Science.gov

Sample records for additional web resources

  1. Genetic toxicology: web resources.

    PubMed

    Young, Robert R

    2002-04-25

    Genetic toxicology is the scientific discipline dealing with the effects of chemical, physical and biological agents on the heredity of living organisms. The Internet offers a wide range of online digital resources for the field of Genetic Toxicology. The history of genetic toxicology and electronic data collections are reviewed. Web-based resources at US National Library of Medicine (NLM), including MEDLINE, PUBMED, Gateway, Entrez, and TOXNET, are discussed. Search strategies and Medical Subject Headings (MeSH) are reviewed in the context of genetic toxicology. The TOXNET group of databases are discussed with emphasis on those databases with genetic toxicology content including GENE-TOX, TOXLINE, Hazardous Substances Data Bank, Integrated Risk Information System, and Chemical Carcinogenesis Research Information System. Location of chemical information including chemical structure and linkage to health and regulatory information using CHEMIDPLUS at NLM and other databases is reviewed. Various government agencies have active genetic toxicology research programs or use genetic toxicology data to assist fulfilling the agency's mission. Online resources at the US Food and Drug Administration (FDA), the US Environmental Protection Agency (EPA), the National Institutes of Environmental Health Sciences, and the National Toxicology Program (NTP) are outlined. Much of the genetic toxicology for pharmaceuticals, industrial chemicals and pesticides that is performed in the world is regulatory-driven. Regulatory web resources are presented for the laws mandating testing, guidelines on study design, Good Laboratory Practice (GLP) regulations, and requirements for electronic data collection and reporting. The Internet provides a range of other supporting resources to the field of genetic toxicology. The web links for key professional societies and journals in genetic toxicology are listed. Distance education, educational media resources, and job placement services are also

  2. Web Resources for Pharmacogenomics

    PubMed Central

    Zhang, Guoqing; Zhang, Yunsheng; Ling, Yunchao; Jia, Jia

    2015-01-01

    Pharmacogenomics is the study of the impact of genetic variations or genotypes of individuals on their drug response or drug metabolism. Compared to traditional genomics research, pharmacogenomic research is more closely related to clinical practice. Pharmacogenomic discoveries may effectively assist clinicians and healthcare providers in determining the right drugs and proper dose for each patient, which can help avoid side effects or adverse reactions, and improve the drug therapy. Currently, pharmacogenomic approaches have proven their utility when it comes to the use of cardiovascular drugs, antineoplastic drugs, aromatase inhibitors, and agents used for infectious diseases. The rapid innovation in sequencing technology and genome-wide association studies has led to the development of numerous data resources and dramatically changed the landscape of pharmacogenomic research. Here we describe some of these web resources along with their names, web links, main contents, and our ratings. PMID:25703229

  3. Web resources for pharmacogenomics.

    PubMed

    Zhang, Guoqing; Zhang, Yunsheng; Ling, Yunchao; Jia, Jia

    2015-02-01

    Pharmacogenomics is the study of the impact of genetic variations or genotypes of individuals on their drug response or drug metabolism. Compared to traditional genomics research, pharmacogenomic research is more closely related to clinical practice. Pharmacogenomic discoveries may effectively assist clinicians and healthcare providers in determining the right drugs and proper dose for each patient, which can help avoid side effects or adverse reactions, and improve the drug therapy. Currently, pharmacogenomic approaches have proven their utility when it comes to the use of cardiovascular drugs, antineoplastic drugs, aromatase inhibitors, and agents used for infectious diseases. The rapid innovation in sequencing technology and genome-wide association studies has led to the development of numerous data resources and dramatically changed the landscape of pharmacogenomic research. Here we describe some of these web resources along with their names, web links, main contents, and our ratings.

  4. The Web Resource Collaboration Center

    ERIC Educational Resources Information Center

    Dunlap, Joanna C.

    2004-01-01

    The Web Resource Collaboration Center (WRCC) is a web-based tool developed to help software engineers build their own web-based learning and performance support systems. Designed using various online communication and collaboration technologies, the WRCC enables people to: (1) build a learning and professional development resource that provides…

  5. Metadata for Web Resources: How Metadata Works on the Web.

    ERIC Educational Resources Information Center

    Dillon, Martin

    This paper discusses bibliographic control of knowledge resources on the World Wide Web. The first section sets the context of the inquiry. The second section covers the following topics related to metadata: (1) definitions of metadata, including metadata as tags and as descriptors; (2) metadata on the Web, including general metadata systems,…

  6. Web resources for stem cell research.

    PubMed

    Wei, Ting; Peng, Xing; Ye, Lili; Wang, Jiajia; Song, Fuhai; Bai, Zhouxian; Han, Guangchun; Ji, Fengmin; Lei, Hongxing

    2015-02-01

    In this short review, we have presented a brief overview on major web resources relevant to stem cell research. To facilitate more efficient use of these resources, we have provided a preliminary rating based on our own user experience of the overall quality for each resource. We plan to update the information on an annual basis. PMID:25701763

  7. Web Resources for Special Education

    ERIC Educational Resources Information Center

    Singh, Delar K.

    2010-01-01

    The purpose of this paper is to provide brief descriptions and links to a number of reputed websites on various topics and issues of special education. The web sites are organized in the following categories: (1) Teaching in Inclusive Classroom, (2) Policies, Procedures, & Process of Special education, (3) Students with High Incidence…

  8. Additional Resources on Asian Americans.

    ERIC Educational Resources Information Center

    Kodama, Corinne Maekawa; Lee, Sunny; Liang, Christopher T. H.; Alvarez, Alvin N.; McEwen, Marylu K.

    2002-01-01

    The authors identify Asian American associations and organizations, academic journals, periodicals, and media resources. Selected annotated resources on Asian American activism and politics, counseling and psychology, educational issues, gender and sexual orientation, history, policy reports, and racial and ethnic identity are also included.…

  9. Understanding and Supporting Web Developers: Design and Evaluation of a Web Accessibility Information Resource (WebAIR).

    PubMed

    Swallow, David; Petrie, Helen; Power, Christopher

    2016-01-01

    This paper describes the design and evaluation of a Web Accessibility Information Resource (WebAIR) for supporting web developers to create and evaluate accessible websites. WebAIR was designed with web developers in mind, recognising their current working practices and acknowledging their existing understanding of web accessibility. We conducted an evaluation with 32 professional web developers in which they used either WebAIR or an existing accessibility information resource, the Web Content Accessibility Guidelines, to identify accessibility problems. The findings indicate that several design decisions made in relation to the language, organisation, and volume of WebAIR were effective in supporting web developers to undertake web accessibility evaluations.

  10. Health and medication information resources on the World Wide Web.

    PubMed

    Grossman, Sara; Zerilli, Tina

    2013-04-01

    Health care practitioners have increasingly used the Internet to obtain health and medication information. The vast number of Internet Web sites providing such information and concerns with their reliability makes it essential for users to carefully select and evaluate Web sites prior to use. To this end, this article reviews the general principles to consider in this process. Moreover, as cost may limit access to subscription-based health and medication information resources with established reputability, freely accessible online resources that may serve as an invaluable addition to one's reference collection are highlighted. These include government- and organization-sponsored resources (eg, US Food and Drug Administration Web site and the American Society of Health-System Pharmacists' Drug Shortage Resource Center Web site, respectively) as well as commercial Web sites (eg, Medscape, Google Scholar). Familiarity with such online resources can assist health care professionals in their ability to efficiently navigate the Web and may potentially expedite the information gathering and decision-making process, thereby improving patient care.

  11. Web resources for neurologists and neurosurgeons.

    PubMed

    Prasad, Murali; Kumar, Vijay

    2013-01-01

    The medical professionals are facing major challenges to keep abreast of current and updated information with the rapidly growing scientific and clinical knowledge. The benefits of medicine have been increasingly evident providing ever wide access to a universe of online medical resources. The authors have made an attempt to compile a directory of digital resources on Neurology and Neurosurgery and allied areas which are available over web.

  12. Web Resources for Metagenomics Studies.

    PubMed

    Dudhagara, Pravin; Bhavsar, Sunil; Bhagat, Chintan; Ghelani, Anjana; Bhatt, Shreyas; Patel, Rajesh

    2015-10-01

    The development of next-generation sequencing (NGS) platforms spawned an enormous volume of data. This explosion in data has unearthed new scalability challenges for existing bioinformatics tools. The analysis of metagenomic sequences using bioinformatics pipelines is complicated by the substantial complexity of these data. In this article, we review several commonly-used online tools for metagenomics data analysis with respect to their quality and detail of analysis using simulated metagenomics data. There are at least a dozen such software tools presently available in the public domain. Among them, MGRAST, IMG/M, and METAVIR are the most well-known tools according to the number of citations by peer-reviewed scientific media up to mid-2015. Here, we describe 12 online tools with respect to their web link, annotation pipelines, clustering methods, online user support, and availability of data storage. We have also done the rating for each tool to screen more potential and preferential tools and evaluated five best tools using synthetic metagenome. The article comprehensively deals with the contemporary problems and the prospects of metagenomics from a bioinformatics viewpoint. PMID:26602607

  13. Web Resources for Metagenomics Studies.

    PubMed

    Dudhagara, Pravin; Bhavsar, Sunil; Bhagat, Chintan; Ghelani, Anjana; Bhatt, Shreyas; Patel, Rajesh

    2015-10-01

    The development of next-generation sequencing (NGS) platforms spawned an enormous volume of data. This explosion in data has unearthed new scalability challenges for existing bioinformatics tools. The analysis of metagenomic sequences using bioinformatics pipelines is complicated by the substantial complexity of these data. In this article, we review several commonly-used online tools for metagenomics data analysis with respect to their quality and detail of analysis using simulated metagenomics data. There are at least a dozen such software tools presently available in the public domain. Among them, MGRAST, IMG/M, and METAVIR are the most well-known tools according to the number of citations by peer-reviewed scientific media up to mid-2015. Here, we describe 12 online tools with respect to their web link, annotation pipelines, clustering methods, online user support, and availability of data storage. We have also done the rating for each tool to screen more potential and preferential tools and evaluated five best tools using synthetic metagenome. The article comprehensively deals with the contemporary problems and the prospects of metagenomics from a bioinformatics viewpoint.

  14. Additional Financial Resources for Education.

    ERIC Educational Resources Information Center

    Hubbard, Ben C.

    This paper discusses the continuing need for additional educational funds and suggests that the only way to gain these funds is through concerted and persistent political efforts by supporters of education at both the federal and state levels. The author first points out that for many reasons declining enrollment may not decrease operating costs…

  15. Applying Web Usability Techniques to Assess Student Awareness of Library Web Resources

    ERIC Educational Resources Information Center

    Krueger, Janice; Ray, Ron L.; Knight, Lorrie

    2004-01-01

    The authors adapted Web usability techniques to assess student awareness of their library's Web site. Students performed search tasks using a Web browser. Approaches were categorized according to a student's preference for, and success with, the library's Web resources. Forty-five percent of the students utilized the library's Web site as first…

  16. WebQuest: Using Internet Resources for Cooperative Inquiry.

    ERIC Educational Resources Information Center

    Milson, Andrew J.; Downey, Portia

    2001-01-01

    Offers a description of WebQuests, defining it as an activity that primarily uses Internet resources. Explains that WebQuests consist of five parts (Introduction, Task, Process, Evaluation, and Conclusion). Presents a WebQuest example used with elementary students studying ancient Egypt. Includes a list of Web sites and an example rubric. (CMK)

  17. Shakespeare Goes Online: Web Resources for Teaching Shakespeare.

    ERIC Educational Resources Information Center

    Schuetz, Carol L.

    This annotated bibliography contains five sections and 62 items. The first section lists general resources including six Web site addresses; the second section, on Shakespeare's works, contains five Web site addresses; the third section, on Shakespeare and the Globe Theatre, provides five Web site addresses; the fourth section presents classroom…

  18. Web-Based Resources and Applications: Quality and Influence

    ERIC Educational Resources Information Center

    Liu, Leping; Johnson, D. Lamont

    2005-01-01

    This paper evaluates the quality of two major types of Web resources for K-12 education --information for research, and interactive applications for teaching and learning. It discusses an evaluation on the quality of 1,025 pieces of Web information (articles, research reports, news, and statistics) and 900 Web applications (tutorials, drills,…

  19. DW3 Classical Music Resources: Managing Mozart on the Web.

    ERIC Educational Resources Information Center

    Fineman, Yale

    2001-01-01

    Discusses the development of DW3 (Duke World Wide Web) Classical Music Resources, a vertical portal that comprises the most comprehensive collection of classical music resources on the Web with links to more than 2800 non-commercial pages/sites in over a dozen languages. Describes the hierarchical organization of subject headings and considers…

  20. Warming and Resource Availability Shift Food Web Structure and Metabolism

    PubMed Central

    O'Connor, Mary I.; Piehler, Michael F.; Leech, Dina M.; Anton, Andrea; Bruno, John F.

    2009-01-01

    Climate change disrupts ecological systems in many ways. Many documented responses depend on species' life histories, contributing to the view that climate change effects are important but difficult to characterize generally. However, systematic variation in metabolic effects of temperature across trophic levels suggests that warming may lead to predictable shifts in food web structure and productivity. We experimentally tested the effects of warming on food web structure and productivity under two resource supply scenarios. Consistent with predictions based on universal metabolic responses to temperature, we found that warming strengthened consumer control of primary production when resources were augmented. Warming shifted food web structure and reduced total biomass despite increases in primary productivity in a marine food web. In contrast, at lower resource levels, food web production was constrained at all temperatures. These results demonstrate that small temperature changes could dramatically shift food web dynamics and provide a general, species-independent mechanism for ecological response to environmental temperature change. PMID:19707271

  1. Web resources for model organism studies.

    PubMed

    Tang, Bixia; Wang, Yanqing; Zhu, Junwei; Zhao, Wenming

    2015-02-01

    An ever-growing number of resources on model organisms have emerged with the continued development of sequencing technologies. In this paper, we review 13 databases of model organisms, most of which are reported by the National Institutes of Health of the United States (NIH; http://www.nih.gov/science/models/). We provide a brief description for each database, as well as detail its data source and types, functions, tools, and availability of access. In addition, we also provide a quality assessment about these databases. Significantly, the organism databases instituted in the early 1990s--such as the Mouse Genome Database (MGD), Saccharomyces Genome Database (SGD), and FlyBase--have developed into what are now comprehensive, core authority resources. Furthermore, all of the databases mentioned here update continually according to user feedback and with advancing technologies. PMID:25707592

  2. A resource-oriented architecture for a Geospatial Web

    NASA Astrophysics Data System (ADS)

    Mazzetti, Paolo; Nativi, Stefano

    2010-05-01

    In this presentation we discuss some architectural issues on the design of an architecture for a Geospatial Web, that is an information system for sharing geospatial resources according to the Web paradigm. The success of the Web in building a multi-purpose information space, has raised questions about the possibility of adopting the same approach for systems dedicated to the sharing of more specific resources, such as the geospatial information, that is information characterized by spatial/temporal reference. To this aim an investigation on the nature of the Web and on the validity of its paradigm for geospatial resources is required. The Web was born in the early 90's to provide "a shared information space through which people and machines could communicate" [Berners-Lee 1996]. It was originally built around a small set of specifications (e.g. URI, HTTP, HTML, etc.); however, in the last two decades several other technologies and specifications have been introduced in order to extend its capabilities. Most of them (e.g. the SOAP family) actually aimed to transform the Web in a generic Distributed Computing Infrastructure. While these efforts were definitely successful enabling the adoption of service-oriented approaches for machine-to-machine interactions supporting complex business processes (e.g. for e-Government and e-Business applications), they do not fit in the original concept of the Web. In the year 2000, R. T. Fielding, one of the designers of the original Web specifications, proposes a new architectural style for distributed systems, called REST (Representational State Transfer), aiming to capture the fundamental characteristics of the Web as it was originally conceived [Fielding 2000]. In this view, the nature of the Web lies not so much in the technologies, as in the way they are used. Maintaining the Web architecture conform to the REST style would then assure the scalability, extensibility and low entry barrier of the original Web. On the contrary

  3. Scouting the Web for Science Resources

    ERIC Educational Resources Information Center

    Schrock, Kathy

    2006-01-01

    Each type of Web site can be easily located if teachers understand a few basics about the different types of information found on the Net. This article provides useful tips to science teachers on how to search the Web and where to find the following information: (1) Ready-Reference Sources (2) Current Events Sources; (3) Science Lesson Plans; (4)…

  4. Publicizing Your Web Resources for Maximum Exposure.

    ERIC Educational Resources Information Center

    Smith, Kerry J.

    2001-01-01

    Offers advice to librarians for marketing their Web sites on Internet search engines. Advises against relying solely on spiders and recommends adding metadata to the source code and delivering that information directly to the search engines. Gives an overview of metadata and typical coding for meta tags. Includes Web addresses for a number of…

  5. A resource-oriented architecture for a Geospatial Web

    NASA Astrophysics Data System (ADS)

    Mazzetti, Paolo; Nativi, Stefano

    2010-05-01

    In this presentation we discuss some architectural issues on the design of an architecture for a Geospatial Web, that is an information system for sharing geospatial resources according to the Web paradigm. The success of the Web in building a multi-purpose information space, has raised questions about the possibility of adopting the same approach for systems dedicated to the sharing of more specific resources, such as the geospatial information, that is information characterized by spatial/temporal reference. To this aim an investigation on the nature of the Web and on the validity of its paradigm for geospatial resources is required. The Web was born in the early 90's to provide "a shared information space through which people and machines could communicate" [Berners-Lee 1996]. It was originally built around a small set of specifications (e.g. URI, HTTP, HTML, etc.); however, in the last two decades several other technologies and specifications have been introduced in order to extend its capabilities. Most of them (e.g. the SOAP family) actually aimed to transform the Web in a generic Distributed Computing Infrastructure. While these efforts were definitely successful enabling the adoption of service-oriented approaches for machine-to-machine interactions supporting complex business processes (e.g. for e-Government and e-Business applications), they do not fit in the original concept of the Web. In the year 2000, R. T. Fielding, one of the designers of the original Web specifications, proposes a new architectural style for distributed systems, called REST (Representational State Transfer), aiming to capture the fundamental characteristics of the Web as it was originally conceived [Fielding 2000]. In this view, the nature of the Web lies not so much in the technologies, as in the way they are used. Maintaining the Web architecture conform to the REST style would then assure the scalability, extensibility and low entry barrier of the original Web. On the contrary

  6. Building Sustainable Collections of Free Third-Party Web Resources.

    ERIC Educational Resources Information Center

    Pitschmann, Louis A.

    The purpose of this report is to identify and synthesize existing practices used in developing collections of free third-party Internet resources that support higher education and research. A review of these practices and the projects they support confirms that developing collections of free Web resources is a process that requires its own set of…

  7. Applying Semantic Web technologies to improve the retrieval, credibility and use of health-related web resources.

    PubMed

    Mayer, Miguel A; Karampiperis, Pythagoras; Kukurikos, Antonis; Karkaletsis, Vangelis; Stamatakis, Kostas; Villarroel, Dagmar; Leis, Angela

    2011-06-01

    The number of health-related websites is increasing day-by-day; however, their quality is variable and difficult to assess. Various "trust marks" and filtering portals have been created in order to assist consumers in retrieving quality medical information. Consumers are using search engines as the main tool to get health information; however, the major problem is that the meaning of the web content is not machine-readable in the sense that computers cannot understand words and sentences as humans can. In addition, trust marks are invisible to search engines, thus limiting their usefulness in practice. During the last five years there have been different attempts to use Semantic Web tools to label health-related web resources to help internet users identify trustworthy resources. This paper discusses how Semantic Web technologies can be applied in practice to generate machine-readable labels and display their content, as well as to empower end-users by providing them with the infrastructure for expressing and sharing their opinions on the quality of health-related web resources.

  8. SAS- Semantic Annotation Service for Geoscience resources on the web

    NASA Astrophysics Data System (ADS)

    Elag, M.; Kumar, P.; Marini, L.; Li, R.; Jiang, P.

    2015-12-01

    There is a growing need for increased integration across the data and model resources that are disseminated on the web to advance their reuse across different earth science applications. Meaningful reuse of resources requires semantic metadata to realize the semantic web vision for allowing pragmatic linkage and integration among resources. Semantic metadata associates standard metadata with resources to turn them into semantically-enabled resources on the web. However, the lack of a common standardized metadata framework as well as the uncoordinated use of metadata fields across different geo-information systems, has led to a situation in which standards and related Standard Names abound. To address this need, we have designed SAS to provide a bridge between the core ontologies required to annotate resources and information systems in order to enable queries and analysis over annotation from a single environment (web). SAS is one of the services that are provided by the Geosematnic framework, which is a decentralized semantic framework to support the integration between models and data and allow semantically heterogeneous to interact with minimum human intervention. Here we present the design of SAS and demonstrate its application for annotating data and models. First we describe how predicates and their attributes are extracted from standards and ingested in the knowledge-base of the Geosemantic framework. Then we illustrate the application of SAS in annotating data managed by SEAD and annotating simulation models that have web interface. SAS is a step in a broader approach to raise the quality of geoscience data and models that are published on the web and allow users to better search, access, and use of the existing resources based on standard vocabularies that are encoded and published using semantic technologies.

  9. Risk markers for disappearance of pediatric Web resources

    PubMed Central

    Hernández-Borges, Angel A.; Jiménez-Sosa, Alejandro; Torres-Álvarez de Arcaya, Maria L.; Macías-Cervi, Pablo; Gaspar-Guardado, Maria A.; Ruíz-Rabaza, Ana

    2005-01-01

    Objectives: The authors sought to find out whether certain Webometric indexes of a sample of pediatric Web resources, and some tests based on them, could be helpful predictors of their disappearance. Methods: The authors performed a retrospective study of a sample of 363 pediatric Websites and pages they had followed for 4 years. Main measurements included: number of resources that disappeared, number of inbound links and their annual increment, average daily visits to the resources in the sample, sample compliance with the quality criteria of 3 international organizations, and online time of the Web resources. Results: On average, 11% of the sample disappeared annually. However, 13% of these were available again at the end of follow up. Disappearing and surviving Websites did not show differences in the variables studied. However, surviving Web pages had a higher number of inbound links and higher annual increment in inbound links. Similarly, Web pages that survived showed higher compliance with recognized sets of quality criteria than those that disappeared. A subset of 14 quality criteria whose compliance accounted for 90% of the probability of online permanence was identified. Finally, a progressive increment of inbound links was found to be a marker of good prognosis, showing high specificity and positive predictive value (88% and 94%, respectively). Conclusions: The number of inbound links and annual increment of inbound links could be useful markers of the permanence probability for pediatric Web pages. Strategies that assure the Web editors' awareness of their Web resources' popularity could stimulate them to improve the quality of their Websites. PMID:16059427

  10. A resource oriented webs service for environmental modeling

    NASA Astrophysics Data System (ADS)

    Ferencik, Ioan

    2013-04-01

    Environmental modeling is a largely adopted practice in the study of natural phenomena. Environmental models can be difficult to build and use and thus sharing them within the community is an important aspect. The most common approach to share a model is to expose it as a web service. In practice the interaction with this web service is cumbersome due to lack of standardized contract and the complexity of the model being exposed. In this work we investigate the use of a resource oriented approach in exposing environmental models as web services. We view a model as a layered resource build atop the object concept from Object Oriented Programming, augmented with persistence capabilities provided by an embedded object database to keep track of its state and implementing the four basic principles of resource oriented architectures: addressability, statelessness, representation and uniform interface. For implementation we use exclusively open source software: Django framework, dyBase object oriented database and Python programming language. We developed a generic framework of resources structured into a hierarchy of types and consequently extended this typology with recurses specific to the domain of environmental modeling. To test our web service we used cURL, a robust command-line based web client.

  11. Functional Requirements for Information Resource Provenance on the Web

    SciTech Connect

    McCusker, James P.; Lebo, Timothy; Graves, Alvaro; Difranzo, Dominic; Pinheiro da Silva, Paulo; McGuinness, Deborah L.

    2012-06-19

    We provide a means to formally explain the relationship between HTTP URLs and the representations returned when they are requested. According to existing World Wide Web architecture, the URL serves as an identier for a semiotic referent while the document returned via HTTP serves as a representation of the same referent. This begins with two sides of a semiotic triangle; the third side is the relationship between the URL and the representation received. We complete this description by extending the library science resource model Functional Requirements for Bibliographic Resources (FRBR) with cryptographic message and content digests to create a Functional Requirements for Information Resources (FRIR). We show how applying the FRIR model to HTTP GET and POST transactions disambiguates the many relationships between a given URL and all representations received from its request, provides fine-grained explanations that are complementary to existing explanations of web resources, and integrates easily into the emerging W3C provenance standard.

  12. Selective Archiving of Web Resources: A Study of Processing Costs

    ERIC Educational Resources Information Center

    Willer, Mirna; Buzina, Tanja; Holub, Karolina; Zajec, Jasenka; Milinovic, Miroslav; Topolscak, Nebojsa

    2008-01-01

    Purpose: The purpose of this paper is to assess costs in the National and University Library of Croatia for processing Croatian web resources and the maintenance and development of the service, and to analyse the present organisation and workflow of their processing, and to propose improvements. Design/methodology/approach: The assessment period…

  13. Faculty Views of Open Web Resource Use by College Students

    ERIC Educational Resources Information Center

    Tomaiuolo, Nicholas G.

    2005-01-01

    This article assesses both the extent of students' use of open Web resources and library subscription databases and professors' satisfaction with that use as reported by a survey of 120 community college and university English faculty. It was concluded that although library budgets allocate significant funds to offer subscription databases,…

  14. Development of a web application for water resources based on open source software

    NASA Astrophysics Data System (ADS)

    Delipetrev, Blagoj; Jonoski, Andreja; Solomatine, Dimitri P.

    2014-01-01

    This article presents research and development of a prototype web application for water resources using latest advancements in Information and Communication Technologies (ICT), open source software and web GIS. The web application has three web services for: (1) managing, presenting and storing of geospatial data, (2) support of water resources modeling and (3) water resources optimization. The web application is developed using several programming languages (PhP, Ajax, JavaScript, Java), libraries (OpenLayers, JQuery) and open source software components (GeoServer, PostgreSQL, PostGIS). The presented web application has several main advantages: it is available all the time, it is accessible from everywhere, it creates a real time multi-user collaboration platform, the programing languages code and components are interoperable and designed to work in a distributed computer environment, it is flexible for adding additional components and services and, it is scalable depending on the workload. The application was successfully tested on a case study with concurrent multi-users access.

  15. StreamStats: A Water Resources Web Application

    USGS Publications Warehouse

    Ries, Kernell G.; Guthrie, John G.; Rea, Alan H.; Steeves, Peter A.; Stewart, David W.

    2008-01-01

    . Streamflow measurements are collected systematically over a period of years at partial-record stations to estimate peak-flow or low-flow statistics. Streamflow measurements usually are collected at miscellaneous-measurement stations for specific hydrologic studies with various objectives. StreamStats is a Web-based Geographic Information System (GIS) application (fig. 1) that was created by the USGS, in cooperation with Environmental Systems Research Institute, Inc. (ESRI)1, to provide users with access to an assortment of analytical tools that are useful for water-resources planning and management. StreamStats functionality is based on ESRI's ArcHydro Data Model and Tools, described on the Web at http://support.esri.com/index.cfm?fa=downloads.dataModels.filteredGateway&dmid=15. StreamStats allows users to easily obtain streamflow statistics, basin characteristics, and descriptive information for USGS data-collection stations and user-selected ungaged sites. It also allows users to identify stream reaches that are upstream and downstream from user-selected sites, and to identify and obtain information for locations along the streams where activities that may affect streamflow conditions are occurring. This functionality can be accessed through a map-based user interface that appears in the user's Web browser (fig. 1), or individual functions can be requested remotely as Web services by other Web or desktop computer applications. StreamStats can perform these analyses much faster than historically used manual techniques. StreamStats was designed so that each state would be implemented as a separate application, with a reliance on local partnerships to fund the individual applications, and a goal of eventual full national implementation. Idaho became the first state to implement StreamStats in 2003. By mid-2008, 14 states had applications available to the public, and 18 other states were in various stages of implementation.

  16. openSNP–A Crowdsourced Web Resource for Personal Genomics

    PubMed Central

    Greshake, Bastian; Bayer, Philipp E.; Rausch, Helge; Reda, Julia

    2014-01-01

    Genome-Wide Association Studies are widely used to correlate phenotypic traits with genetic variants. These studies usually compare the genetic variation between two groups to single out certain Single Nucleotide Polymorphisms (SNPs) that are linked to a phenotypic variation in one of the groups. However, it is necessary to have a large enough sample size to find statistically significant correlations. Direct-To-Consumer (DTC) genetic testing can supply additional data: DTC-companies offer the analysis of a large amount of SNPs for an individual at low cost without the need to consult a physician or geneticist. Over 100,000 people have already been genotyped through Direct-To-Consumer genetic testing companies. However, this data is not public for a variety of reasons and thus cannot be used in research. It seems reasonable to create a central open data repository for such data. Here we present the web platform openSNP, an open database which allows participants of Direct-To-Consumer genetic testing to publish their genetic data at no cost along with phenotypic information. Through this crowdsourced effort of collecting genetic and phenotypic information, openSNP has become a resource for a wide area of studies, including Genome-Wide Association Studies. openSNP is hosted at http://www.opensnp.org, and the code is released under MIT-license at http://github.com/gedankenstuecke/snpr. PMID:24647222

  17. Internet resources and web pages for pediatric surgeons.

    PubMed

    Lugo-Vicente, H

    2000-02-01

    The Internet, the largest network of connected computers, provides immediate, dynamic, and downloadable information. By re-architecturing the work place and becoming familiar with Internet resources, pediatric surgeons have anticipated the informatics capabilities of this computer-based technology creating a new vision of work and organization in such areas as patient care, teaching, and research. This review aims to highlight how Internet navigational technology can be a useful educational resource in pediatric surgery, examines web pages of interest, and defines ideas of network communication. Basic Internet resources are electronic mail, discussion groups, file transfer, and the Worldwide Web (WWW). Electronic mailing is the most useful resource extending the avenue of learning to an international audience through news or list-servers groups. Pediatric Surgery List Server, the most popular discussion group, is a constant forum for exchange of ideas, difficult cases, consensus on management, and development of our specialty. The WWW provides an all-in-one medium of text, image, sound, and video. Associations, departments, educational sites, organizations, peer-reviewed scientific journals and Medline database web pages of prime interest to pediatric surgeons have been developing at an amazing pace. Future developments of technological advance nurturing our specialty will consist of online journals, telemedicine, international chatting, computer-based training for surgical education, and centralization of cyberspace information into database search sites.

