Sample records for adaptive pseudo-spectral methods

  1. Fractional spectral and pseudo-spectral methods in unbounded domains: Theory and applications

    NASA Astrophysics Data System (ADS)

    Khosravian-Arab, Hassan; Dehghan, Mehdi; Eslahchi, M. R.

    2017-06-01

    This paper is intended to provide exponentially accurate Galerkin, Petrov-Galerkin and pseudo-spectral methods for fractional differential equations on a semi-infinite interval. We start our discussion by introducing two new non-classical Lagrange basis functions: NLBFs-1 and NLBFs-2 which are based on the two new families of the associated Laguerre polynomials: GALFs-1 and GALFs-2 obtained recently by the authors in [28]. With respect to the NLBFs-1 and NLBFs-2, two new non-classical interpolants based on the associated- Laguerre-Gauss and Laguerre-Gauss-Radau points are introduced and then fractional (pseudo-spectral) differentiation (and integration) matrices are derived. Convergence and stability of the new interpolants are proved in detail. Several numerical examples are considered to demonstrate the validity and applicability of the basis functions to approximate fractional derivatives (and integrals) of some functions. Moreover, the pseudo-spectral, Galerkin and Petrov-Galerkin methods are successfully applied to solve some physical ordinary differential equations of either fractional orders or integer ones. Some useful comments from the numerical point of view on Galerkin and Petrov-Galerkin methods are listed at the end.

  2. Pseudo-spectral methods applied to gravitational collapse.

    NASA Astrophysics Data System (ADS)

    Bonazzola, S.; Marck, J.-A.

    The authors present codes for solving Newtonian gravitational collapse in spherical coordinates for the spherical, axial and true 3 D cases. The pseudo-spectral techniques are used. All quantities are expanded in Chebychev or Legendre polynomials or Fourier series for the periodic parts. The codes are able to handle in a rigorous way the pseudo-singularities τ = 0 and θ = 0, π. Illustrative results for each of the three cases are given.

  3. Accurate modeling of plasma acceleration with arbitrary order pseudo-spectral particle-in-cell methods

    DOE PAGES

    Jalas, S.; Dornmair, I.; Lehe, R.; ...

    2017-03-20

    Particle in Cell (PIC) simulations are a widely used tool for the investigation of both laser- and beam-driven plasma acceleration. It is a known issue that the beam quality can be artificially degraded by numerical Cherenkov radiation (NCR) resulting primarily from an incorrectly modeled dispersion relation. Pseudo-spectral solvers featuring infinite order stencils can strongly reduce NCR - or even suppress it - and are therefore well suited to correctly model the beam properties. For efficient parallelization of the PIC algorithm, however, localized solvers are inevitable. Arbitrary order pseudo-spectral methods provide this needed locality. Yet, these methods can again be pronemore » to NCR. Here in this paper, we show that acceptably low solver orders are sufficient to correctly model the physics of interest, while allowing for parallel computation by domain decomposition.« less

  4. Adaptive mesh strategies for the spectral element method

    NASA Technical Reports Server (NTRS)

    Mavriplis, Catherine

    1992-01-01

    An adaptive spectral method was developed for the efficient solution of time dependent partial differential equations. Adaptive mesh strategies that include resolution refinement and coarsening by three different methods are illustrated on solutions to the 1-D viscous Burger equation and the 2-D Navier-Stokes equations for driven flow in a cavity. Sharp gradients, singularities, and regions of poor resolution are resolved optimally as they develop in time using error estimators which indicate the choice of refinement to be used. The adaptive formulation presents significant increases in efficiency, flexibility, and general capabilities for high order spectral methods.

  5. Simulation of confined magnetohydrodynamic flows with Dirichlet boundary conditions using a pseudo-spectral method with volume penalization

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Morales, Jorge A.; Leroy, Matthieu; Bos, Wouter J.T.

    A volume penalization approach to simulate magnetohydrodynamic (MHD) flows in confined domains is presented. Here the incompressible visco-resistive MHD equations are solved using parallel pseudo-spectral solvers in Cartesian geometries. The volume penalization technique is an immersed boundary method which is characterized by a high flexibility for the geometry of the considered flow. In the present case, it allows to use other than periodic boundary conditions in a Fourier pseudo-spectral approach. The numerical method is validated and its convergence is assessed for two- and three-dimensional hydrodynamic (HD) and MHD flows, by comparing the numerical results with results from literature and analyticalmore » solutions. The test cases considered are two-dimensional Taylor–Couette flow, the z-pinch configuration, three dimensional Orszag–Tang flow, Ohmic-decay in a periodic cylinder, three-dimensional Taylor–Couette flow with and without axial magnetic field and three-dimensional Hartmann-instabilities in a cylinder with an imposed helical magnetic field. Finally, we present a magnetohydrodynamic flow simulation in toroidal geometry with non-symmetric cross section and imposing a helical magnetic field to illustrate the potential of the method.« less

  6. Mapped Chebyshev Pseudo-Spectral Method for Dynamic Aero-Elastic Problem of Limit Cycle Oscillation

    NASA Astrophysics Data System (ADS)

    Im, Dong Kyun; Kim, Hyun Soon; Choi, Seongim

    2018-05-01

    A mapped Chebyshev pseudo-spectral method is developed as one of the Fourier-spectral approaches and solves nonlinear PDE systems for unsteady flows and dynamic aero-elastic problem in a given time interval, where the flows or elastic motions can be periodic, nonperiodic, or periodic with an unknown frequency. The method uses the Chebyshev polynomials of the first kind for the basis function and redistributes the standard Chebyshev-Gauss-Lobatto collocation points more evenly by a conformal mapping function for improved numerical stability. Contributions of the method are several. It can be an order of magnitude more efficient than the conventional finite difference-based, time-accurate computation, depending on the complexity of solutions and the number of collocation points. The method reformulates the dynamic aero-elastic problem in spectral form for coupled analysis of aerodynamics and structures, which can be effective for design optimization of unsteady and dynamic problems. A limit cycle oscillation (LCO) is chosen for the validation and a new method to determine the LCO frequency is introduced based on the minimization of a second derivative of the aero-elastic formulation. Two examples of the limit cycle oscillation are tested: nonlinear, one degree-of-freedom mass-spring-damper system and two degrees-of-freedom oscillating airfoil under pitch and plunge motions. Results show good agreements with those of the conventional time-accurate simulations and wind tunnel experiments.

  7. On pseudo-spectral time discretizations in summation-by-parts form

    NASA Astrophysics Data System (ADS)

    Ruggiu, Andrea A.; Nordström, Jan

    2018-05-01

    Fully-implicit discrete formulations in summation-by-parts form for initial-boundary value problems must be invertible in order to provide well functioning procedures. We prove that, under mild assumptions, pseudo-spectral collocation methods for the time derivative lead to invertible discrete systems when energy-stable spatial discretizations are used.

  8. A novel alignment-free method to classify protein folding types by combining spectral graph clustering with Chou's pseudo amino acid composition.

    PubMed

    Tripathi, Pooja; Pandey, Paras N

    2017-07-07

    The present work employs pseudo amino acid composition (PseAAC) for encoding the protein sequences in their numeric form. Later this will be arranged in the similarity matrix, which serves as input for spectral graph clustering method. Spectral methods are used previously also for clustering of protein sequences, but they uses pair wise alignment scores of protein sequences, in similarity matrix. The alignment score depends on the length of sequences, so clustering short and long sequences together may not good idea. Therefore the idea of introducing PseAAC with spectral clustering algorithm came into scene. We extensively tested our method and compared its performance with other existing machine learning methods. It is consistently observed that, the number of clusters that we obtained for a given set of proteins is close to the number of superfamilies in that set and PseAAC combined with spectral graph clustering shows the best classification results. Copyright © 2017 Elsevier Ltd. All rights reserved.

  9. An adaptive band selection method for dimension reduction of hyper-spectral remote sensing image

    NASA Astrophysics Data System (ADS)

    Yu, Zhijie; Yu, Hui; Wang, Chen-sheng

    2014-11-01

    Hyper-spectral remote sensing data can be acquired by imaging the same area with multiple wavelengths, and it normally consists of hundreds of band-images. Hyper-spectral images can not only provide spatial information but also high resolution spectral information, and it has been widely used in environment monitoring, mineral investigation and military reconnaissance. However, because of the corresponding large data volume, it is very difficult to transmit and store Hyper-spectral images. Hyper-spectral image dimensional reduction technique is desired to resolve this problem. Because of the High relation and high redundancy of the hyper-spectral bands, it is very feasible that applying the dimensional reduction method to compress the data volume. This paper proposed a novel band selection-based dimension reduction method which can adaptively select the bands which contain more information and details. The proposed method is based on the principal component analysis (PCA), and then computes the index corresponding to every band. The indexes obtained are then ranked in order of magnitude from large to small. Based on the threshold, system can adaptively and reasonably select the bands. The proposed method can overcome the shortcomings induced by transform-based dimension reduction method and prevent the original spectral information from being lost. The performance of the proposed method has been validated by implementing several experiments. The experimental results show that the proposed algorithm can reduce the dimensions of hyper-spectral image with little information loss by adaptively selecting the band images.

  10. Adaptive pseudo-color enhancement method of weld radiographic images based on HSI color space and self-transformation of pixels.

    PubMed

    Jiang, Hongquan; Zhao, Yalin; Gao, Jianmin; Gao, Zhiyong

    2017-06-01

    The radiographic testing (RT) image of a steam turbine manufacturing enterprise has the characteristics of low gray level, low contrast, and blurriness, which lead to a substandard image quality. Moreover, it is not conducive for human eyes to detect and evaluate defects. This study proposes an adaptive pseudo-color enhancement method for weld radiographic images based on the hue, saturation, and intensity (HSI) color space and the self-transformation of pixels to solve these problems. First, the pixel's self-transformation is performed to the pixel value of the original RT image. The function value after the pixel's self-transformation is assigned to the HSI components in the HSI color space. Thereafter, the average intensity of the enhanced image is adaptively adjusted to 0.5 according to the intensity of the original image. Moreover, the hue range and interval can be adjusted according to personal habits. Finally, the HSI components after the adaptive adjustment can be transformed to display in the red, green, and blue color space. Numerous weld radiographic images from a steam turbine manufacturing enterprise are used to validate the proposed method. The experimental results show that the proposed pseudo-color enhancement method can improve image definition and make the target and background areas distinct in weld radiographic images. The enhanced images will be more conducive for defect recognition. Moreover, the image enhanced using the proposed method conforms to the human eye visual properties, and the effectiveness of defect recognition and evaluation can be ensured.

  11. Adaptive pseudo-color enhancement method of weld radiographic images based on HSI color space and self-transformation of pixels

    NASA Astrophysics Data System (ADS)

    Jiang, Hongquan; Zhao, Yalin; Gao, Jianmin; Gao, Zhiyong

    2017-06-01

    The radiographic testing (RT) image of a steam turbine manufacturing enterprise has the characteristics of low gray level, low contrast, and blurriness, which lead to a substandard image quality. Moreover, it is not conducive for human eyes to detect and evaluate defects. This study proposes an adaptive pseudo-color enhancement method for weld radiographic images based on the hue, saturation, and intensity (HSI) color space and the self-transformation of pixels to solve these problems. First, the pixel's self-transformation is performed to the pixel value of the original RT image. The function value after the pixel's self-transformation is assigned to the HSI components in the HSI color space. Thereafter, the average intensity of the enhanced image is adaptively adjusted to 0.5 according to the intensity of the original image. Moreover, the hue range and interval can be adjusted according to personal habits. Finally, the HSI components after the adaptive adjustment can be transformed to display in the red, green, and blue color space. Numerous weld radiographic images from a steam turbine manufacturing enterprise are used to validate the proposed method. The experimental results show that the proposed pseudo-color enhancement method can improve image definition and make the target and background areas distinct in weld radiographic images. The enhanced images will be more conducive for defect recognition. Moreover, the image enhanced using the proposed method conforms to the human eye visual properties, and the effectiveness of defect recognition and evaluation can be ensured.

  12. High precision computing with charge domain devices and a pseudo-spectral method therefor

    NASA Technical Reports Server (NTRS)

    Barhen, Jacob (Inventor); Toomarian, Nikzad (Inventor); Fijany, Amir (Inventor); Zak, Michail (Inventor)

    1997-01-01

    The present invention enhances the bit resolution of a CCD/CID MVM processor by storing each bit of each matrix element as a separate CCD charge packet. The bits of each input vector are separately multiplied by each bit of each matrix element in massive parallelism and the resulting products are combined appropriately to synthesize the correct product. In another aspect of the invention, such arrays are employed in a pseudo-spectral method of the invention, in which partial differential equations are solved by expressing each derivative analytically as matrices, and the state function is updated at each computation cycle by multiplying it by the matrices. The matrices are treated as synaptic arrays of a neural network and the state function vector elements are treated as neurons. In a further aspect of the invention, moving target detection is performed by driving the soliton equation with a vector of detector outputs. The neural architecture consists of two synaptic arrays corresponding to the two differential terms of the soliton-equation and an adder connected to the output thereof and to the output of the detector array to drive the soliton equation.

  13. A Comparison of Spectral Element and Finite Difference Methods Using Statically Refined Nonconforming Grids for the MHD Island Coalescence Instability Problem

    NASA Astrophysics Data System (ADS)

    Ng, C. S.; Rosenberg, D.; Pouquet, A.; Germaschewski, K.; Bhattacharjee, A.

    2009-04-01

    A recently developed spectral-element adaptive refinement incompressible magnetohydrodynamic (MHD) code [Rosenberg, Fournier, Fischer, Pouquet, J. Comp. Phys. 215, 59-80 (2006)] is applied to simulate the problem of MHD island coalescence instability (\\ci) in two dimensions. \\ci is a fundamental MHD process that can produce sharp current layers and subsequent reconnection and heating in a high-Lundquist number plasma such as the solar corona [Ng and Bhattacharjee, Phys. Plasmas, 5, 4028 (1998)]. Due to the formation of thin current layers, it is highly desirable to use adaptively or statically refined grids to resolve them, and to maintain accuracy at the same time. The output of the spectral-element static adaptive refinement simulations are compared with simulations using a finite difference method on the same refinement grids, and both methods are compared to pseudo-spectral simulations with uniform grids as baselines. It is shown that with the statically refined grids roughly scaling linearly with effective resolution, spectral element runs can maintain accuracy significantly higher than that of the finite difference runs, in some cases achieving close to full spectral accuracy.

  14. Convergent dental adaptations in pseudo-tribosphenic and tribosphenic mammals.

    PubMed

    Luo, Zhe-Xi; Ji, Qiang; Yuan, Chong-Xi

    2007-11-01

    Tribosphenic molars of basal marsupials and placentals are a major adaptation, with the protocone (pestle) of the upper molar crushing and grinding in the talonid basin (mortar) on the lower molar. The extinct pseudo-tribosphenic mammals have a reversed tribosphenic molar in which a pseudo-talonid is anterior to the trigonid, to receive the pseudo-protocone of the upper molar. The pseudo-protocone is analogous to the protocone, but the anteriorly placed pseudo-talonid is opposite to the posterior talonid basin of true tribosphenic mammals. Here we describe a mammal of the Middle Jurassic period with highly derived pseudo-tribosphenic molars but predominantly primitive mandibular and skeletal features, and place it in a basal position in mammal phylogeny. Its shoulder girdle and limbs show fossorial features similar to those of mammaliaforms and monotremes, but different compared with those of the earliest-known Laurasian tribosphenic (boreosphenid) mammals. The find reveals a much greater range of dental evolution in Mesozoic mammals than in their extant descendants, and strengthens the hypothesis of homoplasy of 'tribosphenic-like' molars among mammals.

  15. Perceptual Adaptation of Voice Gender Discrimination with Spectrally Shifted Vowels

    ERIC Educational Resources Information Center

    Li, Tianhao; Fu, Qian-Jie

    2011-01-01

    Purpose: To determine whether perceptual adaptation improves voice gender discrimination of spectrally shifted vowels and, if so, which acoustic cues contribute to the improvement. Method: Voice gender discrimination was measured for 10 normal-hearing subjects, during 5 days of adaptation to spectrally shifted vowels, produced by processing the…

  16. Pseudo-spectral methodology for a quantitative assessment of the cover of in-stream vegetation in small streams

    NASA Astrophysics Data System (ADS)

    Hershkovitz, Yaron; Anker, Yaakov; Ben-Dor, Eyal; Schwartz, Guy; Gasith, Avital

    2010-05-01

    In-stream vegetation is a key ecosystem component in many fluvial ecosystems, having cascading effects on stream conditions and biotic structure. Traditionally, ground-level surveys (e.g. grid and transect analyses) are commonly used for estimating cover of aquatic macrophytes. Nonetheless, this methodological approach is highly time consuming and usually yields information which is practically limited to habitat and sub-reach scales. In contrast, remote-sensing techniques (e.g. satellite imagery and airborne photography), enable collection of large datasets over section, stream and basin scales, in relatively short time and reasonable cost. However, the commonly used spatial high resolution (1m) is often inadequate for examining aquatic vegetation on habitat or sub-reach scales. We examined the utility of a pseudo-spectral methodology, using RGB digital photography for estimating the cover of in-stream vegetation in a small Mediterranean-climate stream. We compared this methodology with that obtained by traditional ground-level grid methodology and with an airborne hyper-spectral remote sensing survey (AISA-ES). The study was conducted along a 2 km section of an intermittent stream (Taninim stream, Israel). When studied, the stream was dominated by patches of watercress (Nasturtium officinale) and mats of filamentous algae (Cladophora glomerata). The extent of vegetation cover at the habitat and section scales (100 and 104 m, respectively) were estimated by the pseudo-spectral methodology, using an airborne Roli camera with a Phase-One P 45 (39 MP) CCD image acquisition unit. The swaths were taken in elevation of about 460 m having a spatial resolution of about 4 cm (NADIR). For measuring vegetation cover at the section scale (104 m) we also used a 'push-broom' AISA-ES hyper-spectral swath having a sensor configuration of 182 bands (350-2500 nm) at elevation of ca. 1,200 m (i.e. spatial resolution of ca. 1 m). Simultaneously, with every swath we used an Analytical

  17. Challenges at Petascale for Pseudo-Spectral Methods on Spheres (A Last Hurrah?)

    NASA Technical Reports Server (NTRS)

    Clune, Thomas

    2011-01-01

    Conclusions: a) Proper software abstractions should enable rapid-exploration of platform-specific optimizations/ tradeoffs. b) Pseudo-spectra! methods are marginally viable for at least some classes of petascaie problems. i.e., GPU based machine with good bisection would be best. c) Scalability at exascale is possible, but the necessary resolution will make algorithm prohibitively expensive. Efficient implementations of realistic global transposes are mtricate and tedious in MPI. PS at petascaie requires exploration of a variety of strategies for spreading local and remote communic3tions. PGAS allows far simpler implementation and thus rapid exploration of variants.

  18. Perceptual Adaptation of Voice Gender Discrimination with Spectrally Shifted Vowels

    PubMed Central

    Li, Tianhao; Fu, Qian-Jie

    2013-01-01

    Purpose To determine whether perceptual adaptation improves voice gender discrimination of spectrally shifted vowels and, if so, which acoustic cues contribute to the improvement. Method Voice gender discrimination was measured for 10 normal-hearing subjects, during 5 days of adaptation to spectrally shifted vowels, produced by processing the speech of 5 male and 5 female talkers with 16-channel sine-wave vocoders. The subjects were randomly divided into 2 groups; one subjected to 50-Hz, and the other to 200-Hz, temporal envelope cutoff frequencies. No preview or feedback was provided. Results: There was significant adaptation in voice gender discrimination with the 200-Hz cutoff frequency, but significant improvement was observed only for 3 female talkers with F0 > 180 Hz and 3 male talkers with F0 < 170 Hz. There was no significant adaptation with the 50-Hz cutoff frequency. Conclusions Temporal envelope cues are important for voice gender discrimination under spectral shift conditions with perceptual adaptation, but spectral shift may limit the exclusive use of spectral information and/or the use of formant structure on voice gender discrimination. The results have implications for cochlear implant users and for understanding voice gender discrimination. PMID:21173392

  19. Spectral decomposition of seismic data with reassigned smoothed pseudo Wigner-Ville distribution

    NASA Astrophysics Data System (ADS)

    Wu, Xiaoyang; Liu, Tianyou

    2009-07-01

    Seismic signals are nonstationary mainly due to absorption and attenuation of seismic energy in strata. Referring to spectral decomposition of seismic data, the conventional method using short-time Fourier transform (STFT) limits temporal and spectral resolution by a predefined window length. Continuous-wavelet transform (CWT) uses dilation and translation of a wavelet to produce a time-scale map. However, the wavelets utilized should be orthogonal in order to obtain a satisfactory resolution. The less applied, Wigner-Ville distribution (WVD) being superior in energy distribution concentration, is confronted with cross-terms interference (CTI) when signals are multi-component. In order to reduce the impact of CTI, Cohen class uses kernel function as low-pass filter. Nevertheless it also weakens energy concentration of auto-terms. In this paper, we employ smoothed pseudo Wigner-Ville distribution (SPWVD) with Gauss kernel function to reduce CTI in time and frequency domain, then reassign values of SPWVD (called reassigned SPWVD) according to the center of gravity of the considering energy region so that distribution concentration is maintained simultaneously. We conduct the method above on a multi-component synthetic seismic record and compare with STFT and CWT spectra. Two field examples reveal that RSPWVD potentially can be applied to detect low-frequency shadows caused by hydrocarbons and to delineate the space distribution of abnormal geological body more precisely.

  20. Inversion of Density Interfaces Using the Pseudo-Backpropagation Neural Network Method

    NASA Astrophysics Data System (ADS)

    Chen, Xiaohong; Du, Yukun; Liu, Zhan; Zhao, Wenju; Chen, Xiaocheng

    2018-05-01

    This paper presents a new pseudo-backpropagation (BP) neural network method that can invert multi-density interfaces at one time. The new method is based on the conventional forward modeling and inverse modeling theories in addition to conventional pseudo-BP neural network arithmetic. A 3D inversion model for gravity anomalies of multi-density interfaces using the pseudo-BP neural network method is constructed after analyzing the structure and function of the artificial neural network. The corresponding iterative inverse formula of the space field is presented at the same time. Based on trials of gravity anomalies and density noise, the influence of the two kinds of noise on the inverse result is discussed and the scale of noise requested for the stability of the arithmetic is analyzed. The effects of the initial model on the reduction of the ambiguity of the result and improvement of the precision of inversion are discussed. The correctness and validity of the method were verified by the 3D model of the three interfaces. 3D inversion was performed on the observed gravity anomaly data of the Okinawa trough using the program presented herein. The Tertiary basement and Moho depth were obtained from the inversion results, which also testify the adaptability of the method. This study has made a useful attempt for the inversion of gravity density interfaces.

  1. Efficient adaptive pseudo-symplectic numerical integration techniques for Landau-Lifshitz dynamics

    NASA Astrophysics Data System (ADS)

    d'Aquino, M.; Capuano, F.; Coppola, G.; Serpico, C.; Mayergoyz, I. D.

    2018-05-01

    Numerical time integration schemes for Landau-Lifshitz magnetization dynamics are considered. Such dynamics preserves the magnetization amplitude and, in the absence of dissipation, also implies the conservation of the free energy. This property is generally lost when time discretization is performed for the numerical solution. In this work, explicit numerical schemes based on Runge-Kutta methods are introduced. The schemes are termed pseudo-symplectic in that they are accurate to order p, but preserve magnetization amplitude and free energy to order q > p. An effective strategy for adaptive time-stepping control is discussed for schemes of this class. Numerical tests against analytical solutions for the simulation of fast precessional dynamics are performed in order to point out the effectiveness of the proposed methods.

  2. Adaptation to spectrally-rotated speech.

    PubMed

    Green, Tim; Rosen, Stuart; Faulkner, Andrew; Paterson, Ruth

    2013-08-01

    Much recent interest surrounds listeners' abilities to adapt to various transformations that distort speech. An extreme example is spectral rotation, in which the spectrum of low-pass filtered speech is inverted around a center frequency (2 kHz here). Spectral shape and its dynamics are completely altered, rendering speech virtually unintelligible initially. However, intonation, rhythm, and contrasts in periodicity and aperiodicity are largely unaffected. Four normal hearing adults underwent 6 h of training with spectrally-rotated speech using Continuous Discourse Tracking. They and an untrained control group completed pre- and post-training speech perception tests, for which talkers differed from the training talker. Significantly improved recognition of spectrally-rotated sentences was observed for trained, but not untrained, participants. However, there were no significant improvements in the identification of medial vowels in /bVd/ syllables or intervocalic consonants. Additional tests were performed with speech materials manipulated so as to isolate the contribution of various speech features. These showed that preserving intonational contrasts did not contribute to the comprehension of spectrally-rotated speech after training, and suggested that improvements involved adaptation to altered spectral shape and dynamics, rather than just learning to focus on speech features relatively unaffected by the transformation.

  3. Optimal Design of Passive Power Filters Based on Pseudo-parallel Genetic Algorithm

    NASA Astrophysics Data System (ADS)

    Li, Pei; Li, Hongbo; Gao, Nannan; Niu, Lin; Guo, Liangfeng; Pei, Ying; Zhang, Yanyan; Xu, Minmin; Chen, Kerui

    2017-05-01

    The economic costs together with filter efficiency are taken as targets to optimize the parameter of passive filter. Furthermore, the method of combining pseudo-parallel genetic algorithm with adaptive genetic algorithm is adopted in this paper. In the early stages pseudo-parallel genetic algorithm is introduced to increase the population diversity, and adaptive genetic algorithm is used in the late stages to reduce the workload. At the same time, the migration rate of pseudo-parallel genetic algorithm is improved to change with population diversity adaptively. Simulation results show that the filter designed by the proposed method has better filtering effect with lower economic cost, and can be used in engineering.

  4. Robustness study of the pseudo open-loop controller for multiconjugate adaptive optics.

    PubMed

    Piatrou, Piotr; Gilles, Luc

    2005-02-20

    Robustness of the recently proposed "pseudo open-loop control" algorithm against various system errors has been investigated for the representative example of the Gemini-South 8-m telescope multiconjugate adaptive-optics system. The existing model to represent the adaptive-optics system with pseudo open-loop control has been modified to account for misalignments, noise and calibration errors in deformable mirrors, and wave-front sensors. Comparison with the conventional least-squares control model has been done. We show with the aid of both transfer-function pole-placement analysis and Monte Carlo simulations that POLC remains remarkably stable and robust against very large levels of system errors and outperforms in this respect least-squares control. Approximate stability margins as well as performance metrics such as Strehl ratios and rms wave-front residuals averaged over a 1-arc min field of view have been computed for different types and levels of system errors to quantify the expected performance degradation.

  5. A robust pseudo-inverse spectral filter applied to the Earth Radiation Budget Experiment (ERBE) scanning channels

    NASA Technical Reports Server (NTRS)

    Avis, L. M.; Green, R. N.; Suttles, J. T.; Gupta, S. K.

    1984-01-01

    Computer simulations of a least squares estimator operating on the ERBE scanning channels are discussed. The estimator is designed to minimize the errors produced by nonideal spectral response to spectrally varying and uncertain radiant input. The three ERBE scanning channels cover a shortwave band a longwave band and a ""total'' band from which the pseudo inverse spectral filter estimates the radiance components in the shortwave band and a longwave band. The radiance estimator draws on instantaneous field of view (IFOV) scene type information supplied by another algorithm of the ERBE software, and on a priori probabilistic models of the responses of the scanning channels to the IFOV scene types for given Sun scene spacecraft geometry. It is found that the pseudoinverse spectral filter is stable, tolerant of errors in scene identification and in channel response modeling, and, in the absence of such errors, yields minimum variance and essentially unbiased radiance estimates.

  6. Adaptation to an electropalatograph palate: acoustic, impressionistic, and perceptual data.

    PubMed

    McLeod, Sharynne; Searl, Jeff

    2006-05-01

    The purpose of this study was to evaluate adaptation to the electropalatograph (EPG) from the perspective of consonant acoustics, listener perceptions, and speaker ratings. Seven adults with typical speech wore an EPG and pseudo-EPG palate over 2 days and produced syllables, read a passage, counted, and rated their adaptation to the palate. Consonant acoustics, listener ratings, and speaker ratings were analyzed. The spectral mean for the burst (/t/) and frication (/s/) was reduced for the first 60-120 min of wearing the pseudo-EPG palate. Temporal features (stop gap, frication, and syllable duration) were unaffected by wearing the pseudo-EPG palate. The EPG palate had a similar effect on consonant acoustics as the pseudo-EPG palate. Expert listener ratings indicated minimal to no change in speech naturalness or distortion from the pseudo-EPG or EPG palate. The sounds [see text] were most likely to be affected. Speaker self-ratings related to oral comfort, speech, tongue movement, appearance, and oral sensation were negatively affected by the presence of the palatal devices. Speakers detected a substantial difference when wearing a palatal device, but the effects on speech were minimal based on listener ratings. Spectral features of consonants were initially affected, although adaptation occurred. Wearing an EPG or pseudo-EPG palate for approximately 2 hr results in relatively normal-sounding speech with acoustic features similar to a no-palate condition.

  7. Feasibility of MR-only proton dose calculations for prostate cancer radiotherapy using a commercial pseudo-CT generation method

    NASA Astrophysics Data System (ADS)

    Maspero, Matteo; van den Berg, Cornelis A. T.; Landry, Guillaume; Belka, Claus; Parodi, Katia; Seevinck, Peter R.; Raaymakers, Bas W.; Kurz, Christopher

    2017-12-01

    A magnetic resonance (MR)-only radiotherapy workflow can reduce cost, radiation exposure and uncertainties introduced by CT-MRI registration. A crucial prerequisite is generating the so called pseudo-CT (pCT) images for accurate dose calculation and planning. Many pCT generation methods have been proposed in the scope of photon radiotherapy. This work aims at verifying for the first time whether a commercially available photon-oriented pCT generation method can be employed for accurate intensity-modulated proton therapy (IMPT) dose calculation. A retrospective study was conducted on ten prostate cancer patients. For pCT generation from MR images, a commercial solution for creating bulk-assigned pCTs, called MR for Attenuation Correction (MRCAT), was employed. The assigned pseudo-Hounsfield Unit (HU) values were adapted to yield an increased agreement to the reference CT in terms of proton range. Internal air cavities were copied from the CT to minimise inter-scan differences. CT- and MRCAT-based dose calculations for opposing beam IMPT plans were compared by gamma analysis and evaluation of clinically relevant target and organ at risk dose volume histogram (DVH) parameters. The proton range in beam’s eye view (BEV) was compared using single field uniform dose (SFUD) plans. On average, a (2%, 2 mm) gamma pass rate of 98.4% was obtained using a 10% dose threshold after adaptation of the pseudo-HU values. Mean differences between CT- and MRCAT-based dose in the DVH parameters were below 1 Gy (<1.5% ). The median proton range difference was 0.1 mm, with on average 96% of all BEV dose profiles showing a range agreement better than 3 mm. Results suggest that accurate MR-based proton dose calculation using an automatic commercial bulk-assignment pCT generation method, originally designed for photon radiotherapy, is feasible following adaptation of the assigned pseudo-HU values.

  8. Pseudo second order kinetics and pseudo isotherms for malachite green onto activated carbon: comparison of linear and non-linear regression methods.

    PubMed

    Kumar, K Vasanth; Sivanesan, S

    2006-08-25

    Pseudo second order kinetic expressions of Ho, Sobkowsk and Czerwinski, Blanachard et al. and Ritchie were fitted to the experimental kinetic data of malachite green onto activated carbon by non-linear and linear method. Non-linear method was found to be a better way of obtaining the parameters involved in the second order rate kinetic expressions. Both linear and non-linear regression showed that the Sobkowsk and Czerwinski and Ritchie's pseudo second order model were the same. Non-linear regression analysis showed that both Blanachard et al. and Ho have similar ideas on the pseudo second order model but with different assumptions. The best fit of experimental data in Ho's pseudo second order expression by linear and non-linear regression method showed that Ho pseudo second order model was a better kinetic expression when compared to other pseudo second order kinetic expressions. The amount of dye adsorbed at equilibrium, q(e), was predicted from Ho pseudo second order expression and were fitted to the Langmuir, Freundlich and Redlich Peterson expressions by both linear and non-linear method to obtain the pseudo isotherms. The best fitting pseudo isotherm was found to be the Langmuir and Redlich Peterson isotherm. Redlich Peterson is a special case of Langmuir when the constant g equals unity.

  9. Nonconforming mortar element methods: Application to spectral discretizations

    NASA Technical Reports Server (NTRS)

    Maday, Yvon; Mavriplis, Cathy; Patera, Anthony

    1988-01-01

    Spectral element methods are p-type weighted residual techniques for partial differential equations that combine the generality of finite element methods with the accuracy of spectral methods. Presented here is a new nonconforming discretization which greatly improves the flexibility of the spectral element approach as regards automatic mesh generation and non-propagating local mesh refinement. The method is based on the introduction of an auxiliary mortar trace space, and constitutes a new approach to discretization-driven domain decomposition characterized by a clean decoupling of the local, structure-preserving residual evaluations and the transmission of boundary and continuity conditions. The flexibility of the mortar method is illustrated by several nonconforming adaptive Navier-Stokes calculations in complex geometry.

  10. A linear shock cell model for non-circular jets using conformal mapping with a pseudo-spectral hybrid scheme

    NASA Technical Reports Server (NTRS)

    Bhat, Thonse R. S.; Baty, Roy S.; Morris, Philip J.

    1990-01-01

    The shock structure in non-circular supersonic jets is predicted using a linear model. This model includes the effects of the finite thickness of the mixing layer and the turbulence in the jet shear layer. A numerical solution is obtained using a conformal mapping grid generation scheme with a hybrid pseudo-spectral discretization method. The uniform pressure perturbation at the jet exit is approximated by a Fourier-Mathieu series. The pressure at downstream locations is obtained from an eigenfunction expansion that is matched to the pressure perturbation at the jet exit. Results are presented for a circular jet and for an elliptic jet of aspect ratio 2.0. Comparisons are made with experimental data.

  11. Nonlocal Coulomb correlations in pure and electron-doped Sr2IrO4 : Spectral functions, Fermi surface, and pseudo-gap-like spectral weight distributions from oriented cluster dynamical mean-field theory

    NASA Astrophysics Data System (ADS)

    Martins, Cyril; Lenz, Benjamin; Perfetti, Luca; Brouet, Veronique; Bertran, François; Biermann, Silke

    2018-03-01

    We address the role of nonlocal Coulomb correlations and short-range magnetic fluctuations in the high-temperature phase of Sr2IrO4 within state-of-the-art spectroscopic and first-principles theoretical methods. Introducing an "oriented-cluster dynamical mean-field scheme", we compute momentum-resolved spectral functions, which we find to be in excellent agreement with angle-resolved photoemission spectra. We show that while short-range antiferromagnetic fluctuations are crucial to accounting for the electronic properties of Sr2IrO4 even in the high-temperature paramagnetic phase, long-range magnetic order is not a necessary ingredient of the insulating state. Upon doping, an exotic metallic state is generated, exhibiting cuprate-like pseudo-gap spectral properties, for which we propose a surprisingly simple theoretical mechanism.

  12. Perceptual adaptation of voice gender discrimination with spectrally shifted vowels.

    PubMed

    Li, Tianhao; Fu, Qian-Jie

    2011-08-01

    To determine whether perceptual adaptation improves voice gender discrimination of spectrally shifted vowels and, if so, which acoustic cues contribute to the improvement. Voice gender discrimination was measured for 10 normal-hearing subjects, during 5 days of adaptation to spectrally shifted vowels, produced by processing the speech of 5 male and 5 female talkers with 16-channel sine-wave vocoders. The subjects were randomly divided into 2 groups; one subjected to 50-Hz, and the other to 200-Hz, temporal envelope cutoff frequencies. No preview or feedback was provided. There was significant adaptation in voice gender discrimination with the 200-Hz cutoff frequency, but significant improvement was observed only for 3 female talkers with F(0) > 180 Hz and 3 male talkers with F(0) < 170 Hz. There was no significant adaptation with the 50-Hz cutoff frequency. Temporal envelope cues are important for voice gender discrimination under spectral shift conditions with perceptual adaptation, but spectral shift may limit the exclusive use of spectral information and/or the use of formant structure on voice gender discrimination. The results have implications for cochlear implant users and for understanding voice gender discrimination.

  13. Validation of the SCEC broadband platform V14.3 simulation methods using pseudo spectral acceleration data

    USGS Publications Warehouse

    Dreger, Douglas S.; Beroza, Gregory C.; Day, Steven M.; Goulet, Christine A.; Jordan, Thomas H; Spudich, Paul A.; Stewart, Jonathan P.

    2015-01-01

    This paper summarizes the evaluation of ground motion simulation methods implemented on the SCEC Broadband Platform (BBP), version 14.3 (as of March 2014). A seven-member panel, the authorship of this article, was formed to evaluate those methods for the prediction of pseudo-­‐spectral accelerations (PSAs) of ground motion. The panel’s mandate was to evaluate the methods using tools developed through the validation exercise (Goulet et al. ,2014), and to define validation metrics for the assessment of the methods’ performance. This paper summarizes the evaluation process and conclusions from the panel. The five broadband, finite-source simulation methods on the BBP include two deterministic approaches herein referred to as CSM (Anderson, 2014) and UCSB (Crempien and Archuleta, 2014); a band-­‐limited stochastic white noise method called EXSIM (Atkinson and Assatourians, 2014); and two hybrid approaches, referred to as G&P (Graves and Pitarka, 2014) and SDSU (Olsen and Takedatsu, 2014), which utilize a deterministic Green’s function approach for periods longer than 1 second and stochastic methods for periods shorter than 1 second. Two acceptance tests were defined to validate the broadband finite‐source ground methods (Goulet et al., 2014). Part A compared observed and simulated PSAs for periods from 0.01 to 10 seconds for 12 moderate to large earthquakes located in California, Japan, and the eastern US. Part B compared the median simulated PSAs to published NGA-­‐West1 (Abrahamson and Silva, 2008; Boore and Atkinson, 2008; Campbell and Bozorgnia, 2008; and Chiou and Youngs, 2008) ground motion prediction equations (GMPEs) for specific magnitude and distance cases using a pass-­‐fail criteria based on a defined acceptable range around the spectral shape of the GMPEs. For the initial Part A and Part B validation exercises during the summer of 2013, the software for the five methods was locked in at version 13.6 (see Maechling et al., 2014). In the

  14. A spatially adaptive spectral re-ordering technique for lossless coding of hyper-spectral images

    NASA Technical Reports Server (NTRS)

    Memon, Nasir D.; Galatsanos, Nikolas

    1995-01-01

    In this paper, we propose a new approach, applicable to lossless compression of hyper-spectral images, that alleviates some limitations of linear prediction as applied to this problem. According to this approach, an adaptive re-ordering of the spectral components of each pixel is performed prior to prediction and encoding. This re-ordering adaptively exploits, on a pixel-by pixel basis, the presence of inter-band correlations for prediction. Furthermore, the proposed approach takes advantage of spatial correlations, and does not introduce any coding overhead to transmit the order of the spectral bands. This is accomplished by using the assumption that two spatially adjacent pixels are expected to have similar spectral relationships. We thus have a simple technique to exploit spectral and spatial correlations in hyper-spectral data sets, leading to compression performance improvements as compared to our previously reported techniques for lossless compression. We also look at some simple error modeling techniques for further exploiting any structure that remains in the prediction residuals prior to entropy coding.

  15. Spectral analysis comparisons of Fourier-theory-based methods and minimum variance (Capon) methods

    NASA Astrophysics Data System (ADS)

    Garbanzo-Salas, Marcial; Hocking, Wayne. K.

    2015-09-01

    In recent years, adaptive (data dependent) methods have been introduced into many areas where Fourier spectral analysis has traditionally been used. Although the data-dependent methods are often advanced as being superior to Fourier methods, they do require some finesse in choosing the order of the relevant filters. In performing comparisons, we have found some concerns about the mappings, particularly when related to cases involving many spectral lines or even continuous spectral signals. Using numerical simulations, several comparisons between Fourier transform procedures and minimum variance method (MVM) have been performed. For multiple frequency signals, the MVM resolves most of the frequency content only for filters that have more degrees of freedom than the number of distinct spectral lines in the signal. In the case of Gaussian spectral approximation, MVM will always underestimate the width, and can misappropriate the location of spectral line in some circumstances. Large filters can be used to improve results with multiple frequency signals, but are computationally inefficient. Significant biases can occur when using MVM to study spectral information or echo power from the atmosphere. Artifacts and artificial narrowing of turbulent layers is one such impact.

  16. Optimal spectral tracking--adapting to dynamic regime change.

    PubMed

    Brittain, John-Stuart; Halliday, David M

    2011-01-30

    Real world data do not always obey the statistical restraints imposed upon them by sophisticated analysis techniques. In spectral analysis for instance, an ergodic process--the interchangeability of temporal for spatial averaging--is assumed for a repeat-trial design. Many evolutionary scenarios, such as learning and motor consolidation, do not conform to such linear behaviour and should be approached from a more flexible perspective. To this end we previously introduced the method of optimal spectral tracking (OST) in the study of trial-varying parameters. In this extension to our work we modify the OST routines to provide an adaptive implementation capable of reacting to dynamic transitions in the underlying system state. In so doing, we generalise our approach to characterise both slow-varying and rapid fluctuations in time-series, simultaneously providing a metric of system stability. The approach is first applied to a surrogate dataset and compared to both our original non-adaptive solution and spectrogram approaches. The adaptive OST is seen to display fast convergence and desirable statistical properties. All three approaches are then applied to a neurophysiological recording obtained during a study on anaesthetic monitoring. Local field potentials acquired from the posterior hypothalamic region of a deep brain stimulation patient undergoing anaesthesia were analysed. The characterisation of features such as response delay, time-to-peak and modulation brevity are considered. Copyright © 2010 Elsevier B.V. All rights reserved.

  17. Improvement to the scanning electron microscope image adaptive Canny optimization colorization by pseudo-mapping.

    PubMed

    Lo, T Y; Sim, K S; Tso, C P; Nia, M E

    2014-01-01

    An improvement to the previously proposed adaptive Canny optimization technique for scanning electron microscope image colorization is reported. The additional feature, called pseudo-mapping technique, is that the grayscale markings are temporarily mapped to a set of pre-defined pseudo-color map as a mean to instill color information for grayscale colors in chrominance channels. This allows the presence of grayscale markings to be identified; hence optimization colorization of grayscale colors is made possible. This additional feature enhances the flexibility of scanning electron microscope image colorization by providing wider range of possible color enhancement. Furthermore, the nature of this technique also allows users to adjust the luminance intensities of selected region from the original image within certain extent. © 2014 Wiley Periodicals, Inc.

  18. Spectral anomaly methods for aerial detection using KUT nuisance rejection

    NASA Astrophysics Data System (ADS)

    Detwiler, R. S.; Pfund, D. M.; Myjak, M. J.; Kulisek, J. A.; Seifert, C. E.

    2015-06-01

    This work discusses the application and optimization of a spectral anomaly method for the real-time detection of gamma radiation sources from an aerial helicopter platform. Aerial detection presents several key challenges over ground-based detection. For one, larger and more rapid background fluctuations are typical due to higher speeds, larger field of view, and geographically induced background changes. As well, the possible large altitude or stand-off distance variations cause significant steps in background count rate as well as spectral changes due to increased gamma-ray scatter with detection at higher altitudes. The work here details the adaptation and optimization of the PNNL-developed algorithm Nuisance-Rejecting Spectral Comparison Ratios for Anomaly Detection (NSCRAD), a spectral anomaly method previously developed for ground-based applications, for an aerial platform. The algorithm has been optimized for two multi-detector systems; a NaI(Tl)-detector-based system and a CsI detector array. The optimization here details the adaptation of the spectral windows for a particular set of target sources to aerial detection and the tailoring for the specific detectors. As well, the methodology and results for background rejection methods optimized for the aerial gamma-ray detection using Potassium, Uranium and Thorium (KUT) nuisance rejection are shown. Results indicate that use of a realistic KUT nuisance rejection may eliminate metric rises due to background magnitude and spectral steps encountered in aerial detection due to altitude changes and geographically induced steps such as at land-water interfaces.

  19. Fusion of multi-spectral and panchromatic images based on 2D-PWVD and SSIM

    NASA Astrophysics Data System (ADS)

    Tan, Dongjie; Liu, Yi; Hou, Ruonan; Xue, Bindang

    2016-03-01

    A combined method using 2D pseudo Wigner-Ville distribution (2D-PWVD) and structural similarity(SSIM) index is proposed for fusion of low resolution multi-spectral (MS) image and high resolution panchromatic (PAN) image. First, the intensity component of multi-spectral image is extracted with generalized IHS transform. Then, the spectrum diagrams of the intensity components of multi-spectral image and panchromatic image are obtained with 2D-PWVD. Different fusion rules are designed for different frequency information of the spectrum diagrams. SSIM index is used to evaluate the high frequency information of the spectrum diagrams for assigning the weights in the fusion processing adaptively. After the new spectrum diagram is achieved according to the fusion rule, the final fusion image can be obtained by inverse 2D-PWVD and inverse GIHS transform. Experimental results show that, the proposed method can obtain high quality fusion images.

  20. Pseudo spectral collocation with Maxwell polynomials for kinetic equations with energy diffusion

    NASA Astrophysics Data System (ADS)

    Sánchez-Vizuet, Tonatiuh; Cerfon, Antoine J.

    2018-02-01

    We study the approximation and stability properties of a recently popularized discretization strategy for the speed variable in kinetic equations, based on pseudo-spectral collocation on a grid defined by the zeros of a non-standard family of orthogonal polynomials called Maxwell polynomials. Taking a one-dimensional equation describing energy diffusion due to Fokker-Planck collisions with a Maxwell-Boltzmann background distribution as the test bench for the performance of the scheme, we find that Maxwell based discretizations outperform other commonly used schemes in most situations, often by orders of magnitude. This provides a strong motivation for their use in high-dimensional gyrokinetic simulations. However, we also show that Maxwell based schemes are subject to a non-modal time stepping instability in their most straightforward implementation, so that special care must be given to the discrete representation of the linear operators in order to benefit from the advantages provided by Maxwell polynomials.

  1. Pseudo-color coding method for high-dynamic single-polarization SAR images

    NASA Astrophysics Data System (ADS)

    Feng, Zicheng; Liu, Xiaolin; Pei, Bingzhi

    2018-04-01

    A raw synthetic aperture radar (SAR) image usually has a 16-bit or higher bit depth, which cannot be directly visualized on 8-bit displays. In this study, we propose a pseudo-color coding method for high-dynamic singlepolarization SAR images. The method considers the characteristics of both SAR images and human perception. In HSI (hue, saturation and intensity) color space, the method carries out high-dynamic range tone mapping and pseudo-color processing simultaneously in order to avoid loss of details and to improve object identifiability. It is a highly efficient global algorithm.

  2. Degeneracy of energy levels of pseudo-Gaussian oscillators

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Iacob, Theodor-Felix; Iacob, Felix, E-mail: felix@physics.uvt.ro; Lute, Marina

    2015-12-07

    We study the main features of the isotropic radial pseudo-Gaussian oscillators spectral properties. This study is made upon the energy levels degeneracy with respect to orbital angular momentum quantum number. In a previous work [6] we have shown that the pseudo-Gaussian oscillators belong to the class of quasi-exactly solvable models and an exact solution has been found.

  3. [Road Extraction in Remote Sensing Images Based on Spectral and Edge Analysis].

    PubMed

    Zhao, Wen-zhi; Luo, Li-qun; Guo, Zhou; Yue, Jun; Yu, Xue-ying; Liu, Hui; Wei, Jing

    2015-10-01

    Roads are typically man-made objects in urban areas. Road extraction from high-resolution images has important applications for urban planning and transportation development. However, due to the confusion of spectral characteristic, it is difficult to distinguish roads from other objects by merely using traditional classification methods that mainly depend on spectral information. Edge is an important feature for the identification of linear objects (e. g. , roads). The distribution patterns of edges vary greatly among different objects. It is crucial to merge edge statistical information into spectral ones. In this study, a new method that combines spectral information and edge statistical features has been proposed. First, edge detection is conducted by using self-adaptive mean-shift algorithm on the panchromatic band, which can greatly reduce pseudo-edges and noise effects. Then, edge statistical features are obtained from the edge statistical model, which measures the length and angle distribution of edges. Finally, by integrating the spectral and edge statistical features, SVM algorithm is used to classify the image and roads are ultimately extracted. A series of experiments are conducted and the results show that the overall accuracy of proposed method is 93% comparing with only 78% overall accuracy of the traditional. The results demonstrate that the proposed method is efficient and valuable for road extraction, especially on high-resolution images.

  4. Spectral simulations of an axisymmetric force-free pulsar magnetosphere

    NASA Astrophysics Data System (ADS)

    Cao, Gang; Zhang, Li; Sun, Sineng

    2016-02-01

    A pseudo-spectral method with an absorbing outer boundary is used to solve a set of time-dependent force-free equations. In this method, both electric and magnetic fields are expanded in terms of the vector spherical harmonic (VSH) functions in spherical geometry and the divergence-free state of the magnetic field is enforced analytically by a projection method. Our simulations show that the Deutsch vacuum solution and the Michel monopole solution can be reproduced well by our pseudo-spectral code. Further, the method is used to present a time-dependent simulation of the force-free pulsar magnetosphere for an aligned rotator. The simulations show that the current sheet in the equatorial plane can be resolved well and the spin-down luminosity obtained in the steady state is in good agreement with the value given by Spitkovsky.

  5. A DFFD simulation method combined with the spectral element method for solid-fluid-interaction problems

    NASA Astrophysics Data System (ADS)

    Chen, Li-Chieh; Huang, Mei-Jiau

    2017-02-01

    A 2D simulation method for a rigid body moving in an incompressible viscous fluid is proposed. It combines one of the immersed-boundary methods, the DFFD (direct forcing fictitious domain) method with the spectral element method; the former is employed for efficiently capturing the two-way FSI (fluid-structure interaction) and the geometric flexibility of the latter is utilized for any possibly co-existing stationary and complicated solid or flow boundary. A pseudo body force is imposed within the solid domain to enforce the rigid body motion and a Lagrangian mesh composed of triangular elements is employed for tracing the rigid body. In particular, a so called sub-cell scheme is proposed to smooth the discontinuity at the fluid-solid interface and to execute integrations involving Eulerian variables over the moving-solid domain. The accuracy of the proposed method is verified through an observed agreement of the simulation results of some typical flows with analytical solutions or existing literatures.

  6. A polychromatic adaption of the Beer-Lambert model for spectral decomposition

    NASA Astrophysics Data System (ADS)

    Sellerer, Thorsten; Ehn, Sebastian; Mechlem, Korbinian; Pfeiffer, Franz; Herzen, Julia; Noël, Peter B.

    2017-03-01

    We present a semi-empirical forward-model for spectral photon-counting CT which is fully compatible with state-of-the-art maximum-likelihood estimators (MLE) for basis material line integrals. The model relies on a minimum calibration effort to make the method applicable in routine clinical set-ups with the need for periodic re-calibration. In this work we present an experimental verifcation of our proposed method. The proposed method uses an adapted Beer-Lambert model, describing the energy dependent attenuation of a polychromatic x-ray spectrum using additional exponential terms. In an experimental dual-energy photon-counting CT setup based on a CdTe detector, the model demonstrates an accurate prediction of the registered counts for an attenuated polychromatic spectrum. Thereby deviations between model and measurement data lie within the Poisson statistical limit of the performed acquisitions, providing an effectively unbiased forward-model. The experimental data also shows that the model is capable of handling possible spectral distortions introduced by the photon-counting detector and CdTe sensor. The simplicity and high accuracy of the proposed model provides a viable forward-model for MLE-based spectral decomposition methods without the need of costly and time-consuming characterization of the system response.

  7. Pseudo-spectral control of a novel oscillating surge wave energy converter in regular waves for power optimization including load reduction

    DOE PAGES

    Tom, Nathan M.; Yu, Yi -Hsiang; Wright, Alan D.; ...

    2017-04-18

    The aim of this study is to describe a procedure to maximize the power-to-load ratio of a novel wave energy converter (WEC) that combines an oscillating surge wave energy converter with variable structural components. The control of the power-take-off torque will be on a wave-to-wave timescale, whereas the structure will be controlled statically such that the geometry remains the same throughout the wave period. Linear hydrodynamic theory is used to calculate the upper and lower bounds for the time-averaged absorbed power and surge foundation loads while assuming that the WEC motion remains sinusoidal. Previous work using pseudo-spectral techniques to solvemore » the optimal control problem focused solely on maximizing absorbed energy. This work extends the optimal control problem to include a measure of the surge foundation force in the optimization. The objective function includes two competing terms that force the optimizer to maximize power capture while minimizing structural loads. A penalty weight was included with the surge foundation force that allows control of the optimizer performance based on whether emphasis should be placed on power absorption or load shedding. Results from pseudo-spectral optimal control indicate that a unit reduction in time-averaged power can be accompanied by a greater reduction in surge-foundation force.« less

  8. Pseudo-spectral control of a novel oscillating surge wave energy converter in regular waves for power optimization including load reduction

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Tom, Nathan M.; Yu, Yi -Hsiang; Wright, Alan D.

    The aim of this study is to describe a procedure to maximize the power-to-load ratio of a novel wave energy converter (WEC) that combines an oscillating surge wave energy converter with variable structural components. The control of the power-take-off torque will be on a wave-to-wave timescale, whereas the structure will be controlled statically such that the geometry remains the same throughout the wave period. Linear hydrodynamic theory is used to calculate the upper and lower bounds for the time-averaged absorbed power and surge foundation loads while assuming that the WEC motion remains sinusoidal. Previous work using pseudo-spectral techniques to solvemore » the optimal control problem focused solely on maximizing absorbed energy. This work extends the optimal control problem to include a measure of the surge foundation force in the optimization. The objective function includes two competing terms that force the optimizer to maximize power capture while minimizing structural loads. A penalty weight was included with the surge foundation force that allows control of the optimizer performance based on whether emphasis should be placed on power absorption or load shedding. Results from pseudo-spectral optimal control indicate that a unit reduction in time-averaged power can be accompanied by a greater reduction in surge-foundation force.« less

  9. A numerical study of adaptive space and time discretisations for Gross–Pitaevskii equations

    PubMed Central

    Thalhammer, Mechthild; Abhau, Jochen

    2012-01-01

    As a basic principle, benefits of adaptive discretisations are an improved balance between required accuracy and efficiency as well as an enhancement of the reliability of numerical computations. In this work, the capacity of locally adaptive space and time discretisations for the numerical solution of low-dimensional nonlinear Schrödinger equations is investigated. The considered model equation is related to the time-dependent Gross–Pitaevskii equation arising in the description of Bose–Einstein condensates in dilute gases. The performance of the Fourier-pseudo spectral method constrained to uniform meshes versus the locally adaptive finite element method and of higher-order exponential operator splitting methods with variable time stepsizes is studied. Numerical experiments confirm that a local time stepsize control based on a posteriori local error estimators or embedded splitting pairs, respectively, is effective in different situations with an enhancement either in efficiency or reliability. As expected, adaptive time-splitting schemes combined with fast Fourier transform techniques are favourable regarding accuracy and efficiency when applied to Gross–Pitaevskii equations with a defocusing nonlinearity and a mildly varying regular solution. However, the numerical solution of nonlinear Schrödinger equations in the semi-classical regime becomes a demanding task. Due to the highly oscillatory and nonlinear nature of the problem, the spatial mesh size and the time increments need to be of the size of the decisive parameter 0<ε≪1, especially when it is desired to capture correctly the quantitative behaviour of the wave function itself. The required high resolution in space constricts the feasibility of numerical computations for both, the Fourier pseudo-spectral and the finite element method. Nevertheless, for smaller parameter values locally adaptive time discretisations facilitate to determine the time stepsizes sufficiently small in order that the

  10. A numerical study of adaptive space and time discretisations for Gross-Pitaevskii equations.

    PubMed

    Thalhammer, Mechthild; Abhau, Jochen

    2012-08-15

    As a basic principle, benefits of adaptive discretisations are an improved balance between required accuracy and efficiency as well as an enhancement of the reliability of numerical computations. In this work, the capacity of locally adaptive space and time discretisations for the numerical solution of low-dimensional nonlinear Schrödinger equations is investigated. The considered model equation is related to the time-dependent Gross-Pitaevskii equation arising in the description of Bose-Einstein condensates in dilute gases. The performance of the Fourier-pseudo spectral method constrained to uniform meshes versus the locally adaptive finite element method and of higher-order exponential operator splitting methods with variable time stepsizes is studied. Numerical experiments confirm that a local time stepsize control based on a posteriori local error estimators or embedded splitting pairs, respectively, is effective in different situations with an enhancement either in efficiency or reliability. As expected, adaptive time-splitting schemes combined with fast Fourier transform techniques are favourable regarding accuracy and efficiency when applied to Gross-Pitaevskii equations with a defocusing nonlinearity and a mildly varying regular solution. However, the numerical solution of nonlinear Schrödinger equations in the semi-classical regime becomes a demanding task. Due to the highly oscillatory and nonlinear nature of the problem, the spatial mesh size and the time increments need to be of the size of the decisive parameter [Formula: see text], especially when it is desired to capture correctly the quantitative behaviour of the wave function itself. The required high resolution in space constricts the feasibility of numerical computations for both, the Fourier pseudo-spectral and the finite element method. Nevertheless, for smaller parameter values locally adaptive time discretisations facilitate to determine the time stepsizes sufficiently small in order that

  11. Spectral collocation methods

    NASA Technical Reports Server (NTRS)

    Hussaini, M. Y.; Kopriva, D. A.; Patera, A. T.

    1987-01-01

    This review covers the theory and application of spectral collocation methods. Section 1 describes the fundamentals, and summarizes results pertaining to spectral approximations of functions. Some stability and convergence results are presented for simple elliptic, parabolic, and hyperbolic equations. Applications of these methods to fluid dynamics problems are discussed in Section 2.

  12. Spectral methods for CFD

    NASA Technical Reports Server (NTRS)

    Zang, Thomas A.; Streett, Craig L.; Hussaini, M. Yousuff

    1989-01-01

    One of the objectives of these notes is to provide a basic introduction to spectral methods with a particular emphasis on applications to computational fluid dynamics. Another objective is to summarize some of the most important developments in spectral methods in the last two years. The fundamentals of spectral methods for simple problems will be covered in depth, and the essential elements of several fluid dynamical applications will be sketched.

  13. A robust bi-orthogonal/dynamically-orthogonal method using the covariance pseudo-inverse with application to stochastic flow problems

    NASA Astrophysics Data System (ADS)

    Babaee, Hessam; Choi, Minseok; Sapsis, Themistoklis P.; Karniadakis, George Em

    2017-09-01

    We develop a new robust methodology for the stochastic Navier-Stokes equations based on the dynamically-orthogonal (DO) and bi-orthogonal (BO) methods [1-3]. Both approaches are variants of a generalized Karhunen-Loève (KL) expansion in which both the stochastic coefficients and the spatial basis evolve according to system dynamics, hence, capturing the low-dimensional structure of the solution. The DO and BO formulations are mathematically equivalent [3], but they exhibit computationally complimentary properties. Specifically, the BO formulation may fail due to crossing of the eigenvalues of the covariance matrix, while both BO and DO become unstable when there is a high condition number of the covariance matrix or zero eigenvalues. To this end, we combine the two methods into a robust hybrid framework and in addition we employ a pseudo-inverse technique to invert the covariance matrix. The robustness of the proposed method stems from addressing the following issues in the DO/BO formulation: (i) eigenvalue crossing: we resolve the issue of eigenvalue crossing in the BO formulation by switching to the DO near eigenvalue crossing using the equivalence theorem and switching back to BO when the distance between eigenvalues is larger than a threshold value; (ii) ill-conditioned covariance matrix: we utilize a pseudo-inverse strategy to invert the covariance matrix; (iii) adaptivity: we utilize an adaptive strategy to add/remove modes to resolve the covariance matrix up to a threshold value. In particular, we introduce a soft-threshold criterion to allow the system to adapt to the newly added/removed mode and therefore avoid repetitive and unnecessary mode addition/removal. When the total variance approaches zero, we show that the DO/BO formulation becomes equivalent to the evolution equation of the Optimally Time-Dependent modes [4]. We demonstrate the capability of the proposed methodology with several numerical examples, namely (i) stochastic Burgers equation: we

  14. Pseudo-compressibility methods for the incompressible flow equations

    NASA Technical Reports Server (NTRS)

    Turkel, Eli; Arnone, A.

    1993-01-01

    Preconditioning methods to accelerate convergence to a steady state for the incompressible fluid dynamics equations are considered. The analysis relies on the inviscid equations. The preconditioning consists of a matrix multiplying the time derivatives. Thus the steady state of the preconditioned system is the same as the steady state of the original system. The method is compared to other types of pseudo-compressibility. For finite difference methods preconditioning can change and improve the steady state solutions. An application to viscous flow around a cascade with a non-periodic mesh is presented.

  15. A review of spectral methods

    NASA Technical Reports Server (NTRS)

    Lustman, L.

    1984-01-01

    An outline for spectral methods for partial differential equations is presented. The basic spectral algorithm is defined, collocation are emphasized and the main advantage of the method, the infinite order of accuracy in problems with smooth solutions are discussed. Examples of theoretical numerical analysis of spectral calculations are presented. An application of spectral methods to transonic flow is presented. The full potential transonic equation is among the best understood among nonlinear equations.

  16. A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations

    NASA Astrophysics Data System (ADS)

    Reboux, Sylvain; Schrader, Birte; Sbalzarini, Ivo F.

    2012-05-01

    We present a novel adaptive-resolution particle method for continuous parabolic problems. In this method, particles self-organize in order to adapt to local resolution requirements. This is achieved by pseudo forces that are designed so as to guarantee that the solution is always well sampled and that no holes or clusters develop in the particle distribution. The particle sizes are locally adapted to the length scale of the solution. Differential operators are consistently evaluated on the evolving set of irregularly distributed particles of varying sizes using discretization-corrected operators. The method does not rely on any global transforms or mapping functions. After presenting the method and its error analysis, we demonstrate its capabilities and limitations on a set of two- and three-dimensional benchmark problems. These include advection-diffusion, the Burgers equation, the Buckley-Leverett five-spot problem, and curvature-driven level-set surface refinement.

  17. Semi-classical analysis and pseudo-spectra

    NASA Astrophysics Data System (ADS)

    Davies, E. B.

    We prove an approximate spectral theorem for non-self-adjoint operators and investigate its applications to second-order differential operators in the semi-classical limit. This leads to the construction of a twisted FBI transform. We also investigate the connections between pseudo-spectra and boundary conditions in the semi-classical limit.

  18. The theory of pseudo-differential operators on the noncommutative n-torus

    NASA Astrophysics Data System (ADS)

    Tao, J.

    2018-02-01

    The methods of spectral geometry are useful for investigating the metric aspects of noncommutative geometry and in these contexts require extensive use of pseudo-differential operators. In a foundational paper, Connes showed that, by direct analogy with the theory of pseudo-differential operators on finite-dimensional real vector spaces, one may derive a similar pseudo-differential calculus on noncommutative n-tori, and with the development of this calculus came many results concerning the local differential geometry of noncommutative tori for n=2,4, as shown in the groundbreaking paper in which the Gauss-Bonnet theorem on the noncommutative two-torus is proved and later papers. Certain details of the proofs in the original derivation of the calculus were omitted, such as the evaluation of oscillatory integrals, so we make it the objective of this paper to fill in all the details. After reproving in more detail the formula for the symbol of the adjoint of a pseudo-differential operator and the formula for the symbol of a product of two pseudo-differential operators, we extend these results to finitely generated projective right modules over the noncommutative n-torus. Then we define the corresponding analog of Sobolev spaces and prove equivalents of the Sobolev and Rellich lemmas.

  19. Method of multivariate spectral analysis

    DOEpatents

    Keenan, Michael R.; Kotula, Paul G.

    2004-01-06

    A method of determining the properties of a sample from measured spectral data collected from the sample by performing a multivariate spectral analysis. The method can include: generating a two-dimensional matrix A containing measured spectral data; providing a weighted spectral data matrix D by performing a weighting operation on matrix A; factoring D into the product of two matrices, C and S.sup.T, by performing a constrained alternating least-squares analysis of D=CS.sup.T, where C is a concentration intensity matrix and S is a spectral shapes matrix; unweighting C and S by applying the inverse of the weighting used previously; and determining the properties of the sample by inspecting C and S. This method can be used to analyze X-ray spectral data generated by operating a Scanning Electron Microscope (SEM) with an attached Energy Dispersive Spectrometer (EDS).

  20. Investigation of the spectral reflectance and bidirectional reflectance distribution function of sea foam layer by the Monte Carlo method.

    PubMed

    Ma, L X; Wang, F Q; Wang, C A; Wang, C C; Tan, J Y

    2015-11-20

    Spectral properties of sea foam greatly affect ocean color remote sensing and aerosol optical thickness retrieval from satellite observation. This paper presents a combined Mie theory and Monte Carlo method to investigate visible and near-infrared spectral reflectance and bidirectional reflectance distribution function (BRDF) of sea foam layers. A three-layer model of the sea foam is developed in which each layer is composed of large air bubbles coated with pure water. A pseudo-continuous model and Mie theory for coated spheres is used to determine the effective radiative properties of sea foam. The one-dimensional Cox-Munk surface roughness model is used to calculate the slope density functions of the wind-blown ocean surface. A Monte Carlo method is used to solve the radiative transfer equation. Effects of foam layer thickness, bubble size, wind speed, solar zenith angle, and wavelength on the spectral reflectance and BRDF are investigated. Comparisons between previous theoretical results and experimental data demonstrate the feasibility of our proposed method. Sea foam can significantly increase the spectral reflectance and BRDF of the sea surface. The absorption coefficient of seawater near the surface is not the only parameter that influences the spectral reflectance. Meanwhile, the effects of bubble size, foam layer thickness, and solar zenith angle also cannot be obviously neglected.

  1. An adaptive demodulation approach for bearing fault detection based on adaptive wavelet filtering and spectral subtraction

    NASA Astrophysics Data System (ADS)

    Zhang, Yan; Tang, Baoping; Liu, Ziran; Chen, Rengxiang

    2016-02-01

    Fault diagnosis of rolling element bearings is important for improving mechanical system reliability and performance. Vibration signals contain a wealth of complex information useful for state monitoring and fault diagnosis. However, any fault-related impulses in the original signal are often severely tainted by various noises and the interfering vibrations caused by other machine elements. Narrow-band amplitude demodulation has been an effective technique to detect bearing faults by identifying bearing fault characteristic frequencies. To achieve this, the key step is to remove the corrupting noise and interference, and to enhance the weak signatures of the bearing fault. In this paper, a new method based on adaptive wavelet filtering and spectral subtraction is proposed for fault diagnosis in bearings. First, to eliminate the frequency associated with interfering vibrations, the vibration signal is bandpass filtered with a Morlet wavelet filter whose parameters (i.e. center frequency and bandwidth) are selected in separate steps. An alternative and efficient method of determining the center frequency is proposed that utilizes the statistical information contained in the production functions (PFs). The bandwidth parameter is optimized using a local ‘greedy’ scheme along with Shannon wavelet entropy criterion. Then, to further reduce the residual in-band noise in the filtered signal, a spectral subtraction procedure is elaborated after wavelet filtering. Instead of resorting to a reference signal as in the majority of papers in the literature, the new method estimates the power spectral density of the in-band noise from the associated PF. The effectiveness of the proposed method is validated using simulated data, test rig data, and vibration data recorded from the transmission system of a helicopter. The experimental results and comparisons with other methods indicate that the proposed method is an effective approach to detecting the fault-related impulses

  2. Super-resolution Doppler beam sharpening method using fast iterative adaptive approach-based spectral estimation

    NASA Astrophysics Data System (ADS)

    Mao, Deqing; Zhang, Yin; Zhang, Yongchao; Huang, Yulin; Yang, Jianyu

    2018-01-01

    Doppler beam sharpening (DBS) is a critical technology for airborne radar ground mapping in forward-squint region. In conventional DBS technology, the narrow-band Doppler filter groups formed by fast Fourier transform (FFT) method suffer from low spectral resolution and high side lobe levels. The iterative adaptive approach (IAA), based on the weighted least squares (WLS), is applied to the DBS imaging applications, forming narrower Doppler filter groups than the FFT with lower side lobe levels. Regrettably, the IAA is iterative, and requires matrix multiplication and inverse operation when forming the covariance matrix, its inverse and traversing the WLS estimate for each sampling point, resulting in a notably high computational complexity for cubic time. We propose a fast IAA (FIAA)-based super-resolution DBS imaging method, taking advantage of the rich matrix structures of the classical narrow-band filtering. First, we formulate the covariance matrix via the FFT instead of the conventional matrix multiplication operation, based on the typical Fourier structure of the steering matrix. Then, by exploiting the Gohberg-Semencul representation, the inverse of the Toeplitz covariance matrix is computed by the celebrated Levinson-Durbin (LD) and Toeplitz-vector algorithm. Finally, the FFT and fast Toeplitz-vector algorithm are further used to traverse the WLS estimates based on the data-dependent trigonometric polynomials. The method uses the Hermitian feature of the echo autocorrelation matrix R to achieve its fast solution and uses the Toeplitz structure of R to realize its fast inversion. The proposed method enjoys a lower computational complexity without performance loss compared with the conventional IAA-based super-resolution DBS imaging method. The results based on simulations and measured data verify the imaging performance and the operational efficiency.

