static nonlinear blocks. This note develops an adaptive controller for a special form of Hammerstein-Wiener nonlinear systems which are parameterized by the key-term separation principle. The adaptive control law and recursive parameter estimation are updated by the use of internal variable estimations. By modeling the errors due to the estimation of internal variables, we establish convergence and stability properties. Theoretical results show that parameter estimation convergence and closed-loop system stability can be guaranteed under sufficient condition. From a qualitative analysis of the sufficient condition, we introduce an adaptive weighted factor to improve the performance of the adaptive controller. Numerical examples are given to confirm the results in this paper.

  16. A standardized block fabrication technique

    SciTech Connect

    Famiglietti, R.; Noriega, B.; Sanders, R. )

    1990-01-01

    The accuracy of delivered dose is a primary goal in every radiation therapy department. Improved imaging techniques now enable the radiation therapist to define more precisely the area of interest, which helps the sparing of normal surrounding tissue. Tray-mounted customized blocks are routinely used to define this treatment portal accurately and reproducibly. However, the level of accuracy is dependent on the block fabrication technique and the skill of the block cutter. We at Moffitt Cancer Center have standardized our system in a way that minimizes some of the human errors, while keeping the procedure fast and accurate. This system uses a tray template that simulates our blocking trays. The function of this tray is to position the styrofoam (and therefore the cerrobend block) on the tray in such a way as to insure proper alignment with the treatment machine. We also feel this improves upon some common designs using random holes or hole patterns, which may interfere with the treatment area. This system is not overly sophisticated and can be easily implemented in most radiation therapy departments.

  17. Block Matching for Object Tracking

    SciTech Connect

    Gyaourova, A; Kamath, C; Cheung, S

    2003-10-13

    Models which describe road traffic patterns can be helpful in detection and/or prevention of uncommon and dangerous situations. Such models can be built by the use of motion detection algorithms applied to video data. Block matching is a standard technique for encoding motion in video compression algorithms. We explored the capabilities of the block matching algorithm when applied for object tracking. The goal of our experiments is two-fold: (1) to explore the abilities of the block matching algorithm on low resolution and low frame rate video and (2) to improve the motion detection performance by the use of different search techniques during the process of block matching. Our experiments showed that the block matching algorithm yields good object tracking results and can be used with high success on low resolution and low frame rate video data. We observed that different searching methods have small effect on the final results. In addition, we proposed a technique based on frame history, which successfully overcame false motion caused by small camera movements.

  18. NH2-terminal truncations of cardiac troponin I and cardiac troponin T produce distinct effects on contractility and calcium homeostasis in adult cardiomyocytes

    PubMed Central

    Wei, Hongguang

    2014-01-01

    Cardiac troponin I (TnI) has an NH2-terminal extension that is an adult heart-specific regulatory structure. Restrictive proteolytic truncation of the NH2-terminal extension of cardiac TnI occurs in normal hearts and is upregulated in cardiac adaptation to hemodynamic stress or β-adrenergic deficiency. NH2-terminal truncated cardiac TnI (cTnI-ND) alters the conformation of the core structure of cardiac TnI similarly to that produced by PKA phosphorylation of Ser23/24 in the NH2-terminal extension. At organ level, cTnI-ND enhances ventricular diastolic function. The NH2-terminal region of cardiac troponin T (TnT) is another regulatory structure that can be selectively cleaved via restrictive proteolysis. Structural variations in the NH2-terminal region of TnT also alter the molecular conformation and function. Transgenic mouse hearts expressing NH2-terminal truncated cardiac TnT (cTnT-ND) showed slower contractile velocity to prolong ventricular rapid-ejection time, resulting in higher stroke volume. Our present study compared the effects of cTnI-ND and cTnT-ND in cardiomyocytes isolated from transgenic mice on cellular morphology, contractility, and calcium kinetics. Resting cTnI-ND, but not cTnT-ND, cardiomyocytes had shorter length than wild-type cells with no change in sarcomere length. cTnI-ND, but not cTnT-ND, cardiomyocytes produced higher contractile amplitude and faster shortening and relengthening velocities in the absence of external load than wild-type controls. Although the baseline and peak levels of cytosolic Ca2+ were not changed, Ca2+ resequestration was faster in both cTnI-ND and cTnT-ND cardiomyocytes than in wild-type control. The distinct effects of cTnI-ND and cTnT-ND demonstrate their roles in selectively modulating diastolic or systolic functions of the heart. PMID:25518962

  19. A new reconstruction of the Paleozoic continental margin of southwestern North America: Implications for the nature and timing of continental truncation and the possible role of the Mojave-Sonora megashear

    USGS Publications Warehouse

    Stevens, C.H.; Stone, P.; Miller, J.S.