  18. Production scheduling with discrete and renewable additional resources

    NASA Astrophysics Data System (ADS)

    Kalinowski, K.; Grabowik, C.; Paprocka, I.; Kempa, W.

    2015-11-01

    In this paper an approach to planning of additional resources when scheduling operations are discussed. The considered resources are assumed to be discrete and renewable. In most research in scheduling domain, the basic and often the only type of regarded resources is a workstation. It can be understood as a machine, a device or even as a separated space on the shop floor. In many cases, during the detailed scheduling of operations the need of using more than one resource, required for its implementation, can be indicated. Resource requirements for an operation may relate to different resources or resources of the same type. Additional resources are most often referred to these human resources, tools or equipment, for which the limited availability in the manufacturing system may have an influence on the execution dates of some operations. In the paper the concept of the division into basic and additional resources and their planning method was shown. A situation in which sets of basic and additional resources are not separable - the same additional resource may be a basic resource for another operation is also considered. Scheduling of operations, including greater amount of resources can cause many difficulties, depending on whether the resource is involved in the entire time of operation, only in the selected part(s) of operation (e.g. as auxiliary staff at setup time) or cyclic - e.g. when an operator supports more than one machine, or supervises the execution of several operations. For this reason the dates and work times of resources participation in the operation can be different. Presented issues are crucial when modelling of production scheduling environment and designing of structures for the purpose of scheduling software development.

  19. Human exposure assessment resources on the World Wide Web.

    PubMed

    Schwela, Dieter; Hakkinen, Pertti J

    2004-05-20

    Human exposure assessment is frequently noted as a weak link and bottleneck in the risk assessment process. Fortunately, the World Wide Web and Internet are providing access to numerous valuable sources of human exposure assessment-related information, along with opportunities for information exchange. Internet mailing lists are available as potential online help for exposure assessment questions, e.g. RISKANAL has several hundred members from numerous countries. Various Web sites provide opportunities for training, e.g. Web sites offering general human exposure assessment training include two from the US Environmental Protection Agency (EPA) and four from the US National Library of Medicine. Numerous other Web sites offer access to a wide range of exposure assessment information. For example, the (US) Alliance for Chemical Awareness Web site addresses direct and indirect human exposures, occupational exposures and ecological exposure assessments. The US EPA's Exposure Factors Program Web site provides a focal point for current information and data on exposure factors relevant to the United States. In addition, the International Society of Exposure Analysis Web site provides information about how this society seeks to foster and advance the science of exposure analysis. A major opportunity exists for risk assessors and others to broaden the level of exposure assessment information available via Web sites. Broadening the Web's exposure information could include human exposure factors-related information about country- or region-specific ranges in body weights, drinking water consumption, etc. along with residential factors-related information on air changeovers per hour in various types of residences. Further, country- or region-specific ranges on how various tasks are performed by various types of consumers could be collected and provided. Noteworthy are that efforts are underway in Europe to develop a multi-country collection of exposure factors and the European

  20. Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.

    PubMed

    Glanville, Jake Gunn; Kirshner, Dan; Krishnamurthy, Nandini; Sjölander, Kimmen

    2007-07-01

    Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein molecular function. The Berkeley Phylogenomics Group provides a series of web servers for phylogenomic analysis: classification of sequences to pre-computed families and subfamilies using the PhyloFacts Phylogenomic Encyclopedia, FlowerPower clustering of proteins sharing the same domain architecture, MUSCLE multiple sequence alignment, SATCHMO simultaneous alignment and tree construction and SCI-PHY subfamily identification. The PhyloBuilder web server provides an integrated phylogenomic pipeline starting with a user-supplied protein sequence, proceeding to homolog identification, multiple alignment, phylogenetic tree construction, subfamily identification and structure prediction. The Berkeley Phylogenomics Group resources are available at http://phylogenomics.berkeley.edu.

  1. Managing Urban School System Resources: New Procedures, Addition Actors.

    ERIC Educational Resources Information Center

    Hentschke, Guilbert C.

    In recent years urban school systems have had to face unusually severe economic constraints. In the process of adjusting to these constraints, urban systems will likely seek new ways to reallocate existing resources and will undertake more cooperative ventures with other organizational entities to gain access to additional resources. Four…

  2. Use of Web Resources in the Journal Literature 2001 and 2007: A Cross-Disciplinary Study

    ERIC Educational Resources Information Center

    Zhang, Li

    2011-01-01

    This article examines Web resources in research articles from 30 scholarly journals in disciplines across the sciences, social sciences, and humanities. The purpose of the study is to report the degree to which scholars make use of Web-based resources in the journal literature and to identify Web citation characteristics within different subject…

  3. Robustness of empirical food webs with varying consumer's sensitivities to loss of resources.

    PubMed

    Bellingeri, Michele; Vincenzi, Simone

    2013-09-21

    Food web responses to species loss have been mostly studied in binary food webs, thus without accounting for the amount of energy transferred in consumer-resource interactions. We introduce an energetic criterion, called extinction threshold, for which a species goes secondarily extinct when a certain fraction of its incoming energy is lost. We study the robustness to random node loss of 10 food webs based on empirically-derived weightings. We use different extinction scenarios (random removal and from most- to least-connected species), and we simulate 10(5) replicates for each extinction threshold to account for stochasticity of extinction dynamics. We quantified robustness on the basis of how many additional species (i.e. secondary extinctions) were lost after the direct removal of species (i.e. primary extinctions). For all food webs, the expected robustness linearly decreases with extinction threshold, although a large variance in robustness is observed. The sensitivity of robustness to variations in extinction threshold increases with food web species richness and quantitative unweighted link density, while we observed a nonlinear relationship when the predictor is food web connectance and no relationship with the proportion of autotrophs.

  4. Matrix market: a web resource for test matrix collection

    SciTech Connect

    Boisvert, R.F.; Pozo, R.; Remington, K.; Barrett, R.F.; Dongarra, J.J. /

    1996-05-30

    We describe a repository of data for the testing of numerical algorithms and mathematical software for matrix computations. The repository is designed to accommodate both dense and sparse matrices, as well as software to generate matrices. It has been seeded with the well known Harwell-Boeing sparse matrix collection. The raw data files have been augmented with an integrated World Wide Web interface which describes the matrices in the collection quantitatively and visually, For example, each matrix has a Web page which details its attributes, graphically depicts its sparsity pattern, and provides access to the matrix itself in several formats. In addition, a search mechanism is included which allows retrieval of matrices based on a variety of attributes, such as type and size, as well as through free-text search in abstracts. The URL is http://math.nist.gov/MatrixMarket.

  5. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature.

    PubMed

    Ozyurt, Ibrahim Burak; Grethe, Jeffrey S; Martone, Maryann E; Bandrowski, Anita E

    2016-01-01

    The NIF Registry developed and maintained by the Neuroscience Information Framework is a cooperative project aimed at cataloging research resources, e.g., software tools, databases and tissue banks, funded largely by governments and available as tools to research scientists. Although originally conceived for neuroscience, the NIF Registry has over the years broadened in the scope to include research resources of general relevance to biomedical research. The current number of research resources listed by the Registry numbers over 13K. The broadening in scope to biomedical science led us to re-christen the NIF Registry platform as SciCrunch. The NIF/SciCrunch Registry has been cataloging the resource landscape since 2006; as such, it serves as a valuable dataset for tracking the breadth, fate and utilization of these resources. Our experience shows research resources like databases are dynamic objects, that can change location and scope over time. Although each record is entered manually and human-curated, the current size of the registry requires tools that can aid in curation efforts to keep content up to date, including when and where such resources are used. To address this challenge, we have developed an open source tool suite, collectively termed RDW: Resource Disambiguator for the (Web). RDW is designed to help in the upkeep and curation of the registry as well as in enhancing the content of the registry by automated extraction of resource candidates from the literature. The RDW toolkit includes a URL extractor from papers, resource candidate screen, resource URL change tracker, resource content change tracker. Curators access these tools via a web based user interface. Several strategies are used to optimize these tools, including supervised and unsupervised learning algorithms as well as statistical text analysis. The complete tool suite is used to enhance and maintain the resource registry as well as track the usage of individual resources through an

  6. Fertilizer addition lessens the flux of microbial carbon to higher trophic levels in soil food webs of grassland.

    PubMed

    Lemanski, Kathleen; Scheu, Stefan

    2014-10-01

    Roots and root-derived C compounds are increasingly recognised as important resources for soil animal food webs. We used (13)C-labelled glucose as a model C compound representing root exudates to follow the incorporation of root-derived C into the soil animal food web of a temperate grassland over a period of 52 weeks. We investigated variations in glucose C incorporation with fertilizer addition and sward composition, i.e. variations in plant functional groups. The approach allowed the differentiation of trophic chains based on primary decomposers feeding on litter and phytophagous species feeding on roots (i.e. not incorporating glucose C) from those based on secondary decomposers feeding on microorganisms (thereby assimilating glucose C). Each of the studied soil animal species incorporated glucose C, indicating that the majority of grassland soil animal species rely on microorganisms as food resources with microorganisms being fuelled by root exudates. However, incorporation of glucose C into soil animal species varied markedly with species identity, suggesting that detritivorous microarthropods complement each other in channelling microbial C through soil food webs. Fertilizer addition markedly reduced the concentration of glucose C in most soil animal species as well as the absolute transfer of glucose C into oribatid mites as major secondary decomposers. The results suggest that fertilizer addition shifts the basis of the decomposer food web towards the use of unlabelled resources, presumably roots, i.e. towards a herbivore system, thereby lessening the link between microorganisms and microbial grazers and hampering the propagation of microbial C to higher trophic levels.

  7. Developing Web-Based Education Resources: Lessons Learned from Three Experiences.

    ERIC Educational Resources Information Center

    Carr, Jo Ann

    2002-01-01

    Reviews the development of three Web-based education resources and the potential for each to meet the needs of users. Describes the Annotated List of Education Journals, the IDEAS Portal Web Site, and the Eisenhower National Clearinghouse Web Site and discusses the purpose, audience, content, funding, publicity, and structure of the sites.…

  8. Finding Rural Development Resources on the World Wide Web: Tips and Techniques for Efficient Searches.

    ERIC Educational Resources Information Center

    Stierman, Jeanne Koekkoek

    This guide presents basic information on searching the World Wide Web and lists selected Web sites and links to resources that contain information on rural development. The guide describes and differentiates among search engines, Web directories, metacrawlers, and mutations. Searching tips include: using quotation marks around phrases; using plus…

  9. Human Resource Regulation and Legal Issues: Web Sites for Instructional and Training Development

    ERIC Educational Resources Information Center

    Kohl, John; Mayfield, Milton; Mayfield, Jacqueline

    2004-01-01

    In this article, the authors present a set of useful Web sites for enhancing and supplementing human resource courses and training programs, especially those that deal with the legal and regulatory aspects of the human resources (HR) function. These Web sites provide valuable information on pertinent HR compliance issues as well as information…

  10. MOWServ: a web client for integration of bioinformatic resources

    PubMed Central

    Ramírez, Sergio; Muñoz-Mérida, Antonio; Karlsson, Johan; García, Maximiliano; Pérez-Pulido, Antonio J.; Claros, M. Gonzalo; Trelles, Oswaldo

    2010-01-01

    The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was released to provide integrated access to databases and analytical tools. Since its release, the number of available services has grown dramatically, and it has become one of the main contributors of registered services in the EMBRACE Biocatalogue. The ontology that enables most of the web-service compatibility has been curated, improved and extended. The service discovery has been greatly enhanced by Magallanes software and biodataSF. User data are securely stored on the main server by an authentication protocol that enables the monitoring of current or already-finished user’s tasks, as well as the pipelining of successive data processing services. The BioMoby standard has been greatly extended with the new features included in the MOWServ, such as management of additional information (metadata such as extended descriptions, keywords and datafile examples), a qualified registry, error handling, asynchronous services and service replication. All of them have increased the MOWServ service quality, usability and robustness. MOWServ is available at http://www.inab.org/MOWServ/ and has a mirror at http://www.bitlab-es.com/MOWServ/. PMID:20525794

  11. MOWServ: a web client for integration of bioinformatic resources.

    PubMed

    Ramírez, Sergio; Muñoz-Mérida, Antonio; Karlsson, Johan; García, Maximiliano; Pérez-Pulido, Antonio J; Claros, M Gonzalo; Trelles, Oswaldo

    2010-07-01

    The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was released to provide integrated access to databases and analytical tools. Since its release, the number of available services has grown dramatically, and it has become one of the main contributors of registered services in the EMBRACE Biocatalogue. The ontology that enables most of the web-service compatibility has been curated, improved and extended. The service discovery has been greatly enhanced by Magallanes software and biodataSF. User data are securely stored on the main server by an authentication protocol that enables the monitoring of current or already-finished user's tasks, as well as the pipelining of successive data processing services. The BioMoby standard has been greatly extended with the new features included in the MOWServ, such as management of additional information (metadata such as extended descriptions, keywords and datafile examples), a qualified registry, error handling, asynchronous services and service replication. All of them have increased the MOWServ service quality, usability and robustness. MOWServ is available at http://www.inab.org/MOWServ/ and has a mirror at http://www.bitlab-es.com/MOWServ/.

  12. MOWServ: a web client for integration of bioinformatic resources.

    PubMed

    Ramírez, Sergio; Muñoz-Mérida, Antonio; Karlsson, Johan; García, Maximiliano; Pérez-Pulido, Antonio J; Claros, M Gonzalo; Trelles, Oswaldo

    2010-07-01

    The productivity of any scientist is affected by cumbersome, tedious and time-consuming tasks that try to make the heterogeneous web services compatible so that they can be useful in their research. MOWServ, the bioinformatic platform offered by the Spanish National Institute of Bioinformatics, was released to provide integrated access to databases and analytical tools. Since its release, the number of available services has grown dramatically, and it has become one of the main contributors of registered services in the EMBRACE Biocatalogue. The ontology that enables most of the web-service compatibility has been curated, improved and extended. The service discovery has been greatly enhanced by Magallanes software and biodataSF. User data are securely stored on the main server by an authentication protocol that enables the monitoring of current or already-finished user's tasks, as well as the pipelining of successive data processing services. The BioMoby standard has been greatly extended with the new features included in the MOWServ, such as management of additional information (metadata such as extended descriptions, keywords and datafile examples), a qualified registry, error handling, asynchronous services and service replication. All of them have increased the MOWServ service quality, usability and robustness. MOWServ is available at http://www.inab.org/MOWServ/ and has a mirror at http://www.bitlab-es.com/MOWServ/. PMID:20525794

  13. ENDEAVOUR update: a web resource for gene prioritization in multiple species.

    PubMed

    Tranchevent, Léon-Charles; Barriot, Roland; Yu, Shi; Van Vooren, Steven; Van Loo, Peter; Coessens, Bert; De Moor, Bart; Aerts, Stein; Moreau, Yves

    2008-07-01

    Endeavour (http://www.esat.kuleuven.be/endeavourweb; this web site is free and open to all users and there is no login requirement) is a web resource for the prioritization of candidate genes. Using a training set of genes known to be involved in a biological process of interest, our approach consists of (i) inferring several models (based on various genomic data sources), (ii) applying each model to the candidate genes to rank those candidates against the profile of the known genes and (iii) merging the several rankings into a global ranking of the candidate genes. In the present article, we describe the latest developments of Endeavour. First, we provide a web-based user interface, besides our Java client, to make Endeavour more universally accessible. Second, we support multiple species: in addition to Homo sapiens, we now provide gene prioritization for three major model organisms: Mus musculus, Rattus norvegicus and Caenorhabditis elegans. Third, Endeavour makes use of additional data sources and is now including numerous databases: ontologies and annotations, protein-protein interactions, cis-regulatory information, gene expression data sets, sequence information and text-mining data. We tested the novel version of Endeavour on 32 recent disease gene associations from the literature. Additionally, we describe a number of recent independent studies that made use of Endeavour to prioritize candidate genes for obesity and Type II diabetes, cleft lip and cleft palate, and pulmonary fibrosis. PMID:18508807

  14. A Web Site that Provides Resources for Assessing Students' Statistical Literacy, Reasoning and Thinking

    ERIC Educational Resources Information Center

    Garfield, Joan; delMas, Robert

    2010-01-01

    The Assessment Resource Tools for Improving Statistical Thinking (ARTIST) Web site was developed to provide high-quality assessment resources for faculty who teach statistics at the tertiary level but resources are also useful to statistics teachers at the secondary level. This article describes some of the numerous ARTIST resources and suggests…

  15. Usability Testing for e-Resource Discovery: How Students Find and Choose e-Resources Using Library Web Sites

    ERIC Educational Resources Information Center

    Fry, Amy; Rich, Linda

    2011-01-01

    In early 2010, library staff at Bowling Green State University (BGSU) in Ohio designed and conducted a usability study of key parts of the library web site, focusing on the web pages generated by the library's electronic resources management system (ERM) that list and describe the library's databases. The goal was to discover how users find and…

  16. The ESRC: A Web-based Environmental Satellite Resource Center

    NASA Astrophysics Data System (ADS)

    Abshire, W. E.; Guarente, B.; Dills, P. N.

    2009-12-01

    The COMET® Program has developed an Environmental Satellite Resource Center (known as the ESRC), a searchable, database-driven Website that provides easy access to a wide range of useful information training materials on polar-orbiting and geostationary satellites. Primarily sponsored by the NPOESS Program and NOAA, the ESRC is a tool for users seeking reliable sources of satellite information, training, and data. First published in September 2008, and upgraded in April 2009, the site is freely available at: http://www.meted.ucar.edu/esrc. Additional contributions to the ESRC are sought and made on an ongoing basis. The ESRC was created in response to a broad community request first made in May 2006. The COMET Program was asked to develop the site to consolidate and simplify access to reliable, current, and diverse information, training materials, and data associated with environmental satellites. The ESRC currently includes over 400 significant resources from NRL, CIMSS, CIRA, NASA, VISIT, NESDIS, and EUMETSAT, and improves access to the numerous satellite resources available from COMET’s MetEd Website. The ESRC is designed as a community site where organizations and individuals around the globe can easily submit their resources via online forms by providing a small set of metadata. The ESRC supports languages other than English and multi-lingual character sets have been tested. COMET’s role is threefold: 1) maintain the site, 2) populate it with our own materials, including smaller, focused learning objects derived from our larger training modules, and 3) provide the necessary quality assurance and monitoring to ensure that all resources are appropriate and well described before being made available. Our presentation will demonstrate many of the features and functionality of searching for resources using the ESRC, and will outline the steps for users to make their own submissions. For the site to reach its full potential, submissions representing diverse

  17. Towards pathogenomics: a web-based resource for pathogenicity islands.

    PubMed

    Yoon, Sung Ho; Park, Young-Kyu; Lee, Soohyun; Choi, Doil; Oh, Tae Kwang; Hur, Cheol-Goo; Kim, Jihyun F

    2007-01-01

    Pathogenicity islands (PAIs) are genetic elements whose products are essential to the process of disease development. They have been horizontally (laterally) transferred from other microbes and are important in evolution of pathogenesis. In this study, a comprehensive database and search engines specialized for PAIs were established. The pathogenicity island database (PAIDB) is a comprehensive relational database of all the reported PAIs and potential PAI regions which were predicted by a method that combines feature-based analysis and similarity-based analysis. Also, using the PAI Finder search application, a multi-sequence query can be analyzed onsite for the presence of potential PAIs. As of April 2006, PAIDB contains 112 types of PAIs and 889 GenBank accessions containing either partial or all PAI loci previously reported in the literature, which are present in 497 strains of pathogenic bacteria. The database also offers 310 candidate PAIs predicted from 118 sequenced prokaryotic genomes. With the increasing number of prokaryotic genomes without functional inference and sequenced genetic regions of suspected involvement in diseases, this web-based, user-friendly resource has the potential to be of significant use in pathogenomics. PAIDB is freely accessible at http://www.gem.re.kr/paidb.

  18. World Wide Web resources on zoonotic infections: a subjective overview.

    PubMed

    Pappas, Georgios; Fragoulis, Konstantinos N; Falagas, Matthew E

    2008-12-01

    Zoonoses are a diverse group of infections whose significance is underestimated and understudied. The prevalence of zoonoses is higher in the developing world, where health professionals are often deprived of the rapid and free availability of related scientific information; however, continuous evolution of the World Wide Web (WWW) may offer such an option. This review sought to evaluate the content of available WWW resources on zoonoses. Two authors independently identified relevant websites. The selected websites were considered of merit upon consensus of all the authors. Only websites with freely available content were included. Websites on individual zoonoses were excluded. Through the numerous sites encountered on the WWW on zoonoses, there are certain ones that offer adequate information for the public and others that can serve as useful initiators for the non-specialist. Most sites approach zoonoses one-dimensionally, either as a public health, medical or veterinarian problem. The few sites that offer updates on zoonoses unfortunately focus on regional news. Ample information for the public and non-specialists on zoonoses can be traced on the WWW. However, what is missing is a site that will continuously update health professionals who deal with zoonoses in all their medical, veterinary and public health aspects.

  19. Adaptation and Recommendation Techniques to Improve the Quality of Annotations and the Relevance of Resources in Web 2.0 and Semantic Web-Based Applications

    NASA Astrophysics Data System (ADS)

    Torre, Ilaria

    The Web 2.0 and the Semantic Web represent different forms of evolution of the first-generation Web, and both of them enrich Web resources with semantic annotations. Recommendation and personalization of Web resources is another trend that becomes more and more important with the growth of information, and both the Web 2.0 and the Semantic Web are deeply connected to it. The objective of this paper is to analyze the contribution of recommendation and adaptation techniques to these paradigms and to investigate if these techniques can be used as a bridge for their integration. More specifically, the paper will focus on the contribution of adaptation and recommendation techniques to improve the quality of annotations in the Web 2.0, Semantic Web, and mixed approaches and the relevance of annotated resources that are retrieved or filtered to users.

  20. Addition of multiple limiting resources reduces grassland diversity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Niche dimensionality is the most general theoretical explanation for biodiversity: more niches allow for more ecological tradeoffs between species and thus greater opportunities for coexistence. Resource competition theory predicts that removing resource limitations, by increasing resource availabil...

  1. Out on the Web: The Relationship between Campus Climate and GLBT-Related Web-based Resources in Academic Libraries

    ERIC Educational Resources Information Center

    Ciszek, Matthew P.

    2011-01-01

    This article explores the relationship between the perceived campus environment for gay, lesbian, bisexual, and transgender (GLBT) students at colleges and universities and how academic libraries have deployed GLBT-related resources on the Web. Recommendations are made for increasing GLBT-related materials and information in academic libraries.…

  2. Finding and Evaluating Adult ESL Resources on the World Wide Web. ERIC Q & A.

    ERIC Educational Resources Information Center

    Florez, MaryAnn Cunningham

    One of the challenges often mentioned by users of the World Wide Web is creating and implementing successful searches on topics of interest. This article provides background information about adult English-as-a-Second-Language (ESL) resources available on the Web. It describes various search tools, explains how to create search strategies and how…

  3. The Implications of Well-Formedness on Web-Based Educational Resources.

    ERIC Educational Resources Information Center

    Mohler, James L.

    Within all institutions, Web developers are beginning to utilize technologies that make sites more than static information resources. Databases such as XML (Extensible Markup Language) and XSL (Extensible Stylesheet Language) are key technologies that promise to extend the Web beyond the "information storehouse" paradigm and provide additional…

  4. Web Accessibility and Usability of the Homepages from Academy of Human Resource Development Members' Institutions

    ERIC Educational Resources Information Center

    Zeng, Xiaoming; Sligar, Steven R.

    2008-01-01

    Human resource development programs in various institutions communicate with their constituencies including persons with disabilities through websites. Web sites need to be accessible for legal, economic and ethical reasons. We used an automated web usability evaluation tool, aDesigner, to evaluate 205 home pages from the organizations of AHRD…

  5. Web Resources for Camp Staff: Where To Look for Answers to Your Questions.

    ERIC Educational Resources Information Center

    Pavlicin, Karen M.

    1997-01-01

    The World Wide Web is a good source of quick information, which is especially helpful during the busy camping season. Among the subjects on the Web relevant to camp are horsemanship, canoeing, waterfront safety, government standards, legislative news, disabilities, youth resources, vegetarian meals, grant writing, news, and stress management.…

  6. MendelWeb: An Electronic Science/Math/History Resource for the WWW.

    ERIC Educational Resources Information Center

    Blumberg, Roger B.

    This paper describes a hypermedia resource, called MendelWeb that integrates elementary biology, discrete mathematics, and the history of science. MendelWeb is constructed from Gregor Menders 1865 paper, "Experiments in Plant Hybridization". An English translation of Mendel's paper, which is considered to mark the birth of classical and…

  7. Analysis of Science Education Reform Resources on the World Wide Web.

    ERIC Educational Resources Information Center

    Kumar, David D.; Libidinsky, Lisa J.

    2000-01-01

    A study analyzed 51 World Wide Web K-12 instructional resources using STS (Science, Technology, and Society) competencies developed from 1996 National Science Education standards. Only 12 percent of the sites have included 25 percent or more of the STS competencies, making the web's educational benefits questionable. (Contains 10 references.) (MLH)

  8. Nitrogen Addition and Warming Independently Influence the Belowground Micro-Food Web in a Temperate Steppe

    PubMed Central

    Li, Qi; Bai, Huahua; Liang, Wenju; Xia, Jianyang; Wan, Shiqiang; van der Putten, Wim H.

    2013-01-01

    Climate warming and atmospheric nitrogen (N) deposition are known to influence ecosystem structure and functioning. However, our understanding of the interactive effect of these global changes on ecosystem functioning is relatively limited, especially when it concerns the responses of soils and soil organisms. We conducted a field experiment to study the interactive effects of warming and N addition on soil food web. The experiment was established in 2006 in a temperate steppe in northern China. After three to four years (2009–2010), we found that N addition positively affected microbial biomass and negatively influenced trophic group and ecological indices of soil nematodes. However, the warming effects were less obvious, only fungal PLFA showed a decreasing trend under warming. Interestingly, the influence of N addition did not depend on warming. Structural equation modeling analysis suggested that the direct pathway between N addition and soil food web components were more important than the indirect connections through alterations in soil abiotic characters or plant growth. Nitrogen enrichment also affected the soil nematode community indirectly through changes in soil pH and PLFA. We conclude that experimental warming influenced soil food web components of the temperate steppe less than N addition, and there was little influence of warming on N addition effects under these experimental conditions. PMID:23544140

  9. Web application for simplifying access to computer center resources and information.

    2013-05-01

    Lorenz is a product of the ASC Scientific Data Management effort. Lorenz is a web-based application designed to help computer centers make information and resources more easily available to their users.

  10. Refining the Use of the Web (and Web Search) as a Language Teaching and Learning Resource

    ERIC Educational Resources Information Center

    Wu, Shaoqun; Franken, Margaret; Witten, Ian H.

    2009-01-01

    The web is a potentially useful corpus for language study because it provides examples of language that are contextualized and authentic, and is large and easily searchable. However, web contents are heterogeneous in the extreme, uncontrolled and hence "dirty," and exhibit features different from the written and spoken texts in other linguistic…

  11. 77 FR 33000 - Solicitation for a Cooperative Agreement: Resources for NIC's Web Site on Data Collection and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-04

    ... National Institute of Corrections Solicitation for a Cooperative Agreement: Resources for NIC's Web Site on... Corrections (NIC) is seeking applications for the development of resources for NIC's Web site on data.... NIC currently has some content under development on its Web site at...

  12. NLM Web Resources for Environmental Health and Biomedical Research

    SciTech Connect

    Foster, R.

    2010-09-12

    The National Library of Medicine (NLM) is sponsoring this course to increase awareness of the availability and value of NLM’s online environmental health and toxicology information resources that provide invaluable tools to address these issues—for professionals and consumers alike. Participants will receive hands-on practice with selected NLM resources, and demonstrations of other valuable resources will be provided.

  13. Science Education Resources on the Web--Spiders.

    ERIC Educational Resources Information Center

    Thirunarayanan, M. O.

    1997-01-01

    Lists Web sites containing information on spiders and offers brief descriptions of the information available at those sites. The 11 sites provide information on taxonomy of spiders, anatomy, different ways spiders use silk, Internet mailing lists, folk literature and art, bibliographies, night collection, and spiders commonly found in the state of…

  14. Search Interface Design Using Faceted Indexing for Web Resources.

    ERIC Educational Resources Information Center

    Devadason, Francis; Intaraksa, Neelawat; Patamawongjariya, Pornprapa; Desai, Kavita

    2001-01-01

    Describes an experimental system designed to organize and provide access to Web documents using a faceted pre-coordinate indexing system based on the Deep Structure Indexing System (DSIS) derived from POPSI (Postulate based Permuted Subject Indexing) of Bhattacharyya, and the facet analysis and chain indexing system of Ranganathan. (AEF)

  15. The Education Forum: A Web-Based Resource for Teachers.

    ERIC Educational Resources Information Center

    Schnackenberg, Heidi L.; Asuncion, Jennison; Rosler, Dean

    One of the issues surrounding the successful integration of technology into teaching practices is teachers' lack of time to develop or modify lesson plans, units, or curricula to incorporate technology. The Education Forum Web site, http: //education.concordia.ca/~heidi_schnackenberg/educationfo rum, developed as a project for a graduate course on…

  16. Delivering an Alternative Medicine Resource to the User's Desktop via World Wide Web.

    ERIC Educational Resources Information Center

    Li, Jie; Wu, Gang; Marks, Ellen; Fan, Weiyu

    1998-01-01

    Discusses the design and implementation of a World Wide Web-based alternative medicine virtual resource. This homepage integrates regional, national, and international resources and delivers library services to the user's desktop. Goals, structure, and organizational schemes of the system are detailed, and design issues for building such a…

  17. Using Forecasting to Predict Long-Term Resource Utilization for Web Services

    ERIC Educational Resources Information Center

    Yoas, Daniel W.

    2013-01-01

    Researchers have spent years understanding resource utilization to improve scheduling, load balancing, and system management through short-term prediction of resource utilization. Early research focused primarily on single operating systems; later, interest shifted to distributed systems and, finally, into web services. In each case researchers…

  18. Web Resources for HIV Type 1 Genotypic-Resistance Test Interpretation

    PubMed Central

    Liu, Tommy F.; Shafer, Robert W.