  3. An adaptive angle-doppler compensation method for airborne bistatic radar based on PAST

    NASA Astrophysics Data System (ADS)

    Hang, Xu; Jun, Zhao

    2018-05-01

    Adaptive angle-Doppler compensation method extract the requisite information based on the data itself adaptively, thus avoiding the problem of performance degradation caused by inertia system error. However, this method requires estimation and egiendecomposition of sample covariance matrix, which has a high computational complexity and limits its real-time application. In this paper, an adaptive angle Doppler compensation method based on projection approximation subspace tracking (PAST) is studied. The method uses cyclic iterative processing to quickly estimate the positions of the spectral center of the maximum eigenvector of each range cell, and the computational burden of matrix estimation and eigen-decompositon is avoided, and then the spectral centers of all range cells is overlapped by two dimensional compensation. Simulation results show the proposed method can effectively reduce the no homogeneity of airborne bistatic radar, and its performance is similar to that of egien-decomposition algorithms, but the computation load is obviously reduced and easy to be realized.

  4. A proposed mechanism for rapid adaptation to spectrally distorted speech.

    PubMed

    Azadpour, Mahan; Balaban, Evan

    2015-07-01

    The mechanisms underlying perceptual adaptation to severely spectrally-distorted speech were studied by training participants to comprehend spectrally-rotated speech, which is obtained by inverting the speech spectrum. Spectral-rotation produces severe distortion confined to the spectral domain while preserving temporal trajectories. During five 1-hour training sessions, pairs of participants attempted to extract spoken messages from the spectrally-rotated speech of their training partner. Data on training-induced changes in comprehension of spectrally-rotated sentences and identification/discrimination of spectrally-rotated phonemes were used to evaluate the plausibility of three different classes of underlying perceptual mechanisms: (1) phonemic remapping (the formation of new phonemic categories that specifically incorporate spectrally-rotated acoustic information); (2) experience-dependent generation of a perceptual "inverse-transform" that compensates for spectral-rotation; and (3) changes in cue weighting (the identification of sets of acoustic cues least affected by spectral-rotation, followed by a rapid shift in perceptual emphasis to favour those cues, combined with the recruitment of the same type of "perceptual filling-in" mechanisms used to disambiguate speech-in-noise). Results exclusively support the third mechanism, which is the only one predicting that learning would specifically target temporally-dynamic cues that were transmitting phonetic information most stably in spite of spectral-distortion. No support was found for phonemic remapping or for inverse-transform generation.

  5. A Remote Sensing Image Fusion Method based on adaptive dictionary learning

    NASA Astrophysics Data System (ADS)

    He, Tongdi; Che, Zongxi

    2018-01-01

    This paper discusses using a remote sensing fusion method, based on' adaptive sparse representation (ASP)', to provide improved spectral information, reduce data redundancy and decrease system complexity. First, the training sample set is formed by taking random blocks from the images to be fused, the dictionary is then constructed using the training samples, and the remaining terms are clustered to obtain the complete dictionary by iterated processing at each step. Second, the self-adaptive weighted coefficient rule of regional energy is used to select the feature fusion coefficients and complete the reconstruction of the image blocks. Finally, the reconstructed image blocks are rearranged and an average is taken to obtain the final fused images. Experimental results show that the proposed method is superior to other traditional remote sensing image fusion methods in both spectral information preservation and spatial resolution.

  6. Implicit LES using adaptive filtering

    NASA Astrophysics Data System (ADS)

    Sun, Guangrui; Domaradzki, Julian A.

    2018-04-01

    In implicit large eddy simulations (ILES) numerical dissipation prevents buildup of small scale energy in a manner similar to the explicit subgrid scale (SGS) models. If spectral methods are used the numerical dissipation is negligible but it can be introduced by applying a low-pass filter in the physical space, resulting in an effective ILES. In the present work we provide a comprehensive analysis of the numerical dissipation produced by different filtering operations in a turbulent channel flow simulated using a non-dissipative, pseudo-spectral Navier-Stokes solver. The amount of numerical dissipation imparted by filtering can be easily adjusted by changing how often a filter is applied. We show that when the additional numerical dissipation is close to the subgrid-scale (SGS) dissipation of an explicit LES the overall accuracy of ILES is also comparable, indicating that periodic filtering can replace explicit SGS models. A new method is proposed, which does not require any prior knowledge of a flow, to determine the filtering period adaptively. Once an optimal filtering period is found, the accuracy of ILES is significantly improved at low implementation complexity and computational cost. The method is general, performing well for different Reynolds numbers, grid resolutions, and filter shapes.

  7. Application of adaptive gridding to magnetohydrodynamic flows

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Schnack, D.D.; Lotatti, I.; Satyanarayana, P.

    1996-12-31

    The numerical simulation of the primitive, three-dimensional, time-dependent, resistive MHD equations on an unstructured, adaptive poloidal mesh using the TRIM code has been reported previously. The toroidal coordinate is approximated pseudo-spectrally with finite Fourier series and Fast-Fourier Transforms. The finite-volume algorithm preserves the magnetic field as solenoidal to round-off error, and also conserves mass, energy, and magnetic flux exactly. A semi-implicit method is used to allow for large time steps on the unstructured mesh. This is important for tokamak calculations where the relevant time scale is determined by the poloidal Alfven time. This also allows the viscosity to be treatedmore » implicitly. A conjugate-gradient method with pre-conditioning is used for matrix inversion. Applications to the growth and saturation of ideal instabilities in several toroidal fusion systems has been demonstrated. Recently we have concentrated on the details of the mesh adaption algorithm used in TRIM. We present several two-dimensional results relating to the use of grid adaptivity to track the evolution of hydrodynamic and MHD structures. Examples of plasma guns, opening switches, and supersonic flow over a magnetized sphere are presented. Issues relating to mesh adaption criteria are discussed.« less

  8. Spectral methods on arbitrary grids

    NASA Technical Reports Server (NTRS)

    Carpenter, Mark H.; Gottlieb, David

    1995-01-01

    Stable and spectrally accurate numerical methods are constructed on arbitrary grids for partial differential equations. These new methods are equivalent to conventional spectral methods but do not rely on specific grid distributions. Specifically, we show how to implement Legendre Galerkin, Legendre collocation, and Laguerre Galerkin methodology on arbitrary grids.

  9. Pseudo-second order models for the adsorption of safranin onto activated carbon: comparison of linear and non-linear regression methods.

    PubMed

    Kumar, K Vasanth

    2007-04-02

    Kinetic experiments were carried out for the sorption of safranin onto activated carbon particles. The kinetic data were fitted to pseudo-second order model of Ho, Sobkowsk and Czerwinski, Blanchard et al. and Ritchie by linear and non-linear regression methods. Non-linear method was found to be a better way of obtaining the parameters involved in the second order rate kinetic expressions. Both linear and non-linear regression showed that the Sobkowsk and Czerwinski and Ritchie's pseudo-second order models were the same. Non-linear regression analysis showed that both Blanchard et al. and Ho have similar ideas on the pseudo-second order model but with different assumptions. The best fit of experimental data in Ho's pseudo-second order expression by linear and non-linear regression method showed that Ho pseudo-second order model was a better kinetic expression when compared to other pseudo-second order kinetic expressions.

  10. Adaptive handling of Rayleigh and Raman scatter of fluorescence data based on evaluation of the degree of spectral overlap

    NASA Astrophysics Data System (ADS)

    Hu, Yingtian; Liu, Chao; Wang, Xiaoping; Zhao, Dongdong

    2018-06-01

    At present the general scatter handling methods are unsatisfactory when scatter and fluorescence seriously overlap in excitation emission matrix. In this study, an adaptive method for scatter handling of fluorescence data is proposed. Firstly, the Raman scatter was corrected by subtracting the baseline of deionized water which was collected in each experiment to adapt to the intensity fluctuations. Then, the degrees of spectral overlap between Rayleigh scatter and fluorescence were classified into three categories based on the distance between the spectral peaks. The corresponding algorithms, including setting to zero, fitting on single or both sides, were implemented after the evaluation of the degree of overlap for individual emission spectra. The proposed method minimized the number of fitting and interpolation processes, which reduced complexity, saved time, avoided overfitting, and most importantly assured the authenticity of data. Furthermore, the effectiveness of this procedure on the subsequent PARAFAC analysis was assessed and compared to Delaunay interpolation by conducting experiments with four typical organic chemicals and real water samples. Using this method, we conducted long-term monitoring of tap water and river water near a dyeing and printing plant. This method can be used for improving adaptability and accuracy in the scatter handling of fluorescence data.

  11. Significance of parametric spectral ratio methods in detection and recognition of whispered speech

    NASA Astrophysics Data System (ADS)

    Mathur, Arpit; Reddy, Shankar M.; Hegde, Rajesh M.

    2012-12-01

    In this article the significance of a new parametric spectral ratio method that can be used to detect whispered speech segments within normally phonated speech is described. Adaptation methods based on the maximum likelihood linear regression (MLLR) are then used to realize a mismatched train-test style speech recognition system. This proposed parametric spectral ratio method computes a ratio spectrum of the linear prediction (LP) and the minimum variance distortion-less response (MVDR) methods. The smoothed ratio spectrum is then used to detect whispered segments of speech within neutral speech segments effectively. The proposed LP-MVDR ratio method exhibits robustness at different SNRs as indicated by the whisper diarization experiments conducted on the CHAINS and the cell phone whispered speech corpus. The proposed method also performs reasonably better than the conventional methods for whisper detection. In order to integrate the proposed whisper detection method into a conventional speech recognition engine with minimal changes, adaptation methods based on the MLLR are used herein. The hidden Markov models corresponding to neutral mode speech are adapted to the whispered mode speech data in the whispered regions as detected by the proposed ratio method. The performance of this method is first evaluated on whispered speech data from the CHAINS corpus. The second set of experiments are conducted on the cell phone corpus of whispered speech. This corpus is collected using a set up that is used commercially for handling public transactions. The proposed whisper speech recognition system exhibits reasonably better performance when compared to several conventional methods. The results shown indicate the possibility of a whispered speech recognition system for cell phone based transactions.

  12. INSTRUMENTS AND METHODS OF INVESTIGATION: Spectral and spectral-frequency methods of investigating atmosphereless bodies of the Solar system

    NASA Astrophysics Data System (ADS)

    Busarev, Vladimir V.; Prokof'eva-Mikhailovskaya, Valentina V.; Bochkov, Valerii V.

    2007-06-01

    A method of reflectance spectrophotometry of atmosphereless bodies of the Solar system, its specificity, and the means of eliminating basic spectral noise are considered. As a development, joining the method of reflectance spectrophotometry with the frequency analysis of observational data series is proposed. The combined spectral-frequency method allows identification of formations with distinctive spectral features, and estimations of their sizes and distribution on the surface of atmospherelss celestial bodies. As applied to investigations of asteroids 21 Lutetia and 4 Vesta, the spectral frequency method has given us the possibility of obtaining fundamentally new information about minor planets.

  13. Efficient integration of spectral features for vehicle tracking utilizing an adaptive sensor

    NASA Astrophysics Data System (ADS)

    Uzkent, Burak; Hoffman, Matthew J.; Vodacek, Anthony

    2015-03-01

    Object tracking in urban environments is an important and challenging problem that is traditionally tackled using visible and near infrared wavelengths. By inserting extended data such as spectral features of the objects one can improve the reliability of the identification process. However, huge increase in data created by hyperspectral imaging is usually prohibitive. To overcome the complexity problem, we propose a persistent air-to-ground target tracking system inspired by a state-of-the-art, adaptive, multi-modal sensor. The adaptive sensor is capable of providing panchromatic images as well as the spectra of desired pixels. This addresses the data challenge of hyperspectral tracking by only recording spectral data as needed. Spectral likelihoods are integrated into a data association algorithm in a Bayesian fashion to minimize the likelihood of misidentification. A framework for controlling spectral data collection is developed by incorporating motion segmentation information and prior information from a Gaussian Sum filter (GSF) movement predictions from a multi-model forecasting set. An intersection mask of the surveillance area is extracted from OpenStreetMap source and incorporated into the tracking algorithm to perform online refinement of multiple model set. The proposed system is tested using challenging and realistic scenarios generated in an adverse environment.

  14. Applications of the Lattice Boltzmann Method to Complex and Turbulent Flows

    NASA Technical Reports Server (NTRS)

    Luo, Li-Shi; Qi, Dewei; Wang, Lian-Ping; Bushnell, Dennis M. (Technical Monitor)

    2002-01-01

    We briefly review the method of the lattice Boltzmann equation (LBE). We show the three-dimensional LBE simulation results for a non-spherical particle in Couette flow and 16 particles in sedimentation in fluid. We compare the LBE simulation of the three-dimensional homogeneous isotropic turbulence flow in a periodic cubic box of the size 1283 with the pseudo-spectral simulation, and find that the two results agree well with each other but the LBE method is more dissipative than the pseudo-spectral method in small scales, as expected.

  15. Hybrid least squares multivariate spectral analysis methods

    DOEpatents

    Haaland, David M.

    2004-03-23

    A set of hybrid least squares multivariate spectral analysis methods in which spectral shapes of components or effects not present in the original calibration step are added in a following prediction or calibration step to improve the accuracy of the estimation of the amount of the original components in the sampled mixture. The hybrid method herein means a combination of an initial calibration step with subsequent analysis by an inverse multivariate analysis method. A spectral shape herein means normally the spectral shape of a non-calibrated chemical component in the sample mixture but can also mean the spectral shapes of other sources of spectral variation, including temperature drift, shifts between spectrometers, spectrometer drift, etc. The shape can be continuous, discontinuous, or even discrete points illustrative of the particular effect.

  16. Hybrid least squares multivariate spectral analysis methods

    DOEpatents

    Haaland, David M.

    2002-01-01

    A set of hybrid least squares multivariate spectral analysis methods in which spectral shapes of components or effects not present in the original calibration step are added in a following estimation or calibration step to improve the accuracy of the estimation of the amount of the original components in the sampled mixture. The "hybrid" method herein means a combination of an initial classical least squares analysis calibration step with subsequent analysis by an inverse multivariate analysis method. A "spectral shape" herein means normally the spectral shape of a non-calibrated chemical component in the sample mixture but can also mean the spectral shapes of other sources of spectral variation, including temperature drift, shifts between spectrometers, spectrometer drift, etc. The "shape" can be continuous, discontinuous, or even discrete points illustrative of the particular effect.

  17. Damage Based Analysis (DBA) - Theory, Derivation and Practical Application Using Both an Acceleration and Pseudo Velocity Approach

    NASA Technical Reports Server (NTRS)

    Grillo, Vince

    2017-01-01

    The objective of this presentation is to give a brief overview of the theory behind the (DBA) method, an overview of the derivation and a practical application of the theory using the Python computer language. The Theory and Derivation will use both Acceleration and Pseudo Velocity methods to derive a series of equations for processing by Python. We will take the results and compare both Acceleration and Pseudo Velocity methods and discuss implementation of the Python functions. Also, we will discuss the efficiency of the methods and the amount of computer time required for the solution. In conclusion, (DBA) offers a powerful method to evaluate the amount of energy imparted into a system in the form of both Amplitude and Duration during qualification testing and flight environments. Many forms of steady state and transient vibratory motion can be characterized using this technique. (DBA) provides a more robust alternative to traditional methods such Power Spectral Density (PSD) using a maximax approach.

  18. Damage Based Analysis (DBA): Theory, Derivation and Practical Application - Using Both an Acceleration and Pseudo-Velocity Approach

    NASA Technical Reports Server (NTRS)

    Grillo, Vince

    2016-01-01

    The objective of this presentation is to give a brief overview of the theory behind the (DBA) method, an overview of the derivation and a practical application of the theory using the Python computer language. The Theory and Derivation will use both Acceleration and Pseudo Velocity methods to derive a series of equations for processing by Python. We will take the results and compare both Acceleration and Pseudo Velocity methods and discuss implementation of the Python functions. Also, we will discuss the efficiency of the methods and the amount of computer time required for the solution. In conclusion, (DBA) offers a powerful method to evaluate the amount of energy imparted into a system in the form of both Amplitude and Duration during qualification testing and flight environments. Many forms of steady state and transient vibratory motion can be characterized using this technique. (DBA) provides a more robust alternative to traditional methods such Power Spectral Density (PSD) using a Maximax approach.

  19. Division by zero, pseudo-division by zero, Zhang dynamics method and Zhang-gradient method about control singularity conquering

    NASA Astrophysics Data System (ADS)

    Zhang, Yunong; Zhang, Yinyan; Chen, Dechao; Xiao, Zhengli; Yan, Xiaogang

    2017-01-01

    In this paper, the division-by-zero (DBO) problem in the field of nonlinear control, which is traditionally termed the control singularity problem (or specifically, controller singularity problem), is investigated by the Zhang dynamics (ZD) method and the Zhang-gradient (ZG) method. According to the impact of the DBO problem on the state variables of the controlled nonlinear system, the concepts of the pseudo-DBO problem and the true-DBO problem are proposed in this paper, which provide a new perspective for the researchers on the DBO problems as well as nonlinear control systems. Besides, the two classes of DBO problems are solved under the framework of the ZG method. Specific examples are shown and investigated in this paper to illustrate the two proposed concepts and the efficacy of the ZG method in conquering pseudo-DBO and true-DBO problems. The application of the ZG method to the tracking control of a two-wheeled mobile robot further substantiates the effectiveness of the ZG method. In addition, the ZG method is successfully applied to the tracking control of a pure-feedback nonlinear system.

  20. Spectral ratio method for measuring emissivity

    USGS Publications Warehouse

    Watson, K.

    1992-01-01

    The spectral ratio method is based on the concept that although the spectral radiances are very sensitive to small changes in temperature the ratios are not. Only an approximate estimate of temperature is required thus, for example, we can determine the emissivity ratio to an accuracy of 1% with a temperature estimate that is only accurate to 12.5 K. Selecting the maximum value of the channel brightness temperatures is an unbiased estimate. Laboratory and field spectral data are easily converted into spectral ratio plots. The ratio method is limited by system signal:noise and spectral band-width. The images can appear quite noisy because ratios enhance high frequencies and may require spatial filtering. Atmospheric effects tend to rescale the ratios and require using an atmospheric model or a calibration site. ?? 1992.

  1. Methods for the quantification of pseudo-vibration sensitivities in laser vibrometry

    NASA Astrophysics Data System (ADS)

    Martin, P.; Rothberg, S. J.

    2011-03-01

    Pseudo-vibration sensitivities in laser vibrometry are the consequence of measurement noise generated by surface motions other than that on-axis with the incident laser beam(s), such as transverse and tilt vibrations or rotation. On rougher surfaces, laser speckle is the cause but similar noise is observed in measurements from smoother surfaces. This paper's principal aim is to introduce two experimental methods for quantification, including dedicated data processing, to deliver sensitivities in three forms: a spectral map, a mean level per order and a total rms level. Single and parallel beam vibrometers and different surface roughness or treatment are accommodated, with sensitivities presented for two commercial instruments (beam diameters 90 and 520 µm). For transverse sensitivity, a total rms level around 0.05% is found for the larger beam, a quarter of the level for the smaller beam. For tilt sensitivity, advantage shifts to the smaller beam with a total rms level around 0.45 µm s-1/deg s-1, less than one-third of that for the larger beam. Levels hold fairly constant across the rougher surfaces, reducing only for a polished surface. For rotation sensitivities (radial vibrations), advantage remains with the smaller beam with a total rms level around 2 µm s-1/deg s-1, compared to 5 µm s-1/deg s-1 for the larger beam, while sensitivity reduces with diminishing roughness. These sensitivities are especially valuable to vibrometer users in instrumentation selection and data analysis.

  2. Encryption method based on pseudo random spatial light modulation for single-fibre data transmission

    NASA Astrophysics Data System (ADS)

    Kowalski, Marcin; Zyczkowski, Marek

    2017-11-01

    Optical cryptosystems can provide encryption and sometimes compression simultaneously. They are increasingly attractive for information securing especially for image encryption. Our studies shown that the optical cryptosystems can be used to encrypt optical data transmission. We propose and study a new method for securing fibre data communication. The paper presents a method for optical encryption of data transmitted with a single optical fibre. The encryption process relies on pseudo-random spatial light modulation, combination of two encryption keys and the Compressed Sensing framework. A linear combination of light pulses with pseudo-random patterns provides a required encryption performance. We propose an architecture to transmit the encrypted data through the optical fibre. The paper describes the method, presents the theoretical analysis, design of physical model and results of experiment.

  3. Spectral methods for partial differential equations

    NASA Technical Reports Server (NTRS)

    Hussaini, M. Y.; Streett, C. L.; Zang, T. A.

    1983-01-01

    Origins of spectral methods, especially their relation to the Method of Weighted Residuals, are surveyed. Basic Fourier, Chebyshev, and Legendre spectral concepts are reviewed, and demonstrated through application to simple model problems. Both collocation and tau methods are considered. These techniques are then applied to a number of difficult, nonlinear problems of hyperbolic, parabolic, elliptic, and mixed type. Fluid dynamical applications are emphasized.

  4. Strain, curvature, and twist measurements in digital holographic interferometry using pseudo-Wigner-Ville distribution based method

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rajshekhar, G.; Gorthi, Sai Siva; Rastogi, Pramod

    2009-09-15

    Measurement of strain, curvature, and twist of a deformed object play an important role in deformation analysis. Strain depends on the first order displacement derivative, whereas curvature and twist are determined by second order displacement derivatives. This paper proposes a pseudo-Wigner-Ville distribution based method for measurement of strain, curvature, and twist in digital holographic interferometry where the object deformation or displacement is encoded as interference phase. In the proposed method, the phase derivative is estimated by peak detection of pseudo-Wigner-Ville distribution evaluated along each row/column of the reconstructed interference field. A complex exponential signal with unit amplitude and the phasemore » derivative estimate as the argument is then generated and the pseudo-Wigner-Ville distribution along each row/column of this signal is evaluated. The curvature is estimated by using peak tracking strategy for the new distribution. For estimation of twist, the pseudo-Wigner-Ville distribution is evaluated along each column/row (i.e., in alternate direction with respect to the previous one) for the generated complex exponential signal and the corresponding peak detection gives the twist estimate.« less

  5. Spectral Properties and Dynamics of Gold Nanorods Revealed by EMCCD Based Spectral-Phasor Method

    PubMed Central

    Chen, Hongtao; Digman, Michelle A.

    2015-01-01

    Gold nanorods (NRs) with tunable plasmon-resonant absorption in the near-infrared region have considerable advantages over organic fluorophores as imaging agents. However, the luminescence spectral properties of NRs have not been fully explored at the single particle level in bulk due to lack of proper analytic tools. Here we present a global spectral phasor analysis method which allows investigations of NRs' spectra at single particle level with their statistic behavior and spatial information during imaging. The wide phasor distribution obtained by the spectral phasor analysis indicates spectra of NRs are different from particle to particle. NRs with different spectra can be identified graphically in corresponding spatial images with high spectral resolution. Furthermore, spectral behaviors of NRs under different imaging conditions, e.g. different excitation powers and wavelengths, were carefully examined by our laser-scanning multiphoton microscope with spectral imaging capability. Our results prove that the spectral phasor method is an easy and efficient tool in hyper-spectral imaging analysis to unravel subtle changes of the emission spectrum. Moreover, we applied this method to study the spectral dynamics of NRs during direct optical trapping and by optothermal trapping. Interestingly, spectral shifts were observed in both trapping phenomena. PMID:25684346

  6. [A magnetic therapy apparatus with an adaptable electromagnetic spectrum for the treatment of prostatitis and gynecopathies].

    PubMed

    Kuz'min, A A; Meshkovskiĭ, D V; Filist, S A

    2008-01-01

    Problems of engineering and algorithm development of magnetic therapy apparatuses with pseudo-random radiation spectrum within the audio range for treatment of prostatitis and gynecopathies are considered. A typical design based on a PIC 16F microcontroller is suggested. It includes a keyboard, LCD indicator, audio amplifier, inducer, and software units. The problem of pseudo-random signal generation within the audio range is considered. A series of rectangular pulses is generated on a random-length interval on the basis of a three-component random vector. This series provides the required spectral characteristics of the therapeutic magnetic field and their adaptation to the therapeutic conditions and individual features of the patient.

  7. Simultaneous Spectral Temporal Adaptive Raman Spectrometer - SSTARS

    NASA Technical Reports Server (NTRS)

    Blacksberg, Jordana

    2010-01-01

    Raman spectroscopy is a prime candidate for the next generation of planetary instruments, as it addresses the primary goal of mineralogical analysis, which is structure and composition. However, large fluorescence return from many mineral samples under visible light excitation can render Raman spectra unattainable. Using the described approach, Raman and fluorescence, which occur on different time scales, can be simultaneously obtained from mineral samples using a compact instrument in a planetary environment. This new approach is taken based on the use of time-resolved spectroscopy for removing the fluorescence background from Raman spectra in the laboratory. In the SSTARS instrument, a visible excitation source (a green, pulsed laser) is used to generate Raman and fluorescence signals in a mineral sample. A spectral notch filter eliminates the directly reflected beam. A grating then disperses the signal spectrally, and a streak camera provides temporal resolution. The output of the streak camera is imaged on the CCD (charge-coupled device), and the data are read out electronically. By adjusting the sweep speed of the streak camera, anywhere from picoseconds to milliseconds, it is possible to resolve Raman spectra from numerous fluorescence spectra in the same sample. The key features of SSTARS include a compact streak tube capable of picosecond time resolution for collection of simultaneous spectral and temporal information, adaptive streak tube electronics that can rapidly change from one sweep rate to another over ranges of picoseconds to milliseconds, enabling collection of both Raman and fluorescence signatures versus time and wavelength, and Synchroscan integration that allows for a compact, low-power laser without compromising ultimate sensitivity.

  8. Adaptable radiation monitoring system and method

    DOEpatents

    Archer, Daniel E [Livermore, CA; Beauchamp, Brock R [San Ramon, CA; Mauger, G Joseph [Livermore, CA; Nelson, Karl E [Livermore, CA; Mercer, Michael B [Manteca, CA; Pletcher, David C [Sacramento, CA; Riot, Vincent J [Berkeley, CA; Schek, James L [Tracy, CA; Knapp, David A [Livermore, CA

    2006-06-20

    A portable radioactive-material detection system capable of detecting radioactive sources moving at high speeds. The system has at least one radiation detector capable of detecting gamma-radiation and coupled to an MCA capable of collecting spectral data in very small time bins of less than about 150 msec. A computer processor is connected to the MCA for determining from the spectral data if a triggering event has occurred. Spectral data is stored on a data storage device, and a power source supplies power to the detection system. Various configurations of the detection system may be adaptably arranged for various radiation detection scenarios. In a preferred embodiment, the computer processor operates as a server which receives spectral data from other networked detection systems, and communicates the collected data to a central data reporting system.

  9. A database for spectral image quality

    NASA Astrophysics Data System (ADS)

    Le Moan, Steven; George, Sony; Pedersen, Marius; Blahová, Jana; Hardeberg, Jon Yngve

    2015-01-01

    We introduce a new image database dedicated to multi-/hyperspectral image quality assessment. A total of nine scenes representing pseudo-at surfaces of different materials (textile, wood, skin. . . ) were captured by means of a 160 band hyperspectral system with a spectral range between 410 and 1000nm. Five spectral distortions were designed, applied to the spectral images and subsequently compared in a psychometric experiment, in order to provide a basis for applications such as the evaluation of spectral image difference measures. The database can be downloaded freely from http://www.colourlab.no/cid.

  10. Recent advances in the modeling of plasmas with the Particle-In-Cell methods

    NASA Astrophysics Data System (ADS)

    Vay, Jean-Luc; Lehe, Remi; Vincenti, Henri; Godfrey, Brendan; Lee, Patrick; Haber, Irv

    2015-11-01

    The Particle-In-Cell (PIC) approach is the method of choice for self-consistent simulations of plasmas from first principles. The fundamentals of the PIC method were established decades ago but improvements or variations are continuously being proposed. We report on several recent advances in PIC related algorithms, including: (a) detailed analysis of the numerical Cherenkov instability and its remediation, (b) analytic pseudo-spectral electromagnetic solvers in Cartesian and cylindrical (with azimuthal modes decomposition) geometries, (c) arbitrary-order finite-difference and generalized pseudo-spectral Maxwell solvers, (d) novel analysis of Maxwell's solvers' stencil variation and truncation, in application to domain decomposition strategies and implementation of Perfectly Matched Layers in high-order and pseudo-spectral solvers. Work supported by US-DOE Contracts DE-AC02-05CH11231 and the US-DOE SciDAC program ComPASS. Used resources of NERSC, supported by US-DOE Contract DE-AC02-05CH11231.

  11. Spectral Tuning of Killer Whale (Orcinus orca) Rhodopsin: Evidence for Positive Selection and Functional Adaptation in a Cetacean Visual Pigment.

    PubMed

    Dungan, Sarah Z; Kosyakov, Alexander; Chang, Belinda S W

    2016-02-01

    Cetaceans have undergone a remarkable evolutionary transition that was accompanied by many sensory adaptations, including modification of the visual system for underwater environments. Recent sequencing of cetacean genomes has made it possible to begin exploring the molecular basis of these adaptations. In this study we use in vitro expression methods to experimentally characterize the first step of the visual transduction cascade, the light activation of rhodopsin, for the killer whale. To investigate the spectral effects of amino acid substitutions thought to correspond with absorbance shifts relative to terrestrial mammals, we used the orca gene as a background for the first site-directed mutagenesis experiments in a cetacean rhodopsin. The S292A mutation had the largest effect, and was responsible for the majority of the spectral difference between killer whale and bovine (terrestrial) rhodopsin. Using codon-based likelihood models, we also found significant evidence for positive selection in cetacean rhodopsin sequences, including on spectral tuning sites we experimentally mutated. We then investigated patterns of ecological divergence that may be correlated with rhodopsin functional variation by using a series of clade models that partitioned the data set according to phylogeny, habitat, and foraging depth zone. Only the model partitioning according to depth was significant. This suggests that foraging dives might be a selective regime influencing cetacean rhodopsin divergence, and our experimental results indicate that spectral tuning may be playing an adaptive role in this process. Our study demonstrates that combining computational and experimental methods is crucial for gaining insight into the selection pressures underlying molecular evolution. © The Author 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  12. Spectral density method to Anderson-Holstein model

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chebrolu, Narasimha Raju, E-mail: narasimharaju.phy@gmail.com; Chatterjee, Ashok

    Two-parameter spectral density function of a magnetic impurity electron in a non-magnetic metal is calculated within the framework of the Anderson-Holstein model using the spectral density approximation method. The effect of electron-phonon interaction on the spectral function is investigated.

  13. Spectral methods for time dependent problems

    NASA Technical Reports Server (NTRS)

    Tadmor, Eitan

    1990-01-01

    Spectral approximations are reviewed for time dependent problems. Some basic ingredients from the spectral Fourier and Chebyshev approximations theory are discussed. A brief survey was made of hyperbolic and parabolic time dependent problems which are dealt with by both the energy method and the related Fourier analysis. The ideas presented above are combined in the study of accuracy stability and convergence of the spectral Fourier approximation to time dependent problems.

  14. Pseudo color ghost coding imaging with pseudo thermal light

    NASA Astrophysics Data System (ADS)

    Duan, De-yang; Xia, Yun-jie

    2018-04-01

    We present a new pseudo color imaging scheme named pseudo color ghost coding imaging based on ghost imaging but with multiwavelength source modulated by a spatial light modulator. Compared with conventional pseudo color imaging where there is no nondegenerate wavelength spatial correlations resulting in extra monochromatic images, the degenerate wavelength and nondegenerate wavelength spatial correlations between the idle beam and signal beam can be obtained simultaneously. This scheme can obtain more colorful image with higher quality than that in conventional pseudo color coding techniques. More importantly, a significant advantage of the scheme compared to the conventional pseudo color coding imaging techniques is the image with different colors can be obtained without changing the light source and spatial filter.

  15. A GIHS-based spectral preservation fusion method for remote sensing images using edge restored spectral modulation

    NASA Astrophysics Data System (ADS)

    Zhou, Xiran; Liu, Jun; Liu, Shuguang; Cao, Lei; Zhou, Qiming; Huang, Huawen

    2014-02-01

    High spatial resolution and spectral fidelity are basic standards for evaluating an image fusion algorithm. Numerous fusion methods for remote sensing images have been developed. Some of these methods are based on the intensity-hue-saturation (IHS) transform and the generalized IHS (GIHS), which may cause serious spectral distortion. Spectral distortion in the GIHS is proven to result from changes in saturation during fusion. Therefore, reducing such changes can achieve high spectral fidelity. A GIHS-based spectral preservation fusion method that can theoretically reduce spectral distortion is proposed in this study. The proposed algorithm consists of two steps. The first step is spectral modulation (SM), which uses the Gaussian function to extract spatial details and conduct SM of multispectral (MS) images. This method yields a desirable visual effect without requiring histogram matching between the panchromatic image and the intensity of the MS image. The second step uses the Gaussian convolution function to restore lost edge details during SM. The proposed method is proven effective and shown to provide better results compared with other GIHS-based methods.

  16. Cross-correlation least-squares reverse time migration in the pseudo-time domain

    NASA Astrophysics Data System (ADS)

    Li, Qingyang; Huang, Jianping; Li, Zhenchun

    2017-08-01

    The least-squares reverse time migration (LSRTM) method with higher image resolution and amplitude is becoming increasingly popular. However, the LSRTM is not widely used in field land data processing because of its sensitivity to the initial migration velocity model, large computational cost and mismatch of amplitudes between the synthetic and observed data. To overcome the shortcomings of the conventional LSRTM, we propose a cross-correlation least-squares reverse time migration algorithm in pseudo-time domain (PTCLSRTM). Our algorithm not only reduces the depth/velocity ambiguities, but also reduces the effect of velocity error on the imaging results. It relieves the accuracy requirements on the migration velocity model of least-squares migration (LSM). The pseudo-time domain algorithm eliminates the irregular wavelength sampling in the vertical direction, thus it can reduce the vertical grid points and memory requirements used during computation, which makes our method more computationally efficient than the standard implementation. Besides, for field data applications, matching the recorded amplitudes is a very difficult task because of the viscoelastic nature of the Earth and inaccuracies in the estimation of the source wavelet. To relax the requirement for strong amplitude matching of LSM, we extend the normalized cross-correlation objective function to the pseudo-time domain. Our method is only sensitive to the similarity between the predicted and the observed data. Numerical tests on synthetic and land field data confirm the effectiveness of our method and its adaptability for complex models.

  17. A fast and well-conditioned spectral method for singular integral equations

    NASA Astrophysics Data System (ADS)

    Slevinsky, Richard Mikael; Olver, Sheehan

    2017-03-01

    We develop a spectral method for solving univariate singular integral equations over unions of intervals by utilizing Chebyshev and ultraspherical polynomials to reformulate the equations as almost-banded infinite-dimensional systems. This is accomplished by utilizing low rank approximations for sparse representations of the bivariate kernels. The resulting system can be solved in O (m2 n) operations using an adaptive QR factorization, where m is the bandwidth and n is the optimal number of unknowns needed to resolve the true solution. The complexity is reduced to O (mn) operations by pre-caching the QR factorization when the same operator is used for multiple right-hand sides. Stability is proved by showing that the resulting linear operator can be diagonally preconditioned to be a compact perturbation of the identity. Applications considered include the Faraday cage, and acoustic scattering for the Helmholtz and gravity Helmholtz equations, including spectrally accurate numerical evaluation of the far- and near-field solution. The JULIA software package SingularIntegralEquations.jl implements our method with a convenient, user-friendly interface.

  18. Maximum-likelihood spectral estimation and adaptive filtering techniques with application to airborne Doppler weather radar. Thesis Technical Report No. 20

    NASA Technical Reports Server (NTRS)

    Lai, Jonathan Y.

    1994-01-01

    This dissertation focuses on the signal processing problems associated with the detection of hazardous windshears using airborne Doppler radar when weak weather returns are in the presence of strong clutter returns. In light of the frequent inadequacy of spectral-processing oriented clutter suppression methods, we model a clutter signal as multiple sinusoids plus Gaussian noise, and propose adaptive filtering approaches that better capture the temporal characteristics of the signal process. This idea leads to two research topics in signal processing: (1) signal modeling and parameter estimation, and (2) adaptive filtering in this particular signal environment. A high-resolution, low SNR threshold maximum likelihood (ML) frequency estimation and signal modeling algorithm is devised and proves capable of delineating both the spectral and temporal nature of the clutter return. Furthermore, the Least Mean Square (LMS) -based adaptive filter's performance for the proposed signal model is investigated, and promising simulation results have testified to its potential for clutter rejection leading to more accurate estimation of windspeed thus obtaining a better assessment of the windshear hazard.

  19. The Sternheimer-GW method and the spectral signatures of plasmonic polarons

    NASA Astrophysics Data System (ADS)

    Giustino, Feliciano

    During the past three decades the GW method has emerged among the most promising electronic structure techniques for predictive calculations of quasiparticle band structures. In order to simplify the GW work-flow while at the same time improving the calculation accuracy, we developed the Sternheimer-GW method. In Sternheimer-GW both the screened Coulomb interaction and the electron Green's function are evaluated by using exclusively occupied Kohn-Sham states, as in density-functional perturbation theory. In this talk I will review the basics of Sternheimer-GW, and I will discuss two recent applications to semiconductors and superconductors. In the case of semiconductors we calculated complete energy- and momentum-resolved spectral functions by combining Sternheimer-GW with the cumulant expansion approach. This study revealed the existence of band structure replicas which arise from electron-plasmon interactions. In the case of superconductors we calculated the Coulomb pseudo-potential from first principles, and combined this approach with the Eliashberg theory of the superconducting critical temperature. This work was supported by the Leverhulme Trust (RL-2012-001), the European Research Council (EU FP7/ERC 239578), the UK Engineering and Physical Sciences Research Council (EP/J009857/1), and the Graphene Flagship (EU FP7/604391).

  20. A spectral element method with adaptive segmentation for accurately simulating extracellular electrical stimulation of neurons.

    PubMed

    Eiber, Calvin D; Dokos, Socrates; Lovell, Nigel H; Suaning, Gregg J

    2017-05-01

    The capacity to quickly and accurately simulate extracellular stimulation of neurons is essential to the design of next-generation neural prostheses. Existing platforms for simulating neurons are largely based on finite-difference techniques; due to the complex geometries involved, the more powerful spectral or differential quadrature techniques cannot be applied directly. This paper presents a mathematical basis for the application of a spectral element method to the problem of simulating the extracellular stimulation of retinal neurons, which is readily extensible to neural fibers of any kind. The activating function formalism is extended to arbitrary neuron geometries, and a segmentation method to guarantee an appropriate choice of collocation points is presented. Differential quadrature may then be applied to efficiently solve the resulting cable equations. The capacity for this model to simulate action potentials propagating through branching structures and to predict minimum extracellular stimulation thresholds for individual neurons is demonstrated. The presented model is validated against published values for extracellular stimulation threshold and conduction velocity for realistic physiological parameter values. This model suggests that convoluted axon geometries are more readily activated by extracellular stimulation than linear axon geometries, which may have ramifications for the design of neural prostheses.

  1. A spectral mimetic least-squares method

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bochev, Pavel; Gerritsma, Marc

    We present a spectral mimetic least-squares method for a model diffusion–reaction problem, which preserves key conservation properties of the continuum problem. Casting the model problem into a first-order system for two scalar and two vector variables shifts material properties from the differential equations to a pair of constitutive relations. We also use this system to motivate a new least-squares functional involving all four fields and show that its minimizer satisfies the differential equations exactly. Discretization of the four-field least-squares functional by spectral spaces compatible with the differential operators leads to a least-squares method in which the differential equations are alsomore » satisfied exactly. Additionally, the latter are reduced to purely topological relationships for the degrees of freedom that can be satisfied without reference to basis functions. Furthermore, numerical experiments confirm the spectral accuracy of the method and its local conservation.« less

  2. A spectral mimetic least-squares method

    DOE PAGES

    Bochev, Pavel; Gerritsma, Marc

    2014-09-01

    We present a spectral mimetic least-squares method for a model diffusion–reaction problem, which preserves key conservation properties of the continuum problem. Casting the model problem into a first-order system for two scalar and two vector variables shifts material properties from the differential equations to a pair of constitutive relations. We also use this system to motivate a new least-squares functional involving all four fields and show that its minimizer satisfies the differential equations exactly. Discretization of the four-field least-squares functional by spectral spaces compatible with the differential operators leads to a least-squares method in which the differential equations are alsomore » satisfied exactly. Additionally, the latter are reduced to purely topological relationships for the degrees of freedom that can be satisfied without reference to basis functions. Furthermore, numerical experiments confirm the spectral accuracy of the method and its local conservation.« less

  3. Feature Transformation Detection Method with Best Spectral Band Selection Process for Hyper-spectral Imaging

    NASA Astrophysics Data System (ADS)

    Chen, Hai-Wen; McGurr, Mike; Brickhouse, Mark

    2015-11-01

    We present a newly developed feature transformation (FT) detection method for hyper-spectral imagery (HSI) sensors. In essence, the FT method, by transforming the original features (spectral bands) to a different feature domain, may considerably increase the statistical separation between the target and background probability density functions, and thus may significantly improve the target detection and identification performance, as evidenced by the test results in this paper. We show that by differentiating the original spectral, one can completely separate targets from the background using a single spectral band, leading to perfect detection results. In addition, we have proposed an automated best spectral band selection process with a double-threshold scheme that can rank the available spectral bands from the best to the worst for target detection. Finally, we have also proposed an automated cross-spectrum fusion process to further improve the detection performance in lower spectral range (<1000 nm) by selecting the best spectral band pair with multivariate analysis. Promising detection performance has been achieved using a small background material signature library for concept-proving, and has then been further evaluated and verified using a real background HSI scene collected by a HYDICE sensor.

  4. Spectral multigrid methods for elliptic equations 2

    NASA Technical Reports Server (NTRS)

    Zang, T. A.; Wong, Y. S.; Hussaini, M. Y.

    1983-01-01

    A detailed description of spectral multigrid methods is provided. This includes the interpolation and coarse-grid operators for both periodic and Dirichlet problems. The spectral methods for periodic problems use Fourier series and those for Dirichlet problems are based upon Chebyshev polynomials. An improved preconditioning for Dirichlet problems is given. Numerical examples and practical advice are included.

  5. Evaluation of AMOEBA: a spectral-spatial classification method

    USGS Publications Warehouse

    Jenson, Susan K.; Loveland, Thomas R.; Bryant, J.

    1982-01-01

    Muitispectral remotely sensed images have been treated as arbitrary multivariate spectral data for purposes of clustering and classifying. However, the spatial properties of image data can also be exploited. AMOEBA is a clustering and classification method that is based on a spatially derived model for image data. In an evaluation test, Landsat data were classified with both AMOEBA and a widely used spectral classifier. The test showed that irrigated crop types can be classified as accurately with the AMOEBA method as with the generally used spectral method ISOCLS; the AMOEBA method, however, requires less computer time.

  6. Pseudo-simple heteroclinic cycles in R4

    NASA Astrophysics Data System (ADS)

    Chossat, Pascal; Lohse, Alexander; Podvigina, Olga

    2018-06-01

    We study pseudo-simple heteroclinic cycles for a Γ-equivariant system in R4 with finite Γ ⊂ O(4) , and their nearby dynamics. In particular, in a first step towards a full classification - analogous to that which exists already for the class of simple cycles - we identify all finite subgroups of O(4) admitting pseudo-simple cycles. To this end we introduce a constructive method to build equivariant dynamical systems possessing a robust heteroclinic cycle. Extending a previous study we also investigate the existence of periodic orbits close to a pseudo-simple cycle, which depends on the symmetry groups of equilibria in the cycle. Moreover, we identify subgroups Γ ⊂ O(4) , Γ ⊄ SO(4) , admitting fragmentarily asymptotically stable pseudo-simple heteroclinic cycles. (It has been previously shown that for Γ ⊂ SO(4) pseudo-simple cycles generically are completely unstable.) Finally, we study a generalized heteroclinic cycle, which involves a pseudo-simple cycle as a subset.

  7. Adaptation by normal listeners to upward spectral shifts of speech: implications for cochlear implants.

    PubMed

    Rosen, S; Faulkner, A; Wilkinson, L

    1999-12-01

    Multi-channel cochlear implants typically present spectral information to the wrong "place" in the auditory nerve array, because electrodes can only be inserted partway into the cochlea. Although such spectral shifts are known to cause large immediate decrements in performance in simulations, the extent to which listeners can adapt to such shifts has yet to be investigated. Here, the effects of a four-channel implant in normal listeners have been simulated, and performance tested with unshifted spectral information and with the equivalent of a 6.5-mm basalward shift on the basilar membrane (1.3-2.9 octaves, depending on frequency). As expected, the unshifted simulation led to relatively high levels of mean performance (e.g., 64% of words in sentences correctly identified) whereas the shifted simulation led to very poor results (e.g., 1% of words). However, after just nine 20-min sessions of connected discourse tracking with the shifted simulation, performance improved significantly for the identification of intervocalic consonants, medial vowels in monosyllables, and words in sentences (30% of words). Also, listeners were able to track connected discourse of shifted signals without lipreading at rates up to 40 words per minute. Although we do not know if complete adaptation to the shifted signals is possible, it is clear that short-term experiments seriously exaggerate the long-term consequences of such spectral shifts.

  8. Spectral solver for multi-scale plasma physics simulations with dynamically adaptive number of moments

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Vencels, Juris; Delzanno, Gian Luca; Johnson, Alec

    2015-06-01

    A spectral method for kinetic plasma simulations based on the expansion of the velocity distribution function in a variable number of Hermite polynomials is presented. The method is based on a set of non-linear equations that is solved to determine the coefficients of the Hermite expansion satisfying the Vlasov and Poisson equations. In this paper, we first show that this technique combines the fluid and kinetic approaches into one framework. Second, we present an adaptive strategy to increase and decrease the number of Hermite functions dynamically during the simulation. The technique is applied to the Landau damping and two-stream instabilitymore » test problems. Performance results show 21% and 47% saving of total simulation time in the Landau and two-stream instability test cases, respectively.« less

  9. [Hysterical pseudo-coma: A case report].

    PubMed

    Chouaib, N; Chouaib, H; Belyamani, L; Otheman, Y; Bichra, M Z

    2015-09-01

    Hysterical pseudo-coma corresponds to a state of clinical sleep with contrasting waking electroencephalogram. It can last several hours or even several days in the absence of an underlying organic disease. In psychiatry, this disorder is currently part of the "dissociative disorder not otherwise specified". Through this case report, we describe the evolution of a hysterical pseudo-coma that lasted four days in a 28-year-old man. The normality of biological, radiological and electroencephalographic assessments, and responsiveness of the patient during the implementation of a nasogastric tube, led us to suspect a mental origin. An adapted psychiatric care allowed the patient to recover his autonomy after three days of hospitalization. This had prevented the escalation of explorations and invasive treatments. However, the search for organic comorbidity and its management remains a priority. Copyright © 2014 L’Encéphale, Paris. Published by Elsevier Masson SAS. All rights reserved.

  10. Pseudo-set framing.

    PubMed

    Barasz, Kate; John, Leslie K; Keenan, Elizabeth A; Norton, Michael I

    2017-10-01

    Pseudo-set framing-arbitrarily grouping items or tasks together as part of an apparent "set"-motivates people to reach perceived completion points. Pseudo-set framing changes gambling choices (Study 1), effort (Studies 2 and 3), giving behavior (Field Data and Study 4), and purchase decisions (Study 5). These effects persist in the absence of any reward, when a cost must be incurred, and after participants are explicitly informed of the arbitrariness of the set. Drawing on Gestalt psychology, we develop a conceptual account that predicts what will-and will not-act as a pseudo-set, and defines the psychological process through which these pseudo-sets affect behavior: over and above typical reference points, pseudo-set framing alters perceptions of (in)completeness, making intermediate progress seem less complete. In turn, these feelings of incompleteness motivate people to persist until the pseudo-set has been fulfilled. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

  11. [An improved low spectral distortion PCA fusion method].

    PubMed

    Peng, Shi; Zhang, Ai-Wu; Li, Han-Lun; Hu, Shao-Xing; Meng, Xian-Gang; Sun, Wei-Dong

    2013-10-01

    Aiming at the spectral distortion produced in PCA fusion process, the present paper proposes an improved low spectral distortion PCA fusion method. This method uses NCUT (normalized cut) image segmentation algorithm to make a complex hyperspectral remote sensing image into multiple sub-images for increasing the separability of samples, which can weaken the spectral distortions of traditional PCA fusion; Pixels similarity weighting matrix and masks were produced by using graph theory and clustering theory. These masks are used to cut the hyperspectral image and high-resolution image into some sub-region objects. All corresponding sub-region objects between the hyperspectral image and high-resolution image are fused by using PCA method, and all sub-regional integration results are spliced together to produce a new image. In the experiment, Hyperion hyperspectral data and Rapid Eye data were used. And the experiment result shows that the proposed method has the same ability to enhance spatial resolution and greater ability to improve spectral fidelity performance.

  12. Adaptation to an Electropalatograph Palate: Acoustic, Impressionistic, and Perceptual Data

    ERIC Educational Resources Information Center

    McLeod, Sharynne; Searl, Jeff

    2006-01-01

    Purpose: The purpose of this study was to evaluate adaptation to the electropalatograph (EPG) from the perspective of consonant acoustics, listener perceptions, and speaker ratings. Method: Seven adults with typical speech wore an EPG and pseudo-EPG palate over 2 days and produced syllables, read a passage, counted, and rated their adaptation to…

  13. Recent applications of spectral methods in fluid dynamics

    NASA Technical Reports Server (NTRS)

    Zang, T. A.; Hussaini, M. Y.

    1985-01-01

    Origins of spectral methods, especially their relation to the method of weighted residuals, are surveyed. Basic Fourier and Chebyshev spectral concepts are reviewed and demonstrated through application to simple model problems. Both collocation and tau methods are considered. These techniques are then applied to a number of difficult, nonlinear problems of hyperbolic, parabolic, elliptic and mixzed type. Fluid dynamical applications are emphasized.

  14. A new automated spectral feature extraction method and its application in spectral classification and defective spectra recovery

    NASA Astrophysics Data System (ADS)

    Wang, Ke; Guo, Ping; Luo, A.-Li

    2017-03-01

    Spectral feature extraction is a crucial procedure in automated spectral analysis. This procedure starts from the spectral data and produces informative and non-redundant features, facilitating the subsequent automated processing and analysis with machine-learning and data-mining techniques. In this paper, we present a new automated feature extraction method for astronomical spectra, with application in spectral classification and defective spectra recovery. The basic idea of our approach is to train a deep neural network to extract features of spectra with different levels of abstraction in different layers. The deep neural network is trained with a fast layer-wise learning algorithm in an analytical way without any iterative optimization procedure. We evaluate the performance of the proposed scheme on real-world spectral data. The results demonstrate that our method is superior regarding its comprehensive performance, and the computational cost is significantly lower than that for other methods. The proposed method can be regarded as a new valid alternative general-purpose feature extraction method for various tasks in spectral data analysis.

  15. Topics in spectral methods

    NASA Technical Reports Server (NTRS)

    Gottlieb, D.; Turkel, E.

    1985-01-01

    After detailing the construction of spectral approximations to time-dependent mixed initial boundary value problems, a study is conducted of differential equations of the form 'partial derivative of u/partial derivative of t = Lu + f', where for each t, u(t) belongs to a Hilbert space such that u satisfies homogeneous boundary conditions. For the sake of simplicity, it is assumed that L is an unbounded, time-independent linear operator. Attention is given to Fourier methods of both Galerkin and pseudospectral method types, the Galerkin method, the pseudospectral Chebyshev and Legendre methods, the error equation, hyperbolic partial differentiation equations, and time discretization and iterative methods.

  16. An Excel‐based implementation of the spectral method of action potential alternans analysis

    PubMed Central

    Pearman, Charles M.

    2014-01-01

    Abstract Action potential (AP) alternans has been well established as a mechanism of arrhythmogenesis and sudden cardiac death. Proper interpretation of AP alternans requires a robust method of alternans quantification. Traditional methods of alternans analysis neglect higher order periodicities that may have greater pro‐arrhythmic potential than classical 2:1 alternans. The spectral method of alternans analysis, already widely used in the related study of microvolt T‐wave alternans, has also been used to study AP alternans. Software to meet the specific needs of AP alternans analysis is not currently available in the public domain. An AP analysis tool is implemented here, written in Visual Basic for Applications and using Microsoft Excel as a shell. This performs a sophisticated analysis of alternans behavior allowing reliable distinction of alternans from random fluctuations, quantification of alternans magnitude, and identification of which phases of the AP are most affected. In addition, the spectral method has been adapted to allow detection and quantification of higher order regular oscillations. Analysis of action potential morphology is also performed. A simple user interface enables easy import, analysis, and export of collated results. PMID:25501439

  17. Photon counting spectral breast CT: effect of adaptive filtration on CT numbers, noise, and contrast to noise ratio.

    PubMed

    Silkwood, Justin D; Matthews, Kenneth L; Shikhaliev, Polad M

    2013-05-01

    Photon counting spectral (PCS) computed tomography (CT) shows promise for breast imaging. An issue with current photon-counting detectors is low count rate capabilities, artifacts resulting from nonuniform count rate across the field of view, and suboptimal spectral information. These issues are addressed in part by using tissue-equivalent adaptive filtration of the x-ray beam. The purpose of the study was to investigate the effect of adaptive filtration on different aspects of PCS breast CT. The theoretical formulation for the filter shape was derived for different filter materials and evaluated by simulation and an experimental prototype of the filter was fabricated from a tissue-like material (acrylic). The PCS CT images of a glandular breast phantom with adipose and iodine contrast elements were simulated at 40, 60, 90, and 120 kVp tube voltages, with and without adaptive filter. The CT numbers, CT noise, and contrast-to-noise ratio (CNR) were compared for spectral CT images acquired with and without adaptive filters. Similar comparison was made for material-decomposed PCS CT images. The adaptive filter improved the uniformity of CT numbers, CT noise, and CNR in both ordinary and material decomposed PCS CT images. At the same tube output the average CT noise with adaptive filter, although uniform, was higher than the average noise without adaptive filter due to x-ray absorption by the filter. Increasing tube output, so that average skin exposure with the adaptive filter was same as without filter, made the noise with adaptive filter comparable to or lower than that without adaptive filter. Similar effects were observed when energy weighting was applied, and when material decompositions were performed using energy selective CT data. An adaptive filter decreases count rate requirements to the photon counting detectors which enables PCS breast CT based on commercially available detector technologies. Adaptive filter also improves image quality in PCS breast CT by

  18. Mapping implicit spectral methods to distributed memory architectures

    NASA Technical Reports Server (NTRS)

    Overman, Andrea L.; Vanrosendale, John

    1991-01-01

    Spectral methods were proven invaluable in numerical simulation of PDEs (Partial Differential Equations), but the frequent global communication required raises a fundamental barrier to their use on highly parallel architectures. To explore this issue, a 3-D implicit spectral method was implemented on an Intel hypercube. Utilization of about 50 percent was achieved on a 32 node iPSC/860 hypercube, for a 64 x 64 x 64 Fourier-spectral grid; finer grids yield higher utilizations. Chebyshev-spectral grids are more problematic, since plane-relaxation based multigrid is required. However, by using a semicoarsening multigrid algorithm, and by relaxing all multigrid levels concurrently, relatively high utilizations were also achieved in this harder case.

  19. Spectral/ hp element methods: Recent developments, applications, and perspectives

    NASA Astrophysics Data System (ADS)

    Xu, Hui; Cantwell, Chris D.; Monteserin, Carlos; Eskilsson, Claes; Engsig-Karup, Allan P.; Sherwin, Spencer J.

    2018-02-01

    The spectral/ hp element method combines the geometric flexibility of the classical h-type finite element technique with the desirable numerical properties of spectral methods, employing high-degree piecewise polynomial basis functions on coarse finite element-type meshes. The spatial approximation is based upon orthogonal polynomials, such as Legendre or Chebychev polynomials, modified to accommodate a C 0 - continuous expansion. Computationally and theoretically, by increasing the polynomial order p, high-precision solutions and fast convergence can be obtained and, in particular, under certain regularity assumptions an exponential reduction in approximation error between numerical and exact solutions can be achieved. This method has now been applied in many simulation studies of both fundamental and practical engineering flows. This paper briefly describes the formulation of the spectral/ hp element method and provides an overview of its application to computational fluid dynamics. In particular, it focuses on the use of the spectral/ hp element method in transitional flows and ocean engineering. Finally, some of the major challenges to be overcome in order to use the spectral/ hp element method in more complex science and engineering applications are discussed.

  20. Pseudo CT estimation from MRI using patch-based random forest

    NASA Astrophysics Data System (ADS)

    Yang, Xiaofeng; Lei, Yang; Shu, Hui-Kuo; Rossi, Peter; Mao, Hui; Shim, Hyunsuk; Curran, Walter J.; Liu, Tian

    2017-02-01

    Recently, MR simulators gain popularity because of unnecessary radiation exposure of CT simulators being used in radiation therapy planning. We propose a method for pseudo CT estimation from MR images based on a patch-based random forest. Patient-specific anatomical features are extracted from the aligned training images and adopted as signatures for each voxel. The most robust and informative features are identified using feature selection to train the random forest. The well-trained random forest is used to predict the pseudo CT of a new patient. This prediction technique was tested with human brain images and the prediction accuracy was assessed using the original CT images. Peak signal-to-noise ratio (PSNR) and feature similarity (FSIM) indexes were used to quantify the differences between the pseudo and original CT images. The experimental results showed the proposed method could accurately generate pseudo CT images from MR images. In summary, we have developed a new pseudo CT prediction method based on patch-based random forest, demonstrated its clinical feasibility, and validated its prediction accuracy. This pseudo CT prediction technique could be a useful tool for MRI-based radiation treatment planning and attenuation correction in a PET/MRI scanner.

  1. A Parallel Implementation of Multilevel Recursive Spectral Bisection for Application to Adaptive Unstructured Meshes. Chapter 1

    NASA Technical Reports Server (NTRS)

    Barnard, Stephen T.; Simon, Horst; Lasinski, T. A. (Technical Monitor)

    1994-01-01

    The design of a parallel implementation of multilevel recursive spectral bisection is described. The goal is to implement a code that is fast enough to enable dynamic repartitioning of adaptive meshes.

  2. Advances and future directions of research on spectral methods

    NASA Technical Reports Server (NTRS)

    Patera, A. T.

    1986-01-01

    Recent advances in spectral methods are briefly reviewed and characterized with respect to their convergence and computational complexity. Classical finite element and spectral approaches are then compared, and spectral element (or p-type finite element) approximations are introduced. The method is applied to the full Navier-Stokes equations, and examples are given of the application of the technique to several transitional flows. Future directions of research in the field are outlined.

  3. Spectral methods to detect surface mines

    NASA Astrophysics Data System (ADS)

    Winter, Edwin M.; Schatten Silvious, Miranda

    2008-04-01

    Over the past five years, advances have been made in the spectral detection of surface mines under minefield detection programs at the U. S. Army RDECOM CERDEC Night Vision and Electronic Sensors Directorate (NVESD). The problem of detecting surface land mines ranges from the relatively simple, the detection of large anti-vehicle mines on bare soil, to the very difficult, the detection of anti-personnel mines in thick vegetation. While spatial and spectral approaches can be applied to the detection of surface mines, spatial-only detection requires many pixels-on-target such that the mine is actually imaged and shape-based features can be exploited. This method is unreliable in vegetated areas because only part of the mine may be exposed, while spectral detection is possible without the mine being resolved. At NVESD, hyperspectral and multi-spectral sensors throughout the reflection and thermal spectral regimes have been applied to the mine detection problem. Data has been collected on mines in forest and desert regions and algorithms have been developed both to detect the mines as anomalies and to detect the mines based on their spectral signature. In addition to the detection of individual mines, algorithms have been developed to exploit the similarities of mines in a minefield to improve their detection probability. In this paper, the types of spectral data collected over the past five years will be summarized along with the advances in algorithm development.

  4. Evolutionary Computing Methods for Spectral Retrieval

    NASA Technical Reports Server (NTRS)

    Terrile, Richard; Fink, Wolfgang; Huntsberger, Terrance; Lee, Seugwon; Tisdale, Edwin; VonAllmen, Paul; Tinetti, Geivanna

    2009-01-01

    A methodology for processing spectral images to retrieve information on underlying physical, chemical, and/or biological phenomena is based on evolutionary and related computational methods implemented in software. In a typical case, the solution (the information that one seeks to retrieve) consists of parameters of a mathematical model that represents one or more of the phenomena of interest. The methodology was developed for the initial purpose of retrieving the desired information from spectral image data acquired by remote-sensing instruments aimed at planets (including the Earth). Examples of information desired in such applications include trace gas concentrations, temperature profiles, surface types, day/night fractions, cloud/aerosol fractions, seasons, and viewing angles. The methodology is also potentially useful for retrieving information on chemical and/or biological hazards in terrestrial settings. In this methodology, one utilizes an iterative process that minimizes a fitness function indicative of the degree of dissimilarity between observed and synthetic spectral and angular data. The evolutionary computing methods that lie at the heart of this process yield a population of solutions (sets of the desired parameters) within an accuracy represented by a fitness-function value specified by the user. The evolutionary computing methods (ECM) used in this methodology are Genetic Algorithms and Simulated Annealing, both of which are well-established optimization techniques and have also been described in previous NASA Tech Briefs articles. These are embedded in a conceptual framework, represented in the architecture of the implementing software, that enables automatic retrieval of spectral and angular data and analysis of the retrieved solutions for uniqueness.

  5. Impact of pseudo-continuous fermentation on the ethanol tolerance of Scheffersomyces stipitis.

    PubMed

    Liang, Meng; Kim, Min Hea; He, Qinghua Peter; Wang, Jin

    2013-09-01

    In this work we conducted the pseudo-continuous fermentation, i.e., continuous fermentation with cell retention, using Scheffersomyces stipitis, and studied its effect on ethanol tolerance of the strain. During the fermentation experiments, S. stipitis was adapted to a mild concentration of ethanol (20-26 g/L) for two weeks. Two substrates (glucose and xylose) were used in different fermentation experiments. After fermentation, various experiments were performed to evaluate the ethanol tolerance of adapted cells and unadapted cells. Compared to the unadapted cells, the viability of adapted cells increased by 8 folds with glucose as the carbon source and 6 folds with xylose as the carbon source following exposure to 60 g/L ethanol for 2 h. Improved ethanol tolerance of the adapted cells was also revealed in the effects of ethanol on plasma membrane permeability, extracellular alkalization and acidification. The mathematical modeling of cell leakage, extracellular alkalization and acidification revealed that cells cultured on glucose show better ethanol tolerance than cells cultured on xylose but the differences become smaller for adapted cells. The results show that pseudo-continuous fermentation can effectively improve cell's ethanol tolerance due to the environmental pressure during the fermentation process. Copyright © 2013 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  6. A NDVI assisted remote sensing image adaptive scale segmentation method

    NASA Astrophysics Data System (ADS)

    Zhang, Hong; Shen, Jinxiang; Ma, Yanmei

    2018-03-01

    Multiscale segmentation of images can effectively form boundaries of different objects with different scales. However, for the remote sensing image which widely coverage with complicated ground objects, the number of suitable segmentation scales, and each of the scale size is still difficult to be accurately determined, which severely restricts the rapid information extraction of the remote sensing image. A great deal of experiments showed that the normalized difference vegetation index (NDVI) can effectively express the spectral characteristics of a variety of ground objects in remote sensing images. This paper presents a method using NDVI assisted adaptive segmentation of remote sensing images, which segment the local area by using NDVI similarity threshold to iteratively select segmentation scales. According to the different regions which consist of different targets, different segmentation scale boundaries could be created. The experimental results showed that the adaptive segmentation method based on NDVI can effectively create the objects boundaries for different ground objects of remote sensing images.

  7. Adaptive coding of MSS imagery. [Multi Spectral band Scanners

    NASA Technical Reports Server (NTRS)

    Habibi, A.; Samulon, A. S.; Fultz, G. L.; Lumb, D.

    1977-01-01

    A number of adaptive data compression techniques are considered for reducing the bandwidth of multispectral data. They include adaptive transform coding, adaptive DPCM, adaptive cluster coding, and a hybrid method. The techniques are simulated and their performance in compressing the bandwidth of Landsat multispectral images is evaluated and compared using signal-to-noise ratio and classification consistency as fidelity criteria.

  8. Time-dependent spectral renormalization method

    NASA Astrophysics Data System (ADS)

    Cole, Justin T.; Musslimani, Ziad H.

    2017-11-01

    The spectral renormalization method was introduced by Ablowitz and Musslimani (2005) as an effective way to numerically compute (time-independent) bound states for certain nonlinear boundary value problems. In this paper, we extend those ideas to the time domain and introduce a time-dependent spectral renormalization method as a numerical means to simulate linear and nonlinear evolution equations. The essence of the method is to convert the underlying evolution equation from its partial or ordinary differential form (using Duhamel's principle) into an integral equation. The solution sought is then viewed as a fixed point in both space and time. The resulting integral equation is then numerically solved using a simple renormalized fixed-point iteration method. Convergence is achieved by introducing a time-dependent renormalization factor which is numerically computed from the physical properties of the governing evolution equation. The proposed method has the ability to incorporate physics into the simulations in the form of conservation laws or dissipation rates. This novel scheme is implemented on benchmark evolution equations: the classical nonlinear Schrödinger (NLS), integrable PT symmetric nonlocal NLS and the viscous Burgers' equations, each of which being a prototypical example of a conservative and dissipative dynamical system. Numerical implementation and algorithm performance are also discussed.

  9. An Excel-based implementation of the spectral method of action potential alternans analysis.

    PubMed

    Pearman, Charles M

    2014-12-01

    Action potential (AP) alternans has been well established as a mechanism of arrhythmogenesis and sudden cardiac death. Proper interpretation of AP alternans requires a robust method of alternans quantification. Traditional methods of alternans analysis neglect higher order periodicities that may have greater pro-arrhythmic potential than classical 2:1 alternans. The spectral method of alternans analysis, already widely used in the related study of microvolt T-wave alternans, has also been used to study AP alternans. Software to meet the specific needs of AP alternans analysis is not currently available in the public domain. An AP analysis tool is implemented here, written in Visual Basic for Applications and using Microsoft Excel as a shell. This performs a sophisticated analysis of alternans behavior allowing reliable distinction of alternans from random fluctuations, quantification of alternans magnitude, and identification of which phases of the AP are most affected. In addition, the spectral method has been adapted to allow detection and quantification of higher order regular oscillations. Analysis of action potential morphology is also performed. A simple user interface enables easy import, analysis, and export of collated results. © 2014 The Author. Physiological Reports published by Wiley Periodicals, Inc. on behalf of the American Physiological Society and The Physiological Society.

  10. Domain decomposition preconditioners for the spectral collocation method

    NASA Technical Reports Server (NTRS)

    Quarteroni, Alfio; Sacchilandriani, Giovanni

    1988-01-01

    Several block iteration preconditioners are proposed and analyzed for the solution of elliptic problems by spectral collocation methods in a region partitioned into several rectangles. It is shown that convergence is achieved with a rate which does not depend on the polynomial degree of the spectral solution. The iterative methods here presented can be effectively implemented on multiprocessor systems due to their high degree of parallelism.

  11. Performance comparisons on spatial lattice algorithm and direct matrix inverse method with application to adaptive arrays processing

    NASA Technical Reports Server (NTRS)

    An, S. H.; Yao, K.

    1986-01-01

    Lattice algorithm has been employed in numerous adaptive filtering applications such as speech analysis/synthesis, noise canceling, spectral analysis, and channel equalization. In this paper the application to adaptive-array processing is discussed. The advantages are fast convergence rate as well as computational accuracy independent of the noise and interference conditions. The results produced by this technique are compared to those obtained by the direct matrix inverse method.

  12. Petascale turbulence simulation using a highly parallel fast multipole method on GPUs

    NASA Astrophysics Data System (ADS)

    Yokota, Rio; Barba, L. A.; Narumi, Tetsu; Yasuoka, Kenji

    2013-03-01

    This paper reports large-scale direct numerical simulations of homogeneous-isotropic fluid turbulence, achieving sustained performance of 1.08 petaflop/s on GPU hardware using single precision. The simulations use a vortex particle method to solve the Navier-Stokes equations, with a highly parallel fast multipole method (FMM) as numerical engine, and match the current record in mesh size for this application, a cube of 40963 computational points solved with a spectral method. The standard numerical approach used in this field is the pseudo-spectral method, relying on the FFT algorithm as the numerical engine. The particle-based simulations presented in this paper quantitatively match the kinetic energy spectrum obtained with a pseudo-spectral method, using a trusted code. In terms of parallel performance, weak scaling results show the FMM-based vortex method achieving 74% parallel efficiency on 4096 processes (one GPU per MPI process, 3 GPUs per node of the TSUBAME-2.0 system). The FFT-based spectral method is able to achieve just 14% parallel efficiency on the same number of MPI processes (using only CPU cores), due to the all-to-all communication pattern of the FFT algorithm. The calculation time for one time step was 108 s for the vortex method and 154 s for the spectral method, under these conditions. Computing with 69 billion particles, this work exceeds by an order of magnitude the largest vortex-method calculations to date.

  13. Adaptive Monte Carlo methods

    NASA Astrophysics Data System (ADS)

    Fasnacht, Marc

    We develop adaptive Monte Carlo methods for the calculation of the free energy as a function of a parameter of interest. The methods presented are particularly well-suited for systems with complex energy landscapes, where standard sampling techniques have difficulties. The Adaptive Histogram Method uses a biasing potential derived from histograms recorded during the simulation to achieve uniform sampling in the parameter of interest. The Adaptive Integration method directly calculates an estimate of the free energy from the average derivative of the Hamiltonian with respect to the parameter of interest and uses it as a biasing potential. We compare both methods to a state of the art method, and demonstrate that they compare favorably for the calculation of potentials of mean force of dense Lennard-Jones fluids. We use the Adaptive Integration Method to calculate accurate potentials of mean force for different types of simple particles in a Lennard-Jones fluid. Our approach allows us to separate the contributions of the solvent to the potential of mean force from the effect of the direct interaction between the particles. With contributions of the solvent determined, we can find the potential of mean force directly for any other direct interaction without additional simulations. We also test the accuracy of the Adaptive Integration Method on a thermodynamic cycle, which allows us to perform a consistency check between potentials of mean force and chemical potentials calculated using the Adaptive Integration Method. The results demonstrate a high degree of consistency of the method.