    2005-01-01

    Data bearing on interpretations of the Paleozoic and Mesozoic paleogeography of southwestern North America are important for testing the hypothesis that the Paleozoic miogeocline in this region has been tectonically truncated, and if so, for ascertaining the time of the event and the possible role of the Mojave-Sonora megashear. Here, we present an analysis of existing and new data permitting reconstruction of the Paleozoic continental margin of southwestern North America. Significant new and recent information incorporated into this reconstruction includes (1) spatial distribution of Middle to Upper Devonian continental-margin facies belts, (2) positions of other paleogeographically significant sedimentary boundaries on the Paleozoic continental shelf, (3) distribution of Upper Permian through Upper Triassic plutonic rocks, and (4) evidence that the southern Sierra Nevada and western Mojave Desert are underlain by continental crust. After restoring the geology of western Nevada and California along known and inferred strike-slip faults, we find that the Devonian facies belts and pre-Pennsylvanian sedimentary boundaries define an arcuate, generally south-trending continental margin that appears to be truncated on the southwest. A Pennsylvanian basin, a Permian coral belt, and a belt of Upper Permian to Upper Triassic plutons stretching from Sonora, Mexico, into westernmost central Nevada, cut across the older facies belts, suggesting that truncation of the continental margin occurred in the Pennsylvanian. We postulate that the main truncating structure was a left-lateral transform fault zone that extended from the Mojave-Sonora megashear in northwestern Mexico to the Foothills Suture in California. The Caborca block of northwestern Mexico, where Devonian facies belts and pre-Pennsylvanian sedimentary boundaries like those in California have been identified, is interpreted to represent a missing fragment of the continental margin that underwent ???400 km of left

  20. Exact canonic eigenstates of the truncated Bogoliubov Hamiltonian in an interacting bosons gas

    NASA Astrophysics Data System (ADS)

    Ferrari, Loris

    2016-09-01

    In a gas of N weakly interacting bosons [1,2], a truncated canonic Hamiltonian Hc follows from dropping all the interaction terms between free bosons with momentum ℏk ≠ 0 . Bogoliubov Canonic Approximation (BCA) is a further manipulation, replacing the number operatorN˜in of free particles in k = 0 , with the total number N of bosons. BCA Hc transforms into a different Hamiltonian HBCA =∑k≠0 ɛ(k) Bk† Bk + const , where Bk† and Bk create/annihilate non interacting pseudoparticles. The problem of the exact eigenstates of the truncated Hamiltonian is completely solved in the thermodynamic limit (TL) for a special class of eigensolutions | S , k>c , denoted as 's-pseudobosons', with energies ES(k) and zero total momentum. Some preliminary results are given for the exact eigenstates (denoted as 'η-pseudobosons'), carrying a total momentum ηℏk (η = 1 , 2 , …) . A comparison is done with HBCA and with the Gross-Pitaevskii theory (GPT), showing that some differences between exact and BCA/GPT results persist even in the thermodynamic limit (TL). Finally, it is argued that the emission of η-pseudobosons, which is responsible for the dissipation á la Landau [3], could be significantly different from the usual picture, based on BCA pseudobosons.

  1. X-Ray structure of a truncated form of cytochrome f from chlamydomonas Reinhardtii

    SciTech Connect

    Chi, Young-In; Huang, Li-Shar; Zhang, Zhaolei; Fernando-Velasquez, Javier G.; Berry, E. A.

    2000-03-01

    A truncated form of cytochrome f from Chlamydomonas Reinhardtii (an important eukaryotic model organism for photosynthetic electron transfer studies) has been crystallized (space group P212121; 3 molecules/ asymmetric unit) and its structure determined to 2.0 Angstrom by molecular replacement using the coordinates of a truncated turnip cytochrome f as a model. The structure displays the same folding and detailed features as turnip cytochrome f including: (a) an unusual heme Fe ligation by alpha-amino group of tyrosine 1, (b) a cluster of lysine residues (proposed docking site of plastocyanin), and (c) the presence of a chain of 7 water molecules bound to conserved residues and extending between the heme pocket and K58 and K66 at the lysine cluster. For this array of waters we propose a structural role. Two cytochrome f molecules are related by a non-crystallographic symmetry operator which is a distorted proper 2-fold rotation. This may represent the dimeric relation of the monomers in situ, however the heme orientation suggested by this model is not consistent with previous epr measurements on oriented membranes.