    2008-01-01

    Interpreting the results of plasma human immunodeficiency virus type 1 (HIV-1) genotypic drug-resistance tests is one of the most difficult tasks facing clinicians caring for HIV-1–infected patients. There are many drug-resistance mutations, and they arise in complex patterns that cause varying levels of drug resistance. In addition, HIV-1 exists in vivo as a virus population containing many genomic variants. Genotypic-resistance testing detects the drug-resistance mutations present in the most common plasma virus variants but may not detect drug-resistance mutations present in minor virus variants. Therefore, interpretation systems are necessary to determine the phenotypic and clinical significance of drug-resistance mutations found in a patient's plasma virus population. We describe the scientific principles of HIV-1 genotypic-resistance test interpretation and the most commonly used Web-based resources for clinicians ordering genotypic drug-resistance tests. PMID:16652319

  19. Research on the Status Quo and System Architecture of the Web Information Resource Evaluation

    NASA Astrophysics Data System (ADS)

    Xu, Wei; Liu, Ji; Shen, Xiangxing

    Web information resource evaluation (website evaluation) becomes more and more important, as the web information resources become larger and more complex. Thus, a lot of theory and methods have been developed to evaluate websites. In this paper, the author analyzes the primary methods applied currently in the evaluation of the web information resource and points out the main problems in this area from the perspectives of qualitative evaluation, quantitative evaluation, synthetic evaluation and automatic evaluation, after making an in-depth and comprehensive research of the literature and evaluation tools at home and abroad. Furthermore, the paper concludes that the evaluation of information resource on the Internet should take the internal and external characteristics into consideration, in the meantime, the paper puts forward a system architecture scheme of the automatic website evaluation based on the usability engineering.

  20. National Library of Medicine Web Resources for Student Health Professionals

    SciTech Connect

    Womble, R.

    2010-04-02

    Familiarize students affiliated with the Student National Medical Association with the National Library of Medicine's online resources that address medical conditions, health disparities, and public health preparedness needs.

  1. ResourceLog: An Embeddable Tool for Dynamically Monitoring the Usage of Web-Based Bioscience Resources

    PubMed Central

    Liu, Nian; Marenco, Luis; Miller, Perry L.

    2006-01-01

    The present study described an open source application, ResourceLog, that allows website administrators to record and analyze the usage of online resources. The application includes four components: logging, data mining, administrative interface, and back-end database. The logging component is embedded in the host website. It extracts and streamlines information about the Web visitors, the scripts, and dynamic parameters from each page request. The data mining component runs as a set of scheduled tasks that identify visitors of interest, such as those who have heavily used the resources. The identified visitors will be automatically subjected to a voluntary user survey. The usage of the website content can be monitored through the administrative interface and subjected to statistical analyses. As a pilot project, ResourceLog has been implemented in SenseLab, a Web-based neuroscience database system. ResourceLog provides a robust and useful tool to aid system evaluation of a resource-driven Web application, with a focus on determining the effectiveness of data sharing in the field and with the general public. PMID:16622167

  2. A web-based resource for designing therapeutics against Ebola Virus

    PubMed Central

    Dhanda, Sandeep Kumar; Chaudhary, Kumardeep; Gupta, Sudheer; Brahmachari, Samir Kumar; Raghava, Gajendra P. S.

    2016-01-01

    In this study, we describe a web-based resource, developed for assisting the scientific community in designing an effective therapeutics against the Ebola virus. Firstly, we predicted and identified experimentally validated epitopes in each of the antigens/proteins of the five known ebolaviruses. Secondly, we generated all the possible overlapping 9mer peptides from the proteins of ebolaviruses. Thirdly, conserved peptides across all the five ebolaviruses (four human pathogenic species) with no identical sequence in the human proteome, based on 1000 Genomes project, were identified. Finally, we identified peptide or epitope-based vaccine candidates that could activate both the B- and T-cell arms of the immune system. In addition, we also identified efficacious siRNAs against the mRNA transcriptome (absent in human transcriptome) of all the five ebolaviruses. It was observed that three species can potentially be targeted by a single siRNA (19mer) and 75 siRNAs can potentially target at least two species. A web server, EbolaVCR, has been developed that incorporates all the above information and useful computational tools (http://crdd.osdd.net/oscadd/ebola/). PMID:27113850

  3. Synthesis: comparing effects of resource and consumer fluxes into recipient food webs using meta-analysis.

    PubMed

    Allen, Daniel C; Wesner, Jeff S

    2016-03-01

    Here we synthesize empirical research using meta-analysis to compare how consumer and resource fluxes affect recipient food webs. We tested the following hypotheses: (H1) The direct effects of resource fluxes (bottom-up) should be stronger than the direct effects of consumer fluxes (top-down), because resource fluxes are permanent (do not return to the food web in which they were produced) but consumer fluxes may not be (consumers can leave). (H2) Following H1, the indirect effects should attenuate (weaken) more quickly for consumer fluxes than for resource fluxes due to their direct effects being weaker, (H3) The effects of resource fluxes should be stronger when recipient food webs are in different ecosystems than donor food webs due to differences in elevation that accompany cross-ecosystem food web interfaces, often increasing flux quantity due to gravity, while the effects of consumer fluxes should be stronger when donor and recipient food webs are in the same ecosystem as they should more easily assimilate into the recipient food web. We found no differences in the magnitude of bottom-up and top-down direct effects for resource and consumer fluxes, but top-down direct effects were 122% stronger than top-down indirect effects. Indirect effects of prey and predator fluxes quickly attenuated while indirect effects of non-prey resource and herbivore fluxes did not, as the overall direct effects of prey and predator fluxes were 123% and 163% stronger than their indirect effects, respectively. This result suggests that the magnitude of indirect effects decrease as the trophic level of resource and consumer fluxes increases, and also contrasts with results from studies showing in situ top-down indirect effects are stronger than in situ bottom-up indirect effects. We found that resource and consumer flux effect sizes were similar when they occurred between ecosystems, but when they occurred within ecosystems predator flux effects were 107% stronger than nutrient flux

  4. Synthesis: comparing effects of resource and consumer fluxes into recipient food webs using meta-analysis.

    PubMed

    Allen, Daniel C; Wesner, Jeff S

    2016-03-01

    Here we synthesize empirical research using meta-analysis to compare how consumer and resource fluxes affect recipient food webs. We tested the following hypotheses: (H1) The direct effects of resource fluxes (bottom-up) should be stronger than the direct effects of consumer fluxes (top-down), because resource fluxes are permanent (do not return to the food web in which they were produced) but consumer fluxes may not be (consumers can leave). (H2) Following H1, the indirect effects should attenuate (weaken) more quickly for consumer fluxes than for resource fluxes due to their direct effects being weaker, (H3) The effects of resource fluxes should be stronger when recipient food webs are in different ecosystems than donor food webs due to differences in elevation that accompany cross-ecosystem food web interfaces, often increasing flux quantity due to gravity, while the effects of consumer fluxes should be stronger when donor and recipient food webs are in the same ecosystem as they should more easily assimilate into the recipient food web. We found no differences in the magnitude of bottom-up and top-down direct effects for resource and consumer fluxes, but top-down direct effects were 122% stronger than top-down indirect effects. Indirect effects of prey and predator fluxes quickly attenuated while indirect effects of non-prey resource and herbivore fluxes did not, as the overall direct effects of prey and predator fluxes were 123% and 163% stronger than their indirect effects, respectively. This result suggests that the magnitude of indirect effects decrease as the trophic level of resource and consumer fluxes increases, and also contrasts with results from studies showing in situ top-down indirect effects are stronger than in situ bottom-up indirect effects. We found that resource and consumer flux effect sizes were similar when they occurred between ecosystems, but when they occurred within ecosystems predator flux effects were 107% stronger than nutrient flux

  5. Desegregation on the Web: A List of Internet Resources.

    ERIC Educational Resources Information Center

    Moore, Gwen

    2001-01-01

    Annotates a list of websites on desegregation that provide information, resources, and teaching materials. Topics include Brown v. Board of Education, desegregation of the University of Mississippi, and "Roberts v. Boston." Offers National Park Service websites related to desegregation. (CMK)

  6. Introduction to Federal and EPA Climate Change Web Resources

    EPA Science Inventory

    Presentation provides an overview of four climate data and tool websites: the US Global Change Research Program (USGCRP) and Climate Resilience Toolkit (interagency websites); the main EPA climate change website; and the internal EPA Adaptation Resource Center website.

  7. A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design

    PubMed Central

    Pache, Roland A.; Ollikainen, Noah; Kundert, Kale; O'Meara, Matthew J.; Smith, Colin A.; Kortemme, Tanja

    2015-01-01

    The development and validation of computational macromolecular modeling and design methods depend on suitable benchmark datasets and informative metrics for comparing protocols. In addition, if a method is intended to be adopted broadly in diverse biological applications, there needs to be information on appropriate parameters for each protocol, as well as metrics describing the expected accuracy compared to experimental data. In certain disciplines, there exist established benchmarks and public resources where experts in a particular methodology are encouraged to supply their most efficient implementation of each particular benchmark. We aim to provide such a resource for protocols in macromolecular modeling and design. We present a freely accessible web resource (https://kortemmelab.ucsf.edu/benchmarks) to guide the development of protocols for protein modeling and design. The site provides benchmark datasets and metrics to compare the performance of a variety of modeling protocols using different computational sampling methods and energy functions, providing a “best practice” set of parameters for each method. Each benchmark has an associated downloadable benchmark capture archive containing the input files, analysis scripts, and tutorials for running the benchmark. The captures may be run with any suitable modeling method; we supply command lines for running the benchmarks using the Rosetta software suite. We have compiled initial benchmarks for the resource spanning three key areas: prediction of energetic effects of mutations, protein design, and protein structure prediction, each with associated state-of-the-art modeling protocols. With the help of the wider macromolecular modeling community, we hope to expand the variety of benchmarks included on the website and continue to evaluate new iterations of current methods as they become available. PMID:26335248

  8. A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design.

    PubMed

    Ó Conchúir, Shane; Barlow, Kyle A; Pache, Roland A; Ollikainen, Noah; Kundert, Kale; O'Meara, Matthew J; Smith, Colin A; Kortemme, Tanja

    2015-01-01

    The development and validation of computational macromolecular modeling and design methods depend on suitable benchmark datasets and informative metrics for comparing protocols. In addition, if a method is intended to be adopted broadly in diverse biological applications, there needs to be information on appropriate parameters for each protocol, as well as metrics describing the expected accuracy compared to experimental data. In certain disciplines, there exist established benchmarks and public resources where experts in a particular methodology are encouraged to supply their most efficient implementation of each particular benchmark. We aim to provide such a resource for protocols in macromolecular modeling and design. We present a freely accessible web resource (https://kortemmelab.ucsf.edu/benchmarks) to guide the development of protocols for protein modeling and design. The site provides benchmark datasets and metrics to compare the performance of a variety of modeling protocols using different computational sampling methods and energy functions, providing a "best practice" set of parameters for each method. Each benchmark has an associated downloadable benchmark capture archive containing the input files, analysis scripts, and tutorials for running the benchmark. The captures may be run with any suitable modeling method; we supply command lines for running the benchmarks using the Rosetta software suite. We have compiled initial benchmarks for the resource spanning three key areas: prediction of energetic effects of mutations, protein design, and protein structure prediction, each with associated state-of-the-art modeling protocols. With the help of the wider macromolecular modeling community, we hope to expand the variety of benchmarks included on the website and continue to evaluate new iterations of current methods as they become available.

  9. Developing Student Gifts and Talents Using Web-Based Resources

    ERIC Educational Resources Information Center

    Code, Kimberly P.

    2007-01-01

    Technology is an essential part of young people's lives. Students today are digital natives who cannot remember a time without electronic media and technologies. Children who use the Internet spend 37 percent less time watching television and 16 percent more time with friends and family. The Internet is an excellent resource for differentiating…

  10. STEM Education in the United States: Selected Web Resources

    ERIC Educational Resources Information Center

    Harrington, Eileen G.

    2015-01-01

    The purpose of this webliography is to provide an overview of STEM education in the U.S. It provides easy access to research and best practices in the field, as well as specific programs, activities, and lesson plans that formal and informal educators can implement. The webliography also includes links to advocacy programs and resources for…

  11. The Web as an Information Resource in K-12 Education: Strategies for Supporting Students in Searching and Processing Information

    ERIC Educational Resources Information Center

    Kuiper, Els; Volman, Monique; Terwel, Jan

    2005-01-01

    The use of the Web in K-12 education has increased substantially in recent years. The Web, however, does not support the learning processes of students as a matter of course. In this review, the authors analyze what research says about the demands that the use of the Web as an information resource in education makes on the support and supervision…

  12. Food Web Architecture and Basal Resources Interact to Determine Biomass and Stoichiometric Cascades along a Benthic Food Web

    PubMed Central

    Guariento, Rafael D.; Carneiro, Luciana S.; Caliman, Adriano; Leal, João J. F.; Bozelli, Reinaldo L.; Esteves, Francisco A.

    2011-01-01

    Understanding the effects of predators and resources on primary producers has been a major focus of interest in ecology. Within this context, the trophic cascade concept especially concerning the pelagic zone of lakes has been the focus of the majority of these studies. However, littoral food webs could be especially interesting because base trophic levels may be strongly regulated by consumers and prone to be light limited. In this study, the availability of nutrients and light and the presence of an omnivorous fish (Hyphessobrycon bifasciatus) were manipulated in enclosures placed in a humic coastal lagoon (Cabiúnas Lagoon, Macaé – RJ) to evaluate the individual and interactive effects of resource availability (nutrients and light) and food web configuration on the biomass and stoichiometry of periphyton and benthic grazers. Our findings suggest that light and nutrients interact to determine periphyton biomass and stoichiometry, which propagates to the consumer level. We observed a positive effect of the availability of nutrients on periphytic biomass and grazers' biomass, as well as a reduction of periphytic C∶N∶P ratios and an increase of grazers' N and P content. Low light availability constrained the propagation of nutrient effects on periphyton biomass and induced higher periphytic C∶N∶P ratios. The effects of fish presence strongly interacted with resource availability. In general, a positive effect of fish presence was observed for the total biomass of periphyton and grazer's biomass, especially with high resource availability, but the opposite was found for periphytic autotrophic biomass. Fish also had a significant effect on periphyton stoichiometry, but no effect was observed on grazers' stoichiometric ratios. In summary, we observed that the indirect effect of fish predation on periphyton biomass might be dependent on multiple resources and periphyton nutrient stoichiometric variation can affect consumers' stoichiometry. PMID:21789234

  13. Social Networking Web Sites and Human Resource Personnel: Suggestions for Job Searches

    ERIC Educational Resources Information Center

    Roberts, Sherry J.; Roach, Terry

    2009-01-01

    Social Networking Web sites (SNWs) are now being used as reference checks by human resource personnel. For this reason, SNW users, particularly university students and other soon-to-be job applicants, should ask the following questions: Am I loading information that I want the world to see? Is this really a picture that shows me in the best light?…

  14. Electronic Resources for Youth Services: A Print Bibliography and Web Site.

    ERIC Educational Resources Information Center

    Amey, Larry; Segal, Erez

    1996-01-01

    This article evaluates 57 World Wide Web sites related to children's literature and youth-oriented library services, in categories including award-winning books; book reviews; reading and storytelling; writing resources; online children's literature; educational entertainment; and authors, publishers, and booksellers. Also included is information…

  15. The World Wide Web: A Training Tool for Family Resource Management Educators.

    ERIC Educational Resources Information Center

    Muske, Glenn; Goetting, Marsha; Vukonich, Merrylee

    2001-01-01

    Extension educators (n=55) received training on a family resource management website. Responses from 21 showed that extension educators use the Web for information and support using it for training. They appreciated having links that could be considered reliable and accurate. The data also suggest that such sites can provide a refresher for…

  16. Cyber Science: Thrill Your Students with These Web-Based Science Resources

    ERIC Educational Resources Information Center

    Holzberg, Carol S.

    2006-01-01

    The National Alliance of State Science and Mathematics Coalitions reports that American 12th graders ranked near the bottom of 21 nations that participated in the Third International Mathematics and Science Survey. This article describes several free Web resources designed to supplement rigorous classroom instruction, support NCLB initiatives, and…

  17. Aligning Web-Based Tools to the Research Process Cycle: A Resource for Collaborative Research Projects

    ERIC Educational Resources Information Center

    Price, Geoffrey P.; Wright, Vivian H.

    2012-01-01

    Using John Creswell's Research Process Cycle as a framework, this article describes various web-based collaborative technologies useful for enhancing the organization and efficiency of educational research. Visualization tools (Cacoo) assist researchers in identifying a research problem. Resource storage tools (Delicious, Mendeley, EasyBib)…

  18. A Conceptual Framework for Using and Evaluating Web-Based Learning Resources in School Education

    ERIC Educational Resources Information Center

    Hadjerrouit, Said

    2010-01-01

    Web-based learning resources (WBLRs) have provided teachers with a wide range of new teaching experiences that are not possible in traditional classroom. However, little research has been done as to which approach to WBLRs is suitable to address issues that are pertinent to learning. This paper proposes a conceptual framework to explore the design…

  19. A Survey on the Exchange of Linguistic Resources: Publishing Linguistic Linked Open Data on the Web

    ERIC Educational Resources Information Center

    Lezcano, Leonardo; Sanchez-Alonso, Salvador; Roa-Valverde, Antonio J.

    2013-01-01

    Purpose: The purpose of this paper is to provide a literature review of the principal formats and frameworks that have been used in the last 20 years to exchange linguistic resources. It aims to give special attention to the most recent approaches to publishing linguistic linked open data on the Web. Design/methodology/approach: Research papers…

  20. What Do You Recommend? Implementation and Analyses of Collaborative Information Filtering of Web Resources for Education.

    ERIC Educational Resources Information Center

    Recker, Mimi M.; Walker, Andrew; Lawless, Kimberly

    2003-01-01

    Examines results from one pilot study and two empirical studies of a collaborative filtering system applied in higher education settings. Explains the use of collaborative filtering in electronic commerce and suggests it can be adapted to education to help find useful Web resources and to bring people together with similar interests and beliefs.…

  1. Accounting Faculty Utilization of Web-Based Resources to Enhance In-Class Instruction

    ERIC Educational Resources Information Center

    Black, Thomas G.; Turetsky, Howard F.

    2010-01-01

    Our study examines the extent to which accounting faculty use web-based resources to augment classroom instruction. Moreover, we explore the effects of the institutional factors of accounting accreditation and the existence of an accounting Ph.D. program on internet use by accounting academics toward enhancing pedagogy, while controlling for the…

  2. Creating Web-Based Environmental Education Resources through Community and University Partnerships

    ERIC Educational Resources Information Center

    Phelps, Renata; Maddison, Carrie; Skamp, Keith; Braithwaite, Richard

    2008-01-01

    Community groups often seek to engage with schools in promoting environmental education goals. A collaborative initiative is described in which university pre-service teacher education students were encouraged to create Web-based teaching and learning resources, related to rainforests and world heritage areas, for use at primary and secondary…

  3. e-Science and data management resources on the Web.

    PubMed

    Gore, Sally A

    2011-01-01

    The way research is conducted has changed over time, from simple experiments to computer modeling and simulation, from individuals working in isolated laboratories to global networks of researchers collaborating on a single topic. Often, this new paradigm results in the generation of staggering amounts of data. The intensive use of data and the existence of networks of researchers characterize e-Science. The role of libraries and librarians in e-Science has been a topic of interest for some time now. This column looks at tools, resources, and projects that demonstrate successful collaborations between libraries and researchers in e-Science.

  4. Singapore National Medical Image Resource Centre (SN.MIRC): a world wide web resource for radiology education.

    PubMed

    Yang, Guo-Liang; Lim, C C Tchoyoson

    2006-08-01

    Radiology education is heavily dependent on visual images, and case-based teaching files comprising medical images can be an important tool for teaching diagnostic radiology. Currently, hardcopy film is being rapidly replaced by digital radiological images in teaching hospitals, and an electronic teaching file (ETF) library would be desirable. Furthermore, a repository of ETFs deployed on the World Wide Web has the potential for e-learning applications to benefit a larger community of learners. In this paper, we describe a Singapore National Medical Image Resource Centre (SN.MIRC) that can serve as a World Wide Web resource for teaching diagnostic radiology. On SN.MIRC, ETFs can be created using a variety of mechanisms including file upload and online form-filling, and users can search for cases using the Medical Image Resource Center (MIRC) query schema developed by the Radiological Society of North America (RSNA). The system can be improved with future enhancements, including multimedia interactive teaching files and distance learning for continuing professional development. However, significant challenges exist when exploring the potential of using the World Wide Web for radiology education.

  5. Singapore National Medical Image Resource Centre (SN.MIRC): a world wide web resource for radiology education.

    PubMed

    Yang, Guo-Liang; Lim, C C Tchoyoson

    2006-08-01

    Radiology education is heavily dependent on visual images, and case-based teaching files comprising medical images can be an important tool for teaching diagnostic radiology. Currently, hardcopy film is being rapidly replaced by digital radiological images in teaching hospitals, and an electronic teaching file (ETF) library would be desirable. Furthermore, a repository of ETFs deployed on the World Wide Web has the potential for e-learning applications to benefit a larger community of learners. In this paper, we describe a Singapore National Medical Image Resource Centre (SN.MIRC) that can serve as a World Wide Web resource for teaching diagnostic radiology. On SN.MIRC, ETFs can be created using a variety of mechanisms including file upload and online form-filling, and users can search for cases using the Medical Image Resource Center (MIRC) query schema developed by the Radiological Society of North America (RSNA). The system can be improved with future enhancements, including multimedia interactive teaching files and distance learning for continuing professional development. However, significant challenges exist when exploring the potential of using the World Wide Web for radiology education. PMID:17006584

  6. Resources for human genetics on the World Wide Web.

    PubMed

    Osborne, L R; Lee, J R; Scherer, S W

    1997-09-01

    A little over a century ago, the HMS Beagle sailed the Pacific Ocean bringing Charles Darwin to the perfect environment in which to piece together his observations forming the theory of evolution. Now, geneticists and laypeople alike surf the equally formidable waters of the internet in search of enlightenment. Here, we attempt to help you navigate towards resources for human genetics by providing maps to three destinations: The Human Genome Project (Box 1), education (Box 2), and human genetic diseases (Box 3). For each, we highlight a few sites that we consider are the most informative and original. A more extensive list containing other useful sites has been compiled and posted on a 'jump site' at: http:/(/)www.cgdn.generes.ca/.

  7. Alternatives to animal testing: information resources via the Internet and World Wide Web.

    PubMed

    Hakkinen, P J Bert; Green, Dianne K

    2002-04-25

    Many countries, including the United States, Canada, European Union member states, and others, require that a comprehensive search for possible alternatives be completed before beginning some or all research involving animals. Completing comprehensive alternatives searches and keeping current with information associated with alternatives to animal testing is a challenge that will be made easier as people throughout the world gain access to the Internet and World Wide Web. Numerous Internet and World Wide Web resources are available to provide guidance and other information on in vitro and other alternatives to animal testing. A comprehensive Web site is Alternatives to Animal Testing on the Web (Altweb), which serves as an online clearinghouse for resources, information, and news about alternatives to animal testing. Examples of other important Web sites include the joint one for the (US) Interagency Coordinating Committee on the Validation of Alternative Methods (ICCVAM) and the National Toxicology Program (NTP) Interagency Center for the Evaluation of Alternative Toxicological Methods (NICEATM) and the Norwegian Reference Centre for Laboratory Animal Science and Alternatives (The NORINA database). Internet mailing lists and online access to bulletin boards, discussion areas, newsletters, and journals are other ways to access and share information to stay current with alternatives to animal testing.

  8. Biomass transformation webs provide a unified approach to consumer–resource modelling

    PubMed Central

    Getz, Wayne M.

    2011-01-01

    An approach to modelling food web biomass flows among live and dead compartments within and among species is formulated using metaphysiological principles that characterise population growth in terms of basal metabolism, feeding, senescence and exploitation. This leads to a unified approach to modelling interactions among plants, herbivores, carnivores, scavengers, parasites and their resources. Also, dichotomising sessile miners from mobile gatherers of resources, with relevance to feeding and starvation time scales, suggests a new classification scheme involving 10 primary categories of consumer types. These types, in various combinations, rigorously distinguish scavenger from parasite, herbivory from phytophagy and detritivore from decomposer. Application of the approach to particular consumer–resource interactions is demonstrated, culminating in the construction of an anthrax-centred food web model, with parameters applicable to Etosha National Park, Namibia, where deaths of elephants and zebra from the bacterial pathogen, Bacillus anthracis, provide significant subsidies to jackals, vultures and other scavengers. PMID:21199247

  9. Biomass transformation webs provide a unified approach to consumer-resource modelling.

    PubMed

    Getz, Wayne M

    2011-02-01

    An approach to modelling food web biomass flows among live and dead compartments within and among species is formulated using metaphysiological principles that characterise population growth in terms of basal metabolism, feeding, senescence and exploitation. This leads to a unified approach to modelling interactions among plants, herbivores, carnivores, scavengers, parasites and their resources. Also, dichotomising sessile miners from mobile gatherers of resources, with relevance to feeding and starvation time scales, suggests a new classification scheme involving 10 primary categories of consumer types. These types, in various combinations, rigorously distinguish scavenger from parasite, herbivory from phytophagy and detritivore from decomposer. Application of the approach to particular consumer-resource interactions is demonstrated, culminating in the construction of an anthrax-centred food web model, with parameters applicable to Etosha National Park, Namibia, where deaths of elephants and zebra from the bacterial pathogen, Bacillus anthracis, provide significant subsidies to jackals, vultures and other scavengers. PMID:21199247

  10. The NIF LinkOut broker: a web resource to facilitate federated data integration using NCBI identifiers.

    PubMed

    Marenco, Luis; Ascoli, Giorgio A; Martone, Maryann E; Shepherd, Gordon M; Miller, Perry L

    2008-09-01

    This paper describes the NIF LinkOut Broker (NLB) that has been built as part of the Neuroscience Information Framework (NIF) project. The NLB is designed to coordinate the assembly of links to neuroscience information items (e.g., experimental data, knowledge bases, and software tools) that are (1) accessible via the Web, and (2) related to entries in the National Center for Biotechnology Information's (NCBI's) Entrez system. The NLB collects these links from each resource and passes them to the NCBI which incorporates them into its Entrez LinkOut service. In this way, an Entrez user looking at a specific Entrez entry can LinkOut directly to related neuroscience information. The information stored in the NLB can also be utilized in other ways. A second approach, which is operational on a pilot basis, is for the NLB Web server to create dynamically its own Web page of LinkOut links for each NCBI identifier in the NLB database. This approach can allow other resources (in addition to the NCBI Entrez) to LinkOut to related neuroscience information. The paper describes the current NLB system and discusses certain design issues that arose during its implementation.

  11. SLA-Driven Adaptive Resource Management for Web Applications on a Heterogeneous Compute Cloud

    NASA Astrophysics Data System (ADS)

    Iqbal, Waheed; Dailey, Matthew; Carrera, David

    Current service-level agreements (SLAs) offered by cloud providers make guarantees about quality attributes such as availability. However, although one of the most important quality attributes from the perspective of the users of a cloud-based Web application is its response time, current SLAs do not guarantee response time. Satisfying a maximum average response time guarantee for Web applications is difficult due to unpredictable traffic patterns, but in this paper we show how it can be accomplished through dynamic resource allocation in a virtual Web farm. We present the design and implementation of a working prototype built on a EUCALYPTUS-based heterogeneous compute cloud that actively monitors the response time of each virtual machine assigned to the farm and adaptively scales up the application to satisfy a SLA promising a specific average response time. We demonstrate the feasibility of the approach in an experimental evaluation with a testbed cloud and a synthetic workload. Adaptive resource management has the potential to increase the usability of Web applications while maximizing resource utilization.

  12. Exploring face-to-face and Web-based pedagogy in undergraduate natural resource sciences

    NASA Astrophysics Data System (ADS)

    Mbabaliye, Theogene

    Little has been published about Internet instruction compared to traditional classroom teaching in undergraduate natural resource science (NRS) education. This study hypothesized associations between teaching environments (face-to-face only (FF), Web only (WE), mixed mode (MI)); and teaching philosophy, practices, and perceived course outcomes. A questionnaire was sent to 142 faculty members with experience teaching in these environments in Western US. Sixty percent responded. Data were analyzed using factor analysis and multivariate statistics. Only statistically significant differences are presented. Most respondents were male (68%) 50-59 years old (80%) and tenured (74%). Overall, Web-based instruction was not seen as equivalent to face to face instruction. Adoption of the Internet for teaching was beyond critical mass. Most faculty members ranked their ability to use the Internet as average (27%) or expert (22%). Faculty rarely perceived students' learning experience in a WE course as "better" than FF. Web-based courses were not usually required of majors in the offering department. Faculty age, gender and experience are significant variables in use of some teaching practices. Faculty members who used the Internet favored a constructivist teaching philosophy, while FF and MI instruction tended towards a behaviorist philosophy. Respondents' most frequent teaching practices addressed connections, collaboration, meaning making, and learner autonomy. Collaborative teaching strategies were seldom used in Web-based instruction relative to FF. Learning assessments focused on learner interactions, efforts (individual or groups), and recall. The latter assessment was used less on the Web. Respondents viewed effective teaching in all teaching environments as achieving competency and application of knowledge. Personal experience, resource availability, and feedback were the most important influences on teaching. Resource availability constrained Internet instruction most

  13. Mental health resources for LGBT collegians: a content analysis of college counseling center Web sites.

    PubMed

    Wright, Paul J; McKinley, Christopher J

    2011-01-01

    This study content analyzed a randomly selected stratified national sample of 203 four-year United States colleges' counseling center Web sites to assess the degree to which such sites feature information and reference services for lesbian, gay, bisexual, and transgender (LGBT) collegians. Results revealed that LGBT-targeted communications were infrequent. For instance, fewer than one third of counseling center Web sites described individual counseling opportunities for LGBT students, fewer than 11% mentioned group counseling opportunities, and fewer than 6% offered a university crafted pamphlet with information about LGBT issues and resources. Findings are interpreted within the context of prior LGBT student health research.