  14. Logarithmic compression methods for spectral data

    DOEpatents

    Dunham, Mark E.

    2003-01-01

    A method is provided for logarithmic compression, transmission, and expansion of spectral data. A log Gabor transformation is made of incoming time series data to output spectral phase and logarithmic magnitude values. The output phase and logarithmic magnitude values are compressed by selecting only magnitude values above a selected threshold and corresponding phase values to transmit compressed phase and logarithmic magnitude values. A reverse log Gabor transformation is then performed on the transmitted phase and logarithmic magnitude values to output transmitted time series data to a user.

  15. Generalized Pseudo-Reaction Zone Model for Non-Ideal Explosives

    NASA Astrophysics Data System (ADS)

    Wescott, Bradley

    2007-06-01

    The pseudo-reaction zone model was proposed to improve engineering scale simulations when using Detonation Shock Dynamics with high explosives that have a slow reaction component. In this work an extension of the pseudo-reaction zone model is developed for non-ideal explosives that propagate well below their steady-planar Chapman-Jouguet velocity. A programmed burn method utilizing Detonation Shock Dynamics and a detonation velocity dependent pseudo-reaction rate has been developed for non-ideal explosives and applied to the explosive mixture of ammonium nitrate and fuel oil (ANFO). The pseudo-reaction rate is calibrated to the experimentally obtained normal detonation velocity---shock curvature relation. The generalized pseudo-reaction zone model proposed here predicts the cylinder expansion to within 1% by accounting for the slow reaction in ANFO.

  16. Intestinal Pseudo-Obstruction

    MedlinePlus

    ... condition as adults. Intestinal pseudo-obstruction may be acute, occurring suddenly and lasting a short time, or it may be chronic, or long lasting. Acute colonic pseudo-obstruction, also called Ogilvie syndrome or ...

  17. Type II Supernova Spectral Diversity. I. Observations, Sample Characterization, and Spectral Line Evolution

    NASA Astrophysics Data System (ADS)

    Gutiérrez, Claudia P.; Anderson, Joseph P.; Hamuy, Mario; Morrell, Nidia; González-Gaitan, Santiago; Stritzinger, Maximilian D.; Phillips, Mark M.; Galbany, Lluis; Folatelli, Gastón; Dessart, Luc; Contreras, Carlos; Della Valle, Massimo; Freedman, Wendy L.; Hsiao, Eric Y.; Krisciunas, Kevin; Madore, Barry F.; Maza, José; Suntzeff, Nicholas B.; Prieto, Jose Luis; González, Luis; Cappellaro, Enrico; Navarrete, Mauricio; Pizzella, Alessandro; Ruiz, Maria T.; Smith, R. Chris; Turatto, Massimo

    2017-11-01

    We present 888 visual-wavelength spectra of 122 nearby type II supernovae (SNe II) obtained between 1986 and 2009, and ranging between 3 and 363 days post-explosion. In this first paper, we outline our observations and data reduction techniques, together with a characterization based on the spectral diversity of SNe II. A statistical analysis of the spectral matching technique is discussed as an alternative to nondetection constraints for estimating SN explosion epochs. The time evolution of spectral lines is presented and analyzed in terms of how this differs for SNe of different photometric, spectral, and environmental properties: velocities, pseudo-equivalent widths, decline rates, magnitudes, time durations, and environment metallicity. Our sample displays a large range in ejecta expansion velocities, from ˜9600 to ˜1500 km s-1 at 50 days post-explosion with a median {{{H}}}α value of 7300 km s-1. This is most likely explained through differing explosion energies. Significant diversity is also observed in the absolute strength of spectral lines, characterized through their pseudo-equivalent widths. This implies significant diversity in both temperature evolution (linked to progenitor radius) and progenitor metallicity between different SNe II. Around 60% of our sample shows an extra absorption component on the blue side of the {{{H}}}α P-Cygni profile (“Cachito” feature) between 7 and 120 days since explosion. Studying the nature of Cachito, we conclude that these features at early times (before ˜35 days) are associated with Si II λ 6355, while past the middle of the plateau phase they are related to high velocity (HV) features of hydrogen lines. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile; and the Gemini Observatory, Cerro Pachon, Chile (Gemini Program GS-2008B-Q-56). Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere

  18. Brain MR image segmentation using NAMS in pseudo-color.

    PubMed

    Li, Hua; Chen, Chuanbo; Fang, Shaohong; Zhao, Shengrong

    2017-12-01

    Image segmentation plays a crucial role in various biomedical applications. In general, the segmentation of brain Magnetic Resonance (MR) images is mainly used to represent the image with several homogeneous regions instead of pixels for surgical analyzing and planning. This paper proposes a new approach for segmenting MR brain images by using pseudo-color based segmentation with Non-symmetry and Anti-packing Model with Squares (NAMS). First of all, the NAMS model is presented. The model can represent the image with sub-patterns to keep the image content and largely reduce the data redundancy. Second, the key idea is proposed that convert the original gray-scale brain MR image into a pseudo-colored image and then segment the pseudo-colored image with NAMS model. The pseudo-colored image can enhance the color contrast in different tissues in brain MR images, which can improve the precision of segmentation as well as directly visual perceptional distinction. Experimental results indicate that compared with other brain MR image segmentation methods, the proposed NAMS based pseudo-color segmentation method performs more excellent in not only segmenting precisely but also saving storage.

  19. A Spectral Method for Spatial Downscaling

    PubMed Central

    Reich, Brian J.; Chang, Howard H.; Foley, Kristen M.

    2014-01-01

    Summary Complex computer models play a crucial role in air quality research. These models are used to evaluate potential regulatory impacts of emission control strategies and to estimate air quality in areas without monitoring data. For both of these purposes, it is important to calibrate model output with monitoring data to adjust for model biases and improve spatial prediction. In this article, we propose a new spectral method to study and exploit complex relationships between model output and monitoring data. Spectral methods allow us to estimate the relationship between model output and monitoring data separately at different spatial scales, and to use model output for prediction only at the appropriate scales. The proposed method is computationally efficient and can be implemented using standard software. We apply the method to compare Community Multiscale Air Quality (CMAQ) model output with ozone measurements in the United States in July 2005. We find that CMAQ captures large-scale spatial trends, but has low correlation with the monitoring data at small spatial scales. PMID:24965037

  20. A TV-constrained decomposition method for spectral CT

    NASA Astrophysics Data System (ADS)

    Guo, Xiaoyue; Zhang, Li; Xing, Yuxiang

    2017-03-01

    Spectral CT is attracting more and more attention in medicine, industrial nondestructive testing and security inspection field. Material decomposition is an important issue to a spectral CT to discriminate materials. Because of the spectrum overlap of energy channels, as well as the correlation of basis functions, it is well acknowledged that decomposition step in spectral CT imaging causes noise amplification and artifacts in component coefficient images. In this work, we propose materials decomposition via an optimization method to improve the quality of decomposed coefficient images. On the basis of general optimization problem, total variance minimization is constrained on coefficient images in our overall objective function with adjustable weights. We solve this constrained optimization problem under the framework of ADMM. Validation on both a numerical dental phantom in simulation and a real phantom of pig leg on a practical CT system using dual-energy imaging is executed. Both numerical and physical experiments give visually obvious better reconstructions than a general direct inverse method. SNR and SSIM are adopted to quantitatively evaluate the image quality of decomposed component coefficients. All results demonstrate that the TV-constrained decomposition method performs well in reducing noise without losing spatial resolution so that improving the image quality. The method can be easily incorporated into different types of spectral imaging modalities, as well as for cases with energy channels more than two.

  1. Parallel 3D Mortar Element Method for Adaptive Nonconforming Meshes

    NASA Technical Reports Server (NTRS)

    Feng, Huiyu; Mavriplis, Catherine; VanderWijngaart, Rob; Biswas, Rupak

    2004-01-01

    High order methods are frequently used in computational simulation for their high accuracy. An efficient way to avoid unnecessary computation in smooth regions of the solution is to use adaptive meshes which employ fine grids only in areas where they are needed. Nonconforming spectral elements allow the grid to be flexibly adjusted to satisfy the computational accuracy requirements. The method is suitable for computational simulations of unsteady problems with very disparate length scales or unsteady moving features, such as heat transfer, fluid dynamics or flame combustion. In this work, we select the Mark Element Method (MEM) to handle the non-conforming interfaces between elements. A new technique is introduced to efficiently implement MEM in 3-D nonconforming meshes. By introducing an "intermediate mortar", the proposed method decomposes the projection between 3-D elements and mortars into two steps. In each step, projection matrices derived in 2-D are used. The two-step method avoids explicitly forming/deriving large projection matrices for 3-D meshes, and also helps to simplify the implementation. This new technique can be used for both h- and p-type adaptation. This method is applied to an unsteady 3-D moving heat source problem. With our new MEM implementation, mesh adaptation is able to efficiently refine the grid near the heat source and coarsen the grid once the heat source passes. The savings in computational work resulting from the dynamic mesh adaptation is demonstrated by the reduction of the the number of elements used and CPU time spent. MEM and mesh adaptation, respectively, bring irregularity and dynamics to the computer memory access pattern. Hence, they provide a good way to gauge the performance of computer systems when running scientific applications whose memory access patterns are irregular and unpredictable. We select a 3-D moving heat source problem as the Unstructured Adaptive (UA) grid benchmark, a new component of the NAS Parallel

  2. [An Improved Spectral Quaternion Interpolation Method of Diffusion Tensor Imaging].

    PubMed

    Xu, Yonghong; Gao, Shangce; Hao, Xiaofei

    2016-04-01

    Diffusion tensor imaging(DTI)is a rapid development technology in recent years of magnetic resonance imaging.The diffusion tensor interpolation is a very important procedure in DTI image processing.The traditional spectral quaternion interpolation method revises the direction of the interpolation tensor and can preserve tensors anisotropy,but the method does not revise the size of tensors.The present study puts forward an improved spectral quaternion interpolation method on the basis of traditional spectral quaternion interpolation.Firstly,we decomposed diffusion tensors with the direction of tensors being represented by quaternion.Then we revised the size and direction of the tensor respectively according to different situations.Finally,we acquired the tensor of interpolation point by calculating the weighted average.We compared the improved method with the spectral quaternion method and the Log-Euclidean method by the simulation data and the real data.The results showed that the improved method could not only keep the monotonicity of the fractional anisotropy(FA)and the determinant of tensors,but also preserve the tensor anisotropy at the same time.In conclusion,the improved method provides a kind of important interpolation method for diffusion tensor image processing.

  3. Power Spectral Density Error Analysis of Spectral Subtraction Type of Speech Enhancement Methods

    NASA Astrophysics Data System (ADS)

    Händel, Peter

    2006-12-01

    A theoretical framework for analysis of speech enhancement algorithms is introduced for performance assessment of spectral subtraction type of methods. The quality of the enhanced speech is related to physical quantities of the speech and noise (such as stationarity time and spectral flatness), as well as to design variables of the noise suppressor. The derived theoretical results are compared with the outcome of subjective listening tests as well as successful design strategies, performed by independent research groups.

  4. Evaluation of Pseudo-Haptic Interactions with Soft Objects in Virtual Environments.

    PubMed

    Li, Min; Sareh, Sina; Xu, Guanghua; Ridzuan, Maisarah Binti; Luo, Shan; Xie, Jun; Wurdemann, Helge; Althoefer, Kaspar

    2016-01-01

    This paper proposes a pseudo-haptic feedback method conveying simulated soft surface stiffness information through a visual interface. The method exploits a combination of two feedback techniques, namely visual feedback of soft surface deformation and control of the indenter avatar speed, to convey stiffness information of a simulated surface of a soft object in virtual environments. The proposed method was effective in distinguishing different sizes of virtual hard nodules integrated into the simulated soft bodies. To further improve the interactive experience, the approach was extended creating a multi-point pseudo-haptic feedback system. A comparison with regards to (a) nodule detection sensitivity and (b) elapsed time as performance indicators in hard nodule detection experiments to a tablet computer incorporating vibration feedback was conducted. The multi-point pseudo-haptic interaction is shown to be more time-efficient than the single-point pseudo-haptic interaction. It is noted that multi-point pseudo-haptic feedback performs similarly well when compared to a vibration-based feedback method based on both performance measures elapsed time and nodule detection sensitivity. This proves that the proposed method can be used to convey detailed haptic information for virtual environmental tasks, even subtle ones, using either a computer mouse or a pressure sensitive device as an input device. This pseudo-haptic feedback method provides an opportunity for low-cost simulation of objects with soft surfaces and hard inclusions, as, for example, occurring in ever more realistic video games with increasing emphasis on interaction with the physical environment and minimally invasive surgery in the form of soft tissue organs with embedded cancer nodules. Hence, the method can be used in many low-budget applications where haptic sensation is required, such as surgeon training or video games, either using desktop computers or portable devices, showing reasonably high

  5. A Purkinje shift in the spectral sensitivity of grey squirrels

    PubMed Central

    Silver, Priscilla H.

    1966-01-01

    1. The light-adapted spectral sensitivity of the grey squirrel has been determined by an automated training method at a level about 6 log units above the squirrel's absolute threshold. 2. The maximum sensitivity is near 555 nm, under light-adapted conditions, compared with the dark-adapted maximum near 500 nm found by a similar method. 3. Neither the light-adapted nor the dark-adapted behavioural threshold agrees with electrophysiological findings using single flash techniques, but there is agreement with e.r.g. results obtained with sinusoidal stimuli. PMID:5972118

  6. Generalized Pseudo-Reaction Zone Model for Non-Ideal Explosives

    NASA Astrophysics Data System (ADS)

    Wescott, B. L.

    2007-12-01

    The pseudo-reaction zone model was proposed to improve engineering scale simulations with high explosives that have a slow reaction component. In this work an extension of the pseudo-reaction zone model is developed for non-ideal explosives that propagate well below the steady-planar Chapman-Jouguet velocity. A programmed burn method utilizing Detonation Shock Dynamics (DSD) and a detonation velocity dependent pseudo-reaction rate has been developed for non-ideal explosives and applied to the explosive mixture of ammonium nitrate and fuel oil (ANFO). The pseudo-reaction rate is calibrated to the experimentally obtained normal detonation velocity—shock curvature relation. Cylinder test simulations predict the proper expansion to within 1% even though significant reaction occurs as the cylinder expands.

  7. Dual Double-Wedge Pseudo-Depolarizer with Anamorphic PSF

    NASA Technical Reports Server (NTRS)

    Hill, Peter; Thompson, Patrick

    2012-01-01

    A polarized scene, which may occur at oblique illumination angles, creates a radiometric signal that varies as a function of viewing angle. One common optical component that is used to minimize such an effect is a polarization scrambler or depolarizer. As part of the CLARREO mission, the SOLARIS instrument project at Goddard Space Flight Center has developed a new class of polarization scramblers using a dual double-wedge pseudo-depolarizer that produces an anamorphic point spread function (PSF). The SOLARIS instrument uses two Wollaston type scramblers in series, each with a distinct wedge angle, to image a pseudo-depolarized scene that is free of eigenstates. Since each wedge is distinct, the scrambler is able to produce an anamorphic PSF that maintains high spatial resolution in one dimension by sacrificing the spatial resolution in the other dimension. This scrambler geometry is ideal for 1-D imagers, such as pushbroom slit spectrometers, which require high spectral resolution, high spatial resolution, and low sensitivity to polarized light. Moreover, the geometry is applicable to a wide range of scientific instruments that require both high SNR (signal-to-noise ratio) and low sensitivity to polarized scenes

  8. Pseudo progression identification of glioblastoma with dictionary learning.

    PubMed

    Zhang, Jian; Yu, Hengyong; Qian, Xiaohua; Liu, Keqin; Tan, Hua; Yang, Tielin; Wang, Maode; Li, King Chuen; Chan, Michael D; Debinski, Waldemar; Paulsson, Anna; Wang, Ge; Zhou, Xiaobo

    2016-06-01

    Although the use of temozolomide in chemoradiotherapy is effective, the challenging clinical problem of pseudo progression has been raised in brain tumor treatment. This study aims to distinguish pseudo progression from true progression. Between 2000 and 2012, a total of 161 patients with glioblastoma multiforme (GBM) were treated with chemoradiotherapy at our hospital. Among the patients, 79 had their diffusion tensor imaging (DTI) data acquired at the earliest diagnosed date of pseudo progression or true progression, and 23 had both DTI data and genomic data. Clinical records of all patients were kept in good condition. Volumetric fractional anisotropy (FA) images obtained from the DTI data were decomposed into a sequence of sparse representations. Then, a feature selection algorithm was applied to extract the critical features from the feature matrix to reduce the size of the feature matrix and to improve the classification accuracy. The proposed approach was validated using the 79 samples with clinical DTI data. Satisfactory results were obtained under different experimental conditions. The area under the receiver operating characteristic (ROC) curve (AUC) was 0.87 for a given dictionary with 1024 atoms. For the subgroup of 23 samples, genomics data analysis was also performed. Results implied further perspective on pseudo progression classification. The proposed method can determine pseudo progression and true progression with improved accuracy. Laboring segmentation is no longer necessary because this skillfully designed method is not sensitive to tumor location. Copyright © 2016 Elsevier Ltd. All rights reserved.

  9. Spectrally Adaptable Compressive Sensing Imaging System

    DTIC Science & Technology

    2014-05-01

    signal recovering [?, ?]. The time-varying coded apertures can be implemented using micro-piezo motors [?] or through the use of Digital Micromirror ...feasibility of this testbed by developing a Digital- Micromirror -Device-based Snapshot Spectral Imaging (DMD-SSI) system, which implements CS measurement...Y. Wu, I. O. Mirza, G. R. Arce, and D. W. Prather, ”Development of a digital- micromirror - device- based multishot snapshot spectral imaging

  10. Perceptual “vowel spaces” of cochlear implant users: Implications for the study of auditory adaptation to spectral shift

    PubMed Central

    Harnsberger, James D.; Svirsky, Mario A.; Kaiser, Adam R.; Pisoni, David B.; Wright, Richard; Meyer, Ted A.

    2012-01-01

    Cochlear implant (CI) users differ in their ability to perceive and recognize speech sounds. Two possible reasons for such individual differences may lie in their ability to discriminate formant frequencies or to adapt to the spectrally shifted information presented by cochlear implants, a basalward shift related to the implant’s depth of insertion in the cochlea. In the present study, we examined these two alternatives using a method-of-adjustment (MOA) procedure with 330 synthetic vowel stimuli varying in F1 and F2 that were arranged in a two-dimensional grid. Subjects were asked to label the synthetic stimuli that matched ten monophthongal vowels in visually presented words. Subjects then provided goodness ratings for the stimuli they had chosen. The subjects’ responses to all ten vowels were used to construct individual perceptual “vowel spaces.” If CI users fail to adapt completely to the basalward spectral shift, then the formant frequencies of their vowel categories should be shifted lower in both F1 and F2. However, with one exception, no systematic shifts were observed in the vowel spaces of CI users. Instead, the vowel spaces differed from one another in the relative size of their vowel categories. The results suggest that differences in formant frequency discrimination may account for the individual differences in vowel perception observed in cochlear implant users. PMID:11386565

  11. Compressive Spectral Method for the Simulation of the Nonlinear Gravity Waves

    PubMed Central

    Bayındır, Cihan

    2016-01-01

    In this paper an approach for decreasing the computational effort required for the spectral simulations of the fully nonlinear ocean waves is introduced. The proposed approach utilizes the compressive sampling algorithm and depends on the idea of using a smaller number of spectral components compared to the classical spectral method. After performing the time integration with a smaller number of spectral components and using the compressive sampling technique, it is shown that the ocean wave field can be reconstructed with a significantly better efficiency compared to the classical spectral method. For the sparse ocean wave model in the frequency domain the fully nonlinear ocean waves with Jonswap spectrum is considered. By implementation of a high-order spectral method it is shown that the proposed methodology can simulate the linear and the fully nonlinear ocean waves with negligible difference in the accuracy and with a great efficiency by reducing the computation time significantly especially for large time evolutions. PMID:26911357

  12. Apparatus, Method, and Computer Program for a Resolution-Enhanced Pseudo-Noise Code Technique

    NASA Technical Reports Server (NTRS)

    Li, Steven X. (Inventor)

    2015-01-01

    An apparatus, method, and computer program for a resolution enhanced pseudo-noise coding technique for 3D imaging is provided. In one embodiment, a pattern generator may generate a plurality of unique patterns for a return to zero signal. A plurality of laser diodes may be configured such that each laser diode transmits the return to zero signal to an object. Each of the return to zero signal includes one unique pattern from the plurality of unique patterns to distinguish each of the transmitted return to zero signals from one another.

  13. A novel edge-preserving nonnegative matrix factorization method for spectral unmixing

    NASA Astrophysics Data System (ADS)

    Bao, Wenxing; Ma, Ruishi

    2015-12-01

    Spectral unmixing technique is one of the key techniques to identify and classify the material in the hyperspectral image processing. A novel robust spectral unmixing method based on nonnegative matrix factorization(NMF) is presented in this paper. This paper used an edge-preserving function as hypersurface cost function to minimize the nonnegative matrix factorization. To minimize the hypersurface cost function, we constructed the updating functions for signature matrix of end-members and abundance fraction respectively. The two functions are updated alternatively. For evaluation purpose, synthetic data and real data have been used in this paper. Synthetic data is used based on end-members from USGS digital spectral library. AVIRIS Cuprite dataset have been used as real data. The spectral angle distance (SAD) and abundance angle distance(AAD) have been used in this research for assessment the performance of proposed method. The experimental results show that this method can obtain more ideal results and good accuracy for spectral unmixing than present methods.

  14. Adaptive and automatic red blood cell counting method based on microscopic hyperspectral imaging technology

    NASA Astrophysics Data System (ADS)

    Liu, Xi; Zhou, Mei; Qiu, Song; Sun, Li; Liu, Hongying; Li, Qingli; Wang, Yiting

    2017-12-01

    Red blood cell counting, as a routine examination, plays an important role in medical diagnoses. Although automated hematology analyzers are widely used, manual microscopic examination by a hematologist or pathologist is still unavoidable, which is time-consuming and error-prone. This paper proposes a full-automatic red blood cell counting method which is based on microscopic hyperspectral imaging of blood smears and combines spatial and spectral information to achieve high precision. The acquired hyperspectral image data of the blood smear in the visible and near-infrared spectral range are firstly preprocessed, and then a quadratic blind linear unmixing algorithm is used to get endmember abundance images. Based on mathematical morphological operation and an adaptive Otsu’s method, a binaryzation process is performed on the abundance images. Finally, the connected component labeling algorithm with magnification-based parameter setting is applied to automatically select the binary images of red blood cell cytoplasm. Experimental results show that the proposed method can perform well and has potential for clinical applications.

  15. Adaptiveness in monotone pseudo-Boolean optimization and stochastic neural computation.

    PubMed

    Grossi, Giuliano

    2009-08-01

    Hopfield neural network (HNN) is a nonlinear computational model successfully applied in finding near-optimal solutions of several difficult combinatorial problems. In many cases, the network energy function is obtained through a learning procedure so that its minima are states falling into a proper subspace (feasible region) of the search space. However, because of the network nonlinearity, a number of undesirable local energy minima emerge from the learning procedure, significantly effecting the network performance. In the neural model analyzed here, we combine both a penalty and a stochastic process in order to enhance the performance of a binary HNN. The penalty strategy allows us to gradually lead the search towards states representing feasible solutions, so avoiding oscillatory behaviors or asymptotically instable convergence. Presence of stochastic dynamics potentially prevents the network to fall into shallow local minima of the energy function, i.e., quite far from global optimum. Hence, for a given fixed network topology, the desired final distribution on the states can be reached by carefully modulating such process. The model uses pseudo-Boolean functions both to express problem constraints and cost function; a combination of these two functions is then interpreted as energy of the neural network. A wide variety of NP-hard problems fall in the class of problems that can be solved by the model at hand, particularly those having a monotonic quadratic pseudo-Boolean function as constraint function. That is, functions easily derived by closed algebraic expressions representing the constraint structure and easy (polynomial time) to maximize. We show the asymptotic convergence properties of this model characterizing its state space distribution at thermal equilibrium in terms of Markov chain and give evidence of its ability to find high quality solutions on benchmarks and randomly generated instances of two specific problems taken from the computational graph

  16. Advanced spectral methods for climatic time series

    USGS Publications Warehouse

    Ghil, M.; Allen, M.R.; Dettinger, M.D.; Ide, K.; Kondrashov, D.; Mann, M.E.; Robertson, A.W.; Saunders, A.; Tian, Y.; Varadi, F.; Yiou, P.

    2002-01-01

    The analysis of univariate or multivariate time series provides crucial information to describe, understand, and predict climatic variability. The discovery and implementation of a number of novel methods for extracting useful information from time series has recently revitalized this classical field of study. Considerable progress has also been made in interpreting the information so obtained in terms of dynamical systems theory. In this review we describe the connections between time series analysis and nonlinear dynamics, discuss signal- to-noise enhancement, and present some of the novel methods for spectral analysis. The various steps, as well as the advantages and disadvantages of these methods, are illustrated by their application to an important climatic time series, the Southern Oscillation Index. This index captures major features of interannual climate variability and is used extensively in its prediction. Regional and global sea surface temperature data sets are used to illustrate multivariate spectral methods. Open questions and further prospects conclude the review.

  17. Spectral methods and their implementation to solution of aerodynamic and fluid mechanic problems

    NASA Technical Reports Server (NTRS)

    Streett, C. L.

    1987-01-01

    Fundamental concepts underlying spectral collocation methods, especially pertaining to their use in the solution of partial differential equations, are outlined. Theoretical accuracy results are reviewed and compared with results from test problems. A number of practical aspects of the construction and use of spectral methods are detailed, along with several solution schemes which have found utility in applications of spectral methods to practical problems. Results from a few of the successful applications of spectral methods to problems of aerodynamic and fluid mechanic interest are then outlined, followed by a discussion of the problem areas in spectral methods and the current research under way to overcome these difficulties.

  18. Extended depth of focus adaptive optics spectral domain optical coherence tomography

    PubMed Central

    Sasaki, Kazuhiro; Kurokawa, Kazuhiro; Makita, Shuichi; Yasuno, Yoshiaki

    2012-01-01

    We present an adaptive optics spectral domain optical coherence tomography (AO-SDOCT) with a long focal range by active phase modulation of the pupil. A long focal range is achieved by introducing AO-controlled third-order spherical aberration (SA). The property of SA and its effects on focal range are investigated in detail using the Huygens-Fresnel principle, beam profile measurement and OCT imaging of a phantom. The results indicate that the focal range is extended by applying SA, and the direction of extension can be controlled by the sign of applied SA. Finally, we demonstrated in vivo human retinal imaging by altering the applied SA. PMID:23082278

  19. Extended depth of focus adaptive optics spectral domain optical coherence tomography.

    PubMed

    Sasaki, Kazuhiro; Kurokawa, Kazuhiro; Makita, Shuichi; Yasuno, Yoshiaki

    2012-10-01

    We present an adaptive optics spectral domain optical coherence tomography (AO-SDOCT) with a long focal range by active phase modulation of the pupil. A long focal range is achieved by introducing AO-controlled third-order spherical aberration (SA). The property of SA and its effects on focal range are investigated in detail using the Huygens-Fresnel principle, beam profile measurement and OCT imaging of a phantom. The results indicate that the focal range is extended by applying SA, and the direction of extension can be controlled by the sign of applied SA. Finally, we demonstrated in vivo human retinal imaging by altering the applied SA.

  20. PSEUDO-CODEWORD LANDSCAPE

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    CHERTKOV, MICHAEL; STEPANOV, MIKHAIL

    2007-01-10

    The authors discuss performance of Low-Density-Parity-Check (LDPC) codes decoded by Linear Programming (LP) decoding at moderate and large Signal-to-Noise-Ratios (SNR). Frame-Error-Rate (FER) dependence on SNR and the noise space landscape of the coding/decoding scheme are analyzed by a combination of the previously introduced instanton/pseudo-codeword-search method and a new 'dendro' trick. To reduce complexity of the LP decoding for a code with high-degree checks, {ge} 5, they introduce its dendro-LDPC counterpart, that is the code performing identifically to the original one under Maximum-A-Posteriori (MAP) decoding but having reduced (down to three) check connectivity degree. Analyzing number of popular LDPC codes andmore » their dendro versions performing over the Additive-White-Gaussian-Noise (AWGN) channel, they observed two qualitatively different regimes: (i) error-floor sets early, at relatively low SNR, and (ii) FER decays with SNR increase faster at moderate SNR than at the largest SNR. They explain these regimes in terms of the pseudo-codeword spectra of the codes.« less

  1. A space-time lower-upper symmetric Gauss-Seidel scheme for the time-spectral method

    NASA Astrophysics Data System (ADS)

    Zhan, Lei; Xiong, Juntao; Liu, Feng

    2016-05-01

    The time-spectral method (TSM) offers the advantage of increased order of accuracy compared to methods using finite-difference in time for periodic unsteady flow problems. Explicit Runge-Kutta pseudo-time marching and implicit schemes have been developed to solve iteratively the space-time coupled nonlinear equations resulting from TSM. Convergence of the explicit schemes is slow because of the stringent time-step limit. Many implicit methods have been developed for TSM. Their computational efficiency is, however, still limited in practice because of delayed implicit temporal coupling, multiple iterative loops, costly matrix operations, or lack of strong diagonal dominance of the implicit operator matrix. To overcome these shortcomings, an efficient space-time lower-upper symmetric Gauss-Seidel (ST-LU-SGS) implicit scheme with multigrid acceleration is presented. In this scheme, the implicit temporal coupling term is split as one additional dimension of space in the LU-SGS sweeps. To improve numerical stability for periodic flows with high frequency, a modification to the ST-LU-SGS scheme is proposed. Numerical results show that fast convergence is achieved using large or even infinite Courant-Friedrichs-Lewy (CFL) numbers for unsteady flow problems with moderately high frequency and with the use of moderately high numbers of time intervals. The ST-LU-SGS implicit scheme is also found to work well in calculating periodic flow problems where the frequency is not known a priori and needed to be determined by using a combined Fourier analysis and gradient-based search algorithm.

  2. Inexact adaptive Newton methods

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bertiger, W.I.; Kelsey, F.J.

    1985-02-01

    The Inexact Adaptive Newton method (IAN) is a modification of the Adaptive Implicit Method/sup 1/ (AIM) with improved Newton convergence. Both methods simplify the Jacobian at each time step by zeroing coefficients in regions where saturations are changing slowly. The methods differ in how the diagonal block terms are treated. On test problems with up to 3,000 cells, IAN consistently saves approximately 30% of the CPU time when compared to the fully implicit method. AIM shows similar savings on some problems, but takes as much CPU time as fully implicit on other test problems due to poor Newton convergence.

  3. Pseudo-point transport technique: a new method for solving the Boltzmann transport equation in media with highly fluctuating cross sections

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nakhai, B.

    A new method for solving radiation transport problems is presented. The heart of the technique is a new cross section processing procedure for the calculation of group-to-point and point-to-group cross sections sets. The method is ideally suited for problems which involve media with highly fluctuating cross sections, where the results of the traditional multigroup calculations are beclouded by the group averaging procedures employed. Extensive computational efforts, which would be required to evaluate double integrals in the multigroup treatment numerically, prohibit iteration to optimize the energy boundaries. On the other hand, use of point-to-point techniques (as in the stochastic technique) ismore » often prohibitively expensive due to the large computer storage requirement. The pseudo-point code is a hybrid of the two aforementioned methods (group-to-group and point-to-point) - hence the name pseudo-point - that reduces the computational efforts of the former and the large core requirements of the latter. The pseudo-point code generates the group-to-point or the point-to-group transfer matrices, and can be coupled with the existing transport codes to calculate pointwise energy-dependent fluxes. This approach yields much more detail than is available from the conventional energy-group treatments. Due to the speed of this code, several iterations could be performed (in affordable computing efforts) to optimize the energy boundaries and the weighting functions. The pseudo-point technique is demonstrated by solving six problems, each depicting a certain aspect of the technique. The results are presented as flux vs energy at various spatial intervals. The sensitivity of the technique to the energy grid and the savings in computational effort are clearly demonstrated.« less

  4. The spectral cell method in nonlinear earthquake modeling

    NASA Astrophysics Data System (ADS)

    Giraldo, Daniel; Restrepo, Doriam

    2017-12-01

    This study examines the applicability of the spectral cell method (SCM) to compute the nonlinear earthquake response of complex basins. SCM combines fictitious-domain concepts with the spectral-version of the finite element method to solve the wave equations in heterogeneous geophysical domains. Nonlinear behavior is considered by implementing the Mohr-Coulomb and Drucker-Prager yielding criteria. We illustrate the performance of SCM with numerical examples of nonlinear basins exhibiting physically and computationally challenging conditions. The numerical experiments are benchmarked with results from overkill solutions, and using MIDAS GTS NX, a finite element software for geotechnical applications. Our findings show good agreement between the two sets of results. Traditional spectral elements implementations allow points per wavelength as low as PPW = 4.5 for high-order polynomials. Our findings show that in the presence of nonlinearity, high-order polynomials (p ≥ 3) require mesh resolutions above of PPW ≥ 10 to ensure displacement errors below 10%.

  5. Method for estimating effects of unknown correlations in spectral irradiance data on uncertainties of spectrally integrated colorimetric quantities

    NASA Astrophysics Data System (ADS)

    Kärhä, Petri; Vaskuri, Anna; Mäntynen, Henrik; Mikkonen, Nikke; Ikonen, Erkki

    2017-08-01

    Spectral irradiance data are often used to calculate colorimetric properties, such as color coordinates and color temperatures of light sources by integration. The spectral data may contain unknown correlations that should be accounted for in the uncertainty estimation. We propose a new method for estimating uncertainties in such cases. The method goes through all possible scenarios of deviations using Monte Carlo analysis. Varying spectral error functions are produced by combining spectral base functions, and the distorted spectra are used to calculate the colorimetric quantities. Standard deviations of the colorimetric quantities at different scenarios give uncertainties assuming no correlations, uncertainties assuming full correlation, and uncertainties for an unfavorable case of unknown correlations, which turn out to be a significant source of uncertainty. With 1% standard uncertainty in spectral irradiance, the expanded uncertainty of the correlated color temperature of a source corresponding to the CIE Standard Illuminant A may reach as high as 37.2 K in unfavorable conditions, when calculations assuming full correlation give zero uncertainty, and calculations assuming no correlations yield the expanded uncertainties of 5.6 K and 12.1 K, with wavelength steps of 1 nm and 5 nm used in spectral integrations, respectively. We also show that there is an absolute limit of 60.2 K in the error of the correlated color temperature for Standard Illuminant A when assuming 1% standard uncertainty in the spectral irradiance. A comparison of our uncorrelated uncertainties with those obtained using analytical methods by other research groups shows good agreement. We re-estimated the uncertainties for the colorimetric properties of our 1 kW photometric standard lamps using the new method. The revised uncertainty of color temperature is a factor of 2.5 higher than the uncertainty assuming no correlations.

  6. High order spectral difference lattice Boltzmann method for incompressible hydrodynamics

    NASA Astrophysics Data System (ADS)

    Li, Weidong

    2017-09-01

    This work presents a lattice Boltzmann equation (LBE) based high order spectral difference method for incompressible flows. In the present method, the spectral difference (SD) method is adopted to discretize the convection and collision term of the LBE to obtain high order (≥3) accuracy. Because the SD scheme represents the solution as cell local polynomials and the solution polynomials have good tensor-product property, the present spectral difference lattice Boltzmann method (SD-LBM) can be implemented on arbitrary unstructured quadrilateral meshes for effective and efficient treatment of complex geometries. Thanks to only first oder PDEs involved in the LBE, no special techniques, such as hybridizable discontinuous Galerkin method (HDG), local discontinuous Galerkin method (LDG) and so on, are needed to discrete diffusion term, and thus, it simplifies the algorithm and implementation of the high order spectral difference method for simulating viscous flows. The proposed SD-LBM is validated with four incompressible flow benchmarks in two-dimensions: (a) the Poiseuille flow driven by a constant body force; (b) the lid-driven cavity flow without singularity at the two top corners-Burggraf flow; and (c) the unsteady Taylor-Green vortex flow; (d) the Blasius boundary-layer flow past a flat plate. Computational results are compared with analytical solutions of these cases and convergence studies of these cases are also given. The designed accuracy of the proposed SD-LBM is clearly verified.

  7. Projection of Summer Climate on Tokyo Metropolitan Area using Pseudo Global Warming Method

    NASA Astrophysics Data System (ADS)

    Adachi, S. A.; Kimura, F.; Kusaka, H.; Hara, M.

    2010-12-01

    Recent surface air temperature observations in most of urban areas show the remarkable increasing trend affected by the global warming and the heat island effects. There are many populous areas in Japan. In such areas, the effects of land-use change and urbanization on the local climate are not negligible (Fujibe, 2010). The heat stress for citizen there is concerned to swell moreover in the future. Therefore, spatially detailed climate projection is required for making adaptation and mitigation plans. This study focuses on the Tokyo metropolitan area (TMA) in summer and aims to estimate the local climate change over the TMA in 2070s using a regional climate model. The Regional Atmospheric Modeling System (RAMS) was used for downscaling. A single layer urban canopy model (Kusaka et al., 2001) is built into RAMS as a parameterization expressing the features of urban surface. We performed two experiments for estimating present and future climate. In the present climate simulation, the initial and boundary conditions for RAMS are provided from the JRA-25/JCDAS. On the other hand, the Pseudo Global Warming (PGW) method (Sato et al., 2007) is applied to estimate the future climate, instead of the conventional dynamical downscaling method. The PGW method is expected to reduce the model biases in the future projection estimated by Atmosphere-Ocean General Circulation Models (AOGCM). The boundary conditions used in the PGW method is given by the PGW data, which are obtained by adding the climate monthly difference between 1990s and 2070s estimated by AOGCMs to the 6-hourly reanalysis data. In addition, the uncertainty in the regional climate projection depending on the AOGCM projections is estimated from additional downscaling experiments using the different PGW data obtained from five AOGCMs. Acknowledgment: This work was supported by the Global Environment Research Fund (S-5-3) of the Ministry of the Environment, Japan. References: 1. Fujibe, F., Int. J. Climatol., doi

  8. Preconditioned conjugate residual methods for the solution of spectral equations

    NASA Technical Reports Server (NTRS)

    Wong, Y. S.; Zang, T. A.; Hussaini, M. Y.

    1986-01-01

    Conjugate residual methods for the solution of spectral equations are described. An inexact finite-difference operator is introduced as a preconditioner in the iterative procedures. Application of these techniques is limited to problems for which the symmetric part of the coefficient matrix is positive definite. Although the spectral equation is a very ill-conditioned and full matrix problem, the computational effort of the present iterative methods for solving such a system is comparable to that for the sparse matrix equations obtained from the application of either finite-difference or finite-element methods to the same problems. Numerical experiments are shown for a self-adjoint elliptic partial differential equation with Dirichlet boundary conditions, and comparison with other solution procedures for spectral equations is presented.

  9. Application of the Spectral Element Method to Acoustic Radiation

    NASA Technical Reports Server (NTRS)

    Doyle, James F.; Rizzi, Stephen A. (Technical Monitor)

    2000-01-01

    This report summarizes research to develop a capability for analysis of interior noise in enclosed structures when acoustically excited by an external random source. Of particular interest was the application to the study of noise and vibration transmission in thin-walled structures as typified by aircraft fuselages. Three related topics are focused upon. The first concerns the development of a curved frame spectral element, the second shows how the spectral element method for wave propagation in folded plate structures is extended to problems involving curved segmented plates. These are of significance because by combining these curved spectral elements with previously presented flat spectral elements, the dynamic response of geometrically complex structures can be determined. The third topic shows how spectral elements, which incorporate the effect of fluid loading on the structure, are developed for analyzing acoustic radiation from dynamically loaded extended plates.

  10. A novel approach to transforming a non-targeted metabolic profiling method to a pseudo-targeted method using the retention time locking gas chromatography/mass spectrometry-selected ions monitoring.

    PubMed

    Li, Yong; Ruan, Qiang; Li, Yanli; Ye, Guozhu; Lu, Xin; Lin, Xiaohui; Xu, Guowang

    2012-09-14

    Non-targeted metabolic profiling is the most widely used method for metabolomics. In this paper, a novel approach was established to transform a non-targeted metabolic profiling method to a pseudo-targeted method using the retention time locking gas chromatography/mass spectrometry-selected ion monitoring (RTL-GC/MS-SIM). To achieve this transformation, an algorithm based on the automated mass spectral deconvolution and identification system (AMDIS), GC/MS raw data and a bi-Gaussian chromatographic peak model was developed. The established GC/MS-SIM method was compared with GC/MS-full scan (the total ion current and extracted ion current, TIC and EIC) methods, it was found that for a typical tobacco leaf extract, 93% components had their relative standard deviations (RSDs) of relative peak areas less than 20% by the SIM method, while 88% by the EIC method and 81% by the TIC method. 47.3% components had their linear correlation coefficient higher than 0.99, compared with 5.0% by the EIC and 6.2% by TIC methods. Multivariate analysis showed the pooled quality control samples clustered more tightly using the developed method than using GC/MS-full scan methods, indicating a better data quality. With the analysis of the variance of the tobacco samples from three different planting regions, 167 differential components (p<0.05) were screened out using the RTL-GC/MS-SIM method, but 151 and 131 by the EIC and TIC methods, respectively. The results show that the developed method not only has a higher sensitivity, better linearity and data quality, but also does not need complicated peak alignment among different samples. It is especially suitable for the screening of differential components in the metabolic profiling investigation. Copyright © 2012 Elsevier B.V. All rights reserved.

  11. Tensor-based Dictionary Learning for Spectral CT Reconstruction

    PubMed Central

    Zhang, Yanbo; Wang, Ge

    2016-01-01

    Spectral computed tomography (CT) produces an energy-discriminative attenuation map of an object, extending a conventional image volume with a spectral dimension. In spectral CT, an image can be sparsely represented in each of multiple energy channels, and are highly correlated among energy channels. According to this characteristics, we propose a tensor-based dictionary learning method for spectral CT reconstruction. In our method, tensor patches are extracted from an image tensor, which is reconstructed using the filtered backprojection (FBP), to form a training dataset. With the Candecomp/Parafac decomposition, a tensor-based dictionary is trained, in which each atom is a rank-one tensor. Then, the trained dictionary is used to sparsely represent image tensor patches during an iterative reconstruction process, and the alternating minimization scheme is adapted for optimization. The effectiveness of our proposed method is validated with both numerically simulated and real preclinical mouse datasets. The results demonstrate that the proposed tensor-based method generally produces superior image quality, and leads to more accurate material decomposition than the currently popular popular methods. PMID:27541628

  12. Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order.

    PubMed

    Aron, Miles; Browning, Richard; Carugo, Dario; Sezgin, Erdinc; Bernardino de la Serna, Jorge; Eggeling, Christian; Stride, Eleanor

    2017-05-12

    Spectral imaging with polarity-sensitive fluorescent probes enables the quantification of cell and model membrane physical properties, including local hydration, fluidity, and lateral lipid packing, usually characterized by the generalized polarization (GP) parameter. With the development of commercial microscopes equipped with spectral detectors, spectral imaging has become a convenient and powerful technique for measuring GP and other membrane properties. The existing tools for spectral image processing, however, are insufficient for processing the large data sets afforded by this technological advancement, and are unsuitable for processing images acquired with rapidly internalized fluorescent probes. Here we present a MATLAB spectral imaging toolbox with the aim of overcoming these limitations. In addition to common operations, such as the calculation of distributions of GP values, generation of pseudo-colored GP maps, and spectral analysis, a key highlight of this tool is reliable membrane segmentation for probes that are rapidly internalized. Furthermore, handling for hyperstacks, 3D reconstruction and batch processing facilitates analysis of data sets generated by time series, z-stack, and area scan microscope operations. Finally, the object size distribution is determined, which can provide insight into the mechanisms underlying changes in membrane properties and is desirable for e.g. studies involving model membranes and surfactant coated particles. Analysis is demonstrated for cell membranes, cell-derived vesicles, model membranes, and microbubbles with environmentally-sensitive probes Laurdan, carboxyl-modified Laurdan (C-Laurdan), Di-4-ANEPPDHQ, and Di-4-AN(F)EPPTEA (FE), for quantification of the local lateral density of lipids or lipid packing. The Spectral Imaging Toolbox is a powerful tool for the segmentation and processing of large spectral imaging datasets with a reliable method for membrane segmentation and no ability in programming required. The

  13. A High-Order Finite Spectral Volume Method for Conservation Laws on Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Wang, Z. J.; Liu, Yen; Kwak, Dochan (Technical Monitor)

    2001-01-01

    A time accurate, high-order, conservative, yet efficient method named Finite Spectral Volume (FSV) is developed for conservation laws on unstructured grids. The concept of a 'spectral volume' is introduced to achieve high-order accuracy in an efficient manner similar to spectral element and multi-domain spectral methods. In addition, each spectral volume is further sub-divided into control volumes (CVs), and cell-averaged data from these control volumes is used to reconstruct a high-order approximation in the spectral volume. Riemann solvers are used to compute the fluxes at spectral volume boundaries. Then cell-averaged state variables in the control volumes are updated independently. Furthermore, TVD (Total Variation Diminishing) and TVB (Total Variation Bounded) limiters are introduced in the FSV method to remove/reduce spurious oscillations near discontinuities. A very desirable feature of the FSV method is that the reconstruction is carried out only once, and analytically, and is the same for all cells of the same type, and that the reconstruction stencil is always non-singular, in contrast to the memory and CPU-intensive reconstruction in a high-order finite volume (FV) method. Discussions are made concerning why the FSV method is significantly more efficient than high-order finite volume and the Discontinuous Galerkin (DG) methods. Fundamental properties of the FSV method are studied and high-order accuracy is demonstrated for several model problems with and without discontinuities.

  14. Advances in Adaptive Control Methods

    NASA Technical Reports Server (NTRS)

    Nguyen, Nhan

    2009-01-01

    This poster presentation describes recent advances in adaptive control technology developed by NASA. Optimal Control Modification is a novel adaptive law that can improve performance and robustness of adaptive control systems. A new technique has been developed to provide an analytical method for computing time delay stability margin for adaptive control systems.

  15. Discontinuous Spectral Difference Method for Conservation Laws on Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Liu, Yen; Vinokur, Marcel; Wang, Z. J.

    2004-01-01

    A new, high-order, conservative, and efficient method for conservation laws on unstructured grids is developed. The concept of discontinuous and high-order local representations to achieve conservation and high accuracy is utilized in a manner similar to the Discontinuous Galerkin (DG) and the Spectral Volume (SV) methods, but while these methods are based on the integrated forms of the equations, the new method is based on the differential form to attain a simpler formulation and higher efficiency. A discussion on the Discontinuous Spectral Difference (SD) Method, locations of the unknowns and flux points and numerical results are also presented.

  16. A Real-Time Infrared Ultra-Spectral Signature Classification Method via Spatial Pyramid Matching

    PubMed Central

    Mei, Xiaoguang; Ma, Yong; Li, Chang; Fan, Fan; Huang, Jun; Ma, Jiayi

    2015-01-01

    The state-of-the-art ultra-spectral sensor technology brings new hope for high precision applications due to its high spectral resolution. However, it also comes with new challenges, such as the high data dimension and noise problems. In this paper, we propose a real-time method for infrared ultra-spectral signature classification via spatial pyramid matching (SPM), which includes two aspects. First, we introduce an infrared ultra-spectral signature similarity measure method via SPM, which is the foundation of the matching-based classification method. Second, we propose the classification method with reference spectral libraries, which utilizes the SPM-based similarity for the real-time infrared ultra-spectral signature classification with robustness performance. Specifically, instead of matching with each spectrum in the spectral library, our method is based on feature matching, which includes a feature library-generating phase. We calculate the SPM-based similarity between the feature of the spectrum and that of each spectrum of the reference feature library, then take the class index of the corresponding spectrum having the maximum similarity as the final result. Experimental comparisons on two publicly-available datasets demonstrate that the proposed method effectively improves the real-time classification performance and robustness to noise. PMID:26205263

  17. Spectral methods in edge-diffraction theories

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Arnold, J.M.

    Spectral methods for the construction of uniform asymptotic representations of the field diffracted by an aperture in a plane screen are reviewed. These are separated into contrasting approaches, roughly described as physical and geometrical. It is concluded that the geometrical methods provide a direct route to the construction of uniform representations that are formally identical to the equivalent-edge-current concept. Some interpretive and analytical difficulties that complicate the physical methods of obtaining uniform representations are analyzed. Spectral synthesis proceeds directly from the ray geometry and diffraction coefficients, without any intervening current representation, and the representation is uniform at shadow boundaries andmore » caustics of the diffracted field. The physical theory of diffraction postulates currents on the diffracting screen that give rise to the diffracted field. The difficulties encountered in evaluating the current integrals are throughly examined, and it is concluded that the additional data provided by the physical theory of diffraction (diffraction coefficients off the Keller diffraction cone) are not actually required for obtaining uniform asymptotics at the leading order. A new diffraction representation that generalizes to arbitrary plane-convex apertures a formula given by Knott and Senior [Proc. IEEE 62, 1468 (1974)] for circular apertures is deduced. 34 refs., 1 fig.« less

  18. A Method for Determining Pseudo-measurement State Values for Topology Observability of State Estimation in Power Systems

    NASA Astrophysics Data System (ADS)

    Urano, Shoichi; Mori, Hiroyuki

    This paper proposes a new technique for determining of state values in power systems. Recently, it is useful for carrying out state estimation with data of PMU (Phasor Measurement Unit). The authors have developed a method for determining state values with artificial neural network (ANN) considering topology observability in power systems. ANN has advantage to approximate nonlinear functions with high precision. The method evaluates pseudo-measurement state values of the data which are lost in power systems. The method is successfully applied to the IEEE 14-bus system.

  19. Finite and spectral cell method for wave propagation in heterogeneous materials

    NASA Astrophysics Data System (ADS)

    Joulaian, Meysam; Duczek, Sascha; Gabbert, Ulrich; Düster, Alexander

    2014-09-01

    In the current paper we present a fast, reliable technique for simulating wave propagation in complex structures made of heterogeneous materials. The proposed approach, the spectral cell method, is a combination of the finite cell method and the spectral element method that significantly lowers preprocessing and computational expenditure. The spectral cell method takes advantage of explicit time-integration schemes coupled with a diagonal mass matrix to reduce the time spent on solving the equation system. By employing a fictitious domain approach, this method also helps to eliminate some of the difficulties associated with mesh generation. Besides introducing a proper, specific mass lumping technique, we also study the performance of the low-order and high-order versions of this approach based on several numerical examples. Our results show that the high-order version of the spectral cell method together requires less memory storage and less CPU time than other possible versions, when combined simultaneously with explicit time-integration algorithms. Moreover, as the implementation of the proposed method in available finite element programs is straightforward, these properties turn the method into a viable tool for practical applications such as structural health monitoring [1-3], quantitative ultrasound applications [4], or the active control of vibrations and noise [5, 6].

  20. Seismic spectral decomposition and analysis based on Wigner-Ville distribution for sandstone reservoir characterization in West Sichuan depression

    NASA Astrophysics Data System (ADS)

    Wu, Xiaoyang; Liu, Tianyou

    2010-06-01

    Reflections from a hydrocarbon-saturated zone are generally expected to have a tendency to be low frequency. Previous work has shown the application of seismic spectral decomposition for low-frequency shadow detection. In this paper, we further analyse the characteristics of spectral amplitude in fractured sandstone reservoirs with different fluid saturations using the Wigner-Ville distribution (WVD)-based method. We give a description of the geometric structure of cross-terms due to the bilinear nature of WVD and eliminate cross-terms using smoothed pseudo-WVD (SPWVD) with time- and frequency-independent Gaussian kernels as smoothing windows. SPWVD is finally applied to seismic data from West Sichuan depression. We focus our study on the comparison of SPWVD spectral amplitudes resulting from different fluid contents. It shows that prolific gas reservoirs feature higher peak spectral amplitude at higher peak frequency, which attenuate faster than low-quality gas reservoirs and dry or wet reservoirs. This can be regarded as a spectral attenuation signature for future exploration in the study area.

  1. A Spectral Method for Color Quantitation of a Protein Drug Solution.

    PubMed

    Swartz, Trevor E; Yin, Jian; Patapoff, Thomas W; Horst, Travis; Skieresz, Susan M; Leggett, Gordon; Morgan, Charles J; Rahimi, Kimia; Marhoul, Joseph; Kabakoff, Bruce

    2016-01-01

    Color is an important quality attribute for biotherapeutics. In the biotechnology industry, a visual method is most commonly utilized for color characterization of liquid drug protein solutions. The color testing method is used for both batch release and on stability testing for quality control. Using that method, an analyst visually determines the color of the sample by choosing the closest matching European Pharmacopeia reference color solution. The requirement to judge the best match makes it a subjective method. Furthermore, the visual method does not capture data on hue or chroma that would allow for improved product characterization and the ability to detect subtle differences between samples. To overcome these challenges, we describe a quantitative method for color determination that greatly reduces the variability in measuring color and allows for a more precise understanding of color differences. Following color industry standards established by International Commission on Illumination, this method converts a protein solution's visible absorption spectra to L*a*b* color space. Color matching is achieved within the L*a*b* color space, a practice that is already widely used in other industries. The work performed here is to facilitate the adoption and transition for the traditional visual assessment method to a quantitative spectral method. We describe here the algorithm used such that the quantitative spectral method correlates with the currently used visual method. In addition, we provide the L*a*b* values for the European Pharmacopeia reference color solutions required for the quantitative method. We have determined these L*a*b* values by gravimetrically preparing and measuring multiple lots of the reference color solutions. We demonstrate that the visual assessment and the quantitative spectral method are comparable using both low- and high-concentration antibody solutions and solutions with varying turbidity. In the biotechnology industry, a visual

  2. Chaos in pseudo-Newtonian black holes with halos

    NASA Astrophysics Data System (ADS)

    Guéron, E.; Letelier, P. S.

    2001-03-01

    Newtonian as well as special relativistic dynamics are used to study the stability of orbits of a test particle moving around a black hole with a dipolar halo. The black hole is modeled by either the usual monopole potential or the Paczyńki-Wiita pseudo-Newtonian potential. The full general relativistic similar case is also considered. The Poincaré section method and the Lyapunov characteristic exponents show that the orbits for the pseudo-Newtonian potential models are more unstable than the corresponding general relativistic geodesics.

  3. Improved methods in neural network-based adaptive output feedback control, with applications to flight control

    NASA Astrophysics Data System (ADS)

    Kim, Nakwan

    Utilizing the universal approximation property of neural networks, we develop several novel approaches to neural network-based adaptive output feedback control of nonlinear systems, and illustrate these approaches for several flight control applications. In particular, we address the problem of non-affine systems and eliminate the fixed point assumption present in earlier work. All of the stability proofs are carried out in a form that eliminates an algebraic loop in the neural network implementation. An approximate input/output feedback linearizing controller is augmented with a neural network using input/output sequences of the uncertain system. These approaches permit adaptation to both parametric uncertainty and unmodeled dynamics. All physical systems also have control position and rate limits, which may either deteriorate performance or cause instability for a sufficiently high control bandwidth. Here we apply a method for protecting an adaptive process from the effects of input saturation and time delays, known as "pseudo control hedging". This method was originally developed for the state feedback case, and we provide a stability analysis that extends its domain of applicability to the case of output feedback. The approach is illustrated by the design of a pitch-attitude flight control system for a linearized model of an R-50 experimental helicopter, and by the design of a pitch-rate control system for a 58-state model of a flexible aircraft consisting of rigid body dynamics coupled with actuator and flexible modes. A new approach to augmentation of an existing linear controller is introduced. It is especially useful when there is limited information concerning the plant model, and the existing controller. The approach is applied to the design of an adaptive autopilot for a guided munition. Design of a neural network adaptive control that ensures asymptotically stable tracking performance is also addressed.

  4. Daniell method for power spectral density estimation in atomic force microscopy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Labuda, Aleksander

    An alternative method for power spectral density (PSD) estimation—the Daniell method—is revisited and compared to the most prevalent method used in the field of atomic force microscopy for quantifying cantilever thermal motion—the Bartlett method. Both methods are shown to underestimate the Q factor of a simple harmonic oscillator (SHO) by a predictable, and therefore correctable, amount in the absence of spurious deterministic noise sources. However, the Bartlett method is much more prone to spectral leakage which can obscure the thermal spectrum in the presence of deterministic noise. By the significant reduction in spectral leakage, the Daniell method leads to amore » more accurate representation of the true PSD and enables clear identification and rejection of deterministic noise peaks. This benefit is especially valuable for the development of automated PSD fitting algorithms for robust and accurate estimation of SHO parameters from a thermal spectrum.« less

  5. Uniform high order spectral methods for one and two dimensional Euler equations

    NASA Technical Reports Server (NTRS)

    Cai, Wei; Shu, Chi-Wang

    1991-01-01

    Uniform high order spectral methods to solve multi-dimensional Euler equations for gas dynamics are discussed. Uniform high order spectral approximations with spectral accuracy in smooth regions of solutions are constructed by introducing the idea of the Essentially Non-Oscillatory (ENO) polynomial interpolations into the spectral methods. The authors present numerical results for the inviscid Burgers' equation, and for the one dimensional Euler equations including the interactions between a shock wave and density disturbance, Sod's and Lax's shock tube problems, and the blast wave problem. The interaction between a Mach 3 two dimensional shock wave and a rotating vortex is simulated.

  6. New Methods of Spectral-Density Based Graph Construction and Their Application to Hyperspectral Image Analysis

    NASA Astrophysics Data System (ADS)

    Stevens, Jeffrey

    pixel. A simple k bias addresses this problem. Many of the adaptive edge-reweighting techniques are based on the concept of codensity, so we explore codensity properties as they relate to density-based edge reweighting. We find that codensity may not be the best estimator of local scale due to variations in cluster density, so we introduce and compare two inherently density-weighted graph construction techniques from the data mining literature: shared nearest neighbors (SNN) and mutual proximity (MP). MP and SNN are not reliant upon a codensity measure, hence are not susceptible to its shortcomings. Neither has been used for hyperspectral analyses, so this presents the first study of these techniques on HSI data. We demonstrate MP and SNN can offer better performance, but in general none of the reweighting techniques improve the quality of these spectral graphs in our neighborhood structure tests. As such, these complex adaptive edge-reweighting techniques may need to be modified to increase their effectiveness. During this investigation, we probe deeper into properties of high-dimensional data and introduce the concept of concentration of measure (CoM)--the degradation in the efficacy of many common distance measures with increasing dimensionality--as it relates to spectral graph construction. CoM exists in pairwise distances between HSI pixels, but not to the degree experienced in random data of the same extrinsic dimension; a characteristic we demonstrate is due to the rich correlation and cluster structure present in HSI data. CoM can lead to hubness--a condition wherein some nodes have short distances (high similarities) to an exceptionally large number of nodes. We study hub presence in 49 HSI datasets of varying resolutions, altitudes, and spectral bands to demonstrate hubness effects are negligible in a k-NN classification example (generalized counting scenarios), but we note its impact on methods that use edge weights to derive manifold coordinates or splitting

  7. Enhancing Pseudo-Telepathy in the Magic Square Game

    PubMed Central

    Pawela, Łukasz; Gawron, Piotr; Puchała, Zbigniew; Sładkowski, Jan

    2013-01-01

    We study the possibility of reversing an action of a quantum channel. Our principal objective is to find a specific channel that reverses as accurately as possible an action of a given quantum channel. To achieve this goal we use semidefinite programming. We show the benefits of our method using the quantum pseudo-telepathy Magic Square game with noise. Our strategy is to move the pseudo-telepathy region to higher noise values. We show that it is possible to reverse the action of a noise channel using semidefinite programming. PMID:23762246

  8. A wavelet and least square filter based spatial-spectral denoising approach of hyperspectral imagery

    NASA Astrophysics Data System (ADS)

    Li, Ting; Chen, Xiao-Mei; Chen, Gang; Xue, Bo; Ni, Guo-Qiang

    2009-11-01

    Noise reduction is a crucial step in hyperspectral imagery pre-processing. Based on sensor characteristics, the noise of hyperspectral imagery represents in both spatial and spectral domain. However, most prevailing denosing techniques process the imagery in only one specific domain, which have not utilized multi-domain nature of hyperspectral imagery. In this paper, a new spatial-spectral noise reduction algorithm is proposed, which is based on wavelet analysis and least squares filtering techniques. First, in the spatial domain, a new stationary wavelet shrinking algorithm with improved threshold function is utilized to adjust the noise level band-by-band. This new algorithm uses BayesShrink for threshold estimation, and amends the traditional soft-threshold function by adding shape tuning parameters. Comparing with soft or hard threshold function, the improved one, which is first-order derivable and has a smooth transitional region between noise and signal, could save more details of image edge and weaken Pseudo-Gibbs. Then, in the spectral domain, cubic Savitzky-Golay filter based on least squares method is used to remove spectral noise and artificial noise that may have been introduced in during the spatial denoising. Appropriately selecting the filter window width according to prior knowledge, this algorithm has effective performance in smoothing the spectral curve. The performance of the new algorithm is experimented on a set of Hyperion imageries acquired in 2007. The result shows that the new spatial-spectral denoising algorithm provides more significant signal-to-noise-ratio improvement than traditional spatial or spectral method, while saves the local spectral absorption features better.

  9. Investigation of self-adaptive LED surgical lighting based on entropy contrast enhancing method

    NASA Astrophysics Data System (ADS)

    Liu, Peng; Wang, Huihui; Zhang, Yaqin; Shen, Junfei; Wu, Rengmao; Zheng, Zhenrong; Li, Haifeng; Liu, Xu

    2014-05-01

    Investigation was performed to explore the possibility of enhancing contrast by varying the spectral distribution (SPD) of the surgical lighting. The illumination scenes with different SPDs were generated by the combination of a self-adaptive white light optimization method and the LED ceiling system, the images of biological sample are taken by a CCD camera and then processed by an 'Entropy' based contrast evaluation model which is proposed specific for surgery occasion. Compared with the neutral white LED based and traditional algorithm based image enhancing methods, the illumination based enhancing method turns out a better performance in contrast enhancing and improves the average contrast value about 9% and 6%, respectively. This low cost method is simple, practicable, and thus may provide an alternative solution for the expensive visual facility medical instruments.

  10. Spectral difference Lanczos method for efficient time propagation in quantum control theory

    NASA Astrophysics Data System (ADS)

    Farnum, John D.; Mazziotti, David A.

    2004-04-01

    Spectral difference methods represent the real-space Hamiltonian of a quantum system as a banded matrix which possesses the accuracy of the discrete variable representation (DVR) and the efficiency of finite differences. When applied to time-dependent quantum mechanics, spectral differences enhance the efficiency of propagation methods for evolving the Schrödinger equation. We develop a spectral difference Lanczos method which is computationally more economical than the sinc-DVR Lanczos method, the split-operator technique, and even the fast-Fourier-Transform Lanczos method. Application of fast propagation is made to quantum control theory where chirped laser pulses are designed to dissociate both diatomic and polyatomic molecules. The specificity of the chirped laser fields is also tested as a possible method for molecular identification and discrimination.

  11. Continuous non-invasive blood glucose monitoring by spectral image differencing method

    NASA Astrophysics Data System (ADS)

    Huang, Hao; Liao, Ningfang; Cheng, Haobo; Liang, Jing

    2018-01-01

    Currently, the use of implantable enzyme electrode sensor is the main method for continuous blood glucose monitoring. But the effect of electrochemical reactions and the significant drift caused by bioelectricity in body will reduce the accuracy of the glucose measurements. So the enzyme-based glucose sensors need to be calibrated several times each day by the finger-prick blood corrections. This increases the patient's pain. In this paper, we proposed a method for continuous Non-invasive blood glucose monitoring by spectral image differencing method in the near infrared band. The method uses a high-precision CCD detector to switch the filter in a very short period of time, obtains the spectral images. And then by using the morphological method to obtain the spectral image differences, the dynamic change of blood sugar is reflected in the image difference data. Through the experiment proved that this method can be used to monitor blood glucose dynamically to a certain extent.

  12. Robust Optimal Adaptive Control Method with Large Adaptive Gain

    NASA Technical Reports Server (NTRS)

    Nguyen, Nhan T.

    2009-01-01

    In the presence of large uncertainties, a control system needs to be able to adapt rapidly to regain performance. Fast adaptation is referred to the implementation of adaptive control with a large adaptive gain to reduce the tracking error rapidly. However, a large adaptive gain can lead to high-frequency oscillations which can adversely affect robustness of an adaptive control law. A new adaptive control modification is presented that can achieve robust adaptation with a large adaptive gain without incurring high-frequency oscillations as with the standard model-reference adaptive control. The modification is based on the minimization of the Y2 norm of the tracking error, which is formulated as an optimal control problem. The optimality condition is used to derive the modification using the gradient method. The optimal control modification results in a stable adaptation and allows a large adaptive gain to be used for better tracking while providing sufficient stability robustness. Simulations were conducted for a damaged generic transport aircraft with both standard adaptive control and the adaptive optimal control modification technique. The results demonstrate the effectiveness of the proposed modification in tracking a reference model while maintaining a sufficient time delay margin.

  13. A new multi-spectral feature level image fusion method for human interpretation

    NASA Astrophysics Data System (ADS)

    Leviner, Marom; Maltz, Masha

    2009-03-01

    Various different methods to perform multi-spectral image fusion have been suggested, mostly on the pixel level. However, the jury is still out on the benefits of a fused image compared to its source images. We present here a new multi-spectral image fusion method, multi-spectral segmentation fusion (MSSF), which uses a feature level processing paradigm. To test our method, we compared human observer performance in a three-task experiment using MSSF against two established methods: averaging and principle components analysis (PCA), and against its two source bands, visible and infrared. The three tasks that we studied were: (1) simple target detection, (2) spatial orientation, and (3) camouflaged target detection. MSSF proved superior to the other fusion methods in all three tests; MSSF also outperformed the source images in the spatial orientation and camouflaged target detection tasks. Based on these findings, current speculation about the circumstances in which multi-spectral image fusion in general and specific fusion methods in particular would be superior to using the original image sources can be further addressed.

  14. On modelling three-dimensional piezoelectric smart structures with boundary spectral element method

    NASA Astrophysics Data System (ADS)

    Zou, Fangxin; Aliabadi, M. H.

    2017-05-01

    The computational efficiency of the boundary element method in elastodynamic analysis can be significantly improved by employing high-order spectral elements for boundary discretisation. In this work, for the first time, the so-called boundary spectral element method is utilised to formulate the piezoelectric smart structures that are widely used in structural health monitoring (SHM) applications. The resultant boundary spectral element formulation has been validated by the finite element method (FEM) and physical experiments. The new formulation has demonstrated a lower demand on computational resources and a higher numerical stability than commercial FEM packages. Comparing to the conventional boundary element formulation, a significant reduction in computational expenses has been achieved. In summary, the boundary spectral element formulation presented in this paper provides a highly efficient and stable mathematical tool for the development of SHM applications.

  15. Optimization-based limiters for the spectral element method

    NASA Astrophysics Data System (ADS)

    Guba, Oksana; Taylor, Mark; St-Cyr, Amik

    2014-06-01

    We introduce a new family of optimization based limiters for the h-p spectral element method. The native spectral element advection operator is oscillatory, but due to its mimetic properties it is locally conservative and has a monotone property with respect to element averages. We exploit this property to construct locally conservative quasimonotone and sign-preserving limiters. The quasimonotone limiter prevents all overshoots and undershoots at the element level, but is not strictly non-oscillatory. It also maintains quasimonotonicity even with the addition of a dissipation term such as viscosity or hyperviscosity. The limiters are based on a least-squares formulation with equality and inequality constraints and are local to each element. We evaluate the new limiters using a deformational flow test case for advection on the surface of the sphere. We focus on mesh refinement for moderate (p=3) and high order (p=6) elements. As expected, the spectral element method obtains its formal order of accuracy for smooth problems without limiters. For advection of fields with cusps and discontinuities, the high order convergence is lost, but in all cases, p=6 outperforms p=3 for the same degrees of freedom.

  16. Viriato: a Fourier-Hermite spectral code for strongly magnetised fluid-kinetic plasma dynamics

    NASA Astrophysics Data System (ADS)

    Loureiro, Nuno; Dorland, William; Fazendeiro, Luis; Kanekar, Anjor; Mallet, Alfred; Zocco, Alessandro

    2015-11-01

    We report on the algorithms and numerical methods used in Viriato, a novel fluid-kinetic code that solves two distinct sets of equations: (i) the Kinetic Reduced Electron Heating Model equations [Zocco & Schekochihin, 2011] and (ii) the kinetic reduced MHD (KRMHD) equations [Schekochihin et al., 2009]. Two main applications of these equations are magnetised (Alfvnénic) plasma turbulence and magnetic reconnection. Viriato uses operator splitting to separate the dynamics parallel and perpendicular to the ambient magnetic field (assumed strong). Along the magnetic field, Viriato allows for either a second-order accurate MacCormack method or, for higher accuracy, a spectral-like scheme. Perpendicular to the field Viriato is pseudo-spectral, and the time integration is performed by means of an iterative predictor-corrector scheme. In addition, a distinctive feature of Viriato is its spectral representation of the parallel velocity-space dependence, achieved by means of a Hermite representation of the perturbed distribution function. A series of linear and nonlinear benchmarks and tests are presented, with focus on 3D decaying kinetic turbulence. Work partially supported by Fundação para a Ciência e Tecnologia via Grants UID/FIS/50010/2013 and IF/00530/2013.