  2. De Novo Truncating FUS Gene Mutation as a Cause of Sporadic Amyotrophic Lateral Sclerosis

    PubMed Central

    DeJesus-Hernandez, Mariely; Kocerha, Jannet; Finch, NiCole; Crook, Richard; Baker, Matt; Desaro, Pamela; Johnston, Amelia; Rutherford, Nicola; Wojtas, Aleksandra; Kennelly, Kathleen; Wszolek, Zbigniew K.; Graff-Radford, Neill; Boylan, Kevin; Rademakers, Rosa

    2010-01-01

    Mutations in the gene encoding fused in sarcoma (FUS) were recently identified as a novel cause of amyotrophic lateral sclerosis (ALS), emphasizing the genetic heterogeneity of ALS. We sequenced the genes encoding superoxide dismutase (SOD1), TAR DNA-binding protein 43 (TARDBP) and FUS in 99 sporadic and 17 familial ALS patients ascertained at Mayo Clinic. We identified two novel mutations in FUS in two out of 99 (2.0%) sporadic ALS patients and established the de novo occurrence of one FUS mutation. In familial patients, we identified three (17.6%) SOD1 mutations, while FUS and TARDBP mutations were excluded. The de novo FUS mutation (g.10747A>G; IVS13-2A>G) affects the splice-acceptor site of FUS intron 13 and was shown to induce skipping of FUS exon 14 leading to the C-terminal truncation of FUS (p.G466VfsX14). Subcellular localization studies showed a dramatic increase in the cytoplasmic localization of FUS and a reduction of normal nuclear expression in cells transfected with truncated compared to wild-type FUS. We further identified a novel in-frame insertion/deletion mutation in FUS exon 12 (p.S402 P411delinsGGGG) which is predicted to expand a conserved poly-glycine motif. Our findings extend the mutation spectrum in FUS leading to ALS and describe the first de novo mutation in FUS. PMID:20232451

  3. Pressure Overload by Transverse Aortic Constriction Induces Maladaptive Hypertrophy in a Titin-Truncated Mouse Model.

    PubMed

    Zhou, Qifeng; Kesteven, Scott; Wu, Jianxin; Aidery, Parwez; Gawaz, Meinrad; Gramlich, Michael; Feneley, Michael P; Harvey, Richard P

    2015-01-01

    Mutations in the giant sarcomeric protein titin (TTN) are a major cause for inherited forms of dilated cardiomyopathy (DCM). We have previously developed a mouse model that imitates a TTN truncation mutation we found in a large pedigree with DCM. While heterozygous Ttn knock-in mice do not display signs of heart failure under sedentary conditions, they recapitulate the human phenotype when exposed to the pharmacological stressor angiotensin II or isoproterenol. In this study we investigated the effects of pressure overload by transverse aortic constriction (TAC) in heterozygous (Het) Ttn knock-in mice. Two weeks after TAC, Het mice developed marked impairment of left ventricular ejection fraction (p < 0.05), while wild-type (WT) TAC mice did not. Het mice also trended toward increased ventricular end diastolic pressure and volume compared to WT littermates. We found an increase in histologically diffuse cardiac fibrosis in Het compared to WT in TAC mice. This study shows that a pattern of DCM can be induced by TAC-mediated pressure overload in a TTN-truncated mouse model. This model enlarges our arsenal of cardiac disease models, adding a valuable tool to understand cardiac pathophysiological remodeling processes and to develop therapeutic approaches to combat heart failure. PMID:26504781

  4. Pressure Overload by Transverse Aortic Constriction Induces Maladaptive Hypertrophy in a Titin-Truncated Mouse Model

    PubMed Central

    Zhou, Qifeng; Kesteven, Scott; Wu, Jianxin; Aidery, Parwez; Gawaz, Meinrad; Gramlich, Michael; Feneley, Michael P.; Harvey, Richard P.