  14. Resource partitioning among top predators in a Miocene food web.

    PubMed

    Domingo, M Soledad; Domingo, Laura; Badgley, Catherine; Sanisidro, Oscar; Morales, Jorge

    2013-01-01

    The exceptional fossil sites of Cerro de los Batallones (Madrid Basin, Spain) contain abundant remains of Late Miocene mammals. From these fossil assemblages, we have inferred diet, resource partitioning and habitat of three sympatric carnivorous mammals based on stable isotopes. The carnivorans include three apex predators: two sabre-toothed cats (Felidae) and a bear dog (Amphicyonidae). Herbivore and carnivore carbon isotope (δ(13)C) values from tooth enamel imply the presence of a woodland ecosystem dominated by C(3) plants. δ(13)C values and mixing-model analyses suggest that the two sabre-toothed cats, one the size of a leopard and the other the size of a tiger, consumed herbivores with similar δ(13)C values from a more wooded portion of the ecosystem. The two sabre-toothed cats probably hunted prey of different body sizes, and the smaller species could have used tree cover to avoid encounters with the larger felid. For the bear dog, δ(13)C values are higher and differ significantly from those of the sabre-toothed cats, suggesting a diet that includes prey from more open woodland. Coexistence of the sabre-toothed cats and the bear dog was likely facilitated by prey capture in different portions of the habitat. This study demonstrates the utility of stable isotope analysis for investigating the behaviour and ecology of members of past carnivoran guilds.

  15. Resource partitioning among top predators in a Miocene food web

    PubMed Central

    Domingo, M. Soledad; Domingo, Laura; Badgley, Catherine; Sanisidro, Oscar; Morales, Jorge

    2013-01-01

    The exceptional fossil sites of Cerro de los Batallones (Madrid Basin, Spain) contain abundant remains of Late Miocene mammals. From these fossil assemblages, we have inferred diet, resource partitioning and habitat of three sympatric carnivorous mammals based on stable isotopes. The carnivorans include three apex predators: two sabre-toothed cats (Felidae) and a bear dog (Amphicyonidae). Herbivore and carnivore carbon isotope (δ13C) values from tooth enamel imply the presence of a woodland ecosystem dominated by C3 plants. δ13C values and mixing-model analyses suggest that the two sabre-toothed cats, one the size of a leopard and the other the size of a tiger, consumed herbivores with similar δ13C values from a more wooded portion of the ecosystem. The two sabre-toothed cats probably hunted prey of different body sizes, and the smaller species could have used tree cover to avoid encounters with the larger felid. For the bear dog, δ13C values are higher and differ significantly from those of the sabre-toothed cats, suggesting a diet that includes prey from more open woodland. Coexistence of the sabre-toothed cats and the bear dog was likely facilitated by prey capture in different portions of the habitat. This study demonstrates the utility of stable isotope analysis for investigating the behaviour and ecology of members of past carnivoran guilds. PMID:23135673

  16. Developing NaviCanPlan: A Mobile Web Resource Locator for Cancer Providers and Survivors.

    PubMed

    Vollmer Dahlke, Deborah; Kellstedt, Debra; Weinberg, Armin D

    2015-12-01

    As of January, 2012, an estimated 13.7 million persons are living as cancer survivors. This population is expected to grow to nearly 18 million by 2022. While their treatment may be considered successful, many cancer survivors experience long-term physical, emotional, and psychosocial late effects of treatment. Our focus was on community-based cancer care-both rural and urban-as almost 90% of cancer care occurs in community settings, where a full complement of supportive healthcare professionals may not be available. This study describes the results of stakeholder engagement and the feedback processes used to create NaviCanPlan, a mobile web resource locator designed to educate and inform both providers and survivors in finding health-related services, often in noncancer center settings. Individual interviews with survivors and providers regarding resource needs to address a variety of physical and psychosocial late effects were supplemented with site visits, web-based polling, and webinars discussions. Overall, the results indicated a need for a programmatic approach to providing education about community, medical, and nonmedical resources for providers and survivors. Design and content criteria for a web-based mobile resource locator were defined, articulated, and implemented.

  17. Injury surveillance in low-resource settings using Geospatial and Social Web technologies

    PubMed Central

    2010-01-01

    Background Extensive public health gains have benefited high-income countries in recent decades, however, citizens of low and middle-income countries (LMIC) have largely not enjoyed the same advancements. This is in part due to the fact that public health data - the foundation for public health advances - are rarely collected in many LMIC. Injury data are particularly scarce in many low-resource settings, despite the huge associated burden of morbidity and mortality. Advances in freely-accessible and easy-to-use information and communication (ICT) technology may provide the impetus for increased public health data collection in settings with limited financial and personnel resources. Methods and Results A pilot study was conducted at a hospital in Cape Town, South Africa to assess the utility and feasibility of using free (non-licensed), and easy-to-use Social Web and GeoWeb tools for injury surveillance in low-resource settings. Data entry, geocoding, data exploration, and data visualization were successfully conducted using these technologies, including Google Spreadsheet, Mapalist, BatchGeocode, and Google Earth. Conclusion This study examined the potential for Social Web and GeoWeb technologies to contribute to public health data collection and analysis in low-resource settings through an injury surveillance pilot study conducted in Cape Town, South Africa. The success of this study illustrates the great potential for these technologies to be leveraged for public health surveillance in resource-constrained environments, given their ease-of-use and low-cost, and the sharing and collaboration capabilities they afford. The possibilities and potential limitations of these technologies are discussed in relation to the study, and to the field of public health in general. PMID:20497570

  18. Awareness and action for eliminating health care disparities in pain care: Web-based resources.

    PubMed

    Fan, Ling; Thomas, Melissa; Deitrick, Ginna E; Polomano, Rosemary C

    2008-01-01

    Evidence shows that disparities in pain care exist, and this problem spans across all health care settings. Health care disparities are complex, and stem from the health system climate, limitations imposed by laws and regulations, and discriminatory practices that are deep seated in biases, stereotypes, and uncertainties surrounding communication and decision-making processes. A search of the Internet identified thousands of Web sites, documents, reports, and educational materials pertaining to health and pain disparities. Web sites for federal agencies, private foundations, and professional and consumer-oriented organizations provide useful information on disparities related to age, race, ethnicity, geography, socioeconomic status, and specific populations. The contents of 10 Web sites are examined for resources to assist health professionals and consumers in better understanding health and pain disparities and ways to overcome them in practice. PMID:19042858

  19. Electronic Resources Evaluation Central: Using Off-the-Shelf Software, Web 2.0 Tools, and LibGuides to Manage an Electronic Resources Evaluation Process

    ERIC Educational Resources Information Center

    England, Lenore; Fu, Li

    2011-01-01

    A critical part of electronic resources management, the electronic resources evaluation process is multi-faceted and includes a seemingly endless range of resources and tools involving numerous library staff. A solution is to build a Web site to bring all of the components together that can be implemented quickly and result in an organizational…

  20. The Job Demands-Resources Model: An Analysis of Additive and Joint Effects of Demands and Resources

    ERIC Educational Resources Information Center

    Hu, Qiao; Schaufeli, Wilmar B.; Taris, Toon W.

    2011-01-01

    The present study investigated the additive, synergistic, and moderating effects of job demands and job resources on well-being (burnout and work engagement) and organizational outcomes, as specified by the Job Demands-Resources (JD-R) model. A survey was conducted among two Chinese samples: 625 blue collar workers and 761 health professionals. A…

  1. Web-Enhanced Instruction and Learning: Findings of a Short- and Long-Term Impact Study and Teacher Use of NASA Web Resources

    NASA Technical Reports Server (NTRS)

    McCarthy, Marianne C.; Grabowski, Barbara L.; Koszalka, Tiffany

    2003-01-01

    Over a three-year period, researchers and educators from the Pennsylvania State University (PSU), University Park, Pennsylvania, and the NASA Dryden Flight Research Center (DFRC), Edwards, California, worked together to analyze, develop, implement and evaluate materials and tools that enable teachers to use NASA Web resources effectively for teaching science, mathematics, technology and geography. Two conference publications and one technical paper have already been published as part of this educational research series on Web-based instruction and learning. This technical paper, Web-Enhanced Instruction and Learning: Findings of a Short- and Long-Term Impact Study, is the culminating report in this educational research series and is based on the final report submitted to NASA. This report describes the broad spectrum of data gathered from teachers about their experiences using NASA Web resources in the classroom. It also describes participating teachers responses and feedback about the use of the NASA Web-Enhanced Learning Environment Strategies reflection tool on their teaching practices. The reflection tool was designed to help teachers merge the vast array of NASA resources with the best teaching methods, taking into consideration grade levels, subject areas and teaching preferences. The teachers described their attitudes toward technology and innovation in the classroom and their experiences and perceptions as they attempted to integrate Web resources into science, mathematics, technology and geography instruction.

  2. A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae.

    PubMed

    Linder, P; Gasteiger, E; Bairoch, A

    2000-04-01

    Members of the RNA helicase protein family are defined by several motifs that have been widely conserved during evolution. They are found in all organisms-from bacteria to humans-and many viruses. The minimum number of RNA helicases present within a eukaryotic cell can be predicted from the complete sequence of the Saccharomyces cerevisiae genome. Recent progress in the functional analysis of various family members has confirmed the significance of RNA helicases for most cellular RNA metabolic processes. We have assembled a web resource that focuses on RNA helicases from the budding yeast Saccharomyces cerevisiae. It includes descriptions of RNA helicases and their functions, links to sequence- and yeast-specific databases, an extensive list of references, and links to non-yeast helicase web resources.

  3. Pennsylvania StreamStats--A web-based application for obtaining water-resource-related information

    USGS Publications Warehouse

    Stuckey, Marla H.; Hoffman, Scott A.

    2010-01-01

    StreamStats is a national web-based Geographic Information System (GIS) application, developed by the U.S. Geological Survey (USGS), in cooperation with Environmental Systems Research Institute, Inc., to provide a variety of water-resource-related information. Users can easily obtain descriptive information, basin characteristics, and streamflow statistics for USGS streamgages and ungaged stream locations throughout Pennsylvania. StreamStats also allows users to search upstream and (or) downstream from user-selected points to identify locations of and obtain information for water-resource-related activities, such as dams and streamgages.

  4. iLIR database: A web resource for LIR motif-containing proteins in eukaryotes

    PubMed Central

    Jacomin, Anne-Claire; Samavedam, Siva; Promponas, Vasilis; Nezis, Ioannis P.

    2016-01-01

    ABSTRACT Atg8-family proteins are the best-studied proteins of the core autophagic machinery. They are essential for the elongation and closure of the phagophore into a proper autophagosome. Moreover, Atg8-family proteins are associated with the phagophore from the initiation of the autophagic process to, or just prior to, the fusion between autophagosomes with lysosomes. In addition to their implication in autophagosome biogenesis, they are crucial for selective autophagy through their ability to interact with selective autophagy receptor proteins necessary for the specific targeting of substrates for autophagic degradation. In the past few years it has been revealed that Atg8-interacting proteins include not only receptors but also components of the core autophagic machinery, proteins associated with vesicles and their transport, and specific proteins that are selectively degraded by autophagy. Atg8-interacting proteins contain a short linear LC3-interacting region/LC3 recognition sequence/Atg8-interacting motif (LIR/LRS/AIM) motif which is responsible for their interaction with Atg8-family proteins. These proteins are referred to as LIR-containing proteins (LIRCPs). So far, many experimental efforts have been carried out to identify new LIRCPs, leading to the characterization of some of them in the past 10 years. Given the need for the identification of LIRCPs in various organisms, we developed the iLIR database (https://ilir.warwick.ac.uk) as a freely available web resource, listing all the putative canonical LIRCPs identified in silico in the proteomes of 8 model organisms using the iLIR server, combined with a Gene Ontology (GO) term analysis. Additionally, a curated text-mining analysis of the literature permitted us to identify novel putative LICRPs in mammals that have not previously been associated with autophagy. PMID:27484196

  5. Cryptic biodiversity effects: importance of functional redundancy revealed through addition of food web complexity.

    PubMed

    Philpott, Stacy M; Pardee, Gabriella L; Gonthier, David J

    2012-05-01

    Interactions between predators and the degree of functional redundancy among multiple predator species may determine whether herbivores experience increased or decreased predation risk. Specialist parasites can modify predator behavior, yet rarely have cascading effects on multiple predator species and prey been evaluated. We examined influences of specialist phorid parasites (Pseudacteon spp.) on three predatory ant species and herbivores in a coffee agroecosystem. Specifically, we examined whether changes in ant richness affected fruit damage by the coffee berry borer (Hypothenemus hampei) and whether phorids altered multi-predator effects. Each ant species reduced borer damage, and without phorids, increasing predator richness did not further decrease borer damage. However, with phorids, activity of one ant species was reduced, indicating that the presence of multiple ant species was necessary to limit borer damage. In addition, phorid presence revealed synergistic effects of multiple ant species, not observed without the presence of this parasite. Thus, a trait-mediated cascade resulting from a parasite-induced predator behavioral change revealed the importance of functional redundancy, predator diversity, and food web complexity for control of this important pest.

  6. Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

    PubMed

    Waagmeester, Andra; Kutmon, Martina; Riutta, Anders; Miller, Ryan; Willighagen, Egon L; Evelo, Chris T; Pico, Alexander R

    2016-06-01

    The diversity of online resources storing biological data in different formats provides a challenge for bioinformaticians to integrate and analyse their biological data. The semantic web provides a standard to facilitate knowledge integration using statements built as triples describing a relation between two objects. WikiPathways, an online collaborative pathway resource, is now available in the semantic web through a SPARQL endpoint at http://sparql.wikipathways.org. Having biological pathways in the semantic web allows rapid integration with data from other resources that contain information about elements present in pathways using SPARQL queries. In order to convert WikiPathways content into meaningful triples we developed two new vocabularies that capture the graphical representation and the pathway logic, respectively. Each gene, protein, and metabolite in a given pathway is defined with a standard set of identifiers to support linking to several other biological resources in the semantic web. WikiPathways triples were loaded into the Open PHACTS discovery platform and are available through its Web API (https://dev.openphacts.org/docs) to be used in various tools for drug development. We combined various semantic web resources with the newly converted WikiPathways content using a variety of SPARQL query types and third-party resources, such as the Open PHACTS API. The ability to use pathway information to form new links across diverse biological data highlights the utility of integrating WikiPathways in the semantic web. PMID:27336457

  7. Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.

    PubMed

    Waagmeester, Andra; Kutmon, Martina; Riutta, Anders; Miller, Ryan; Willighagen, Egon L; Evelo, Chris T; Pico, Alexander R

    2016-06-01

    The diversity of online resources storing biological data in different formats provides a challenge for bioinformaticians to integrate and analyse their biological data. The semantic web provides a standard to facilitate knowledge integration using statements built as triples describing a relation between two objects. WikiPathways, an online collaborative pathway resource, is now available in the semantic web through a SPARQL endpoint at http://sparql.wikipathways.org. Having biological pathways in the semantic web allows rapid integration with data from other resources that contain information about elements present in pathways using SPARQL queries. In order to convert WikiPathways content into meaningful triples we developed two new vocabularies that capture the graphical representation and the pathway logic, respectively. Each gene, protein, and metabolite in a given pathway is defined with a standard set of identifiers to support linking to several other biological resources in the semantic web. WikiPathways triples were loaded into the Open PHACTS discovery platform and are available through its Web API (https://dev.openphacts.org/docs) to be used in various tools for drug development. We combined various semantic web resources with the newly converted WikiPathways content using a variety of SPARQL query types and third-party resources, such as the Open PHACTS API. The ability to use pathway information to form new links across diverse biological data highlights the utility of integrating WikiPathways in the semantic web.

  8. Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

    PubMed Central

    Waagmeester, Andra; Pico, Alexander R.

    2016-01-01

    The diversity of online resources storing biological data in different formats provides a challenge for bioinformaticians to integrate and analyse their biological data. The semantic web provides a standard to facilitate knowledge integration using statements built as triples describing a relation between two objects. WikiPathways, an online collaborative pathway resource, is now available in the semantic web through a SPARQL endpoint at http://sparql.wikipathways.org. Having biological pathways in the semantic web allows rapid integration with data from other resources that contain information about elements present in pathways using SPARQL queries. In order to convert WikiPathways content into meaningful triples we developed two new vocabularies that capture the graphical representation and the pathway logic, respectively. Each gene, protein, and metabolite in a given pathway is defined with a standard set of identifiers to support linking to several other biological resources in the semantic web. WikiPathways triples were loaded into the Open PHACTS discovery platform and are available through its Web API (https://dev.openphacts.org/docs) to be used in various tools for drug development. We combined various semantic web resources with the newly converted WikiPathways content using a variety of SPARQL query types and third-party resources, such as the Open PHACTS API. The ability to use pathway information to form new links across diverse biological data highlights the utility of integrating WikiPathways in the semantic web. PMID:27336457

  9. Seasonal variation exceeds effects of salmon carcass additions on benthic food webs in the Elwha River

    USGS Publications Warehouse

    Morley, S.A.; Coe, H.J.; Duda, J.J.; Dunphy, L.S.; McHenry, M.L.; Beckman, B.R.; Elofson, M.; Sampson, E. M.; Ward, L.

    2016-01-01

    Dam removal and other fish barrier removal projects in western North America are assumed to boost freshwater productivity via the transport of marine-derived nutrients from recolonizing Pacific salmon (Oncorhynchus spp.). In anticipation of the removal of two hydroelectric dams on the Elwha River in Washington State, we tested this hypothesis with a salmon carcass addition experiment. Our study was designed to examine how background nutrient dynamics and benthic food webs vary seasonally, and how these features respond to salmon subsidies. We conducted our experiment in six side channels of the Elwha River, each with a spatially paired reference and treatment reach. Each reach was sampled on multiple occasions from October 2007 to August 2008, before and after carcass placement. We evaluated nutrient limitation status; measured water chemistry, periphyton, benthic invertebrates, and juvenile rainbow trout (O. mykiss) response; and traced salmon-derived nutrient uptake using stable isotopes. Outside of winter, algal accrual was limited by both nitrogen and phosphorous and remained so even in the presence of salmon carcasses. One month after salmon addition, dissolved inorganic nitrogen levels doubled in treatment reaches. Two months after addition, benthic algal accrual was significantly elevated. We detected no changes in invertebrate or fish metrics, with the exception of 15N enrichment. Natural seasonal variability was greater than salmon effects for the majority of our response metrics. Yet seasonality and synchronicity of nutrient supply and demand are often overlooked in nutrient enhancement studies. Timing and magnitude of salmon-derived nitrogen utilization suggest that uptake of dissolved nutrients was favored over direct consumption of carcasses. The highest proportion of salmon-derived nitrogen was incorporated by herbivores (18–30%) and peaked 1–2 months after carcass addition. Peak nitrogen enrichment in predators (11–16%) occurred 2–3

  10. Aggregation of Cricket Activity in Response to Resource Addition Increases Local Diversity

    PubMed Central

    Szinwelski, Neucir; Rosa, Cassiano Sousa; Solar, Ricardo Ribeiro de Castro; Sperber, Carlos Frankl

    2015-01-01

    Crickets are often found feeding on fallen fruits among forest litter. Fruits and other sugar-rich resources are not homogeneously distributed, nor are they always available. We therefore expect that crickets dwelling in forest litter have a limited supply of sugar-rich resource, and will perceive this and displace towards resource-supplemented sites. Here we evaluate how sugar availability affects cricket species richness and abundance in old-growth Atlantic forest by spraying sugarcane syrup on leaf litter, simulating increasing availability, and collecting crickets via pitfall trapping. We found an asymptotic positive association between resource addition and species richness, and an interaction between resource addition and species identity on cricket abundance, which indicates differential effects of resource addition among cricket species. Our results indicate that 12 of the 13 cricket species present in forest litter are maintained at low densities by resource scarcity; this highlights sugar-rich resource as a short-term driver of litter cricket community structure in tropical forests. When resource was experimentally increased, species richness increased due to behavioral displacement. We present evidence that the density of many species is limited by resource scarcity and, when resources are added, behavioral displacement promotes increased species packing and alters species composition. Further, our findings have technical applicability for increasing sampling efficiency of local cricket diversity in studies aiming to estimate species richness, but with no regard to local environmental drivers or species-abundance characteristics. PMID:26436669

  11. An introduction to My Environmental Education Evaluation Resource Assistant (MEERA), a web-based resource for self-directed learning about environmental education program evaluation.

    PubMed

    Zint, Michaela

    2010-05-01

    My Environmental Education Evaluation Resource Assistant or "MEERA" is a web-site designed to support environmental educators' program evaluation activities. MEERA has several characteristics that set it apart from other self-directed learning evaluation resources. Readers are encouraged to explore the site and to reflect on the role that self-directed learning resources can play in program evaluation and how those resources could be better designed.

  12. Technical Services and the World Wide Web.

    ERIC Educational Resources Information Center

    Scheschy, Virginia M.

    The World Wide Web and browsers such as Netscape and Mosaic have simplified access to electronic resources. Today, technical services librarians can share in the wealth of information available on the Web. One of the premier Web sites for acquisitions librarians is AcqWeb, a cousin of the AcqNet listserv. In addition to interesting news items,…

  13. Student Web Use, Columbia Earthscape, and Their Implications for Online Earth Science Resources

    NASA Astrophysics Data System (ADS)

    Haber, J.; Luby, M.; Wittenberg, K.

    2002-12-01

    For three years, Columbia Earthscape, www.earthscape.org, has served as a test bed for the development and evaluation of Web-based geoscience education. Last fall (EOS Trans. AGU, 82(47), Fall Meet. Suppl., Abstract ED11A-11, 2001), we described how librarian, scientist, instructor, and student feedback led to sweeping changes in interface and acquisitions. Further assessment has looked at the value of a central online resource for Earth-system science education in light of patterns of study. Columbia Earthscape aimed to create an authoritative resource that reflects the interconnectedness of the Internet, of the disciplines of Earth-systems science, and of research, education, and public policy. Evaluation thus has three parts. The editors and editorial advisory board have evaluated projects for the site for accuracy and relevance to the project?s original context of Earth issues and topical mini-courses. Second, our research sought patterns of student use and library acquisition of Internet sources. Last, we asked if and how students benefit from Columbia Earthscape. We found, first, that while libraries are understandably reluctant to add online resources to strained budgets, almost all students work online; they vary almost solely in personal Web use. Second, Web use does not discourage use of print. Third, researchers often search Columbia Earthscape, but students, especially in schools, prefer browsing by topic of interest. Fourth, if they did not have this resource, most would surf, but many feel lost on the Web, and few say they can judge the quality of materials they used. Fifth, students found Columbia Earthscape helpful, relevant, and current, but most often for its research and policy materials. Many commented on issue-related collections original to Columbia Earthscape. While indeed we intended our Classroom Models and Sample Syllabi primarily as aids to instructor course design, we conclude, first, that students stick anyway to assigned materials and

  14. Cross-ecosystem impacts of stream pollution reduce resource and contaminant flux to riparian food webs.

    PubMed

    Kraus, Johanna M; Schmidt, Travis S; Walters, David M; Wanty, Richard B; Zuellig, Robert E; Wolf, Ruth E

    2014-03-01

    The effects of aquatic contaminants are propagated across ecosystem boundaries by aquatic insects that export resources and contaminants to terrestrial food webs; however, the mechanisms driving these effects are poorly understood. We examined how emergence, contaminant concentration, and total contaminant flux by adult aquatic insects changed over a gradient of bioavailable metals in streams and how these changes affected riparian web-building spiders. Insect emergence decreased 97% over the metal gradient, whereas metal concentrations in adult insects changed relatively little. As a result, total metal exported by insects (flux) was lowest at the most contaminated streams, declining 96% among sites. Spiders were affected by the decrease in prey biomass, but not by metal exposure or metal flux to land in aquatic prey. Aquatic insects are increasingly thought to increase exposure of terrestrial consumers to aquatic contaminants, but stream metals reduce contaminant flux to riparian consumers by strongly impacting the resource linkage. Our results demonstrate the importance of understanding the contaminant-specific effects of aquatic pollutants on adult insect emergence and contaminant accumulation in adults to predict impacts on terrestrial food webs. PMID:24689137

  15. Cross-ecosystem impacts of stream pollution reduce resource and contaminant flux to riparian food webs.

    PubMed

    Kraus, Johanna M; Schmidt, Travis S; Walters, David M; Wanty, Richard B; Zuellig, Robert E; Wolf, Ruth E

    2014-03-01

    The effects of aquatic contaminants are propagated across ecosystem boundaries by aquatic insects that export resources and contaminants to terrestrial food webs; however, the mechanisms driving these effects are poorly understood. We examined how emergence, contaminant concentration, and total contaminant flux by adult aquatic insects changed over a gradient of bioavailable metals in streams and how these changes affected riparian web-building spiders. Insect emergence decreased 97% over the metal gradient, whereas metal concentrations in adult insects changed relatively little. As a result, total metal exported by insects (flux) was lowest at the most contaminated streams, declining 96% among sites. Spiders were affected by the decrease in prey biomass, but not by metal exposure or metal flux to land in aquatic prey. Aquatic insects are increasingly thought to increase exposure of terrestrial consumers to aquatic contaminants, but stream metals reduce contaminant flux to riparian consumers by strongly impacting the resource linkage. Our results demonstrate the importance of understanding the contaminant-specific effects of aquatic pollutants on adult insect emergence and contaminant accumulation in adults to predict impacts on terrestrial food webs.

  16. Soybean Knowledge Base (SoyKB): a Web Resource for Soybean Translational Genomics

    SciTech Connect

    Joshi, Trupti; Patil, Kapil; Fitzpatrick, Michael R.; Franklin, Levi D.; Yao, Qiuming; Cook, Jeffrey R.; Wang, Zhem; Libault, Marc; Brechenmacher, Laurent; Valliyodan, Babu; Wu, Xiaolei; Cheng, Jianlin; Stacey, Gary; Nguyen, Henry T.; Xu, Dong

    2012-01-17

    Background: Soybean Knowledge Base (SoyKB) is a comprehensive all-inclusive web resource for soybean translational genomics. SoyKB is designed to handle the management and integration of soybean genomics, transcriptomics, proteomics and metabolomics data along with annotation of gene function and biological pathway. It contains information on four entities, namely genes, microRNAs, metabolites and single nucleotide polymorphisms (SNPs). Methods: SoyKB has many useful tools such as Affymetrix probe ID search, gene family search, multiple gene/ metabolite search supporting co-expression analysis, and protein 3D structure viewer as well as download and upload capacity for experimental data and annotations. It has four tiers of registration, which control different levels of access to public and private data. It allows users of certain levels to share their expertise by adding comments to the data. It has a user-friendly web interface together with genome browser and pathway viewer, which display data in an intuitive manner to the soybean researchers, producers and consumers. Conclusions: SoyKB addresses the increasing need of the soybean research community to have a one-stop-shop functional and translational omics web resource for information retrieval and analysis in a user-friendly way. SoyKB can be publicly accessed at http://soykb.org/.

  17. A Web Resource for Lab Activities Using SEM, EDX and Light Microscopy

    NASA Astrophysics Data System (ADS)

    Argast, A.; Tennis, C. F.

    2003-12-01

    A resource that facilitates undergraduate activities centered on the development of perthitic textures is available at http://www.geosci.ipfw.edu/sem/semedx.html. The web site provides a coherent set of data and images from a perthite and an anorthoclase sample. Backscatter and secondary electron images, plane- and cross-polarized light images, energy dispersive X-ray (EDX) data from 13 points on the perthite and 31 points on the anorthoclase (including spectra and results files with data expressed as wt. and atomic percents) and X-ray diffraction (XRD) data are available. Care has been taken to match the areas examined by light and electron methods, allowing students to directly compare the data available from each technique. Brief descriptions of the various methods are provided. The available information can be the basis for many different exercises. Those without easy access to mircoprobes or EDX spectrometers will find the spectra useful for discussions of microchemical techniques. Different phases can be identified in the light and SEM images. The chemical results can be used to calculate formulas. (In addition to the feldspar, the anorthoclase phenocryst contains olivine, clinopyroxene, ulvospinel, apatite and glass.) Feldspar compositions can be plotted to illustrate compositional differences in perthite and anorthoclase. Glass compositions from the interior and margins of the anorthoclase phenocrysts can be compared. Numerous other possibilities, of varying levels of complexity, exist. The perthite (from Perth, Ontario) and the anorthoclase (from Mt. Erebus, Antarctica) were purchased from Wards Natural Science. There are many students with little or no access to data derived from EDX, SEM, XRD and similar techniques. It is our responsibility to find ways to make this information more universally available to all students.

  18. iLIR: A web resource for prediction of Atg8-family interacting proteins.

    PubMed

    Kalvari, Ioanna; Tsompanis, Stelios; Mulakkal, Nitha C; Osgood, Richard; Johansen, Terje; Nezis, Ioannis P; Promponas, Vasilis J

    2014-05-01

    Macroautophagy was initially considered to be a nonselective process for bulk breakdown of cytosolic material. However, recent evidence points toward a selective mode of autophagy mediated by the so-called selective autophagy receptors (SARs). SARs act by recognizing and sorting diverse cargo substrates (e.g., proteins, organelles, pathogens) to the autophagic machinery. Known SARs are characterized by a short linear sequence motif (LIR-, LRS-, or AIM-motif) responsible for the interaction between SARs and proteins of the Atg8 family. Interestingly, many LIR-containing proteins (LIRCPs) are also involved in autophagosome formation and maturation and a few of them in regulating signaling pathways. Despite recent research efforts to experimentally identify LIRCPs, only a few dozen of this class of-often unrelated-proteins have been characterized so far using tedious cell biological, biochemical, and crystallographic approaches. The availability of an ever-increasing number of complete eukaryotic genomes provides a grand challenge for characterizing novel LIRCPs throughout the eukaryotes. Along these lines, we developed iLIR, a freely available web resource, which provides in silico tools for assisting the identification of novel LIRCPs. Given an amino acid sequence as input, iLIR searches for instances of short sequences compliant with a refined sensitive regular expression pattern of the extended LIR motif (xLIR-motif) and retrieves characterized protein domains from the SMART database for the query. Additionally, iLIR scores xLIRs against a custom position-specific scoring matrix (PSSM) and identifies potentially disordered subsequences with protein interaction potential overlapping with detected xLIR-motifs. Here we demonstrate that proteins satisfying these criteria make good LIRCP candidates for further experimental verification. Domain architecture is displayed in an informative graphic, and detailed results are also available in tabular form. We anticipate

  19. GIS-and Web-based Water Resource Geospatial Infrastructure for Oil Shale Development

    SciTech Connect

    Zhou, Wei; Minnick, Matthew; Geza, Mengistu; Murray, Kyle; Mattson, Earl

    2012-09-30

    The Colorado School of Mines (CSM) was awarded a grant by the National Energy Technology Laboratory (NETL), Department of Energy (DOE) to conduct a research project en- titled GIS- and Web-based Water Resource Geospatial Infrastructure for Oil Shale Development in October of 2008. The ultimate goal of this research project is to develop a water resource geo-spatial infrastructure that serves as “baseline data” for creating solutions on water resource management and for supporting decisions making on oil shale resource development. The project came to the end on September 30, 2012. This final project report will report the key findings from the project activity, major accomplishments, and expected impacts of the research. At meantime, the gamma version (also known as Version 4.0) of the geodatabase as well as other various deliverables stored on digital storage media will be send to the program manager at NETL, DOE via express mail. The key findings from the project activity include the quantitative spatial and temporal distribution of the water resource throughout the Piceance Basin, water consumption with respect to oil shale production, and data gaps identified. Major accomplishments of this project include the creation of a relational geodatabase, automated data processing scripts (Matlab) for database link with surface water and geological model, ArcGIS Model for hydrogeologic data processing for groundwater model input, a 3D geological model, surface water/groundwater models, energy resource development systems model, as well as a web-based geo-spatial infrastructure for data exploration, visualization and dissemination. This research will have broad impacts of the devel- opment of the oil shale resources in the US. The geodatabase provides a “baseline” data for fur- ther study of the oil shale development and identification of further data collection needs. The 3D geological model provides better understanding through data interpolation and

  20. 15 CFR 270.204 - Provision of additional resources and services needed by a Team.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... services needed by a Team. 270.204 Section 270.204 Commerce and Foreign Trade Regulations Relating to... CONSTRUCTION SAFETY TEAMS NATIONAL CONSTRUCTION SAFETY TEAMS Investigations § 270.204 Provision of additional resources and services needed by a Team. The Director will determine the appropriate resources that a...