  17. Analysis of the spectral vanishing viscosity method for periodic conservation laws

    NASA Technical Reports Server (NTRS)

    Maday, Yvon; Tadmor, Eitan

    1988-01-01

    The convergence of the spectral vanishing method for both the spectral and pseudospectral discretizations of the inviscid Burgers' equation is analyzed. It is proven that this kind of vanishing viscosity is responsible for a spectral decay of those Fourier coefficients located toward the end of the computed spectrum; consequently, the discretization error is shown to be spectrally small independent of whether the underlying solution is smooth or not. This in turn implies that the numerical solution remains uniformly bounded and convergence follows by compensated compactness arguments.

  18. Atmospheric turbulence profiling with unknown power spectral density

    NASA Astrophysics Data System (ADS)

    Helin, Tapio; Kindermann, Stefan; Lehtonen, Jonatan; Ramlau, Ronny

    2018-04-01

    Adaptive optics (AO) is a technology in modern ground-based optical telescopes to compensate for the wavefront distortions caused by atmospheric turbulence. One method that allows to retrieve information about the atmosphere from telescope data is so-called SLODAR, where the atmospheric turbulence profile is estimated based on correlation data of Shack-Hartmann wavefront measurements. This approach relies on a layered Kolmogorov turbulence model. In this article, we propose a novel extension of the SLODAR concept by including a general non-Kolmogorov turbulence layer close to the ground with an unknown power spectral density. We prove that the joint estimation problem of the turbulence profile above ground simultaneously with the unknown power spectral density at the ground is ill-posed and propose three numerical reconstruction methods. We demonstrate by numerical simulations that our methods lead to substantial improvements in the turbulence profile reconstruction compared to the standard SLODAR-type approach. Also, our methods can accurately locate local perturbations in non-Kolmogorov power spectral densities.

  19. On Holo-Hilbert Spectral Analysis: A Full Informational Spectral Representation for Nonlinear and Non-Stationary Data

    NASA Technical Reports Server (NTRS)

    Huang, Norden E.; Hu, Kun; Yang, Albert C. C.; Chang, Hsing-Chih; Jia, Deng; Liang, Wei-Kuang; Yeh, Jia Rong; Kao, Chu-Lan; Juan, Chi-Huang; Peng, Chung Kang; hide

    2016-01-01

    The Holo-Hilbert spectral analysis (HHSA) method is introduced to cure the deficiencies of traditional spectral analysis and to give a full informational representation of nonlinear and non-stationary data. It uses a nested empirical mode decomposition and Hilbert-Huang transform (HHT) approach to identify intrinsic amplitude and frequency modulations often present in nonlinear systems. Comparisons are first made with traditional spectrum analysis, which usually achieved its results through convolutional integral transforms based on additive expansions of an a priori determined basis, mostly under linear and stationary assumptions. Thus, for non-stationary processes, the best one could do historically was to use the time- frequency representations, in which the amplitude (or energy density) variation is still represented in terms of time. For nonlinear processes, the data can have both amplitude and frequency modulations (intra-mode and inter-mode) generated by two different mechanisms: linear additive or nonlinear multiplicative processes. As all existing spectral analysis methods are based on additive expansions, either a priori or adaptive, none of them could possibly represent the multiplicative processes. While the earlier adaptive HHT spectral analysis approach could accommodate the intra-wave nonlinearity quite remarkably, it remained that any inter-wave nonlinear multiplicative mechanisms that include cross-scale coupling and phase-lock modulations were left untreated. To resolve the multiplicative processes issue, additional dimensions in the spectrum result are needed to account for the variations in both the amplitude and frequency modulations simultaneously. HHSA accommodates all the processes: additive and multiplicative, intra-mode and inter-mode, stationary and nonstationary, linear and nonlinear interactions. The Holo prefix in HHSA denotes a multiple dimensional representation with both additive and multiplicative capabilities.

  20. On Holo-Hilbert spectral analysis: a full informational spectral representation for nonlinear and non-stationary data

    PubMed Central

    Huang, Norden E.; Hu, Kun; Yang, Albert C. C.; Chang, Hsing-Chih; Jia, Deng; Liang, Wei-Kuang; Yeh, Jia Rong; Kao, Chu-Lan; Juan, Chi-Hung; Peng, Chung Kang; Meijer, Johanna H.; Wang, Yung-Hung; Long, Steven R.; Wu, Zhauhua

    2016-01-01

    The Holo-Hilbert spectral analysis (HHSA) method is introduced to cure the deficiencies of traditional spectral analysis and to give a full informational representation of nonlinear and non-stationary data. It uses a nested empirical mode decomposition and Hilbert–Huang transform (HHT) approach to identify intrinsic amplitude and frequency modulations often present in nonlinear systems. Comparisons are first made with traditional spectrum analysis, which usually achieved its results through convolutional integral transforms based on additive expansions of an a priori determined basis, mostly under linear and stationary assumptions. Thus, for non-stationary processes, the best one could do historically was to use the time–frequency representations, in which the amplitude (or energy density) variation is still represented in terms of time. For nonlinear processes, the data can have both amplitude and frequency modulations (intra-mode and inter-mode) generated by two different mechanisms: linear additive or nonlinear multiplicative processes. As all existing spectral analysis methods are based on additive expansions, either a priori or adaptive, none of them could possibly represent the multiplicative processes. While the earlier adaptive HHT spectral analysis approach could accommodate the intra-wave nonlinearity quite remarkably, it remained that any inter-wave nonlinear multiplicative mechanisms that include cross-scale coupling and phase-lock modulations were left untreated. To resolve the multiplicative processes issue, additional dimensions in the spectrum result are needed to account for the variations in both the amplitude and frequency modulations simultaneously. HHSA accommodates all the processes: additive and multiplicative, intra-mode and inter-mode, stationary and non-stationary, linear and nonlinear interactions. The Holo prefix in HHSA denotes a multiple dimensional representation with both additive and multiplicative capabilities. PMID:26953180

  1. An Improved Variational Method for Hyperspectral Image Pansharpening with the Constraint of Spectral Difference Minimization

    NASA Astrophysics Data System (ADS)

    Huang, Z.; Chen, Q.; Shen, Y.; Chen, Q.; Liu, X.

    2017-09-01

    Variational pansharpening can enhance the spatial resolution of a hyperspectral (HS) image using a high-resolution panchromatic (PAN) image. However, this technology may lead to spectral distortion that obviously affect the accuracy of data analysis. In this article, we propose an improved variational method for HS image pansharpening with the constraint of spectral difference minimization. We extend the energy function of the classic variational pansharpening method by adding a new spectral fidelity term. This fidelity term is designed following the definition of spectral angle mapper, which means that for every pixel, the spectral difference value of any two bands in the HS image is in equal proportion to that of the two corresponding bands in the pansharpened image. Gradient descent method is adopted to find the optimal solution of the modified energy function, and the pansharpened image can be reconstructed. Experimental results demonstrate that the constraint of spectral difference minimization is able to preserve the original spectral information well in HS images, and reduce the spectral distortion effectively. Compared to original variational method, our method performs better in both visual and quantitative evaluation, and achieves a good trade-off between spatial and spectral information.

  2. High order spectral volume and spectral difference methods on unstructured grids

    NASA Astrophysics Data System (ADS)

    Kannan, Ravishekar

    The spectral volume (SV) and the spectral difference (SD) methods were developed by Wang and Liu and their collaborators for conservation laws on unstructured grids. They were introduced to achieve high-order accuracy in an efficient manner. Recently, these methods were extended to three-dimensional systems and to the Navier Stokes equations. The simplicity and robustness of these methods have made them competitive against other higher order methods such as the discontinuous Galerkin and residual distribution methods. Although explicit TVD Runge-Kutta schemes for the temporal advancement are easy to implement, they suffer from small time step limited by the Courant-Friedrichs-Lewy (CFL) condition. When the polynomial order is high or when the grid is stretched due to complex geometries or boundary layers, the convergence rate of explicit schemes slows down rapidly. Solution strategies to remedy this problem include implicit methods and multigrid methods. A novel implicit lower-upper symmetric Gauss-Seidel (LU-SGS) relaxation method is employed as an iterative smoother. It is compared to the explicit TVD Runge-Kutta smoothers. For some p-multigrid calculations, combining implicit and explicit smoothers for different p-levels is also studied. The multigrid method considered is nonlinear and uses Full Approximation Scheme (FAS). An overall speed-up factor of up to 150 is obtained using a three-level p-multigrid LU-SGS approach in comparison with the single level explicit method for the Euler equations for the 3rd order SD method. A study of viscous flux formulations was carried out for the SV method. Three formulations were used to discretize the viscous fluxes: local discontinuous Galerkin (LDG), a penalty method and the 2nd method of Bassi and Rebay. Fourier analysis revealed some interesting advantages for the penalty method. These were implemented in the Navier Stokes solver. An implicit and p-multigrid method was also implemented for the above. An overall speed

  3. A Review of Spectral Methods for Variable Amplitude Fatigue Prediction and New Results

    NASA Technical Reports Server (NTRS)

    Larsen, Curtis E.; Irvine, Tom

    2013-01-01

    A comprehensive review of the available methods for estimating fatigue damage from variable amplitude loading is presented. The dependence of fatigue damage accumulation on power spectral density (psd) is investigated for random processes relevant to real structures such as in offshore or aerospace applications. Beginning with the Rayleigh (or narrow band) approximation, attempts at improved approximations or corrections to the Rayleigh approximation are examined by comparison to rainflow analysis of time histories simulated from psd functions representative of simple theoretical and real world applications. Spectral methods investigated include corrections by Wirsching and Light, Ortiz and Chen, the Dirlik formula, and the Single-Moment method, among other more recent proposed methods. Good agreement is obtained between the spectral methods and the time-domain rainflow identification for most cases, with some limitations. Guidelines are given for using the several spectral methods to increase confidence in the damage estimate.

  4. Empirical equations for the prediction of PGA and pseudo spectral accelerations using Iranian strong-motion data

    NASA Astrophysics Data System (ADS)

    Zafarani, H.; Luzi, Lucia; Lanzano, Giovanni; Soghrat, M. R.

    2018-01-01

    A recently compiled, comprehensive, and good-quality strong-motion database of the Iranian earthquakes has been used to develop local empirical equations for the prediction of peak ground acceleration (PGA) and 5%-damped pseudo-spectral accelerations (PSA) up to 4.0 s. The equations account for style of faulting and four site classes and use the horizontal distance from the surface projection of the rupture plane as a distance measure. The model predicts the geometric mean of horizontal components and the vertical-to-horizontal ratio. A total of 1551 free-field acceleration time histories recorded at distances of up to 200 km from 200 shallow earthquakes (depth < 30 km) with moment magnitudes ranging from Mw 4.0 to 7.3 are used to perform regression analysis using the random effects algorithm of Abrahamson and Youngs (Bull Seism Soc Am 82:505-510, 1992), which considers between-events as well as within-events errors. Due to the limited data used in the development of previous Iranian ground motion prediction equations (GMPEs) and strong trade-offs between different terms of GMPEs, it is likely that the previously determined models might have less precision on their coefficients in comparison to the current study. The richer database of the current study allows improving on prior works by considering additional variables that could not previously be adequately constrained. Here, a functional form used by Boore and Atkinson (Earthquake Spect 24:99-138, 2008) and Bindi et al. (Bull Seism Soc Am 9:1899-1920, 2011) has been adopted that allows accounting for the saturation of ground motions at close distances. A regression has been also performed for the V/H in order to retrieve vertical components by scaling horizontal spectra. In order to take into account epistemic uncertainty, the new model can be used along with other appropriate GMPEs through a logic tree framework for seismic hazard assessment in Iran and Middle East region.

  5. Extended pseudo-screen migration with multiple reference velocities

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Huang, Lian-Jie; Fehler, M.C.

    1997-11-01

    The pseudo-screen propagator is a kind of one way wave propagation based on the local Born approximation. The problem of the propagator is that it is difficult to calculate the scattered fields when the velocity perturbation is large; not to mention the accuracy of the propagator. We develop an extended pseudo-screen propagator by introducing different reference velocities in different regions of a medium to ensure the condition of small perturbation. The exploding reflector data for a 2D slice of the SEG/EAEG 3D salt model is generated by a finite difference scheme to test the feasibility of the method. The migrationmore » result demonstrates that the method can handle severe lateral velocity variations and provides high quality images for complex structures.« less

  6. Efficient solution of the Wigner-Liouville equation using a spectral decomposition of the force field

    NASA Astrophysics Data System (ADS)

    Van de Put, Maarten L.; Sorée, Bart; Magnus, Wim

    2017-12-01

    The Wigner-Liouville equation is reformulated using a spectral decomposition of the classical force field instead of the potential energy. The latter is shown to simplify the Wigner-Liouville kernel both conceptually and numerically as the spectral force Wigner-Liouville equation avoids the numerical evaluation of the highly oscillatory Wigner kernel which is nonlocal in both position and momentum. The quantum mechanical evolution is instead governed by a term local in space and non-local in momentum, where the non-locality in momentum has only a limited range. An interpretation of the time evolution in terms of two processes is presented; a classical evolution under the influence of the averaged driving field, and a probability-preserving quantum-mechanical generation and annihilation term. Using the inherent stability and reduced complexity, a direct deterministic numerical implementation using Chebyshev and Fourier pseudo-spectral methods is detailed. For the purpose of illustration, we present results for the time-evolution of a one-dimensional resonant tunneling diode driven out of equilibrium.

  7. Average spectral efficiency analysis of FSO links over turbulence channel with adaptive transmissions and aperture averaging

    NASA Astrophysics Data System (ADS)

    Aarthi, G.; Ramachandra Reddy, G.

    2018-03-01

    In our paper, the impact of adaptive transmission schemes: (i) optimal rate adaptation (ORA) and (ii) channel inversion with fixed rate (CIFR) on the average spectral efficiency (ASE) are explored for free-space optical (FSO) communications with On-Off Keying (OOK), Polarization shift keying (POLSK), and Coherent optical wireless communication (Coherent OWC) systems under different turbulence regimes. Further to enhance the ASE we have incorporated aperture averaging effects along with the above adaptive schemes. The results indicate that ORA adaptation scheme has the advantage of improving the ASE performance compared with CIFR under moderate and strong turbulence regime. The coherent OWC system with ORA excels the other modulation schemes and could achieve ASE performance of 49.8 bits/s/Hz at the average transmitted optical power of 6 dBm under strong turbulence. By adding aperture averaging effect we could achieve an ASE of 50.5 bits/s/Hz under the same conditions. This makes ORA with Coherent OWC modulation as a favorable candidate for improving the ASE of the FSO communication system.

  8. Formative Feedback Using Pseudo Peer Diagrams: Evaluating System Equilibrium of Buoyancy Forces

    ERIC Educational Resources Information Center

    Li, Sensen

    2013-01-01

    This study introduces an innovative instructional method, called "pseudo peer diagram" (PPD), where students employ executive skills to compare and contrast their work with others' as a formative feedback mechanism. The focus of this study is how students compare and contrast their own diagrams with the pseudo peer diagrams as a stimulus…

  9. Pseudo-pseudo Meigs' syndrome in a patient with systemic lupus erythematosus.

    PubMed

    Dalvi, S R; Yildirim, R; Santoriello, D; Belmont, H M

    2012-11-01

    Pseudo-pseudo Meigs' syndrome (PPMS) is a rare manifestation of patients with systemic lupus erythematosus (SLE), defined by the presence of ascites, pleural effusions and an elevated CA-125 level. We describe a patient with longstanding lupus who presented with localized lymphadenopathy and subsequently developed massive chylous ascites with marked hypoalbuminemia. A brief historical overview of Meigs' syndrome and related entities is presented, along with a discussion of the differential diagnosis of hypoalbuminemia and ascites in an SLE patient. In addition, we speculate on the optimal therapeutic intervention in such a patient.

  10. LORENE: Spectral methods differential equations solver

    NASA Astrophysics Data System (ADS)

    Gourgoulhon, Eric; Grandclément, Philippe; Marck, Jean-Alain; Novak, Jérôme; Taniguchi, Keisuke

    2016-08-01

    LORENE (Langage Objet pour la RElativité NumériquE) solves various problems arising in numerical relativity, and more generally in computational astrophysics. It is a set of C++ classes and provides tools to solve partial differential equations by means of multi-domain spectral methods. LORENE classes implement basic structures such as arrays and matrices, but also abstract mathematical objects, such as tensors, and astrophysical objects, such as stars and black holes.

  11. Aerodynamics of the pseudo-glottis.

    PubMed

    Kotby, M N; Hegazi, M A; Kamal, I; Gamal El Dien, N; Nassar, J

    2009-01-01

    The aim of this work is to study the hitherto unclear aerodynamic parameters of the pseudo-glottis following total laryngectomy. These parameters include airflow rate, sub-pseudo-glottic pressure (SubPsG), efficiency and resistance, as well as sound pressure level (SPL). Eighteen male patients who have undergone total laryngectomy, with an age range from 54 to 72 years, were investigated in this study. All tested patients were fluent esophageal 'voice' speakers utilizing tracheo-esophageal prosthesis. The airflow rate, SubPsG and SPL were measured. The results showed that the mean value of the airflow rate was 53 ml/s, the SubPsG pressure was 13 cm H(2)O, while the SPL was 66 dB. The normative data obtained from the true glottis in healthy age-matched subjects are 89 ml/s, 7.9 cm H(2)O and 70 dB, respectively. Other aerodynamic indices were calculated and compared to the data obtained from the true glottis. Such a comparison of the pseudo-glottic aerodynamic data to the data of the true glottis gives an insight into the mechanism of action of the pseudo-glottis. The data obtained suggests possible clinical applications in pseudo-voice training. Copyright 2009 S. Karger AG, Basel.

  12. Single-Trial Normalization for Event-Related Spectral Decomposition Reduces Sensitivity to Noisy Trials

    PubMed Central

    Grandchamp, Romain; Delorme, Arnaud

    2011-01-01

    In electroencephalography, the classical event-related potential model often proves to be a limited method to study complex brain dynamics. For this reason, spectral techniques adapted from signal processing such as event-related spectral perturbation (ERSP) – and its variant event-related synchronization and event-related desynchronization – have been used over the past 20 years. They represent average spectral changes in response to a stimulus. These spectral methods do not have strong consensus for comparing pre- and post-stimulus activity. When computing ERSP, pre-stimulus baseline removal is usually performed after averaging the spectral estimate of multiple trials. Correcting the baseline of each single-trial prior to averaging spectral estimates is an alternative baseline correction method. However, we show that this method leads to positively skewed post-stimulus ERSP values. We eventually present new single-trial-based ERSP baseline correction methods that perform trial normalization or centering prior to applying classical baseline correction methods. We show that single-trial correction methods minimize the contribution of artifactual data trials with high-amplitude spectral estimates and are robust to outliers when performing statistical inference testing. We then characterize these methods in terms of their time–frequency responses and behavior compared to classical ERSP methods. PMID:21994498

  13. An Extension of the Time-Spectral Method to Overset Solvers

    NASA Technical Reports Server (NTRS)

    Leffell, Joshua Isaac; Murman, Scott M.; Pulliam, Thomas

    2013-01-01

    Relative motion in the Cartesian or overset framework causes certain spatial nodes to move in and out of the physical domain as they are dynamically blanked by moving solid bodies. This poses a problem for the conventional Time-Spectral approach, which expands the solution at every spatial node into a Fourier series spanning the period of motion. The proposed extension to the Time-Spectral method treats unblanked nodes in the conventional manner but expands the solution at dynamically blanked nodes in a basis of barycentric rational polynomials spanning partitions of contiguously defined temporal intervals. Rational polynomials avoid Runge's phenomenon on the equidistant time samples of these sub-periodic intervals. Fourier- and rational polynomial-based differentiation operators are used in tandem to provide a consistent hybrid Time-Spectral overset scheme capable of handling relative motion. The hybrid scheme is tested with a linear model problem and implemented within NASA's OVERFLOW Reynolds-averaged Navier- Stokes (RANS) solver. The hybrid Time-Spectral solver is then applied to inviscid and turbulent RANS cases of plunging and pitching airfoils and compared to time-accurate and experimental data. A limiter was applied in the turbulent case to avoid undershoots in the undamped turbulent eddy viscosity while maintaining accuracy. The hybrid scheme matches the performance of the conventional Time-Spectral method and converges to the time-accurate results with increased temporal resolution.

  14. Methods for spectral image analysis by exploiting spatial simplicity

    DOEpatents

    Keenan, Michael R.

    2010-05-25

    Several full-spectrum imaging techniques have been introduced in recent years that promise to provide rapid and comprehensive chemical characterization of complex samples. One of the remaining obstacles to adopting these techniques for routine use is the difficulty of reducing the vast quantities of raw spectral data to meaningful chemical information. Multivariate factor analysis techniques, such as Principal Component Analysis and Alternating Least Squares-based Multivariate Curve Resolution, have proven effective for extracting the essential chemical information from high dimensional spectral image data sets into a limited number of components that describe the spectral characteristics and spatial distributions of the chemical species comprising the sample. There are many cases, however, in which those constraints are not effective and where alternative approaches may provide new analytical insights. For many cases of practical importance, imaged samples are "simple" in the sense that they consist of relatively discrete chemical phases. That is, at any given location, only one or a few of the chemical species comprising the entire sample have non-zero concentrations. The methods of spectral image analysis of the present invention exploit this simplicity in the spatial domain to make the resulting factor models more realistic. Therefore, more physically accurate and interpretable spectral and abundance components can be extracted from spectral images that have spatially simple structure.

  15. Methods for spectral image analysis by exploiting spatial simplicity

    DOEpatents

    Keenan, Michael R.

    2010-11-23

    Several full-spectrum imaging techniques have been introduced in recent years that promise to provide rapid and comprehensive chemical characterization of complex samples. One of the remaining obstacles to adopting these techniques for routine use is the difficulty of reducing the vast quantities of raw spectral data to meaningful chemical information. Multivariate factor analysis techniques, such as Principal Component Analysis and Alternating Least Squares-based Multivariate Curve Resolution, have proven effective for extracting the essential chemical information from high dimensional spectral image data sets into a limited number of components that describe the spectral characteristics and spatial distributions of the chemical species comprising the sample. There are many cases, however, in which those constraints are not effective and where alternative approaches may provide new analytical insights. For many cases of practical importance, imaged samples are "simple" in the sense that they consist of relatively discrete chemical phases. That is, at any given location, only one or a few of the chemical species comprising the entire sample have non-zero concentrations. The methods of spectral image analysis of the present invention exploit this simplicity in the spatial domain to make the resulting factor models more realistic. Therefore, more physically accurate and interpretable spectral and abundance components can be extracted from spectral images that have spatially simple structure.

  16. FOCUSR: Feature Oriented Correspondence using Spectral Regularization–A Method for Precise Surface Matching

    PubMed Central

    Lombaert, Herve; Grady, Leo; Polimeni, Jonathan R.; Cheriet, Farida

    2013-01-01

    Existing methods for surface matching are limited by the trade-off between precision and computational efficiency. Here we present an improved algorithm for dense vertex-to-vertex correspondence that uses direct matching of features defined on a surface and improves it by using spectral correspondence as a regularization. This algorithm has the speed of both feature matching and spectral matching while exhibiting greatly improved precision (distance errors of 1.4%). The method, FOCUSR, incorporates implicitly such additional features to calculate the correspondence and relies on the smoothness of the lowest-frequency harmonics of a graph Laplacian to spatially regularize the features. In its simplest form, FOCUSR is an improved spectral correspondence method that nonrigidly deforms spectral embeddings. We provide here a full realization of spectral correspondence where virtually any feature can be used as additional information using weights on graph edges, but also on graph nodes and as extra embedded coordinates. As an example, the full power of FOCUSR is demonstrated in a real case scenario with the challenging task of brain surface matching across several individuals. Our results show that combining features and regularizing them in a spectral embedding greatly improves the matching precision (to a sub-millimeter level) while performing at much greater speed than existing methods. PMID:23868776

  17. An Efficient Adaptive Window Size Selection Method for Improving Spectrogram Visualization.

    PubMed

    Nisar, Shibli; Khan, Omar Usman; Tariq, Muhammad

    2016-01-01

    Short Time Fourier Transform (STFT) is an important technique for the time-frequency analysis of a time varying signal. The basic approach behind it involves the application of a Fast Fourier Transform (FFT) to a signal multiplied with an appropriate window function with fixed resolution. The selection of an appropriate window size is difficult when no background information about the input signal is known. In this paper, a novel empirical model is proposed that adaptively adjusts the window size for a narrow band-signal using spectrum sensing technique. For wide-band signals, where a fixed time-frequency resolution is undesirable, the approach adapts the constant Q transform (CQT). Unlike the STFT, the CQT provides a varying time-frequency resolution. This results in a high spectral resolution at low frequencies and high temporal resolution at high frequencies. In this paper, a simple but effective switching framework is provided between both STFT and CQT. The proposed method also allows for the dynamic construction of a filter bank according to user-defined parameters. This helps in reducing redundant entries in the filter bank. Results obtained from the proposed method not only improve the spectrogram visualization but also reduce the computation cost and achieves 87.71% of the appropriate window length selection.

  18. Prediction of the spectral reflectance of laser-generated color prints by combination of an optical model and learning methods.

    PubMed

    Nébouy, David; Hébert, Mathieu; Fournel, Thierry; Larina, Nina; Lesur, Jean-Luc

    2015-09-01

    Recent color printing technologies based on the principle of revealing colors on pre-functionalized achromatic supports by laser irradiation offer advanced functionalities, especially for security applications. However, for such technologies, the color prediction is challenging, compared to classic ink-transfer printing systems. The spectral properties of the coloring materials modified by the lasers are not precisely known and may strongly vary, depending on the laser settings, in a nonlinear manner. We show in this study, through the example of the color laser marking (CLM) technology, based on laser bleaching of a mixture of pigments, that the combination of an adapted optical reflectance model and learning methods to get the model's parameters enables prediction of the spectral reflectance of any printable color with rather good accuracy. Even though the pigment mixture is formulated from three colored pigments, an analysis of the dimensionality of the spectral space generated by CLM printing, thanks to a principal component analysis decomposition, shows that at least four spectral primaries are needed for accurate spectral reflectance predictions. A polynomial interpolation is then used to relate RGB laser intensities with virtual coordinates of new basis vectors. By studying the influence of the number of calibration patches on the prediction accuracy, we can conclude that a reasonable number of 130 patches are enough to achieve good accuracy in this application.

  19. Development and validation of a GC-C-IRMS method for the confirmation analysis of pseudo-endogenous glucocorticoids in doping control.

    PubMed

    de la Torre, Xavier; Curcio, Davide; Colamonici, Cristiana; Molaioni, Francesco; Cilia, Marta; Botrè, Francesco

    2015-01-01

    Glucocorticoids are included in the S9 section of the World Anti-doping Agency (WADA) prohibited list international standard. Some among them are pseudo-endogenous steroids, like cortisol and cortisone, which present the same chemical structure as endogenously produced steroids. We are proposing an analytical method based on gas chromatography coupled to isotope ratio mass spectrometry (GC-C-IRMS) which allows discrimination between endogenous and synthetic origin of the urinary metabolites of the pseudo-endogenous glucocorticoids. A preliminary purification treatment by high-performance liquid chromatography (HPLC) of the target compounds (TC) (i.e., cortisol, tetrahydrocortisone (THE) 5α-tetrahydrocortisone (aTHE), tetrahydrocortisol (THF), and 5α-tetrahydrocortisol (aTHF)) allows collection of extracts with adequate purity for the subsequent analysis by IRMS. A population of 40 urine samples was analyzed for the TC and for the endogenous reference compounds (ERC: i.e., 11-desoxy-tetrahydrocortisol (THS) or pregnanediol). For each sample, the difference between the delta values of the ERCs and TCs (Δδ values) were calculated and based on that, some decision limits for atypical findings are proposed. The limits are below 3% units except for cortisol. The fit to purpose of the method has been confirmed by the analysis of urine samples collected in two patients under treatment with 25 mg of cortisone acetate (p.o). The samples showed Δδ values higher than 3 for at least 24 h following administration depending on the TC considered. The method can easily be integrated into existing procedures already used for the HPLC purification and IRMS analysis of pseudo-endogenous steroids with androgenic/anabolic activity. Copyright © 2015 John Wiley & Sons, Ltd.

  20. Spectral methods for time dependent partial differential equations

    NASA Technical Reports Server (NTRS)

    Gottlieb, D.; Turkel, E.

    1983-01-01

    The theory of spectral methods for time dependent partial differential equations is reviewed. When the domain is periodic Fourier methods are presented while for nonperiodic problems both Chebyshev and Legendre methods are discussed. The theory is presented for both hyperbolic and parabolic systems using both Galerkin and collocation procedures. While most of the review considers problems with constant coefficients the extension to nonlinear problems is also discussed. Some results for problems with shocks are presented.

  1. Photosynthetic action spectra and adaptation to spectral light distribution in a benthic cyanobacterial mat

    NASA Technical Reports Server (NTRS)

    Jorgensen, B. B.; Cohen, Y.; Des Marais, D. J.

    1987-01-01

    We studied adaptation to spectral light distribution in undisturbed benthic communities of cyanobacterial mats growing in hypersaline ponds at Guerrero Negro, Baja California, Mexico. Microscale measurements of oxygen photosynthesis and action spectra were performed with microelectrodes; spectral radiance was measured with fiber-optic microprobes. The spatial resolution of all measurements was 0.1 mm, and the spectral resolution was 10 to 15 nm. Light attenuation spectra showed absorption predominantly by chlorophyll a (Chl a) (430 and 670 nm), phycocyanin (620 nm), and carotenoids (440 to 500 nm). Blue light (450 nm) was attenuated 10-fold more strongly than red light (600 nm). The action spectra of the surface film of diatoms accordingly showed activity over the whole spectrum, with maxima for Chl a and carotenoids. The underlying dense Microcoleus population showed almost exclusively activity dependent upon light harvesting by phycobilins at 550 to 660 nm. Maximum activity was at 580 and 650 nm, indicating absorption by phycoerythrin and phycocyanin as well as by allophycocyanin. Very little Chl a-dependent activity could be detected in the cyanobacterial action spectrum, even with additional 600-nm light to excite photosystem II. The depth distribution of photosynthesis showed detectable activity down to a depth of 0.8 to 2.5 mm, where the downwelling radiant flux at 600 nm was reduced to 0.2 to 0.6% of the surface flux.

  2. [Study of the Detecting System of CH4 and SO2 Based on Spectral Absorption Method and UV Fluorescence Method].

    PubMed

    Wang, Shu-tao; Wang, Zhi-fang; Liu, Ming-hua; Wei, Meng; Chen, Dong-ying; Wang, Xing-long

    2016-01-01

    According to the spectral absorption characteristics of polluting gases and fluorescence characteristics, a time-division multiplexing detection system is designed. Through this system we can detect Methane (CH4) and sulfur dioxide (SO2) by using spectral absorption method and the SO2 can be detected by using UV fluorescence method. The system consists of four parts: a combination of a light source which could be switched, the common optical path, the air chamber and the signal processing section. The spectral absorption characteristics and fluorescence characteristics are measured first. Then the experiment of detecting CH4 and SO2 through spectral absorption method and the experiment of detecting SO2 through UV fluorescence method are conducted, respectively. Through measuring characteristics of spectral absorption and fluorescence, we get excitation wavelengths of SO2 and CH4 measured by spectral absorption method at the absorption peak are 280 nm and 1.64 μm, respectively, and the optimal excitation wavelength of SO2 measured by UV fluorescence method is 220 nm. we acquire the linear relation between the concentration of CH4 and relative intensity and the linear relation between the concentration of SO2 and output voltage after conducting the experiment of spectral absorption method, and the linearity are 98.7%, 99.2% respectively. Through the experiment of UV fluorescence method we acquire that the relation between the concentration of SO2 and the voltage is linear, and the linearity is 99.5%. Research shows that the system is able to be applied to detect the polluted gas by absorption spectrum method and UV fluorescence method. Combing these two measurement methods decreases the costing and the volume, and this system can also be used to measure the other gases. Such system has a certain value of application.

  3. Highly Accurate Analytical Approximate Solution to a Nonlinear Pseudo-Oscillator

    NASA Astrophysics Data System (ADS)

    Wu, Baisheng; Liu, Weijia; Lim, C. W.

    2017-07-01

    A second-order Newton method is presented to construct analytical approximate solutions to a nonlinear pseudo-oscillator in which the restoring force is inversely proportional to the dependent variable. The nonlinear equation is first expressed in a specific form, and it is then solved in two steps, a predictor and a corrector step. In each step, the harmonic balance method is used in an appropriate manner to obtain a set of linear algebraic equations. With only one simple second-order Newton iteration step, a short, explicit, and highly accurate analytical approximate solution can be derived. The approximate solutions are valid for all amplitudes of the pseudo-oscillator. Furthermore, the method incorporates second-order Taylor expansion in a natural way, and it is of significant faster convergence rate.

  4. Spectral ellipsometry as a method for characterization of nanosized films with ferromagnetic layers

    NASA Astrophysics Data System (ADS)

    Hashim, H.; Singkh, S. P.; Panina, L. V.; Pudonin, F. A.; Sherstnev, I. A.; Podgornaya, S. V.; Shpetnyi, I. A.; Beklemisheva, A. V.

    2017-11-01

    Nanosized films with ferromagnetic layers are widely used in nanoelectronics, sensor systems and telecommunications. Their properties may strongly differ from those of bulk materials that is on account of interfaces, intermediate layers and diffusion. In the present work, spectral ellipsometry and magnetooptical methods are adapted for characterization of the optical parameters and magnetization processes in two- and three-layer Cr/NiFe, Al/NiFe and Cr(Al)/Ge/NiFe films onto a sitall substrate for various thicknesses of Cr and Al layers. At a layer thickness below 20 nm, the complex refractive coefficients depend pronouncedly on the thickness. In two-layer films, remagnetization changes weakly over a thickness of the top layer, but the coercive force in three-layer films increases by more than twice upon remagnetization, while increasing the top layer thickness from 4 to 20 nm.

  5. The convergence of spectral methods for nonlinear conservation laws

    NASA Technical Reports Server (NTRS)

    Tadmor, Eitan

    1987-01-01

    The convergence of the Fourier method for scalar nonlinear conservation laws which exhibit spontaneous shock discontinuities is discussed. Numerical tests indicate that the convergence may (and in fact in some cases must) fail, with or without post-processing of the numerical solution. Instead, a new kind of spectrally accurate vanishing viscosity is introduced to augment the Fourier approximation of such nonlinear conservation laws. Using compensated compactness arguments, it is shown that this spectral viscosity prevents oscillations, and convergence to the unique entropy solution follows.

  6. Maintaining heterokaryosis in pseudo-homothallic fungi

    PubMed Central

    Grognet, Pierre; Silar, Philippe

    2015-01-01

    Among all the strategies displayed by fungi to reproduce and propagate, some species have adopted a peculiar behavior called pseudo-homothallism. Pseudo-homothallic fungi are true heterothallics, i.e., they need 2 genetically-compatible partners to mate, but they produce self-fertile mycelium in which the 2 different nuclei carrying the compatible mating types are present. This lifestyle not only enables the fungus to reproduce without finding a compatible partner, but also to cross with any mate it may encounter. However, to be fully functional, pseudo-homothallism requires maintaining heterokaryosis at every stage of the life cycle. We recently showed that neither the structure of the mating-type locus nor hybrid-enhancing effect due to the presence of the 2 mating types accounts for the maintenance of heterokaryosis in the pseudo-homothallic fungus P. anserina. In this addendum, we summarize the mechanisms creating heterokaryosis in P. anserina and 2 other well-known pseudo-homothallic fungi, Neurospora tetrasperma and Agaricus bisporus. We also discuss mechanisms potentially involved in maintaining heterokaryosis in these 3 species. PMID:26479494

  7. Maintaining heterokaryosis in pseudo-homothallic fungi.

    PubMed

    Grognet, Pierre; Silar, Philippe

    2015-01-01

    Among all the strategies displayed by fungi to reproduce and propagate, some species have adopted a peculiar behavior called pseudo-homothallism. Pseudo-homothallic fungi are true heterothallics, i.e., they need 2 genetically-compatible partners to mate, but they produce self-fertile mycelium in which the 2 different nuclei carrying the compatible mating types are present. This lifestyle not only enables the fungus to reproduce without finding a compatible partner, but also to cross with any mate it may encounter. However, to be fully functional, pseudo-homothallism requires maintaining heterokaryosis at every stage of the life cycle. We recently showed that neither the structure of the mating-type locus nor hybrid-enhancing effect due to the presence of the 2 mating types accounts for the maintenance of heterokaryosis in the pseudo-homothallic fungus P. anserina. In this addendum, we summarize the mechanisms creating heterokaryosis in P. anserina and 2 other well-known pseudo-homothallic fungi, Neurospora tetrasperma and Agaricus bisporus. We also discuss mechanisms potentially involved in maintaining heterokaryosis in these 3 species.

  8. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis

    PubMed Central

    Ji, Zhicheng; Ji, Hongkai

    2016-01-01

    When analyzing single-cell RNA-seq data, constructing a pseudo-temporal path to order cells based on the gradual transition of their transcriptomes is a useful way to study gene expression dynamics in a heterogeneous cell population. Currently, a limited number of computational tools are available for this task, and quantitative methods for comparing different tools are lacking. Tools for Single Cell Analysis (TSCAN) is a software tool developed to better support in silico pseudo-Time reconstruction in Single-Cell RNA-seq ANalysis. TSCAN uses a cluster-based minimum spanning tree (MST) approach to order cells. Cells are first grouped into clusters and an MST is then constructed to connect cluster centers. Pseudo-time is obtained by projecting each cell onto the tree, and the ordered sequence of cells can be used to study dynamic changes of gene expression along the pseudo-time. Clustering cells before MST construction reduces the complexity of the tree space. This often leads to improved cell ordering. It also allows users to conveniently adjust the ordering based on prior knowledge. TSCAN has a graphical user interface (GUI) to support data visualization and user interaction. Furthermore, quantitative measures are developed to objectively evaluate and compare different pseudo-time reconstruction methods. TSCAN is available at https://github.com/zji90/TSCAN and as a Bioconductor package. PMID:27179027

  9. The characteristics of failure among students who experienced pseudo thinking

    NASA Astrophysics Data System (ADS)

    Anggraini, D.; Kusmayadi, T. A.; Pramudya, I.

    2018-04-01

    The purpose of this research is to describe the thinking process of students who experienced pseudo thinking when solving the straight line equation. The result of this study shows the characteristics of error that caused students to experience pseudo thinking when solving the problem and their relation with students’ metacognition skill. This qualitative research was conducted in State 16 Junior High School in Surakarta, Indonesia during the odd semester of 2017/2018 academic year. The subjects of the study were students Junior High School students of 8th grade chosen using purposive sampling technique. Data were collected through the administration of think aloud method. The result showed that the characteristics of errors among the subjects are: 1) the answers resulted from pseudo thinking when solving the problem were obtained from the spontaneous, fast, unconscious and uncontrolled thinking process; 2) students had misconception; 3) students had tendency to memorize the formula and imitate the completion procedure; 4) students experienced fuzzy memory when solving the problem. From the mistakes among students who experienced pseudo thinking, their metacognition ability could be inferred.

  10. [Pseudo-Bartter syndrome--2 cases].

    PubMed

    Jóźwiak, Lucyna; Jaroszyński, Andrzej; Baranowicz-Gaszczyk, Iwona; Borowicz, Ewa; Ksiazek, Andrzej

    2010-01-01

    Bartter syndrome represents the group of renal disturbances characterized by hypokaliemia and metabolic alkalosis. Some diseases could display hypokalemic metabolic alkalosis without primary tubular dysfunction. These disorders are called pseudo-Bartter syndrome. In this paper we present 2 cases of pseudo-Bartter syndrome related among to other things to overuse of diuretic drugs.

  11. A pseudo-thermodynamic description of dispersion for nanocomposites

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Jin, Yan; Beaucage, Gregory; Vogtt, Karsten

    Dispersion in polymer nanocomposites is determined by the kinetics of mixing and chemical affinity. Compounds like reinforcing filler/elastomer blends display some similarity to colloidal solutions in that the filler particles are close to randomly dispersed through processing. It is attractive to apply a pseudo-thermodynamic approach taking advantage of this analogy between the kinetics of mixing for polymer compounds and thermally driven dispersion for colloids. In order to demonstrate this pseudo-thermodynamic approach, two polybutadienes and one polyisoprene were milled with three carbon blacks and two silicas. These samples were examined using small-angle x-ray scattering as a function of filler concentration tomore » determine a pseudo-second order virial coefficient, A2, which is used as an indicator for compatibility of the filler and polymer. It is found that A2 follows the expected behavior with lower values for smaller primary particles indicating that smaller particles are less compatible and more difficult to mix. The measured values of A2 can be used to specify repulsive interaction potentials for coarse grain DPD simulations of filler/elastomer systems. In addition, new methods to quantify the filler percolation threshold and filler mesh size as a function of filler concentration are obtained. Moreover, the results represent a new approach to understanding and predicting compatibility in polymer nanocomposites based on a pseudo-thermodynamic approach.« less

  12. A pseudo-thermodynamic description of dispersion for nanocomposites

    DOE PAGES

    Jin, Yan; Beaucage, Gregory; Vogtt, Karsten; ...

    2017-09-18

    Dispersion in polymer nanocomposites is determined by the kinetics of mixing and chemical affinity. Compounds like reinforcing filler/elastomer blends display some similarity to colloidal solutions in that the filler particles are close to randomly dispersed through processing. It is attractive to apply a pseudo-thermodynamic approach taking advantage of this analogy between the kinetics of mixing for polymer compounds and thermally driven dispersion for colloids. In order to demonstrate this pseudo-thermodynamic approach, two polybutadienes and one polyisoprene were milled with three carbon blacks and two silicas. These samples were examined using small-angle x-ray scattering as a function of filler concentration tomore » determine a pseudo-second order virial coefficient, A2, which is used as an indicator for compatibility of the filler and polymer. It is found that A2 follows the expected behavior with lower values for smaller primary particles indicating that smaller particles are less compatible and more difficult to mix. The measured values of A2 can be used to specify repulsive interaction potentials for coarse grain DPD simulations of filler/elastomer systems. In addition, new methods to quantify the filler percolation threshold and filler mesh size as a function of filler concentration are obtained. Moreover, the results represent a new approach to understanding and predicting compatibility in polymer nanocomposites based on a pseudo-thermodynamic approach.« less

  13. Modified Spectral Fatigue Methods for S-N Curves With MIL-HDBK-5J Coefficients

    NASA Technical Reports Server (NTRS)

    Irvine, Tom; Larsen, Curtis

    2016-01-01

    The rainflow method is used for counting fatigue cycles from a stress response time history, where the fatigue cycles are stress-reversals. The rainflow method allows the application of Palmgren-Miner's rule in order to assess the fatigue life of a structure subject to complex loading. The fatigue damage may also be calculated from a stress response power spectral density (PSD) using the semi-empirical Dirlik, Single Moment, Zhao-Baker and other spectral methods. These methods effectively assume that the PSD has a corresponding time history which is stationary with a normal distribution. This paper shows how the probability density function for rainflow stress cycles can be extracted from each of the spectral methods. This extraction allows for the application of the MIL-HDBK-5J fatigue coefficients in the cumulative damage summation. A numerical example is given in this paper for the stress response of a beam undergoing random base excitation, where the excitation is applied separately by a time history and by its corresponding PSD. The fatigue calculation is performed in the time domain, as well as in the frequency domain via the modified spectral methods. The result comparison shows that the modified spectral methods give comparable results to the time domain rainflow counting method.

  14. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Vay, Jean-Luc, E-mail: jlvay@lbl.gov; Haber, Irving; Godfrey, Brendan B.

    Pseudo-spectral electromagnetic solvers (i.e. representing the fields in Fourier space) have extraordinary precision. In particular, Haber et al. presented in 1973 a pseudo-spectral solver that integrates analytically the solution over a finite time step, under the usual assumption that the source is constant over that time step. Yet, pseudo-spectral solvers have not been widely used, due in part to the difficulty for efficient parallelization owing to global communications associated with global FFTs on the entire computational domains. A method for the parallelization of electromagnetic pseudo-spectral solvers is proposed and tested on single electromagnetic pulses, and on Particle-In-Cell simulations of themore » wakefield formation in a laser plasma accelerator. The method takes advantage of the properties of the Discrete Fourier Transform, the linearity of Maxwell’s equations and the finite speed of light for limiting the communications of data within guard regions between neighboring computational domains. Although this requires a small approximation, test results show that no significant error is made on the test cases that have been presented. The proposed method opens the way to solvers combining the favorable parallel scaling of standard finite-difference methods with the accuracy advantages of pseudo-spectral methods.« less

  15. Analysis on pseudo excitation of random vibration for structure of time flight counter

    NASA Astrophysics Data System (ADS)

    Wu, Qiong; Li, Dapeng

    2015-03-01

    Traditional computing method is inefficient for getting key dynamical parameters of complicated structure. Pseudo Excitation Method(PEM) is an effective method for calculation of random vibration. Due to complicated and coupling random vibration in rocket or shuttle launching, the new staging white noise mathematical model is deduced according to the practical launch environment. This deduced model is applied for PEM to calculate the specific structure of Time of Flight Counter(ToFC). The responses of power spectral density and the relevant dynamic characteristic parameters of ToFC are obtained in terms of the flight acceptance test level. Considering stiffness of fixture structure, the random vibration experiments are conducted in three directions to compare with the revised PEM. The experimental results show the structure can bear the random vibration caused by launch without any damage and key dynamical parameters of ToFC are obtained. The revised PEM is similar with random vibration experiment in dynamical parameters and responses are proved by comparative results. The maximum error is within 9%. The reasons of errors are analyzed to improve reliability of calculation. This research provides an effective method for solutions of computing dynamical characteristic parameters of complicated structure in the process of rocket or shuttle launching.

  16. Second order Pseudo-gaussian shaper

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Beche, Jean-Francois

    2002-11-22

    The purpose of this document is to provide a calculus spreadsheet for the design of second-order pseudo-gaussian shapers. A very interesting reference is given by C.H. Mosher ''Pseudo-Gaussian Transfer Functions with Superlative Recovery'', IEEE TNS Volume 23, p. 226-228 (1976). Fred Goulding and Don Landis have studied the structure of those filters and their implementation and this document will outline the calculation leading to the relation between the coefficients of the filter. The general equation of the second order pseudo-gaussian filter is: f(t) = P{sub 0} {center_dot} e{sup -3kt} {center_dot} sin{sup 2}(kt). The parameter k is a normalization factor.

  17. Reflectometer for pseudo-Brewster angle spectrometry (BAIRS)

    NASA Astrophysics Data System (ADS)

    Potter, Roy F.

    2000-10-01

    A simple, robust reflectometer, pre-set for several angles of incidence (AOI), has been designed and used for determining the optical parameters of opaque samples having a specular surface. A single, linear polarizing element permits the measurement of perpendicular(s) and parallel (p) reflectence at each AOI. The BAIRS algorithm determines the empirical optical parameters for the subject surface at the pseudo-Brewster AOI, based on the measurement of p/s at two AOI's and, in turn the optical constants n and k (or (epsilon) 1 and (epsilon) 2). Radiation sources in current use, are a stabilized tungsten-halide lamp or a deuterium lamp for the visible and near UV spectral regions. Silica fiber optics and lenses deliver input and output radiation from the source and to a CCD array scanned diffraction spectrometer. Results for a sample of GaAs will be presented along with a discussion of dispersion features in the optical constant spectra.

  18. Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence

    NASA Astrophysics Data System (ADS)

    Yokota, R.; Narumi, T.; Sakamaki, R.; Kameoka, S.; Obi, S.; Yasuoka, K.

    2009-11-01

    Recent advances in the parallelizability of fast N-body algorithms, and the programmability of graphics processing units (GPUs) have opened a new path for particle based simulations. For the simulation of turbulence, vortex methods can now be considered as an interesting alternative to finite difference and spectral methods. The present study focuses on the efficient implementation of the fast multipole method and pseudo-particle method on a cluster of NVIDIA GeForce 8800 GT GPUs, and applies this to a vortex method calculation of homogeneous isotropic turbulence. The results of the present vortex method agree quantitatively with that of the reference calculation using a spectral method. We achieved a maximum speed of 7.48 TFlops using 64 GPUs, and the cost performance was near 9.4/GFlops. The calculation of the present vortex method on 64 GPUs took 4120 s, while the spectral method on 32 CPUs took 4910 s.

  19. Spectral element method for elastic and acoustic waves in frequency domain

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shi, Linlin; Zhou, Yuanguo; Wang, Jia-Min

    Numerical techniques in time domain are widespread in seismic and acoustic modeling. In some applications, however, frequency-domain techniques can be advantageous over the time-domain approach when narrow band results are desired, especially if multiple sources can be handled more conveniently in the frequency domain. Moreover, the medium attenuation effects can be more accurately and conveniently modeled in the frequency domain. In this paper, we present a spectral-element method (SEM) in frequency domain to simulate elastic and acoustic waves in anisotropic, heterogeneous, and lossy media. The SEM is based upon the finite-element framework and has exponential convergence because of the usemore » of GLL basis functions. The anisotropic perfectly matched layer is employed to truncate the boundary for unbounded problems. Compared with the conventional finite-element method, the number of unknowns in the SEM is significantly reduced, and higher order accuracy is obtained due to its spectral accuracy. To account for the acoustic-solid interaction, the domain decomposition method (DDM) based upon the discontinuous Galerkin spectral-element method is proposed. Numerical experiments show the proposed method can be an efficient alternative for accurate calculation of elastic and acoustic waves in frequency domain.« less

  20. A note on the accuracy of spectral method applied to nonlinear conservation laws

    NASA Technical Reports Server (NTRS)

    Shu, Chi-Wang; Wong, Peter S.

    1994-01-01

    Fourier spectral method can achieve exponential accuracy both on the approximation level and for solving partial differential equations if the solutions are analytic. For a linear partial differential equation with a discontinuous solution, Fourier spectral method produces poor point-wise accuracy without post-processing, but still maintains exponential accuracy for all moments against analytic functions. In this note we assess the accuracy of Fourier spectral method applied to nonlinear conservation laws through a numerical case study. We find that the moments with respect to analytic functions are no longer very accurate. However the numerical solution does contain accurate information which can be extracted by a post-processing based on Gegenbauer polynomials.

  1. A Legendre tau-spectral method for solving time-fractional heat equation with nonlocal conditions.

    PubMed

    Bhrawy, A H; Alghamdi, M A

    2014-01-01

    We develop the tau-spectral method to solve the time-fractional heat equation (T-FHE) with nonlocal condition. In order to achieve highly accurate solution of this problem, the operational matrix of fractional integration (described in the Riemann-Liouville sense) for shifted Legendre polynomials is investigated in conjunction with tau-spectral scheme and the Legendre operational polynomials are used as the base function. The main advantage in using the presented scheme is that it converts the T-FHE with nonlocal condition to a system of algebraic equations that simplifies the problem. For demonstrating the validity and applicability of the developed spectral scheme, two numerical examples are presented. The logarithmic graphs of the maximum absolute errors is presented to achieve the exponential convergence of the proposed method. Comparing between our spectral method and other methods ensures that our method is more accurate than those solved similar problem.

  2. A Legendre tau-Spectral Method for Solving Time-Fractional Heat Equation with Nonlocal Conditions

    PubMed Central

    Bhrawy, A. H.; Alghamdi, M. A.

    2014-01-01

    We develop the tau-spectral method to solve the time-fractional heat equation (T-FHE) with nonlocal condition. In order to achieve highly accurate solution of this problem, the operational matrix of fractional integration (described in the Riemann-Liouville sense) for shifted Legendre polynomials is investigated in conjunction with tau-spectral scheme and the Legendre operational polynomials are used as the base function. The main advantage in using the presented scheme is that it converts the T-FHE with nonlocal condition to a system of algebraic equations that simplifies the problem. For demonstrating the validity and applicability of the developed spectral scheme, two numerical examples are presented. The logarithmic graphs of the maximum absolute errors is presented to achieve the exponential convergence of the proposed method. Comparing between our spectral method and other methods ensures that our method is more accurate than those solved similar problem. PMID:25057507

  3. Preconditioned Mixed Spectral Element Methods for Elasticity and Stokes Problems

    NASA Technical Reports Server (NTRS)

    Pavarino, Luca F.

    1996-01-01

    Preconditioned iterative methods for the indefinite systems obtained by discretizing the linear elasticity and Stokes problems with mixed spectral elements in three dimensions are introduced and analyzed. The resulting stiffness matrices have the structure of saddle point problems with a penalty term, which is associated with the Poisson ratio for elasticity problems or with stabilization techniques for Stokes problems. The main results of this paper show that the convergence rate of the resulting algorithms is independent of the penalty parameter, the number of spectral elements Nu and mildly dependent on the spectral degree eta via the inf-sup constant. The preconditioners proposed for the whole indefinite system are block-diagonal and block-triangular. Numerical experiments presented in the final section show that these algorithms are a practical and efficient strategy for the iterative solution of the indefinite problems arising from mixed spectral element discretizations of elliptic systems.

  4. Pseudo-capacitor device for aqueous electrolytes

    DOEpatents

    Prakash, Jai; Thackeray, Michael M.; Dees, Dennis W.; Vissers, Donald R.; Myles, Kevin M.

    1998-01-01

    A pseudo-capacitor having a high energy storage capacity develops a double layer capacitance as well as a Faradaic or battery-like redox reaction, also referred to as pseudo-capacitance. The Faradaic reaction gives rise to a capacitance much greater than that of the typical ruthenate oxide ultracapacitor which develops only charge separation-based double layer capacitance. The capacitor employs a lead and/or bismuth/ruthenate and/or iridium system having the formula A.sub.2 ›B.sub.2-x Pb.sub.x !O.sub.7-y, where A=Pb, Bi, and B=Ru, Ir, and Opseudo-capacitance, affords high energy/power density in the pseudo-capacitor. The amount of expensive ruthenate and iridium can be substantially reduced in the pseudo-capacitor by increasing the lead content while improving energy storage capacity.

  5. Pseudo-capacitor device for aqueous electrolytes

    DOEpatents

    Prakash, J.; Thackeray, M.M.; Dees, D.W.; Vissers, D.R.; Myles, K.M.

    1998-11-24

    A pseudo-capacitor having a high energy storage capacity develops a double layer capacitance as well as a Faradaic or battery-like redox reaction, also referred to as pseudo-capacitance. The Faradaic reaction gives rise to a capacitance much greater than that of the typical ruthenate oxide ultracapacitor which develops only charge separation-based double layer capacitance. The capacitor employs a lead and/or bismuth/ruthenate and/or iridium system having the formula A{sub 2}[B{sub 2{minus}x}Pb{sub x}]O{sub 7{minus}y}, where A=Pb, Bi, and B=Ru, Ir, and Opseudo-capacitance, affords high energy/power density in the pseudo-capacitor. The amount of expensive ruthenate and iridium can be substantially reduced in the pseudo-capacitor by increasing the lead content while improving energy storage capacity. 8 figs.

  6. Validation of a clinical assessment of spectral-ripple resolution for cochlear implant users.

    PubMed

    Drennan, Ward R; Anderson, Elizabeth S; Won, Jong Ho; Rubinstein, Jay T

    2014-01-01

    Nonspeech psychophysical tests of spectral resolution, such as the spectral-ripple discrimination task, have been shown to correlate with speech-recognition performance in cochlear implant (CI) users. However, these tests are best suited for use in the research laboratory setting and are impractical for clinical use. A test of spectral resolution that is quicker and could more easily be implemented in the clinical setting has been developed. The objectives of this study were (1) To determine whether this new clinical ripple test would yield individual results equivalent to the longer, adaptive version of the ripple-discrimination test; (2) To evaluate test-retest reliability for the clinical ripple measure; and (3) To examine the relationship between clinical ripple performance and monosyllabic word recognition in quiet for a group of CI listeners. Twenty-eight CI recipients participated in the study. Each subject was tested on both the adaptive and the clinical versions of spectral ripple discrimination, as well as consonant-nucleus-consonant word recognition in quiet. The adaptive version of spectral ripple used a two-up, one-down procedure for determining spectral ripple discrimination threshold. The clinical ripple test used a method of constant stimuli, with trials for each of 12 fixed ripple densities occurring six times in random order. Results from the clinical ripple test (proportion correct) were then compared with ripple-discrimination thresholds (in ripples per octave) from the adaptive test. The clinical ripple test showed strong concurrent validity, evidenced by a good correlation between clinical ripple and adaptive ripple results (r = 0.79), as well as a correlation with word recognition (r = 0.7). Excellent test-retest reliability was also demonstrated with a high test-retest correlation (r = 0.9). The clinical ripple test is a reliable nonlinguistic measure of spectral resolution, optimized for use with CI users in a clinical setting. The test

  7. Spectral method for pricing options in illiquid markets

    NASA Astrophysics Data System (ADS)

    Pindza, Edson; Patidar, Kailash C.

    2012-09-01

    We present a robust numerical method to solve a problem of pricing options in illiquid markets. The governing equation is described by a nonlinear Black-Scholes partial differential equation (BS-PDE) of the reaction-diffusion-advection type. To discretise this BS-PDE numerically, we use a spectral method in the asset (spatial) direction and couple it with a fifth order RADAU method for the discretisation in the time direction. Numerical experiments illustrate that our approach is very efficient for pricing financial options in illiquid markets.

  8. Development and application of the maximum entropy method and other spectral estimation techniques

    NASA Astrophysics Data System (ADS)

    King, W. R.

    1980-09-01

    This summary report is a collection of four separate progress reports prepared under three contracts, which are all sponsored by the Office of Naval Research in Arlington, Virginia. This report contains the results of investigations into the application of the maximum entropy method (MEM), a high resolution, frequency and wavenumber estimation technique. The report also contains a description of two, new, stable, high resolution spectral estimation techniques that is provided in the final report section. Many examples of wavenumber spectral patterns for all investigated techniques are included throughout the report. The maximum entropy method is also known as the maximum entropy spectral analysis (MESA) technique, and both names are used in the report. Many MEM wavenumber spectral patterns are demonstrated using both simulated and measured radar signal and noise data. Methods for obtaining stable MEM wavenumber spectra are discussed, broadband signal detection using the MEM prediction error transform (PET) is discussed, and Doppler radar narrowband signal detection is demonstrated using the MEM technique. It is also shown that MEM cannot be applied to randomly sampled data. The two new, stable, high resolution, spectral estimation techniques discussed in the final report section, are named the Wiener-King and the Fourier spectral estimation techniques. The two new techniques have a similar derivation based upon the Wiener prediction filter, but the two techniques are otherwise quite different. Further development of the techniques and measurement of the technique spectral characteristics is recommended for subsequent investigation.

  9. Semi-Automatic Normalization of Multitemporal Remote Images Based on Vegetative Pseudo-Invariant Features

    PubMed Central

    Garcia-Torres, Luis; Caballero-Novella, Juan J.; Gómez-Candón, David; De-Castro, Ana Isabel

    2014-01-01

    A procedure to achieve the semi-automatic relative image normalization of multitemporal remote images of an agricultural scene called ARIN was developed using the following procedures: 1) defining the same parcel of selected vegetative pseudo-invariant features (VPIFs) in each multitemporal image; 2) extracting data concerning the VPIF spectral bands from each image; 3) calculating the correction factors (CFs) for each image band to fit each image band to the average value of the image series; and 4) obtaining the normalized images by linear transformation of each original image band through the corresponding CF. ARIN software was developed to semi-automatically perform the ARIN procedure. We have validated ARIN using seven GeoEye-1 satellite images taken over the same location in Southern Spain from early April to October 2010 at an interval of approximately 3 to 4 weeks. The following three VPIFs were chosen: citrus orchards (CIT), olive orchards (OLI) and poplar groves (POP). In the ARIN-normalized images, the range, standard deviation (s. d.) and root mean square error (RMSE) of the spectral bands and vegetation indices were considerably reduced compared to the original images, regardless of the VPIF or the combination of VPIFs selected for normalization, which demonstrates the method’s efficacy. The correlation coefficients between the CFs among VPIFs for any spectral band (and all bands overall) were calculated to be at least 0.85 and were significant at P = 0.95, indicating that the normalization procedure was comparably performed regardless of the VPIF chosen. ARIN method was designed only for agricultural and forestry landscapes where VPIFs can be identified. PMID:24604031

  10. Spectrum-based method to generate good decoy libraries for spectral library searching in peptide identifications.

    PubMed

    Cheng, Chia-Ying; Tsai, Chia-Feng; Chen, Yu-Ju; Sung, Ting-Yi; Hsu, Wen-Lian

    2013-05-03

    As spectral library searching has received increasing attention for peptide identification, constructing good decoy spectra from the target spectra is the key to correctly estimating the false discovery rate in searching against the concatenated target-decoy spectral library. Several methods have been proposed to construct decoy spectral libraries. Most of them construct decoy peptide sequences and then generate theoretical spectra accordingly. In this paper, we propose a method, called precursor-swap, which directly constructs decoy spectral libraries directly at the "spectrum level" without generating decoy peptide sequences by swapping the precursors of two spectra selected according to a very simple rule. Our spectrum-based method does not require additional efforts to deal with ion types (e.g., a, b or c ions), fragment mechanism (e.g., CID, or ETD), or unannotated peaks, but preserves many spectral properties. The precursor-swap method is evaluated on different spectral libraries and the results of obtained decoy ratios show that it is comparable to other methods. Notably, it is efficient in time and memory usage for constructing decoy libraries. A software tool called Precursor-Swap-Decoy-Generation (PSDG) is publicly available for download at http://ms.iis.sinica.edu.tw/PSDG/.

  11. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis.

    PubMed

    Ji, Zhicheng; Ji, Hongkai

    2016-07-27

    When analyzing single-cell RNA-seq data, constructing a pseudo-temporal path to order cells based on the gradual transition of their transcriptomes is a useful way to study gene expression dynamics in a heterogeneous cell population. Currently, a limited number of computational tools are available for this task, and quantitative methods for comparing different tools are lacking. Tools for Single Cell Analysis (TSCAN) is a software tool developed to better support in silico pseudo-Time reconstruction in Single-Cell RNA-seq ANalysis. TSCAN uses a cluster-based minimum spanning tree (MST) approach to order cells. Cells are first grouped into clusters and an MST is then constructed to connect cluster centers. Pseudo-time is obtained by projecting each cell onto the tree, and the ordered sequence of cells can be used to study dynamic changes of gene expression along the pseudo-time. Clustering cells before MST construction reduces the complexity of the tree space. This often leads to improved cell ordering. It also allows users to conveniently adjust the ordering based on prior knowledge. TSCAN has a graphical user interface (GUI) to support data visualization and user interaction. Furthermore, quantitative measures are developed to objectively evaluate and compare different pseudo-time reconstruction methods. TSCAN is available at https://github.com/zji90/TSCAN and as a Bioconductor package. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  12. Assessing Adaptive Instructional Design Tools and Methods in ADAPT[IT].

    ERIC Educational Resources Information Center

    Eseryel, Deniz; Spector, J. Michael

    ADAPT[IT] (Advanced Design Approach for Personalized Training - Interactive Tools) is a European project within the Information Society Technologies program that is providing design methods and tools to guide a training designer according to the latest cognitive science and standardization principles. ADAPT[IT] addresses users in two significantly…

  13. Approximate Solution Methods for Spectral Radiative Transfer in High Refractive Index Layers

    NASA Technical Reports Server (NTRS)

    Siegel, R.; Spuckler, C. M.

    1994-01-01

    Some ceramic materials for high temperature applications are partially transparent for radiative transfer. The refractive indices of these materials can be substantially greater than one which influences internal radiative emission and reflections. Heat transfer behavior of single and laminated layers has been obtained in the literature by numerical solutions of the radiative transfer equations coupled with heat conduction and heating at the boundaries by convection and radiation. Two-flux and diffusion methods are investigated here to obtain approximate solutions using a simpler formulation than required for exact numerical solutions. Isotropic scattering is included. The two-flux method for a single layer yields excellent results for gray and two band spectral calculations. The diffusion method yields a good approximation for spectral behavior in laminated multiple layers if the overall optical thickness is larger than about ten. A hybrid spectral model is developed using the two-flux method in the optically thin bands, and radiative diffusion in bands that are optically thick.

  14. Solar Wind-Magnetosphere Coupling Influences on Pseudo-Breakup Activity

    NASA Technical Reports Server (NTRS)

    Fillingim, M. O.; Brittnacher, M.; Parks, G. K.; Germany, G. A.; Spann, J. F.

    1998-01-01

    Pseudo-breakups are brief, localized aurora[ arc brightening, which do not lead to a global expansion, are historically observed during the growth phase of substorms. Previous studies have demonstrated that phenomenologically there is very little difference between substorm onsets and pseudo-breakups except for the degree of localization and the absence of a global expansion phase. A key open question is what physical mechanism prevents a pseudo-breakup form expanding globally. Using Polar Ultraviolet Imager (UVI) images, we identify periods of pseudo-breakup activity. Foe the data analyzed we find that most pseudo-breakups occur near local midnight, between magnetic local times of 21 and 03, at magnetic latitudes near 70 degrees, through this value may change by several degrees. While often discussed in the context of substorm growth phase events, pseudo-breakups are also shown to occur during prolonged relatively inactive periods. These quiet time pseudo-breakups can occur over a period of several hours without the development of a significant substorm for at least an hour after pseudo-breakup activity stops. In an attempt to understand the cause of quiet time pseudo-breakups, we compute the epsilon parameter as a measure of the efficiency of solar wind-magnetosphere coupling. It is noted that quiet time pseudo-breakups occur typically when epsilon is low; less than about 50 GW. We suggest that quiet time pseudo-breakups are driven by relatively small amounts of energy transferred to the magnetosphere by the solar wind insufficient to initiate a substorm expansion onset.

  15. An Improved Spectral Analysis Method for Fatigue Damage Assessment of Details in Liquid Cargo Tanks

    NASA Astrophysics Data System (ADS)

    Zhao, Peng-yuan; Huang, Xiao-ping

    2018-03-01

    Errors will be caused in calculating the fatigue damages of details in liquid cargo tanks by using the traditional spectral analysis method which is based on linear system, for the nonlinear relationship between the dynamic stress and the ship acceleration. An improved spectral analysis method for the assessment of the fatigue damage in detail of a liquid cargo tank is proposed in this paper. Based on assumptions that the wave process can be simulated by summing the sinusoidal waves in different frequencies and the stress process can be simulated by summing the stress processes induced by these sinusoidal waves, the stress power spectral density (PSD) is calculated by expanding the stress processes induced by the sinusoidal waves into Fourier series and adding the amplitudes of each harmonic component with the same frequency. This analysis method can take the nonlinear relationship into consideration and the fatigue damage is then calculated based on the PSD of stress. Take an independent tank in an LNG carrier for example, the accuracy of the improved spectral analysis method is proved much better than that of the traditional spectral analysis method by comparing the calculated damage results with the results calculated by the time domain method. The proposed spectral analysis method is more accurate in calculating the fatigue damages in detail of ship liquid cargo tanks.

  16. Variability of Pseudo-Nitzschia and Domoic Acid Along the U.S. West Coast

    NASA Astrophysics Data System (ADS)

    Wood, S.; Bill, B. D.; Trainer, V. L.

    2017-12-01

    A massive, destructive harmful algal bloom (HAB) along the U.S. West Coast in 2015 illustrated the threat posed to fisheries, marine mammal survival, and public health by toxigenic diatom Pseudo-nitzschia. Certain species of the genus Pseudo-nitzschia produce the neurotoxin domoic acid (DA), which can cause amnesic shellfish poisoning (ASP) in humans who consume shellfish contaminated with DA. The specific environmental conditions producing toxic algal blooms remain largely unclear. The continued assessment of the abundance and toxicity of Pseudo-nitzschia is used to identify emerging hotspots, investigate the occurrence of Pseudo-nitzschia and DA relative to environmental phenomena such as El Niño and the Blob, and make more robust the data that are incorporated into the HAB early-warning system. Seawater samples collected on NOAA research vessel Bell M. Shimada in May 2017 were analyzed in the laboratory using the following methods: 1. indirect cBASI Enzyme-linked Immunosorbent Assays (ELISAs) to determine DA concentration; 2. light microscopy to determine abundance of Pseudo-nitzschia; and 3. scanning electron microscopy to determine Pseudo-nitzschia species composition at select locations. Results indicated that freshwater plumes can affect the location and abundance of Pseudo-nitzschia at HAB hotspots near Heceta Bank. Future analysis will examine the potential connection between the abundance of toxic species of Pseudo-nitzschia with nutrient and chlorophyll data. This research adds to the time series data needed to determine the relative influence of various drivers of Pseudo-nitzschia blooms, including local factors such as macronutrient concentrations, and climatic influences such as El Niño, La Niña, and the Pacific Decadal Oscillation.

  17. [A new non-contact method based on relative spectral intensity for determining junction temperature of LED].

    PubMed

    Qiu, Xi-Zhen; Zhang, Fang-Hui

    2013-01-01

    The high-power white LED was prepared based on the high thermal conductivity aluminum, blue chips and YAG phosphor. By studying the spectral of different junction temperature, we found that the radiation spectrum of white LED has a minimum at 485 nm. The radiation intensity at this wavelength and the junction temperature show a good linear relationship. The LED junction temperature was measured based on the formula of relative spectral intensity and junction temperature. The result measured by radiation intensity method was compared with the forward voltage method and spectral method. The experiment results reveal that the junction temperature measured by this method was no more than 2 degrees C compared with the forward voltage method. It maintains the accuracy of the forward voltage method and overcomes the small spectral shift of spectral method, which brings the shortcoming on the results. It also had the advantages of practical, efficient and intuitive, noncontact measurement, and non-destruction to the lamp structure.