    2015-01-01

    Mutations in the giant sarcomeric protein titin (TTN) are a major cause for inherited forms of dilated cardiomyopathy (DCM). We have previously developed a mouse model that imitates a TTN truncation mutation we found in a large pedigree with DCM. While heterozygous Ttn knock-in mice do not display signs of heart failure under sedentary conditions, they recapitulate the human phenotype when exposed to the pharmacological stressor angiotensin II or isoproterenol. In this study we investigated the effects of pressure overload by transverse aortic constriction (TAC) in heterozygous (Het) Ttn knock-in mice. Two weeks after TAC, Het mice developed marked impairment of left ventricular ejection fraction (p < 0.05), while wild-type (WT) TAC mice did not. Het mice also trended toward increased ventricular end diastolic pressure and volume compared to WT littermates. We found an increase in histologically diffuse cardiac fibrosis in Het compared to WT in TAC mice. This study shows that a pattern of DCM can be induced by TAC-mediated pressure overload in a TTN-truncated mouse model. This model enlarges our arsenal of cardiac disease models, adding a valuable tool to understand cardiac pathophysiological remodeling processes and to develop therapeutic approaches to combat heart failure. PMID:26504781

  5. A truncated Wnt7a retains full biological activity in skeletal muscle

    NASA Astrophysics Data System (ADS)

    von Maltzahn, Julia; Zinoviev, Radoslav; Chang, Natasha C.; Bentzinger, C. Florian; Rudnicki, Michael A.

    2013-11-01

    Wnt signaling has essential roles during embryonic development and tissue homoeostasis. Wnt proteins are post-translationally modified and the attachment of a palmitate moiety at two conserved residues is believed to be a prerequisite for the secretion and function of Wnt proteins. Here we demonstrate that a mammalian Wnt protein can be fully functional without palmitoylation. We generate a truncated Wnt7a variant, consisting of the C-terminal 137 amino acids lacking the conserved palmitoylation sites and show that it retains full biological activity in skeletal muscle. This includes binding to and signaling through its receptor Fzd7 to stimulate symmetric expansion of satellite stem cells by activating the planar-cell polarity pathway and inducing myofibre hypertrophy by signaling through the AKT/mTOR pathway. Furthermore, this truncated Wnt7a shows enhanced secretion and dispersion compared with the full-length protein. Together, these findings open important new avenues for the development of Wnt7a as a treatment for muscle-wasting diseases and have broad implications for the therapeutic use of Wnts as biologics.

  6. Closure theories with non-Gaussian restarts for truncated two-dimensional turbulence

    NASA Astrophysics Data System (ADS)

    Frederiksen, J. S.; Davies, A. G.; Bell, R. C.

    1994-09-01

    NonMarkovian closure theories, with and without non-Gaussian restarts, are compared with ensemble averaged direct numerical simulations (DNS) for severely truncated two-dimensional Navier-Stokes flows. Both the closures and DNS are formulated for discrete spectra relevant to flows on the doubly periodic domain allowing unambiguous comparisons between the closure and DNS results. We examine the performance of the direct interaction approximation (DIA), self-consistent field theory (SCFT) and local energy-transfer theory (LET) closures and are particularly interested in the reliability of cumulant update versions of these closures (CUDIA, CUSCFT, and CULET). In the latter, the potentially long time-history integrals are periodically truncated and the closures are restarted using a three-point cumulant as the new non-Gaussian initial conditions, thus yielding computationally much more efficient closures. In 80-day integrations, the DIA replicates the DNS results most faithfully in inviscid, viscous decay and forced dissipative experiments. With an update time of T=10 days, the CUDIA is particularly promising performing nearly as well but with some extra oscillations at intermediate times. The SCFT and particularly LET, have spurious oscillations in inviscid and viscous decay experiments; this is also the case, but to a greater degree, for the CUSCFT and CULET closures.

  7. Expression, purification and characterization of recombinant toxins consisting of truncated gastrin 17 and pseudomonas exotoxin.

    PubMed

    Feng, Xiao-Li; Liu, Xi-Lin; Lu, Shi-Ying; Ren, Hong-Lin; Li, Yan-Song; Hu, Pan; Wang, Quan; Tong, Weihua; Yan, Dong-Ming; Zhou, Yu; Zhang, Song; Jin, Wen; Liu, Zeng-Shan