  1. An Introduction to "My Environmental Education Evaluation Resource Assistant" (MEERA), a Web-Based Resource for Self-Directed Learning about Environmental Education Program Evaluation

    ERIC Educational Resources Information Center

    Zint, Michaela

    2010-01-01

    My Environmental Education Evaluation Resource Assistant or "MEERA" is a web-site designed to support environmental educators' program evaluation activities. MEERA has several characteristics that set it apart from other self-directed learning evaluation resources. Readers are encouraged to explore the site and to reflect on the role that…

  2. A comprehensive view of the web-resources related to sericulture

    PubMed Central

    Singh, Deepika; Chetia, Hasnahana; Kabiraj, Debajyoti; Sharma, Swagata; Kumar, Anil; Sharma, Pragya; Deka, Manab; Bora, Utpal

    2016-01-01

    Recent progress in the field of sequencing and analysis has led to a tremendous spike in data and the development of data science tools. One of the outcomes of this scientific progress is development of numerous databases which are gaining popularity in all disciplines of biology including sericulture. As economically important organism, silkworms are studied extensively for their numerous applications in the field of textiles, biomaterials, biomimetics, etc. Similarly, host plants, pests, pathogens, etc. are also being probed to understand the seri-resources more efficiently. These studies have led to the generation of numerous seri-related databases which are extremely helpful for the scientific community. In this article, we have reviewed all the available online resources on silkworm and its related organisms, including databases as well as informative websites. We have studied their basic features and impact on research through citation count analysis, finally discussing the role of emerging sequencing and analysis technologies in the field of seri-data science. As an outcome of this review, a web portal named SeriPort, has been created which will act as an index for the various sericulture-related databases and web resources available in cyberspace. Database URL: http://www.seriport.in/ PMID:27307138

  3. A comprehensive view of the web-resources related to sericulture.

    PubMed

    Singh, Deepika; Chetia, Hasnahana; Kabiraj, Debajyoti; Sharma, Swagata; Kumar, Anil; Sharma, Pragya; Deka, Manab; Bora, Utpal

    2016-01-01

    Recent progress in the field of sequencing and analysis has led to a tremendous spike in data and the development of data science tools. One of the outcomes of this scientific progress is development of numerous databases which are gaining popularity in all disciplines of biology including sericulture. As economically important organism, silkworms are studied extensively for their numerous applications in the field of textiles, biomaterials, biomimetics, etc. Similarly, host plants, pests, pathogens, etc. are also being probed to understand the seri-resources more efficiently. These studies have led to the generation of numerous seri-related databases which are extremely helpful for the scientific community. In this article, we have reviewed all the available online resources on silkworm and its related organisms, including databases as well as informative websites. We have studied their basic features and impact on research through citation count analysis, finally discussing the role of emerging sequencing and analysis technologies in the field of seri-data science. As an outcome of this review, a web portal named SeriPort, has been created which will act as an index for the various sericulture-related databases and web resources available in cyberspace.Database URL: http://www.seriport.in/. PMID:27307138

  4. Uptake of Web-based clinical resources from the MacArthur Initiative on Depression and Primary Care.

    PubMed

    Han, Changsu; Voils, Corrine I; Williams, John W

    2013-04-01

    This study assessed the usability and desired enhancements for the MacArthur Foundation's Depression and Primary Care (MDPC) Web site to determine if resources for integrated depression care that are disseminated through the Web site are incorporated into routine clinical care. Since its launch in 2003, more than 20,000 users registered as members of the MDPC website to read and download depression care resources. Subjects were randomly selected from MDPC Web site users who had previously downloaded the depression toolkit. Web-based survey, which was administered anonymously, included the following domains: (1) socio-demographic data, (2) confidence in managing depression (3) Web site content and design features, (4) desired enhancements to Web site and content, (5) use of resources downloaded from the Web site, and (6) importance of depression care resources. Of the 3,478 randomly selected participants, 666 (19.1%) responded. Web site content was rated "good" or "excellent" for screening and diagnosis (84.3%), treatment (69.8%), patient education (66.2%), and care management (66.9%). The Patient Health Questionnaire-9 (PHQ-9) was rated "very useful" by 68.3%; 47.1% reported using it in at least 25% of encounters with patients who are depressed. PHQ-9 use was significantly associated with higher self-confidence in managing depression (P = 0.05). Evidence-based resources for depression care can be disseminated effectively through a dedicated Web site and may help clinicians incorporate effective care models into routine practice.

  5. Intermediate-consumer identity and resources alter a food web with omnivory.

    PubMed

    Kneitel, Jamie M

    2007-07-01

    1. Omnivory is an important interaction that has been the centre of numerous theoretical and empirical studies in recent years. Most of these studies examine the conditions necessary for coexistence between an omnivore and an intermediate consumer. Trait variation in ecological interactions (competition and predator tolerance) among intermediate consumers has not been considered in previous empirical studies despite the evidence that variation in species-specific traits can have important community-level effects. 2. I conducted a multifactorial microcosm experiment using species from the Sarracenia purpurea phytotelmata community, organisms that inhabit the water collected within its modified leaves. The basal trophic level consisted of bacterial decomposers, the second trophic level (intermediate consumers) consisted of protozoa and rotifers, and the third trophic level (omnivore) were larvae of the pitcher plant mosquito Wyeomyia smithii. Trophic level number (1, 2 and 3), resources (low and high), omnivore density (low and high) and intermediate consumer (monoculture of five protozoa and rotifers) identity were manipulated. Abundance of the basal trophic level, intermediate consumers, and growth of the omnivore were measured, as well as time to extinction (intermediate consumers) and time to pupation (mosquito larvae). 3. The presence of different intermediate consumers affected both bacteria abundance and omnivore growth. At high resource levels, Poteriochromonas, Colpidium and Habrotrocha rosa reduced bacteria densities greater than omnivore reduction of bacteria. Mosquito larvae did not pupate at low resource levels except when Poteriochromonas and Colopoda were present as intermediate consumers. Communities with H. rosa were the only ones consistent with the prediction that omnivores should exclude intermediate consumers at high resources. 4. These results had mixed support for predictions from omnivory food web theory. Intermediate consumers responded and

  6. Caught in the Web: The Impact of Library Instruction on Business Students' Perceptions and Use of Print and Online Resources.

    ERIC Educational Resources Information Center

    Lombardo, Shawn V.; Miree, Cynthia E.

    2003-01-01

    Describes a study that investigated whether library instruction could impact undergraduate business students' attitudes and uses of three information formats: print materials, library databases, and Web resources. Results indicate that after library instruction, student held more favorable attitudes toward print resources and used them more than…

  7. A case study of data integration for aquatic resources using semantic web technologies

    USGS Publications Warehouse

    Gordon, Janice M.; Chkhenkeli, Nina; Govoni, David L.; Lightsom, Frances L.; Ostroff, Andrea; Schweitzer, Peter N.; Thongsavanh, Phethala; Varanka, Dalia E.; Zednik, Stephan

    2015-01-01

    Use cases, information modeling, and linked data techniques are Semantic Web technologies used to develop a prototype system that integrates scientific observations from four independent USGS and cooperator data systems. The techniques were tested with a use case goal of creating a data set for use in exploring potential relationships among freshwater fish populations and environmental factors. The resulting prototype extracts data from the BioData Retrieval System, the Multistate Aquatic Resource Information System, the National Geochemical Survey, and the National Hydrography Dataset. A prototype user interface allows a scientist to select observations from these data systems and combine them into a single data set in RDF format that includes explicitly defined relationships and data definitions. The project was funded by the USGS Community for Data Integration and undertaken by the Community for Data Integration Semantic Web Working Group in order to demonstrate use of Semantic Web technologies by scientists. This allows scientists to simultaneously explore data that are available in multiple, disparate systems beyond those they traditionally have used.

  8. Teaching about sharing water resources using the web-based game Irrigania

    NASA Astrophysics Data System (ADS)

    Seibert, J.; Vis, M.

    2012-12-01

    For teaching about collaboration and conflicts with regard to shared water resources various types of games offer valuable opportunities. Single-player computer games often give much power to the player and ignore the fact that the best for some group might be difficult to achieve in reality if the individuals have their own interests. Here we present a game called Irrigania, which aims at representing water conflicts among several actors in a simplified way. While simple in its rules, this game illustrates several game-theoretical situations typical for water-related conflicts. The game has been implemented as a web-based computer game, which allows easy application in classes. First classroom applications of the game indicated that, despite the simple rules, interesting patterns can evolve when playing the game in a class. These patterns can be used to discuss game theoretical considerations related to water resource sharing.

  9. Cascading effects from predator removal depend on resource availability in a benthic food web.

    PubMed

    Sieben, Katrin; Rippen, Anneke D; Eriksson, Britas Klemens

    2011-01-01

    We tested joint effects of predator loss and increased resource availability on the grazers' trophic level and the propagation of trophic interactions in a benthic food web by excluding larger predatory fish from cages and manipulating nutrients in the coastal zone of the Baltic Sea. The combination of nutrient enrichment and excluding larger predators induced an increase in medium-sized predatory fish (three-spined stickleback). The meso-predator fish in turn did not change the total abundance of the invertebrate herbivores, but did cause a substantial shift in their community composition towards the dominance of gastropods by reducing amphipods by 40-60%, while gastropods were left unchanged. The shift in grazer composition generated a 23 times higher producer biomass, but only under nutrient enrichment. Our results show that top-predator declines can substantially shift the species composition at the grazers' level, but that cascading effects on producers by a trophic cascade strongly depend on resource availability.

  10. Innovation and design of a web-based pain education interprofessional resource

    PubMed Central

    Lax, Leila; Watt-Watson, Judy; Lui, Michelle; Dubrowski, Adam; McGillion, Michael; Hunter, Judith; MacLennan, Cameron; Knickle, Kerry; Robb, Anja; Lapeyre, Jaime

    2011-01-01

    INTRODUCTION: The present article describes educational innovation processes and design of a web-based pain interprofessional resource for prelicensure health science students in universities across Canada. Operationalization of educational theory in design coupled with formative evaluation of design are discussed, along with strategies that support collaborative innovation. METHODS: Educational design was driven by content, theory and evaluation. Pain misbeliefs and teaching points along the continuum from acute to persistent pain were identified. Knowledge-building theory, situated learning, reflection and novel designs for cognitive scaffolding were then employed. Design research principles were incorporated to inform iterative and ongoing design. RESULTS: An authentic patient case was constructed, situated in inter-professional complex care to highlight learning objectives related to pre-operative, postoperative and treatment up to one year, for a surgical cancer patient. Pain mechanisms, assessment and management framed content creation. Knowledge building scaffolds were used, which included video simulations, embedded resources, concurrent feedback, practice-based reflective exercises and commentaries. Scaffolds were refined to specifically support knowledge translation. Illustrative commentaries were designed to explicate pain misbeliefs and best practices. Architecture of the resource was mapped; a multimedia, interactive prototype was created. This pain education resource was developed primarily for individual use, with extensions for interprofessional collective discourse. DISCUSSION: Translation of curricular content scripts into representation maps supported the collaborative design process by establishing a common visual language. The web-based prototype will be formatively and summatively evaluated to assess pedagogic design, knowledge-translation scaffolds, pain knowledge gains, relevance, feasibility and fidelity of this educational innovation. PMID

  11. Quicker, slicker, and better? An evaluation of a web-based human resource management system

    NASA Astrophysics Data System (ADS)

    Gibb, Stephen; McBride, Andrew

    2001-10-01

    This paper reviews the design and development of a web based Human Resource Management (HRM) system which has as its foundation a 'capability profiler' tool for analysing individual or team roles in organisations. This provides a foundation for managing a set of integrated activities in recruitment and selection, performance and career management, and training and development for individuals, teams, and whole organisations. The challenges of representing and processing information about the human side of organisation encountered in the design and implementation of such systems are evident. There is a combination of legal, practical, technical and philosophical issues to be faced in the processes of defining roles, selecting staff, monitoring and managing the performance of employees in the design and implementation of such systems. The strengths and weaknesses of web based systems in this context are evaluated. This evaluation highlights both the potential, given the evolution of broader Enterprise Resource Planning (ERP) systems and strategies in manufacturing, and concerns about the migration of HRM processes to such systems.

  12. The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.

    PubMed

    Gifford, Lida K; Carter, Lester G; Gabanyi, Margaret J; Berman, Helen M; Adams, Paul D

    2012-06-01

    The Technology Portal of the Protein Structure Initiative Structural Biology Knowledgebase (PSI SBKB; http://technology.sbkb.org/portal/ ) is a web resource providing information about methods and tools that can be used to relieve bottlenecks in many areas of protein production and structural biology research. Several useful features are available on the web site, including multiple ways to search the database of over 250 technological advances, a link to videos of methods on YouTube, and access to a technology forum where scientists can connect, ask questions, get news, and develop collaborations. The Technology Portal is a component of the PSI SBKB ( http://sbkb.org ), which presents integrated genomic, structural, and functional information for all protein sequence targets selected by the Protein Structure Initiative. Created in collaboration with the Nature Publishing Group, the SBKB offers an array of resources for structural biologists, such as a research library, editorials about new research advances, a featured biological system each month, and a functional sleuth for searching protein structures of unknown function. An overview of the various features and examples of user searches highlight the information, tools, and avenues for scientific interaction available through the Technology Portal.

  13. The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes.

    PubMed

    Hamilton, John P; Neeno-Eckwall, Eric C; Adhikari, Bishwo N; Perna, Nicole T; Tisserat, Ned; Leach, Jan E; Lévesque, C André; Buell, C Robin

    2011-01-01

    The Comprehensive Phytopathogen Genomics Resource (CPGR) provides a web-based portal for plant pathologists and diagnosticians to view the genome and trancriptome sequence status of 806 bacterial, fungal, oomycete, nematode, viral and viroid plant pathogens. Tools are available to search and analyze annotated genome sequences of 74 bacterial, fungal and oomycete pathogens. Oomycete and fungal genomes are obtained directly from GenBank, whereas bacterial genome sequences are downloaded from the A Systematic Annotation Package (ASAP) database that provides curation of genomes using comparative approaches. Curated lists of bacterial genes relevant to pathogenicity and avirulence are also provided. The Plant Pathogen Transcript Assemblies Database provides annotated assemblies of the transcribed regions of 82 eukaryotic genomes from publicly available single pass Expressed Sequence Tags. Data-mining tools are provided along with tools to create candidate diagnostic markers, an emerging use for genomic sequence data in plant pathology. The Plant Pathogen Ribosomal DNA (rDNA) database is a resource for pathogens that lack genome or transcriptome data sets and contains 131 755 rDNA sequences from GenBank for 17 613 species identified as plant pathogens and related genera. Database URL: http://cpgr.plantbiology.msu.edu.

  14. Global-Scale Resource Survey and Performance Monitoring of Public OGC Web Map Services

    NASA Astrophysics Data System (ADS)

    Gui, Zhipeng; Cao, Jun; Liu, Xiaojing; Cheng, Xiaoqiang; Wu, Huayi

    2016-06-01

    One of the most widely-implemented service standards provided by the Open Geospatial Consortium (OGC) to the user community is the Web Map Service (WMS). WMS is widely employed globally, but there is limited knowledge of the global distribution, adoption status or the service quality of these online WMS resources. To fill this void, we investigated global WMSs resources and performed distributed performance monitoring of these services. This paper explicates a distributed monitoring framework that was used to monitor 46,296 WMSs continuously for over one year and a crawling method to discover these WMSs. We analyzed server locations, provider types, themes, the spatiotemporal coverage of map layers and the service versions for 41,703 valid WMSs. Furthermore, we appraised the stability and performance of basic operations for 1210 selected WMSs (i.e., GetCapabilities and GetMap). We discuss the major reasons for request errors and performance issues, as well as the relationship between service response times and the spatiotemporal distribution of client monitoring sites. This paper will help service providers, end users and developers of standards to grasp the status of global WMS resources, as well as to understand the adoption status of OGC standards. The conclusions drawn in this paper can benefit geospatial resource discovery, service performance evaluation and guide service performance improvements.

  15. Consumer-resource body-size relationships in natural food webs.

    PubMed

    Brose, Ulrich; Jonsson, Tomas; Berlow, Eric L; Warren, Philip; Banasek-Richter, Carolin; Bersier, Louis-Félix; Blanchard, Julia L; Brey, Thomas; Carpenter, Stephen R; Blandenier, Marie-France Cattin; Cushing, Lara; Dawah, Hassan Ali; Dell, Tony; Edwards, Francois; Harper-Smith, Sarah; Jacob, Ute; Ledger, Mark E; Martinez, Neo D; Memmott, Jane; Mintenbeck, Katja; Pinnegar, John K; Rall, Björn C; Rayner, Thomas S; Reuman, Daniel C; Ruess, Liliane; Ulrich, Werner; Williams, Richard J; Woodward, Guy; Cohen, Joel E

    2006-10-01

    It has been suggested that differences in body size between consumer and resource species may have important implications for interaction strengths, population dynamics, and eventually food web structure, function, and evolution. Still, the general distribution of consumer-'resource body-size ratios in real ecosystems, and whether they vary systematically among habitats or broad taxonomic groups, is poorly understood. Using a unique global database on consumer and resource body sizes, we show that the mean body-size ratios of aquatic herbivorous and detritivorous consumers are several orders of magnitude larger than those of carnivorous predators. Carnivorous predator-prey body-size ratios vary across different habitats and predator and prey types (invertebrates, ectotherm, and endotherm vertebrates). Predator-prey body-size ratios are on average significantly higher (1) in freshwater habitats than in marine or terrestrial habitats, (2) for vertebrate than for invertebrate predators, and (3) for invertebrate than for ectotherm vertebrate prey. If recent studies that relate body-size ratios to interaction strengths are general, our results suggest that mean consumer-resource interaction strengths may vary systematically across different habitat categories and consumer types.

  16. Effects of nitrate addition and iron speciation on trace element transfer in coastal food webs under phosphate and iron enrichment.

    PubMed

    Li, Shun-Xing; Liu, Feng-Jiao; Zheng, Feng-Ying; Zuo, Yue-Gang; Huang, Xu-Guang

    2013-06-01

    Coastal organisms are often exposed to both iron enrichment and eutrophication. Trace elements transfer in coastal food webs are critical for marine life and therefore influence coastal ecosystem function and the global carbon cycle. However, how these exposures affect algal element uptake and the subsequent element transfer to marine copepods (Tigriopus japonicus) is unknown. Here we investigated the effects of nitrate addition and iron speciation (Fe (OH)3 or EDTA-Fe) on the biological uptake of Cu, Zn, and Se under phosphate and iron enrichment, using Thalassiosira weissflogii, Skeletonema costatum, and Chlorella vulgaris as model marine algae. Algal element adsorption/absorption generally increased with increasing macronutrient concentrations. Algal element assimilation efficiencies depended on iron speciation and marine algae species. Element assimilation efficiencies of copepods were significantly correlated to the intracellular element concentrations in algal cells. Element uptake and transfer were controlled by eutrophication, iron speciation, and algal species in coastal food webs.

  17. Effects of nitrate addition and iron speciation on trace element transfer in coastal food webs under phosphate and iron enrichment.

    PubMed

    Li, Shun-Xing; Liu, Feng-Jiao; Zheng, Feng-Ying; Zuo, Yue-Gang; Huang, Xu-Guang

    2013-06-01

    Coastal organisms are often exposed to both iron enrichment and eutrophication. Trace elements transfer in coastal food webs are critical for marine life and therefore influence coastal ecosystem function and the global carbon cycle. However, how these exposures affect algal element uptake and the subsequent element transfer to marine copepods (Tigriopus japonicus) is unknown. Here we investigated the effects of nitrate addition and iron speciation (Fe (OH)3 or EDTA-Fe) on the biological uptake of Cu, Zn, and Se under phosphate and iron enrichment, using Thalassiosira weissflogii, Skeletonema costatum, and Chlorella vulgaris as model marine algae. Algal element adsorption/absorption generally increased with increasing macronutrient concentrations. Algal element assimilation efficiencies depended on iron speciation and marine algae species. Element assimilation efficiencies of copepods were significantly correlated to the intracellular element concentrations in algal cells. Element uptake and transfer were controlled by eutrophication, iron speciation, and algal species in coastal food webs. PMID:23332676

  18. Organising access to Evidence-Based Medicine resources on the Web.

    PubMed

    Delvenne, Catherine; Pasleau, Françoise

    2003-05-01

    The continuing education is a challenge for health care professionals, considering the growing amount and variable quality of information in this field. In this context, we developed a method allowing clinicians to have a centralised access to the best current medical evidence supporting medical decision-making. Relevant data has been gathered according to the rules stated for Evidence-Based Medicine (EBM) and organised in a free-of-charge Web site, created by using common software applications. The general aim of our study was to encourage individual practice of EBM by providing tutorials as well as a selection of free access tools for searching medical information on the Web. In addition to the education part, we provided clinicians, through a Web interface, with up-to-date, accurate and quality data obtained from heterogeneous sources and presented in a full text format when available. The developed methodology has been applied to human prostate cancer. URL address: http://www.ebm.lib.ulg.ac.be/prostate/index.htm.

  19. Additives

    NASA Technical Reports Server (NTRS)

    Smalheer, C. V.

    1973-01-01

    The chemistry of lubricant additives is discussed to show what the additives are chemically and what functions they perform in the lubrication of various kinds of equipment. Current theories regarding the mode of action of lubricant additives are presented. The additive groups discussed include the following: (1) detergents and dispersants, (2) corrosion inhibitors, (3) antioxidants, (4) viscosity index improvers, (5) pour point depressants, and (6) antifouling agents.

  20. Web-Based Geospatial Tools to Address Hazard Mitigation, Natural Resource Management, and Other Societal Issues

    USGS Publications Warehouse

    Hearn,, Paul P.

    2009-01-01

    Federal, State, and local government agencies in the United States face a broad range of issues on a daily basis. Among these are natural hazard mitigation, homeland security, emergency response, economic and community development, water supply, and health and safety services. The U.S. Geological Survey (USGS) helps decision makers address these issues by providing natural hazard assessments, information on energy, mineral, water and biological resources, maps, and other geospatial information. Increasingly, decision makers at all levels are challenged not by the lack of information, but by the absence of effective tools to synthesize the large volume of data available, and to utilize the data to frame policy options in a straightforward and understandable manner. While geographic information system (GIS) technology has been widely applied to this end, systems with the necessary analytical power have been usable only by trained operators. The USGS is addressing the need for more accessible, manageable data tools by developing a suite of Web-based geospatial applications that will incorporate USGS and cooperating partner data into the decision making process for a variety of critical issues. Examples of Web-based geospatial tools being used to address societal issues follow.

  1. STITCHER: A web resource for high-throughput design of primers for overlapping PCR applications.

    PubMed

    O'Halloran, Damien M

    2015-06-01

    Overlapping PCR is routinely used in a wide number of molecular applications. These include stitching PCR fragments together, generating fluorescent transcriptional and translational fusions, inserting mutations, making deletions, and PCR cloning. Overlapping PCR is also used for genotyping by traditional PCR techniques and in detection experiments using techniques such as loop-mediated isothermal amplification (LAMP). STITCHER is a web tool providing a central resource for researchers conducting all types of overlapping PCR experiments with an intuitive interface for automated primer design that's fast, easy to use, and freely available online (http://ohalloranlab.net/STITCHER.html). STITCHER can handle both single sequence and multi-sequence input, and specific features facilitate numerous other PCR applications, including assembly PCR, adapter PCR, and primer walking. Field PCR, and in particular, LAMP, offers promise as an on site tool for pathogen detection in underdeveloped areas, and STITCHER includes off-target detection features for pathogens commonly targeted using LAMP technology.

  2. Where to find a mate? Resource-based sexual communication of webbing clothes moth

    NASA Astrophysics Data System (ADS)

    Takács, Stephen; Gries, Gerhard; Gries, Regine

    2002-02-01

    Mate location in moths typically entails long-range attraction of males to female-produced pheromone. Here, we show that male and female webbing clothes moths, Tineola bisselliella, seek larval habitats (dry carrion, animal lairs, etc) to encounter mates. With males seeking, and arriving at, larval habitat earlier at night than females, male-produced pheromonal and sonic signals enhance the habitat's attractiveness to females. This resource-based mating strategy of T. bisselliella differs from that known for most other moths. It may have evolved in response to larval habitats that are patchy and temporary, but that disseminate attractive semiochemicals so abundantly that T. bisselliella encounter them more readily than their own pheromones.

  3. A Secure Web Application Providing Public Access to High-Performance Data Intensive Scientific Resources - ScalaBLAST Web Application

    SciTech Connect

    Curtis, Darren S.; Peterson, Elena S.; Oehmen, Chris S.

    2008-05-04

    This work presents the ScalaBLAST Web Application (SWA), a web based application implemented using the PHP script language, MySQL DBMS, and Apache web server under a GNU/Linux platform. SWA is an application built as part of the Data Intensive Computer for Complex Biological Systems (DICCBS) project at the Pacific Northwest National Laboratory (PNNL). SWA delivers accelerated throughput of bioinformatics analysis via high-performance computing through a convenient, easy-to-use web interface. This approach greatly enhances emerging fields of study in biology such as ontology-based homology, and multiple whole genome comparisons which, in the absence of a tool like SWA, require a heroic effort to overcome the computational bottleneck associated with genome analysis. The current version of SWA includes a user account management system, a web based user interface, and a backend process that generates the files necessary for the Internet scientific community to submit a ScalaBLAST parallel processing job on a dedicated cluster.

  4. StreamStats in North Carolina: a water-resources Web application

    USGS Publications Warehouse

    Weaver, J. Curtis; Terziotti, Silvia; Kolb, Katharine R.; Wagner, Chad R.

    2012-01-01

    A statewide StreamStats application for North Carolina was developed in cooperation with the North Carolina Department of Transportation following completion of a pilot application for the upper French Broad River basin in western North Carolina (Wagner and others, 2009). StreamStats for North Carolina, available at http://water.usgs.gov/osw/streamstats/north_carolina.html, is a Web-based Geographic Information System (GIS) application developed by the U.S. Geological Survey (USGS) in consultation with Environmental Systems Research Institute, Inc. (Esri) to provide access to an assortment of analytical tools that are useful for water-resources planning and management (Ries and others, 2008). The StreamStats application provides an accurate and consistent process that allows users to easily obtain streamflow statistics, basin characteristics, and descriptive information for USGS data-collection sites and user-selected ungaged sites. In the North Carolina application, users can compute 47 basin characteristics and peak-flow frequency statistics (Weaver and others, 2009; Robbins and Pope, 1996) for a delineated drainage basin. Selected streamflow statistics and basin characteristics for data-collection sites have been compiled from published reports and also are immediately accessible by querying individual sites from the web interface. Examples of basin characteristics that can be computed in StreamStats include drainage area, stream slope, mean annual precipitation, and percentage of forested area (Ries and others, 2008). Examples of streamflow statistics that were previously available only through published documents include peak-flow frequency, flow-duration, and precipitation data. These data are valuable for making decisions related to bridge design, floodplain delineation, water-supply permitting, and sustainable stream quality and ecology. The StreamStats application also allows users to identify stream reaches upstream and downstream from user-selected sites

  5. Climate Discovery: Integrating Research With Exhibit, Public Tours, K-12, and Web-based EPO Resources

    NASA Astrophysics Data System (ADS)

    Foster, S. Q.; Carbone, L.; Gardiner, L.; Johnson, R.; Russell, R.; Advisory Committee, S.; Ammann, C.; Lu, G.; Richmond, A.; Maute, A.; Haller, D.; Conery, C.; Bintner, G.

    2005-12-01

    The Climate Discovery Exhibit at the National Center for Atmospheric Research (NCAR) Mesa Lab provides an exciting conceptual outline for the integration of several EPO activities with other well-established NCAR educational resources and programs. The exhibit is organized into four topic areas intended to build understanding among NCAR's 80,000 annual visitors, including 10,000 school children, about Earth system processes and scientific methods contributing to a growing body of knowledge about climate and global change. These topics include: 'Sun-Earth Connections,' 'Climate Now,' 'Climate Past,' and 'Climate Future.' Exhibit text, graphics, film and electronic media, and interactives are developed and updated through collaborations between NCAR's climate research scientists and staff in the Office of Education and Outreach (EO) at the University Corporation for Atmospheric Research (UCAR). With funding from NCAR, paleoclimatologists have contributed data and ideas for a new exhibit Teachers' Guide unit about 'Climate Past.' This collection of middle-school level, standards-aligned lessons are intended to help students gain understanding about how scientists use proxy data and direct observations to describe past climates. Two NASA EPO's have funded the development of 'Sun-Earth Connection' lessons, visual media, and tips for scientists and teachers. Integrated with related content and activities from the NASA-funded Windows to the Universe web site, these products have been adapted to form a second unit in the Climate Discovery Teachers' Guide about the Sun's influence on Earth's climate. Other lesson plans, previously developed by on-going efforts of EO staff and NSF's previously-funded Project Learn program are providing content for a third Teachers' Guide unit on 'Climate Now' - the dynamic atmospheric and geological processes that regulate Earth's climate. EO has plans to collaborate with NCAR climatologists and computer modelers in the next year to develop

  6. OWL (On-Lie Webstories for Learning): A Unique Web-based Literacy Resource for Primary/Elementary Children.

    ERIC Educational Resources Information Center

    Juliebo, Moira; Durnford, Carol

    2000-01-01

    Describes Online Webstories for Learning (OWL), a Web-based resource for elementary school literacy education that was initially developed for use in the United Kingdom. Discusses the importance of including narrative, how OWL is being adapted for use in other countries, and off-line class activities suggested as part of OWL. (Contains 8…

  7. Human Trafficking in the United States. Part II. Survey of U.S. Government Web Resources for Publications and Data

    ERIC Educational Resources Information Center

    Panigabutra-Roberts, Anchalee

    2012-01-01

    This second part of a two-part series is a survey of U.S. government web resources on human trafficking in the United States, particularly of the online publications and data included on agencies' websites. Overall, the goal is to provide an introduction, an overview, and a guide on this topic for library staff to use in their research and…

  8. WormClassroom.org: An Inquiry-Rich Educational Web Portal for Research Resources of "Caenorhabditis elegans"

    ERIC Educational Resources Information Center

    Lu, Fong-Mei; Eliceiri, Kevin W.; Stewart, James; White, John G.