  18. Accelerated Adaptive Integration Method

    PubMed Central

    2015-01-01

    Conformational changes that occur upon ligand binding may be too slow to observe on the time scales routinely accessible using molecular dynamics simulations. The adaptive integration method (AIM) leverages the notion that when a ligand is either fully coupled or decoupled, according to λ, barrier heights may change, making some conformational transitions more accessible at certain λ values. AIM adaptively changes the value of λ in a single simulation so that conformations sampled at one value of λ seed the conformational space sampled at another λ value. Adapting the value of λ throughout a simulation, however, does not resolve issues in sampling when barriers remain high regardless of the λ value. In this work, we introduce a new method, called Accelerated AIM (AcclAIM), in which the potential energy function is flattened at intermediate values of λ, promoting the exploration of conformational space as the ligand is decoupled from its receptor. We show, with both a simple model system (Bromocyclohexane) and the more complex biomolecule Thrombin, that AcclAIM is a promising approach to overcome high barriers in the calculation of free energies, without the need for any statistical reweighting or additional processors. PMID:24780083

  19. Construction of the mathematical concept of pseudo thinking students

    NASA Astrophysics Data System (ADS)

    Anggraini, D.; Kusmayadi, T. A.; Pramudya, I.

    2018-05-01

    Thinking process is a process that begins with the acceptance of information, information processing and information calling in memory with structural changes that include concepts or knowledges. The concept or knowledge is individually constructed by each individual. While, students construct a mathematical concept, students may experience pseudo thinking. Pseudo thinking is a thinking process that results in an answer to a problem or construction to a concept “that is not true”. Pseudo thinking can be classified into two forms there are true pseudo and false pseudo. The construction of mathematical concepts in students of pseudo thinking should be immediately known because the error will have an impact on the next construction of mathematical concepts and to correct the errors it requires knowledge of the source of the error. Therefore, in this article will be discussed thinking process in constructing of mathematical concepts in students who experience pseudo thinking.

  20. The implementation of thermal image visualization by HDL based on pseudo-color

    NASA Astrophysics Data System (ADS)

    Zhu, Yong; Zhang, JiangLing

    2004-11-01

    The pseudo-color method which maps the sampled data to intuitive perception colors is a kind of powerful visualization way. And the all-around system of pseudo-color visualization, which includes the primary principle, model and HDL (Hardware Description Language) implementation for the thermal images, is expatiated on in the paper. The thermal images whose signal is modulated as video reflect the temperature distribution of measured object, so they have the speciality of mass and real-time. The solution to the intractable problem is as follows: First, the reasonable system, i.e. the combining of global pseudo-color visualization and local special area accurate measure, muse be adopted. Then, the HDL pseudo-color algorithms in SoC (System on Chip) carry out the system to ensure the real-time. Finally, the key HDL algorithms for direct gray levels connection coding, proportional gray levels map coding and enhanced gray levels map coding are presented, and its simulation results are showed. The pseudo-color visualization of thermal images implemented by HDL in the paper has effective application in the aspect of electric power equipment test and medical health diagnosis.

  1. A spectral method for spatial downscaling | Science Inventory ...

    EPA Pesticide Factsheets

    Complex computer models play a crucial role in air quality research. These models are used to evaluate potential regulatory impacts of emission control strategies and to estimate air quality in areas without monitoring data. For both of these purposes, it is important to calibrate model output with monitoring data to adjust for model biases and improve spatial prediction. In this paper, we propose a new spectral method to study and exploit complex relationships between model output and monitoring data. Spectral methods allow us to estimate the relationship between model output and monitoring data separately at different spatial scales, and to use model output for prediction only at the appropriate scales. The proposed method is computationally efficient and can be implemented using standard software. We apply the method to compare Community Multiscale Air Quality (CMAQ) model output with ozone measurements in the United States in July, 2005. We find that CMAQ captures large-scale spatial trends, but has low correlation with the monitoring data at small spatial scales. The National Exposure Research Laboratory′s (NERL′s)Atmospheric Modeling Division (AMAD) conducts research in support of EPA′s mission to protect human health and the environment. AMAD′s research program is engaged in developing and evaluating predictive atmospheric models on all spatial and temporal scales for forecasting the Nation′s air quality and for assessing ch

  2. Autoregressive Methods for Spectral Estimation from Interferograms.

    DTIC Science & Technology

    1986-09-19

    RL83 6?6 AUTOREGRESSIVE METHODS FOR SPECTRAL. ESTIMTION FROM / SPACE ENGINEERING E N RICHARDS ET AL. 19 SEPINEFRGAS.()UA TT NV GNCNE O C: 31SSF...was AUG1085 performed under subcontract to . Center for Space Engineering Utah State University Logan, UT 84322-4140 4 4 Scientific Report No. 17 AFGL...MONITORING ORGANIZATION Center for Space Engineering (iapplicable) Air Force Geophysics Laboratory e. AORESS (City. State and ZIP Code) 7b. AOORESS (City

  3. Joint image reconstruction method with correlative multi-channel prior for x-ray spectral computed tomography

    NASA Astrophysics Data System (ADS)

    Kazantsev, Daniil; Jørgensen, Jakob S.; Andersen, Martin S.; Lionheart, William R. B.; Lee, Peter D.; Withers, Philip J.

    2018-06-01

    Rapid developments in photon-counting and energy-discriminating detectors have the potential to provide an additional spectral dimension to conventional x-ray grayscale imaging. Reconstructed spectroscopic tomographic data can be used to distinguish individual materials by characteristic absorption peaks. The acquired energy-binned data, however, suffer from low signal-to-noise ratio, acquisition artifacts, and frequently angular undersampled conditions. New regularized iterative reconstruction methods have the potential to produce higher quality images and since energy channels are mutually correlated it can be advantageous to exploit this additional knowledge. In this paper, we propose a novel method which jointly reconstructs all energy channels while imposing a strong structural correlation. The core of the proposed algorithm is to employ a variational framework of parallel level sets to encourage joint smoothing directions. In particular, the method selects reference channels from which to propagate structure in an adaptive and stochastic way while preferring channels with a high data signal-to-noise ratio. The method is compared with current state-of-the-art multi-channel reconstruction techniques including channel-wise total variation and correlative total nuclear variation regularization. Realistic simulation experiments demonstrate the performance improvements achievable by using correlative regularization methods.

  4. Methods Development for Spectral Simplification of Room-Temperature Rotational Spectra

    NASA Astrophysics Data System (ADS)

    Kent, Erin B.; Shipman, Steven

    2014-06-01

    Room-temperature rotational spectra are dense and difficult to assign, and so we have been working to develop methods to accelerate this process. We have tested two different methods with our waveguide-based spectrometer, which operates from 8.7 to 26.5 GHz. The first method, based on previous work by Medvedev and De Lucia, was used to estimate lower state energies of transitions by performing relative intensity measurements at a range of temperatures between -20 and +50 °C. The second method employed hundreds of microwave-microwave double resonance measurements to determine level connectivity between rotational transitions. The relative intensity measurements were not particularly successful in this frequency range (the reasons for this will be discussed), but the information gleaned from the double-resonance measurements can be incorporated into other spectral search algorithms (such as autofit or genetic algorithm approaches) via scoring or penalty functions to help with the spectral assignment process. I.R. Medvedev, F.C. De Lucia, Astrophys. J. 656, 621-628 (2007).

  5. Coupling finite element and spectral methods: First results

    NASA Technical Reports Server (NTRS)

    Bernardi, Christine; Debit, Naima; Maday, Yvon

    1987-01-01

    A Poisson equation on a rectangular domain is solved by coupling two methods: the domain is divided in two squares, a finite element approximation is used on the first square and a spectral discretization is used on the second one. Two kinds of matching conditions on the interface are presented and compared. In both cases, error estimates are proved.

  6. Inhomogeneous Weyl and Dirac Semimetals: Transport in Axial Magnetic Fields and Fermi Arc Surface States from Pseudo-Landau Levels

    NASA Astrophysics Data System (ADS)

    Grushin, Adolfo G.; Venderbos, Jörn W. F.; Vishwanath, Ashvin; Ilan, Roni

    2016-10-01

    Topological Dirac and Weyl semimetals have an energy spectrum that hosts Weyl nodes appearing in pairs of opposite chirality. Topological stability is ensured when the nodes are separated in momentum space and unique spectral and transport properties follow. In this work, we study the effect of a space-dependent Weyl node separation, which we interpret as an emergent background axial-vector potential, on the electromagnetic response and the energy spectrum of Weyl and Dirac semimetals. This situation can arise in the solid state either from inhomogeneous strain or nonuniform magnetization and can also be engineered in cold atomic systems. Using a semiclassical approach, we show that the resulting axial magnetic field B5 is observable through an enhancement of the conductivity as σ ˜B52 due to an underlying chiral pseudomagnetic effect. We then use two lattice models to analyze the effect of B5 on the spectral properties of topological semimetals. We describe the emergent pseudo-Landau-level structure for different spatial profiles of B5, revealing that (i) the celebrated surface states of Weyl semimetals, the Fermi arcs, can be reinterpreted as n =0 pseudo-Landau levels resulting from a B5 confined to the surface, (ii) as a consequence of position-momentum locking, a bulk B5 creates pseudo-Landau levels interpolating in real space between Fermi arcs at opposite surfaces, and (iii) there are equilibrium bound currents proportional to B5 that average to zero over the sample, which are the analogs of bound currents in magnetic materials. We conclude by discussing how our findings can be probed experimentally.

  7. Numerical Modeling of 3D Seismic Wave Propagation around Yogyakarta, the Southern Part of Central Java, Indonesia, Using Spectral-Element Method on MPI-GPU Cluster

    NASA Astrophysics Data System (ADS)

    Sudarmaji; Rudianto, Indra; Eka Nurcahya, Budi

    2018-04-01

    A strong tectonic earthquake with a magnitude of 5.9 Richter scale has been occurred in Yogyakarta and Central Java on May 26, 2006. The earthquake has caused severe damage in Yogyakarta and the southern part of Central Java, Indonesia. The understanding of seismic response of earthquake among ground shaking and the level of building damage is important. We present numerical modeling of 3D seismic wave propagation around Yogyakarta and the southern part of Central Java using spectral-element method on MPI-GPU (Graphics Processing Unit) computer cluster to observe its seismic response due to the earthquake. The homogeneous 3D realistic model is generated with detailed topography surface. The influences of free surface topography and layer discontinuity of the 3D model among the seismic response are observed. The seismic wave field is discretized using spectral-element method. The spectral-element method is solved on a mesh of hexahedral elements that is adapted to the free surface topography and the internal discontinuity of the model. To increase the data processing capabilities, the simulation is performed on a GPU cluster with implementation of MPI (Message Passing Interface).

  8. Time delay estimation using new spectral and adaptive filtering methods with applications to underwater target detection

    NASA Astrophysics Data System (ADS)

    Hasan, Mohammed A.

    1997-11-01

    of the method is demonstrated on the problem of detection of multiple specular components in the acoustic backscattered data. Finally, a method for the estimation of time delays using wavelet decomposition is derived. The sub-band adaptive filtering uses discrete wavelet transform for multi- resolution or sub-band decomposition. Joint time delay estimation for identifying multi-specular components and subsequent adaptive filtering processes are performed on the signal in each sub-band. This would provide multiple 'look' of the signal at different resolution scale which results in more accurate estimates for delays associated with the specular components. Simulation results on the simulated and real shallow water data are provided which show the promise of this new scheme for target detection in a heavy cluttered environment.

  9. A point-by-point multi-scale surface temperature reconstruction method and tests by pseudo proxy experiments

    NASA Astrophysics Data System (ADS)

    Chen, X.

    2016-12-01

    This study present a multi-scale approach combining Mode Decomposition and Variance Matching (MDVM) method and basic process of Point-by-Point Regression (PPR) method. Different from the widely applied PPR method, the scanning radius for each grid box, were re-calculated considering the impact from topography (i.e. mean altitudes and fluctuations). Thus, appropriate proxy records were selected to be candidates for reconstruction. The results of this multi-scale methodology could not only provide the reconstructed gridded temperature, but also the corresponding uncertainties of the four typical timescales. In addition, this method can bring in another advantage that spatial distribution of the uncertainty for different scales could be quantified. To interpreting the necessity of scale separation in calibration, with proxy records location over Eastern Asia, we perform two sets of pseudo proxy experiments (PPEs) based on different ensembles of climate model simulation. One consist of 7 simulated results by 5 models (BCC-CSM1-1, CSIRO-MK3L-1-2, HadCM3, MPI-ESM-P, and Giss-E2-R) of the "past1000" simulation from Coupled Model Intercomparison Project Phase 5. The other is based on the simulations of Community Earth System Model Last Millennium Ensemble (CESM-LME). The pseudo-records network were obtained by adding the white noise with signal-to-noise ratio (SNR) increasing from 0.1 to 1.0 to the simulated true state and the locations mainly followed the PAGES-2k network in Asia. Totally, 400 years (1601-2000) simulation was used for calibration and 600 years (1001-1600) for verification. The reconstructed results were evaluated by three metrics 1) root mean squared error (RMSE), 2) correlation and 3) reduction of error (RE) score. The PPE verification results have shown that, in comparison with ordinary linear calibration method (variance matching), the RMSE and RE score of PPR-MDVM are improved, especially for the area with sparse proxy records. To be noted, in some

  10. Investigation of computational and spectral analysis methods for aeroacoustic wave propagation

    NASA Technical Reports Server (NTRS)

    Vanel, Florence O.

    1995-01-01

    Most computational fluid dynamics (CFD) schemes are not adequately accurate for solving aeroacoustics problems, which have wave amplitudes several orders of magnitude smaller yet with frequencies larger than the flow field variations generating the sound. Hence, a computational aeroacoustics (CAA) algorithm should have minimal dispersion and dissipation features. A dispersion relation preserving (DRP) scheme is, therefore, applied to solve the linearized Euler equations in order to simulate the propagation of three types of waves, namely: acoustic, vorticity, and entropy waves. The scheme is derived using an optimization procedure to ensure that the numerical derivatives preserve the wave number and angular frequency of the partial differential equations being discretized. Consequently, simulated waves propagate with the correct wave speeds and exhibit their appropriate properties. A set of radiation and outflow boundary conditions, compatible with the DRP scheme and derived from the asymptotic solutions of the governing equations, are also implemented. Numerical simulations are performed to test the effectiveness of the DRP scheme and its boundary conditions. The computed solutions are shown to agree favorably with the exact solutions. The major restriction appears to be that the dispersion relations can be preserved only for waves with wave lengths longer than four or five spacings. The boundary conditions are found to be transparent to the outgoing disturbances. However, when the disturbance source is placed closer to a boundary, small acoustic reflections start appearing. CAA generates enormous amounts of temporal data which needs to be reduced to understand the physical problem being simulated. Spectral analysis is one approach that helps us in extracting information which often can not be easily interpreted in the time domain. Thus, three different methods for the spectral analysis of numerically generated aeroacoustic data are studied. First, the

  11. A hybrid spatial-spectral denoising method for infrared hyperspectral images using 2DPCA

    NASA Astrophysics Data System (ADS)

    Huang, Jun; Ma, Yong; Mei, Xiaoguang; Fan, Fan

    2016-11-01

    The traditional noise reduction methods for 3-D infrared hyperspectral images typically operate independently in either the spatial or spectral domain, and such methods overlook the relationship between the two domains. To address this issue, we propose a hybrid spatial-spectral method in this paper to link both domains. First, principal component analysis and bivariate wavelet shrinkage are performed in the 2-D spatial domain. Second, 2-D principal component analysis transformation is conducted in the 1-D spectral domain to separate the basic components from detail ones. The energy distribution of noise is unaffected by orthogonal transformation; therefore, the signal-to-noise ratio of each component is used as a criterion to determine whether a component should be protected from over-denoising or denoised with certain 1-D denoising methods. This study implements the 1-D wavelet shrinking threshold method based on Stein's unbiased risk estimator, and the quantitative results on publicly available datasets demonstrate that our method can improve denoising performance more effectively than other state-of-the-art methods can.

  12. Binary pseudo-random patterned structures for modulation transfer function calibration and resolution characterization of a full-field transmission soft x-ray microscope

    DOE PAGES

    Yashchuk, V. V.; Fischer, P. J.; Chan, E. R.; ...

    2015-12-09

    We present a modulation transfer function (MTF) calibration method based on binary pseudo-random (BPR) one-dimensional sequences and two-dimensional arrays as an effective method for spectral characterization in the spatial frequency domain of a broad variety of metrology instrumentation, including interferometric microscopes, scatterometers, phase shifting Fizeau interferometers, scanning and transmission electron microscopes, and at this time, x-ray microscopes. The inherent power spectral density of BPR gratings and arrays, which has a deterministic white-noise-like character, allows a direct determination of the MTF with a uniform sensitivity over the entire spatial frequency range and field of view of an instrument. We demonstrate themore » MTF calibration and resolution characterization over the full field of a transmission soft x-ray microscope using a BPR multilayer (ML) test sample with 2.8 nm fundamental layer thickness. We show that beyond providing a direct measurement of the microscope's MTF, tests with the BPRML sample can be used to fine tune the instrument's focal distance. Finally, our results confirm the universality of the method that makes it applicable to a large variety of metrology instrumentation with spatial wavelength bandwidths from a few nanometers to hundreds of millimeters.« less

  13. Assessment of the Spectral Stability of Libya 4, Libya 1, and Mauritania 2 Sites Using Earth Observing One Hyperion

    NASA Technical Reports Server (NTRS)

    Choi, Taeyoung; Xiong, Xiaoxiong; Angal, Amit; Chander, Gyanesh; Qu, John J.

    2014-01-01

    The objective of this paper is to formulate a methodology to assess the spectral stability of the Libya 4, Libya 1, and Mauritania 2 pseudo-invariant calibration sites (PICS) using Earth Observing One (EO-1) Hyperion sensor. All the available Hyperion collections, downloaded from the Earth Explorer website, were utilized for the three PICS. In each site, a reference spectrum is selected at a specific day in the vicinity of the region of interest (ROI) defined by Committee on Earth Observation Satellites (CEOS). A series of ROIs are predefined in the along-track direction with 196 spectral top-of-atmosphere reflectance values in each ROI. Based on the reference ROI spectrum, the spectral stability of these ROIs is evaluated by average deviations (ADs) and spectral angle mapper (SAM) methods in the specific ranges of time and geo-spatial locations. Time and ROI location-dependent SAM and AD results are very stable within +/- 2 deg and +/-1.7% of 1sigma standard deviations. Consequently, the Libya 4, Mauritania 2, and Libya 1 CEOS selected PICS are spectrally stable targets within the time and spatial swath ranges of the Hyperion collections.

  14. Rapid screening of guar gum using portable Raman spectral identification methods.

    PubMed

    Srivastava, Hirsch K; Wolfgang, Steven; Rodriguez, Jason D

    2016-01-25

    Guar gum is a well-known inactive ingredient (excipient) used in a variety of oral pharmaceutical dosage forms as a thickener and stabilizer of suspensions and as a binder of powders. It is also widely used as a food ingredient in which case alternatives with similar properties, including chemically similar gums, are readily available. Recent supply shortages and price fluctuations have caused guar gum to come under increasing scrutiny for possible adulteration by substitution of cheaper alternatives. One way that the U.S. FDA is attempting to screen pharmaceutical ingredients at risk for adulteration or substitution is through field-deployable spectroscopic screening. Here we report a comprehensive approach to evaluate two field-deployable Raman methods--spectral correlation and principal component analysis--to differentiate guar gum from other gums. We report a comparison of the sensitivity of the spectroscopic screening methods with current compendial identification tests. The ability of the spectroscopic methods to perform unambiguous identification of guar gum compared to other gums makes them an enhanced surveillance alternative to the current compendial identification tests, which are largely subjective in nature. Our findings indicate that Raman spectral identification methods perform better than compendial identification methods and are able to distinguish guar gum from other gums with 100% accuracy for samples tested by spectral correlation and principal component analysis. Published by Elsevier B.V.

  15. Tube wave signatures in cylindrically layered poroelastic media computed with spectral method

    NASA Astrophysics Data System (ADS)

    Karpfinger, Florian; Gurevich, Boris; Valero, Henri-Pierre; Bakulin, Andrey; Sinha, Bikash

    2010-11-01

    This paper describes a new algorithm based on the spectral method for the computation of Stoneley wave dispersion and attenuation propagating in cylindrical structures composed of fluid, elastic and poroelastic layers. The spectral method is a numerical method which requires discretization of the structure along the radial axis using Chebyshev points. To approximate the differential operators of the underlying differential equations, we use spectral differentiation matrices. After discretizing equations of motion along the radial direction, we can solve the problem as a generalized algebraic eigenvalue problem. For a given frequency, calculated eigenvalues correspond to the wavenumbers of different modes. The advantage of this approach is that it can very efficiently analyse structures with complicated radial layering composed of different fluid, solid and poroelastic layers. This work summarizes the fundamental equations, followed by an outline of how they are implemented in the numerical spectral schema. The interface boundary conditions are then explained for fluid/porous, elastic/porous and porous interfaces. Finally, we discuss three examples from borehole acoustics. The first model is a fluid-filled borehole surrounded by a poroelastic formation. The second considers an additional elastic layer sandwiched between the borehole and the formation, and finally a model with radially increasing permeability is considered.

  16. Spectral-Element Simulations of Wave Propagation in Porous Media: Finite-Frequency Sensitivity Kernels Based Upon Adjoint Methods

    NASA Astrophysics Data System (ADS)

    Morency, C.; Tromp, J.

    2008-12-01

    The mathematical formulation of wave propagation in porous media developed by Biot is based upon the principle of virtual work, ignoring processes at the microscopic level, and does not explicitly incorporate gradients in porosity. Based on recent studies focusing on averaging techniques, we derive the macroscopic porous medium equations from the microscale, with a particular emphasis on the effects of gradients in porosity. In doing so, we are able to naturally determine two key terms in the momentum equations and constitutive relationships, directly translating the coupling between the solid and fluid phases, namely a drag force and an interfacial strain tensor. In both terms, gradients in porosity arise. One remarkable result is that when we rewrite this set of equations in terms of the well known Biot variables us, w), terms involving gradients in porosity are naturally accommodated by gradients involving w, the fluid motion relative to the solid, and Biot's formulation is recovered, i.e., it remains valid in the presence of porosity gradients We have developed a numerical implementation of the Biot equations for two-dimensional problems based upon the spectral-element method (SEM) in the time domain. The SEM is a high-order variational method, which has the advantage of accommodating complex geometries like a finite-element method, while keeping the exponential convergence rate of (pseudo)spectral methods. As in the elastic and acoustic cases, poroelastic wave propagation based upon the SEM involves a diagonal mass matrix, which leads to explicit time integration schemes that are well-suited to simulations on parallel computers. Effects associated with physical dispersion & attenuation and frequency-dependent viscous resistance are addressed by using a memory variable approach. Various benchmarks involving poroelastic wave propagation in the high- and low-frequency regimes, and acoustic-poroelastic and poroelastic-poroelastic discontinuities have been

  17. A case of mixed connective tissue disease with pseudo-pseudo Meigs' syndrome (PPMS)-like features.

    PubMed

    Cheah, C K; Ramanujam, S; Mohd Noor, N; Gandhi, C; D Souza, Beryl A; Gun, S C

    2016-02-01

    Pseudo-pseudo Meigs' syndrome (PPMS) has been reported to be a rare presentation of patients with systemic lupus erythematosus (SLE). However, such a presentation is not common in other forms of connective tissue disease. We presented a case of gross ascites, pleural effusion, and marked elevation of CA-125 level (PPMS-like features) that led to a diagnosis of MCTD. The patient responded to systemic steroid therapy. © The Author(s) 2015.

  18. Chebyshev polynomials in the spectral Tau method and applications to Eigenvalue problems

    NASA Technical Reports Server (NTRS)

    Johnson, Duane

    1996-01-01

    Chebyshev Spectral methods have received much attention recently as a technique for the rapid solution of ordinary differential equations. This technique also works well for solving linear eigenvalue problems. Specific detail is given to the properties and algebra of chebyshev polynomials; the use of chebyshev polynomials in spectral methods; and the recurrence relationships that are developed. These formula and equations are then applied to several examples which are worked out in detail. The appendix contains an example FORTRAN program used in solving an eigenvalue problem.

  19. Pseudo Gitelman Syndrome Associated With Pregnancy.

    PubMed

    Yoshihara, Masato; Sayo, Akira; Mayama, Michinori; Oguchi, Hidenori

    2015-10-01

    Gitelman syndrome is a rare inherited renal tubulopathy associated with metabolic alkalosis and electrolyte disorders. Pseudo Gitelman syndrome presents with the same clinical characteristics as Gitelman syndrome, yet without genetic mutations in SLC12A3. A 32-year-old woman with no remarkable medical and family history developed hypokalemia at 32 weeks of gestation. Laboratory findings were consistent with Gitelman syndrome and potassium supplementation was initiated. The patient delivered a healthy neonate at 40 weeks of gestation and the electrolyte disorders drastically improved. After delivery, genomic analysis revealed no evidence of mutations in SLC12A3, and pseudo Gitelman syndrome was finally diagnosed. Pseudo Gitelman syndrome, presenting with Gitelman syndrome-like renal tubulopathy without mutations in SLC12A3, can cause a temporary electrolyte imbalance based on the physiologic changes of pregnancy. Although pregnant women with isolated hypokalemia need not be evaluated for Gitelman or pseudo Gitelman syndrome, if it is accompanied by metabolic alkalosis, hypocalciuria, hypomagnesia, and activation of the renin-angiotensin-aldosterone system without hypertension, this evaluation should be considered.

  20. Effective numerical method of spectral analysis of quantum graphs

    NASA Astrophysics Data System (ADS)

    Barrera-Figueroa, Víctor; Rabinovich, Vladimir S.

    2017-05-01

    We present in the paper an effective numerical method for the determination of the spectra of periodic metric graphs equipped by Schrödinger operators with real-valued periodic electric potentials as Hamiltonians and with Kirchhoff and Neumann conditions at the vertices. Our method is based on the spectral parameter power series method, which leads to a series representation of the dispersion equation, which is suitable for both analytical and numerical calculations. Several important examples demonstrate the effectiveness of our method for some periodic graphs of interest that possess potentials usually found in quantum mechanics.

  1. VALIDATION OF A CLINICAL ASSESSMENT OF SPECTRAL RIPPLE RESOLUTION FOR COCHLEAR-IMPLANT USERS

    PubMed Central

    Drennan, Ward. R.; Anderson, Elizabeth S.; Won, Jong Ho; Rubinstein, Jay T.

    2013-01-01

    Objectives Non-speech psychophysical tests of spectral resolution, such as the spectral-ripple discrimination task, have been shown to correlate with speech recognition performance in cochlear implant (CI) users (Henry et al., 2005; Won et al. 2007, 2011; Drennan et al. 2008; Anderson et al. 2011). However, these tests are best suited for use in the research laboratory setting and are impractical for clinical use. A test of spectral resolution that is quicker and could more easily be implemented in the clinical setting has been developed. The objectives of this study were 1) To determine if this new clinical ripple test would yield individual results equivalent to the longer, adaptive version of the ripple discrimination test; 2) To evaluate test-retest reliability for the clinical ripple measure; and 3) To examine the relationship between clinical ripple performance and monosyllabic word recognition in quiet for a group of CI listeners. Design Twenty-eight CI recipients participated in the study. Each subject was tested on both the adaptive and the clinical versions of spectral ripple discrimination, as well as CNC word recognition in quiet. The adaptive version of spectral ripple employed a 2-up, 1-down procedure for determining spectral ripple discrimination threshold. The clinical ripple test used a method of constant stimuli, with trials for each of 12 fixed ripple densities occurring six times in random order. Results from the clinical ripple test (proportion correct) were then compared to ripple discrimination thresholds (in ripples per octave) from the adaptive test. Results The clinical ripple test showed strong concurrent validity, evidenced by a good correlation between clinical ripple and adaptive ripple results (r=0.79), as well as a correlation with word recognition (r = 0.7). Excellent test-retest reliability was also demonstrated with a high test-retest correlation (r = 0.9). Conclusions The clinical ripple test is a reliable non-linguistic measure

  2. Quantitative method to assess caries via fluorescence imaging from the perspective of autofluorescence spectral analysis

    NASA Astrophysics Data System (ADS)

    Chen, Q. G.; Zhu, H. H.; Xu, Y.; Lin, B.; Chen, H.

    2015-08-01

    A quantitative method to discriminate caries lesions for a fluorescence imaging system is proposed in this paper. The autofluorescence spectral investigation of 39 teeth samples classified by the International Caries Detection and Assessment System levels was performed at 405 nm excitation. The major differences in the different caries lesions focused on the relative spectral intensity range of 565-750 nm. The spectral parameter, defined as the ratio of wavebands at 565-750 nm to the whole spectral range, was calculated. The image component ratio R/(G + B) of color components was statistically computed by considering the spectral parameters (e.g. autofluorescence, optical filter, and spectral sensitivity) in our fluorescence color imaging system. Results showed that the spectral parameter and image component ratio presented a linear relation. Therefore, the image component ratio was graded as <0.66, 0.66-1.06, 1.06-1.62, and >1.62 to quantitatively classify sound, early decay, established decay, and severe decay tissues, respectively. Finally, the fluorescence images of caries were experimentally obtained, and the corresponding image component ratio distribution was compared with the classification result. A method to determine the numerical grades of caries using a fluorescence imaging system was proposed. This method can be applied to similar imaging systems.

  3. Adaptive Finite Element Methods for Continuum Damage Modeling

    NASA Technical Reports Server (NTRS)

    Min, J. B.; Tworzydlo, W. W.; Xiques, K. E.

    1995-01-01

    The paper presents an application of adaptive finite element methods to the modeling of low-cycle continuum damage and life prediction of high-temperature components. The major objective is to provide automated and accurate modeling of damaged zones through adaptive mesh refinement and adaptive time-stepping methods. The damage modeling methodology is implemented in an usual way by embedding damage evolution in the transient nonlinear solution of elasto-viscoplastic deformation problems. This nonlinear boundary-value problem is discretized by adaptive finite element methods. The automated h-adaptive mesh refinements are driven by error indicators, based on selected principal variables in the problem (stresses, non-elastic strains, damage, etc.). In the time domain, adaptive time-stepping is used, combined with a predictor-corrector time marching algorithm. The time selection is controlled by required time accuracy. In order to take into account strong temperature dependency of material parameters, the nonlinear structural solution a coupled with thermal analyses (one-way coupling). Several test examples illustrate the importance and benefits of adaptive mesh refinements in accurate prediction of damage levels and failure time.

  4. Stability analysis of spectral methods for hyperbolic initial-boundary value systems

    NASA Technical Reports Server (NTRS)

    Gottlieb, D.; Lustman, L.; Tadmor, E.

    1986-01-01

    A constant coefficient hyperbolic system in one space variable, with zero initial data is discussed. Dissipative boundary conditions are imposed at the two points x = + or - 1. This problem is discretized by a spectral approximation in space. Sufficient conditions under which the spectral numerical solution is stable are demonstrated - moreover, these conditions have to be checked only for scalar equations. The stability theorems take the form of explicit bounds for the norm of the solution in terms of the boundary data. The dependence of these bounds on N, the number of points in the domain (or equivalently the degree of the polynomials involved), is investigated for a class of standard spectral methods, including Chebyshev and Legendre collocations.

  5. Development and Validation of a New Fallout Transport Method Using Variable Spectral Winds

    NASA Astrophysics Data System (ADS)

    Hopkins, Arthur Thomas

    A new method has been developed to incorporate variable winds into fallout transport calculations. The method uses spectral coefficients derived by the National Meteorological Center. Wind vector components are computed with the coefficients along the trajectories of falling particles. Spectral winds are used in the two-step method to compute dose rate on the ground, downwind of a nuclear cloud. First, the hotline is located by computing trajectories of particles from an initial, stabilized cloud, through spectral winds, to the ground. The connection of particle landing points is the hotline. Second, dose rate on and around the hotline is computed by analytically smearing the falling cloud's activity along the ground. The feasibility of using specgtral winds for fallout particle transport was validated by computing Mount St. Helens ashfall locations and comparing calculations to fallout data. In addition, an ashfall equation was derived for computing volcanic ash mass/area on the ground. Ashfall data and the ashfall equation were used to back-calculate an aggregated particle size distribution for the Mount St. Helens eruption cloud. Further validation was performed by comparing computed and actual trajectories of a high explosive dust cloud (DIRECT COURSE). Using an error propagation formula, it was determined that uncertainties in spectral wind components produce less than four percent of the total dose rate variance. In summary, this research demonstrated the feasibility of using spectral coefficients for fallout transport calculations, developed a two-step smearing model to treat variable winds, and showed that uncertainties in spectral winds do not contribute significantly to the error in computed dose rate.

  6. Modeling Adaptive Educational Methods with IMS Learning Design

    ERIC Educational Resources Information Center

    Specht, Marcus; Burgos, Daniel

    2007-01-01

    The paper describes a classification system for adaptive methods developed in the area of adaptive educational hypermedia based on four dimensions: What components of the educational system are adapted? To what features of the user and the current context does the system adapt? Why does the system adapt? How does the system get the necessary…

  7. An Analysis on a Dynamic Amplifier and Calibration Methods for a Pseudo-Differential Dynamic Comparator

    NASA Astrophysics Data System (ADS)

    Paik, Daehwa; Miyahara, Masaya; Matsuzawa, Akira

    This paper analyzes a pseudo-differential dynamic comparator with a dynamic pre-amplifier. The transient gain of a dynamic pre-amplifier is derived and applied to equations of the thermal noise and the regeneration time of a comparator. This analysis enhances understanding of the roles of transistor's parameters in pre-amplifier's gain. Based on the calculated gain, two calibration methods are also analyzed. One is calibration of a load capacitance and the other is calibration of a bypass current. The analysis helps designers' estimation for the accuracy of calibration, dead-zone of a comparator with a calibration circuit, and the influence of PVT variation. The analyzed comparator uses 90-nm CMOS technology as an example and each estimation is compared with simulation results.

  8. Sensitivity of high-spectral resolution and broadband thermal infrared nadir instruments to the chemical and microphysical properties of secondary sulfate aerosols in the upper-troposphere/lower-stratosphere

    NASA Astrophysics Data System (ADS)

    Sellitto, Pasquale; Legras, Bernard

    2016-04-01

    The observation of upper-tropospheric/lower-stratospheric (UTLS) secondary sulfate aerosols (SSA) and their chemical and microphysical properties from satellite nadir observations (with better spatial resolution than limb observations) is a fundamental tool to better understand their formation and evolution processes and then to estimate their impact on UTLS chemistry, and on regional and global radiative balance. Thermal infrared (TIR) observations are sensitive to the chemical composition of the aerosols due to the strong spectral variations of the imaginary part of the refractive index in this band and, correspondingly, of the absorption, as a function of the composition Then, these observations are, in principle, well adapted to detect and characterize UTLS SSA. Unfortunately, the exploitation of nadir TIR observations for sulfate aerosol layer monitoring is today very limited. Here we present a study aimed at the evaluation of the sensitivity of TIR satellite nadir observations to the chemical composition and the size distribution of idealised UTLS SSA layers. The sulfate aerosol particles are assumed as binary systems of sulfuric acid/water solution droplets, with varying sulphuric acid mixing ratios. The extinction properties of the SSA, for different sulfuric acid mixing ratios and temperatures, are systematically analysed. The extinction coefficients are derived by means of a Mie code, using refractive indices taken from the GEISA (Gestion et Étude des Informations Spectroscopiques Atmosphériques: Management and Study of Spectroscopic Information) spectroscopic database and log-normal size distributions with different effective radii and number concentrations. High-spectral resolution pseudo-observations are generated using forward radiative transfer calculations performed with the 4A (Automatized Atmospheric Absorption Atlas) radiative transfer model, to estimate the impact of the extinction of idealised aerosol layers, at typical UTLS conditions, on

  9. Domain decomposition methods for systems of conservation laws: Spectral collocation approximations

    NASA Technical Reports Server (NTRS)

    Quarteroni, Alfio

    1989-01-01

    Hyperbolic systems of conversation laws are considered which are discretized in space by spectral collocation methods and advanced in time by finite difference schemes. At any time-level a domain deposition method based on an iteration by subdomain procedure was introduced yielding at each step a sequence of independent subproblems (one for each subdomain) that can be solved simultaneously. The method is set for a general nonlinear problem in several space variables. The convergence analysis, however, is carried out only for a linear one-dimensional system with continuous solutions. A precise form of the error reduction factor at each iteration is derived. Although the method is applied here to the case of spectral collocation approximation only, the idea is fairly general and can be used in a different context as well. For instance, its application to space discretization by finite differences is straight forward.

  10. A spectral measurement method for determining white OLED average junction temperatures

    NASA Astrophysics Data System (ADS)

    Zhu, Yiting; Narendran, Nadarajah

    2016-09-01

    The objective of this study was to investigate an indirect method of measuring the average junction temperature of a white organic light-emitting diode (OLED) based on temperature sensitivity differences in the radiant power emitted by individual emitter materials (i.e., "blue," "green," and "red"). The measured spectral power distributions (SPDs) of the white OLED as a function of temperature showed amplitude decrease as a function of temperature in the different spectral bands, red, green, and blue. Analyzed data showed a good linear correlation between the integrated radiance for each spectral band and the OLED panel temperature, measured at a reference point on the back surface of the panel. The integrated radiance ratio of the spectral band green compared to red, (G/R), correlates linearly with panel temperature. Assuming that the panel reference point temperature is proportional to the average junction temperature of the OLED panel, the G/R ratio can be used for estimating the average junction temperature of an OLED panel.

  11. Pseudo-beam method for compressive buckling characteristics analysis of space inflatable load-carrying structures

    NASA Astrophysics Data System (ADS)

    Wang, Changguo; Tan, Huifeng; Du, Xingwen

    2009-10-01

    This paper extends Le van’s work to the case of nonlinear problem and the complicated configuration. The wrinkling stress distribution and the pressure effects are also included in our analysis. Pseudo-beam method is presented based on the inflatable beam theory to model the inflatable structures as a set of inflatable beam elements with a pre-stressed state. In this method, the discretized nonlinear equations are given based upon the virtual work principle with a 3-node Timoshenko’s beam model. Finite element simulation is performed by using a 3-node BEAM189 element incorporating ANSYS nonlinear program. The pressure effect is equivalent included in our method by modifying beam element cross-section parameters related to pressure. A benchmark example, the bending case of an inflatable cantilever beam, is performed to verify the accuracy of our proposed method. The comparisons reveal that the numerical results obtained with our method are close to open published analytical and membrane finite element results. The method is then used to evaluate the whole buckling and the load-carrying characteristics of an inflatable support frame subjected to a compression force. The wrinkling stress and region characteristics are also shown in the end. This method gives better convergence characteristics, and requires much less computation time. It is very effective to deal with the whole load-carrying ability analytical problems for large scale inflatable structures with complex configuration.

  12. A complex guided spectral transform Lanczos method for studying quantum resonance states

    DOE PAGES

    Yu, Hua-Gen

    2014-12-28

    A complex guided spectral transform Lanczos (cGSTL) algorithm is proposed to compute both bound and resonance states including energies, widths and wavefunctions. The algorithm comprises of two layers of complex-symmetric Lanczos iterations. A short inner layer iteration produces a set of complex formally orthogonal Lanczos (cFOL) polynomials. They are used to span the guided spectral transform function determined by a retarded Green operator. An outer layer iteration is then carried out with the transform function to compute the eigen-pairs of the system. The guided spectral transform function is designed to have the same wavefunctions as the eigenstates of the originalmore » Hamiltonian in the spectral range of interest. Therefore the energies and/or widths of bound or resonance states can be easily computed with their wavefunctions or by using a root-searching method from the guided spectral transform surface. The new cGSTL algorithm is applied to bound and resonance states of HO₂, and compared to previous calculations.« less

  13. The gravitational wave stress–energy (pseudo)-tensor in modified gravity

    NASA Astrophysics Data System (ADS)

    Saffer, Alexander; Yunes, Nicolás; Yagi, Kent

    2018-03-01

    The recent detections of gravitational waves by the advanced LIGO and Virgo detectors open up new tests of modified gravity theories in the strong-field and dynamical, extreme gravity regime. Such tests rely sensitively on the phase evolution of the gravitational waves, which is controlled by the energy–momentum carried by such waves out of the system. We here study four different methods for finding the gravitational wave stress–energy pseudo-tensor in gravity theories with any combination of scalar, vector, or tensor degrees of freedom. These methods rely on the second variation of the action under short-wavelength averaging, the second perturbation of the field equations in the short-wavelength approximation, the construction of an energy complex leading to a Landau–Lifshitz tensor, and the use of Noether’s theorem in field theories about a flat background. We apply these methods in general relativity, Jordan–Fierz–Brans–Dicky theoy, and Einstein-Æther theory to find the gravitational wave stress–energy pseudo-tensor and calculate the rate at which energy and linear momentum is carried away from the system. The stress–energy tensor and the rate of linear momentum loss in Einstein-Æther theory are presented here for the first time. We find that all methods yield the same rate of energy loss, although the stress–energy pseudo-tensor can be functionally different. We also find that the Noether method yields a stress–energy tensor that is not symmetric or gauge-invariant, and symmetrization via the Belinfante procedure does not fix these problems because this procedure relies on Lorentz invariance, which is spontaneously broken in Einstein-Æther theory. The methods and results found here will be useful for the calculation of predictions in modified gravity theories that can then be contrasted with observations.

  14. Performance of fluorescence retrieval methods and fluorescence spectrum reconstruction under various sensor spectral configurations

    NASA Astrophysics Data System (ADS)

    Li, Rong; Zhao, Feng

    2015-10-01

    Solar-induced chlorophyll fluorescence is closely related to photosynthesis and can serve as an indicator of plant status. Several methods have been proposed to retrieve fluorescence signal (Fs) either at specific spectral bands or within the whole fluorescence emission region. In this study, we investigated the precision of the fluorescence signal obtained through these methods under various sensor spectral characteristics. Simulated datasets generated by the SCOPE (Soil Canopy Observation, Photochemistry and Energy fluxes) model with known `true' Fs as well as an experimental dataset are exploited to investigate four commonly used Fs retrieval methods, namely the original Fraunhofer Line Discriminator method (FLD), the 3 bands FLD (3FLD), the improved FLD (iFLD), and the Spectral Fitting Methods (SFMs). Fluorescence Spectrum Reconstruction (FSR) method is also investigated using simulated datasets. The sensor characteristics of spectral resolution (SR) and signal-to-noise ratio (SNR) are taken into account. According to the results, finer SR and SNR both lead to better accuracy. Lowest precision is obtained for the FLD method with strong overestimation. Some improvements are made by the 3FLD method, but it still tends to overestimate. Generally, the iFLD method and the SFMs provide better accuracy. As to FSR, the shape and magnitude of reconstructed Fs are generally consistent with the `true' Fs distributions when fine SR is exploited. With coarser SR, however, though R2 of the retrieved Fs may be high, large bias is likely to be obtained as well.

  15. [The research on separating and extracting overlapping spectral feature lines in LIBS using damped least squares method].

    PubMed

    Wang, Yin; Zhao, Nan-jing; Liu, Wen-qing; Yu, Yang; Fang, Li; Meng, De-shuo; Hu, Li; Zhang, Da-hai; Ma, Min-jun; Xiao, Xue; Wang, Yu; Liu, Jian-guo

    2015-02-01

    In recent years, the technology of laser induced breakdown spectroscopy has been developed rapidly. As one kind of new material composition detection technology, laser induced breakdown spectroscopy can simultaneously detect multi elements fast and simply without any complex sample preparation and realize field, in-situ material composition detection of the sample to be tested. This kind of technology is very promising in many fields. It is very important to separate, fit and extract spectral feature lines in laser induced breakdown spectroscopy, which is the cornerstone of spectral feature recognition and subsequent elements concentrations inversion research. In order to realize effective separation, fitting and extraction of spectral feature lines in laser induced breakdown spectroscopy, the original parameters for spectral lines fitting before iteration were analyzed and determined. The spectral feature line of' chromium (Cr I : 427.480 nm) in fly ash gathered from a coal-fired power station, which was overlapped with another line(FeI: 427.176 nm), was separated from the other one and extracted by using damped least squares method. Based on Gauss-Newton iteration, damped least squares method adds damping factor to step and adjust step length dynamically according to the feedback information after each iteration, in order to prevent the iteration from diverging and make sure that the iteration could converge fast. Damped least squares method helps to obtain better results of separating, fitting and extracting spectral feature lines and give more accurate intensity values of these spectral feature lines: The spectral feature lines of chromium in samples which contain different concentrations of chromium were separated and extracted. And then, the intensity values of corresponding spectral lines were given by using damped least squares method and least squares method separately. The calibration curves were plotted, which showed the relationship between spectral

  16. An adaptive-binning method for generating constant-uncertainty/constant-significance light curves with Fermi -LAT data

    DOE PAGES

    Lott, B.; Escande, L.; Larsson, S.; ...

    2012-07-19

    Here, we present a method enabling the creation of constant-uncertainty/constant-significance light curves with the data of the Fermi-Large Area Telescope (LAT). The adaptive-binning method enables more information to be encapsulated within the light curve than with the fixed-binning method. Although primarily developed for blazar studies, it can be applied to any sources. Furthermore, this method allows the starting and ending times of each interval to be calculated in a simple and quick way during a first step. The reported mean flux and spectral index (assuming the spectrum is a power-law distribution) in the interval are calculated via the standard LATmore » analysis during a second step. In the absence of major caveats associated with this method Monte-Carlo simulations have been established. We present the performance of this method in determining duty cycles as well as power-density spectra relative to the traditional fixed-binning method.« less

  17. Model of Semidiurnal Pseudo Tide in the High-Latitude Upper Mesosphere

    NASA Technical Reports Server (NTRS)

    Talaat, E. R.; Mayr, H. G.

    2011-01-01

    We present numerical results for the m = 1 meridional winds of semi diurnal oscillations in the high-latitude upper mesosphere, which are generated in the Numerical Spectral Model (NSM) without solar excitations of the tides. Identified with heuristic computer runs, the pseudo tides attain amplitudes that are, at times, as large as the non-migrating tides produced with standard solar forcing. Under the influence of parameterized gravity waves, the nonlinear NSM generates internal oscillations like the quasi-biennial oscillation, that are produced with periods favored by the dynamical properties of the system. The Coriolis force would favor at polar latitudes the excitation of the 12-hour periodicity. This oscillation may help explain the large non-migrating semidiurnal tides that are observed in the region with ground-based and satellite measurements.

  18. Joint spatial-spectral hyperspectral image clustering using block-diagonal amplified affinity matrix

    NASA Astrophysics Data System (ADS)

    Fan, Lei; Messinger, David W.

    2018-03-01

    The large number of spectral channels in a hyperspectral image (HSI) produces a fine spectral resolution to differentiate between materials in a scene. However, difficult classes that have similar spectral signatures are often confused while merely exploiting information in the spectral domain. Therefore, in addition to spectral characteristics, the spatial relationships inherent in HSIs should also be considered for incorporation into classifiers. The growing availability of high spectral and spatial resolution of remote sensors provides rich information for image clustering. Besides the discriminating power in the rich spectrum, contextual information can be extracted from the spatial domain, such as the size and the shape of the structure to which one pixel belongs. In recent years, spectral clustering has gained popularity compared to other clustering methods due to the difficulty of accurate statistical modeling of data in high dimensional space. The joint spatial-spectral information could be effectively incorporated into the proximity graph for spectral clustering approach, which provides a better data representation by discovering the inherent lower dimensionality from the input space. We embedded both spectral and spatial information into our proposed local density adaptive affinity matrix, which is able to handle multiscale data by automatically selecting the scale of analysis for every pixel according to its neighborhood of the correlated pixels. Furthermore, we explored the "conductivity method," which aims at amplifying the block diagonal structure of the affinity matrix to further improve the performance of spectral clustering on HSI datasets.

  19. Phase-sensitive spectral estimation by the hybrid filter diagonalization method.

    PubMed

    Celik, Hasan; Ridge, Clark D; Shaka, A J

    2012-01-01

    A more robust way to obtain a high-resolution multidimensional NMR spectrum from limited data sets is described. The Filter Diagonalization Method (FDM) is used to analyze phase-modulated data and cast the spectrum in terms of phase-sensitive Lorentzian "phase-twist" peaks. These spectra are then used to obtain absorption-mode phase-sensitive spectra. In contrast to earlier implementations of multidimensional FDM, the absolute phase of the data need not be known beforehand, and linear phase corrections in each frequency dimension are possible, if they are required. Regularization is employed to improve the conditioning of the linear algebra problems that must be solved to obtain the spectral estimate. While regularization smoothes away noise and small peaks, a hybrid method allows the true noise floor to be correctly represented in the final result. Line shape transformation to a Gaussian-like shape improves the clarity of the spectra, and is achieved by a conventional Lorentzian-to-Gaussian transformation in the time-domain, after inverse Fourier transformation of the FDM spectra. The results obtained highlight the danger of not using proper phase-sensitive line shapes in the spectral estimate. The advantages of the new method for the spectral estimate are the following: (i) the spectrum can be phased by conventional means after it is obtained; (ii) there is a true and accurate noise floor; and (iii) there is some indication of the quality of fit in each local region of the spectrum. The method is illustrated with 2D NMR data for the first time, but is applicable to n-dimensional data without any restriction on the number of time/frequency dimensions. Copyright © 2011. Published by Elsevier Inc.

  20. Task-oriented comparison of power spectral density estimation methods for quantifying acoustic attenuation in diagnostic ultrasound using a reference phantom method.

    PubMed

    Rosado-Mendez, Ivan M; Nam, Kibo; Hall, Timothy J; Zagzebski, James A

    2013-07-01

    Reported here is a phantom-based comparison of methods for determining the power spectral density (PSD) of ultrasound backscattered signals. Those power spectral density values are then used to estimate parameters describing α(f), the frequency dependence of the acoustic attenuation coefficient. Phantoms were scanned with a clinical system equipped with a research interface to obtain radiofrequency echo data. Attenuation, modeled as a power law α(f)= α0 f (β), was estimated using a reference phantom method. The power spectral density was estimated using the short-time Fourier transform (STFT), Welch's periodogram, and Thomson's multitaper technique, and performance was analyzed when limiting the size of the parameter-estimation region. Errors were quantified by the bias and standard deviation of the α0 and β estimates, and by the overall power-law fit error (FE). For parameter estimation regions larger than ~34 pulse lengths (~1 cm for this experiment), an overall power-law FE of 4% was achieved with all spectral estimation methods. With smaller parameter estimation regions as in parametric image formation, the bias and standard deviation of the α0 and β estimates depended on the size of the parameter estimation region. Here, the multitaper method reduced the standard deviation of the α0 and β estimates compared with those using the other techniques. The results provide guidance for choosing methods for estimating the power spectral density in quantitative ultrasound methods.

  1. New algorithms for field-theoretic block copolymer simulations: Progress on using adaptive-mesh refinement and sparse matrix solvers in SCFT calculations

    NASA Astrophysics Data System (ADS)

    Sides, Scott; Jamroz, Ben; Crockett, Robert; Pletzer, Alexander

    2012-02-01

    Self-consistent field theory (SCFT) for dense polymer melts has been highly successful in describing complex morphologies in block copolymers. Field-theoretic simulations such as these are able to access large length and time scales that are difficult or impossible for particle-based simulations such as molecular dynamics. The modified diffusion equations that arise as a consequence of the coarse-graining procedure in the SCF theory can be efficiently solved with a pseudo-spectral (PS) method that uses fast-Fourier transforms on uniform Cartesian grids. However, PS methods can be difficult to apply in many block copolymer SCFT simulations (eg. confinement, interface adsorption) in which small spatial regions might require finer resolution than most of the simulation grid. Progress on using new solver algorithms to address these problems will be presented. The Tech-X Chompst project aims at marrying the best of adaptive mesh refinement with linear matrix solver algorithms. The Tech-X code PolySwift++ is an SCFT simulation platform that leverages ongoing development in coupling Chombo, a package for solving PDEs via block-structured AMR calculations and embedded boundaries, with PETSc, a toolkit that includes a large assortment of sparse linear solvers.

  2. Method to analyze remotely sensed spectral data

    DOEpatents

    Stork, Christopher L [Albuquerque, NM; Van Benthem, Mark H [Middletown, DE

    2009-02-17

    A fast and rigorous multivariate curve resolution (MCR) algorithm is applied to remotely sensed spectral data. The algorithm is applicable in the solar-reflective spectral region, comprising the visible to the shortwave infrared (ranging from approximately 0.4 to 2.5 .mu.m), midwave infrared, and thermal emission spectral region, comprising the thermal infrared (ranging from approximately 8 to 15 .mu.m). For example, employing minimal a priori knowledge, notably non-negativity constraints on the extracted endmember profiles and a constant abundance constraint for the atmospheric upwelling component, MCR can be used to successfully compensate thermal infrared hyperspectral images for atmospheric upwelling and, thereby, transmittance effects. Further, MCR can accurately estimate the relative spectral absorption coefficients and thermal contrast distribution of a gas plume component near the minimum detectable quantity.

  3. SEDEBLEND: a new method for deblending spectral energy distributions in confused imaging

    NASA Astrophysics Data System (ADS)

    MacKenzie, Todd P.; Scott, Douglas; Swinbank, Mark

    2016-11-01

    For high-redshift submillimetre or millimetre sources detected with single-dish telescopes, interferometric follow-up has shown that many are multiple submillimetre galaxies blended together. Confusion-limited Herschel observations of such targets are also available, and these sample the peak of their spectral energy distribution (SED) in the far-infrared. Many methods for analysing these data have been adopted, but most follow the traditional approach of extracting fluxes before model SEDs are fit, which has the potential to erase important information on degeneracies among fitting parameters and glosses over the intricacies of confusion noise. Here, we adapt the forward-modelling method that we originally developed to disentangle a high-redshift strongly lensed galaxy group, in order to tackle this general problem in a more statistically rigorous way, by combining source deblending and SED fitting into the same procedure. We call this method `SEDeblend'. As an application, we derive constraints on far-infrared luminosities and dust temperatures for sources within the ALMA follow-up of the LABOCA Extended Chandra Deep Field South Submillimetre Survey. We find an average dust temperature for an 870-μm-selected sample of (33.9 ± 2.4) K for the full survey. When selection effects of the sample are considered, we find no evidence that the average dust temperature evolves with redshift for sources with redshifts greater than about 1.5, when compared to those with redshifts between 0.1 and 1.5.

  4. Spectral saliency via automatic adaptive amplitude spectrum analysis

    NASA Astrophysics Data System (ADS)

    Wang, Xiaodong; Dai, Jialun; Zhu, Yafei; Zheng, Haiyong; Qiao, Xiaoyan

    2016-03-01

    Suppressing nonsalient patterns by smoothing the amplitude spectrum at an appropriate scale has been shown to effectively detect the visual saliency in the frequency domain. Different filter scales are required for different types of salient objects. We observe that the optimal scale for smoothing amplitude spectrum shares a specific relation with the size of the salient region. Based on this observation and the bottom-up saliency detection characterized by spectrum scale-space analysis for natural images, we propose to detect visual saliency, especially with salient objects of different sizes and locations via automatic adaptive amplitude spectrum analysis. We not only provide a new criterion for automatic optimal scale selection but also reserve the saliency maps corresponding to different salient objects with meaningful saliency information by adaptive weighted combination. The performance of quantitative and qualitative comparisons is evaluated by three different kinds of metrics on the four most widely used datasets and one up-to-date large-scale dataset. The experimental results validate that our method outperforms the existing state-of-the-art saliency models for predicting human eye fixations in terms of accuracy and robustness.

  5. Use of EO-1 Hyperion data to calculate spectral band adjustment factors (SBAF) between the L7 ETM+ and Terra MODIS sensors

    USGS Publications Warehouse

    Chander, Gyanesh; Mishra, N.; Helder, Dennis L.; Aaron, David; Choi, T.; Angal, A.; Xiong, X.

    2010-01-01

    Different applications and technology developments in Earth observations necessarily require different spectral coverage. Thus, even for the spectral bands designed to look at the same region of the electromagnetic spectrum, the relative spectral responses (RSR) of different sensors may be different. In this study, spectral band adjustment factors (SBAF) are derived using hyperspectral Earth Observing-1 (EO-1) Hyperion measurements to adjust for the spectral band differences between the Landsat 7 (L7) Enhanced Thematic Mapper Plus (ETM+) and the Terra Moderate Resolution Imaging Spectroradiometer (MODIS) top-of-atmosphere (TOA) reflectance measurements from 2000 to 2009 over the pseudo-invariant Libya 4 reference standard test site.

  6. Tsallis entropy and decoherence of CsI quantum pseudo dot qubit

    NASA Astrophysics Data System (ADS)

    Tiotsop, M.; Fotue, A. J.; Fotsin, H. B.; Fai, L. C.

    2017-05-01

    Polaron in CsI quantum pseudo dot under an electromagnetic field was considered, and the ground and first excited state energies were derived by employing the combining Pekar variational and unitary transformation methods. With the two-level system obtained, single qubit was envisioned and the decoherence was studied using non-extensive entropy (Tsallis entropy). Numerical results showed: (i) the increase (decrease) of the energy levels (period of oscillation) with the increase of chemical potential, the zero point of pseudo dot, cyclotron frequency, and transverse and longitudinal confinements; (ii) the Tsallis entropy evolved as a wave envelop that increase with the increase of non-extenxive parameter and with the increase of electric field strength, zero point of pseudo dot and cyclotron frequency the wave envelop evolve periodically with reduction of period; (iii) The transition probability increases from the boundary to the centre of the dot where it has its maximum value. It was also noted that the probability density oscillate with period T0 = ℏ / Δ Ε with the tunnelling of the chemical potential and zero point of the pseudo dot. These results are helpful in the control of decoherence in quantum systems and may also be useful for the design of quantum computers.

  7. A novel artificial neural network method for biomedical prediction based on matrix pseudo-inversion.

    PubMed

    Cai, Binghuang; Jiang, Xia

    2014-04-01

    Biomedical prediction based on clinical and genome-wide data has become increasingly important in disease diagnosis and classification. To solve the prediction problem in an effective manner for the improvement of clinical care, we develop a novel Artificial Neural Network (ANN) method based on Matrix Pseudo-Inversion (MPI) for use in biomedical applications. The MPI-ANN is constructed as a three-layer (i.e., input, hidden, and output layers) feed-forward neural network, and the weights connecting the hidden and output layers are directly determined based on MPI without a lengthy learning iteration. The LASSO (Least Absolute Shrinkage and Selection Operator) method is also presented for comparative purposes. Single Nucleotide Polymorphism (SNP) simulated data and real breast cancer data are employed to validate the performance of the MPI-ANN method via 5-fold cross validation. Experimental results demonstrate the efficacy of the developed MPI-ANN for disease classification and prediction, in view of the significantly superior accuracy (i.e., the rate of correct predictions), as compared with LASSO. The results based on the real breast cancer data also show that the MPI-ANN has better performance than other machine learning methods (including support vector machine (SVM), logistic regression (LR), and an iterative ANN). In addition, experiments demonstrate that our MPI-ANN could be used for bio-marker selection as well. Copyright © 2013 Elsevier Inc. All rights reserved.

  8. A pilot study using low-dose Spectral CT and ASIR (Adaptive Statistical Iterative Reconstruction) algorithm to diagnose solitary pulmonary nodules.

    PubMed

    Xiao, Huijuan; Liu, Yihe; Tan, Hongna; Liang, Pan; Wang, Bo; Su, Lei; Wang, Suya; Gao, Jianbo

    2015-11-17

    Lung cancer is the most common cancer which has the highest mortality rate. With the development of computed tomography (CT) techniques, the case detection rates of solitary pulmonary nodules (SPN) has constantly increased and the diagnosis accuracy of SPN has remained a hot topic in clinical and imaging diagnosis. The aim of this study was to evaluate the combination of low-dose spectral CT and ASIR (Adaptive Statistical Iterative Reconstruction) algorithm in the diagnosis of solitary pulmonary nodules (SPN). 62 patients with SPN (42 cases of benign SPN and 20 cases of malignant SPN, pathology confirmed) were scanned by spectral CT with a dual-phase contrast-enhanced method. The iodine and water concentration (IC and WC) of the lesion and the artery in the image that had the same density were measured by the GSI (Gemstone Spectral Imaging) software. The normalized iodine and water concentration (NIC and NWC) of the lesion and the normalized iodine and water concentration difference (ICD and WCD) between the arterial and venous phases (AP and VP) were also calculated. The spectral HU (Hounsfield Unit ) curve was divided into 3 sections based on the energy (40-70, 70-100 and 100-140 keV) and the slopes (λHU) in both phases were calculated. The ICAP, ICVP, WCAP and WCVP, NIC and NWC, and the λHU in benign and malignant SPN were compared by independent sample t-test. The iodine related parameters (ICAP, ICVP, NICAP, NICVP, and the ICD) of malignant SPN were significantly higher than that of benign SPN (t = 3.310, 1.330, 2.388, 1.669 and 3.251, respectively, P <0.05). The 3 λHU values of venous phase in malignant SPN were higher than that of benign SPN (t = 3.803, 2.846 and 3.205, P <0.05). The difference of water related parameters (WCAP, WCVP, NWCAP, NWCVP and WCD) between malignant and benign SPN were not significant (t = 0.666, 0.257, 0.104, 0.550 and 0.585, P > 0.05). The iodine related parameters and the slope of spectral curve are useful markers to

  9. An advanced scanning method for space-borne hyper-spectral imaging system

    NASA Astrophysics Data System (ADS)

    Wang, Yue-ming; Lang, Jun-Wei; Wang, Jian-Yu; Jiang, Zi-Qing

    2011-08-01

    Space-borne hyper-spectral imagery is an important means for the studies and applications of earth science. High cost efficiency could be acquired by optimized system design. In this paper, an advanced scanning method is proposed, which contributes to implement both high temporal and spatial resolution imaging system. Revisit frequency and effective working time of space-borne hyper-spectral imagers could be greatly improved by adopting two-axis scanning system if spatial resolution and radiometric accuracy are not harshly demanded. In order to avoid the quality degradation caused by image rotation, an idea of two-axis rotation has been presented based on the analysis and simulation of two-dimensional scanning motion path and features. Further improvement of the imagers' detection ability under the conditions of small solar altitude angle and low surface reflectance can be realized by the Ground Motion Compensation on pitch axis. The structure and control performance are also described. An intelligent integration technology of two-dimensional scanning and image motion compensation is elaborated in this paper. With this technology, sun-synchronous hyper-spectral imagers are able to pay quick visit to hot spots, acquiring both high spatial and temporal resolution hyper-spectral images, which enables rapid response of emergencies. The result has reference value for developing operational space-borne hyper-spectral imagers.

  10. Possibility of successive SRXFA use along with chemical-spectral methods for palladium analysis in geological samples

    NASA Astrophysics Data System (ADS)

    Kislov, E. V.; Kulikov, A. A.; Kulikova, A. B.

    1989-10-01

    Samples of basit-ultrabasit rocks and NiCu ores of the Ioko-Dovyren and Chaya massifs were analysed by SRXFA and a chemical-spectral method. SRXFA perfectly satisfies the quantitative noble-metals analysis of ore-free rocks. Combination of SRXFA and chemical-spectral analysis has good prospects. After analysis of a great number of samples by SRXFA it is necessary to select samples which would show minimal and maximal results for the chemical-spectral method.

  11. Site Characterization in the Urban Area of Tijuana, B. C., Mexico by Means of: H/V Spectral Ratios, Spectral Analysis of Surface Waves, and Random Decrement Method

    NASA Astrophysics Data System (ADS)

    Tapia-Herrera, R.; Huerta-Lopez, C. I.; Martinez-Cruzado, J. A.

    2009-05-01

    Results of site characterization for an experimental site in the metropolitan area of Tijuana, B. C., Mexico are presented as part of the on-going research in which time series of earthquakes, ambient noise, and induced vibrations were processed with three different methods: H/V spectral ratios, Spectral Analysis of Surface Waves (SASW), and the Random Decrement Method, (RDM). Forward modeling using the wave propagation stiffness matrix method (Roësset and Kausel, 1981) was used to compute the theoretical SH/P, SV/P spectral ratios, and the experimental H/V spectral ratios were computed following the conventional concepts of Fourier analysis. The modeling/comparison between the theoretical and experimental H/V spectral ratios was carried out. For the SASW method the theoretical dispersion curves were also computed and compared with the experimental one, and finally the theoretical free vibration decay curve was compared with the experimental one obtained with the RDM. All three methods were tested with ambient noise, induced vibrations, and earthquake signals. Both experimental spectral ratios obtained with ambient noise as well as earthquake signals agree quite well with the theoretical spectral ratios, particularly at the fundamental vibration frequency of the recording site. Differences between the fundamental vibration frequencies are evident for sites located at alluvial fill (~0.6 Hz) and at sites located at conglomerate/sandstones fill (0.75 Hz). Shear wave velocities for the soft soil layers of the 4-layer discrete soil model ranges as low as 100 m/s and up to 280 m/s. The results with the SASW provided information that allows to identify low velocity layers, not seen before with the traditional seismic methods. The damping estimations obtained with the RDM are within the expected values, and the dominant frequency of the system also obtained with the RDM correlates within the range of plus-minus 20 % with the one obtained by means of the H/V spectral

  12. Adaptive filtering in biological signal processing.

    PubMed

    Iyer, V K; Ploysongsang, Y; Ramamoorthy, P A

    1990-01-01

    The high dependence of conventional optimal filtering methods on the a priori knowledge of the signal and noise statistics render them ineffective in dealing with signals whose statistics cannot be predetermined accurately. Adaptive filtering methods offer a better alternative, since the a priori knowledge of statistics is less critical, real time processing is possible, and the computations are less expensive for this approach. Adaptive filtering methods compute the filter coefficients "on-line", converging to the optimal values in the least-mean square (LMS) error sense. Adaptive filtering is therefore apt for dealing with the "unknown" statistics situation and has been applied extensively in areas like communication, speech, radar, sonar, seismology, and biological signal processing and analysis for channel equalization, interference and echo canceling, line enhancement, signal detection, system identification, spectral analysis, beamforming, modeling, control, etc. In this review article adaptive filtering in the context of biological signals is reviewed. An intuitive approach to the underlying theory of adaptive filters and its applicability are presented. Applications of the principles in biological signal processing are discussed in a manner that brings out the key ideas involved. Current and potential future directions in adaptive biological signal processing are also discussed.

  13. Track and vertex reconstruction: From classical to adaptive methods

    NASA Astrophysics Data System (ADS)

    Strandlie, Are; Frühwirth, Rudolf

    2010-04-01

    This paper reviews classical and adaptive methods of track and vertex reconstruction in particle physics experiments. Adaptive methods have been developed to meet the experimental challenges at high-energy colliders, in particular, the CERN Large Hadron Collider. They can be characterized by the obliteration of the traditional boundaries between pattern recognition and statistical estimation, by the competition between different hypotheses about what constitutes a track or a vertex, and by a high level of flexibility and robustness achieved with a minimum of assumptions about the data. The theoretical background of some of the adaptive methods is described, and it is shown that there is a close connection between the two main branches of adaptive methods: neural networks and deformable templates, on the one hand, and robust stochastic filters with annealing, on the other hand. As both classical and adaptive methods of track and vertex reconstruction presuppose precise knowledge of the positions of the sensitive detector elements, the paper includes an overview of detector alignment methods and a survey of the alignment strategies employed by past and current experiments.

  14. Robust chemical and chemical-resistant material detection using hyper-spectral imager and a new bend interpolation and local scaling HSI sharpening method

    NASA Astrophysics Data System (ADS)

    Chen, Hai-Wen; McGurr, Michael; Brickhouse, Mark

    2015-05-01

    We present new results from our ongoing research activity for chemical threat detection using hyper-spectral imager (HSI) detection techniques by detecting nontraditional threat spectral signatures of agent usage, such as protective equipment, coatings, paints, spills, and stains that are worn by human or on trucks or other objects. We have applied several current state-of-the-art HSI target detection methods such as Matched Filter (MF), Adaptive Coherence Estimator (ACE), Constrained Energy Minimization (CEM), and Spectral Angle Mapper (SAM). We are interested in detecting several chemical related materials: (a) Tyvek clothing is chemical resistance and Tyvek coveralls are one-piece garments for protecting human body from harmful chemicals, and (b) ammonium salts from background could be representative of spills from scrubbers or related to other chemical activities. The HSI dataset that we used for detection covers a chemical test field with more than 50 different kinds of chemicals, protective materials, coatings, and paints. Among them, there are four different kinds of Tyvek material, three types of ammonium salts, and one yellow jugs. The imagery cube data were collected by a HSI sensor with a spectral range of 400-2,500nm. Preliminary testing results are promising, and very high probability of detection (Pd) and low probability of false detection are achieved with the usage of full spectral range (400- 2,500nm). In the second part of this paper, we present our newly developed HSI sharpening technique. A new Band Interpolation and Local Scaling (BILS) method has been developed to improve HSI spatial resolution by 4-16 times with a low-cost high-resolution pen-chromatic camera and a RGB camera. Preliminary results indicate that this new technique is promising.

  15. Adaptive [theta]-methods for pricing American options

    NASA Astrophysics Data System (ADS)

    Khaliq, Abdul Q. M.; Voss, David A.; Kazmi, Kamran

    2008-12-01

    We develop adaptive [theta]-methods for solving the Black-Scholes PDE for American options. By adding a small, continuous term, the Black-Scholes PDE becomes an advection-diffusion-reaction equation on a fixed spatial domain. Standard implementation of [theta]-methods would require a Newton-type iterative procedure at each time step thereby increasing the computational complexity of the methods. Our linearly implicit approach avoids such complications. We establish a general framework under which [theta]-methods satisfy a discrete version of the positivity constraint characteristic of American options, and numerically demonstrate the sensitivity of the constraint. The positivity results are established for the single-asset and independent two-asset models. In addition, we have incorporated and analyzed an adaptive time-step control strategy to increase the computational efficiency. Numerical experiments are presented for one- and two-asset American options, using adaptive exponential splitting for two-asset problems. The approach is compared with an iterative solution of the two-asset problem in terms of computational efficiency.