    2015-01-01

    Gastric cancer is a major cause of mortality and morbidity around world. However the effectiveness of the current approaches to the diagnosis and treatment of gastric cancer is limited. Recombinant targeted toxins may represent a novel direction of cancer therapy. In this study, we aimed to explore whether recombinant toxins fused with the truncated forms of G17 could target to kill cancer cells by recognizing CCK2R. Four recombinant Pseudomonas toxins PE38 fused with the forward or reverse truncated forms of G17 (G14 and G13) were successfully constructed, expressed, and purified. Their characteristics were further analyzed by SDS-PAGE, western blot and indirect immunofluorescence assay. The cytotoxicity assay demonstrated that only reversely fused recombinant toxins rG14PE38 and rG13PE38 exhibited certain toxicity on several cancer cell lines, and a competition assay indicated that the binding of the reverse gastrin-endotoxin to CCK2R (+) cells may be mediated by interaction between gastrin/gastrin-like and CCK2R. PMID:25353354

  8. V-pit to truncated pyramid transition in AlGaN-based heterostructures

    NASA Astrophysics Data System (ADS)

    Mogilatenko, A.; Enslin, J.; Knauer, A.; Mehnke, F.; Bellmann, K.; Wernicke, T.; Weyers, M.; Kneissl, M.

    2015-11-01

    The formation of three-dimensional truncated pyramids after the deposition of AlN/GaN superlattices onto (0001) AlN/sapphire templates has been analysed by atomic force microscopy as well as transmission electron microscopy. V-pits in AlN layers and the formation of nano-mounds around the v-pit edges are suggested to be responsible for the pyramid formation. Keeping the individual AlN layer thickness at 2.5 nm in the 80xAlN/GaN superlattice, the transformation to the three-dimensional pyramids is observed when the individual GaN layer thickness exceeds 1.5 nm. A subsequent overgrowth of the pyramidal structures by AlGaN results in inhomogeneous Ga distribution in the layers and laterally inhomogeneous strain states. Nevertheless, compared to the growth on planar layers, the overgrowth of the truncated pyramids leads to a slight reduction in dislocation density from 1 · 1010 cm-2 (for GaN thickness of 1 nm in SL) to 7 · 109 cm-2 (for GaN thickness of 2 nm in SL). The non-planar growth front and thus the compositional inhomogeneity in AlGaN vanish gradually with increasing AlGaN thickness. As a result, homogeneous 4 μm thick Al0.5Ga0.5N buffer layers suitable for the fabrication of UV-B LED structures can be obtained.

  9. Using data redundancy gained by patch overlaps to reduce truncation artifacts in magnetic particle imaging

    NASA Astrophysics Data System (ADS)

    Ahlborg, M.; Kaethner, C.; Knopp, T.; Szwargulski, P.; Buzug, T. M.

    2016-06-01

    The imaging technology magnetic particle imaging allows the detection of magnetic material, in particular superparamagnetic nanoparticles, by remagnetization of the material via magnetic fields. The application is aimed at medical imaging where the particles are applied as tracer directly into the blood stream. Medical safety considerations such as peripheral nerve stimulation limit the maximal amplitude of the magnetic fields and in turn the field of view size. To handle this constraint the concept of patches was introduced, which allows a shift of a field of view to different positions in order to enlarge the imaging area. If this is done statically an overlap of patches can be used to reduce truncation artifacts occurring at the adjacent edges. In this contribution, a differentiation of two different kinds of patch overlaps, i.e. a trajectory and a system matrix overlap, is made. Further, different concepts to combine the resulting redundant information are investigated with respect to the reduction of truncation artifacts. The methods are analyzed in detail in a simulation study and validated on experimental data.

  10. Computationally Efficient Truncated Nuclear Norm Minimization for High Dynamic Range Imaging.

    PubMed

    Lee, Chul; Lam, Edmund Y

    2016-09-01

    Matrix completion is a rank minimization problem to recover a low-rank data matrix from a small subset of its entries. Since the matrix rank is nonconvex and discrete, many existing approaches approximate the matrix rank as the nuclear norm. However, the truncated nuclear norm is known to be a better approximation to the matrix rank than the nuclear norm, exploiting a priori target rank information about the problem in rank minimization. In this paper, we propose a computationally efficient truncated nuclear norm minimization algorithm for matrix completion, which we call TNNM-ALM. We reformulate the original optimization problem by introducing slack variables and considering noise in the observation. The central contribution of this paper is to solve it efficiently via the augmented Lagrange multiplier (ALM) method, where the optimization variables are updated by closed-form solutions. We apply the proposed TNNM-ALM algorithm to ghost-free high dynamic range imaging by exploiting the low-rank structure of irradiance maps from low dynamic range images. Experimental results on both synthetic and real visual data show that the proposed algorithm achieves significantly lower reconstruction errors and superior robustness against noise than the conventional approaches, while providing substantial improvement in speed, thereby applicable to a wide range of imaging applications. PMID:27352392