    2007-01-01

    The utilization of biology research resources, coupled with a "learning by inquiry" approach, has great potential to aid students in gaining an understanding of fundamental biological principles. To help realize this potential, we have developed a Web portal for undergraduate biology education, WormClassroom.org, based on current research…

  9. Why Can't I Find Newton's Third Law? Case Studies of Students' Use of the Web as a Science Resource.

    ERIC Educational Resources Information Center

    MaKinster, James G.; Beghetto, Ronald A.; Plucker, Jonathan A.

    2002-01-01

    Examines searching patterns of students using the Web as science information resources. Attempts to provide detailed accounts of how students use the Web as a science resource and illuminate how the different levels of domain knowledge and expertise, and situational interest impact students' ability to find useful and relevant information on the…

  10. Histology on the World Wide Web: A Digest of Resources for Students and Teachers.

    ERIC Educational Resources Information Center

    Cotter, John R.

    1997-01-01

    Provides a list of 37 World Wide Web sites that are devoted to instruction in histology and include electronic manuals, syllabi, atlases, image galleries, and quizzes. Reviews the topics, content, and highlights of these Web sites. (DDR)

  11. Becoming Literate in the Ways of the Web: Evaluating Internet Resources.

    ERIC Educational Resources Information Center

    Patterson, Nancy

    2003-01-01

    Suggests three main characteristics middle school students can look for when deciding whether a Web site has reliable information. Encourages students to "Think APE": Author, Purpose, and Expiration date. Presents an annotated list of eight Web sites to help build Web literacy. (SG)

  12. Users' Interaction with World Wide Web Resources: An Exploratory Study Using a Holistic Approach.

    ERIC Educational Resources Information Center

    Wang, Peiling; Hawk, William B.; Tenopir, Carol

    2000-01-01

    Presents results of a study that explores factors of user-Web interaction in finding factual information, develops a conceptual framework for studying user-Web interaction, and applies a process-tracing method for conducting holistic user-Web studies. Describes measurement techniques and proposes a model consisting of the user, interface, and the…

  13. SLA-based optimisation of virtualised resource for multi-tier web applications in cloud data centres

    NASA Astrophysics Data System (ADS)

    Bi, Jing; Yuan, Haitao; Tie, Ming; Tan, Wei

    2015-10-01

    Dynamic virtualised resource allocation is the key to quality of service assurance for multi-tier web application services in cloud data centre. In this paper, we develop a self-management architecture of cloud data centres with virtualisation mechanism for multi-tier web application services. Based on this architecture, we establish a flexible hybrid queueing model to determine the amount of virtual machines for each tier of virtualised application service environments. Besides, we propose a non-linear constrained optimisation problem with restrictions defined in service level agreement. Furthermore, we develop a heuristic mixed optimisation algorithm to maximise the profit of cloud infrastructure providers, and to meet performance requirements from different clients as well. Finally, we compare the effectiveness of our dynamic allocation strategy with two other allocation strategies. The simulation results show that the proposed resource allocation method is efficient in improving the overall performance and reducing the resource energy cost.

  14. Unravelling the role of allochthonous aquatic resources to food web structure in a tropical riparian forest.

    PubMed

    Recalde, Fátima C; Postali, Thaís C; Romero, Gustavo Q

    2016-03-01

    The role of matter and energy flow across ecosystem boundaries for the subsidized consumer populations is well known. However, little is known on the effects of allochthonous subsidies on food web structure and trophic niche dimensions of consumers in the tropics. We excluded allochthonous aquatic insects from tropical streams using greenhouse-type exclosures to test the influence of aquatic allochthonous subsidies on the trophic structure and niche dimensions of terrestrial predators using stable isotope methods. In exclosure treatments, abundance and biomass of terrestrial predators, and biomass of phytophages decreased and increased, respectively. Vegetation-living predators were more responsive to allochthonous inputs than those living on the ground. Overall, lower availability of allochthonous inputs did not affect community-wide metrics and niche width of predators. However, the niche width of some spider families had very low overlap between treatments, and others had wider isotopic niches in the control than in the exclusion treatment. Most of the C and N in predators living in control stretches came from aquatic subsidies, and those predators living in the exclusion treatments switched their diets to terrestrial sources, showing a preference of predators for allochthonous subsidies. Our results suggest that allochthonous subsidies are also relevant to tropical fauna living upon vegetation. Moreover, allochthonous resources may amplify the niche dimension of certain predators or considerably change the trophic niche of others. Our study highlights the importance of including modern isotopic tools in elucidating the role of allochthonous resources on the patterns of trophic structure and niche dimensions of consumers from donor ecosystems. PMID:26590144

  15. De novo transcriptome assembly of a fern, Lygodium japonicum, and a web resource database, Ljtrans DB.

    PubMed

    Aya, Koichiro; Kobayashi, Masaaki; Tanaka, Junmu; Ohyanagi, Hajime; Suzuki, Takayuki; Yano, Kenji; Takano, Tomoyuki; Yano, Kentaro; Matsuoka, Makoto

    2015-01-01

    During plant evolution, ferns originally evolved as a major vascular plant with a distinctive life cycle in which the haploid and diploid generations are completely separated. However, the low level of genetic resources has limited studies of their physiological events, as well as hindering research on the evolutionary history of land plants. In this study, to identify a comprehensive catalog of transcripts and characterize their expression traits in the fern Lygodium japonicum, nine different RNA samples isolated from prothalli, trophophylls, rhizomes and sporophylls were sequenced using Roche 454 GS-FLX and Illumina HiSeq sequencers. The hybrid assembly of the high-quality 454 GS-FLX and Illumina HiSeq reads generated a set of 37,830 isoforms with an average length of 1,444 bp. Using four open reading frame (ORF) predictors, 38,142 representative ORFs were identified from a total of 37,830 transcript isoforms and 95 contigs, which were annotated by searching against several public databases. Furthermore, an orthoMCL analysis using the protein sequences of L. japonicum and five model plants revealed various sets of lineage-specific genes, including those detected among land plant lineages and those detected in only L. japonicum. We have also examined the expression patterns of all contigs/isoforms, along with the life cycle of L. japonicum, and identified the tissue-specific transcripts using statistical expression analyses. Finally, we developed a public web resource, the L. japonicum transcriptome database at http://bioinf.mind.meiji.ac.jp/kanikusa/, which provides important opportunities to accelerate molecular research in ferns.

  16. Resources allocation in healthcare for cancer: a case study using generalised additive mixed models.

    PubMed

    Musio, Monica; Sauleau, Erik A; Augustin, Nicole H

    2012-11-01

    Our aim is to develop a method for helping resources re-allocation in healthcare linked to cancer, in order to replan the allocation of providers. Ageing of the population has a considerable impact on the use of health resources because aged people require more specialised medical care due notably to cancer. We propose a method useful to monitor changes of cancer incidence in space and time taking into account two age categories, according to healthcar general organisation. We use generalised additive mixed models with a Poisson response, according to the methodology presented in Wood, Generalised additive models: an introduction with R. Chapman and Hall/CRC, 2006. Besides one-dimensional smooth functions accounting for non-linear effects of covariates, the space-time interaction can be modelled using scale invariant smoothers. Incidence data collected by a general cancer registry between 1992 and 2007 in a specific area of France is studied. Our best model exhibits a strong increase of the incidence of cancer along time and an obvious spatial pattern for people more than 70 years with a higher incidence in the central band of the region. This is a strong argument for re-allocating resources for old people cancer care in this sub-region. PMID:23242683

  17. Resources allocation in healthcare for cancer: a case study using generalised additive mixed models.

    PubMed

    Musio, Monica; Sauleau, Erik A; Augustin, Nicole H

    2012-11-01

    Our aim is to develop a method for helping resources re-allocation in healthcare linked to cancer, in order to replan the allocation of providers. Ageing of the population has a considerable impact on the use of health resources because aged people require more specialised medical care due notably to cancer. We propose a method useful to monitor changes of cancer incidence in space and time taking into account two age categories, according to healthcar general organisation. We use generalised additive mixed models with a Poisson response, according to the methodology presented in Wood, Generalised additive models: an introduction with R. Chapman and Hall/CRC, 2006. Besides one-dimensional smooth functions accounting for non-linear effects of covariates, the space-time interaction can be modelled using scale invariant smoothers. Incidence data collected by a general cancer registry between 1992 and 2007 in a specific area of France is studied. Our best model exhibits a strong increase of the incidence of cancer along time and an obvious spatial pattern for people more than 70 years with a higher incidence in the central band of the region. This is a strong argument for re-allocating resources for old people cancer care in this sub-region.

  18. OPM database and PPM web server: resources for positioning of proteins in membranes

    PubMed Central

    Lomize, Mikhail A.; Pogozheva, Irina D.; Joo, Hyeon; Mosberg, Henry I.; Lomize, Andrei L.

    2012-01-01

    The Orientations of Proteins in Membranes (OPM) database is a curated web resource that provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization. OPM currently contains more than 1200 transmembrane and peripheral proteins and peptides from approximately 350 organisms that represent approximately 3800 Protein Data Bank entries. Proteins are classified into classes, superfamilies and families and assigned to 21 distinct membrane types. Spatial positions of proteins with respect to the lipid bilayer are optimized by the PPM 2.0 method that accounts for the hydrophobic, hydrogen bonding and electrostatic interactions of the proteins with the anisotropic water-lipid environment described by the dielectric constant and hydrogen-bonding profiles. The OPM database is freely accessible at http://opm.phar.umich.edu. Data can be sorted, searched or retrieved using the hierarchical classification, source organism, localization in different types of membranes. The database offers downloadable coordinates of proteins and peptides with membrane boundaries. A gallery of protein images and several visualization tools are provided. The database is supplemented by the PPM server (http://opm.phar.umich.edu/server.php) which can be used for calculating spatial positions in membranes of newly determined proteins structures or theoretical models. PMID:21890895

  19. Synergy: a web resource for exploring gene regulation in Synechocystis sp. PCC6803.

    PubMed

    Mähler, Niklas; Cheregi, Otilia; Funk, Christiane; Netotea, Sergiu; Hvidsten, Torgeir R

    2014-01-01

    Despite being a highly studied model organism, most genes of the cyanobacterium Synechocystis sp. PCC 6803 encode proteins with completely unknown function. To facilitate studies of gene regulation in Synechocystis, we have developed Synergy (http://synergy.plantgenie.org), a web application integrating co-expression networks and regulatory motif analysis. Co-expression networks were inferred from publicly available microarray experiments, while regulatory motifs were identified using a phylogenetic footprinting approach. Automatically discovered motifs were shown to be enriched in the network neighborhoods of regulatory proteins much more often than in the neighborhoods of non-regulatory genes, showing that the data provide a sound starting point for studying gene regulation in Synechocystis. Concordantly, we provide several case studies demonstrating that Synergy can be used to find biologically relevant regulatory mechanisms in Synechocystis. Synergy can be used to interactively perform analyses such as gene/motif search, network visualization and motif/function enrichment. Considering the importance of Synechocystis for photosynthesis and biofuel research, we believe that Synergy will become a valuable resource to the research community.

  20. A Policy Based Approach for the Management of Web Browser Resources to Prevent Anonymity Attacks in Tor

    NASA Astrophysics Data System (ADS)

    Navarro-Arribas, Guillermo; Garcia-Alfaro, Joaquin

    Web browsers are becoming the universal interface to reach applications and services related with these systems. Different browsing contexts may be required in order to reach them, e.g., use of VPN tunnels, corporate proxies, anonymisers, etc. By browsing context we mean how the user browsers the Web, including mainly the concrete configuration of its browser. When the context of the browser changes, its security requirements also change. In this work, we present the use of authorisation policies to automatise the process of controlling the resources of a Web browser when its context changes. The objective of our proposal is oriented towards easing the adaptation to the security requirements of the new context and enforce them in the browser without the need for user intervention. We present a concrete application of our work as a plug-in for the adaption of security requirements in Mozilla/Firefox browser when a context of anonymous navigation through the Tor network is enabled.

  1. Chronic fatigue syndrome and fibromyalgia resources on the world wide web: a descriptive journey.

    PubMed

    Gantz, N M; Coldsmith, E E

    2001-03-15

    A wealth of information on chronic fatigue syndrome (CFS) and fibromyalgia is available on the World Wide Web for health care providers and patients. These illnesses have overlapping features, and their etiologies remain unknown. Multiple Web sites were reviewed, and selected sites providing useful information were identified. Sites were classified according to their content and target audience and were judged according to suggested standards of Internet publishing. Fifty-eight sites were classified into groups as follows: comprehensive and research Web sites for CFS and fibromyalgia, meetings, clinical trials, literature search services, bibliographies, journal, and CFS and fibromyalgia Web sites for the patient. PMID:11247716

  2. Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud.

    PubMed

    Griffith, Malachi; Walker, Jason R; Spies, Nicholas C; Ainscough, Benjamin J; Griffith, Obi L

    2015-08-01

    Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for interrogating RNA transcript abundance and diversity. This article provides a detailed introduction to fundamental RNA-seq molecular biology and informatics concepts. We make available open-access RNA-seq tutorials that cover cloud computing, tool installation, relevant file formats, reference genomes, transcriptome annotations, quality-control strategies, expression, differential expression, and alternative splicing analysis methods. These tutorials and additional training resources are accompanied by complete analysis pipelines and test datasets made available without encumbrance at www.rnaseq.wiki.

  3. Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

    PubMed Central

    Griffith, Malachi; Walker, Jason R.; Spies, Nicholas C.; Ainscough, Benjamin J.; Griffith, Obi L.

    2015-01-01

    Massively parallel RNA sequencing (RNA-seq) has rapidly become the assay of choice for interrogating RNA transcript abundance and diversity. This article provides a detailed introduction to fundamental RNA-seq molecular biology and informatics concepts. We make available open-access RNA-seq tutorials that cover cloud computing, tool installation, relevant file formats, reference genomes, transcriptome annotations, quality-control strategies, expression, differential expression, and alternative splicing analysis methods. These tutorials and additional training resources are accompanied by complete analysis pipelines and test datasets made available without encumbrance at www.rnaseq.wiki. PMID:26248053

  4. Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

    PubMed Central

    Engström, Pär G; Fredman, David; Lenhard, Boris

    2008-01-01

    Metazoan genomes contain arrays of highly conserved noncoding elements (HCNEs) that span developmental regulatory genes and define regulatory domains. We describe Ancora , a web resource that provides data and tools for exploring genomic organization of HCNEs for multiple genomes. Ancora includes a genome browser that shows HCNE locations and features novel HCNE density plots as a powerful tool to discover developmental regulatory genes and distinguish their regulatory elements and domains. PMID:18279518

  5. Alice in Web Wonderland: Internet Resources for Middle Schoolers and Their Teachers.

    ERIC Educational Resources Information Center

    Rowlands, Kathleen Dudden

    2000-01-01

    Discusses 7 questions developed by the author to evaluate web sites. Offers a list of 42 web sites in several categories useful to middle school teachers both for classroom use and professional development: super-linkers (indexes of useful sites); reference materials; writing instruction; literacy, reading, and literature; and educational…

  6. Teaching with Web-Based Videos: Helping Students Grasp the Science in Popular Online Resources

    ERIC Educational Resources Information Center

    Pace, Barbara G.; Jones, Linda Cronin

    2009-01-01

    Today, the use of web-based videos in science classrooms is becoming more and more commonplace. However, these videos are often fast-paced and information rich--science concepts can be fragmented and embedded within larger cultural issues. This article addresses the cognitive difficulties posed by many web-based science videos. Drawing on concepts…

  7. Geographic Resources on the Web: Bringing the World to Your Classroom.

    ERIC Educational Resources Information Center

    Green, Tim

    2001-01-01

    Presents an annotated bibliography of Web sites that can be useful for geography classroom teachers and of interest to students. Includes Web sites for the United States Geological Survey, the Central Intelligence Agency, University of Wisconsin-Stevens Point, and GlobeXplorer. (CMK)

  8. Resource Needs and Pedagogical Value of Web Mapping for Spatial Thinking

    ERIC Educational Resources Information Center

    Manson, Steven; Shannon, Jerry; Eria, Sami; Kne, Len; Dyke, Kevin; Nelson, Sara; Batra, Lalit; Bonsal, Dudley; Kernik, Melinda; Immich, Jennifer; Matson, Laura

    2014-01-01

    Web mapping involves publishing and using maps via the Internet, and can range from presenting static maps to offering dynamic data querying and spatial analysis. Web mapping is seen as a promising way to support development of spatial thinking in the classroom but there are unanswered questions about how this promise plays out in reality. This…

  9. Adolescents on the Net: Reproductive and Sexual Health. Web Resources, Series One.

    ERIC Educational Resources Information Center

    United Nations Educational, Scientific and Cultural Organization, Bangkok (Thailand). Principal Regional Office for Asia and the Pacific.

    This document announces web sites that address adolescent reproductive and sexual health. The web sites are arranged alphabetically by name, and refer to the owner of the site rather than the title. The profile of each site consists of basic information such as the address of the organization or owner, fax number, telephone number, e-mail address,…

  10. A sea urchin genome project: sequence scan, virtual map, and additional resources.

    PubMed

    Cameron, R A; Mahairas, G; Rast, J P; Martinez, P; Biondi, T R; Swartzell, S; Wallace, J C; Poustka, A J; Livingston, B T; Wray, G A; Ettensohn, C A; Lehrach, H; Britten, R J; Davidson, E H; Hood, L

    2000-08-15

    Results of a first-stage Sea Urchin Genome Project are summarized here. The species chosen was Strongylocentrotus purpuratus, a research model of major importance in developmental and molecular biology. A virtual map of the genome was constructed by sequencing the ends of 76,020 bacterial artificial chromosome (BAC) recombinants (average length, 125 kb). The BAC-end sequence tag connectors (STCs) occur an average of 10 kb apart, and, together with restriction digest patterns recorded for the same BAC clones, they provide immediate access to contigs of several hundred kilobases surrounding any gene of interest. The STCs survey >5% of the genome and provide the estimate that this genome contains approximately 27,350 protein-coding genes. The frequency distribution and canonical sequences of all middle and highly repetitive sequence families in the genome were obtained from the STCs as well. The 500-kb Hox gene complex of this species is being sequenced in its entirety. In addition, arrayed cDNA libraries of >10(5) clones each were constructed from every major stage of embryogenesis, several individual cell types, and adult tissues and are available to the community. The accumulated STC data and an expanding expressed sequence tag database (at present including >12, 000 sequences) have been reported to GenBank and are accessible on public web sites.

  11. Developing a web-based information resource for palliative care: an action-research inspired approach

    PubMed Central

    Street, Annette F; Swift, Kathleen; Annells, Merilyn; Woodruff, Roger; Gliddon, Terry; Oakley, Anne; Ottman, Goetz

    2007-01-01

    Background General Practitioners and community nurses rely on easily accessible, evidence-based online information to guide practice. To date, the methods that underpin the scoping of user-identified online information needs in palliative care have remained under-explored. This paper describes the benefits and challenges of a collaborative approach involving users and experts that informed the first stage of the development of a palliative care website [1]. Method The action research-inspired methodology included a panel assessment of an existing palliative care website based in Victoria, Australia; a pre-development survey (n = 197) scoping potential audiences and palliative care information needs; working parties conducting a needs analysis about necessary information content for a redeveloped website targeting health professionals and caregivers/patients; an iterative evaluation process involving users and experts; as well as a final evaluation survey (n = 166). Results Involving users in the identification of content and links for a palliative care website is time-consuming and requires initial resources, strong networking skills and commitment. However, user participation provided crucial information that led to the widened the scope of the website audience and guided the development and testing of the website. The needs analysis underpinning the project suggests that palliative care peak bodies need to address three distinct audiences (clinicians, allied health professionals as well as patients and their caregivers). Conclusion Web developers should pay close attention to the content, language, and accessibility needs of these groups. Given the substantial cost associated with the maintenance of authoritative health information sites, the paper proposes a more collaborative development in which users can be engaged in the definition of content to ensure relevance and responsiveness, and to eliminate unnecessary detail. Access to volunteer networks forms an

  12. IMGT-ONTOLOGY and IMGT databases, tools and Web resources for immunogenetics and immunoinformatics.

    PubMed

    Lefranc, Marie-Paule

    2004-01-01

    The international ImMunoGeneTics information system (IMGT; http://imgt.cines.fr), is a high quality integrated information system specialized in immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC), and related proteins of the immune system (RPI) of human and other vertebrates, created in 1989, by the Laboratoire d'ImmunoGénétique Moléculaire (LIGM; Université Montpellier II and CNRS) at Montpellier, France. IMGT provides a common access to standardized data which include nucleotide and protein sequences, oligonucleotide primers, gene maps, genetic polymorphisms, specificities, 2D and 3D structures. IMGT consists of several sequence databases (IMGT/LIGM-DB, IMGT/MHC-DB, IMGT/PRIMER-DB), one genome database (IMGT/GENE-DB) and one 3D structure database (IMGT/3Dstructure-DB), interactive tools for sequence analysis (IMGT/V-QUEST, IMGT/JunctionAnalysis, IMGT/PhyloGene, IMGT/Allele-Align), for genome analysis (IMGT/GeneSearch, IMGT/GeneView, IMGT/LocusView) and for 3D structure analysis (IMGT/StructuralQuery), and Web resources ("IMGT Marie-Paule page") comprising 8000 HTML pages. IMGT other accesses include SRS, FTP, search by BLAST, etc. By its high quality and its easy data distribution, IMGT has important implications in medical research (repertoire in autoimmune diseases, AIDS, leukemias, lymphomas, myelomas), veterinary research, genome diversity and genome evolution studies of the adaptive immune responses, biotechnology related to antibody engineering (single chain Fragment variable (scFv), phage displays, combinatorial libraries) and therapeutical approaches (grafts, immunotherapy). IMGT is freely available at http://imgt.cines.fr.

  13. A Critical Study of Effect of Web-Based Software Tools in Finding and Sharing Digital Resources--A Literature Review

    ERIC Educational Resources Information Center

    Baig, Muntajeeb Ali

    2010-01-01

    The purpose of this paper is to review the effect of web-based software tools for finding and sharing digital resources. A positive correlation between learning and studying through online tools has been found in recent researches. In traditional classroom, searching resources are limited to the library and sharing of resources is limited to the…

  14. Incrementality and additionality: A new dimension to North-South resource transfers

    SciTech Connect

    Jordan, A. . School of Environmental Sciences); Werksman, J. . Foundation for International Environmental Law and Development)

    1994-06-01

    In the last four years, incrementality'' and additionality'' have emerged as new terms in the evolving lexicon of international environmental diplomacy. As Parties to the Conventions on Climate Change, Biodiversity and the Ozone Layer, industrialized states undertake to provide sufficient additional resources (the principle of additionality) to meet the incremental cost (the concept of incrementality) of measures undertaken by the developing countries to tackle global environmental problems. Issues of incrementality and additionality go to the heart of a much deeper and highly contentious debate on who should pay the costs of responding to global environmental problems; on how the payment should be made; on which agency or agencies should manage the transfers; and upon which parties should be compensated. Every sign is that if the overall North to South transfer breaks down or is retarded, then the process of implementing the aforementioned agreements may be jeopardized. This paper reviews the emergency of the two terms in international environmental politics; it pinpoints the theoretical and practical difficulties of defining and implementing them; and it assesses whether these difficulties and conflicts of opinion may, in some manner, be resolved.

  15. CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis

    PubMed Central

    Ochoa-Montaño, Bernardo; Mohan, Nishita; Blundell, Tom L.

    2015-01-01

    Tuberculosis kills more than a million people annually and presents increasingly high levels of resistance against current first line drugs. Structural information about Mycobacterium tuberculosis (Mtb) proteins is a valuable asset for the development of novel drugs and for understanding the biology of the bacterium; however, only about 10% of the ∼4000 proteins have had their structures determined experimentally. The CHOPIN database assigns structural domains and generates homology models for 2911 sequences, corresponding to ∼73% of the proteome. A sophisticated pipeline allows multiple models to be created using conformational states characteristic of different oligomeric states and ligand binding, such that the models reflect various functional states of the proteins. Additionally, CHOPIN includes structural analyses of mutations potentially associated with drug resistance. Results are made available at the web interface, which also serves as an automatically updated repository of all published Mtb experimental structures. Its RESTful interface allows direct and flexible access to structures and metadata via intuitive URLs, enabling easy programmatic use of the models. Database URL: http://structure.bioc.cam.ac.uk/chopin PMID:25833954

  16. CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis.

    PubMed

    Ochoa-Montaño, Bernardo; Mohan, Nishita; Blundell, Tom L

    2015-01-01

    Tuberculosis kills more than a million people annually and presents increasingly high levels of resistance against current first line drugs. Structural information about Mycobacterium tuberculosis (Mtb) proteins is a valuable asset for the development of novel drugs and for understanding the biology of the bacterium; however, only about 10% of the ∼4000 proteins have had their structures determined experimentally. The CHOPIN database assigns structural domains and generates homology models for 2911 sequences, corresponding to ∼73% of the proteome. A sophisticated pipeline allows multiple models to be created using conformational states characteristic of different oligomeric states and ligand binding, such that the models reflect various functional states of the proteins. Additionally, CHOPIN includes structural analyses of mutations potentially associated with drug resistance. Results are made available at the web interface, which also serves as an automatically updated repository of all published Mtb experimental structures. Its RESTful interface allows direct and flexible access to structures and metadata via intuitive URLs, enabling easy programmatic use of the models.

  17. StreamStats in Georgia: a water-resources web application

    USGS Publications Warehouse

    Gotvald, Anthony J.; Musser, Jonathan W.

    2015-07-31

    StreamStats is being implemented on a State-by-State basis to allow for customization of the data development and underlying datasets to address their specific needs, issues, and objectives. The USGS, in cooperation with the Georgia Environmental Protection Division and Georgia Department of Transportation, has implemented StreamStats for Georgia. The Georgia StreamStats Web site is available through the national StreamStats Web-page portal at http://streamstats.usgs.gov. Links are provided on this Web page for individual State applications, instructions for using StreamStats, definitions of basin characteristics and streamflow statistics, and other supporting information.

  18. Variation in active and passive resource inputs to experimental pools: mechanisms and possible consequences for food webs

    USGS Publications Warehouse

    Kraus, Johanna M.; Pletcher, Leanna T.; Vonesh, James R.

    2010-01-01

    1. Cross-ecosystem movements of resources, including detritus, nutrients and living prey, can strongly influence food web dynamics in recipient habitats. Variation in resource inputs is thought to be driven by factors external to the recipient habitat (e.g. donor habitat productivity and boundary conditions). However, inputs of or by ‘active’ living resources may be strongly influenced by recipient habitat quality when organisms exhibit behavioural habitat selection when crossing ecosystem boundaries. 2. To examine whether behavioural responses to recipient habitat quality alter the relative inputs of ‘active’ living and ‘passive’ detrital resources to recipient food webs, we manipulated the presence of caged predatory fish and measured biomass, energy and organic content of inputs to outdoor experimental pools of adult aquatic insects, frog eggs, terrestrial plant matter and terrestrial arthropods. 3. Caged fish reduced the biomass, energy and organic matter donated to pools by tree frog eggs by ∼70%, but did not alter insect colonisation or passive allochthonous inputs of terrestrial arthropods and plant material. Terrestrial plant matter and adult aquatic insects provided the most energy and organic matter inputs to the pools (40–50%), while terrestrial arthropods provided the least (7%). Inputs of frog egg were relatively small but varied considerably among pools and over time (3%, range = 0–20%). Absolute and proportional amounts varied by input type. 4. Aquatic predators can strongly affect the magnitude of active, but not passive, inputs and that the effect of recipient habitat quality on active inputs is variable. Furthermore, some active inputs (i.e. aquatic insect colonists) can provide similar amounts of energy and organic matter as passive inputs of terrestrial plant matter, which are well known to be important. Because inputs differ in quality and the trophic level they subsidise, proportional changes in input type could have

  19. Resources

    MedlinePlus

    ... Breastfeeding - resources Bulimia - resources Burns - resources Cancer - resources Cerebral palsy - resources Celiac disease - resources Child abuse - resources Chronic fatigue syndrome - resources Chronic pain - ...

  20. Applying Web Service on the Simulation and Demonstration for Groundwater Resources

    NASA Astrophysics Data System (ADS)

    liu, H.; Wang, H.; Chang, L.

    2013-12-01

    This study uses web service technology to reach following goals: (1) unified data format, (2) cross-platform data input/output, (3) linkage to pre-developed groundwater simulation model with database, and (4) friendly cross-platform user interface. With this web service technology, users can remotely (1) read, extract, manage, and display groundwater related data and (2) run the selected groundwater simulation model. In this study, three web formats are provided for different needs: (1)website, (2) the format for mobile devices, and (3) the interface for researchers. For the first two formats, the users can visualize the selected data or model results. The web format allows users to browse it using commonly available browsers. The Android system is used for the second format, which is for mobile devices, simplifying the data demonstration process. Investigators can use mobile devices to show space information, groundwater level, and hydrogeological parameters. The third format provides professional researchers to use the provided API to access massive groundwater related data and parameters. The developed web service is applied to Pingtong groundwater area to simulate multiple groundwater flow scenarios and show the simulation results.