  16. Pseudo-Outbreak of Actinomyces graevenitzii Associated with Bronchoscopy

    PubMed Central

    Peaper, David R.; Havill, Nancy L.; Aniskiewicz, Michael; Callan, Deborah; Pop, Olivia; Towle, Dana

    2014-01-01

    Outbreaks and pseudo-outbreaks of infection related to bronchoscopy typically involve Gram-negative bacteria, Mycobacterium species or Legionella species. We report an unusual bronchoscopy-related pseudo-outbreak due to Actinomyces graevenitzii. Extensive epidemiological and microbiological investigation failed to identify a common source. Strain typing revealed that the cluster was comprised of heterogeneous strains of A. graevenitzii. A change in laboratory procedures for Actinomyces cultures was coincident with the emergence of the pseudo-outbreak, and we determined that A. graevenitzii isolates more readily adopted a white, dry, molar tooth appearance on anaerobic colistin nalidixic acid (CNA) agar which likely facilitated its detection and identification in bronchoscopic specimens. This unusual pseudo-outbreak was related to frequent requests of bronchoscopists for Actinomyces cultures combined with a change in microbiology laboratory practices. PMID:25355767

  17. Testing Multivariate Adaptive Regression Splines (MARS) as a Method of Land Cover Classification of TERRA-ASTER Satellite Images.

    PubMed

    Quirós, Elia; Felicísimo, Angel M; Cuartero, Aurora

    2009-01-01

    This work proposes a new method to classify multi-spectral satellite images based on multivariate adaptive regression splines (MARS) and compares this classification system with the more common parallelepiped and maximum likelihood (ML) methods. We apply the classification methods to the land cover classification of a test zone located in southwestern Spain. The basis of the MARS method and its associated procedures are explained in detail, and the area under the ROC curve (AUC) is compared for the three methods. The results show that the MARS method provides better results than the parallelepiped method in all cases, and it provides better results than the maximum likelihood method in 13 cases out of 17. These results demonstrate that the MARS method can be used in isolation or in combination with other methods to improve the accuracy of soil cover classification. The improvement is statistically significant according to the Wilcoxon signed rank test.

  18. Inequalities for scalar curvature of pseudo-Riemannian submanifolds

    NASA Astrophysics Data System (ADS)

    Tripathi, Mukut Mani; Gülbahar, Mehmet; Kılıç, Erol; Keleş, Sadık

    2017-02-01

    Some basic inequalities, involving the scalar curvature and the mean curvature, for a pseudo-Riemannian submanifold of a pseudo-Riemannian manifold are obtained. We also find inequalities for spacelike submanifolds. Equality cases are also discussed.

  19. Spectral gamuts and spectral gamut mapping

    NASA Astrophysics Data System (ADS)

    Rosen, Mitchell R.; Derhak, Maxim W.

    2006-01-01

    All imaging devices have two gamuts: the stimulus gamut and the response gamut. The response gamut of a print engine is typically described in CIE colorimetry units, a system derived to quantify human color response. More fundamental than colorimetric gamuts are spectral gamuts, based on radiance, reflectance or transmittance units. Spectral gamuts depend on the physics of light or on how materials interact with light and do not involve the human's photoreceptor integration or brain processing. Methods for visualizing a spectral gamut raise challenges as do considerations of how to utilize such a data-set for producing superior color reproductions. Recent work has described a transformation of spectra reduced to 6-dimensions called LabPQR. LabPQR was designed as a hybrid space with three explicit colorimetric axes and three additional spectral reconstruction axes. In this paper spectral gamuts are discussed making use of LabPQR. Also, spectral gamut mapping is considered in light of the colorimetric-spectral duality of the LabPQR space.

  20. Pseudo-Fovea Formation After Gene Therapy for RPE65-LCA

    PubMed Central

    Cideciyan, Artur V.; Aguirre, Geoffrey K.; Jacobson, Samuel G.; Butt, Omar H.; Schwartz, Sharon B.; Swider, Malgorzata; Roman, Alejandro J.; Sadigh, Sam; Hauswirth, William W.

    2015-01-01

    Purpose. The purpose of this study was to evaluate fixation location and oculomotor characteristics of 15 patients with Leber congenital amaurosis (LCA) caused by RPE65 mutations (RPE65-LCA) who underwent retinal gene therapy. Methods. Eye movements were quantified under infrared imaging of the retina while the subject fixated on a stationary target. In a subset of patients, letter recognition under retinal imaging was performed. Cortical responses to visual stimulation were measured using functional magnetic resonance imaging (fMRI) in two patients before and after therapy. Results. All patients were able to fixate on a 1° diameter visible target in the dark. The preferred retinal locus of fixation was either at the anatomical fovea or at an extrafoveal locus. There were a wide range of oculomotor abnormalities. Natural history showed little change in oculomotor abnormalities if target illuminance was increased to maintain target visibility as the disease progressed. Eleven of 15 study eyes treated with gene therapy showed no differences from baseline fixation locations or instability over an average of follow-up of 3.5 years. Four of 15 eyes developed new pseudo-foveas in the treated retinal regions 9 to 12 months after therapy that persisted for up to 6 years; patients used their pseudo-foveas for letter identification. fMRI studies demonstrated that preservation of light sensitivity was restricted to the cortical projection zone of the pseudo-foveas. Conclusions. The slow emergence of pseudo-foveas many months after the initial increases in light sensitivity points to a substantial plasticity of the adult visual system and a complex interaction between it and the progression of underlying retinal disease. The visual significance of pseudo-foveas suggests careful consideration of treatment zones for future gene therapy trials. (ClinicalTrials.gov number, NCT00481546.) PMID:25537204

  1. Spectral characterization and calibration of AOTF spectrometers and hyper-spectral imaging system

    NASA Astrophysics Data System (ADS)

    Katrašnik, Jaka; Pernuš, Franjo; Likar, Boštjan

    2010-02-01

    The goal of this article is to present a novel method for spectral characterization and calibration of spectrometers and hyper-spectral imaging systems based on non-collinear acousto-optical tunable filters. The method characterizes the spectral tuning curve (frequency-wavelength characteristic) of the AOTF (Acousto-Optic Tunable Filter) filter by matching the acquired and modeled spectra of the HgAr calibration lamp, which emits line spectrum that can be well modeled via AOTF transfer function. In this way, not only tuning curve characterization and corresponding spectral calibration but also spectral resolution assessment is performed. The obtained results indicated that the proposed method is efficient, accurate and feasible for routine calibration of AOTF spectrometers and hyper-spectral imaging systems and thereby a highly competitive alternative to the existing calibration methods.

  2. Methods used in adaptation of health-related guidelines: A systematic survey.

    PubMed

    Abdul-Khalek, Rima A; Darzi, Andrea J; Godah, Mohammad W; Kilzar, Lama; Lakis, Chantal; Agarwal, Arnav; Abou-Jaoude, Elias; Meerpohl, Joerg J; Wiercioch, Wojtek; Santesso, Nancy; Brax, Hneine; Schünemann, Holger; Akl, Elie A

    2017-12-01

    Adaptation refers to the systematic approach for considering the endorsement or modification of recommendations produced in one setting for application in another as an alternative to de novo development. To describe and assess the methods used for adapting health-related guidelines published in peer-reviewed journals, and to assess the quality of the resulting adapted guidelines. We searched Medline and Embase up to June 2015. We assessed the method of adaptation, and the quality of included guidelines. Seventy-two papers were eligible. Most adapted guidelines and their source guidelines were published by professional societies (71% and 68% respectively), and in high-income countries (83% and 85% respectively). Of the 57 adapted guidelines that reported any detail about adaptation method, 34 (60%) did not use a published adaptation method. The number (and percentage) of adapted guidelines fulfilling each of the ADAPTE steps ranged between 2 (4%) and 57 (100%). The quality of adapted guidelines was highest for the "scope and purpose" domain and lowest for the "editorial independence" domain (respective mean percentages of the maximum possible scores were 93% and 43%). The mean score for "rigor of development" was 57%. Most adapted guidelines published in peer-reviewed journals do not report using a published adaptation method, and their adaptation quality was variable.

  3. Unsupervised Deep Hashing With Pseudo Labels for Scalable Image Retrieval.

    PubMed

    Zhang, Haofeng; Liu, Li; Long, Yang; Shao, Ling

    2018-04-01

    In order to achieve efficient similarity searching, hash functions are designed to encode images into low-dimensional binary codes with the constraint that similar features will have a short distance in the projected Hamming space. Recently, deep learning-based methods have become more popular, and outperform traditional non-deep methods. However, without label information, most state-of-the-art unsupervised deep hashing (DH) algorithms suffer from severe performance degradation for unsupervised scenarios. One of the main reasons is that the ad-hoc encoding process cannot properly capture the visual feature distribution. In this paper, we propose a novel unsupervised framework that has two main contributions: 1) we convert the unsupervised DH model into supervised by discovering pseudo labels; 2) the framework unifies likelihood maximization, mutual information maximization, and quantization error minimization so that the pseudo labels can maximumly preserve the distribution of visual features. Extensive experiments on three popular data sets demonstrate the advantages of the proposed method, which leads to significant performance improvement over the state-of-the-art unsupervised hashing algorithms.

  4. Spectral method for a kinetic swarming model

    DOE PAGES

    Gamba, Irene M.; Haack, Jeffrey R.; Motsch, Sebastien

    2015-04-28

    Here we present the first numerical method for a kinetic description of the Vicsek swarming model. The kinetic model poses a unique challenge, as there is a distribution dependent collision invariant to satisfy when computing the interaction term. We use a spectral representation linked with a discrete constrained optimization to compute these interactions. To test the numerical scheme we investigate the kinetic model at different scales and compare the solution with the microscopic and macroscopic descriptions of the Vicsek model. Lastly, we observe that the kinetic model captures key features such as vortex formation and traveling waves.

  5. Stable multi-domain spectral penalty methods for fractional partial differential equations

    NASA Astrophysics Data System (ADS)

    Xu, Qinwu; Hesthaven, Jan S.

    2014-01-01

    We propose stable multi-domain spectral penalty methods suitable for solving fractional partial differential equations with fractional derivatives of any order. First, a high order discretization is proposed to approximate fractional derivatives of any order on any given grids based on orthogonal polynomials. The approximation order is analyzed and verified through numerical examples. Based on the discrete fractional derivative, we introduce stable multi-domain spectral penalty methods for solving fractional advection and diffusion equations. The equations are discretized in each sub-domain separately and the global schemes are obtained by weakly imposed boundary and interface conditions through a penalty term. Stability of the schemes are analyzed and numerical examples based on both uniform and nonuniform grids are considered to highlight the flexibility and high accuracy of the proposed schemes.

  6. Pseudo-outbreak of Actinomyces graevenitzii associated with bronchoscopy.

    PubMed

    Peaper, David R; Havill, Nancy L; Aniskiewicz, Michael; Callan, Deborah; Pop, Olivia; Towle, Dana; Boyce, John M

    2015-01-01

    Outbreaks and pseudo-outbreaks of infection related to bronchoscopy typically involve Gram-negative bacteria, Mycobacterium species or Legionella species. We report an unusual bronchoscopy-related pseudo-outbreak due to Actinomyces graevenitzii. Extensive epidemiological and microbiological investigation failed to identify a common source. Strain typing revealed that the cluster was comprised of heterogeneous strains of A. graevenitzii. A change in laboratory procedures for Actinomyces cultures was coincident with the emergence of the pseudo-outbreak, and we determined that A. graevenitzii isolates more readily adopted a white, dry, molar tooth appearance on anaerobic colistin nalidixic acid (CNA) agar which likely facilitated its detection and identification in bronchoscopic specimens. This unusual pseudo-outbreak was related to frequent requests of bronchoscopists for Actinomyces cultures combined with a change in microbiology laboratory practices. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  7. Adaptive method with intercessory feedback control for an intelligent agent

    DOEpatents

    Goldsmith, Steven Y.

    2004-06-22

    An adaptive architecture method with feedback control for an intelligent agent provides for adaptively integrating reflexive and deliberative responses to a stimulus according to a goal. An adaptive architecture method with feedback control for multiple intelligent agents provides for coordinating and adaptively integrating reflexive and deliberative responses to a stimulus according to a goal. Re-programming of the adaptive architecture is through a nexus which coordinates reflexive and deliberator components.

  8. Experimental validation of a multi-energy x-ray adapted scatter separation method

    NASA Astrophysics Data System (ADS)

    Sossin, A.; Rebuffel, V.; Tabary, J.; Létang, J. M.; Freud, N.; Verger, L.

    2016-12-01

    Both in radiography and computed tomography (CT), recently emerged energy-resolved x-ray photon counting detectors enable the identification and quantification of individual materials comprising the inspected object. However, the approaches used for these operations require highly accurate x-ray images. The accuracy of the images is severely compromised by the presence of scattered radiation, which leads to a loss of spatial contrast and, more importantly, a bias in radiographic material imaging and artefacts in CT. The aim of the present study was to experimentally evaluate a recently introduced partial attenuation spectral scatter separation approach (PASSSA) adapted for multi-energy imaging. For this purpose, a prototype x-ray system was used. Several radiographic acquisitions of an anthropomorphic thorax phantom were performed. Reference primary images were obtained via the beam-stop (BS) approach. The attenuation images acquired from PASSSA-corrected data showed a substantial increase in local contrast and internal structure contour visibility when compared to uncorrected images. A substantial reduction of scatter induced bias was also achieved. Quantitatively, the developed method proved to be in relatively good agreement with the BS data. The application of the proposed scatter correction technique lowered the initial normalized root-mean-square error (NRMSE) of 45% between the uncorrected total and the reference primary spectral images by a factor of 9, thus reducing it to around 5%.

  9. Pseudo-myocardial infarction in diabetic ketoacidosis with hyperkalemia.

    PubMed

    Bellazzini, Marc A; Meyer, Tom

    2010-10-01

    Hyperkalemia-induced electrocardiogram changes such as dysrhythmias and altered T wave morphology are well described in the medical literature. Pseudo-infarction hyperkalemia-induced changes are less well known, but present a unique danger for the clinician treating these critically ill patients. This article describes a case of pseudo anteroseptal myocardial infarction in a type 1 diabetic with hyperkalemia. The most common patterns of pseudo-infarct and their associated potassium concentrations are then summarized from a literature review of 24 cases. Copyright © 2010 Elsevier Inc. All rights reserved.

  10. Pseudo-entanglement evaluated in noninertial frames

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Mehri-Dehnavi, Hossein, E-mail: mehri@alice.math.kindai.ac.jp; Research Center for Quantum Computing, Kinki University, 3-4-1 Kowakae, Higashi-Osaka, Osaka 577-8502; Mirza, Behrouz, E-mail: b.mirza@cc.iut.ac.ir

    2011-05-15

    Research Highlights: > We study pseudo-entanglement in noninertial frames. > We examine different measures of entanglement and nonclassical correlation for the state. > We find the threshold for entanglement is changed in noninertial frames. > We also describe the behavior of local unitary classes of states in noninertial frames. - Abstract: We study quantum discord, in addition to entanglement, of bipartite pseudo-entanglement in noninertial frames. It is shown that the entanglement degrades from its maximum value in a stationary frame to a minimum value in an infinite accelerating frame. There is a critical region found in which, for particular cases,more » entanglement of states vanishes for certain accelerations. The quantum discord of pseudo-entanglement decreases by increasing the acceleration. Also, for a physically inaccessible region, entanglement and nonclassical correlation are evaluated and shown to match the corresponding values of the physically accessible region for an infinite acceleration.« less

  11. Adaptive phase extraction: incorporating the Gabor transform in the matching pursuit algorithm.

    PubMed

    Wacker, Matthias; Witte, Herbert

    2011-10-01

    Short-time Fourier transform (STFT), Gabor transform (GT), wavelet transform (WT), and the Wigner-Ville distribution (WVD) are just some examples of time-frequency analysis methods which are frequently applied in biomedical signal analysis. However, all of these methods have their individual drawbacks. The STFT, GT, and WT have a time-frequency resolution that is determined by algorithm parameters and the WVD is contaminated by cross terms. In 1993, Mallat and Zhang introduced the matching pursuit (MP) algorithm that decomposes a signal into a sum of atoms and uses a cross-term free pseudo-WVD to generate a data-adaptive power distribution in the time-frequency space. Thus, it solved some of the problems of the GT and WT but lacks phase information that is crucial e.g., for synchronization analysis. We introduce a new time-frequency analysis method that combines the MP with a pseudo-GT. Therefore, the signal is decomposed into a set of Gabor atoms. Afterward, each atom is analyzed with a Gabor analysis, where the time-domain gaussian window of the analysis matches that of the specific atom envelope. A superposition of the single time-frequency planes gives the final result. This is the first time that a complete analysis of the complex time-frequency plane can be performed in a fully data-adaptive and frequency-selective manner. We demonstrate the capabilities of our approach on a simulation and on real-life magnetoencephalogram data.

  12. Pseudo-time algorithms for the Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Swanson, R. C.; Turkel, E.

    1986-01-01

    A pseudo-time method is introduced to integrate the compressible Navier-Stokes equations to a steady state. This method is a generalization of a method used by Crocco and also by Allen and Cheng. We show that for a simple heat equation that this is just a renormalization of the time. For a convection-diffusion equation the renormalization is dependent only on the viscous terms. We implement the method for the Navier-Stokes equations using a Runge-Kutta type algorithm. This permits the time step to be chosen based on the inviscid model only. We also discuss the use of residual smoothing when viscous terms are present.

  13. Tjalma syndrome (pseudo-pseudo Meigs') as initial manifestation of juvenile-onset systemic lupus erythematosus.

    PubMed

    Torres Jiménez, Alfonso Ragnar; Solís-Vallejo, Eunice; Céspedes-Cruz, Adriana Ivonne; Zeferino Cruz, Maritza; Rojas-Curiel, Edna Zoraida; Sánchez-Jara, Berenice

    2017-05-15

    Tjalma syndrome or pseudo-pseudo Meigs' syndrome is a clinical condition characterized by pleural effusion, ascites and elevated CA-125 with no associated benign or malignant ovarian tumor in a patient with systemic lupus erythematosus (SLE). Tjalma described the first case of a patient with SLE, pleural effusion, ascites and elevated CA-125. We report the first case in a 14-year old patient who presented with ascites and pleural effusion refractory to treatment and elevated CA-125, in the absence of an ovarian tumor, that warranted aggressive management. Copyright © 2017 Elsevier España, S.L.U. and Sociedad Española de Reumatología y Colegio Mexicano de Reumatología. All rights reserved.

  14. Zero-Echo-Time and Dixon Deep Pseudo-CT (ZeDD CT): Direct Generation of Pseudo-CT Images for Pelvic PET/MRI Attenuation Correction Using Deep Convolutional Neural Networks with Multiparametric MRI.

    PubMed

    Leynes, Andrew P; Yang, Jaewon; Wiesinger, Florian; Kaushik, Sandeep S; Shanbhag, Dattesh D; Seo, Youngho; Hope, Thomas A; Larson, Peder E Z

    2018-05-01

    Accurate quantification of uptake on PET images depends on accurate attenuation correction in reconstruction. Current MR-based attenuation correction methods for body PET use a fat and water map derived from a 2-echo Dixon MRI sequence in which bone is neglected. Ultrashort-echo-time or zero-echo-time (ZTE) pulse sequences can capture bone information. We propose the use of patient-specific multiparametric MRI consisting of Dixon MRI and proton-density-weighted ZTE MRI to directly synthesize pseudo-CT images with a deep learning model: we call this method ZTE and Dixon deep pseudo-CT (ZeDD CT). Methods: Twenty-six patients were scanned using an integrated 3-T time-of-flight PET/MRI system. Helical CT images of the patients were acquired separately. A deep convolutional neural network was trained to transform ZTE and Dixon MR images into pseudo-CT images. Ten patients were used for model training, and 16 patients were used for evaluation. Bone and soft-tissue lesions were identified, and the SUV max was measured. The root-mean-squared error (RMSE) was used to compare the MR-based attenuation correction with the ground-truth CT attenuation correction. Results: In total, 30 bone lesions and 60 soft-tissue lesions were evaluated. The RMSE in PET quantification was reduced by a factor of 4 for bone lesions (10.24% for Dixon PET and 2.68% for ZeDD PET) and by a factor of 1.5 for soft-tissue lesions (6.24% for Dixon PET and 4.07% for ZeDD PET). Conclusion: ZeDD CT produces natural-looking and quantitatively accurate pseudo-CT images and reduces error in pelvic PET/MRI attenuation correction compared with standard methods. © 2018 by the Society of Nuclear Medicine and Molecular Imaging.

  15. Sparsity based target detection for compressive spectral imagery

    NASA Astrophysics Data System (ADS)

    Boada, David Alberto; Arguello Fuentes, Henry

    2016-09-01

    Hyperspectral imagery provides significant information about the spectral characteristics of objects and materials present in a scene. It enables object and feature detection, classification, or identification based on the acquired spectral characteristics. However, it relies on sophisticated acquisition and data processing systems able to acquire, process, store, and transmit hundreds or thousands of image bands from a given area of interest which demands enormous computational resources in terms of storage, computationm, and I/O throughputs. Specialized optical architectures have been developed for the compressed acquisition of spectral images using a reduced set of coded measurements contrary to traditional architectures that need a complete set of measurements of the data cube for image acquisition, dealing with the storage and acquisition limitations. Despite this improvement, if any processing is desired, the image has to be reconstructed by an inverse algorithm in order to be processed, which is also an expensive task. In this paper, a sparsity-based algorithm for target detection in compressed spectral images is presented. Specifically, the target detection model adapts a sparsity-based target detector to work in a compressive domain, modifying the sparse representation basis in the compressive sensing problem by means of over-complete training dictionaries and a wavelet basis representation. Simulations show that the presented method can achieve even better detection results than the state of the art methods.

  16. MRI-based treatment planning with pseudo CT generated through atlas registration

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Uh, Jinsoo, E-mail: jinsoo.uh@stjude.org; Merchant, Thomas E.; Hua, Chiaho

    2014-05-15

    Purpose: To evaluate the feasibility and accuracy of magnetic resonance imaging (MRI)-based treatment planning using pseudo CTs generated through atlas registration. Methods: A pseudo CT, providing electron density information for dose calculation, was generated by deforming atlas CT images previously acquired on other patients. The authors tested 4 schemes of synthesizing a pseudo CT from single or multiple deformed atlas images: use of a single arbitrarily selected atlas, arithmetic mean process using 6 atlases, and pattern recognition with Gaussian process (PRGP) using 6 or 12 atlases. The required deformation for atlas CT images was derived from a nonlinear registration ofmore » conjugated atlas MR images to that of the patient of interest. The contrasts of atlas MR images were adjusted by histogram matching to reduce the effect of different sets of acquisition parameters. For comparison, the authors also tested a simple scheme assigning the Hounsfield unit of water to the entire patient volume. All pseudo CT generating schemes were applied to 14 patients with common pediatric brain tumors. The image similarity of real patient-specific CT and pseudo CTs constructed by different schemes was compared. Differences in computation times were also calculated. The real CT in the treatment planning system was replaced with the pseudo CT, and the dose distribution was recalculated to determine the difference. Results: The atlas approach generally performed better than assigning a bulk CT number to the entire patient volume. Comparing atlas-based schemes, those using multiple atlases outperformed the single atlas scheme. For multiple atlas schemes, the pseudo CTs were similar to the real CTs (correlation coefficient, 0.787–0.819). The calculated dose distribution was in close agreement with the original dose. Nearly the entire patient volume (98.3%–98.7%) satisfied the criteria of chi-evaluation (<2% maximum dose and 2 mm range). The dose to 95% of the volume and

  17. MRI-based treatment planning with pseudo CT generated through atlas registration

    PubMed Central

    Uh, Jinsoo; Merchant, Thomas E.; Li, Yimei; Li, Xingyu; Hua, Chiaho

    2014-01-01

    Purpose: To evaluate the feasibility and accuracy of magnetic resonance imaging (MRI)-based treatment planning using pseudo CTs generated through atlas registration. Methods: A pseudo CT, providing electron density information for dose calculation, was generated by deforming atlas CT images previously acquired on other patients. The authors tested 4 schemes of synthesizing a pseudo CT from single or multiple deformed atlas images: use of a single arbitrarily selected atlas, arithmetic mean process using 6 atlases, and pattern recognition with Gaussian process (PRGP) using 6 or 12 atlases. The required deformation for atlas CT images was derived from a nonlinear registration of conjugated atlas MR images to that of the patient of interest. The contrasts of atlas MR images were adjusted by histogram matching to reduce the effect of different sets of acquisition parameters. For comparison, the authors also tested a simple scheme assigning the Hounsfield unit of water to the entire patient volume. All pseudo CT generating schemes were applied to 14 patients with common pediatric brain tumors. The image similarity of real patient-specific CT and pseudo CTs constructed by different schemes was compared. Differences in computation times were also calculated. The real CT in the treatment planning system was replaced with the pseudo CT, and the dose distribution was recalculated to determine the difference. Results: The atlas approach generally performed better than assigning a bulk CT number to the entire patient volume. Comparing atlas-based schemes, those using multiple atlases outperformed the single atlas scheme. For multiple atlas schemes, the pseudo CTs were similar to the real CTs (correlation coefficient, 0.787–0.819). The calculated dose distribution was in close agreement with the original dose. Nearly the entire patient volume (98.3%–98.7%) satisfied the criteria of chi-evaluation (<2% maximum dose and 2 mm range). The dose to 95% of the volume and the

  18. A spectral multi-domain technique applied to high-speed chemically reacting flows

    NASA Technical Reports Server (NTRS)

    Macaraeg, Michele G.; Streett, Craig L.; Hussaini, M. Yousuff

    1989-01-01

    The first applications of a spectral multidomain method for viscous compressible flow is presented. The method imposes a global flux balance condition at the interface so that high-order continuity of the solution is preserved. The global flux balance is imposed in terms of a spectral integral of the discrete equations across adjoining domains. Since the discretized equations interior to each domain solved are uncoupled from each other, and since the interface relation has a block structure, the solution scheme can be adapted to the particular requirements of each subdomain. The spectral multidomain technique presented is well-suited for the multiple scales associated with the chemically reacting and transition flows in hypersonic research. A nonstaggered multidomain discretization is used for the chemically reacting flow calculation, and the first implementation of a staggered multidomain mesh is presented for accurately solving the stability equation for a viscous compressible fluid.

  19. Downscaling of snow depth and river discharge in Japan by the Pseudo-Global-Warming Method

    NASA Astrophysics Data System (ADS)

    Kimura, F.; Ma, X.; Hara, M.; Advanced Atmosphere-Ocean-Land Modeling Program

    2010-12-01

    Although a heavy snowfall often brings disaster, snow cover is one of the major water resources in Japan. Even during the winter, the monthly mean of the surface air temperature often exceeds 0 deg. in large parts of the heavy snow areas along the Sea of Japan. Thus, snow cover may be seriously reduced in these areas as a result of global warming, which is caused by an increase in greenhouse gases. This study estimates the impact of global warming on the snow depth in Japan during early winter. Some dynamical downscaling experiments are conducted by the Pseudo-Global-Warming method for the future projection of snow cover. By the hindcast runs, precipitation, snow depth, and surface air temperature show good agreement with the AMeDAS station data observed in a High-Snow-Cover (HSC) year and a Low-Snow-Cover (LSC) yea. Pseudo-Global-Warming runs for these years indicate that the decreasing ratios of the snow water are more significant in the areas whose altitude is less than 1500 m. The increase of the air temperature is one of the major factors for the decrease in snow water, since the present mean air temperature in most of these areas is near 0 deg. even in winter. On the other hand, the change in the aerial-mean precipitation due to global warming is less than 15% in both years. To evaluate the impact of the reduction of snow cover to water resource, a hydrological simulation is also made for the Agano River basin, which locates in Niigata and Fukushima Prefectures. The Agano River drains into the Sea of Japan and is the second largest river in Japan with annual discharge of about 12.9 billion m3. A hind cast experiment is carried out for the two decades from 1980 to 1999. The average correlation coefficient of 0.79 for the monthly mean discharge in the winter season indicates that the interannual variation of the river discharge could be reproduced and that the method is useful for climate change study. Then the hydrological response to the future global warming

  20. Adaptive hyperspectral imager: design, modeling, and control

    NASA Astrophysics Data System (ADS)

    McGregor, Scot; Lacroix, Simon; Monmayrant, Antoine

    2015-08-01

    An adaptive, hyperspectral imager is presented. We propose a system with easily adaptable spectral resolution, adjustable acquisition time, and high spatial resolution which is independent of spectral resolution. The system yields the possibility to define a variety of acquisition schemes, and in particular near snapshot acquisitions that may be used to measure the spectral content of given or automatically detected regions of interest. The proposed system is modelled and simulated, and tests on a first prototype validate the approach to achieve near snapshot spectral acquisitions without resorting to any computationally heavy post-processing, nor cumbersome calibration

  1. Ephemeral regions versus pseudo ephemeral regions

    NASA Technical Reports Server (NTRS)

    Martin, S. F.; Livi, S. H. B.; Wang, J.; Shi, Z.

    1985-01-01

    New studies of the quiet Sun reveal that ephemeral active regions constitute minority rather than a majority of all the short lived, small scale bipolar features on the Sun. In contrast to the recognized patterns of growth and decay of ephemeral regions, various examples of the creation of other temporary bipoles nicknamed pseudo ephemeral regions are illustrated. The pseudo ephemeral regions are the consequence of combinations of small scale dynamic processes of the quiet Sun including: (1) fragmentation of network magnetic fields, (2) the separation of opposite polarity halves of ephemeral regions as they grow and evolve, and (3) the coalescence of weak network or intranetwork magnetic fields. New observations offer the possibility of resolving the discrepancies that have arisen in the association of ephemeral regions with X-ray bright points. Many X-ray bright points may be related to those pseudo ephemeral regions which have begun to exhibit magnetic flux loss.

  2. Adaptive envelope protection methods for aircraft

    NASA Astrophysics Data System (ADS)

    Unnikrishnan, Suraj

    Carefree handling refers to the ability of a pilot to operate an aircraft without the need to continuously monitor aircraft operating limits. At the heart of all carefree handling or maneuvering systems, also referred to as envelope protection systems, are algorithms and methods for predicting future limit violations. Recently, envelope protection methods that have gained more acceptance, translate limit proximity information to its equivalent in the control channel. Envelope protection algorithms either use very small prediction horizon or are static methods with no capability to adapt to changes in system configurations. Adaptive approaches maximizing prediction horizon such as dynamic trim, are only applicable to steady-state-response critical limit parameters. In this thesis, a new adaptive envelope protection method is developed that is applicable to steady-state and transient response critical limit parameters. The approach is based upon devising the most aggressive optimal control profile to the limit boundary and using it to compute control limits. Pilot-in-the-loop evaluations of the proposed approach are conducted at the Georgia Tech Carefree Maneuver lab for transient longitudinal hub moment limit protection. Carefree maneuvering is the dual of carefree handling in the realm of autonomous Uninhabited Aerial Vehicles (UAVs). Designing a flight control system to fully and effectively utilize the operational flight envelope is very difficult. With the increasing role and demands for extreme maneuverability there is a need for developing envelope protection methods for autonomous UAVs. In this thesis, a full-authority automatic envelope protection method is proposed for limit protection in UAVs. The approach uses adaptive estimate of limit parameter dynamics and finite-time horizon predictions to detect impending limit boundary violations. Limit violations are prevented by treating the limit boundary as an obstacle and by correcting nominal control

  3. Spectral feature characterization methods for blood stain detection in crime scene backgrounds

    NASA Astrophysics Data System (ADS)

    Yang, Jie; Mathew, Jobin J.; Dube, Roger R.; Messinger, David W.

    2016-05-01

    Blood stains are one of the most important types of evidence for forensic investigation. They contain valuable DNA information, and the pattern of the stains can suggest specifics about the nature of the violence that transpired at the scene. Blood spectral signatures containing unique reflectance or absorption features are important both for forensic on-site investigation and laboratory testing. They can be used for target detection and identification applied to crime scene hyperspectral imagery, and also be utilized to analyze the spectral variation of blood on various backgrounds. Non-blood stains often mislead the detection and can generate false alarms at a real crime scene, especially for dark and red backgrounds. This paper measured the reflectance of liquid blood and 9 kinds of non-blood samples in the range of 350 nm - 2500 nm in various crime scene backgrounds, such as pure samples contained in petri dish with various thicknesses, mixed samples with different colors and materials of fabrics, and mixed samples with wood, all of which are examined to provide sub-visual evidence for detecting and recognizing blood from non-blood samples in a realistic crime scene. The spectral difference between blood and non-blood samples are examined and spectral features such as "peaks" and "depths" of reflectance are selected. Two blood stain detection methods are proposed in this paper. The first method uses index to denote the ratio of "depth" minus "peak" over"depth" add"peak" within a wavelength range of the reflectance spectrum. The second method uses relative band depth of the selected wavelength ranges of the reflectance spectrum. Results show that the index method is able to discriminate blood from non-blood samples in most tested crime scene backgrounds, but is not able to detect it from black felt. Whereas the relative band depth method is able to discriminate blood from non-blood samples on all of the tested background material types and colors.

  4. The Spectral Element Method for Geophysical Flows

    NASA Astrophysics Data System (ADS)

    Taylor, Mark

    1998-11-01

    We will describe SEAM, a Spectral Element Atmospheric Model. SEAM solves the 3D primitive equations used in climate modeling and medium range forecasting. SEAM uses a spectral element discretization for the surface of the globe and finite differences in the vertical direction. The model is spectrally accurate, as demonstrated by a variety of test cases. It is well suited for modern distributed-shared memory computers, sustaining over 24 GFLOPS on a 240 processor HP Exemplar. This performance has allowed us to run several interesting simulations in full spherical geometry at high resolution (over 22 million grid points).

  5. Adaptive Set-Based Methods for Association Testing.

    PubMed

    Su, Yu-Chen; Gauderman, William James; Berhane, Kiros; Lewinger, Juan Pablo

    2016-02-01

    With a typical sample size of a few thousand subjects, a single genome-wide association study (GWAS) using traditional one single nucleotide polymorphism (SNP)-at-a-time methods can only detect genetic variants conferring a sizable effect on disease risk. Set-based methods, which analyze sets of SNPs jointly, can detect variants with smaller effects acting within a gene, a pathway, or other biologically relevant sets. Although self-contained set-based methods (those that test sets of variants without regard to variants not in the set) are generally more powerful than competitive set-based approaches (those that rely on comparison of variants in the set of interest with variants not in the set), there is no consensus as to which self-contained methods are best. In particular, several self-contained set tests have been proposed to directly or indirectly "adapt" to the a priori unknown proportion and distribution of effects of the truly associated SNPs in the set, which is a major determinant of their power. A popular adaptive set-based test is the adaptive rank truncated product (ARTP), which seeks the set of SNPs that yields the best-combined evidence of association. We compared the standard ARTP, several ARTP variations we introduced, and other adaptive methods in a comprehensive simulation study to evaluate their performance. We used permutations to assess significance for all the methods and thus provide a level playing field for comparison. We found the standard ARTP test to have the highest power across our simulations followed closely by the global model of random effects (GMRE) and a least absolute shrinkage and selection operator (LASSO)-based test. © 2015 WILEY PERIODICALS, INC.

  6. Towards spectral geometric methods for Euclidean quantum gravity

    NASA Astrophysics Data System (ADS)

    Panine, Mikhail; Kempf, Achim

    2016-04-01

    The unification of general relativity with quantum theory will also require a coming together of the two quite different mathematical languages of general relativity and quantum theory, i.e., of differential geometry and functional analysis, respectively. Of particular interest in this regard is the field of spectral geometry, which studies to which extent the shape of a Riemannian manifold is describable in terms of the spectra of differential operators defined on the manifold. Spectral geometry is hard because it is highly nonlinear, but linearized spectral geometry, i.e., the task to determine small shape changes from small spectral changes, is much more tractable and may be iterated to approximate the full problem. Here, we generalize this approach, allowing, in particular, nonequal finite numbers of shape and spectral degrees of freedom. This allows us to study how well the shape degrees of freedom are encoded in the eigenvalues. We apply this strategy numerically to a class of planar domains and find that the reconstruction of small shape changes from small spectral changes is possible if enough eigenvalues are used. While isospectral nonisometric shapes are known to exist, we find evidence that generically shaped isospectral nonisometric shapes, if existing, are exceedingly rare.

  7. Improving reflectance reconstruction from tristimulus values by adaptively combining colorimetric and reflectance similarities

    NASA Astrophysics Data System (ADS)

    Cao, Bin; Liao, Ningfang; Li, Yasheng; Cheng, Haobo

    2017-05-01

    The use of spectral reflectance as fundamental color information finds application in diverse fields related to imaging. Many approaches use training sets to train the algorithm used for color classification. In this context, we note that the modification of training sets obviously impacts the accuracy of reflectance reconstruction based on classical reflectance reconstruction methods. Different modifying criteria are not always consistent with each other, since they have different emphases; spectral reflectance similarity focuses on the deviation of reconstructed reflectance, whereas colorimetric similarity emphasizes human perception. We present a method to improve the accuracy of the reconstructed spectral reflectance by adaptively combining colorimetric and spectral reflectance similarities. The different exponential factors of the weighting coefficients were investigated. The spectral reflectance reconstructed by the proposed method exhibits considerable improvements in terms of the root-mean-square error and goodness-of-fit coefficient of the spectral reflectance errors as well as color differences under different illuminants. Our method is applicable to diverse areas such as textiles, printing, art, and other industries.

  8. Syngeneic AAV pseudo-vectors potentiates full vector transduction

    USDA-ARS?s Scientific Manuscript database

    An excessive amount of empty capsids are generated during regular AAV vector production process. These pseudo-vectors often remain in final vectors used for animal studies or clinical trials. The potential effects of these pseudo-vectors on AAV transduction have been a major concern. In the current ...

  9. A spectral boundary integral equation method for the 2-D Helmholtz equation

    NASA Technical Reports Server (NTRS)

    Hu, Fang Q.

    1994-01-01

    In this paper, we present a new numerical formulation of solving the boundary integral equations reformulated from the Helmholtz equation. The boundaries of the problems are assumed to be smooth closed contours. The solution on the boundary is treated as a periodic function, which is in turn approximated by a truncated Fourier series. A Fourier collocation method is followed in which the boundary integral equation is transformed into a system of algebraic equations. It is shown that in order to achieve spectral accuracy for the numerical formulation, the nonsmoothness of the integral kernels, associated with the Helmholtz equation, must be carefully removed. The emphasis of the paper is on investigating the essential elements of removing the nonsmoothness of the integral kernels in the spectral implementation. The present method is robust for a general boundary contour. Aspects of efficient implementation of the method using FFT are also discussed. A numerical example of wave scattering is given in which the exponential accuracy of the present numerical method is demonstrated.

  10. A statistical evaluation of spectral fingerprinting methods using analysis of variance and principal component analysis

    USDA-ARS?s Scientific Manuscript database

    Six methods were compared with respect to spectral fingerprinting of a well-characterized series of broccoli samples. Spectral fingerprints were acquired for finely-powdered solid samples using Fourier transform-infrared (IR) and Fourier transform-near infrared (NIR) spectrometry and for aqueous met...

  11. [Extracting black soil border in Heilongjiang province based on spectral angle match method].

    PubMed

    Zhang, Xin-Le; Zhang, Shu-Wen; Li, Ying; Liu, Huan-Jun

    2009-04-01

    As soils are generally covered by vegetation most time of a year, the spectral reflectance collected by remote sensing technique is from the mixture of soil and vegetation, so the classification precision based on remote sensing (RS) technique is unsatisfied. Under RS and geographic information systems (GIS) environment and with the help of buffer and overlay analysis methods, land use and soil maps were used to derive regions of interest (ROI) for RS supervised classification, which plus MODIS reflectance products were chosen to extract black soil border, with methods including spectral single match. The results showed that the black soil border in Heilongjiang province can be extracted with soil remote sensing method based on MODIS reflectance products, especially in the north part of black soil zone; the classification precision of spectral angel mapping method is the highest, but the classifying accuracy of other soils can not meet the need, because of vegetation covering and similar spectral characteristics; even for the same soil, black soil, the classifying accuracy has obvious spatial heterogeneity, in the north part of black soil zone in Heilongjiang province it is higher than in the south, which is because of spectral differences; as soil uncovering period in Northeastern China is relatively longer, high temporal resolution make MODIS images get the advantage over soil remote sensing classification; with the help of GIS, extracting ROIs by making the best of auxiliary data can improve the precision of soil classification; with the help of auxiliary information, such as topography and climate, the classification accuracy was enhanced significantly. As there are five main factors determining soil classes, much data of different types, such as DEM, terrain factors, climate (temperature, precipitation, etc.), parent material, vegetation map, and remote sensing images, were introduced to classify soils, so how to choose some of the data and quantify the

  12. Spectral analysis methods for vehicle interior vibro-acoustics identification

    NASA Astrophysics Data System (ADS)

    Hosseini Fouladi, Mohammad; Nor, Mohd. Jailani Mohd.; Ariffin, Ahmad Kamal

    2009-02-01

    Noise has various effects on comfort, performance and health of human. Sound are analysed by human brain based on the frequencies and amplitudes. In a dynamic system, transmission of sound and vibrations depend on frequency and direction of the input motion and characteristics of the output. It is imperative that automotive manufacturers invest a lot of effort and money to improve and enhance the vibro-acoustics performance of their products. The enhancement effort may be very difficult and time-consuming if one relies only on 'trial and error' method without prior knowledge about the sources itself. Complex noise inside a vehicle cabin originated from various sources and travel through many pathways. First stage of sound quality refinement is to find the source. It is vital for automotive engineers to identify the dominant noise sources such as engine noise, exhaust noise and noise due to vibration transmission inside of vehicle. The purpose of this paper is to find the vibro-acoustical sources of noise in a passenger vehicle compartment. The implementation of spectral analysis method is much faster than the 'trial and error' methods in which, parts should be separated to measure the transfer functions. Also by using spectral analysis method, signals can be recorded in real operational conditions which conduce to more consistent results. A multi-channel analyser is utilised to measure and record the vibro-acoustical signals. Computational algorithms are also employed to identify contribution of various sources towards the measured interior signal. These achievements can be utilised to detect, control and optimise interior noise performance of road transport vehicles.

  13. Reduction of Metal Artifact in Single Photon-Counting Computed Tomography by Spectral-Driven Iterative Reconstruction Technique

    PubMed Central

    Nasirudin, Radin A.; Mei, Kai; Panchev, Petar; Fehringer, Andreas; Pfeiffer, Franz; Rummeny, Ernst J.; Fiebich, Martin; Noël, Peter B.

    2015-01-01

    Purpose The exciting prospect of Spectral CT (SCT) using photon-counting detectors (PCD) will lead to new techniques in computed tomography (CT) that take advantage of the additional spectral information provided. We introduce a method to reduce metal artifact in X-ray tomography by incorporating knowledge obtained from SCT into a statistical iterative reconstruction scheme. We call our method Spectral-driven Iterative Reconstruction (SPIR). Method The proposed algorithm consists of two main components: material decomposition and penalized maximum likelihood iterative reconstruction. In this study, the spectral data acquisitions with an energy-resolving PCD were simulated using a Monte-Carlo simulator based on EGSnrc C++ class library. A jaw phantom with a dental implant made of gold was used as an object in this study. A total of three dental implant shapes were simulated separately to test the influence of prior knowledge on the overall performance of the algorithm. The generated projection data was first decomposed into three basis functions: photoelectric absorption, Compton scattering and attenuation of gold. A pseudo-monochromatic sinogram was calculated and used as input in the reconstruction, while the spatial information of the gold implant was used as a prior. The results from the algorithm were assessed and benchmarked with state-of-the-art reconstruction methods. Results Decomposition results illustrate that gold implant of any shape can be distinguished from other components of the phantom. Additionally, the result from the penalized maximum likelihood iterative reconstruction shows that artifacts are significantly reduced in SPIR reconstructed slices in comparison to other known techniques, while at the same time details around the implant are preserved. Quantitatively, the SPIR algorithm best reflects the true attenuation value in comparison to other algorithms. Conclusion It is demonstrated that the combination of the additional information from

  14. Applications of spectral methods to turbulent magnetofluids in space and fusion research

    NASA Technical Reports Server (NTRS)

    Montgomery, D.; Voigt, R. G. (Editor); Gottlieb, D. (Editor); Hussaini, M. Y. (Editor)

    1984-01-01

    Recent and potential applications of spectral method computation to incompressible, dissipative magnetohydrodynamics are surveyed. Linear stability problems for one dimensional, quasi-equilibria are approachable through a close analogue of the Orr-Sommerfeld equation. It is likely that for Reynolds-like numbers above certain as-yet-undetermined thresholds, all magnetofluids are turbulent. Four recent effects in MHD turbulence are remarked upon, as they have displayed themselves in spectral method computations: (1) inverse cascades; (2) small-scale intermittent dissipative structures; (3) selective decays of ideal global invariants relative to each other; and (4) anisotropy induced by a mean dc magnetic field. Two more conjectured applications are suggested. All the turbulent processes discussed are sometimes involved in current carrying confined fusion magnetoplasmas and in space plasmas.

  15. Application of the Spectral Element Method to Interior Noise Problems

    NASA Technical Reports Server (NTRS)

    Doyle, James F.

    1998-01-01

    The primary effort of this research project was focused the development of analytical methods for the accurate prediction of structural acoustic noise and response. Of particular interest was the development of curved frame and shell spectral elements for the efficient computational of structural response and of schemes to match this to the surrounding fluid.

  16. Spectral Element Method for the Simulation of Unsteady Compressible Flows

    NASA Technical Reports Server (NTRS)

    Diosady, Laslo Tibor; Murman, Scott M.

    2013-01-01

    This work uses a discontinuous-Galerkin spectral-element method (DGSEM) to solve the compressible Navier-Stokes equations [1{3]. The inviscid ux is computed using the approximate Riemann solver of Roe [4]. The viscous fluxes are computed using the second form of Bassi and Rebay (BR2) [5] in a manner consistent with the spectral-element approximation. The method of lines with the classical 4th-order explicit Runge-Kutta scheme is used for time integration. Results for polynomial orders up to p = 15 (16th order) are presented. The code is parallelized using the Message Passing Interface (MPI). The computations presented in this work are performed using the Sandy Bridge nodes of the NASA Pleiades supercomputer at NASA Ames Research Center. Each Sandy Bridge node consists of 2 eight-core Intel Xeon E5-2670 processors with a clock speed of 2.6Ghz and 2GB per core memory. On a Sandy Bridge node the Tau Benchmark [6] runs in a time of 7.6s.

  17. Paraguayan pharmacies and the sale of pseudo-abortifacients.

    PubMed

    Krayacich de Oddone, N; Shedlin, M G; Welsh, M; Potts, M; Feldblum, P

    1991-04-01

    This study was conducted in 1985 in Asunción, Paraguay, 6 years after the closure of the state supported family planning services. Data from national surveys in 1977 and 1987 permit a comparison of sources of contraceptive supplies before and after the elimination of government support for family planning. The purchase of pseudo-abortifacients from private pharmacies was used as an indication of induced abortion. After the loss of government clinics, it is suggested that some women turned to pharmacists to obtain pseudo-abortifacients when faced with unwanted pregnancy. There is an indication of increased pseudo-abortifacient use, particularly among unmarried women and those from poorer neighbourhoods.

  18. Validation of Spectral Unmixing Results from Informed Non-Negative Matrix Factorization (INMF) of Hyperspectral Imagery

    NASA Astrophysics Data System (ADS)

    Wright, L.; Coddington, O.; Pilewskie, P.

    2017-12-01

    Hyperspectral instruments are a growing class of Earth observing sensors designed to improve remote sensing capabilities beyond discrete multi-band sensors by providing tens to hundreds of continuous spectral channels. Improved spectral resolution, range and radiometric accuracy allow the collection of large amounts of spectral data, facilitating thorough characterization of both atmospheric and surface properties. We describe the development of an Informed Non-Negative Matrix Factorization (INMF) spectral unmixing method to exploit this spectral information and separate atmospheric and surface signals based on their physical sources. INMF offers marked benefits over other commonly employed techniques including non-negativity, which avoids physically impossible results; and adaptability, which tailors the method to hyperspectral source separation. The INMF algorithm is adapted to separate contributions from physically distinct sources using constraints on spectral and spatial variability, and library spectra to improve the initial guess. Using this INMF algorithm we decompose hyperspectral imagery from the NASA Hyperspectral Imager for the Coastal Ocean (HICO), with a focus on separating surface and atmospheric signal contributions. HICO's coastal ocean focus provides a dataset with a wide range of atmospheric and surface conditions. These include atmospheres with varying aerosol optical thicknesses and cloud cover. HICO images also provide a range of surface conditions including deep ocean regions, with only minor contributions from the ocean surfaces; and more complex shallow coastal regions with contributions from the seafloor or suspended sediments. We provide extensive comparison of INMF decomposition results against independent measurements of physical properties. These include comparison against traditional model-based retrievals of water-leaving, aerosol, and molecular scattering radiances and other satellite products, such as aerosol optical thickness from

  19. Method of photon spectral analysis

    DOEpatents

    Gehrke, Robert J.; Putnam, Marie H.; Killian, E. Wayne; Helmer, Richard G.; Kynaston, Ronnie L.; Goodwin, Scott G.; Johnson, Larry O.

    1993-01-01

    A spectroscopic method to rapidly measure the presence of plutonium in soils, filters, smears, and glass waste forms by measuring the uranium L-shell x-ray emissions associated with the decay of plutonium. In addition, the technique can simultaneously acquire spectra of samples and automatically analyze them for the amount of americium and .gamma.-ray emitting activation and fission products present. The samples are counted with a large area, thin-window, n-type germanium spectrometer which is equally efficient for the detection of low-energy x-rays (10-2000 keV), as well as high-energy .gamma. rays (>1 MeV). A 8192- or 16,384 channel analyzer is used to acquire the entire photon spectrum at one time. A dual-energy, time-tagged pulser, that is injected into the test input of the preamplifier to monitor the energy scale, and detector resolution. The L x-ray portion of each spectrum is analyzed by a linear-least-squares spectral fitting technique. The .gamma.-ray portion of each spectrum is analyzed by a standard Ge .gamma.-ray analysis program. This method can be applied to any analysis involving x- and .gamma.-ray analysis in one spectrum and is especially useful when interferences in the x-ray region can be identified from the .gamma.-ray analysis and accommodated during the x-ray analysis.

  20. Method of photon spectral analysis

    DOEpatents

    Gehrke, R.J.; Putnam, M.H.; Killian, E.W.; Helmer, R.G.; Kynaston, R.L.; Goodwin, S.G.; Johnson, L.O.

    1993-04-27

    A spectroscopic method to rapidly measure the presence of plutonium in soils, filters, smears, and glass waste forms by measuring the uranium L-shell x-ray emissions associated with the decay of plutonium. In addition, the technique can simultaneously acquire spectra of samples and automatically analyze them for the amount of americium and [gamma]-ray emitting activation and fission products present. The samples are counted with a large area, thin-window, n-type germanium spectrometer which is equally efficient for the detection of low-energy x-rays (10-2,000 keV), as well as high-energy [gamma] rays (>1 MeV). A 8,192- or 16,384 channel analyzer is used to acquire the entire photon spectrum at one time. A dual-energy, time-tagged pulser, that is injected into the test input of the preamplifier to monitor the energy scale, and detector resolution. The L x-ray portion of each spectrum is analyzed by a linear-least-squares spectral fitting technique. The [gamma]-ray portion of each spectrum is analyzed by a standard Ge [gamma]-ray analysis program. This method can be applied to any analysis involving x- and [gamma]-ray analysis in one spectrum and is especially useful when interferences in the x-ray region can be identified from the [gamma]-ray analysis and accommodated during the x-ray analysis.

  1. A fast numerical solution of scattering by a cylinder: Spectral method for the boundary integral equations

    NASA Technical Reports Server (NTRS)

    Hu, Fang Q.

    1994-01-01

    It is known that the exact analytic solutions of wave scattering by a circular cylinder, when they exist, are not in a closed form but in infinite series which converges slowly for high frequency waves. In this paper, we present a fast number solution for the scattering problem in which the boundary integral equations, reformulated from the Helmholtz equation, are solved using a Fourier spectral method. It is shown that the special geometry considered here allows the implementation of the spectral method to be simple and very efficient. The present method differs from previous approaches in that the singularities of the integral kernels are removed and dealt with accurately. The proposed method preserves the spectral accuracy and is shown to have an exponential rate of convergence. Aspects of efficient implementation using FFT are discussed. Moreover, the boundary integral equations of combined single and double-layer representation are used in the present paper. This ensures the uniqueness of the numerical solution for the scattering problem at all frequencies. Although a strongly singular kernel is encountered for the Neumann boundary conditions, we show that the hypersingularity can be handled easily in the spectral method. Numerical examples that demonstrate the validity of the method are also presented.

  2. Generalized Heisenberg algebra and (non linear) pseudo-bosons

    NASA Astrophysics Data System (ADS)

    Bagarello, F.; Curado, E. M. F.; Gazeau, J. P.

    2018-04-01

    We propose a deformed version of the generalized Heisenberg algebra by using techniques borrowed from the theory of pseudo-bosons. In particular, this analysis is relevant when non self-adjoint Hamiltonians are needed to describe a given physical system. We also discuss relations with nonlinear pseudo-bosons. Several examples are discussed.

  3. Conditional adaptive Bayesian spectral analysis of nonstationary biomedical time series.

    PubMed

    Bruce, Scott A; Hall, Martica H; Buysse, Daniel J; Krafty, Robert T

    2018-03-01

    Many studies of biomedical time series signals aim to measure the association between frequency-domain properties of time series and clinical and behavioral covariates. However, the time-varying dynamics of these associations are largely ignored due to a lack of methods that can assess the changing nature of the relationship through time. This article introduces a method for the simultaneous and automatic analysis of the association between the time-varying power spectrum and covariates, which we refer to as conditional adaptive Bayesian spectrum analysis (CABS). The procedure adaptively partitions the grid of time and covariate values into an unknown number of approximately stationary blocks and nonparametrically estimates local spectra within blocks through penalized splines. CABS is formulated in a fully Bayesian framework, in which the number and locations of partition points are random, and fit using reversible jump Markov chain Monte Carlo techniques. Estimation and inference averaged over the distribution of partitions allows for the accurate analysis of spectra with both smooth and abrupt changes. The proposed methodology is used to analyze the association between the time-varying spectrum of heart rate variability and self-reported sleep quality in a study of older adults serving as the primary caregiver for their ill spouse. © 2017, The International Biometric Society.

  4. A Comparison of Analytical and Data Preprocessing Methods for Spectral Fingerprinting

    PubMed Central

    LUTHRIA, DEVANAND L.; MUKHOPADHYAY, SUDARSAN; LIN, LONG-ZE; HARNLY, JAMES M.

    2013-01-01

    Spectral fingerprinting, as a method of discriminating between plant cultivars and growing treatments for a common set of broccoli samples, was compared for six analytical instruments. Spectra were acquired for finely powdered solid samples using Fourier transform infrared (FT-IR) and Fourier transform near-infrared (NIR) spectrometry. Spectra were also acquired for unfractionated aqueous methanol extracts of the powders using molecular absorption in the ultraviolet (UV) and visible (VIS) regions and mass spectrometry with negative (MS−) and positive (MS+) ionization. The spectra were analyzed using nested one-way analysis of variance (ANOVA) and principal component analysis (PCA) to statistically evaluate the quality of discrimination. All six methods showed statistically significant differences between the cultivars and treatments. The significance of the statistical tests was improved by the judicious selection of spectral regions (IR and NIR), masses (MS+ and MS−), and derivatives (IR, NIR, UV, and VIS). PMID:21352644

  5. [Spectral scatter correction of coal samples based on quasi-linear local weighted method].

    PubMed

    Lei, Meng; Li, Ming; Ma, Xiao-Ping; Miao, Yan-Zi; Wang, Jian-Sheng

    2014-07-01

    The present paper puts forth a new spectral correction method based on quasi-linear expression and local weighted function. The first stage of the method is to search 3 quasi-linear expressions to replace the original linear expression in MSC method, such as quadratic, cubic and growth curve expression. Then the local weighted function is constructed by introducing 4 kernel functions, such as Gaussian, Epanechnikov, Biweight and Triweight kernel function. After adding the function in the basic estimation equation, the dependency between the original and ideal spectra is described more accurately and meticulously at each wavelength point. Furthermore, two analytical models were established respectively based on PLS and PCA-BP neural network method, which can be used for estimating the accuracy of corrected spectra. At last, the optimal correction mode was determined by the analytical results with different combination of quasi-linear expression and local weighted function. The spectra of the same coal sample have different noise ratios while the coal sample was prepared under different particle sizes. To validate the effectiveness of this method, the experiment analyzed the correction results of 3 spectral data sets with the particle sizes of 0.2, 1 and 3 mm. The results show that the proposed method can eliminate the scattering influence, and also can enhance the information of spectral peaks. This paper proves a more efficient way to enhance the correlation between corrected spectra and coal qualities significantly, and improve the accuracy and stability of the analytical model substantially.

  6. A New View of Earthquake Ground Motion Data: The Hilbert Spectral Analysis

    NASA Technical Reports Server (NTRS)

    Huang, Norden; Busalacchi, Antonio J. (Technical Monitor)

    2000-01-01

    A brief description of the newly developed Empirical Mode Decomposition (ENID) and Hilbert Spectral Analysis (HSA) method will be given. The decomposition is adaptive and can be applied to both nonlinear and nonstationary data. Example of the method applied to a sample earthquake record will be given. The results indicate those low frequency components, totally missed by the Fourier analysis, are clearly identified by the new method. Comparisons with Wavelet and window Fourier analysis show the new method offers much better temporal and frequency resolutions.

  7. Three-Dimensional High-Order Spectral Finite Volume Method for Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Liu, Yen; Vinokur, Marcel; Wang, Z. J.; Kwak, Dochan (Technical Monitor)

    2002-01-01

    Many areas require a very high-order accurate numerical solution of conservation laws for complex shapes. This paper deals with the extension to three dimensions of the Spectral Finite Volume (SV) method for unstructured grids, which was developed to solve such problems. We first summarize the limitations of traditional methods such as finite-difference, and finite-volume for both structured and unstructured grids. We then describe the basic formulation of the spectral finite volume method. What distinguishes the SV method from conventional high-order finite-volume methods for unstructured triangular or tetrahedral grids is the data reconstruction. Instead of using a large stencil of neighboring cells to perform a high-order reconstruction, the stencil is constructed by partitioning each grid cell, called a spectral volume (SV), into 'structured' sub-cells, called control volumes (CVs). One can show that if all the SV cells are partitioned into polygonal or polyhedral CV sub-cells in a geometrically similar manner, the reconstructions for all the SVs become universal, irrespective of their shapes, sizes, orientations, or locations. It follows that the reconstruction is reduced to a weighted sum of unknowns involving just a few simple adds and multiplies, and those weights are universal and can be pre-determined once for all. The method is thus very efficient, accurate, and yet geometrically flexible. The most critical part of the SV method is the partitioning of the SV into CVs. In this paper we present the partitioning of a tetrahedral SV into polyhedral CVs with one free parameter for polynomial reconstructions up to degree of precision five. (Note that the order of accuracy of the method is one order higher than the reconstruction degree of precision.) The free parameter will be determined by minimizing the Lebesgue constant of the reconstruction matrix or similar criteria to obtain optimized partitions. The details of an efficient, parallelizable code to solve

  8. Near-infrared spectral methods for noninvasively measuring blood glucose

    NASA Astrophysics Data System (ADS)

    Fei, Sun; Kong, Deyi; Mei, Tao; Tao, Yongchun

    2004-05-01

    Determination of blood glucose concentrations in diabetic patients is a frequently occurring procedure and an important tool for diabetes management. Use of noninvasive detection techniques can relieve patients from the pain of frequent finger pokes and avoid the infection of disease via blood. This thesis discusses current research and analyzes the advantages and shortages of different measurement methods, including: optical methods (Transmission, Polarimetry and scattering), then, we give emphasis to analyze the technology of near-infrared (NIR) spectra. NIR spectral range 700 nm ~2300 nm was used because of its good transparency for biological tissue and presence of glucose absorption band. In this work, we present an outline of noninvasive blood glucose measurement. A near-infrared light beam is passed through the finger, and the spectral components of the emergent beam are measured using spectroscopic techniques. The device includes light sources having the wavelengths of 600 nm - 1800 nm to illuminate the tissue. Receptors associated with the light sources for receiving light and generating a transmission signal representing the light transmitted are also provided. Once a transmission signal is received by receptors, and the high and low values from each of the signals are stored in the device. The averaged values are then analyzed to determine the glucose concentration, which is displayed on the device.

  9. A novel pseudo resistor structure for biomedical front-end amplifiers.

    PubMed

    Yu-Chieh Huang; Tzu-Sen Yang; Shun-Hsi Hsu; Xin-Zhuang Chen; Jin-Chern Chiou

    2015-08-01

    This study proposes a novel pseudo resistor structure with a tunable DC bias voltage for biomedical front-end amplifiers (FEAs). In the proposed FEA, the high-pass filter composed of differential difference amplifier and a pseudo resistor is implemented. The FEA is manufactured by using a standard TSMC 0.35 μm CMOS process. In this study, three types FEAs included three different pseudo resistor are simulated, fabricated and measured for comparison and electrocorticography (ECoG) measurement, and all the results show the proposed pseudo resistor is superior to other two types in bandwidth. In chip implementation, the lower and upper cutoff frequencies of the high-pass filter with the proposed pseudo resistor are 0.15 Hz and 4.98 KHz, respectively. It also demonstrates lower total harmonic distortion performance of -58 dB at 1 kHz and higher stability with wide supply range (1.8 V and 3.3 V) and control voltage range (0.9 V and 1.65 V) than others. Moreover, the FEA with the proposed pseudo successfully recorded spike-and-wave discharges of ECoG signal in in vivo experiment on rat with pentylenetetrazol-induced seizures.

  10. On the boundary treatment in spectral methods for hyperbolic systems

    NASA Technical Reports Server (NTRS)

    Canuto, C.; Quarteroni, A.

    1986-01-01

    Spectral methods were successfully applied to the simulation of slow transients in gas transportation networks. Implicit time advancing techniques are naturally suggested by the nature of the problem. The correct treatment of the boundary conditions are clarified in order to avoid any stability restriction originated by the boundaries. The Beam and Warming and the Lerat schemes are unconditionally linearly stable when used with a Chebyshev pseudospectral method. Engineering accuracy for a gas transportation problem is achieved at Courant numbers up to 100.

  11. On the boundary treatment in spectral methods for hyperbolic systems

    NASA Technical Reports Server (NTRS)

    Canuto, Claudio; Quarteroni, Alfio

    1987-01-01

    Spectral methods were successfully applied to the simulation of slow transients in gas transportation networks. Implicit time advancing techniques are naturally suggested by the nature of the problem. The correct treatment of the boundary conditions is clarified in order to avoid any stability restriction originated by the boundaries. The Beam and Warming and the Lerat schemes are unconditionally linearly stable when used with a Chebyshev pseudospectral method. Engineering accuracy for a gas transportation problem is achieved at Courant numbers up to 100.

  12. Dissipation-preserving spectral element method for damped seismic wave equations

    NASA Astrophysics Data System (ADS)

    Cai, Wenjun; Zhang, Huai; Wang, Yushun

    2017-12-01

    This article describes the extension of the conformal symplectic method to solve the damped acoustic wave equation and the elastic wave equations in the framework of the spectral element method. The conformal symplectic method is a variation of conventional symplectic methods to treat non-conservative time evolution problems, which has superior behaviors in long-time stability and dissipation preservation. To reveal the intrinsic dissipative properties of the model equations, we first reformulate the original systems in their equivalent conformal multi-symplectic structures and derive the corresponding conformal symplectic conservation laws. We thereafter separate each system into a conservative Hamiltonian system and a purely dissipative ordinary differential equation system. Based on the splitting methodology, we solve the two subsystems respectively. The dissipative one is cheaply solved by its analytic solution. While for the conservative system, we combine a fourth-order symplectic Nyström method in time and the spectral element method in space to cover the circumstances in realistic geological structures involving complex free-surface topography. The Strang composition method is adopted thereby to concatenate the corresponding two parts of solutions and generate the completed conformal symplectic method. A relative larger Courant number than that of the traditional Newmark scheme is found in the numerical experiments in conjunction with a spatial sampling of approximately 5 points per wavelength. A benchmark test for the damped acoustic wave equation validates the effectiveness of our proposed method in precisely capturing dissipation rate. The classical Lamb problem is used to demonstrate the ability of modeling Rayleigh wave in elastic wave propagation. More comprehensive numerical experiments are presented to investigate the long-time simulation, low dispersion and energy conservation properties of the conformal symplectic methods in both the attenuating

  13. Multistage Spectral Relaxation Method for Solving the Hyperchaotic Complex Systems

    PubMed Central

    Saberi Nik, Hassan; Rebelo, Paulo

    2014-01-01

    We present a pseudospectral method application for solving the hyperchaotic complex systems. The proposed method, called the multistage spectral relaxation method (MSRM) is based on a technique of extending Gauss-Seidel type relaxation ideas to systems of nonlinear differential equations and using the Chebyshev pseudospectral methods to solve the resulting system on a sequence of multiple intervals. In this new application, the MSRM is used to solve famous hyperchaotic complex systems such as hyperchaotic complex Lorenz system and the complex permanent magnet synchronous motor. We compare this approach to the Runge-Kutta based ode45 solver to show that the MSRM gives accurate results. PMID:25386624

  14. COMPUTED TOMOGRAPHIC FEATURES OF INCISOR PSEUDO-ODONTOMAS IN PRAIRIE DOGS (CYNOMYS LUDOVICIANUS).

    PubMed

    Pelizzone, Igor; Di Ianni, Francesco; Volta, Antonella; Gnudi, Giacomo; Manfredi, Sabrina; Bertocchi, Mara; Parmigiani, Enrico

    2017-05-01

    Maxillary incisor pseudo-odontomas are common in pet prairie dogs and can cause progressive respiratory obstruction, while mandibular pseudo-odontomas are rarely clinically significant. The aim of this retrospective cross-sectional study was to describe CT features of maxillary and mandibular incisor pseudo-odontomas vs. normal incisors in a group of pet prairie dogs. All pet prairie dogs with head CT scans acquired during the period of 2013-2015 were included. A veterinary radiologist who was aware of final diagnosis reviewed CT scans and recorded qualitative features of affected and normal incisors. Mean density values for the pulp cavity and palatal and buccal dentin were also recorded. A total of 16 prairie dogs were sampled (12 normal maxillary incisors, 20 confirmed maxillary incisor pseudo-odontomas, 20 normal mandibular incisors, 12 presumed mandibular incisor pseudo-odontomas). Maxillary incisors with confirmed pseudo-odontomas had a significantly hyperattenuating pulp and dentin in the reserve crown and apical zone, when compared to normal maxillary incisors. Pseudo-odontomas appeared as enlargements of the apical zone with a globular/multilobular hyperattenuating mass formation haphazardly arranged, encroaching on midline and growing caudally and ventrally. Presumed mandibular incisor pseudo-odontomas had similar CT characteristics. In 60% of prairie dogs with maxillary incisor pseudo-odontomas, the hard palate was deformed and the mass bulged into the oral cavity causing loss of the palatine bone. The common nasal meatus was partially or totally obliterated in 81.8% of prairie dogs with maxillary pseudo-odontomas. Findings supported the use of CT for characterizing extent of involvement and surgical planning in prairie dogs with pseudo-odontomas. © 2017 American College of Veterinary Radiology.

  15. Defect Detection of Steel Surfaces with Global Adaptive Percentile Thresholding of Gradient Image

    NASA Astrophysics Data System (ADS)

    Neogi, Nirbhar; Mohanta, Dusmanta K.; Dutta, Pranab K.

    2017-12-01

    Steel strips are used extensively for white goods, auto bodies and other purposes where surface defects are not acceptable. On-line surface inspection systems can effectively detect and classify defects and help in taking corrective actions. For detection of defects use of gradients is very popular in highlighting and subsequently segmenting areas of interest in a surface inspection system. Most of the time, segmentation by a fixed value threshold leads to unsatisfactory results. As defects can be both very small and large in size, segmentation of a gradient image based on percentile thresholding can lead to inadequate or excessive segmentation of defective regions. A global adaptive percentile thresholding of gradient image has been formulated for blister defect and water-deposit (a pseudo defect) in steel strips. The developed method adaptively changes the percentile value used for thresholding depending on the number of pixels above some specific values of gray level of the gradient image. The method is able to segment defective regions selectively preserving the characteristics of defects irrespective of the size of the defects. The developed method performs better than Otsu method of thresholding and an adaptive thresholding method based on local properties.

  16. Episodic seasonal Pseudo-Bartter syndrome in cystic fibrosis.

    PubMed

    Kintu, Brett; Brightwell, Alex

    2014-06-01

    Pseudo-Bartter syndrome (PBS) describes an uncommon but well recognised complication of cystic fibrosis leading to hypochloraemic, hypokalaemic metabolic alkalosis. Pseudo-Bartter syndrome is usually seen at initial presentation or within the first two years of life in children with cystic fibrosis. Risk factors for development of PBS include warm weather conditions, severe respiratory or pancreatic disease and gastrointestinal losses (e.g. vomiting and diarrhoea). PBS is rare in older children and adolescents although epidemics have been associated with heat wave conditions in warmer climates. In this era of climate change, it is crucial that clinicians consider Pseudo-Bartter syndrome when patients with cystic fibrosis present unwell during summer. Copyright © 2014 Elsevier Ltd. All rights reserved.