  11. Assembly of {alpha}-synuclein fibrils in nanoscale studied by peptide truncation and AFM

    SciTech Connect

    Zhang Feng; Lin Xiaojing; Ji Lina; Du Haining; Tang Lin; He Jianhua; Hu Jun; Hu Hongyu

    2008-04-04

    {alpha}-Synuclein ({alpha}-Syn) fibrils are the major component of Lewy bodies that are closely associated with the pathogenesis of Parkinson's disease, but the mechanism for the fibril assembly remains poorly understood. Here we report using a combination of peptide truncation and atomic force microscopy (AFM) to elucidate the self-assembly and morphology of the {alpha}-Syn fibrils. The results show that protease K significantly slims the fibrils from the mean height of {approx}6.6 to {approx}4.7 nm, whereas chaotropic denaturant urea completely breaks down the fibrils into small particles. The in situ enzymatic digestion also results in thinning of the fibrils, giving rise to some nicks on the fibrils. Moreover, N- or C-terminally truncated {alpha}-Syn fragments assemble into thinner filaments with the heights depending on the peptide lengths. A nine-residue peptide corresponding to the homologous GAV-motif sequence can form very thin ({approx}2.2 nm) but long (>1 {mu}m) filaments. Thus, the central sequence of {alpha}-Syn forms a fibrillar core by cross-{beta}-structure that is flanked by two flexible termini, and the orientation of the fibril growth is perpendicular to the {beta}-sheet structures.

  12. A comparative study of an ABC and an artificial absorber for truncating finite element meshes

    NASA Technical Reports Server (NTRS)

    Oezdemir, T.; Volakis, John L.

    1993-01-01

    The type of mesh termination used in the context of finite element formulations plays a major role on the efficiency and accuracy of the field solution. The performance of an absorbing boundary condition (ABC) and an artificial absorber (a new concept) for terminating the finite element mesh was evaluated. This analysis is done in connection with the problem of scattering by a finite slot array in a thick ground plane. The two approximate mesh truncation schemes are compared with the exact finite element-boundary integral (FEM-BI) method in terms of accuracy and efficiency. It is demonstrated that both approximate truncation schemes yield reasonably accurate results even when the mesh is extended only 0.3 wavelengths away from the array aperture. However, the artificial absorber termination method leads to a substantially more efficient solution. Moreover, it is shown that the FEM-BI method remains quite competitive with the FEM-artificial absorber method when the FFT is used for computing the matrix-vector products in the iterative solution algorithm. These conclusions are indeed surprising and of major importance in electromagnetic simulations based on the finite element method.

  13. Human Truncated Tau Induces Mature Neurofibrillary Pathology in a Mouse Model of Human Tauopathy.

    PubMed

    Zimova, Ivana; Brezovakova, Veronika; Hromadka, Tomas; Weisova, Petronela; Cubinkova, Veronika; Valachova, Bernadeta; Filipcik, Peter; Jadhav, Santosh; Smolek, Tomas; Novak, Michal; Zilka, Norbert

    2016-09-01

    Alzheimer's disease (AD) represents the most common neurodegenerative disorder. Several animal models have been developed in order to test pathophysiological mechanisms of the disease and to predict effects of pharmacological interventions. Here we examine the molecular and behavioral features of R3m/4 transgenic mice expressing human non-mutated truncated tau protein (3R tau, aa151-391) that were previously used for efficacy testing of passive tau vaccine. The mouse model reliably recapitulated crucial histopathological features of human AD, such as pre-tangles, neurofibrillary tangles, and neuropil threads. The pathology was predominantly located in the brain stem. Transgenic mice developed mature sarkosyl insoluble tau complexes consisting of mouse endogenous and human truncated and hyperphosphorylated forms of tau protein. The histopathological and biochemical features were accompanied by significant sensorimotor impairment and reduced lifespan. The sensorimotor impairment was monitored by a highly sensitive, fully-automated tool that allowed us to assess early deficit in gait and locomotion. We suggest that the novel transgenic mouse model can serve as a valuable tool for analysis of the therapeutic efficacy of tau vaccines for AD therapy. PMID:27567836

  14. Construction of novel chimeric proteins through the truncation of SEC2 and Sak from Staphylococcus aureus.

    PubMed

    Hui, Jing; Yu, Xiao-jie; Cui, Xiao-jin; Mu, Teng; Lin, Jia-shuai; Ni, Pei; Li, Hui; You, Song; Hu, Feng-qing