  1. MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to Facilitate Genomic Investigations in Mitochondrial Disease.

    PubMed

    Shen, Lishuang; Diroma, Maria Angela; Gonzalez, Michael; Navarro-Gomez, Daniel; Leipzig, Jeremy; Lott, Marie T; van Oven, Mannis; Wallace, Douglas C; Muraresku, Colleen Clarke; Zolkipli-Cunningham, Zarazuela; Chinnery, Patrick F; Attimonelli, Marcella; Zuchner, Stephan; Falk, Marni J; Gai, Xiaowu

    2016-06-01

    MSeqDR is the Mitochondrial Disease Sequence Data Resource, a centralized and comprehensive genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. A central Web portal (https://mseqdr.org) integrates community knowledge from expert-curated databases with genomic and phenotype data shared by clinicians and researchers. MSeqDR also functions as a centralized application server for Web-based tools to analyze data across both mitochondrial and nuclear DNA, including investigator-driven whole exome or genome dataset analyses through MSeqDR-Genesis. MSeqDR-GBrowse genome browser supports interactive genomic data exploration and visualization with custom tracks relevant to mtDNA variation and mitochondrial disease. MSeqDR-LSDB is a locus-specific database that currently manages 178 mitochondrial diseases, 1,363 genes associated with mitochondrial biology or disease, and 3,711 pathogenic variants in those genes. MSeqDR Disease Portal allows hierarchical tree-style disease exploration to evaluate their unique descriptions, phenotypes, and causative variants. Automated genomic data submission tools are provided that capture ClinVar compliant variant annotations. PhenoTips will be used for phenotypic data submission on deidentified patients using human phenotype ontology terminology. The development of a dynamic informed patient consent process to guide data access is underway to realize the full potential of these resources.

  2. MSeqDR: A Centralized Knowledge Repository and Bioinformatics Web Resource to Facilitate Genomic Investigations in Mitochondrial Disease.

    PubMed

    Shen, Lishuang; Diroma, Maria Angela; Gonzalez, Michael; Navarro-Gomez, Daniel; Leipzig, Jeremy; Lott, Marie T; van Oven, Mannis; Wallace, Douglas C; Muraresku, Colleen Clarke; Zolkipli-Cunningham, Zarazuela; Chinnery, Patrick F; Attimonelli, Marcella; Zuchner, Stephan; Falk, Marni J; Gai, Xiaowu

    2016-06-01

    MSeqDR is the Mitochondrial Disease Sequence Data Resource, a centralized and comprehensive genome and phenome bioinformatics resource built by the mitochondrial disease community to facilitate clinical diagnosis and research investigations of individual patient phenotypes, genomes, genes, and variants. A central Web portal (https://mseqdr.org) integrates community knowledge from expert-curated databases with genomic and phenotype data shared by clinicians and researchers. MSeqDR also functions as a centralized application server for Web-based tools to analyze data across both mitochondrial and nuclear DNA, including investigator-driven whole exome or genome dataset analyses through MSeqDR-Genesis. MSeqDR-GBrowse genome browser supports interactive genomic data exploration and visualization with custom tracks relevant to mtDNA variation and mitochondrial disease. MSeqDR-LSDB is a locus-specific database that currently manages 178 mitochondrial diseases, 1,363 genes associated with mitochondrial biology or disease, and 3,711 pathogenic variants in those genes. MSeqDR Disease Portal allows hierarchical tree-style disease exploration to evaluate their unique descriptions, phenotypes, and causative variants. Automated genomic data submission tools are provided that capture ClinVar compliant variant annotations. PhenoTips will be used for phenotypic data submission on deidentified patients using human phenotype ontology terminology. The development of a dynamic informed patient consent process to guide data access is underway to realize the full potential of these resources. PMID:26919060

  3. [Gastroenterology 2.0: useful resources for the gastroenterologist available on the Web 2.0].

    PubMed

    Curioso, Walter H; Proaño, Alvaro; Ruiz, Eloy F

    2011-01-01

    The term Web 2.0 refers to the use of Internet applications which enable the users to share, participate and collaborate together on information. The objective of this study is to check different applications that use Web 2.0, which could help the gastroenterologist in his daily practice. The applications that will be checked include: blogs, microblogging, RSS, podcasts, wikis and social networks. "Gastroenterology 2.0" represents the applications, services, and tools based on Web 2.0, which are of easy use and easily accessible - to consumers, patients, gastroenterologists and other health professionals, as well as researchers. Although several studies have shown the benefits these technologies have on the medical practice, it is necessary to conduct further studies to demonstrate the use of these applications on improving health.

  4. Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources.

    PubMed

    García-Sánchez, Francisco; Fernández-Breis, Jesualdo Tomás; Valencia-García, Rafael; Gómez, Juan Miguel; Martínez-Béjar, Rodrigo

    2008-10-01

    The increasing volume and diversity of information in biomedical research is demanding new approaches for data integration in this domain. Semantic Web technologies and applications can leverage the potential of biomedical information integration and discovery, facing the problem of semantic heterogeneity of biomedical information sources. In such an environment, agent technology can assist users in discovering and invoking the services available on the Internet. In this paper we present SEMMAS, an ontology-based, domain-independent framework for seamlessly integrating Intelligent Agents and Semantic Web Services. Our approach is backed with a proof-of-concept implementation where the breakthrough and efficiency of integrating disparate biomedical information sources have been tested.

  5. The Full Monty: Locating Resources, Creating, and Presenting a Web Enhanced History Course.

    ERIC Educational Resources Information Center

    Bazillion, Richard J.; Braun, Connie L.

    2001-01-01

    Discusses how to develop a history course using the World Wide Web; course development software; full text digitized articles, electronic books, primary documents, images, and audio files; and computer equipment such as LCD projectors and interactive whiteboards. Addresses the importance of support for faculty using technology in teaching. (PAL)

  6. The Living Textbook of Nuclear Chemistry: A Peer-Reviewed, Web-Based, Education Resource

    ERIC Educational Resources Information Center

    Loveland, W.; Gallant, A.; Joiner, C.

    2004-01-01

    The recent developments in nuclear chemistry education are presented and an attempt is made to collect supplemental materials relating to the study and practice of nuclear chemistry. The Living Textbook of Nuclear Chemistry functions as an authoritative Web site with supplemental material for teaching nuclear and radiochemistry.

  7. Teaching with the World Wide Web: Internet Resources for Educators in Illinois Schools.

    ERIC Educational Resources Information Center

    Barker, Bruce O.; Hall, Robert F.

    1998-01-01

    This report focuses on teaching with the World Wide Web. An introduction describes the Illinois State Board of Education's (ISBE's) efforts in urging local schools to integrate information technology into all aspects of their curriculum and in emphasizing the need for technology-focused staff development for Illinois teachers. ISBE supports…

  8. Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics.

    PubMed

    Dao, Tien Tuan; Hoang, Tuan Nha; Ta, Xuan Hien; Tho, Marie Christine Ho Ba

    2013-02-01

    Human musculoskeletal system resources of the human body are valuable for the learning and medical purposes. Internet-based information from conventional search engines such as Google or Yahoo cannot response to the need of useful, accurate, reliable and good-quality human musculoskeletal resources related to medical processes, pathological knowledge and practical expertise. In this present work, an advanced knowledge-based personalized search engine was developed. Our search engine was based on a client-server multi-layer multi-agent architecture and the principle of semantic web services to acquire dynamically accurate and reliable HMSR information by a semantic processing and visualization approach. A security-enhanced mechanism was applied to protect the medical information. A multi-agent crawler was implemented to develop a content-based database of HMSR information. A new semantic-based PageRank score with related mathematical formulas were also defined and implemented. As the results, semantic web service descriptions were presented in OWL, WSDL and OWL-S formats. Operational scenarios with related web-based interfaces for personal computers and mobile devices were presented and analyzed. Functional comparison between our knowledge-based search engine, a conventional search engine and a semantic search engine showed the originality and the robustness of our knowledge-based personalized search engine. In fact, our knowledge-based personalized search engine allows different users such as orthopedic patient and experts or healthcare system managers or medical students to access remotely into useful, accurate, reliable and good-quality HMSR information for their learning and medical purposes. PMID:23149160

  9. Knowledge-based personalized search engine for the Web-based Human Musculoskeletal System Resources (HMSR) in biomechanics.

    PubMed

    Dao, Tien Tuan; Hoang, Tuan Nha; Ta, Xuan Hien; Tho, Marie Christine Ho Ba

    2013-02-01

    Human musculoskeletal system resources of the human body are valuable for the learning and medical purposes. Internet-based information from conventional search engines such as Google or Yahoo cannot response to the need of useful, accurate, reliable and good-quality human musculoskeletal resources related to medical processes, pathological knowledge and practical expertise. In this present work, an advanced knowledge-based personalized search engine was developed. Our search engine was based on a client-server multi-layer multi-agent architecture and the principle of semantic web services to acquire dynamically accurate and reliable HMSR information by a semantic processing and visualization approach. A security-enhanced mechanism was applied to protect the medical information. A multi-agent crawler was implemented to develop a content-based database of HMSR information. A new semantic-based PageRank score with related mathematical formulas were also defined and implemented. As the results, semantic web service descriptions were presented in OWL, WSDL and OWL-S formats. Operational scenarios with related web-based interfaces for personal computers and mobile devices were presented and analyzed. Functional comparison between our knowledge-based search engine, a conventional search engine and a semantic search engine showed the originality and the robustness of our knowledge-based personalized search engine. In fact, our knowledge-based personalized search engine allows different users such as orthopedic patient and experts or healthcare system managers or medical students to access remotely into useful, accurate, reliable and good-quality HMSR information for their learning and medical purposes.

  10. An hydrogeological web-gis platform for water resource management and consensus reaching at the basin scale

    NASA Astrophysics Data System (ADS)

    Pierleoni, A.; Bellezza, M.; Casagrande, L.; Casadei, S.

    2009-04-01

    Water resource management at the basin scale involves a variety of uses of the resource and a multiplicity of different scenarios concerning the schematization of the hydrographical network, representing an interesting issue, also because it is becoming very actual in Mediterranean countries where water contributions to river basins are more and more concentrated in short wet periods followed by longer periods of droughts. When severe droughts occur, the problem can be split depending whether or not large reservoirs are present in the basin. In the first case, the problem mainly regards long term management of the stored water; in the second case, emergency interventions must be taken into consideration. However, a management involves three fundamental stages: the first is the evaluation of the available water resources; the second is the integrated management of these resources, with particular attention given to hypotheses for developments in water usage and the occurrence of critical deficit periods and the third is the consensus reaching amongst all the parties concerned. For these purposes an integrated WEB-BASED system has been designed and developed starting from the principles of an integrated water resources management, information and methodologies sharing and consensus reaching. The system is therefore composed of three logical areas: the first of the three is the modelling engine for the evaluation of hydrologic indexes and flow duration curves that, starting from the data contained in a wide validated database of hydrogeological, geospatial and administrative information and with the support of a Grass GIS system for terrain analysis, is capable of providing an estimate of the available resource. The second one is represented by a simulation and managing model that allows the analysis of different and alternative scenarios of water allocation and distribution amongst the uses present in the basin. Finally a user friendly WEB interface grants access not

  11. Journal searching in non-MEDLINE resources on Internet Web sites.

    PubMed

    Lingle, V A

    1997-01-01

    Internet access to the medical journal literature is absorbing the attention of all relevant parties, i.e., publishers, journal vendors, librarians, commercial providers, government agencies, and end users. Journal content on the Web sites spans the range from advertising and ordering information for the print version, to table of contents and abstracts, to downloadable full text and graphics of articles. The searching parameters for systems other than MEDLINE also differ extensively with a wide variety of features and resulting retrieval. This discussion reviews a selection of providers of medical information (particularly the journal literature) on the Internet, making a comparison of what is available on Web sites and how it can be searched. PMID:10173597

  12. Web Pages: An Effective Method of Providing CAI Resource Material in Histology.

    ERIC Educational Resources Information Center

    McLean, Michelle

    2001-01-01

    Presents research that introduces computer-aided instruction (CAI) resource material as an integral part of the second-year histology course at the University of Natal Medical School. Describes the ease with which this software can be developed, using limited resources and available skills, while providing students with valuable learning…

  13. WormClassroom.org: An Inquiry-rich Educational Web Portal for Research Resources of Caenorhabditis elegans

    PubMed Central

    Lu, Fong-Mei; Stewart, James; White, John G.

    2007-01-01

    The utilization of biology research resources, coupled with a “learning by inquiry” approach, has great potential to aid students in gaining an understanding of fundamental biological principles. To help realize this potential, we have developed a Web portal for undergraduate biology education, WormClassroom.org, based on current research resources of a model research organism, Caenorhabditis elegans. This portal is intended to serve as a resource gateway for students to learn biological concepts using C. elegans research material. The driving forces behind the WormClassroom website were the strengths of C. elegans as a teaching organism, getting researchers and educators to work together to develop instructional materials, and the 3 P's (problem posing, problem solving, and peer persuasion) approach for inquiry learning. Iterative assessment is an important aspect of the WormClassroom site development because it not only ensures that content is up-to-date and accurate, but also verifies that it does, in fact, aid student learning. A primary assessment was performed to refine the WormClassroom website utilizing undergraduate biology students and nonstudent experts such as C. elegans researchers; results and comments were used for site improvement. We are actively encouraging continued resource contributions from the C. elegans research and education community for the further development of WormClassroom. PMID:17548872

  14. eMental Health Experiences and Expectations: A Survey of Youths' Web-Based Resource Preferences in Canada

    PubMed Central

    Mar, Marissa Y; Neilson, Erika K; Werker, Gregory R; Krausz, Michael

    2014-01-01

    Background Due to the high prevalence of psychological disorders and the lack of access to care among Canadian youth, the development of accessible services is increasingly important. eMental Health is an expanding field that may help to meet this need through the provision of mental health care using technology. Objective The primary goals of the study are to explore youth experiences with traditional and online mental health resources, and to investigate youth expectations for mental health websites. Methods A Web-based survey containing quantitative and qualitative questions was delivered to youth aged 17-24 years. Participants were surveyed to evaluate their use of mental health resources as well as their preferences for various components of a potential mental health website. Results A total of 521 surveys were completed. Most participants (61.6%, 321/521) indicated that they had used the Internet to seek information or help for feelings they were experiencing. If they were going through a difficult time, 82.9% (432/521) of participants were either “somewhat likely” or “very likely” to use an information-based website and 76.8% (400/521) reported that they were either “somewhat unlikely” or “very unlikely” to visit social media websites for information or help-seeking purposes during this time. Most (87.7%, 458/521) participants rated their online privacy as very important. Descriptions of interventions and treatments was the most highly rated feature to have in a mental health-related website, with 91.9% (479/521) of participants regarding it as “important” or “very important”. When presented a select list of existing Canadian mental health-related websites, most participants had not accessed any of the sites. Of the few who had, the Canadian Mental Health Association website was the most accessed website (5.8%, 30/521). Other mental health-related websites were accessed by only 10.9% of the participants (57/521). Conclusions The

  15. AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource

    PubMed Central

    Scarpato, Margherita; Esposito, Roberta; Evangelista, Daniela; Aprile, Marianna; Ambrosio, Maria Rosaria; Angelini, Claudia; Ciccodicola, Alfredo; Costa, Valerio

    2014-01-01

    Transcriptome studies have shown the pervasive nature of transcription, demonstrating almost all the genes undergo alternative splicing. Accurately annotating all transcripts of a gene is crucial. It is needed to understand the impact of mutations on phenotypes, to shed light on genetic and epigenetic regulation of mRNAs and more generally to widen our knowledge about cell functionality and tissue diversity. RNA-sequencing (RNA-Seq), and the other applications of the next-generation sequencing, provides precious data to improve annotations' accuracy, simultaneously creating issues related to the variety, complexity and the size of produced data. In this ‘scenario’, the lack of user-friendly resources, easily accessible to researchers with low skills in bioinformatics, makes difficult to retrieve complete information about one or few genes without browsing a jungle of databases. Concordantly, the increasing amount of data from ‘omics’ technologies imposes to develop integrated databases merging different data formats coming from distinct but complementary sources. In light of these considerations, and given the wide interest in studying Down syndrome—a genetic condition due to the trisomy of human chromosome 21 (HSA21)—we developed an integrated relational database and a web interface, named ALE-HSA21 (AnaLysis of Expression on HSA21), accessible at http://bioinfo.na.iac.cnr.it/ALE-HSA21. This comprehensive and user-friendly web resource integrates—for all coding and noncoding transcripts of chromosome 21—existing gene annotations and transcripts identified de novo through RNA-Seq analysis with predictive computational analysis of regulatory sequences. Given the role of noncoding RNAs and untranslated regions of coding genes in key regulatory mechanisms, ALE-HSA21 is also an interesting web-based platform to investigate such processes. The ‘transcript-centric’ and easily-accessible nature of ALE-HSA21 makes this resource a valuable tool to

  16. Analysis of the effects of section 29 tax credits on reserve additions and production of gas from unconventional resources

    SciTech Connect

    Not Available

    1990-09-01

    Federal tax credits for production of natural gas from unconventional resources can stimulate drilling and reserves additions at a relatively low cost to the Treasury. This report presents the results of an analysis of the effects of a proposed extension of the Section 29 alternative fuels production credit specifically for unconventional gas. ICF Resources estimated the net effect of the extension of the credit (the difference between development activity expected with the extension of the credit and that expected if the credit expires in December 1990 as scheduled). The analysis addressed the effect of tax credits on project economics and capital formation, drilling and reserve additions, production, impact on the US and regional economies, and the net public sector costs and incremental revenues. The analysis was based on explicit modeling of the three dominant unconventional gas resources: Tight sands, coalbed methane, and Devonian shales. It incorporated the most current data on resource size, typical well recoveries and economics, and anticipated activity of the major producers. Each resource was further disaggregated for analysis based on distinct resource characteristics, development practices, regional economics, and historical development patterns.

  17. HolisticKids.org--evolution of information resources in pediatric complementary and alternative medicine projects: from monographs to Web learning.

    PubMed

    Whelan, Julia S; Dvorkin, Lana

    2003-10-01

    Use of complementary and alternative medicine (CAM) is growing in the United States. Children are a part of this trend, with adolescent self-care exceeding adult use. As a result, the necessity of educating pediatricians on CAM practices has become clear. This paper describes the Pediatric Integrative Medicine Education (PIME) project with a focus on the creation of HolisticKids.org, a Website designed to educate pediatric residents. HolisticKids.org also addresses the needs and interests of medical students, fellows, faculty, and community-based care providers who work with children and CAM. An outstanding aspect of this effort is its interdisciplinary nature, involving physicians, pharmacists, dieticians, nurses, medical librarians, and Web specialists. Collaboration is mirrored on an institutional level, where the participating institutions include Children's Hospital Boston, Harvard Medical School, Boston Medical Center, the Massachusetts College of Pharmacy and Health Sciences, and Dana Farber Cancer Institute. Now in the third year of development, this Web-based education project demonstrates how integrative medical education can contribute to pediatric care for diverse families and complement cultural competency efforts. Ongoing efforts focus on adding content, developing evaluation techniques, and disseminating this resource to the health sciences community.

  18. Indexing method of digital audiovisual medical resources with semantic Web integration.

    PubMed

    Cuggia, Marc; Mougin, Fleur; Le Beux, Pierre

    2005-03-01

    Digitalization of audiovisual resources and network capability offer many possibilities which are the subject of intensive work in scientific and industrial sectors. Indexing such resources is a major challenge. Recently, the Motion Pictures Expert Group (MPEG) has developed MPEG-7, a standard for describing multimedia content. The goal of this standard is to develop a rich set of standardized tools to enable efficient retrieval from digital archives or the filtering of audiovisual broadcasts on the Internet. How could this kind of technology be used in the medical context? In this paper, we propose a simpler indexing system, based on the Dublin Core standard and compliant to MPEG-7. We use MeSH and the UMLS to introduce conceptual navigation. We also present a video-platform which enables encoding and gives access to audiovisual resources in streaming mode. PMID:15694622

  19. Indexing method of digital audiovisual medical resources with semantic Web integration.

    PubMed

    Cuggia, Marc; Mougin, Fleur; Le Beux, Pierre

    2003-01-01

    Digitalization of audio-visual resources combined with the performances of the networks offer many possibilities which are the subject of intensive work in the scientific and industrial sectors. Indexing such resources is a major challenge. Recently, the Motion Pictures Expert Group (MPEG) has been developing MPEG-7, a standard for describing multimedia content. The good of this standard is to develop a rich set of standardized tools to enable fast efficient retrieval from digital archives or filtering audiovisual broadcasts on the internet. How this kind of technologies could be used in the medical context? In this paper, we propose a simpler indexing system, based on Dublin Core standard and complaint to MPEG-7. We use MeSH and UMLS to introduce conceptual navigation. We also present a video-platform with enables to encode and give access to audio-visual resources in streaming mode. PMID:14664072

  20. Education for Homeless Adults: Strategies for Implementation. Volume II - Resources and Additional Lessons.

    ERIC Educational Resources Information Center

    Hudson River Center for Program Development, Glenmont, NY.

    This document, the second in a series of guidebooks that were developed for educators of homeless adults in New York, offers strategies and plans for sample lessons in which a holistic approach is used to help homeless adults and families improve their lives through education. The guidebook begins with lists of print and nonprint resources,…

  1. The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

    PubMed

    Yoshida, Catherine E; Kruczkiewicz, Peter; Laing, Chad R; Lingohr, Erika J; Gannon, Victor P J; Nash, John H E; Taboada, Eduardo N

    2016-01-01

    For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS) promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution and outbreak analysis. We present the Salmonella In Silico Typing Resource (SISTR), a bioinformatics platform for rapidly performing simultaneous in silico analyses for several leading subtyping methods on draft Salmonella genome assemblies. In addition to performing serovar prediction by genoserotyping, this resource integrates sequence-based typing analyses for: Multi-Locus Sequence Typing (MLST), ribosomal MLST (rMLST), and core genome MLST (cgMLST). We show how phylogenetic context from cgMLST analysis can supplement the genoserotyping analysis and increase the accuracy of in silico serovar prediction to over 94.6% on a dataset comprised of 4,188 finished genomes and WGS draft assemblies. In addition to allowing analysis of user-uploaded whole-genome assemblies, the SISTR platform incorporates a database comprising over 4,000 publicly available genomes, allowing users to place their isolates in a broader phylogenetic and epidemiological context. The resource incorporates several metadata driven visualizations to examine the phylogenetic, geospatial and temporal distribution of genome-sequenced isolates. As sequencing of Salmonella isolates at public health laboratories around the world becomes increasingly common, rapid in silico analysis of minimally processed draft genome assemblies provides a powerful approach for molecular epidemiology in support of public health investigations. Moreover, this type of integrated analysis using multiple sequence-based methods of sub

  2. A web resource on DNA tests for canine and feline hereditary diseases

    PubMed Central

    Slutsky, Jeffrey; Raj, Karthik; Yuhnke, Scott; Bell, Jerold; Fretwell, Neale; Hedhammar, Ake; Wade, Claire; Giger, Urs

    2013-01-01

    Following the first identification of a disease-causing mutation in dogs in 1989 and the more recent completion of canine and feline genome sequences, much progress has been made in the molecular characterization of hereditary diseases in dogs and cats. To increase access to information on diagnosing hereditary diseases in dogs and cats, a web application has been developed to collect, organize and display information on available DNA tests and other supporting information, including gene and chromosomal locations, mutations, primary research citations and disease descriptions. The DNA testing information can be accessed at the URL: http://research.vet.upenn.edu/WSAVA-LabSearch. There are currently 131 molecular genetic tests available for hereditary diseases in dogs and cats offered by 43 laboratories worldwide. This tool should provide clinicians, researchers, breeders and companion animal owners with a single comprehensive, up-to-date and readily searchable webpage for information on hereditary disease testing. PMID:23582432

  3. Mars Mineral Spectroscopy Web Site: A Resource for Remote Planetary Spectroscopy

    NASA Technical Reports Server (NTRS)

    Dyar, M. D.; Schaefer, M. W.; Griswold, J. L.; Hanify, K. M.; Rothstein, Y.

    2004-01-01

    A web site dedicated to Mars Mineral Spectroscopy has been established at http://www.mtholyoke.edu/go/mars. Its goal is to provide an easily accessible data set of Mossbauer spectra of minerals collected over a range of temperatures, to provide suitable analog spectra for data acquired on remote surfaces such as Mars. Complementing these data (eventually) will be both reflectance FTIR data, collected at Brown University's RELAB facility, and Raman spectra to be collected by Jill Pasteris at Washington University St. Louis. Through our Education link, we provide information for those wishing to learn about how Mossbauer and other types of spectroscopy work. Our emphasis is to study only well-characterized mineral samples that represent typical rock-forming occurrences such as might exist on Mars and other terrestrial bodies in our solar system.

  4. EVpedia: A community web resource for prokaryotic and eukaryotic extracellular vesicles research.

    PubMed

    Kim, Dae-Kyum; Lee, Jaewook; Simpson, Richard J; Lötvall, Jan; Gho, Yong Song

    2015-04-01

    For cell-to-cell communication, all living cells including archaea, bacteria, and eukaryotes secrete nano-sized membrane vesicles into the extracellular space. These extracellular vesicles harbor specific subsets of proteins, mRNAs, miRNAs, lipids, and metabolites that represent their cellular status. These vesicle-specific cargos are considered as novel diagnostic biomarkers as well as therapeutic targets. With the advancement in high-throughput technologies on multiomics studies and improvements in bioinformatics approaches, a huge number of vesicular proteins, mRNAs, miRNAs, lipids, and metabolites have been identified, and our understanding of these complex extracellular organelles has considerably increased during these past years. In this review, we highlight EVpedia (http://evpedia.info), a community web portal for systematic analyses of prokaryotic and eukaryotic extracellular vesicles research.

  5. Interlinking Educational Resources and the Web of Data: A Survey of Challenges and Approaches

    ERIC Educational Resources Information Center

    Dietze, Stefan; Sanchez-Alonso, Salvador; Ebner, Hannes; Yu, Hong Qing; Giordano, Daniela; Marenzi, Ivana; Nunes, Bernardo Pereira

    2013-01-01

    Purpose: Research in the area of technology-enhanced learning (TEL) throughout the last decade has largely focused on sharing and reusing educational resources and data. This effort has led to a fragmented landscape of competing metadata schemas, or interface mechanisms. More recently, semantic technologies were taken into account to improve…

  6. Monitoring Web Site Usage of e-Bug: A Hygiene and Antibiotic Awareness Resource for Children

    PubMed Central

    Rajapandian, Vijayamaharaj; Eley, Charlotte V; Hoekstra, Beverley A; Lecky, Donna M; McNulty, Cliodna AM

    2015-01-01

    Background e-Bug is an educational resource which teaches children and young people about microbes, hygiene, infection, and prudent antibiotic use. The e-Bug resources are available in over 22 different languages and they are used widely across the globe. The resources can be accessed from the e-Bug website. Objective The objective of this study was to analyze the usage of the e-Bug website in order to understand how users access the website, where and when they access the site, and to review variation in use across the different areas of the site. Methods The usage statistics for the e-Bug website were monitored by Google Analytics between September 2010 and August 2013. Results The statistics show the website had over 324,000 visits during the three years, from just under 250,000 visitors, with the number of visitors increasing year after year. Visitors accessed the website from 211 different countries, with more than 267,000 documents downloaded. The majority of visitors were from the United Kingdom and visited the English website, although countries such as France and Portugal were also frequent visitors. Conclusions These website statistics confirm that e-Bug is frequently used across Europe and highlight that e-Bug use has expanded across the world. The findings from this report will be used to inform future modifications or updates to the materials, as well as the development of new educational resources. PMID:26567127

  7. Effect of Personality on the Use and Perceived Utility of Web-Based Health Resources

    ERIC Educational Resources Information Center

    Hruska, Natalie

    2012-01-01

    Studies document numerous threats to human health exacerbated by multiple factors, including inadequate access to health-related information. The Internet has developed as one resource to provide health information; however, there remains a significant gap in understanding how personality differences influence the use and perceived utility of the…

  8. Constructing Web Subject Gateways Using Dublin Core, the Resource Description Framework and Topic Maps

    ERIC Educational Resources Information Center

    Tramullas, Jesus; Garrido, Piedad

    2006-01-01

    Introduction: Specialised subject gateways have become an essential tool for locating and accessing digital information resources, with the added value of organisation and previous evaluation catering for the needs of the varying communities using these. Within the framework of a research project on the subject, a software tool has been developed…

  9. The Business Value Web: Resourcing Business Processes and Solutions in Higher Education

    ERIC Educational Resources Information Center

    Norris, Donald M.; Olson, Mark A.