  17. Enhanced Representation of Turbulent Flow Phenomena in Large-Eddy Simulations of the Atmospheric Boundary Layer using Grid Refinement with Pseudo-Spectral Numerics

    NASA Astrophysics Data System (ADS)

    Torkelson, G. Q.; Stoll, R., II

    2017-12-01

    Large Eddy Simulation (LES) is a tool commonly used to study the turbulent transport of momentum, heat, and moisture in the Atmospheric Boundary Layer (ABL). For a wide range of ABL LES applications, representing the full range of turbulent length scales in the flow field is a challenge. This is an acute problem in regions of the ABL with strong velocity or scalar gradients, which are typically poorly resolved by standard computational grids (e.g., near the ground surface, in the entrainment zone). Most efforts to address this problem have focused on advanced sub-grid scale (SGS) turbulence model development, or on the use of massive computational resources. While some work exists using embedded meshes, very little has been done on the use of grid refinement. Here, we explore the benefits of grid refinement in a pseudo-spectral LES numerical code. The code utilizes both uniform refinement of the grid in horizontal directions, and stretching of the grid in the vertical direction. Combining the two techniques allows us to refine areas of the flow while maintaining an acceptable grid aspect ratio. In tests that used only refinement of the vertical grid spacing, large grid aspect ratios were found to cause a significant unphysical spike in the stream-wise velocity variance near the ground surface. This was especially problematic in simulations of stably-stratified ABL flows. The use of advanced SGS models was not sufficient to alleviate this issue. The new refinement technique is evaluated using a series of idealized simulation test cases of neutrally and stably stratified ABLs. These test cases illustrate the ability of grid refinement to increase computational efficiency without loss in the representation of statistical features of the flow field.

  18. Model-based spectral estimation of Doppler signals using parallel genetic algorithms.

    PubMed

    Solano González, J; Rodríguez Vázquez, K; García Nocetti, D F

    2000-05-01

    Conventional spectral analysis methods use a fast Fourier transform (FFT) on consecutive or overlapping windowed data segments. For Doppler ultrasound signals, this approach suffers from an inadequate frequency resolution due to the time segment duration and the non-stationarity characteristics of the signals. Parametric or model-based estimators can give significant improvements in the time-frequency resolution at the expense of a higher computational complexity. This work describes an approach which implements in real-time a parametric spectral estimator method using genetic algorithms (GAs) in order to find the optimum set of parameters for the adaptive filter that minimises the error function. The aim is to reduce the computational complexity of the conventional algorithm by using the simplicity associated to GAs and exploiting its parallel characteristics. This will allow the implementation of higher order filters, increasing the spectrum resolution, and opening a greater scope for using more complex methods.

  19. An augmented classical least squares method for quantitative Raman spectral analysis against component information loss.

    PubMed

    Zhou, Yan; Cao, Hui

    2013-01-01

    We propose an augmented classical least squares (ACLS) calibration method for quantitative Raman spectral analysis against component information loss. The Raman spectral signals with low analyte concentration correlations were selected and used as the substitutes for unknown quantitative component information during the CLS calibration procedure. The number of selected signals was determined by using the leave-one-out root-mean-square error of cross-validation (RMSECV) curve. An ACLS model was built based on the augmented concentration matrix and the reference spectral signal matrix. The proposed method was compared with partial least squares (PLS) and principal component regression (PCR) using one example: a data set recorded from an experiment of analyte concentration determination using Raman spectroscopy. A 2-fold cross-validation with Venetian blinds strategy was exploited to evaluate the predictive power of the proposed method. The one-way variance analysis (ANOVA) was used to access the predictive power difference between the proposed method and existing methods. Results indicated that the proposed method is effective at increasing the robust predictive power of traditional CLS model against component information loss and its predictive power is comparable to that of PLS or PCR.

  20. Hyperspectral image classification by a variable interval spectral average and spectral curve matching combined algorithm

    NASA Astrophysics Data System (ADS)

    Senthil Kumar, A.; Keerthi, V.; Manjunath, A. S.; Werff, Harald van der; Meer, Freek van der

    2010-08-01

    Classification of hyperspectral images has been receiving considerable attention with many new applications reported from commercial and military sectors. Hyperspectral images are composed of a large number of spectral channels, and have the potential to deliver a great deal of information about a remotely sensed scene. However, in addition to high dimensionality, hyperspectral image classification is compounded with a coarse ground pixel size of the sensor for want of adequate sensor signal to noise ratio within a fine spectral passband. This makes multiple ground features jointly occupying a single pixel. Spectral mixture analysis typically begins with pixel classification with spectral matching techniques, followed by the use of spectral unmixing algorithms for estimating endmembers abundance values in the pixel. The spectral matching techniques are analogous to supervised pattern recognition approaches, and try to estimate some similarity between spectral signatures of the pixel and reference target. In this paper, we propose a spectral matching approach by combining two schemes—variable interval spectral average (VISA) method and spectral curve matching (SCM) method. The VISA method helps to detect transient spectral features at different scales of spectral windows, while the SCM method finds a match between these features of the pixel and one of library spectra by least square fitting. Here we also compare the performance of the combined algorithm with other spectral matching techniques using a simulated and the AVIRIS hyperspectral data sets. Our results indicate that the proposed combination technique exhibits a stronger performance over the other methods in the classification of both the pure and mixed class pixels simultaneously.

  1. Detection of the power lines in UAV remote sensed images using spectral-spatial methods.

    PubMed

    Bhola, Rishav; Krishna, Nandigam Hari; Ramesh, K N; Senthilnath, J; Anand, Gautham

    2018-01-15

    In this paper, detection of the power lines on images acquired by Unmanned Aerial Vehicle (UAV) based remote sensing is carried out using spectral-spatial methods. Spectral clustering was performed using Kmeans and Expectation Maximization (EM) algorithm to classify the pixels into the power lines and non-power lines. The spectral clustering methods used in this study are parametric in nature, to automate the number of clusters Davies-Bouldin index (DBI) is used. The UAV remote sensed image is clustered into the number of clusters determined by DBI. The k clustered image is merged into 2 clusters (power lines and non-power lines). Further, spatial segmentation was performed using morphological and geometric operations, to eliminate the non-power line regions. In this study, UAV images acquired at different altitudes and angles were analyzed to validate the robustness of the proposed method. It was observed that the EM with spatial segmentation (EM-Seg) performed better than the Kmeans with spatial segmentation (Kmeans-Seg) on most of the UAV images. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. A spectral nudging method for the ACCESS1.3 atmospheric model

    NASA Astrophysics Data System (ADS)

    Uhe, P.; Thatcher, M.

    2015-06-01

    A convolution-based method of spectral nudging of atmospheric fields is developed in the Australian Community Climate and Earth Systems Simulator (ACCESS) version 1.3 which uses the UK Met Office Unified Model version 7.3 as its atmospheric component. The use of convolutions allow for flexibility in application to different atmospheric grids. An approximation using one-dimensional convolutions is applied, improving the time taken by the nudging scheme by 10-30 times compared with a version using a two-dimensional convolution, without measurably degrading its performance. Care needs to be taken in the order of the convolutions and the frequency of nudging to obtain the best outcome. The spectral nudging scheme is benchmarked against a Newtonian relaxation method, nudging winds and air temperature towards ERA-Interim reanalyses. We find that the convolution approach can produce results that are competitive with Newtonian relaxation in both the effectiveness and efficiency of the scheme, while giving the added flexibility of choosing which length scales to nudge.

  3. A spectral nudging method for the ACCESS1.3 atmospheric model

    NASA Astrophysics Data System (ADS)

    Uhe, P.; Thatcher, M.

    2014-10-01

    A convolution based method of spectral nudging of atmospheric fields is developed in the Australian Community Climate and Earth Systems Simulator (ACCESS) version 1.3 which uses the UK Met Office Unified Model version 7.3 as its atmospheric component. The use of convolutions allow flexibility in application to different atmospheric grids. An approximation using one-dimensional convolutions is applied, improving the time taken by the nudging scheme by 10 to 30 times compared with a version using a two-dimensional convolution, without measurably degrading its performance. Care needs to be taken in the order of the convolutions and the frequency of nudging to obtain the best outcome. The spectral nudging scheme is benchmarked against a Newtonian relaxation method, nudging winds and air temperature towards ERA-Interim reanalyses. We find that the convolution approach can produce results that are competitive with Newtonian relaxation in both the effectiveness and efficiency of the scheme, while giving the added flexibility of choosing which length scales to nudge.

  4. Spectral analysis method and sample generation for real time visualization of speech

    NASA Astrophysics Data System (ADS)

    Hobohm, Klaus

    A method for translating speech signals into optical models, characterized by high sound discrimination and learnability and designed to provide to deaf persons a feedback towards control of their way of speaking, is presented. Important properties of speech production and perception processes and organs involved in these mechanisms are recalled in order to define requirements for speech visualization. It is established that the spectral representation of time, frequency and amplitude resolution of hearing must be fair and continuous variations of acoustic parameters of speech signal must be depicted by a continuous variation of images. A color table was developed for dynamic illustration and sonograms were generated with five spectral analysis methods such as Fourier transformations and linear prediction coding. For evaluating sonogram quality, test persons had to recognize consonant/vocal/consonant words and an optimized analysis method was achieved with a fast Fourier transformation and a postprocessor. A hardware concept of a real time speech visualization system, based on multiprocessor technology in a personal computer, is presented.

  5. Speech Enhancement, Gain, and Noise Spectrum Adaptation Using Approximate Bayesian Estimation

    PubMed Central

    Hao, Jiucang; Attias, Hagai; Nagarajan, Srikantan; Lee, Te-Won; Sejnowski, Terrence J.

    2010-01-01

    This paper presents a new approximate Bayesian estimator for enhancing a noisy speech signal. The speech model is assumed to be a Gaussian mixture model (GMM) in the log-spectral domain. This is in contrast to most current models in frequency domain. Exact signal estimation is a computationally intractable problem. We derive three approximations to enhance the efficiency of signal estimation. The Gaussian approximation transforms the log-spectral domain GMM into the frequency domain using minimal Kullback–Leiber (KL)-divergency criterion. The frequency domain Laplace method computes the maximum a posteriori (MAP) estimator for the spectral amplitude. Correspondingly, the log-spectral domain Laplace method computes the MAP estimator for the log-spectral amplitude. Further, the gain and noise spectrum adaptation are implemented using the expectation–maximization (EM) algorithm within the GMM under Gaussian approximation. The proposed algorithms are evaluated by applying them to enhance the speeches corrupted by the speech-shaped noise (SSN). The experimental results demonstrate that the proposed algorithms offer improved signal-to-noise ratio, lower word recognition error rate, and less spectral distortion. PMID:20428253

  6. EMD self-adaptive selecting relevant modes algorithm for FBG spectrum signal

    NASA Astrophysics Data System (ADS)

    Chen, Yong; Wu, Chun-ting; Liu, Huan-lin

    2017-07-01

    Noise may reduce the demodulation accuracy of fiber Bragg grating (FBG) sensing signal so as to affect the quality of sensing detection. Thus, the recovery of a signal from observed noisy data is necessary. In this paper, a precise self-adaptive algorithm of selecting relevant modes is proposed to remove the noise of signal. Empirical mode decomposition (EMD) is first used to decompose a signal into a set of modes. The pseudo modes cancellation is introduced to identify and eliminate false modes, and then the Mutual Information (MI) of partial modes is calculated. MI is used to estimate the critical point of high and low frequency components. Simulation results show that the proposed algorithm estimates the critical point more accurately than the traditional algorithms for FBG spectral signal. While, compared to the similar algorithms, the signal noise ratio of the signal can be improved more than 10 dB after processing by the proposed algorithm, and correlation coefficient can be increased by 0.5, so it demonstrates better de-noising effect.

  7. "iSS-Hyb-mRMR": Identification of splicing sites using hybrid space of pseudo trinucleotide and pseudo tetranucleotide composition.

    PubMed

    Iqbal, Muhammad; Hayat, Maqsood

    2016-05-01

    Gene splicing is a vital source of protein diversity. Perfectly eradication of introns and joining exons is the prominent task in eukaryotic gene expression, as exons are usually interrupted by introns. Identification of splicing sites through experimental techniques is complicated and time-consuming task. With the avalanche of genome sequences generated in the post genomic age, it remains a complicated and challenging task to develop an automatic, robust and reliable computational method for fast and effective identification of splicing sites. In this study, a hybrid model "iSS-Hyb-mRMR" is proposed for quickly and accurately identification of splicing sites. Two sample representation methods namely; pseudo trinucleotide composition (PseTNC) and pseudo tetranucleotide composition (PseTetraNC) were used to extract numerical descriptors from DNA sequences. Hybrid model was developed by concatenating PseTNC and PseTetraNC. In order to select high discriminative features, minimum redundancy maximum relevance algorithm was applied on the hybrid feature space. The performance of these feature representation methods was tested using various classification algorithms including K-nearest neighbor, probabilistic neural network, general regression neural network, and fitting network. Jackknife test was used for evaluation of its performance on two benchmark datasets S1 and S2, respectively. The predictor, proposed in the current study achieved an accuracy of 93.26%, sensitivity of 88.77%, and specificity of 97.78% for S1, and the accuracy of 94.12%, sensitivity of 87.14%, and specificity of 98.64% for S2, respectively. It is observed, that the performance of proposed model is higher than the existing methods in the literature so for; and will be fruitful in the mechanism of RNA splicing, and other research academia. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  8. Pseudo Steady-State Free Precession for MR-Fingerprinting.

    PubMed

    Assländer, Jakob; Glaser, Steffen J; Hennig, Jürgen

    2017-03-01

    This article discusses the signal behavior in the case the flip angle in steady-state free precession sequences is continuously varied as suggested for MR-fingerprinting sequences. Flip angle variations prevent the establishment of a steady state and introduce instabilities regarding to magnetic field inhomogeneities and intravoxel dephasing. We show how a pseudo steady state can be achieved, which restores the spin echo nature of steady-state free precession. Based on geometrical considerations, relationships between the flip angle, repetition and echo time are derived that suffice to the establishment of a pseudo steady state. The theory is tested with Bloch simulations as well as phantom and in vivo experiments. A typical steady-state free precession passband can be restored with the proposed conditions. The stability of the pseudo steady state is demonstrated by comparing the evolution of the signal of a single isochromat to one resulting from a spin ensemble. As confirmed by experiments, magnetization in a pseudo steady state can be described with fewer degrees of freedom compared to the original fingerprinting and the pseudo steady state results in more reliable parameter maps. The proposed conditions restore the spin-echo-like signal behavior typical for steady-state free precession in fingerprinting sequences, making this approach more robust to B 0 variations. Magn Reson Med 77:1151-1161, 2017. © 2016 International Society for Magnetic Resonance in Medicine. © 2016 International Society for Magnetic Resonance in Medicine.

  9. Adaptive reconnection-based arbitrary Lagrangian Eulerian method

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bo, Wurigen; Shashkov, Mikhail

    We present a new adaptive Arbitrary Lagrangian Eulerian (ALE) method. This method is based on the reconnection-based ALE (ReALE) methodology of Refs. [35], [34] and [6]. The main elements in a standard ReALE method are: an explicit Lagrangian phase on an arbitrary polygonal (in 2D) mesh in which the solution and positions of grid nodes are updated; a rezoning phase in which a new grid is defined by changing the connectivity (using Voronoi tessellation) but not the number of cells; and a remapping phase in which the Lagrangian solution is transferred onto the new grid. Furthermore, in the standard ReALEmore » method, the rezoned mesh is smoothed by using one or several steps toward centroidal Voronoi tessellation, but it is not adapted to the solution in any way.« less

  10. Adaptive reconnection-based arbitrary Lagrangian Eulerian method

    DOE PAGES

    Bo, Wurigen; Shashkov, Mikhail

    2015-07-21

    We present a new adaptive Arbitrary Lagrangian Eulerian (ALE) method. This method is based on the reconnection-based ALE (ReALE) methodology of Refs. [35], [34] and [6]. The main elements in a standard ReALE method are: an explicit Lagrangian phase on an arbitrary polygonal (in 2D) mesh in which the solution and positions of grid nodes are updated; a rezoning phase in which a new grid is defined by changing the connectivity (using Voronoi tessellation) but not the number of cells; and a remapping phase in which the Lagrangian solution is transferred onto the new grid. Furthermore, in the standard ReALEmore » method, the rezoned mesh is smoothed by using one or several steps toward centroidal Voronoi tessellation, but it is not adapted to the solution in any way.« less

  11. High temperature spectral emissivity measurement using integral blackbody method

    NASA Astrophysics Data System (ADS)

    Pan, Yijie; Dong, Wei; Lin, Hong; Yuan, Zundong; Bloembergen, Pieter

    2016-10-01

    Spectral emissivity is a critical material's thermos-physical property for heat design and radiation thermometry. A prototype instrument based upon an integral blackbody method was developed to measure material's spectral emissivity above 1000 °. The system was implemented with an optimized commercial variable-high-temperature blackbody, a high speed linear actuator, a linear pyrometer, and an in-house designed synchronization circuit. A sample was placed in a crucible at the bottom of the blackbody furnace, by which the sample and the tube formed a simulated blackbody which had an effective total emissivity greater than 0.985. During the measurement, the sample was pushed to the end opening of the tube by a graphite rod which was actuated through a pneumatic cylinder. A linear pyrometer was used to monitor the brightness temperature of the sample surface through the measurement. The corresponding opto-converted voltage signal was fed and recorded by a digital multi-meter. A physical model was proposed to numerically evaluate the temperature drop along the process. Tube was discretized as several isothermal cylindrical rings, and the temperature profile of the tube was measurement. View factors between sample and rings were calculated and updated along the whole pushing process. The actual surface temperature of the sample at the end opening was obtained. Taking advantages of the above measured voltage profile and the calculated true temperature, spectral emissivity under this temperature point was calculated.

  12. Accurate spectral solutions for the parabolic and elliptic partial differential equations by the ultraspherical tau method

    NASA Astrophysics Data System (ADS)

    Doha, E. H.; Abd-Elhameed, W. M.

    2005-09-01

    We present a double ultraspherical spectral methods that allow the efficient approximate solution for the parabolic partial differential equations in a square subject to the most general inhomogeneous mixed boundary conditions. The differential equations with their boundary and initial conditions are reduced to systems of ordinary differential equations for the time-dependent expansion coefficients. These systems are greatly simplified by using tensor matrix algebra, and are solved by using the step-by-step method. Numerical applications of how to use these methods are described. Numerical results obtained compare favorably with those of the analytical solutions. Accurate double ultraspherical spectral approximations for Poisson's and Helmholtz's equations are also noted. Numerical experiments show that spectral approximation based on Chebyshev polynomials of the first kind is not always better than others based on ultraspherical polynomials.

  13. Lensless digital holography with diffuse illumination through a pseudo-random phase mask.

    PubMed

    Bernet, Stefan; Harm, Walter; Jesacher, Alexander; Ritsch-Marte, Monika

    2011-12-05

    Microscopic imaging with a setup consisting of a pseudo-random phase mask, and an open CMOS camera, without an imaging objective, is demonstrated. The pseudo random phase mask acts as a diffuser for an incoming laser beam, scattering a speckle pattern to a CMOS chip, which is recorded once as a reference. A sample which is afterwards inserted somewhere in the optical beam path changes the speckle pattern. A single (non-iterative) image processing step, comparing the modified speckle pattern with the previously recorded one, generates a sharp image of the sample. After a first calibration the method works in real-time and allows quantitative imaging of complex (amplitude and phase) samples in an extended three-dimensional volume. Since no lenses are used, the method is free from lens abberations. Compared to standard inline holography the diffuse sample illumination improves the axial sectioning capability by increasing the effective numerical aperture in the illumination path, and it suppresses the undesired so-called twin images. For demonstration, a high resolution spatial light modulator (SLM) is programmed to act as the pseudo-random phase mask. We show experimental results, imaging microscopic biological samples, e.g. insects, within an extended volume at a distance of 15 cm with a transverse and longitudinal resolution of about 60 μm and 400 μm, respectively.

  14. Selecting algorithms, sensors, and linear bases for optimum spectral recovery of skylight.

    PubMed

    López-Alvarez, Miguel A; Hernández-Andrés, Javier; Valero, Eva M; Romero, Javier

    2007-04-01

    In a previous work [Appl. Opt.44, 5688 (2005)] we found the optimum sensors for a planned multispectral system for measuring skylight in the presence of noise by adapting a linear spectral recovery algorithm proposed by Maloney and Wandell [J. Opt. Soc. Am. A3, 29 (1986)]. Here we continue along these lines by simulating the responses of three to five Gaussian sensors and recovering spectral information from noise-affected sensor data by trying out four different estimation algorithms, three different sizes for the training set of spectra, and various linear bases. We attempt to find the optimum combination of sensors, recovery method, linear basis, and matrix size to recover the best skylight spectral power distributions from colorimetric and spectral (in the visible range) points of view. We show how all these parameters play an important role in the practical design of a real multispectral system and how to obtain several relevant conclusions from simulating the behavior of sensors in the presence of noise.

  15. Calibration of the modulation transfer function of surface profilometers with binary pseudo-random test standards: expanding the application range

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yashchuk, Valeriy V.; Anderson, Erik H.; Barber, Samuel K.

    2011-03-14

    A modulation transfer function (MTF) calibration method based on binary pseudo-random (BPR) gratings and arrays [Proc. SPIE 7077-7 (2007), Opt. Eng. 47, 073602 (2008)] has been proven to be an effective MTF calibration method for a number of interferometric microscopes and a scatterometer [Nucl. Instr. and Meth. A616, 172 (2010)]. Here we report on a further expansion of the application range of the method. We describe the MTF calibration of a 6 inch phase shifting Fizeau interferometer. Beyond providing a direct measurement of the interferometer's MTF, tests with a BPR array surface have revealed an asymmetry in the instrument's datamore » processing algorithm that fundamentally limits its bandwidth. Moreover, the tests have illustrated the effects of the instrument's detrending and filtering procedures on power spectral density measurements. The details of the development of a BPR test sample suitable for calibration of scanning and transmission electron microscopes are also presented. Such a test sample is realized as a multilayer structure with the layer thicknesses of two materials corresponding to BPR sequence. The investigations confirm the universal character of the method that makes it applicable to a large variety of metrology instrumentation with spatial wavelength bandwidths from a few nanometers to hundreds of millimeters.« less

  16. Calibration of the modulation transfer function of surface profilometers with binary pseudo-random test standards: Expanding the application range

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yashchuk, Valeriy V; Anderson, Erik H.; Barber, Samuel K.

    2010-07-26

    A modulation transfer function (MTF) calibration method based on binary pseudo-random (BPR) gratings and arrays [Proc. SPIE 7077-7 (2007), Opt. Eng. 47(7), 073602-1-5 (2008)] has been proven to be an effective MTF calibration method for a number of interferometric microscopes and a scatterometer [Nucl. Instr. and Meth. A 616, 172-82 (2010]. Here we report on a significant expansion of the application range of the method. We describe the MTF calibration of a 6 inch phase shifting Fizeau interferometer. Beyond providing a direct measurement of the interferometer's MTF, tests with a BPR array surface have revealed an asymmetry in the instrument'smore » data processing algorithm that fundamentally limits its bandwidth. Moreover, the tests have illustrated the effects of the instrument's detrending and filtering procedures on power spectral density measurements. The details of the development of a BPR test sample suitable for calibration of scanning and transmission electron microscopes are also presented. Such a test sample is realized as a multilayer structure with the layer thicknesses of two materials corresponding to BPR sequence. The investigations confirm the universal character of the method that makes it applicable to a large variety of metrology instrumentation with spatial wavelength bandwidths from a few nanometers to hundreds of millimeters.« less

  17. Elimination of interference component in Wigner-Ville distribution for the signal with 1/f spectral characteristic.

    PubMed

    Chan, H L; Lin, J L; Huang, H H; Wu, C P

    1997-09-01

    A new technique for interference-term suppression in Wigner-Ville distribution (WVD) is proposed for the signal with 1/f spectrum shape. The spectral characteristic of the signal is altered by f alpha filtering before time-frequency analysis and compensated after analysis. With the utilization of the proposed technique in smoothed pseudo Wigner-Ville distribution, an excellent suppression of interference component can be achieved.

  18. Application of spectral methods for high-frequency financial data to quantifying states of market participants

    NASA Astrophysics Data System (ADS)

    Sato, Aki-Hiro

    2008-06-01

    Empirical analysis of the foreign exchange market is conducted based on methods to quantify similarities among multi-dimensional time series with spectral distances introduced in [A.-H. Sato, Physica A 382 (2007) 258-270]. As a result it is found that the similarities among currency pairs fluctuate with the rotation of the earth, and that the similarities among best quotation rates are associated with those among quotation frequencies. Furthermore, it is shown that the Jensen-Shannon spectral divergence is proportional to a mean of the Kullback-Leibler spectral distance both empirically and numerically. It is confirmed that these spectral distances are connected with distributions for behavioural parameters of the market participants from numerical simulation. This concludes that spectral distances of representative quantities of financial markets are related into diversification of behavioural parameters of the market participants.

  19. Pseudo-random bit generator based on lag time series

    NASA Astrophysics Data System (ADS)

    García-Martínez, M.; Campos-Cantón, E.

    2014-12-01

    In this paper, we present a pseudo-random bit generator (PRBG) based on two lag time series of the logistic map using positive and negative values in the bifurcation parameter. In order to hidden the map used to build the pseudo-random series we have used a delay in the generation of time series. These new series when they are mapped xn against xn+1 present a cloud of points unrelated to the logistic map. Finally, the pseudo-random sequences have been tested with the suite of NIST giving satisfactory results for use in stream ciphers.

  20. High-precision solution to the moving load problem using an improved spectral element method

    NASA Astrophysics Data System (ADS)

    Wen, Shu-Rui; Wu, Zhi-Jing; Lu, Nian-Li

    2018-02-01

    In this paper, the spectral element method (SEM) is improved to solve the moving load problem. In this method, a structure with uniform geometry and material properties is considered as a spectral element, which means that the element number and the degree of freedom can be reduced significantly. Based on the variational method and the Laplace transform theory, the spectral stiffness matrix and the equivalent nodal force of the beam-column element are established. The static Green function is employed to deduce the improved function. The proposed method is applied to two typical engineering practices—the one-span bridge and the horizontal jib of the tower crane. The results have revealed the following. First, the new method can yield extremely high-precision results of the dynamic deflection, the bending moment and the shear force in the moving load problem. In most cases, the relative errors are smaller than 1%. Second, by comparing with the finite element method, one can obtain the highly accurate results using the improved SEM with smaller element numbers. Moreover, the method can be widely used for statically determinate as well as statically indeterminate structures. Third, the dynamic deflection of the twin-lift jib decreases with the increase in the moving load speed, whereas the curvature of the deflection increases. Finally, the dynamic deflection, the bending moment and the shear force of the jib will all increase as the magnitude of the moving load increases.

  1. Wavelet methods in multi-conjugate adaptive optics

    NASA Astrophysics Data System (ADS)

    Helin, T.; Yudytskiy, M.

    2013-08-01

    The next generation ground-based telescopes rely heavily on adaptive optics for overcoming the limitation of atmospheric turbulence. In the future adaptive optics modalities, like multi-conjugate adaptive optics (MCAO), atmospheric tomography is the major mathematical and computational challenge. In this severely ill-posed problem, a fast and stable reconstruction algorithm is needed that can take into account many real-life phenomena of telescope imaging. We introduce a novel reconstruction method for the atmospheric tomography problem and demonstrate its performance and flexibility in the context of MCAO. Our method is based on using locality properties of compactly supported wavelets, both in the spatial and frequency domains. The reconstruction in the atmospheric tomography problem is obtained by solving the Bayesian MAP estimator with a conjugate-gradient-based algorithm. An accelerated algorithm with preconditioning is also introduced. Numerical performance is demonstrated on the official end-to-end simulation tool OCTOPUS of European Southern Observatory.

  2. Causal inference in survival analysis using pseudo-observations.

    PubMed

    Andersen, Per K; Syriopoulou, Elisavet; Parner, Erik T

    2017-07-30

    Causal inference for non-censored response variables, such as binary or quantitative outcomes, is often based on either (1) direct standardization ('G-formula') or (2) inverse probability of treatment assignment weights ('propensity score'). To do causal inference in survival analysis, one needs to address right-censoring, and often, special techniques are required for that purpose. We will show how censoring can be dealt with 'once and for all' by means of so-called pseudo-observations when doing causal inference in survival analysis. The pseudo-observations can be used as a replacement of the outcomes without censoring when applying 'standard' causal inference methods, such as (1) or (2) earlier. We study this idea for estimating the average causal effect of a binary treatment on the survival probability, the restricted mean lifetime, and the cumulative incidence in a competing risks situation. The methods will be illustrated in a small simulation study and via a study of patients with acute myeloid leukemia who received either myeloablative or non-myeloablative conditioning before allogeneic hematopoetic cell transplantation. We will estimate the average causal effect of the conditioning regime on outcomes such as the 3-year overall survival probability and the 3-year risk of chronic graft-versus-host disease. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

  3. Solution-adaptive finite element method in computational fracture mechanics

    NASA Technical Reports Server (NTRS)

    Min, J. B.; Bass, J. M.; Spradley, L. W.

    1993-01-01

    Some recent results obtained using solution-adaptive finite element method in linear elastic two-dimensional fracture mechanics problems are presented. The focus is on the basic issue of adaptive finite element method for validating the applications of new methodology to fracture mechanics problems by computing demonstration problems and comparing the stress intensity factors to analytical results.

  4. On the time-reversal symmetry in pseudo-Hermitian systems

    NASA Astrophysics Data System (ADS)

    Choutri, B.; Cherbal, O.; Ighezou, F. Z.; Trifonov, D. A.

    2014-11-01

    In a recent paper [M. Sato, K. Hasebe, K. Esaki, and M. Kohmoto, Prog. Theor. Phys. 127, 937 (2012)] Sato and his collaborators established a generalization of the Kramers degeneracy structure to pseudo-Hermitian Hamiltonian systems, admitting even time-reversal symmetry, T2=1. This extension is achieved using the mathematical structure of split-quaternions instead of quaternions, usually adopted in the case of Hermitian Hamiltonians with odd time-reversal symmetry, T2=-1. Here we find that the metric operator for the pseudo-Hermitian Hamiltonian H that allows the realization of the generalized Kramers degeneracy is necessarily indefinite. We show that such H with real spectrum also possesses odd antilinear symmetry induced from the existing odd time-reversal symmetry of its Hermitian counterpart h, so that the generalized Kramers degeneracy of H is in fact crypto-Hermitian Kramers degeneracy. We study in greater detail a new example of the pseudo-Hermitian split-quaternionic four-level Hamiltonian system, which admits an indefinite metric operator and time-reversal symmetry and, as a consequence, a generalized Kramers degeneracy structure. We provide a complete solution of the eigenvalue problem, construct pseudo-Hermitian ladder operators closing the normal and abnormal pseudo-fermionic algebras, and show that this system fulfills a crypto-Hermitian degeneracy.

  5. Age bimodality in the central region of pseudo-bulges in S0 galaxies

    NASA Astrophysics Data System (ADS)

    Mishra, Preetish K.; Barway, Sudhanshu; Wadadekar, Yogesh

    2017-11-01

    We present evidence for bimodal stellar age distribution of pseudo-bulges of S0 galaxies as probed by the Dn(4000) index. We do not observe any bimodality in age distribution for pseudo-bulges in spiral galaxies. Our sample is flux limited and contains 2067 S0 and 2630 spiral galaxies drawn from the Sloan Digital Sky Survey. We identify pseudo-bulges in S0 and spiral galaxies, based on the position of the bulge on the Kormendy diagram and their central velocity dispersion. Dividing the pseudo-bulges of S0 galaxies into those containing old and young stellar populations, we study the connection between global star formation and pseudo-bulge age on the u - r colour-mass diagram. We find that most old pseudo-bulges are hosted by passive galaxies while majority of young bulges are hosted by galaxies that are star forming. Dividing our sample of S0 galaxies into early-type S0s and S0/a galaxies, we find that old pseudo-bulges are mainly hosted by early-type S0 galaxies while most of the pseudo-bulges in S0/a galaxies are young. We speculate that morphology plays a strong role in quenching of star formation in the disc of these S0 galaxies, which stops the growth of pseudo-bulges, giving rise to old pseudo-bulges and the observed age bimodality.

  6. "Ersatz" and "hybrid" NMR spectral estimates using the filter diagonalization method.

    PubMed

    Ridge, Clark D; Shaka, A J

    2009-03-12

    The filter diagonalization method (FDM) is an efficient and elegant way to make a spectral estimate purely in terms of Lorentzian peaks. As NMR spectral peaks of liquids conform quite well to this model, the FDM spectral estimate can be accurate with far fewer time domain points than conventional discrete Fourier transform (DFT) processing. However, noise is not efficiently characterized by a finite number of Lorentzian peaks, or by any other analytical form, for that matter. As a result, noise can affect the FDM spectrum in different ways than it does the DFT spectrum, and the effect depends on the dimensionality of the spectrum. Regularization to suppress (or control) the influence of noise to give an "ersatz", or EFDM, spectrum is shown to sometimes miss weak features, prompting a more conservative implementation of filter diagonalization. The spectra obtained, called "hybrid" or HFDM spectra, are acquired by using regularized FDM to obtain an "infinite time" spectral estimate and then adding to it the difference between the DFT of the data and the finite time FDM estimate, over the same time interval. HFDM has a number of advantages compared to the EFDM spectra, where all features must be Lorentzian. They also show better resolution than DFT spectra. The HFDM spectrum is a reliable and robust way to try to extract more information from noisy, truncated data records and is less sensitive to the choice of regularization parameter. In multidimensional NMR of liquids, HFDM is a conservative way to handle the problems of noise, truncation, and spectral peaks that depart significantly from the model of a multidimensional Lorentzian peak.

  7. Percutaneous endoscopic cecostomy (introducer method) in chronic intestinal pseudo-obstruction: Report of two cases and literature review.

    PubMed

    Küllmer, Armin; Schmidt, Arthur; Caca, Karel

    2016-03-01

    We report on two patients with recurrent episodes of chronic intestinal pseudo-obstruction (CIPO). A 50-year-old woman with severe multiple sclerosis and an 84-year-old man with Parkinson's disease and dementia had multiple hospital admissions because of pain and distended abdomen. Radiographic and endoscopic findings showed massive dilation of the colon without any evidence of obstruction. Conservative management resolved symptoms only for a short period of time. As these patients were poor candidates for any surgical treatment we carried out percutaneous endoscopic colostomy by placing a 20-Fr tube in the cecum with the introducer method. The procedure led to durable symptom relief without complications. We present these two cases and give a review through the existing literature of the procedure in CIPO. © 2015 Japan Gastroenterological Endoscopy Society.

  8. A method for fast selecting feature wavelengths from the spectral information of crop nitrogen

    USDA-ARS?s Scientific Manuscript database

    Research on a method for fast selecting feature wavelengths from the nitrogen spectral information is necessary, which can determine the nitrogen content of crops. Based on the uniformity of uniform design, this paper proposed an improved particle swarm optimization (PSO) method. The method can ch...

  9. The use of spectral methods in bidomain studies.

    PubMed

    Trayanova, N; Pilkington, T

    1992-01-01

    A Fourier transform method is developed for solving the bidomain coupled differential equations governing the intracellular and extracellular potentials on a finite sheet of cardiac cells undergoing stimulation. The spectral formulation converts the system of differential equations into a "diagonal" system of algebraic equations. Solving the algebraic equations directly and taking the inverse transform of the potentials proved numerically less expensive than solving the coupled differential equations by means of traditional numerical techniques, such as finite differences; the comparison between the computer execution times showed that the Fourier transform method was about 40 times faster than the finite difference method. By application of the Fourier transform method, transmembrane potential distributions in the two-dimensional myocardial slice were calculated. For a tissue characterized by a ratio of the intra- to extracellular conductivities that is different in all principal directions, the transmembrane potential distribution exhibits a rather complicated geometrical pattern. The influence of the different anisotropy ratios, the finite tissue size, and the stimuli configuration on the pattern of membrane polarization is investigated.

  10. Numerical simulations of thermoacoustic waves in transcritical fluids employing the spectral difference approach

    NASA Astrophysics Data System (ADS)

    Scalo, Carlo; Migliorino, Mario Tindaro; Chapelier, Jean-Baptiste

    2017-11-01

    We investigate the stability properties of thermoacoustically unstable planar waves in transcritical fluids via high-fidelity Navier-Stokes simulations based on a Spectral Difference (SD) discretization coupled with the Peng-Robinson equation of state and Chung's method for the fluid transport properties. A canonical thermoacoustically unstable standing-wave resonator filled with supercritical CO2 kept in pseudoboiling conditions in the stack is considered. Real fluid effects near the critical point are shown to boost thermoacoustic energy production, as also confirmed by companion eigenvalue analysis supporting the closure of the acoustic energy budgets. A kink in the eigenmode shape is observed at the location of pseudo phase change, consistent with the abrupt change in base impedance. The current study demonstrates a transformative approach to thermoacoustic energy generation, exploiting otherwise unwanted fluid dynamics instabilities commonly observed in aeronautical applications employing transcritical fluids.

  11. TU-E-217BCD-04: Spectral Breast CT: Effect of Adaptive Filtration on CT Numbers, CT Noise, and CNR.

    PubMed

    Silkwood, J; Matthews, K; Shikhaliev, P

    2012-06-01

    Photon counting spectral breast CT is feasible in part due to using an adaptive filter. An adaptive filter provides flat x-ray intensity profile and constant x-ray energy spectrum across detector surface, decreases required detector count rate, and eliminates beam hardening artifacts. However, the altered x-ray exposure profiles at the breast and detector surface may influence the distribution of CT noise, CT numbers, and contrast to noise ratio (CNR) across the CT images. The purpose of this work was to investigate these effects. Images of a CT phantom with and without adaptive filter were simulated at 60kVp, 90kVp, and 120kVp tube voltages and 660 mR total skin exposure. The CT phantom with water content had 14cm diameter, contrast elements representing adipose tissue and 2.5mg/cc iodine contrast located at 1cm, 3.5cm, and 6cm from center of the phantom. The CT numbers, CT noise, and CNR were measured at multiple locations for several filter/exposure combinations: (1)without adaptive filter for 660mR skin exposure; (2)with adaptive filter for 660mR skin exposure along central axis (mean skin exposure across the breast was <660mR); and (3)with adaptive filter for scaled exposure (mean skin exposure was 660mR). Beam hardening (cupping) artifacts had 47HU magnitude without adaptive filter but were eliminated with adaptive filter. CNR of contrast elements was comparable for (1) and (2) over central parts but was higher by 20-30% for (1) near the edge of the phantom. CNR was higher by 20-30% in (3) as compared to (2) over central parts and comparable near the edges. The adaptive filter provided: uniform distribution of CT noise, CNR, and CT numbers across CT images; comparable or better CNR with no dose penalty to the breast; and eliminated beam hardening artifacts. © 2012 American Association of Physicists in Medicine.

  12. Probabilistic Air Segmentation and Sparse Regression Estimated Pseudo CT for PET/MR Attenuation Correction

    PubMed Central

    Chen, Yasheng; Juttukonda, Meher; Su, Yi; Benzinger, Tammie; Rubin, Brian G.; Lee, Yueh Z.; Lin, Weili; Shen, Dinggang; Lalush, David

    2015-01-01

    Purpose To develop a positron emission tomography (PET) attenuation correction method for brain PET/magnetic resonance (MR) imaging by estimating pseudo computed tomographic (CT) images from T1-weighted MR and atlas CT images. Materials and Methods In this institutional review board–approved and HIPAA-compliant study, PET/MR/CT images were acquired in 20 subjects after obtaining written consent. A probabilistic air segmentation and sparse regression (PASSR) method was developed for pseudo CT estimation. Air segmentation was performed with assistance from a probabilistic air map. For nonair regions, the pseudo CT numbers were estimated via sparse regression by using atlas MR patches. The mean absolute percentage error (MAPE) on PET images was computed as the normalized mean absolute difference in PET signal intensity between a method and the reference standard continuous CT attenuation correction method. Friedman analysis of variance and Wilcoxon matched-pairs tests were performed for statistical comparison of MAPE between the PASSR method and Dixon segmentation, CT segmentation, and population averaged CT atlas (mean atlas) methods. Results The PASSR method yielded a mean MAPE ± standard deviation of 2.42% ± 1.0, 3.28% ± 0.93, and 2.16% ± 1.75, respectively, in the whole brain, gray matter, and white matter, which were significantly lower than the Dixon, CT segmentation, and mean atlas values (P < .01). Moreover, 68.0% ± 16.5, 85.8% ± 12.9, and 96.0% ± 2.5 of whole-brain volume had within ±2%, ±5%, and ±10% percentage error by using PASSR, respectively, which was significantly higher than other methods (P < .01). Conclusion PASSR outperformed the Dixon, CT segmentation, and mean atlas methods by reducing PET error owing to attenuation correction. © RSNA, 2014 PMID:25521778

  13. Prediction of protein S-nitrosylation sites based on adapted normal distribution bi-profile Bayes and Chou's pseudo amino acid composition.

    PubMed

    Jia, Cangzhi; Lin, Xin; Wang, Zhiping

    2014-06-10

    Protein S-nitrosylation is a reversible post-translational modification by covalent modification on the thiol group of cysteine residues by nitric oxide. Growing evidence shows that protein S-nitrosylation plays an important role in normal cellular function as well as in various pathophysiologic conditions. Because of the inherent chemical instability of the S-NO bond and the low abundance of endogenous S-nitrosylated proteins, the unambiguous identification of S-nitrosylation sites by commonly used proteomic approaches remains challenging. Therefore, computational prediction of S-nitrosylation sites has been considered as a powerful auxiliary tool. In this work, we mainly adopted an adapted normal distribution bi-profile Bayes (ANBPB) feature extraction model to characterize the distinction of position-specific amino acids in 784 S-nitrosylated and 1568 non-S-nitrosylated peptide sequences. We developed a support vector machine prediction model, iSNO-ANBPB, by incorporating ANBPB with the Chou's pseudo amino acid composition. In jackknife cross-validation experiments, iSNO-ANBPB yielded an accuracy of 65.39% and a Matthew's correlation coefficient (MCC) of 0.3014. When tested on an independent dataset, iSNO-ANBPB achieved an accuracy of 63.41% and a MCC of 0.2984, which are much higher than the values achieved by the existing predictors SNOSite, iSNO-PseAAC, the Li et al. algorithm, and iSNO-AAPair. On another training dataset, iSNO-ANBPB also outperformed GPS-SNO and iSNO-PseAAC in the 10-fold crossvalidation test.

  14. Privacy protection in surveillance systems based on JPEG DCT baseline compression and spectral domain watermarking

    NASA Astrophysics Data System (ADS)

    Sablik, Thomas; Velten, Jörg; Kummert, Anton

    2015-03-01

    An novel system for automatic privacy protection in digital media based on spectral domain watermarking and JPEG compression is described in the present paper. In a first step private areas are detected. Therefore a detection method is presented. The implemented method uses Haar cascades to detects faces. Integral images are used to speed up calculations and the detection. Multiple detections of one face are combined. Succeeding steps comprise embedding the data into the image as part of JPEG compression using spectral domain methods and protecting the area of privacy. The embedding process is integrated into and adapted to JPEG compression. A Spread Spectrum Watermarking method is used to embed the size and position of the private areas into the cover image. Different methods for embedding regarding their robustness are compared. Moreover the performance of the method concerning tampered images is presented.

  15. Adaptive Set-Based Methods for Association Testing

    PubMed Central

    Su, Yu-Chen; Gauderman, W. James; Kiros, Berhane; Lewinger, Juan Pablo

    2017-01-01

    With a typical sample size of a few thousand subjects, a single genomewide association study (GWAS) using traditional one-SNP-at-a-time methods can only detect genetic variants conferring a sizable effect on disease risk. Set-based methods, which analyze sets of SNPs jointly, can detect variants with smaller effects acting within a gene, a pathway, or other biologically relevant sets. While self-contained set-based methods (those that test sets of variants without regard to variants not in the set) are generally more powerful than competitive set-based approaches (those that rely on comparison of variants in the set of interest with variants not in the set), there is no consensus as to which self-contained methods are best. In particular, several self-contained set tests have been proposed to directly or indirectly ‘adapt’ to the a priori unknown proportion and distribution of effects of the truly associated SNPs in the set, which is a major determinant of their power. A popular adaptive set-based test is the adaptive rank truncated product (ARTP), which seeks the set of SNPs that yields the best-combined evidence of association. We compared the standard ARTP, several ARTP variations we introduced, and other adaptive methods in a comprehensive simulation study to evaluate their performance. We used permutations to assess significance for all the methods and thus provide a level playing field for comparison. We found the standard ARTP test to have the highest power across our simulations followed closely by the global model of random effects (GMRE) and a LASSO based test. PMID:26707371

  16. [Study of near infrared spectral preprocessing and wavelength selection methods for endometrial cancer tissue].

    PubMed

    Zhao, Li-Ting; Xiang, Yu-Hong; Dai, Yin-Mei; Zhang, Zhuo-Yong

    2010-04-01

    Near infrared spectroscopy was applied to measure the tissue slice of endometrial tissues for collecting the spectra. A total of 154 spectra were obtained from 154 samples. The number of normal, hyperplasia, and malignant samples was 36, 60, and 58, respectively. Original near infrared spectra are composed of many variables, for example, interference information including instrument errors and physical effects such as particle size and light scatter. In order to reduce these influences, original spectra data should be performed with different spectral preprocessing methods to compress variables and extract useful information. So the methods of spectral preprocessing and wavelength selection have played an important role in near infrared spectroscopy technique. In the present paper the raw spectra were processed using various preprocessing methods including first derivative, multiplication scatter correction, Savitzky-Golay first derivative algorithm, standard normal variate, smoothing, and moving-window median. Standard deviation was used to select the optimal spectral region of 4 000-6 000 cm(-1). Then principal component analysis was used for classification. Principal component analysis results showed that three types of samples could be discriminated completely and the accuracy almost achieved 100%. This study demonstrated that near infrared spectroscopy technology and chemometrics method could be a fast, efficient, and novel means to diagnose cancer. The proposed methods would be a promising and significant diagnosis technique of early stage cancer.

  17. Adaptive optimization of reference intensity for optical coherence imaging using galvanometric mirror tilting method

    NASA Astrophysics Data System (ADS)

    Kim, Ji-hyun; Han, Jae-Ho; Jeong, Jichai

    2015-09-01

    Integration time and reference intensity are important factors for achieving high signal-to-noise ratio (SNR) and sensitivity in optical coherence tomography (OCT). In this context, we present an adaptive optimization method of reference intensity for OCT setup. The reference intensity is automatically controlled by tilting a beam position using a Galvanometric scanning mirror system. Before sample scanning, the OCT system acquires two dimensional intensity map with normalized intensity and variables in color spaces using false-color mapping. Then, the system increases or decreases reference intensity following the map data for optimization with a given algorithm. In our experiments, the proposed method successfully corrected the reference intensity with maintaining spectral shape, enabled to change integration time without manual calibration of the reference intensity, and prevented image degradation due to over-saturation and insufficient reference intensity. Also, SNR and sensitivity could be improved by increasing integration time with automatic adjustment of the reference intensity. We believe that our findings can significantly aid in the optimization of SNR and sensitivity for optical coherence tomography systems.

  18. Cultural adaptation and translation of measures: an integrated method.

    PubMed

    Sidani, Souraya; Guruge, Sepali; Miranda, Joyal; Ford-Gilboe, Marilyn; Varcoe, Colleen

    2010-04-01

    Differences in the conceptualization and operationalization of health-related concepts may exist across cultures. Such differences underscore the importance of examining conceptual equivalence when adapting and translating instruments. In this article, we describe an integrated method for exploring conceptual equivalence within the process of adapting and translating measures. The integrated method involves five phases including selection of instruments for cultural adaptation and translation; assessment of conceptual equivalence, leading to the generation of a set of items deemed to be culturally and linguistically appropriate to assess the concept of interest in the target community; forward translation; back translation (optional); and pre-testing of the set of items. Strengths and limitations of the proposed integrated method are discussed. (c) 2010 Wiley Periodicals, Inc.

  19. Peripheral absolute threshold spectral sensitivity in retinitis pigmentosa.

    PubMed Central

    Massof, R W; Johnson, M A; Finkelstein, D

    1981-01-01

    Dark-adapted spectral sensitivities were measured in the peripheral retinas of 38 patients diagnosed as having typical retinitis pigmentosa (RP) and in 3 normal volunteers. The patients included those having autosomal dominant and autosomal recessive inheritance patterns. Results were analysed by comparisons with the CIE standard scotopic spectral visibility function and with Judd's modification of the photopic spectral visibility function, with consideration of contributions from changes in spectral transmission of preretinal media. The data show 3 general patterns. One group of patients had absolute threshold spectral sensitivities that were fit by Judd's photopic visibility curve. Absolute threshold spectral sensitivities for a second group of patients were fit by a normal scotopic spectral visibility curve. The third group of patients had absolute threshold spectral sensitivities that were fit by a combination of scotopic and photopic spectral visibility curves. The autosomal dominant and autosomal recessive modes of inheritance were represented in each group of patients. These data indicate that RP patients have normal rod and/or cone spectral sensitivities, and support the subclassification of patients described previously by Massof and Finkelstein. PMID:7459312

  20. Structure-preserving spectral element method in attenuating seismic wave modeling

    NASA Astrophysics Data System (ADS)

    Cai, Wenjun; Zhang, Huai

    2016-04-01

    This work describes the extension of the conformal symplectic method to solve the damped acoustic wave equation and the elastic wave equations in the framework of the spectral element method. The conformal symplectic method is a variation of conventional symplectic methods to treat non-conservative time evolution problems which has superior behaviors in long-time stability and dissipation preservation. To construct the conformal symplectic method, we first reformulate the damped acoustic wave equation and the elastic wave equations in their equivalent conformal multi-symplectic structures, which naturally reveal the intrinsic properties of the original systems, especially, the dissipation laws. We thereafter separate each structures into a conservative Hamiltonian system and a purely dissipative ordinary differential equation system. Based on the splitting methodology, we solve the two subsystems respectively. The dissipative one is cheaply solved by its analytic solution. While for the conservative system, we combine a fourth-order symplectic Nyström method in time and the spectral element method in space to cover the circumstances in realistic geological structures involving complex free-surface topography. The Strang composition method is adopted thereby to concatenate the corresponding two parts of solutions and generate the completed numerical scheme, which is conformal symplectic and can therefore guarantee the numerical stability and dissipation preservation after a large time modeling. Additionally, a relative larger Courant number than that of the traditional Newmark scheme is found in the numerical experiments in conjunction with a spatial sampling of approximately 5 points per wavelength. A benchmark test for the damped acoustic wave equation validates the effectiveness of our proposed method in precisely capturing dissipation rate. The classical Lamb problem is used to demonstrate the ability of modeling Rayleigh-wave propagation. More comprehensive

  1. Dual energy CT: How well can pseudo-monochromatic imaging reduce metal artifacts?

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kuchenbecker, Stefan, E-mail: stefan.kuchenbecker@dkfz.de; Faby, Sebastian; Sawall, Stefan

    2015-02-15

    Purpose: Dual Energy CT (DECT) provides so-called monoenergetic images based on a linear combination of the original polychromatic images. At certain patient-specific energy levels, corresponding to certain patient- and slice-dependent linear combination weights, e.g., E = 160 keV corresponds to α = 1.57, a significant reduction of metal artifacts may be observed. The authors aimed at analyzing the method for its artifact reduction capabilities to identify its limitations. The results are compared with raw data-based processing. Methods: Clinical DECT uses a simplified version of monochromatic imaging by linearly combining the low and the high kV images and by assigning an energymore » to that linear combination. Those pseudo-monochromatic images can be used by radiologists to obtain images with reduced metal artifacts. The authors analyzed the underlying physics and carried out a series expansion of the polychromatic attenuation equations. The resulting nonlinear terms are responsible for the artifacts, but they are not linearly related between the low and the high kV scan: A linear combination of both images cannot eliminate the nonlinearities, it can only reduce their impact. Scattered radiation yields additional noncanceling nonlinearities. This method is compared to raw data-based artifact correction methods. To quantify the artifact reduction potential of pseudo-monochromatic images, they simulated the FORBILD abdomen phantom with metal implants, and they assessed patient data sets of a clinical dual source CT system (100, 140 kV Sn) containing artifacts induced by a highly concentrated contrast agent bolus and by metal. In each case, they manually selected an optimal α and compared it to a raw data-based material decomposition in case of simulation, to raw data-based material decomposition of inconsistent rays in case of the patient data set containing contrast agent, and to the frequency split normalized metal artifact reduction in case of the

  2. Spectral-element Method for 3D Marine Controlled-source EM Modeling

    NASA Astrophysics Data System (ADS)

    Liu, L.; Yin, C.; Zhang, B., Sr.; Liu, Y.; Qiu, C.; Huang, X.; Zhu, J.

    2017-12-01

    As one of the predrill reservoir appraisal methods, marine controlled-source EM (MCSEM) has been widely used in mapping oil reservoirs to reduce risk of deep water exploration. With the technical development of MCSEM, the need for improved forward modeling tools has become evident. We introduce in this paper spectral element method (SEM) for 3D MCSEM modeling. It combines the flexibility of finite-element and high accuracy of spectral method. We use Galerkin weighted residual method to discretize the vector Helmholtz equation, where the curl-conforming Gauss-Lobatto-Chebyshev (GLC) polynomials are chosen as vector basis functions. As a kind of high-order complete orthogonal polynomials, the GLC have the characteristic of exponential convergence. This helps derive the matrix elements analytically and improves the modeling accuracy. Numerical 1D models using SEM with different orders show that SEM method delivers accurate results. With increasing SEM orders, the modeling accuracy improves largely. Further we compare our SEM with finite-difference (FD) method for a 3D reservoir model (Figure 1). The results show that SEM method is more effective than FD method. Only when the mesh is fine enough, can FD achieve the same accuracy of SEM. Therefore, to obtain the same precision, SEM greatly reduces the degrees of freedom and cost. Numerical experiments with different models (not shown here) demonstrate that SEM is an efficient and effective tool for MSCEM modeling that has significant advantages over traditional numerical methods.This research is supported by Key Program of National Natural Science Foundation of China (41530320), China Natural Science Foundation for Young Scientists (41404093), and Key National Research Project of China (2016YFC0303100, 2017YFC0601900).

  3. A New Method to Cancel RFI---The Adaptive Filter

    NASA Astrophysics Data System (ADS)

    Bradley, R.; Barnbaum, C.

    1996-12-01

    An increasing amount of precious radio frequency spectrum in the VHF, UHF, and microwave bands is being utilized each year to support new commercial and military ventures, and all have the potential to interfere with radio astronomy observations. Some radio spectral lines of astronomical interest occur outside the protected radio astronomy bands and are unobservable due to heavy interference. Conventional approaches to deal with RFI include legislation, notch filters, RF shielding, and post-processing techniques. Although these techniques are somewhat successful, each suffers from insufficient interference cancellation. One concept of interference excision that has not been used before in radio astronomy is adaptive interference cancellation. The concept of adaptive interference canceling was first introduced in the mid-1970s as a way to reduce unwanted noise in low frequency (audio) systems. Examples of such systems include the canceling of maternal ECG in fetal electrocardiography and the reduction of engine noise in the passenger compartment of automobiles. Only recently have high-speed digital filter chips made adaptive filtering possible in a bandwidth as large a few megahertz, finally opening the door to astronomical uses. The system consists of two receivers: the main beam of the radio telescope receives the desired signal corrupted by RFI coming in the sidelobes, and the reference antenna receives only the RFI. The reference antenna is processed using a digital adaptive filter and then subtracted from the signal in the main beam, thus producing the system output. The weights of the digital filter are adjusted by way of an algorithm that minimizes, in a least-squares sense, the power output of the system. Through an adaptive-iterative process, the interference canceler will lock onto the RFI and the filter will adjust itself to minimize the effect of the RFI at the system output. We are building a prototype 100 MHz receiver and will measure the cancellation

  4. Multichannel Speech Enhancement Based on Generalized Gamma Prior Distribution with Its Online Adaptive Estimation

    NASA Astrophysics Data System (ADS)

    Dat, Tran Huy; Takeda, Kazuya; Itakura, Fumitada

    We present a multichannel speech enhancement method based on MAP speech spectral magnitude estimation using a generalized gamma model of speech prior distribution, where the model parameters are adapted from actual noisy speech in a frame-by-frame manner. The utilization of a more general prior distribution with its online adaptive estimation is shown to be effective for speech spectral estimation in noisy environments. Furthermore, the multi-channel information in terms of cross-channel statistics are shown to be useful to better adapt the prior distribution parameters to the actual observation, resulting in better performance of speech enhancement algorithm. We tested the proposed algorithm in an in-car speech database and obtained significant improvements of the speech recognition performance, particularly under non-stationary noise conditions such as music, air-conditioner and open window.

  5. Spectral methods in general relativity and large Randall-Sundrum II black holes

    NASA Astrophysics Data System (ADS)

    Abdolrahimi, Shohreh; Cattoën, Céline; Page, Don N.; \\\\; Yaghoobpour-Tari, Shima

    2013-06-01

    Using a novel numerical spectral method, we have found solutions for large static Randall-Sundrum II (RSII) black holes by perturbing a numerical AdS5-CFT4 solution to the Einstein equation with a negative cosmological constant Λ that is asymptotically conformal to the Schwarzschild metric. We used a numerical spectral method independent of the Ricci-DeTurck-flow method used by Figueras, Lucietti, and Wiseman for a similar numerical solution. We have compared our black-hole solution to the one Figueras and Wiseman have derived by perturbing their numerical AdS5-CFT4 solution, showing that our solution agrees closely with theirs. We have obtained a closed-form approximation to the metric of the black hole on the brane. We have also deduced the new results that to first order in 1/(-ΛM2), the Hawking temperature and entropy of an RSII static black hole have the same values as the Schwarzschild metric with the same mass, but the horizon area is increased by about 4.7/(-Λ).

  6. Application of Bounded Linear Stability Analysis Method for Metrics-Driven Adaptive Control

    NASA Technical Reports Server (NTRS)

    Bakhtiari-Nejad, Maryam; Nguyen, Nhan T.; Krishnakumar, Kalmanje

    2009-01-01

    This paper presents the application of Bounded Linear Stability Analysis (BLSA) method for metrics-driven adaptive control. The bounded linear stability analysis method is used for analyzing stability of adaptive control models, without linearizing the adaptive laws. Metrics-driven adaptive control introduces a notion that adaptation should be driven by some stability metrics to achieve robustness. By the application of bounded linear stability analysis method the adaptive gain is adjusted during the adaptation in order to meet certain phase margin requirements. Analysis of metrics-driven adaptive control is evaluated for a second order system that represents a pitch attitude control of a generic transport aircraft. The analysis shows that the system with the metrics-conforming variable adaptive gain becomes more robust to unmodeled dynamics or time delay. The effect of analysis time-window for BLSA is also evaluated in order to meet the stability margin criteria.

  7. Developing the Effective Method of Spectral Harmonic Energy Ratio to Analyze the Arterial Pulse Spectrum

    PubMed Central

    Huang, Chin-Ming; Wei, Ching-Chuan; Liao, Yin-Tzu; Chang, Hsien-Cheh; Kao, Shung-Te; Li, Tsai-Chung

    2011-01-01

    In this article, we analyze the arterial pulse in the spectral domain. A parameter, the spectral harmonic energy ratio (SHER), is developed to assess the features of the overly decreased spectral energy in the fourth to sixth harmonic for palpitation patients. Compared with normal subjects, the statistical results reveal that the mean value of SHER in the patient group (57.7 ± 27.9) is significantly higher than that of the normal group (39.7 ± 20.9) (P-value = .0066 < .01). This means that the total energy in the fourth to sixth harmonic of palpitation patients is significantly less than it is in normal subjects. In other words, the spectral distribution of the arterial pulse gradually decreases for normal subjects while it decreases abruptly in higher-order harmonics (the fourth, fifth and sixth harmonics) for palpitation patients. Hence, SHER is an effective method to distinguish the two groups in the spectral domain. Also, we can thus know that a “gradual decrease” might mean a “balanced” state, whereas an “abrupt decrease” might mean an “unbalanced” state in blood circulation and pulse diagnosis. By SHER, we can determine the ratio of energy distribution in different harmonic bands, and this method gives us a novel viewpoint from which to comprehend and quantify the spectral harmonic distribution of circulation information conveyed by the arterial pulse. These concepts can be further applied to improve the clinical diagnosis not only in Western medicine but also in traditional Chinese medicine (TCM). PMID:21845200

  8. Overdetermined shooting methods for computing standing water waves with spectral accuracy

    NASA Astrophysics Data System (ADS)

    Wilkening, Jon; Yu, Jia

    2012-01-01

    A high-performance shooting algorithm is developed to compute time-periodic solutions of the free-surface Euler equations with spectral accuracy in double and quadruple precision. The method is used to study resonance and its effect on standing water waves. We identify new nucleation mechanisms in which isolated large-amplitude solutions, and closed loops of such solutions, suddenly exist for depths below a critical threshold. We also study degenerate and secondary bifurcations related to Wilton's ripples in the traveling case, and explore the breakdown of self-similarity at the crests of extreme standing waves. In shallow water, we find that standing waves take the form of counter-propagating solitary waves that repeatedly collide quasi-elastically. In deep water with surface tension, we find that standing waves resemble counter-propagating depression waves. We also discuss the existence and non-uniqueness of solutions, and smooth versus erratic dependence of Fourier modes on wave amplitude and fluid depth. In the numerical method, robustness is achieved by posing the problem as an overdetermined nonlinear system and using either adjoint-based minimization techniques or a quadratically convergent trust-region method to minimize the objective function. Efficiency is achieved in the trust-region approach by parallelizing the Jacobian computation, so the setup cost of computing the Dirichlet-to-Neumann operator in the variational equation is not repeated for each column. Updates of the Jacobian are also delayed until the previous Jacobian ceases to be useful. Accuracy is maintained using spectral collocation with optional mesh refinement in space, a high-order Runge-Kutta or spectral deferred correction method in time and quadruple precision for improved navigation of delicate regions of parameter space as well as validation of double-precision results. Implementation issues for transferring much of the computation to a graphic processing units are briefly discussed

  9. A pseudo-haptic knot diagram interface

    NASA Astrophysics Data System (ADS)

    Zhang, Hui; Weng, Jianguang; Hanson, Andrew J.

    2011-01-01

    To make progress in understanding knot theory, we will need to interact with the projected representations of mathematical knots which are of course continuous in 3D but significantly interrupted in the projective images. One way to achieve such a goal would be to design an interactive system that allows us to sketch 2D knot diagrams by taking advantage of a collision-sensing controller and explore their underlying smooth structures through a continuous motion. Recent advances of interaction techniques have been made that allow progress to be made in this direction. Pseudo-haptics that simulates haptic effects using pure visual feedback can be used to develop such an interactive system. This paper outlines one such pseudo-haptic knot diagram interface. Our interface derives from the familiar pencil-and-paper process of drawing 2D knot diagrams and provides haptic-like sensations to facilitate the creation and exploration of knot diagrams. A centerpiece of the interaction model simulates a "physically" reactive mouse cursor, which is exploited to resolve the apparent conflict between the continuous structure of the actual smooth knot and the visual discontinuities in the knot diagram representation. Another value in exploiting pseudo-haptics is that an acceleration (or deceleration) of the mouse cursor (or surface locator) can be used to indicate the slope of the curve (or surface) of whom the projective image is being explored. By exploiting these additional visual cues, we proceed to a full-featured extension to a pseudo-haptic 4D visualization system that simulates the continuous navigation on 4D objects and allows us to sense the bumps and holes in the fourth dimension. Preliminary tests of the software show that main features of the interface overcome some expected perceptual limitations in our interaction with 2D knot diagrams of 3D knots and 3D projective images of 4D mathematical objects.

  10. Moving and adaptive grid methods for compressible flows

    NASA Technical Reports Server (NTRS)

    Trepanier, Jean-Yves; Camarero, Ricardo

    1995-01-01

    This paper describes adaptive grid methods developed specifically for compressible flow computations. The basic flow solver is a finite-volume implementation of Roe's flux difference splitting scheme or arbitrarily moving unstructured triangular meshes. The grid adaptation is performed according to geometric and flow requirements. Some results are included to illustrate the potential of the methodology.

  11. Adaptive Discontinuous Galerkin Methods in Multiwavelets Bases

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Archibald, Richard K; Fann, George I; Shelton Jr, William Allison

    2011-01-01

    We use a multiwavelet basis with the Discontinuous Galerkin (DG) method to produce a multi-scale DG method. We apply this Multiwavelet DG method to convection and convection-diffusion problems in multiple dimensions. Merging the DG method with multiwavelets allows the adaptivity in the DG method to be resolved through manipulation of multiwavelet coefficients rather than grid manipulation. Additionally, the Multiwavelet DG method is tested on non-linear equations in one dimension and on the cubed sphere.

  12. Iterative spectral methods and spectral solutions to compressible flows

    NASA Technical Reports Server (NTRS)

    Hussaini, M. Y.; Zang, T. A.

    1982-01-01

    A spectral multigrid scheme is described which can solve pseudospectral discretizations of self-adjoint elliptic problems in O(N log N) operations. An iterative technique for efficiently implementing semi-implicit time-stepping for pseudospectral discretizations of Navier-Stokes equations is discussed. This approach can handle variable coefficient terms in an effective manner. Pseudospectral solutions of compressible flow problems are presented. These include one dimensional problems and two dimensional Euler solutions. Results are given both for shock-capturing approaches and for shock-fitting ones.

  13. Comparing Anisotropic Output-Based Grid Adaptation Methods by Decomposition

    NASA Technical Reports Server (NTRS)

    Park, Michael A.; Loseille, Adrien; Krakos, Joshua A.; Michal, Todd

    2015-01-01

    Anisotropic grid adaptation is examined by decomposing the steps of flow solution, ad- joint solution, error estimation, metric construction, and simplex grid adaptation. Multiple implementations of each of these steps are evaluated by comparison to each other and expected analytic results when available. For example, grids are adapted to analytic metric fields and grid measures are computed to illustrate the properties of multiple independent implementations of grid adaptation mechanics. Different implementations of each step in the adaptation process can be evaluated in a system where the other components of the adaptive cycle are fixed. Detailed examination of these properties allows comparison of different methods to identify the current state of the art and where further development should be targeted.

  14. An adaptable parallel algorithm for the direct numerical simulation of incompressible turbulent flows using a Fourier spectral/hp element method and MPI virtual topologies

    NASA Astrophysics Data System (ADS)

    Bolis, A.; Cantwell, C. D.; Moxey, D.; Serson, D.; Sherwin, S. J.

    2016-09-01

    A hybrid parallelisation technique for distributed memory systems is investigated for a coupled Fourier-spectral/hp element discretisation of domains characterised by geometric homogeneity in one or more directions. The performance of the approach is mathematically modelled in terms of operation count and communication costs for identifying the most efficient parameter choices. The model is calibrated to target a specific hardware platform after which it is shown to accurately predict the performance in the hybrid regime. The method is applied to modelling turbulent flow using the incompressible Navier-Stokes equations in an axisymmetric pipe and square channel. The hybrid method extends the practical limitations of the discretisation, allowing greater parallelism and reduced wall times. Performance is shown to continue to scale when both parallelisation strategies are used.

  15. Preliminary assessment of several parameters to measure and compare usefulness of the CEOS reference pseudo-invariant calibration sites

    USGS Publications Warehouse

    Chander, Gyanesh; Angal, Amit; Xiong, Xiaoxiong; Helder, Dennis L.; Mishra, Nischal; Choi, Taeyoung; Wu, Aisheng

    2010-01-01

    Test sites are central to any future quality assurance and quality control (QA/QC) strategy. The Committee on Earth Observation Satellites (CEOS) Working Group for Calibration and Validation (WGCV) Infrared Visible Optical Sensors (IVOS) worked with collaborators around the world to establish a core set of CEOS-endorsed, globally distributed, reference standard test sites (both instrumented and pseudo-invariant) for the post-launch calibration of space-based optical imaging sensors. The pseudo-invariant calibration sites (PICS) have high reflectance and are usually made up of sand dunes with low aerosol loading and practically no vegetation. The goal of this paper is to provide preliminary assessment of "several parameters" than can be used on an operational basis to compare and measure usefulness of reference sites all over the world. The data from Landsat 7 (L7) Enhanced Thematic Mapper Plus (ETM+) and the Earth Observing-1 (EO-1) Hyperion sensors over the CEOS PICS were used to perform a preliminary assessment of several parameters, such as usable area, data availability, top-of-atmosphere (TOA) reflectance, at-sensor brightness temperature, spatial uniformity, temporal stability, spectral stability, and typical spectrum observed over the sites.

  16. Investigation of the Multiple Method Adaptive Control (MMAC) method for flight control systems

    NASA Technical Reports Server (NTRS)

    Athans, M.; Baram, Y.; Castanon, D.; Dunn, K. P.; Green, C. S.; Lee, W. H.; Sandell, N. R., Jr.; Willsky, A. S.

    1979-01-01

    The stochastic adaptive control of the NASA F-8C digital-fly-by-wire aircraft using the multiple model adaptive control (MMAC) method is presented. The selection of the performance criteria for the lateral and the longitudinal dynamics, the design of the Kalman filters for different operating conditions, the identification algorithm associated with the MMAC method, the control system design, and simulation results obtained using the real time simulator of the F-8 aircraft at the NASA Langley Research Center are discussed.

  17. Onboard spectral imager data processor

    NASA Astrophysics Data System (ADS)

    Otten, Leonard J.; Meigs, Andrew D.; Franklin, Abraham J.; Sears, Robert D.; Robison, Mark W.; Rafert, J. Bruce; Fronterhouse, Donald C.; Grotbeck, Ronald L.

    1999-10-01

    Previous papers have described the concept behind the MightySat II.1 program, the satellite's Fourier Transform imaging spectrometer's optical design, the design for the spectral imaging payload, and its initial qualification testing. This paper discusses the on board data processing designed to reduce the amount of downloaded data by an order of magnitude and provide a demonstration of a smart spaceborne spectral imaging sensor. Two custom components, a spectral imager interface 6U VME card that moves data at over 30 MByte/sec, and four TI C-40 processors mounted to a second 6U VME and daughter card, are used to adapt the sensor to the spacecraft and provide the necessary high speed processing. A system architecture that offers both on board real time image processing and high-speed post data collection analysis of the spectral data has been developed. In addition to the on board processing of the raw data into a usable spectral data volume, one feature extraction technique has been incorporated. This algorithm operates on the basic interferometric data. The algorithm is integrated within the data compression process to search for uploadable feature descriptions.