    2014-01-01

    It is an usual clinical phenomenon that cancer patients are prone to thrombosis. Until now, there have been no efficient methods or appropriate drugs to prevent and cure tumor thrombus. Therefore, the construction of a bifunctional chimeric protein for the treatment of cancer, complicated with thrombosis, is of great significance. Utilizing the superantigenic activity of staphylococcal enterotoxin C2 (SEC2) and the thrombolytic activity of staphylokinase (Sak), Sak-linker-SEC2 and SEC2-linker-Sak were constructed which had good anti-tumor and thrombolytic activities at the same time. Due to the intrinsic emetic activity of SEC2 and high molecular weight (MW) of chimeric proteins (44 kDa), their clinical applications will be restricted. In this study, novel chimeric proteins including ΔSEC2-ΔSak and ΔSak-ΔSEC2 were constructed through the truncation of SEC2 and Sak without 9-Ala linker and His-tag. Compared with the former, both the truncated proteins preserved nearly the same anti-tumor and thrombolytic activities. In addition, their MWs were only 29 kDa and their immunoreactivities were slightly lower than that of Sak-linker-SEC2 and SEC2-linker-Sak, respectively. Therefore, the novel chimeric proteins possessed merits and characteristics, such as low MS, low immunogenicity, and difunctionality which the former had not. It will be of great interest if the above-mentioned proteins can be used to cure Trousseau syndrome in clinic. PMID:25209498

  15. A novel homozygous truncating GNAT1 mutation implicated in retinal degeneration

    PubMed Central

    Carrigan, Matthew; Humphries, Pete; Palfi, Arpad; Kenna, Paul F; Farrar, G Jane

    2016-01-01

    Background The GNAT1 gene encodes the α subunit of the rod transducin protein, a key element in the rod phototransduction cascade. Variants in GNAT1 have been implicated in stationary night-blindness in the past, but unlike other proteins in the same pathway, it has not previously been implicated in retinitis pigmentosa. Methods A panel of 182 retinopathy-associated genes was sequenced to locate disease-causing mutations in patients with inherited retinopathies. Results Sequencing revealed a novel homozygous truncating mutation in the GNAT1 gene in a patient with significant pigmentary disturbance and constriction of visual fields, a presentation consistent with retinitis pigmentosa. This is the first report of a patient homozygous for a complete loss-of-function GNAT1 mutation. The clinical data from this patient provide definitive evidence of retinitis pigmentosa with late onset in addition to the lifelong night-blindness that would be expected from a lack of transducin function. Conclusion These data suggest that some truncating GNAT1 variants can indeed cause a recessive, mild, late-onset retinal degeneration in human beings rather than just stationary night-blindness as reported previously, with notable similarities to the phenotype of the Gnat1 knockout mouse. PMID:26472407

  16. On finite truncation of infinite shot noise series representation of tempered stable laws

    NASA Astrophysics Data System (ADS)

    Imai, Junichi; Kawai, Reiichiro

    2011-11-01

    Tempered stable processes are widely used in various fields of application as alternatives with finite second moment and long-range Gaussian behaviors to stable processes. Infinite shot noise series representation is the only exact simulation method for the tempered stable process and has recently attracted attention for simulation use with ever improved computational speed. In this paper, we derive series representations for the tempered stable laws of increasing practical interest through the thinning, rejection, and inverse Lévy measure methods. We make a rigorous comparison among those representations, including the existing one due to Imai and Kawai [29] and Rosiński (2007) [3], in terms of the tail mass of Lévy measures which can be simulated under a common finite truncation scheme. The tail mass are derived in closed form for some representations thanks to various structural properties of the tempered stable laws. We prove that the representation via the inverse Lévy measure method achieves a much faster convergence in truncation to the infinite sum than all the other representations. Numerical results are presented to support our theoretical analysis.