  18. Implementing informative priors for heterogeneity in meta-analysis using meta-regression and pseudo data.

    PubMed

    Rhodes, Kirsty M; Turner, Rebecca M; White, Ian R; Jackson, Dan; Spiegelhalter, David J; Higgins, Julian P T

    2016-12-20

    Many meta-analyses combine results from only a small number of studies, a situation in which the between-study variance is imprecisely estimated when standard methods are applied. Bayesian meta-analysis allows incorporation of external evidence on heterogeneity, providing the potential for more robust inference on the effect size of interest. We present a method for performing Bayesian meta-analysis using data augmentation, in which we represent an informative conjugate prior for between-study variance by pseudo data and use meta-regression for estimation. To assist in this, we derive predictive inverse-gamma distributions for the between-study variance expected in future meta-analyses. These may serve as priors for heterogeneity in new meta-analyses. In a simulation study, we compare approximate Bayesian methods using meta-regression and pseudo data against fully Bayesian approaches based on importance sampling techniques and Markov chain Monte Carlo (MCMC). We compare the frequentist properties of these Bayesian methods with those of the commonly used frequentist DerSimonian and Laird procedure. The method is implemented in standard statistical software and provides a less complex alternative to standard MCMC approaches. An importance sampling approach produces almost identical results to standard MCMC approaches, and results obtained through meta-regression and pseudo data are very similar. On average, data augmentation provides closer results to MCMC, if implemented using restricted maximum likelihood estimation rather than DerSimonian and Laird or maximum likelihood estimation. The methods are applied to real datasets, and an extension to network meta-analysis is described. The proposed method facilitates Bayesian meta-analysis in a way that is accessible to applied researchers. © 2016 The Authors. Statistics in Medicine Published by John Wiley & Sons Ltd. © 2016 The Authors. Statistics in Medicine Published by John Wiley & Sons Ltd.

  19. Feasibility of the adaptive and automatic presentation of tasks (ADAPT) system for rehabilitation of upper extremity function post-stroke

    PubMed Central

    2011-01-01

    Background Current guidelines for rehabilitation of arm and hand function after stroke recommend that motor training focus on realistic tasks that require reaching and manipulation and engage the patient intensively, actively, and adaptively. Here, we investigated the feasibility of a novel robotic task-practice system, ADAPT, designed in accordance with such guidelines. At each trial, ADAPT selects a functional task according to a training schedule and with difficulty based on previous performance. Once the task is selected, the robot picks up and presents the corresponding tool, simulates the dynamics of the tasks, and the patient interacts with the tool to perform the task. Methods Five participants with chronic stroke with mild to moderate impairments (> 9 months post-stroke; Fugl-Meyer arm score 49.2 ± 5.6) practiced four functional tasks (selected out of six in a pre-test) with ADAPT for about one and half hour and 144 trials in a pseudo-random schedule of 3-trial blocks per task. Results No adverse events occurred and ADAPT successfully presented the six functional tasks without human intervention for a total of 900 trials. Qualitative analysis of trajectories showed that ADAPT simulated the desired task dynamics adequately, and participants reported good, although not excellent, task fidelity. During training, the adaptive difficulty algorithm progressively increased task difficulty leading towards an optimal challenge point based on performance; difficulty was then continuously adjusted to keep performance around the challenge point. Furthermore, the time to complete all trained tasks decreased significantly from pretest to one-hour post-test. Finally, post-training questionnaires demonstrated positive patient acceptance of ADAPT. Conclusions ADAPT successfully provided adaptive progressive training for multiple functional tasks based on participant's performance. Our encouraging results establish the feasibility of ADAPT; its efficacy will next be tested

  20. The Application of Deterministic Spectral Domain Method to the Analysis of Planar Circuit Discontinuities on Open Substrates

    DTIC Science & Technology

    1990-08-01

    the spectral domain is extended to include the effects of two-dimensional, two-component current flow in planar transmission line discontinuities 6n...PROFESSOR: Tatsuo Itoh A deterministic formulation of the method of moments carried out in the spectral domain is extended to include the effects of...two-dimensional, two- component current flow in planar transmission line discontinuities on open substrates. The method includes the effects of space

  1. [A cloud detection algorithm for MODIS images combining Kmeans clustering and multi-spectral threshold method].

    PubMed

    Wang, Wei; Song, Wei-Guo; Liu, Shi-Xing; Zhang, Yong-Ming; Zheng, Hong-Yang; Tian, Wei

    2011-04-01

    An improved method for detecting cloud combining Kmeans clustering and the multi-spectral threshold approach is described. On the basis of landmark spectrum analysis, MODIS data is categorized into two major types initially by Kmeans method. The first class includes clouds, smoke and snow, and the second class includes vegetation, water and land. Then a multi-spectral threshold detection is applied to eliminate interference such as smoke and snow for the first class. The method is tested with MODIS data at different time under different underlying surface conditions. By visual method to test the performance of the algorithm, it was found that the algorithm can effectively detect smaller area of cloud pixels and exclude the interference of underlying surface, which provides a good foundation for the next fire detection approach.

  2. Fast adaptive composite grid methods on distributed parallel architectures

    NASA Technical Reports Server (NTRS)

    Lemke, Max; Quinlan, Daniel

    1992-01-01

    The fast adaptive composite (FAC) grid method is compared with the adaptive composite method (AFAC) under variety of conditions including vectorization and parallelization. Results are given for distributed memory multiprocessor architectures (SUPRENUM, Intel iPSC/2 and iPSC/860). It is shown that the good performance of AFAC and its superiority over FAC in a parallel environment is a property of the algorithm and not dependent on peculiarities of any machine.

  3. Positron collisions with acetylene calculated using the R-matrix with pseudo-states method

    NASA Astrophysics Data System (ADS)

    Zhang, Rui; Galiatsatos, Pavlos G.; Tennyson, Jonathan

    2011-10-01

    Eigenphase sums, total cross sections and differential cross sections are calculated for low-energy collisions of positrons with C2H2. The calculations demonstrate that the use of appropriate pseudo-state expansions very significantly improves the representation of this process giving both realistic eigenphases and cross sections. Differential cross sections are strongly forward peaked in agreement with the measurements. These calculations are computationally very demanding; even with improved procedures for matrix diagonalization, fully converged calculations are too expensive with current computer resources. Nonetheless, the calculations show clear evidence for the formation of a virtual state but no indication that acetylene actually binds a positron at its equilibrium geometry.

  4. Spectral Learning for Supervised Topic Models.

    PubMed

    Ren, Yong; Wang, Yining; Zhu, Jun

    2018-03-01

    Supervised topic models simultaneously model the latent topic structure of large collections of documents and a response variable associated with each document. Existing inference methods are based on variational approximation or Monte Carlo sampling, which often suffers from the local minimum defect. Spectral methods have been applied to learn unsupervised topic models, such as latent Dirichlet allocation (LDA), with provable guarantees. This paper investigates the possibility of applying spectral methods to recover the parameters of supervised LDA (sLDA). We first present a two-stage spectral method, which recovers the parameters of LDA followed by a power update method to recover the regression model parameters. Then, we further present a single-phase spectral algorithm to jointly recover the topic distribution matrix as well as the regression weights. Our spectral algorithms are provably correct and computationally efficient. We prove a sample complexity bound for each algorithm and subsequently derive a sufficient condition for the identifiability of sLDA. Thorough experiments on synthetic and real-world datasets verify the theory and demonstrate the practical effectiveness of the spectral algorithms. In fact, our results on a large-scale review rating dataset demonstrate that our single-phase spectral algorithm alone gets comparable or even better performance than state-of-the-art methods, while previous work on spectral methods has rarely reported such promising performance.

  5. Pseudo-thermosetting chitosan hydrogels for biomedical application.

    PubMed

    Berger, J; Reist, M; Chenite, A; Felt-Baeyens, O; Mayer, J M; Gurny, R

    2005-01-20

    To prepare transparent chitosan/beta-glycerophosphate (betaGP) pseudo-thermosetting hydrogels, the deacetylation degree (DD) of chitosan has been modified by reacetylation with acetic anhydride. Two methods (I and II) of reacetylation have been compared and have shown that the use of previously filtered chitosan, dilution of acetic anhydride and reduction of temperature in method II improves efficiency and reproducibility. Chitosans with DD ranging from 35.0 to 83.2% have been prepared according to method II under homogeneous and non-homogeneous reacetylation conditions and the turbidity of chitosan/betaGP hydrogels containing homogeneously or non-homogeneously reacetylated chitosan has been investigated. Turbidity is shown to be modulated by the DD of chitosan and by the homogeneity of the medium during reacetylation, which influences the distribution mode of the chitosan monomers. The preparation of transparent chitosan/betaGP hydrogels requires a homogeneously reacetylated chitosan with a DD between 35 and 50%.

  6. Pseudo-thermosetting chitosan hydrogels for biomedical application.

    PubMed

    Berger, J; Reist, M; Chenite, A; Felt-Baeyens, O; Mayer, J M; Gurny, R

    2005-01-06

    To prepare transparent chitosan/beta-glycerophosphate (betaGP) pseudo-thermosetting hydrogels, the deacetylation degree (DD) of chitosan has been modified by reacetylation with acetic anhydride. Two methods (I and II) of reacetylation have been compared and have shown that the use of previously filtered chitosan, dilution of acetic anhydride and reduction of temperature in method II improves efficiency and reproducibility. Chitosans with DD ranging from 35.0 to 83.2% have been prepared according to method II under homogeneous and non-homogeneous reacetylation conditions and the turbidity of chitosan/betaGP hydrogels containing homogeneously or non-homogeneously reacetylated chitosan has been investigated. Turbidity is shown to be modulated by the DD of chitosan and by the homogeneity of the medium during reacetylation, which influences the distribution mode of the chitosan monomers. The preparation of transparent chitosan/betaGP hydrogels requires a homogeneously reacetylated chitosan with a DD between 35 and 50%.

  7. GENOME ENABLED ECOLOGY OF PSEUDO-NITZSCHIA INFECTING VIRUSES AND THEIR IMPACT ON PSEUDO-NITZSCHIA COMMUNITIES

    EPA Science Inventory

    With short infection cycles and large burst sizes (viruses per cell), the infection dynamics of diatom viruses appear to be optimized for rapidly growing diatom populations. On the timescale of bloom events, total Pseudo-nitzschia virus abundance should increase rapidly ove...

  8. [Elaboration of Pseudo-natural Products Using Artificial In Vitro Biosynthesis Systems].

    PubMed

    Goto, Yuki

    2018-01-01

     Peptidic natural products often consist of not only proteinogenic building blocks but also unique non-proteinogenic structures such as macrocyclic scaffolds and N-methylated backbones. Since such non-proteinogenic structures are important structural motifs that contribute to diverse bioactivity, we have proposed that peptides with non-proteinogenic structures should be attractive candidates as artificial bioactive peptides mimicking natural products, or so-called pseudo-natural products. We previously devised an engineered translation system for pseudo-natural peptides, referred to as the flexible in vitro translation (FIT) system. This system enabled "one-pot" synthesis of highly diverse pseudo-natural peptide libraries, which can be rapidly screened by mRNA display technology for the discovery of pseudo-natural peptides with diverse bioactivities.

  9. Tetrahedral cluster and pseudo molecule: New approaches to Calculate Absolute Surface Energy of Zinc Blende (111)/(-1-1-1) Surface

    NASA Astrophysics Data System (ADS)

    Zhang, Yiou; Zhang, Jingzhao; Tse, Kinfai; Wong, Lun; Chan, Chunkai; Deng, Bei; Zhu, Junyi

    Determining accurate absolute surface energies for polar surfaces of semiconductors has been a great challenge in decades. Here, we propose pseudo-hydrogen passivation to calculate them, using density functional theory approaches. By calculating the energy contribution from pseudo-hydrogen using either a pseudo molecule method or a tetrahedral cluster method, we obtained (111)/(-1-1-1) surfaces energies of Si, GaP, GaAs, and ZnS with high self-consistency. Our findings may greatly enhance the basic understandings of different surfaces and lead to novel strategies in the crystal growth. We would like to thank Su-huai Wei for helpful discussions. Computing resources were provided by the High Performance Cluster Computing Centre, Hong Kong Baptist University. This work was supported by the start-up funding and direct Grant with the Project.

  10. A Pseudo-Vertical Equilibrium Model for Slow Gravity Drainage Dynamics

    NASA Astrophysics Data System (ADS)

    Becker, Beatrix; Guo, Bo; Bandilla, Karl; Celia, Michael A.; Flemisch, Bernd; Helmig, Rainer

    2017-12-01

    Vertical equilibrium (VE) models are computationally efficient and have been widely used for modeling fluid migration in the subsurface. However, they rely on the assumption of instant gravity segregation of the two fluid phases which may not be valid especially for systems that have very slow drainage at low wetting phase saturations. In these cases, the time scale for the wetting phase to reach vertical equilibrium can be several orders of magnitude larger than the time scale of interest, rendering conventional VE models unsuitable. Here we present a pseudo-VE model that relaxes the assumption of instant segregation of the two fluid phases by applying a pseudo-residual saturation inside the plume of the injected fluid that declines over time due to slow vertical drainage. This pseudo-VE model is cast in a multiscale framework for vertically integrated models with the vertical drainage solved as a fine-scale problem. Two types of fine-scale models are developed for the vertical drainage, which lead to two pseudo-VE models. Comparisons with a conventional VE model and a full multidimensional model show that the pseudo-VE models have much wider applicability than the conventional VE model while maintaining the computational benefit of the conventional VE model.

  11. Fast analytical spectral filtering methods for magnetic resonance perfusion quantification.

    PubMed

    Reddy, Kasireddy V; Mitra, Abhishek; Yalavarthy, Phaneendra K

    2016-08-01

    The deconvolution in the perfusion weighted imaging (PWI) plays an important role in quantifying the MR perfusion parameters. The PWI application to stroke and brain tumor studies has become a standard clinical practice. The standard approach for this deconvolution is oscillatory-limited singular value decomposition (oSVD) and frequency domain deconvolution (FDD). The FDD is widely recognized as the fastest approach currently available for deconvolution of MR perfusion data. In this work, two fast deconvolution methods (namely analytical fourier filtering and analytical showalter spectral filtering) are proposed. Through systematic evaluation, the proposed methods are shown to be computationally efficient and quantitatively accurate compared to FDD and oSVD.

  12. Projected changes over western Canada using convection-permitting regional climate model and the pseudo-global warming method

    NASA Astrophysics Data System (ADS)

    Li, Y.; Kurkute, S.; Chen, L.

    2017-12-01

    Results from the General Circulation Models (GCMs) suggest more frequent and more severe extreme rain events in a climate warmer than the present. However, current GCMs cannot accurately simulate extreme rainfall events of short duration due to their coarse model resolutions and parameterizations. This limitation makes it difficult to provide the detailed quantitative information for the development of regional adaptation and mitigation strategies. Dynamical downscaling using nested Regional Climate Models (RCMs) are able to capture key regional and local climate processes with an affordable computational cost. Recent studies have demonstrated that the downscaling of GCM results with weather-permitting mesoscale models, such as the pseudo-global warming (PGW) technique, could be a viable and economical approach of obtaining valuable climate change information on regional scales. We have conducted a regional climate 4-km Weather Research and Forecast Model (WRF) simulation with one domain covering the whole western Canada, for a historic run (2000-2015) and a 15-year future run to 2100 and beyond with the PGW forcing. The 4-km resolution allows direct use of microphysics and resolves the convection explicitly, thus providing very convincing spatial detail. With this high-resolution simulation, we are able to study the convective mechanisms, specifically the control of convections over the Prairies, the projected changes of rainfall regimes, and the shift of the convective mechanisms in a warming climate, which has never been examined before numerically at such large scale with such high resolution.

  13. Accurate, efficient, and (iso)geometrically flexible collocation methods for phase-field models

    NASA Astrophysics Data System (ADS)

    Gomez, Hector; Reali, Alessandro; Sangalli, Giancarlo

    2014-04-01

    We propose new collocation methods for phase-field models. Our algorithms are based on isogeometric analysis, a new technology that makes use of functions from computational geometry, such as, for example, Non-Uniform Rational B-Splines (NURBS). NURBS exhibit excellent approximability and controllable global smoothness, and can represent exactly most geometries encapsulated in Computer Aided Design (CAD) models. These attributes permitted us to derive accurate, efficient, and geometrically flexible collocation methods for phase-field models. The performance of our method is demonstrated by several numerical examples of phase separation modeled by the Cahn-Hilliard equation. We feel that our method successfully combines the geometrical flexibility of finite elements with the accuracy and simplicity of pseudo-spectral collocation methods, and is a viable alternative to classical collocation methods.

  14. Color reproduction of human skin by spectral reflectance using RGB images and the Wiener estimation method

    NASA Astrophysics Data System (ADS)

    Sato, Kiyomi; Miyazawa, Shota; Funamizu, Hideki; Yuasa, Tomonori; Nishidate, Izumi; Aizu, Yoshihisa

    2017-04-01

    Skin measurements based on spectral reflectance are widely studied in the fields of medical care and cosmetics. It has the advantage that several skin properties can be estimated in the non-invasive and non-contacting manner. In this study, we demonstrate the color reproduction of human skin by spectral reflectance using RGB images and the Wiener estimation method.

  15. Adaptive Nodal Transport Methods for Reactor Transient Analysis

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Thomas Downar; E. Lewis

    2005-08-31

    Develop methods for adaptively treating the angular, spatial, and time dependence of the neutron flux in reactor transient analysis. These methods were demonstrated in the DOE transport nodal code VARIANT and the US NRC spatial kinetics code, PARCS.

  16. Discontinuous Spectral Difference Method for Conservation Laws on Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Liu, Yen; Vinokur, Marcel

    2004-01-01

    A new, high-order, conservative, and efficient discontinuous spectral finite difference (SD) method for conservation laws on unstructured grids is developed. The concept of discontinuous and high-order local representations to achieve conservation and high accuracy is utilized in a manner similar to the Discontinuous Galerkin (DG) and the Spectral Volume (SV) methods, but while these methods are based on the integrated forms of the equations, the new method is based on the differential form to attain a simpler formulation and higher efficiency. Conventional unstructured finite-difference and finite-volume methods require data reconstruction based on the least-squares formulation using neighboring point or cell data. Since each unknown employs a different stencil, one must repeat the least-squares inversion for every point or cell at each time step, or to store the inversion coefficients. In a high-order, three-dimensional computation, the former would involve impractically large CPU time, while for the latter the memory requirement becomes prohibitive. In addition, the finite-difference method does not satisfy the integral conservation in general. By contrast, the DG and SV methods employ a local, universal reconstruction of a given order of accuracy in each cell in terms of internally defined conservative unknowns. Since the solution is discontinuous across cell boundaries, a Riemann solver is necessary to evaluate boundary flux terms and maintain conservation. In the DG method, a Galerkin finite-element method is employed to update the nodal unknowns within each cell. This requires the inversion of a mass matrix, and the use of quadratures of twice the order of accuracy of the reconstruction to evaluate the surface integrals and additional volume integrals for nonlinear flux functions. In the SV method, the integral conservation law is used to update volume averages over subcells defined by a geometrically similar partition of each grid cell. As the order of

  17. Periodic Orbits Contribution to the 2-Point Correlation Form Factor for Pseudo-Integrable Systems

    NASA Astrophysics Data System (ADS)

    Bogomolny, E.; Giraud, O.; Schmit, C.

    Using heuristic arguments based on the trace formulas we relate the 2-point correlation form factor, K2(τ), at small values of τ with sums over classical periodic orbits for typical examples of pseudo-integrable systems. The later sums have been explicitly calculated for the following models: (i) plane billiards in the form of right triangles with one angle π/n and (ii) rectangular billiards with the Aharonov-Bohm flux line. In the first model, using the properties of the Veech structure, it is shown that K2(0)=(n+ɛ(n))/(3(n-2)), where ɛ(n)= 0 for odd n, ɛ(n)= 2 for even n not divisible by 3, and ɛ(n)=6 for even n divisible by 3. For completeness we also recall informally the main features of the Veech construction. In the second model the answer depends on arithmetical properties of ratios of flux line coordinates to the corresponding sides of the rectangle. When these ratios are non-commensurable irrational numbers, K2(0)=1-3 , where is the fractional part of the flux through the rectangle when and it is symmetric with respect to the line when . The comparison of these results with numerical calculations of the form factor is discussed in detail. The above values of K2(0) differ from all known examples of spectral statistics, thus confirming analytically the peculiarities of statistical properties of the energy levels in pseudo-integrable systems.

  18. Wavelet-based adaptive thresholding method for image segmentation

    NASA Astrophysics Data System (ADS)

    Chen, Zikuan; Tao, Yang; Chen, Xin; Griffis, Carl

    2001-05-01

    A nonuniform background distribution may cause a global thresholding method to fail to segment objects. One solution is using a local thresholding method that adapts to local surroundings. In this paper, we propose a novel local thresholding method for image segmentation, using multiscale threshold functions obtained by wavelet synthesis with weighted detail coefficients. In particular, the coarse-to- fine synthesis with attenuated detail coefficients produces a threshold function corresponding to a high-frequency- reduced signal. This wavelet-based local thresholding method adapts to both local size and local surroundings, and its implementation can take advantage of the fast wavelet algorithm. We applied this technique to physical contaminant detection for poultry meat inspection using x-ray imaging. Experiments showed that inclusion objects in deboned poultry could be extracted at multiple resolutions despite their irregular sizes and uneven backgrounds.

  19. Pseudo-Outbreak of Lecanicillium and Acremonium Species in Orthopedic Surgery Patients

    PubMed Central

    Neal, Carolyn O. S.; Deak, Eszter; Chang, Loretta S.; Gilmartin, Heather; Gade, Lalitha; Imanishi, Maho; Price, Connie; Chiller, Tom; Balajee, S. Arunmozhi

    2012-01-01

    Acremonium species cause a variety of human infections, while Lecanicillium species have not been reported as human pathogens. We describe a pseudo-outbreak involving both organisms, highlighting the role and limitations of molecular methods in the characterization of rare fungal isolates. Repeated isolation of these fungi from patient tissue samples raises concerns about exogenous contamination in the hospital environment. PMID:23015668

  20. Thermodynamics of the pseudo-knot in helix 18 of 16S ribosomal RNA.

    PubMed

    Wojciechowska, Monika; Dudek, Marta; Trylska, Joanna

    2018-04-01

    A fragment of E. coli 16S rRNA formed by nucleotides 500 to 545 is termed helix 18. Nucleotides 505-507 and 524-526 form a pseudo-knot and its distortion affects ribosome function. Helix 18 isolated from the ribosome context is thus an interesting fragment to investigate the structural properties and folding of RNA with pseudo-knots. With all-atom molecular dynamics simulations, spectroscopic and gel electrophoresis experiments, we investigated thermodynamics of helix 18, with a focus on its pseudo-knot. In solution studies at ambient conditions we observed dimerization of helix 18. We proposed that the loop, containing nucleotides forming the pseudo-knot, interacts with another monomer of helix 18. The native dimer is difficult to break but introducing mutations in the pseudo-knot indeed assured a monomeric form of helix 18. Molecular dynamics simulations at 310 K confirmed the stability of the pseudo-knot but at elevated temperatures this pseudo-knot was the first part of helix 18 to lose the hydrogen bond pattern. To further determine helix 18 stability, we analyzed the interactions of helix 18 with short oligomers complementary to a nucleotide stretch containing the pseudo-knot. The formation of higher-order structures by helix 18 impacts hybridization efficiency of peptide nucleic acid and 2'-O methyl RNA oligomers. © 2018 Wiley Periodicals, Inc.

  1. Pseudo-lignin Formation during Dilute Acid Pretreatment for Cellulosic Ethanol

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Meng, Xianzhi; Ragauskas, Arthur J.

    Dilute acid-based pretreatment represents one of the most important pretreatment technologies to reduce biomass recalcitrance and it has been successfully applied to a wide range of feedstocks. During this type of pretreatment, the relative lignin content usually increases partially due to the loss of carbohydrates. More importantly, it has been reported that the increase of lignin content after dilute acid pretreatment is mainly due to the formation of pseudo-lignin. Furthermore, the exact reaction mechanisms leading to the formation of pseudo-lignin is still under investigation. However, it has been proposed that rearrangement of hydroxymethylfurfural (HMF) or furfural can produce aromatic typemore » of compounds which can further undergo polymerization reactions to from a lignin-like polyphenolic structures termed as pseudo-lignin. Likewise, this mini-review mainly covers recent advances in understanding the fundamentals of pseudo-lignin formation during dilute acid pretreatment, the impact of its formation on enzymatic hydrolysis, and how to suppress its formation during dilute acid pretreatment.« less

  2. Pseudo-lignin Formation during Dilute Acid Pretreatment for Cellulosic Ethanol

    DOE PAGES

    Meng, Xianzhi; Ragauskas, Arthur J.

    2017-04-17

    Dilute acid-based pretreatment represents one of the most important pretreatment technologies to reduce biomass recalcitrance and it has been successfully applied to a wide range of feedstocks. During this type of pretreatment, the relative lignin content usually increases partially due to the loss of carbohydrates. More importantly, it has been reported that the increase of lignin content after dilute acid pretreatment is mainly due to the formation of pseudo-lignin. Furthermore, the exact reaction mechanisms leading to the formation of pseudo-lignin is still under investigation. However, it has been proposed that rearrangement of hydroxymethylfurfural (HMF) or furfural can produce aromatic typemore » of compounds which can further undergo polymerization reactions to from a lignin-like polyphenolic structures termed as pseudo-lignin. Likewise, this mini-review mainly covers recent advances in understanding the fundamentals of pseudo-lignin formation during dilute acid pretreatment, the impact of its formation on enzymatic hydrolysis, and how to suppress its formation during dilute acid pretreatment.« less

  3. Adaptive methods, rolling contact, and nonclassical friction laws

    NASA Technical Reports Server (NTRS)

    Oden, J. T.

    1989-01-01

    Results and methods on three different areas of contemporary research are outlined. These include adaptive methods, the rolling contact problem for finite deformation of a hyperelastic or viscoelastic cylinder, and non-classical friction laws for modeling dynamic friction phenomena.

  4. The Formative Method for Adapting Psychotherapy (FMAP): A community-based developmental approach to culturally adapting therapy

    PubMed Central

    Hwang, Wei-Chin

    2010-01-01

    How do we culturally adapt psychotherapy for ethnic minorities? Although there has been growing interest in doing so, few therapy adaptation frameworks have been developed. The majority of these frameworks take a top-down theoretical approach to adapting psychotherapy. The purpose of this paper is to introduce a community-based developmental approach to modifying psychotherapy for ethnic minorities. The Formative Method for Adapting Psychotherapy (FMAP) is a bottom-up approach that involves collaborating with consumers to generate and support ideas for therapy adaptation. It involves 5-phases that target developing, testing, and reformulating therapy modifications. These phases include: (a) generating knowledge and collaborating with stakeholders (b) integrating generated information with theory and empirical and clinical knowledge, (c) reviewing the initial culturally adapted clinical intervention with stakeholders and revising the culturally adapted intervention, (d) testing the culturally adapted intervention, and (e) finalizing the culturally adapted intervention. Application of the FMAP is illustrated using examples from a study adapting psychotherapy for Chinese Americans, but can also be readily applied to modify therapy for other ethnic groups. PMID:20625458

  5. Production of bioethanol using agricultural waste: Banana pseudo stem

    PubMed Central

    Ingale, Snehal; Joshi, Sanket J.; Gupte, Akshaya

    2014-01-01

    India is amongst the largest banana (Musa acuminata) producing countries and thus banana pseudo stem is commonly available agricultural waste to be used as lignocellulosic substrate. Present study focuses on exploitation of banana pseudo stem as a source for bioethanol production from the sugars released due to different chemical and biological pretreatments. Two fungal strains Aspergillus ellipticus and Aspergillus fumigatus reported to be producing cellulolytic enzymes on sugarcane bagasse were used under co-culture fermentation on banana pseudo stem to degrade holocellulose and facilitate maximum release of reducing sugars. The hydrolysate obtained after alkali and microbial treatments was fermented by Saccharomyces cerevisiae NCIM 3570 to produce ethanol. Fermentation of cellulosic hydrolysate (4.1 g%) gave maximum ethanol (17.1 g/L) with yield (84%) and productivity (0.024 g%/h) after 72 h. Some critical aspects of fungal pretreatment for saccharification of cellulosic substrate using A. ellipticus and A. fumigatus for ethanol production by S. cerevisiae NCIM 3570 have been explored in this study. It was observed that pretreated banana pseudo stem can be economically utilized as a cheaper substrate for ethanol production. PMID:25477922

  6. A practical approach to spectral calibration of short wavelength infrared hyper-spectral imaging systems

    NASA Astrophysics Data System (ADS)

    Bürmen, Miran; Pernuš, Franjo; Likar, Boštjan

    2010-02-01

    Near-infrared spectroscopy is a promising, rapidly developing, reliable and noninvasive technique, used extensively in the biomedicine and in pharmaceutical industry. With the introduction of acousto-optic tunable filters (AOTF) and highly sensitive InGaAs focal plane sensor arrays, real-time high resolution hyper-spectral imaging has become feasible for a number of new biomedical in vivo applications. However, due to the specificity of the AOTF technology and lack of spectral calibration standardization, maintaining long-term stability and compatibility of the acquired hyper-spectral images across different systems is still a challenging problem. Efficiently solving both is essential as the majority of methods for analysis of hyper-spectral images relay on a priori knowledge extracted from large spectral databases, serving as the basis for reliable qualitative or quantitative analysis of various biological samples. In this study, we propose and evaluate fast and reliable spectral calibration of hyper-spectral imaging systems in the short wavelength infrared spectral region. The proposed spectral calibration method is based on light sources or materials, exhibiting distinct spectral features, which enable robust non-rigid registration of the acquired spectra. The calibration accounts for all of the components of a typical hyper-spectral imaging system such as AOTF, light source, lens and optical fibers. The obtained results indicated that practical, fast and reliable spectral calibration of hyper-spectral imaging systems is possible, thereby assuring long-term stability and inter-system compatibility of the acquired hyper-spectral images.

  7. Stability and error estimation for Component Adaptive Grid methods

    NASA Technical Reports Server (NTRS)

    Oliger, Joseph; Zhu, Xiaolei

    1994-01-01

    Component adaptive grid (CAG) methods for solving hyperbolic partial differential equations (PDE's) are discussed in this paper. Applying recent stability results for a class of numerical methods on uniform grids. The convergence of these methods for linear problems on component adaptive grids is established here. Furthermore, the computational error can be estimated on CAG's using the stability results. Using these estimates, the error can be controlled on CAG's. Thus, the solution can be computed efficiently on CAG's within a given error tolerance. Computational results for time dependent linear problems in one and two space dimensions are presented.

  8. Capillary Electrophoresis Sensitivity Enhancement Based on Adaptive Moving Average Method.

    PubMed

    Drevinskas, Tomas; Telksnys, Laimutis; Maruška, Audrius; Gorbatsova, Jelena; Kaljurand, Mihkel

    2018-06-05

    In the present work, we demonstrate a novel approach to improve the sensitivity of the "out of lab" portable capillary electrophoretic measurements. Nowadays, many signal enhancement methods are (i) underused (nonoptimal), (ii) overused (distorts the data), or (iii) inapplicable in field-portable instrumentation because of a lack of computational power. The described innovative migration velocity-adaptive moving average method uses an optimal averaging window size and can be easily implemented with a microcontroller. The contactless conductivity detection was used as a model for the development of a signal processing method and the demonstration of its impact on the sensitivity. The frequency characteristics of the recorded electropherograms and peaks were clarified. Higher electrophoretic mobility analytes exhibit higher-frequency peaks, whereas lower electrophoretic mobility analytes exhibit lower-frequency peaks. On the basis of the obtained data, a migration velocity-adaptive moving average algorithm was created, adapted, and programmed into capillary electrophoresis data-processing software. Employing the developed algorithm, each data point is processed depending on a certain migration time of the analyte. Because of the implemented migration velocity-adaptive moving average method, the signal-to-noise ratio improved up to 11 times for sampling frequency of 4.6 Hz and up to 22 times for sampling frequency of 25 Hz. This paper could potentially be used as a methodological guideline for the development of new smoothing algorithms that require adaptive conditions in capillary electrophoresis and other separation methods.

  9. A method to decompose spectral changes in Synechocystis PCC 6803 during light-induced state transitions.

    PubMed

    Acuña, Alonso M; Kaňa, Radek; Gwizdala, Michal; Snellenburg, Joris J; van Alphen, Pascal; van Oort, Bart; Kirilovsky, Diana; van Grondelle, Rienk; van Stokkum, Ivo H M

    2016-12-01

    Cyanobacteria have developed responses to maintain the balance between the energy absorbed and the energy used in different pigment-protein complexes. One of the relatively rapid (a few minutes) responses is activated when the cells are exposed to high light intensities. This mechanism thermally dissipates excitation energy at the level of the phycobilisome (PB) antenna before it reaches the reaction center. When exposed to low intensities of light that modify the redox state of the plastoquinone pool, the so-called state transitions redistribute energy between photosystem I and II. Experimental techniques to investigate the underlying mechanisms of these responses, such as pulse-amplitude modulated fluorometry, are based on spectrally integrated signals. Previously, a spectrally resolved fluorometry method has been introduced to preserve spectral information. The analysis method introduced in this work allows to interpret SRF data in terms of species-associated spectra of open/closed reaction centers (RCs), (un)quenched PB and state 1 versus state 2. Thus, spectral differences in the time-dependent fluorescence signature of photosynthetic organisms under varying light conditions can be traced and assigned to functional emitting species leading to a number of interpretations of their molecular origins. In particular, we present evidence that state 1 and state 2 correspond to different states of the PB-PSII-PSI megacomplex.

  10. A Multi-domain Spectral Method for Supersonic Reactive Flows

    NASA Technical Reports Server (NTRS)

    Don, Wai-Sun; Gottlieb, David; Jung, Jae-Hun; Bushnell, Dennis M. (Technical Monitor)

    2002-01-01

    This paper has a dual purpose: it presents a multidomain Chebyshev method for the solution of the two-dimensional reactive compressible Navier-Stokes equations, and it reports the results of the application of this code to the numerical simulations of high Mach number reactive flows in recessed cavity. The computational method utilizes newly derived interface boundary conditions as well as an adaptive filtering technique to stabilize the computations. The results of the simulations are relevant to recessed cavity flameholders.

  11. A New Pansharpening Method Based on Spatial and Spectral Sparsity Priors.

    PubMed

    He, Xiyan; Condat, Laurent; Bioucas-Diaz, Jose; Chanussot, Jocelyn; Xia, Junshi

    2014-06-27

    The development of multisensor systems in recent years has led to great increase in the amount of available remote sensing data. Image fusion techniques aim at inferring high quality images of a given area from degraded versions of the same area obtained by multiple sensors. This paper focuses on pansharpening, which is the inference of a high spatial resolution multispectral image from two degraded versions with complementary spectral and spatial resolution characteristics: a) a low spatial resolution multispectral image; and b) a high spatial resolution panchromatic image. We introduce a new variational model based on spatial and spectral sparsity priors for the fusion. In the spectral domain we encourage low-rank structure, whereas in the spatial domain we promote sparsity on the local differences. Given the fact that both panchromatic and multispectral images are integrations of the underlying continuous spectra using different channel responses, we propose to exploit appropriate regularizations based on both spatial and spectral links between panchromatic and the fused multispectral images. A weighted version of the vector Total Variation (TV) norm of the data matrix is employed to align the spatial information of the fused image with that of the panchromatic image. With regard to spectral information, two different types of regularization are proposed to promote a soft constraint on the linear dependence between the panchromatic and the fused multispectral images. The first one estimates directly the linear coefficients from the observed panchromatic and low resolution multispectral images by Linear Regression (LR) while the second one employs the Principal Component Pursuit (PCP) to obtain a robust recovery of the underlying low-rank structure. We also show that the two regularizers are strongly related. The basic idea of both regularizers is that the fused image should have low-rank and preserve edge locations. We use a variation of the recently proposed

  12. Study on structural and spectral properties of isobavachalcone and 4-hydroxyderricin by computational method

    NASA Astrophysics Data System (ADS)

    Rong, Yuzhi; Wu, Jinhong; Liu, Xing; Zhao, Bo; Wang, Zhengwu

    Isobavachalcone and 4-hydroxyderricin, two major chalcone constituents isolated from the roots of Angelica keiskei KOIDZUMI, exhibit numerous biological activities. Quantum chemical methods have been employed to investigate their structural and spectral properties. The ground state structures were optimized using density functional B3LYP method with 6-311G (d, p) basis set in both gas and solvent phases. Based on the optimized geometries, the harmonic vibrational frequency, the 1H and 13C nuclear magnetic resonance (NMR) chemical shift using the GIAO method were calculated at the same level of theory, with the aim of verifying the experimental values. Results reveal that B3LYP has been a good method to study their vibrational spectroscopic and NMR spectral properties of the two chalcones. The electronic absorption spectra were calculated using the time-dependent density functional theory (TDDFT) method. The solvent polarity effects were considered and calculated using the polarizable continuum model (PCM). Results also show that substitutions of different electron donating groups can alter the absorption properties and shift the spectra to a higher wavelength region.

  13. Three-dimensional self-adaptive grid method for complex flows

    NASA Technical Reports Server (NTRS)

    Djomehri, M. Jahed; Deiwert, George S.

    1988-01-01

    A self-adaptive grid procedure for efficient computation of three-dimensional complex flow fields is described. The method is based on variational principles to minimize the energy of a spring system analogy which redistributes the grid points. Grid control parameters are determined by specifying maximum and minimum grid spacing. Multidirectional adaptation is achieved by splitting the procedure into a sequence of successive applications of a unidirectional adaptation. One-sided, two-directional constraints for orthogonality and smoothness are used to enhance the efficiency of the method. Feasibility of the scheme is demonstrated by application to a multinozzle, afterbody, plume flow field. Application of the algorithm for initial grid generation is illustrated by constructing a three-dimensional grid about a bump-like geometry.

  14. Efficient Unstructured Grid Adaptation Methods for Sonic Boom Prediction

    NASA Technical Reports Server (NTRS)

    Campbell, Richard L.; Carter, Melissa B.; Deere, Karen A.; Waithe, Kenrick A.

    2008-01-01

    This paper examines the use of two grid adaptation methods to improve the accuracy of the near-to-mid field pressure signature prediction of supersonic aircraft computed using the USM3D unstructured grid flow solver. The first method (ADV) is an interactive adaptation process that uses grid movement rather than enrichment to more accurately resolve the expansion and compression waves. The second method (SSGRID) uses an a priori adaptation approach to stretch and shear the original unstructured grid to align the grid with the pressure waves and reduce the cell count required to achieve an accurate signature prediction at a given distance from the vehicle. Both methods initially create negative volume cells that are repaired in a module in the ADV code. While both approaches provide significant improvements in the near field signature (< 3 body lengths) relative to a baseline grid without increasing the number of grid points, only the SSGRID approach allows the details of the signature to be accurately computed at mid-field distances (3-10 body lengths) for direct use with mid-field-to-ground boom propagation codes.

  15. Constants and pseudo-constants of the Kadomtsev-Petviashvili equation.

    PubMed

    Case, K M

    1985-08-01

    Elucidating earlier work, it is shown that the Kadomtsev-Petviashvili equation has n + 2 constants for all n >/= 0. It also has a pseudo-constant from which the constants can be obtained by differentiation with respect to time. The pseudo-constant can be obtained from a basis functional J(n) ((n+2)) = -1/18 [unk] y(n+2)q by taking repeated Poisson brackets with the Hamiltonian.

  16. Role of pseudo-turbulent stresses in shocked particle clouds and construction of surrogate models for closure

    NASA Astrophysics Data System (ADS)

    Sen, O.; Gaul, N. J.; Davis, S.; Choi, K. K.; Jacobs, G.; Udaykumar, H. S.

    2018-05-01

    Macroscale models of shock-particle interactions require closure terms for unresolved solid-fluid momentum and energy transfer. These comprise the effects of mean as well as fluctuating fluid-phase velocity fields in the particle cloud. Mean drag and Reynolds stress equivalent terms (also known as pseudo-turbulent terms) appear in the macroscale equations. Closure laws for the pseudo-turbulent terms are constructed in this work from ensembles of high-fidelity mesoscale simulations. The computations are performed over a wide range of Mach numbers ( M) and particle volume fractions (φ ) and are used to explicitly compute the pseudo-turbulent stresses from the Favre average of the velocity fluctuations in the flow field. The computed stresses are then used as inputs to a Modified Bayesian Kriging method to generate surrogate models. The surrogates can be used as closure models for the pseudo-turbulent terms in macroscale computations of shock-particle interactions. It is found that the kinetic energy associated with the velocity fluctuations is comparable to that of the mean flow—especially for increasing M and φ . This work is a first attempt to quantify and evaluate the effect of velocity fluctuations for problems of shock-particle interactions.

  17. Role of pseudo-turbulent stresses in shocked particle clouds and construction of surrogate models for closure

    NASA Astrophysics Data System (ADS)

    Sen, O.; Gaul, N. J.; Davis, S.; Choi, K. K.; Jacobs, G.; Udaykumar, H. S.

    2018-02-01

    Macroscale models of shock-particle interactions require closure terms for unresolved solid-fluid momentum and energy transfer. These comprise the effects of mean as well as fluctuating fluid-phase velocity fields in the particle cloud. Mean drag and Reynolds stress equivalent terms (also known as pseudo-turbulent terms) appear in the macroscale equations. Closure laws for the pseudo-turbulent terms are constructed in this work from ensembles of high-fidelity mesoscale simulations. The computations are performed over a wide range of Mach numbers (M) and particle volume fractions (φ ) and are used to explicitly compute the pseudo-turbulent stresses from the Favre average of the velocity fluctuations in the flow field. The computed stresses are then used as inputs to a Modified Bayesian Kriging method to generate surrogate models. The surrogates can be used as closure models for the pseudo-turbulent terms in macroscale computations of shock-particle interactions. It is found that the kinetic energy associated with the velocity fluctuations is comparable to that of the mean flow—especially for increasing M and φ . This work is a first attempt to quantify and evaluate the effect of velocity fluctuations for problems of shock-particle interactions.

  18. Counselling quality in community pharmacies: implementation of the pseudo customer methodology in Germany.

    PubMed

    Berger, K; Eickhoff, C; Schulz, M

    2005-02-01

    To investigate a new method for evaluating counselling performance of staff in community pharmacies and to assess the quality of patient counselling. Trained pseudo customers, instructed to play their role according to two different self-medication scenarios, visited voluntarily participating community pharmacies in Berlin. After documenting the counselling process, immediately after each visit, outside the pharmacy on an assessment form, the pseudo customer re-entered the pharmacy and gave detailed performance feedback to the counsellor and the pharmacist in charge in order to provide support for improving counselling skills and practice behaviour, when appropriate. This was followed with a written summary of the general performance of all participating pharmacies and additional individual feedback and suggestions for improvement. Educational needs were identified for subsequent performance-based educational strategies such as group-workshops, team-training and on-site team-coaching. Forty-nine community pharmacies in Berlin volunteered to participate in this pilot study. Ninety-eight per cent of the participating pharmacies offered advice. However, in 36% of the cases, advice was only given on request. The different types of scenarios--presentation of a symptom or request for a specific product--made a great difference to the spontaneity of questions and advice. At least one question to check on accuracy of self-diagnosis was asked in 95% of the cases of symptom presentation but in only 47% of the cases of specific product request. Information on appropriate self-medication was provided on at least one item in 74% of pseudo customer visits, but most of the time the information was not sufficient. Communication skills (nonverbal elements, comprehensibility etc.) were very good or good in 54% of the visits. Potential for improvement was mainly in relation to the use of open-ended questions to gain more information and on counselling about appropriate self

  19. Intercomparison of 30+ years of AVHRR and Landsat-5 TM Surface Reflectance using Multiple Pseudo-Invariant Calibration Sites

    NASA Astrophysics Data System (ADS)

    Santamaría-Artigas, A. E.; Franch, B.; Vermote, E.; Roger, J. C.; Justice, C. O.

    2017-12-01

    The 30+ years daily surface reflectance long term data record (LTDR) from the Advanced Very High Resolution Radiometer (AVHRR) is a valuable source of information for long-term studies of the Earth surface. This LTDR was generated by combining observations from multiple AVHRR sensors aboard different NOAA satellites starting from the early 1980s, and due to the lack of on-board calibration its quality should be evaluated. Previous studies have used observations from the Moderate Resolution Imaging Spectroradiometer (MODIS) over pseudo-invariant calibration sites (PICS) as a calibrated reference to assess the performance of AVHRR products. However, this limits the evaluation to the period after MODIS launch. In this work, the AVHRR surface reflectance LTDR was evaluated against Landsat-5 Thematic Mapper (TM) data using observations from 4 well known pseudo-invariant calibration sites (i.e. Sonoran, Saharan, Sudan1, and Libya4) over an extended time period (1984-2011). For the intercomparison, AVHRR and TM observations of each site were extracted and averaged over a 20 km x 20 km area and aggregated to monthly mean values. In order to account for the spectral differences between sensors, Hyperion hyperspectral data from the Sonoran and Libya4 sites were convolved with sensor-specific relative spectral responses, and used to compute spectral band adjustment factors (SBAFs). Results of the intercomparison are reported in terms of the root mean square difference (RMSD) and determination coefficient (r2). In general, there is good agreement between the surface reflectance products from both sensors. The overall RMSD and r2 for all the sites and AVHRR/TM combinations were 0.03 and 0.85 for the red band, and 0.04 and 0.81 for the near-infrared band. These results show the strong performance of the AVHRR surface reflectance LTDR through all of the considered period. Thus, remarking its usefulness and value for long term Earth studies. Figure 1 shows the red (filled markers

  20. [Study on Application of NIR Spectral Information Screening in Identification of Maca Origin].

    PubMed

    Wang, Yuan-zhong; Zhao, Yan-li; Zhang, Ji; Jin, Hang

    2016-02-01

    Medicinal and edible plant Maca is rich in various nutrients and owns great medicinal value. Based on near infrared diffuse reflectance spectra, 139 Maca samples collected from Peru and Yunnan were used to identify their geographical origins. Multiplication signal correction (MSC) coupled with second derivative (SD) and Norris derivative filter (ND) was employed in spectral pretreatment. Spectrum range (7,500-4,061 cm⁻¹) was chosen by spectrum standard deviation. Combined with principal component analysis-mahalanobis distance (PCA-MD), the appropriate number of principal components was selected as 5. Based on the spectrum range and the number of principal components selected, two abnormal samples were eliminated by modular group iterative singular sample diagnosis method. Then, four methods were used to filter spectral variable information, competitive adaptive reweighted sampling (CARS), monte carlo-uninformative variable elimination (MC-UVE), genetic algorithm (GA) and subwindow permutation analysis (SPA). The spectral variable information filtered was evaluated by model population analysis (MPA). The results showed that RMSECV(SPA) > RMSECV(CARS) > RMSECV(MC-UVE) > RMSECV(GA), were 2. 14, 2. 05, 2. 02, and 1. 98, and the spectral variables were 250, 240, 250 and 70, respectively. According to the spectral variable filtered, partial least squares discriminant analysis (PLS-DA) was used to build the model, with random selection of 97 samples as training set, and the other 40 samples as validation set. The results showed that, R²: GA > MC-UVE > CARS > SPA, RMSEC and RMSEP: GA < MC-UVE < CARS spectral information selected by the four methods, GA, MC-UVE, CARS and SPA, the model prediction accuracy were 95.0%, 92.5%, 90.0% and 85.0%, respectively. Compared with the four methods, we could know that the origin discriminant models built based on spectra information filtered by the four methods possess good estimated performance. Among them, the model

  1. [Pseudo-continent perineal colostomy. Results and techniques].

    PubMed

    Lasser, P; Dubé, P; Guillot, J M; Elias, D

    1997-09-01

    This prospective study was conducted to assess functional results obtained after pseudo-continent perineal colostomy using the Schmidt procedure. Functional outcome was assessed in 40 patients who had undergone amputation of the rectum for cancer and pseudo-continent perineal colostomy reconstruction between 1989 and 1995 in our institution. The cancer pathology, operative procedure and post-operative care were noted. Morbidity, functional outcome and degree of patient satisfaction were recorded. Mean follow-up was 45 months (18-87) in 100% of the patients. There were no operative deaths. Twenty patients had post-operative complications and 2 patients required early conversion to definitive abdominal colostomy due to severe perineal complications. Function outcome showed normal continence in 4 patients, air incontinence in 23, occasional minimal leakage in 9 and incontinence requiring iliac colostomy in 2. Eighty-six percent of the patients were highly satisfied or satisfied with their continence capacity. Pseudo-continent perineal colostomy is a reliable technique which can be proposed as an alternative to left iliac colostomy after amputation of the rectum for cancer if a rigorous procedure is applied: careful patient selection, informed consent, rigorous surgical procedure, daily life-long irrigation of the colon.

  2. Post-traumatic hepatic artery pseudo-aneurysm combined with subphrenic liver abscess treated with embolization.

    PubMed

    Sun, Long; Guan, Yong-Song; Wu, Hua; Pan, Wei-Min; Li, Xiao; He, Qing; Liu, Yuan

    2006-05-07

    A 23-year-old man with post-traumatic hepatic artery pseudo-aneurysm and subphrenic liver abscess was admitted. He underwent coil embolization of hepatic artery pseudo-aneurysm. The pseudo-aneurysm was successfully obstructed and subphrenic liver abscess was controlled. Super-selective trans-catheter coil embolization may represent an effective treatment for hepatic artery pseudo-aneurysm combined with subphrenic liver abscess in the absence of other therapeutic alternatives.

  3. A spectral hybridizable discontinuous Galerkin method for elastic-acoustic wave propagation

    NASA Astrophysics Data System (ADS)

    Terrana, S.; Vilotte, J. P.; Guillot, L.

    2018-04-01

    We introduce a time-domain, high-order in space, hybridizable discontinuous Galerkin (DG) spectral element method (HDG-SEM) for wave equations in coupled elastic-acoustic media. The method is based on a first-order hyperbolic velocity-strain formulation of the wave equations written in conservative form. This method follows the HDG approach by introducing a hybrid unknown, which is the approximation of the velocity on the elements boundaries, as the only globally (i.e. interelement) coupled degrees of freedom. In this paper, we first present a hybridized formulation of the exact Riemann solver at the element boundaries, taking into account elastic-elastic, acoustic-acoustic and elastic-acoustic interfaces. We then use this Riemann solver to derive an explicit construction of the HDG stabilization function τ for all the above-mentioned interfaces. We thus obtain an HDG scheme for coupled elastic-acoustic problems. This scheme is then discretized in space on quadrangular/hexahedral meshes using arbitrary high-order polynomial basis for both volumetric and hybrid fields, using an approach similar to the spectral element methods. This leads to a semi-discrete system of algebraic differential equations (ADEs), which thanks to the structure of the global conservativity condition can be reformulated easily as a classical system of first-order ordinary differential equations in time, allowing the use of classical explicit or implicit time integration schemes. When an explicit time scheme is used, the HDG method can be seen as a reformulation of a DG with upwind fluxes. The introduction of the velocity hybrid unknown leads to relatively simple computations at the element boundaries which, in turn, makes the HDG approach competitive with the DG-upwind methods. Extensive numerical results are provided to illustrate and assess the accuracy and convergence properties of this HDG-SEM. The approximate velocity is shown to converge with the optimal order of k + 1 in the L2-norm

  4. Adaptive Prior Variance Calibration in the Bayesian Continual Reassessment Method

    PubMed Central

    Zhang, Jin; Braun, Thomas M.; Taylor, Jeremy M.G.

    2012-01-01

    Use of the Continual Reassessment Method (CRM) and other model-based approaches to design in Phase I clinical trials has increased due to the ability of the CRM to identify the maximum tolerated dose (MTD) better than the 3+3 method. However, the CRM can be sensitive to the variance selected for the prior distribution of the model parameter, especially when a small number of patients are enrolled. While methods have emerged to adaptively select skeletons and to calibrate the prior variance only at the beginning of a trial, there has not been any approach developed to adaptively calibrate the prior variance throughout a trial. We propose three systematic approaches to adaptively calibrate the prior variance during a trial and compare them via simulation to methods proposed to calibrate the variance at the beginning of a trial. PMID:22987660

  5. Free energy calculations: an efficient adaptive biasing potential method.

    PubMed

    Dickson, Bradley M; Legoll, Frédéric; Lelièvre, Tony; Stoltz, Gabriel; Fleurat-Lessard, Paul

    2010-05-06

    We develop an efficient sampling and free energy calculation technique within the adaptive biasing potential (ABP) framework. By mollifying the density of states we obtain an approximate free energy and an adaptive bias potential that is computed directly from the population along the coordinates of the free energy. Because of the mollifier, the bias potential is "nonlocal", and its gradient admits a simple analytic expression. A single observation of the reaction coordinate can thus be used to update the approximate free energy at every point within a neighborhood of the observation. This greatly reduces the equilibration time of the adaptive bias potential. This approximation introduces two parameters: strength of mollification and the zero of energy of the bias potential. While we observe that the approximate free energy is a very good estimate of the actual free energy for a large range of mollification strength, we demonstrate that the errors associated with the mollification may be removed via deconvolution. The zero of energy of the bias potential, which is easy to choose, influences the speed of convergence but not the limiting accuracy. This method is simple to apply to free energy or mean force computation in multiple dimensions and does not involve second derivatives of the reaction coordinates, matrix manipulations nor on-the-fly adaptation of parameters. For the alanine dipeptide test case, the new method is found to gain as much as a factor of 10 in efficiency as compared to two basic implementations of the adaptive biasing force methods, and it is shown to be as efficient as well-tempered metadynamics with the postprocess deconvolution giving a clear advantage to the mollified density of states method.

  6. Semiclassical analysis for pseudo-relativistic Hartree equations

    NASA Astrophysics Data System (ADS)

    Cingolani, Silvia; Secchi, Simone

    2015-06-01

    In this paper we study the semiclassical limit for the pseudo-relativistic Hartree equation $\\sqrt{-\\varepsilon^2 \\Delta + m^2}u + V u = (I_\\alpha * |u|^{p}) |u|^{p-2}u$ in $\\mathbb{R}^N$ where $m>0$, $2 \\leq p < \\frac{2N}{N-1}$, $V \\colon \\mathbb{R}^N \\to \\mathbb{R}$ is an external scalar potential, $I_\\alpha (x) = \\frac{c_{N,\\alpha}}{|x|^{N-\\alpha}}$ is a convolution kernel, $c_{N,\\alpha}$ is a positive constant and $(N-1)p-N<\\alpha pseudo-relativistic Hartree equation with Coulomb kernel.

  7. Spectral estimation—What is new? What is next?

    NASA Astrophysics Data System (ADS)

    Tary, Jean Baptiste; Herrera, Roberto Henry; Han, Jiajun; van der Baan, Mirko

    2014-12-01

    Spectral estimation, and corresponding time-frequency representation for nonstationary signals, is a cornerstone in geophysical signal processing and interpretation. The last 10-15 years have seen the development of many new high-resolution decompositions that are often fundamentally different from Fourier and wavelet transforms. These conventional techniques, like the short-time Fourier transform and the continuous wavelet transform, show some limitations in terms of resolution (localization) due to the trade-off between time and frequency localizations and smearing due to the finite size of the time series of their template. Well-known techniques, like autoregressive methods and basis pursuit, and recently developed techniques, such as empirical mode decomposition and the synchrosqueezing transform, can achieve higher time-frequency localization due to reduced spectral smearing and leakage. We first review the theory of various established and novel techniques, pointing out their assumptions, adaptability, and expected time-frequency localization. We illustrate their performances on a provided collection of benchmark signals, including a laughing voice, a volcano tremor, a microseismic event, and a global earthquake, with the intention to provide a fair comparison of the pros and cons of each method. Finally, their outcomes are discussed and possible avenues for improvements are proposed.

  8. Pseudo-invariants contributing to inverse energy cascades in three-dimensional turbulence

    NASA Astrophysics Data System (ADS)

    Rathmann, Nicholas M.; Ditlevsen, Peter D.

    2017-05-01

    Three-dimensional (3D) turbulence is characterized by a dual forward cascade of both kinetic energy and helicity, a second inviscid flow invariant besides energy, from the integral scale of motion to the viscous dissipative scale. In helical flows, however, such as strongly rotating flows with broken mirror symmetry, an inverse (reversed) energy cascade can be observed analogous to that of two-dimensional turbulence (2D) where enstrophy, a second positive-definite flow invariant, unlike helicity in 3D, effectively blocks the forward cascade of energy. In the spectral-helical decomposition of the Navier-Stokes equation, it has previously been shown that a subset of three-wave (triad) interactions conserve helicity in 3D in a fashion similar to enstrophy in 2D, thus leading to a 2D-like inverse energy cascade in 3D. In this work, we show, both theoretically and numerically, that an additional subset of interactions exist, conserving a new pseudo-invariant in addition to energy and helicity, which contributes either to a forward or an inverse energy cascade depending on the specific triad interaction geometry.

  9. Imaging of VMAT2 binding sites in the brain by (18)F-AV-133: the effect of a pseudo-carrier.

    PubMed

    Zhu, Lin; Qiao, Hongwen; Lieberman, Brian P; Wu, Jingxiao; Liu, Yajing; Pan, Zhongyun; Ploessl, Karl; Choi, Seok Rye; Chan, Piu; Kung, Hank F

    2012-10-01

    Recently, 9-[(18)F]fluoropropyl-(+)-dihydrotetrabenazine ((18)F-AV-133) was reported as a new vesicular monoamine transporter (VMAT2) imaging agent for diagnosis of Parkinson's disease (PD). To shorten the preparation of (18)F-AV-133 and to make it more widely available, we evaluated a simple, rapid purification with a solid-phase extraction method (SPE) using an Oasis HLB cartridge instead of high pressure liquid chromatography (HPLC). The SPE method produced doses containing a pseudo-carrier, 9-hydroxypropyl-(+)-dihydrotetrabenazine (AV-149). To test the possible side effects of this pseudo-carrier, comparative dynamic PET scans of the brains of normal monkeys (2 each) and uni-laterally 6-OH-dopamine-lesioned PD monkeys (2 each) were performed using (18)F-AV-133 doses prepared by either SPE (containing pseudo-carrier) or HPLC (containing no pseudo-carrier). Autoradiographs of post mortem monkey brain sections were evaluated to confirm the relative (18)F-AV-133 uptake in the PD monkey brains and the effects of the pseudo-carrier on VMAT2 binding. The radiochemical purity of the (18)F-AV-133, whether prepared by SPE or by HPLC, was excellent (>99%). PET scans of normal and PD monkey brains showed an expected reduction of VMAT2 in the lesioned areas of the striatum. It was not affected by the presence of the pseudo-carrier, AV-149 (maximally 250 μg/dose). The reduced uptake in the striatum of the lesioned monkey brains was confirmed by autoradiography. Ex vivo inhibition studies of (18)F-AV-133 binding in rat brains, conducted with increasing amounts of AV-149, suggested that at the highest concentration (3.5mg/kg) the VMAT2 binding in the striatum was only moderately blocked (20% reduction). The pseudo-carrier, AV-149, did not affect the (18)F-AV-133/PET imaging of VMAT2 binding sites in normal or uni-laterally lesioned monkey brains. The new streamlined SPE purification method will enable (18)F-AV-133 to be widely available for routine clinical application in

  10. Post-traumatic hepatic artery pseudo-aneurysm combined with subphrenic liver abscess treated with embolization

    PubMed Central

    Sun, Long; Guan, Yong-Song; Wu, Hua; Pan, Wei-Min; Li, Xiao; He, Qing; Liu, Yuan

    2006-01-01

    A 23-year-old man with post-traumatic hepatic artery pseudo-aneurysm and subphrenic liver abscess was admitted. He underwent coil embolization of hepatic artery pseudo-aneurysm. The pseudo-aneurysm was successfully obstructed and subphrenic liver abscess was controlled. Super-selective trans-catheter coil embolization may represent an effective treatment for hepatic artery pseudo-aneurysm combined with subphrenic liver abscess in the absence of other therapeutic alternatives. PMID:16718774

  11. Pseudo-Equivalent Groups and Linking

    ERIC Educational Resources Information Center

    Haberman, Shelby J.

    2015-01-01

    Adjustment by minimum discriminant information provides an approach to linking test forms in the case of a nonequivalent groups design with no satisfactory common items. This approach employs background information on individual examinees in each administration so that weighted samples of examinees form pseudo-equivalent groups in the sense that…

  12. Constants and pseudo-constants of the Kadomtsev-Petviashvili equation

    PubMed Central

    Case, K. M.

    1985-01-01

    Elucidating earlier work, it is shown that the Kadomtsev-Petviashvili equation has n + 2 constants for all n ≥ 0. It also has a pseudo-constant from which the constants can be obtained by differentiation with respect to time. The pseudo-constant can be obtained from a basis functional Jn(n+2) = -1/18 [unk] yn+2q by taking repeated Poisson brackets with the Hamiltonian. PMID:16593588

  13. A Pseudo Fractional-N Clock Generator with 50% Duty Cycle Output

    NASA Astrophysics Data System (ADS)

    Yang, Wei-Bin; Lo, Yu-Lung; Chao, Ting-Sheng

    A proposed pseudo fractional-N clock generator with 50% duty cycle output is presented by using the pseudo fractional-N controller for SoC chips and the dynamic frequency scaling applications. The different clock frequencies can be generated with the particular phase combinations of a four-stage voltage-controlled oscillator (VCO). It has been fabricated in a 0.13µm CMOS technology, and work with a supply voltage of 1.2V. According to measured results, the frequency range of the proposed pseudo fractional-N clock generator is from 71.4MHz to 1GHz and the peak-to-peak jitter is less than 5% of the output period. Duty cycle error rates of the output clock frequencies are from 0.8% to 2% and the measured power dissipation of the pseudo fractional-N controller is 146µW at 304MHz.

  14. Studies toward the synthesis of linear triazole linked pseudo oligosaccharides and the use of ferrocene as analytical probe.

    PubMed

    Schmidt, Magnus S; Götz, Kathrin H; Koch, Wolfgang; Grimm, Tanja; Ringwald, Markus

    2016-04-29

    Three different building blocks have been synthesised and used for the synthesis of linear triazole linked pseudo oligosaccharides with copper(I)-catalysed cycloaddition (CuAAC). Ethynylferrocene has been used as analytical probe to improve the UV/Vis properties and HPLC methods have been used and optimised for the analysis of the pseudo oligosaccharides. The smallest ones have been isolated and characterised by analytical HPLC, NMR, ESI-MS and elemental analysis. Copyright © 2016 Elsevier Ltd. All rights reserved.

  15. Validating Pseudo-dynamic Source Models against Observed Ground Motion Data at the SCEC Broadband Platform, Ver 16.5

    NASA Astrophysics Data System (ADS)

    Song, S. G.

    2016-12-01

    Simulation-based ground motion prediction approaches have several benefits over empirical ground motion prediction equations (GMPEs). For instance, full 3-component waveforms can be produced and site-specific hazard analysis is also possible. However, it is important to validate them against observed ground motion data to confirm their efficiency and validity before practical uses. There have been community efforts for these purposes, which are supported by the Broadband Platform (BBP) project at the Southern California Earthquake Center (SCEC). In the simulation-based ground motion prediction approaches, it is a critical element to prepare a possible range of scenario rupture models. I developed a pseudo-dynamic source model for Mw 6.5-7.0 by analyzing a number of dynamic rupture models, based on 1-point and 2-point statistics of earthquake source parameters (Song et al. 2014; Song 2016). In this study, the developed pseudo-dynamic source models were tested against observed ground motion data at the SCEC BBP, Ver 16.5. The validation was performed at two stages. At the first stage, simulated ground motions were validated against observed ground motion data for past events such as the 1992 Landers and 1994 Northridge, California, earthquakes. At the second stage, they were validated against the latest version of empirical GMPEs, i.e., NGA-West2. The validation results show that the simulated ground motions produce ground motion intensities compatible with observed ground motion data at both stages. The compatibility of the pseudo-dynamic source models with the omega-square spectral decay and the standard deviation of the simulated ground motion intensities are also discussed in the study

  16. Optimization design of spectral discriminator for high-spectral-resolution lidar based on error analysis.

    PubMed

    Di, Huige; Zhang, Zhanfei; Hua, Hangbo; Zhang, Jiaqi; Hua, Dengxin; Wang, Yufeng; He, Tingyao

    2017-03-06

    Accurate aerosol optical properties could be obtained via the high spectral resolution lidar (HSRL) technique, which employs a narrow spectral filter to suppress the Rayleigh or Mie scattering in lidar return signals. The ability of the filter to suppress Rayleigh or Mie scattering is critical for HSRL. Meanwhile, it is impossible to increase the rejection of the filter without limitation. How to optimize the spectral discriminator and select the appropriate suppression rate of the signal is important to us. The HSRL technology was thoroughly studied based on error propagation. Error analyses and sensitivity studies were carried out on the transmittance characteristics of the spectral discriminator. Moreover, ratwo different spectroscopic methods for HSRL were described and compared: one is to suppress the Mie scattering; the other is to suppress the Rayleigh scattering. The corresponding HSRLs were simulated and analyzed. The results show that excessive suppression of Rayleigh scattering or Mie scattering in a high-spectral channel is not necessary if the transmittance of the spectral filter for molecular and aerosol scattering signals can be well characterized. When the ratio of transmittance of the spectral filter for aerosol scattering and molecular scattering is less than 0.1 or greater than 10, the detection error does not change much with its value. This conclusion implies that we have more choices for the high-spectral discriminator in HSRL. Moreover, the detection errors of HSRL regarding the two spectroscopic methods vary greatly with the atmospheric backscattering ratio. To reduce the detection error, it is necessary to choose a reasonable spectroscopic method. The detection method of suppressing the Rayleigh signal and extracting the Mie signal can achieve less error in a clear atmosphere, while the method of suppressing the Mie signal and extracting the Rayleigh signal can achieve less error in a polluted atmosphere.

  17. Locally adaptive parallel temperature accelerated dynamics method

    NASA Astrophysics Data System (ADS)

    Shim, Yunsic; Amar, Jacques G.

    2010-03-01

    The recently-developed temperature-accelerated dynamics (TAD) method [M. Sørensen and A.F. Voter, J. Chem. Phys. 112, 9599 (2000)] along with the more recently developed parallel TAD (parTAD) method [Y. Shim et al, Phys. Rev. B 76, 205439 (2007)] allow one to carry out non-equilibrium simulations over extended time and length scales. The basic idea behind TAD is to speed up transitions by carrying out a high-temperature MD simulation and then use the resulting information to obtain event times at the desired low temperature. In a typical implementation, a fixed high temperature Thigh is used. However, in general one expects that for each configuration there exists an optimal value of Thigh which depends on the particular transition pathways and activation energies for that configuration. Here we present a locally adaptive high-temperature TAD method in which instead of using a fixed Thigh the high temperature is dynamically adjusted in order to maximize simulation efficiency. Preliminary results of the performance obtained from parTAD simulations of Cu/Cu(100) growth using the locally adaptive Thigh method will also be presented.

  18. Application of the spectral-correlation method for diagnostics of cellulose paper

    NASA Astrophysics Data System (ADS)

    Kiesewetter, D.; Malyugin, V.; Reznik, A.; Yudin, A.; Zhuravleva, N.

    2017-11-01

    The spectral-correlation method was described for diagnostics of optically inhomogeneous biological objects and materials of natural origin. The interrelation between parameters of the studied objects and parameters of the cross correlation function of speckle patterns produced by scattering of coherent light at different wavelengths is shown for thickness, optical density and internal structure of the material. A detailed study was performed for cellulose electric insulating paper with different parameters.

  19. A self-adaptive-grid method with application to airfoil flow

    NASA Technical Reports Server (NTRS)

    Nakahashi, K.; Deiwert, G. S.

    1985-01-01

    A self-adaptive-grid method is described that is suitable for multidimensional steady and unsteady computations. Based on variational principles, a spring analogy is used to redistribute grid points in an optimal sense to reduce the overall solution error. User-specified parameters, denoting both maximum and minimum permissible grid spacings, are used to define the all-important constants, thereby minimizing the empiricism and making the method self-adaptive. Operator splitting and one-sided controls for orthogonality and smoothness are used to make the method practical, robust, and efficient. Examples are included for both steady and unsteady viscous flow computations about airfoils in two dimensions, as well as for a steady inviscid flow computation and a one-dimensional case. These examples illustrate the precise control the user has with the self-adaptive method and demonstrate a significant improvement in accuracy and quality of the solutions.

  20. A fully-coupled discontinuous Galerkin spectral element method for two-phase flow in petroleum reservoirs

    NASA Astrophysics Data System (ADS)

    Taneja, Ankur; Higdon, Jonathan

    2018-01-01

    A high-order spectral element discontinuous Galerkin method is presented for simulating immiscible two-phase flow in petroleum reservoirs. The governing equations involve a coupled system of strongly nonlinear partial differential equations for the pressure and fluid saturation in the reservoir. A fully implicit method is used with a high-order accurate time integration using an implicit Rosenbrock method. Numerical tests give the first demonstration of high order hp spatial convergence results for multiphase flow in petroleum reservoirs with industry standard relative permeability models. High order convergence is shown formally for spectral elements with up to 8th order polynomials for both homogeneous and heterogeneous permeability fields. Numerical results are presented for multiphase fluid flow in heterogeneous reservoirs with complex geometric or geologic features using up to 11th order polynomials. Robust, stable simulations are presented for heterogeneous geologic features, including globally heterogeneous permeability fields, anisotropic permeability tensors, broad regions of low-permeability, high-permeability channels, thin shale barriers and thin high-permeability fractures. A major result of this paper is the demonstration that the resolution of the high order spectral element method may be exploited to achieve accurate results utilizing a simple cartesian mesh for non-conforming geological features. Eliminating the need to mesh to the boundaries of geological features greatly simplifies the workflow for petroleum engineers testing multiple scenarios in the face of uncertainty in the subsurface geology.