  17. Complementation and Reconstitution of Fluorescence from Circularly Permuted and Truncated Green Fluorescent Protein†

    PubMed Central

    Huang, Yao-ming; Bystroff, Christopher

    2015-01-01

    Green fluorescent protein (GFP) has been used as a proof of concept for a novel “leave-one-out” biosensor design in which a protein that has a segment omitted from the middle of the sequence by circular permutation and truncation binds the missing peptide and reconstitutes its function. Three variants of GFP have been synthesized that are each missing one of the 11 β-strands from its β-barrel structure, and in two of the variants, adding the omitted peptide sequence in trans reconstitutes fluorescence. Detailed biochemical analysis indicates that GFP with β-strand 7 “left out” (t7SPm) exists in a partially unfolded state. The apo form t7SPm binds the free β-strand 7 peptide with a dissociation constant of ~0.5 µM and folds into the native state of GFP, resulting in fluorescence recovery. Folding of t7SPm, both with and without the peptide ligand, is at least a three-state process and has a rate comparable to that of the full-length and unpermuted GFP. The conserved kinetic properties strongly suggest that the rate-limiting steps in the folding pathway have not been altered by circular permutation and truncation in t7SPm. This study shows that structural and functional reconstitution of GFP can occur with a segment omitted from the middle of the chain, and that the unbound form is in a partially unfolded state. PMID:19140681

  18. Approaching the complete-basis limit with a truncated many-body expansion.

    PubMed

    Richard, Ryan M; Lao, Ka Un; Herbert, John M

    2013-12-14

    High-accuracy electronic structure calculations with correlated wave functions demand the use of large basis sets and complete-basis extrapolation, but the accuracy of fragment-based quantum chemistry methods has most often been evaluated using double-ζ basis sets, with errors evaluated relative to a supersystem calculation using the same basis set. Here, we examine the convergence towards the basis-set limit of two- and three-body expansions of the energy, for water clusters and ion-water clusters, focusing on calculations at the level of second-order Møller-Plesset perturbation theory (MP2). Several different corrections for basis-set superposition error (BSSE), each consistent with a truncated many-body expansion, are examined as well. We present a careful analysis of how the interplay of errors (from all sources) influences the accuracy of the results. We conclude that fragment-based methods often benefit from error cancellation wherein BSSE offsets both incompleteness of the basis set as well as higher-order many-body effects that are neglected in a truncated many-body expansion. An n-body counterpoise correction facilitates smooth extrapolation to the MP2 basis-set limit, and at n = 3 affords accurate results while requiring calculations in subsystems no larger than trimers. PMID:24329051

  19. Approaching the complete-basis limit with a truncated many-body expansion

    SciTech Connect

    Richard, Ryan M.; Lao, Ka Un; Herbert, John M.

    2013-12-14

    High-accuracy electronic structure calculations with correlated wave functions demand the use of large basis sets and complete-basis extrapolation, but the accuracy of fragment-based quantum chemistry methods has most often been evaluated using double-ζ basis sets, with errors evaluated relative to a supersystem calculation using the same basis set. Here, we examine the convergence towards the basis-set limit of two- and three-body expansions of the energy, for water clusters and ion–water clusters, focusing on calculations at the level of second-order Møller-Plesset perturbation theory (MP2). Several different corrections for basis-set superposition error (BSSE), each consistent with a truncated many-body expansion, are examined as well. We present a careful analysis of how the interplay of errors (from all sources) influences the accuracy of the results. We conclude that fragment-based methods often benefit from error cancellation wherein BSSE offsets both incompleteness of the basis set as well as higher-order many-body effects that are neglected in a truncated many-body expansion. An n-body counterpoise correction facilitates smooth extrapolation to the MP2 basis-set limit, and at n = 3 affords accurate results while requiring calculations in subsystems no larger than trimers.

  20. Wind tunnel evaluation of a truncated NACA 64-621 airfoil for wind turbine applications

    SciTech Connect

    Law, S.P.; Gregorek, G.M.

    1987-07-01

    An experimental program to measure the aerodynamic performance of a NACA 64-621 airfoil with a truncated trailing edge for wind turbine applications has been conducted in the Ohio State University Aeronautical and Astronautical Research Laboratory 6 in. x 22 in. pressurized wind tunnel. The blunted or trailing edge truncated (TET) airfoil has an advantage over similar sharp trailing edge airfoils because it is able to streamline a larger spar structure, while also providing aerodynamic properties that are quite good. Surface pressures were measured and integrated to determine the lift, pressure drag, and moment coefficients over angles of attack ranging from -14 to +90 at Mach 0.2 and Reynolds numbers of 1,000,000 and 600,000. Results are compared to the NACA 0025, 0030, and 0035 thick airfoils with sharp trailing edges. Comparison shows that the 30% thick NACA 64-621-TET airfoil has higher maximum lift, higher lift curve slope, lower drag at higher lift coefficients, and higher chordwise force coefficient than similar thick airfoils with sharp trailing edges.