    2003-01-01

    Value is the benefit derived from an enterprise's assets by its stakeholders. For colleges and universities, value is derived by students, faculty, staff, other knowledge seekers, alumni, donors, suppliers, and stakeholders. They derive value through experiencing the institution's programs, services, knowledge assets, and other resources. This…

  10. A Selection of Gilded-Age Resources on the World Wide Web.

    ERIC Educational Resources Information Center

    Lewis, Alison

    1999-01-01

    Provides a collection of websites on the Gilded Age that include lesson plans, a chronology, electronic texts, and other resources. Offers a variety of topics such as, but not limited to, African American history, coal mining, political cartoons, architecture, bibliographical information on public figures, and the Spanish-American War. (CMK)

  11. Web-Based Training Design for Human Resources Topics: A Case Study

    ERIC Educational Resources Information Center

    Hsieh, Patricia Yee

    2004-01-01

    Human resources (HR) departments are often responsible for providing employee and supervisory training in soft skill areas-such as performance management-and in compliance with HR-related laws, such as the Family and Medical Leave Act. Traditionally, this training has occurred in classrooms. In recent years, however, HR departments have made…

  12. Predators and Resources Influence Phosphorus Transfer along an Invertebrate Food Web through Changes in Prey Behaviour

    PubMed Central

    Calizza, Edoardo; Rossi, Loreto; Costantini, Maria Letizia

    2013-01-01

    Predators play a fundamental role in prey trophic behaviour, with indirect consequences for species coexistence and ecosystem functioning. Resource quality and availability also influence prey trophic behaviour, with potential effects on predator-prey dynamics. Although many studies have addressed these topics, little attention has been paid to the combined effects of predators and resources on prey species coexistence and nutrient transfer along food chains, especially in detritus-based systems. To determine the influence of predators and resource quality on the movement and P uptake of detritivores, we carried out a field experiment on the River Kelvin (Scotland) using 32P to test the hypothesis of reduced prey vagility among resource patches as a strategy to avoid predation. Thirty leaf sacks containing alder leaves and two detritivore prey populations (Asellus aquaticus and Lymnaea peregra) were placed in cages, half of them with two predator species (Dendrocoelum lacteum and Erpobdella octoculata) and the other half without predators. Five alder leaf bags, each individually inoculated with a different fungus strain to simulate a patchy habitat, were placed inside each leaf sack. One bag in each sack was labelled with 32P, in order to assess the proportion of detritivores using it as food and thus their movement among the five resource patches. Three replicates for each labelled fungus and each predation treatment (i.e. with and without predators) were left on the riverbed for 7 days. The presence of predators had negligible effects on the number of detritivores in the leaf bags, but it did reduce the proportion of 32P-labelled detritivores and their P uptake. The most strongly affected species was A. aquaticus, whose vagility, trophic overlap with L. peregra and P uptake were all reduced. The results confirm the importance of bottom-up and top-down forces acting simultaneously to regulate nutrient transfer along food chains in patchy habitats. PMID:23750242

  13. Mixotrophs combine resource use to outcompete specialists: implications for aquatic food webs.

    PubMed

    Tittel, Jörg; Bissinger, Vera; Zippel, Barbara; Gaedke, Ursula; Bell, Elanor; Lorke, Andreas; Kamjunke, Norbert

    2003-10-28

    The majority of organisms can be grouped into those relying solely on photosynthesis (phototrophy) or those relying solely on the assimilation of organic substances (heterotrophy) to meet their requirements for energy and carbon. However, a special life history trait exists in which organisms combine both phototrophy and heterotrophy. Such "mixotrophy" is a widespread phenomenon in aquatic habitats and is observed in many protozoan and metazoan organisms. The strategy requires investment in both photosynthetic and heterotrophic cellular apparatus, and the benefits must outweigh these costs. In accordance with mechanistic resource competition theory, laboratory experiments revealed that pigmented mixotrophs combined light, mineral nutrients, and prey as substitutable resources. Thereby, they reduced prey abundance below the critical food concentration of competing specialist grazers [Rothhaupt, K. O. (1996) Ecology 77, 716-724]. Here, we demonstrate the important consequences of this strategy for an aquatic community. In the illuminated surface strata of a lake, mixotrophs reduced prey abundance steeply. The data suggest that, as a consequence, grazers from higher trophic levels, consuming both the mixotrophs and their prey, could not persist. Thus, the mixotrophs escaped from competition with and losses to higher grazers. Furthermore, the mixotrophs structured prey abundance along the vertical light gradient, creating low densities near the surface and a pronounced maximum of their algal prey at depth. Such deep algal accumulations are typical features of nutrient-poor aquatic habitats, previously explained by resource availability. We hypothesize instead that the mixotrophic grazing strategy is responsible for deep algal accumulations in many aquatic environments. PMID:14569026

  14. PlasmoView: a web-based resource to visualise global Plasmodium falciparum genomic variation.

    PubMed

    Preston, Mark D; Assefa, Samuel A; Ocholla, Harold; Sutherland, Colin J; Borrmann, Steffen; Nzila, Alexis; Michon, Pascal; Hien, Tran Tinh; Bousema, Teun; Drakeley, Christopher J; Zongo, Issaka; Ouédraogo, Jean-Bosco; Djimde, Abdoulaye A; Doumbo, Ogobara K; Nosten, Francois; Fairhurst, Rick M; Conway, David J; Roper, Cally; Clark, Taane G

    2014-06-01

    Malaria is a global public health challenge, with drug resistance a major barrier to disease control and elimination. To meet the urgent need for better treatments and vaccines, a deeper knowledge of Plasmodium biology and malaria epidemiology is required. An improved understanding of the genomic variation of malaria parasites, especially the most virulent Plasmodium falciparum (Pf) species, has the potential to yield new insights in these areas. High-throughput sequencing and genotyping is generating large amounts of genomic data across multiple parasite populations. The resulting ability to identify informative variants, particularly single-nucleotide polymorphisms (SNPs), will lead to the discovery of intra- and inter-population differences and thus enable the development of genetic barcodes for diagnostic assays and clinical studies. Knowledge of genetic variability underlying drug resistance and other differential phenotypes will also facilitate the identification of novel mutations and contribute to surveillance and stratified medicine applications. The PlasmoView interactive web-browsing tool enables the research community to visualise genomic variation and annotation (eg, biological function) in a geographic setting. The first release contains over 600,000 high-quality SNPs in 631 Pf isolates from laboratory strains and four malaria-endemic regions (West Africa, East Africa, Southeast Asia and Oceania). PMID:24338354

  15. PlasmoView: A Web-based Resource to Visualise Global Plasmodium falciparum Genomic Variation

    PubMed Central

    Preston, Mark D.; Assefa, Samuel A.; Ocholla, Harold; Sutherland, Colin J.; Borrmann, Steffen; Nzila, Alexis; Michon, Pascal; Hien, Tran Tinh; Bousema, Teun; Drakeley, Christopher J.; Zongo, Issaka; Ouédraogo, Jean-Bosco; Djimde, Abdoulaye A.; Doumbo, Ogobara K.; Nosten, Francois; Fairhurst, Rick M.; Conway, David J.; Roper, Cally; Clark, Taane G.

    2014-01-01

    Malaria is a global public health challenge, with drug resistance a major barrier to disease control and elimination. To meet the urgent need for better treatments and vaccines, a deeper knowledge of Plasmodium biology and malaria epidemiology is required. An improved understanding of the genomic variation of malaria parasites, especially the most virulent Plasmodium falciparum (Pf) species, has the potential to yield new insights in these areas. High-throughput sequencing and genotyping is generating large amounts of genomic data across multiple parasite populations. The resulting ability to identify informative variants, particularly single-nucleotide polymorphisms (SNPs), will lead to the discovery of intra- and inter-population differences and thus enable the development of genetic barcodes for diagnostic assays and clinical studies. Knowledge of genetic variability underlying drug resistance and other differential phenotypes will also facilitate the identification of novel mutations and contribute to surveillance and stratified medicine applications. The PlasmoView interactive web-browsing tool enables the research community to visualise genomic variation and annotation (eg, biological function) in a geographic setting. The first release contains over 600 000 high-quality SNPs in 631 Pf isolates from laboratory strains and four malaria-endemic regions (West Africa, East Africa, Southeast Asia and Oceania). PMID:24338354

  16. BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors

    PubMed Central

    Dong, Xiaobao; Lu, Xiaotian; Zhang, Ziding

    2015-01-01

    Gram-negative pathogenic bacteria inject type III secreted effectors (T3SEs) into host cells to sabotage their immune signaling networks. Because T3SEs constitute a meeting-point of pathogen virulence and host defense, they are of keen interest to host–pathogen interaction research community. To accelerate the identification and functional understanding of T3SEs, we present BEAN 2.0 as an integrated web resource to predict, analyse and store T3SEs. BEAN 2.0 includes three major components. First, it provides an accurate T3SE predictor based on a hybrid approach. Using independent testing data, we show that BEAN 2.0 achieves a sensitivity of 86.05% and a specificity of 100%. Second, it integrates a set of online sequence analysis tools. Users can further perform functional analysis of putative T3SEs in a seamless way, such as subcellular location prediction, functional domain scan and disorder region annotation. Third, it compiles a database covering 1215 experimentally verified T3SEs and constructs two T3SE-related networks that can be used to explore the relationships among T3SEs. Taken together, by presenting a one-stop T3SE bioinformatics resource, we hope BEAN 2.0 can promote comprehensive understanding of the function and evolution of T3SEs. Database URL: http://systbio.cau.edu.cn/bean/ PMID:26120140

  17. BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors.

    PubMed

    Dong, Xiaobao; Lu, Xiaotian; Zhang, Ziding

    2015-01-01

    Gram-negative pathogenic bacteria inject type III secreted effectors (T3SEs) into host cells to sabotage their immune signaling networks. Because T3SEs constitute a meeting-point of pathogen virulence and host defense, they are of keen interest to host-pathogen interaction research community. To accelerate the identification and functional understanding of T3SEs, we present BEAN 2.0 as an integrated web resource to predict, analyse and store T3SEs. BEAN 2.0 includes three major components. First, it provides an accurate T3SE predictor based on a hybrid approach. Using independent testing data, we show that BEAN 2.0 achieves a sensitivity of 86.05% and a specificity of 100%. Second, it integrates a set of online sequence analysis tools. Users can further perform functional analysis of putative T3SEs in a seamless way, such as subcellular location prediction, functional domain scan and disorder region annotation. Third, it compiles a database covering 1215 experimentally verified T3SEs and constructs two T3SE-related networks that can be used to explore the relationships among T3SEs. Taken together, by presenting a one-stop T3SE bioinformatics resource, we hope BEAN 2.0 can promote comprehensive understanding of the function and evolution of T3SEs.

  18. Bicentennial Conference on Bibliographic Control for the New Millennium: Confronting the Challenges of Networked Resources and the Web (Washington, DC, November 15-17, 2000).

    ERIC Educational Resources Information Center

    Library of Congress, Washington, DC. Cataloging Directorate.

    The goals of this conference, sponsored by the Library of Congress Cataloging Directorate, were to develop an overall strategy to address the challenges of improved access to World Wide Web resources through library catalogs and applications of metadata and to identify attainable actions for achieving the objectives of the overall strategy. This…

  19. Changes in College Students' Perceptions of Use of Web-Based Resources for Academic Tasks with Wikipedia Projects: A Preliminary Exploration

    ERIC Educational Resources Information Center

    Traphagan, Tomoko; Traphagan, John; Dickens, Linda Neavel; Resta, Paul

    2014-01-01

    Motivated by the need to facilitate Net Generation students' information literacy (IL), or more specifically, to promote student understanding of legitimate, effective use of Web-based resources, this exploratory study investigated how analyzing, writing, posting, and monitoring Wikipedia entries might help students develop critical…

  20. Polar Remote Sensing: A Web Resource to Promote the Use of Remote Sensing Data in Undergraduate Education and Research

    NASA Astrophysics Data System (ADS)

    Gens, R.; Prakash, A.; McClung, S.

    2006-12-01

    Remote sensing offers a powerful means to study the dynamic Polar Regions that respond to and drive changes elsewhere on Earth. Polar Remote Sensing (www.polar-remotesensing.alaska.edu/ ) is a web resource that includes a brief introduction to the Polar Regions and the International Polar Year (IPY). Through a series of short case studies that are based on the use of remote sensing data, this resource provides glimpses of polar features and processes. The case studies are primarily designed for post-secondary students and faculty who already have basic knowledge of remote sensing data and tools. Each case study is independent and includes pedagogic wrappers, such as assessment techniques, and ideas on how to extend and adapt the case studies to meet faculty and student course / research requirements. Currently two completed case studies are included that serve as a prototype for developing possibly several other case studies. The first case study uses field observations and multi-temporal remote sensing images to monitor the receding terminus of the Mendenhall glacier in southeast Alaska, and is drawn primarily from a class project carried out by UAF graduate student Eleanor Boyce. The second case study uses synthetic aperture radar images to detect and map the seaward edge of landfast sea ice along the coast of Barrow, the northern most point of the US. This case study is based on a part of the doctoral research of UAF graduate student Andy Mahoney. The authors propose to develop a series of such case studies, and possibly develop and test a Spanish version of the resource subject to the availability of funds. remotesensing.alaska.edu/

  1. Managing Water Resources Using WebGIS: Development and Application of an ArcGIS Explorer Toolkit - uWATER

    NASA Astrophysics Data System (ADS)

    Lin, Y. F.; Yang, Y. E.

    2010-12-01

    Integration of GIS with decision support systems (DSS) for environmental resources management has been a popular issue for more than a decade. A GIS-based DSS permits visualization of considerations pertinent to the decision-making process and allows informed participation by the non-technical decision maker. However, the information and knowledge contained in GIS datasets cannot be fairly and efficiently shared unless all interested parties have access to GIS software. This problem has been addressed with the recent release by the Environmental Systems Research Institute, Inc. (ESRI) of a free, lightweight GIS browser, ArcGIS Explorer, a development with significant promise for community participation in planning via a GIS-based DSS. The ubiquitous WebGIS Analysis Toolkit for Extensive Resources (uWATER) is an ArcGIS Explorer plug-in package developed by the Illinois State Water Survey for visualizing and analyzing decision support variables such as groundwater modeling results. The uWATER package was coded in Microsoft Visual Basic 2008 and designed to utilize the computing capacity of a single laptop computer. This presentation will demonstrate an application using uWATER for groundwater resource management including: 1) visualizing heads computed by a numerical model; 2) computation using analytical approaches; 3) identifying hydrologic assets (such as fish habitats, streams, and wetlands) threatened by pumping. uWATER is free and can be downloaded from http://www.sws.uiuc.edu/gws/sware/uwater/. The download package includes the plug-in program, user's guide, and sample files. The Architecture of uWATER in ArcGIS Explorer

  2. The National Toxicology Program Web-based nonneoplastic lesion atlas: a global toxicology and pathology resource.

    PubMed

    Cesta, Mark F; Malarkey, David E; Herbert, Ronald A; Brix, Amy; Hamlin, Melvin H; Singletary, Emily; Sills, Robert C; Bucher, John R; Birnbaum, Linda S

    2014-01-01

    Toxicologists and pathologists worldwide will benefit from a new, website-based, and completely searchable Nonneoplastic Lesion Atlas just released by the U.S. National Toxicology Program (NTP). The atlas is a much-needed resource with thousands of high-quality, zoomable images and diagnostic guidelines for each rodent lesion. Liver, gallbladder, nervous system, bone marrow, lower urinary tract and skin lesion images, and diagnostic strategies are available now. More organ and biological systems will be added with a total of 22 chapters planned for the completed project. The atlas will be used by the NTP and its many pathology partners to standardize lesion diagnosis, terminology, and the way lesions are recorded. The goal is to improve our understanding of nonneoplastic lesions and the consistency and accuracy of their diagnosis between pathologists and laboratories. The atlas is also a useful training tool for pathology residents and can be used to bolster any organization's own lesion databases. Researchers have free access to this online resource at www.ntp.niehs.nih.gov/nonneoplastic.

  3. Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration

    PubMed Central

    2010-01-01

    Background Scientific data integration and computational service discovery are challenges for the bioinformatic community. This process is made more difficult by the separate and independent construction of biological databases, which makes the exchange of data between information resources difficult and labor intensive. A recently described semantic web protocol, the Simple Semantic Web Architecture and Protocol (SSWAP; pronounced "swap") offers the ability to describe data and services in a semantically meaningful way. We report how three major information resources (Gramene, SoyBase and the Legume Information System [LIS]) used SSWAP to semantically describe selected data and web services. Methods We selected high-priority Quantitative Trait Locus (QTL), genomic mapping, trait, phenotypic, and sequence data and associated services such as BLAST for publication, data retrieval, and service invocation via semantic web services. Data and services were mapped to concepts and categories as implemented in legacy and de novo community ontologies. We used SSWAP to express these offerings in OWL Web Ontology Language (OWL), Resource Description Framework (RDF) and eXtensible Markup Language (XML) documents, which are appropriate for their semantic discovery and retrieval. We implemented SSWAP services to respond to web queries and return data. These services are registered with the SSWAP Discovery Server and are available for semantic discovery at http://sswap.info. Results A total of ten services delivering QTL information from Gramene were created. From SoyBase, we created six services delivering information about soybean QTLs, and seven services delivering genetic locus information. For LIS we constructed three services, two of which allow the retrieval of DNA and RNA FASTA sequences with the third service providing nucleic acid sequence comparison capability (BLAST). Conclusions The need for semantic integration technologies has preceded available solutions. We

  4. Teaching English as an Additional Language 5-11: A Whole School Resource File

    ERIC Educational Resources Information Center

    Scott, Caroline

    2011-01-01

    There are increasing numbers of children with little or no English entering English speaking mainstream lessons. This often leaves them with unique frustrations due to limited English language proficiency and disorientation. Teachers often feel unable to cater sufficiently for these new arrivals. "Teaching English as an Additional Language Ages…

  5. The science, technology and research network (STARNET) a searchable thematic compilation of web resources

    USGS Publications Warehouse

    Blados, W.R.; Cotter, G.A.; Hermann, T.

    2007-01-01

    International alliances in space efforts have resulted in a more rapid diffusion of space technology. This, in turn, increases pressure on organizations to push forward with technological developments and to take steps to maximize their inclusion into the research and development (R&D) process and the overall advancement and enhancement of space technology. To cope with this vast and rapidly growing amount of data and information that is vital to the success of the innovation, the Information Management Committee (IMC) of the Research Technology Agency (RTA) developed the science, technology and research network (STARNET). The purpose of this network is to facilitate access to worldwide information elements in terms of science, technology and overall research. It provides a virtual library with special emphasis on international security; a "one stop" information resource for policy makers, program managers, scientists, engineers, researchers and others. ?? 2007 IEEE.

  6. ``If it's not on the Web, it doesn't exist at all'': Electronic Information Resources -- Myth and Reality

    NASA Astrophysics Data System (ADS)

    Stevens-Rayburn, Sarah; Bouton, Ellen N.

    In this paper, we review the current status of astronomical research via electronic means, with an eye towards separating the hype from the hypothetical in hopes of revealing the actual state of affairs. We will review both anecdotal and scholarly work aimed at documenting the state of research using the World Wide Web and demonstrate that although there is enormous potential in electronic research, much of that potential is as yet unrealized. In addition, especially in astronomy, a significant amount of material is not (yet) available electronically and likely will never be. Finally, we will point out the potential danger of a looming paradigm shift in the way astronomers conduct research and the possible consequences thereof. \\end{abstract}

  7. Assessing the quality of infertility resources on the World Wide Web: tools to guide clients through the maze of fact and fiction.

    PubMed

    Okamura, Kyoko; Bernstein, Judith; Fidler, Anne T

    2002-01-01

    The Internet has become a major source of health information for women, but information placed on the World Wide Web does not routinely undergo a peer review process before dissemination. In this study, we present an analysis of 197 infertility-related Web sites for quality and accountability, using JAMA's minimal core standards for responsible print. Only 2% of the web sites analyzed met all four recommended standards, and 50.8% failed to report any of the four. Commercial web sites were more likely to fail to meet minimum standards (71.2%) than those with educational (46.8%) or supportive (29.8%) elements. Web sites with educational and informational components were most common (70.6%), followed by commercial sites (52.8%) and sites that offered a forum for infertility support and activism (28.9%). Internet resources available to infertile patients are at best variable. The current state of infertility-related materials on the World Wide Web offers unprecedented opportunities to improve services to a growing number of e-health users. Because of variations in quality of site content, women's health clinicians must assume responsibility for a new role as information monitor. This study provides assessment tools clinicians can apply and share with clients.

  8. Planetary atmosphere models: A research and instructional web-based resource

    NASA Astrophysics Data System (ADS)

    Gray, Samuel Augustine

    The effects of altitude change on the temperature, pressure, density, and speed of sound were investigated. These effects have been documented in Global Reference Atmospheric Models (GRAMs) to be used in calculating the conditions in various parts of the atmosphere for several planets. Besides GRAMs, there are several websites that provide online calculators for the 1976 US Standard Atmosphere. This thesis presents the creation of an online calculator of the atmospheres of Earth, Mars, Venus, Titan, and Neptune. The websites consist of input forms for altitude and temperature adjustment followed by a results table for the calculated data. The first phase involved creating a spreadsheet reference based on the 1976 US Standard Atmosphere and other planetary GRAMs available. Microsoft Excel was used to input the equations and make a graphical representation of the temperature, pressure, density, and speed of sound change as altitude changed using equations obtained from the GRAMs. These spreadsheets were used later as a reference for the JavaScript code in both the design and comparison of the data output of the calculators. The websites were created using HTML, CSS, and JavaScript coding languages. The calculators could accurately display the temperature, pressure, density, and speed of sound of these planets from surface values to various stages within the atmosphere. These websites provide a resource for students involved in projects and classes that require knowledge of these changes in these atmospheres. This project also created a chance for new project topics to arise for future students involved in aeronautics and astronautics.

  9. The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

    PubMed

    Gopinath, G; Hari, K; Jain, R; Mammel, M K; Kothary, M H; Franco, A A; Grim, C J; Jarvis, K G; Sathyamoorthy, V; Hu, L; Datta, A R; Patel, I R; Jackson, S A; Gangiredla, J; Kotewicz, M L; LeClerc, J E; Wekell, M; McCardell, B A; Solomotis, M D; Tall, B D

    2013-06-01

    Investigation of foodborne diseases requires the capture and analysis of time-sensitive information on microbial pathogens that is derived from multiple analytical methods and sources. The web-based Pathogen-annotated Tracking Resource Network (PATRN) system (www.patrn.net) was developed to address the data aggregation, analysis, and communication needs important to the global food safety community for the investigation of foodborne disease. PATRN incorporates a standard vocabulary for describing isolate metadata and provides a representational schema for a prototypic data exchange standard using a novel data loading wizard for aggregation of assay and attribution information. PATRN currently houses expert-curated, high-quality "foundational datasets" consisting of published experimental results from conventional assays and next generation analysis platforms for isolates of Escherichia coli, Listeria monocytogenes, and Salmonella, Shigella, Vibrio and Cronobacter species. A suite of computational tools for data mining, clustering, and graphical representation is available. Within PATRN, the public curated data repository is complemented by a secure private workspace for user-driven analyses, and for sharing data among collaborators. To demonstrate the data curation, loading wizard features, and analytical capabilities of PATRN, three use-case scenarios are presented. Use-case scenario one is a comparison of the distribution and prevalence of plasmid-encoded virulence factor genes among 249 Cronobacter strains with similar attributes to that of nine Cronobacter isolates from recent cases obtained between March and October, 2010-2011. To highlight PATRN's data management and trend finding tools, analysis of datasets, stored in PATRN as part of an ongoing surveillance project to identify the predominant molecular serogroups among Cronobacter sakazakii isolates observed in the USA is shown. Use-case scenario two demonstrates the secure workspace available for private

  10. The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

    PubMed

    Gopinath, G; Hari, K; Jain, R; Mammel, M K; Kothary, M H; Franco, A A; Grim, C J; Jarvis, K G; Sathyamoorthy, V; Hu, L; Datta, A R; Patel, I R; Jackson, S A; Gangiredla, J; Kotewicz, M L; LeClerc, J E; Wekell, M; McCardell, B A; Solomotis, M D; Tall, B D

    2013-06-01

    Investigation of foodborne diseases requires the capture and analysis of time-sensitive information on microbial pathogens that is derived from multiple analytical methods and sources. The web-based Pathogen-annotated Tracking Resource Network (PATRN) system (www.patrn.net) was developed to address the data aggregation, analysis, and communication needs important to the global food safety community for the investigation of foodborne disease. PATRN incorporates a standard vocabulary for describing isolate metadata and provides a representational schema for a prototypic data exchange standard using a novel data loading wizard for aggregation of assay and attribution information. PATRN currently houses expert-curated, high-quality "foundational datasets" consisting of published experimental results from conventional assays and next generation analysis platforms for isolates of Escherichia coli, Listeria monocytogenes, and Salmonella, Shigella, Vibrio and Cronobacter species. A suite of computational tools for data mining, clustering, and graphical representation is available. Within PATRN, the public curated data repository is complemented by a secure private workspace for user-driven analyses, and for sharing data among collaborators. To demonstrate the data curation, loading wizard features, and analytical capabilities of PATRN, three use-case scenarios are presented. Use-case scenario one is a comparison of the distribution and prevalence of plasmid-encoded virulence factor genes among 249 Cronobacter strains with similar attributes to that of nine Cronobacter isolates from recent cases obtained between March and October, 2010-2011. To highlight PATRN's data management and trend finding tools, analysis of datasets, stored in PATRN as part of an ongoing surveillance project to identify the predominant molecular serogroups among Cronobacter sakazakii isolates observed in the USA is shown. Use-case scenario two demonstrates the secure workspace available for private

  11. Perspectives on the utilization of aquaculture coproduct in Europe and Asia: prospects for value addition and improved resource efficiency.

    PubMed

    Newton, Richard; Telfer, Trevor; Little, Dave

    2014-01-01

    Aquaculture has often been criticized for its environmental impacts, especially efficiencies concerning global fisheries resources for use in aquafeeds among others. However, little attention has been paid to the contribution of coproducts from aquaculture, which can vary between 40% and 70% of the production. These have often been underutilized and could be redirected to maximize the efficient use of resource inputs including reducing the burden on fisheries resources. In this review, we identify strategies to enhance the overall value of the harvested yield including noneffluent processing coproducts for three of the most important global aquaculture species, and discuss the current and prospective utilization of these resources for value addition and environmental impact reduction. The review concludes that in Europe coproducts are often underutilized because of logistical reasons such as the disconnected nature of the value chain, and perceived legislative barriers. However, in Asia, most coproducts are used, often innovatively but not to their full economic potential and sometimes with possible human health and biosecurity risks. These include possible spread of diseased material and low traceability in some circumstances. Full economic and environmental appraisal is long overdue for the current and potential strategies available for coproduct utilization.

  12. Design Guide for Earth System Science Education: A Web-Based Resource for Teaching Earth System Science

    NASA Astrophysics Data System (ADS)

    Wake, C. P.; Ruzek, M.

    2006-12-01

    The Design Guide for Earth System Science Education (ESSE) is a web-based resource for faculty from multiple disciplines who wish to develop Earth System Science courses or programs in their own institutional settings. This guide represents the lessons learned from 15 years of NASA-supported Earth system science education programs at 57 universities and colleges throughout the United States. The ESSE Design Guide provides a comprehensive synthesis of the experience of faculty who have taught ESS courses at universities in the United States beginning in the early 1990s as part of the ESS program funded by NASA. If you consider each of the ESS courses that have been developed and taught as `experiments' both in pedagogy and institutional organization, then the design guide represents an analysis of the experiments and provides a summary of the main results. The design guide covers a range of topics including teaching, learning and evaluation, institutional change, community building, pathways to STEM education, and diversity. Information is also provided via key points, cross-cutting themes, frequently asked questions, and short stories from the field.

  13. Use of StreamStats in the Upper French Broad River Basin, North Carolina: A Pilot Water-Resources Web Application

    USGS Publications Warehouse

    Wagner, Chad R.; Tighe, Kirsten C.; Terziotti, Silvia

    2009-01-01

    StreamStats is a Web-based Geographic Information System (GIS) application that was developed by the U.S. Geological Survey (USGS) in cooperation with Environmental Systems Research Institute, Inc. (ESRI) to provide access to an assortment of analytical tools that are useful for water-resources planning and management. StreamStats allows users to easily obtain streamflow statistics, basin characteristics, and descriptive information for USGS data-collection sites and selected ungaged sites. StreamStats also allows users to identify stream reaches upstream and downstream from user-selected sites and obtain information for locations along streams where activities occur that can affect streamflow conditions. This functionality can be accessed through a map-based interface with the user's Web browser or through individual functions requested remotely through other Web applications.

  14. Empowering European communities to improve natural resource management for human well-being: the OPPLA web portal & communities of practice

    NASA Astrophysics Data System (ADS)

    Metzger, M.; Brown, C.; Pérez-Soba, M.; Rounsevell, M.; Verweij, P.; Delbaere, B.; Cojocaru, G.; Saarikoski, H.; Harrison, P.; Zellmer, K.

    2014-12-01

    The ecosystem services concept is seen by many as a useful paradigm to support decision-making at the complex interface between science, policy and practice. However, to be successful, it requires a strong willingness for collaboration and joint understanding. In support of this aspiration, OPPLA is being developed as a web portal to enable European communities to better manage ecosystems for human well-being and livelihoods. OPPLA will provide access to a variety of online resources such as tools, case studies, lessons learned, videos, manuals and training and educational materials. It will also provide expert forums and spaces for discussions between researchers, practitioners and decision makers. Hence a critical aspect of the success of OPPLA is the co-evolution of communities of practice. An example of a community of practice is the recently launched Ecosystem Services Community - Scotland (ESCom-Scotland; escomscotland.wordpress.com). ESCom-Scotland aims to support better management of Scotland's natural resources by helping to establish a community of practice between individuals and groups involved in the science, policy and practice behind sustainable ecosystem management. It aspires to encourage the sharing of ideas, increase collaboration and to initiate a support network for those engaging with the ecosystem services concept and it will use the OPPLA resources to support these activities. OPPLA is currently at the developmental stage and was instigated by two large European Commission funded research projects: OPERAs (www.operas-project.eu) and OpenNESS (www.openness-project.eu), with a combined budget of ca. €24m. These projects aim to improve understanding of how ecosystem services contribute to human well-being in different social-ecological systems. Research will establish whether, how and under what conditions the ecosystem services concept can move beyond the academic domain towards practical implementation in support of sustainable ecosystem

  15. The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

    PubMed Central

    Laing, Chad R.; Lingohr, Erika J.; Gannon, Victor P. J.; Nash, John H. E.; Taboada, Eduardo N.

    2016-01-01

    For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS) promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution and outbreak analysis. We present the Salmonella In Silico Typing Resource (SISTR), a bioinformatics platform for rapidly performing simultaneous in silico analyses for several leading subtyping methods on draft Salmonella genome assemblies. In addition to performing serovar prediction by genoserotyping, this resource integrates sequence-based typing analyses for: Multi-Locus Sequence Typing (MLST), ribosomal MLST (rMLST), and core genome MLST (cgMLST). We show how phylogenetic context from cgMLST analysis can supplement the genoserotyping analysis and increase the accuracy of in silico serovar prediction to over 94.6% on a dataset comprised of 4,188 finished genomes and WGS draft assemblies. In addition to allowing analysis of user-uploaded whole-genome assemblies, the SISTR platform incorporates a database comprising over 4,000 publicly available genomes, allowing users to place their isolates in a broader phylogenetic and epidemiological context. The resource incorporates several metadata driven visualizations to examine the phylogenetic, geospatial and temporal distribution of genome-sequenced isolates. As sequencing of Salmonella isolates at public health laboratories around the world becomes increasingly common, rapid in silico analysis of minimally processed draft genome assemblies provides a powerful approach for molecular epidemiology in support of public health investigations. Moreover, this type of integrated analysis using multiple sequence-based methods of sub

  16. The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

    PubMed

    Yoshida, Catherine E; Kruczkiewicz, Peter; Laing, Chad R; Lingohr, Erika J; Gannon, Victor P J; Nash, John H E; Taboada, Eduardo N

    2016-01-01

    For nearly 100 years serotyping has been the gold standard for the identification of Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches, serotype information remains a cornerstone in food safety and public health activities aimed at reducing the burden of salmonellosis. At the same time, recent advances in whole-genome sequencing (WGS) promise to revolutionize our ability to perform advanced pathogen characterization in support of improved source attribution and outbreak analysis. We present the Salmonella In Silico Typing Resource (SISTR), a bioinformatics platform for rapidly performing simultaneous in silico analyses for several leading subtyping methods on draft Salmonella genome assemblies. In addition to performing serovar prediction by genoserotyping, this resource integrates sequence-based typing analyses for: Multi-Locus Sequence Typing (MLST), ribosomal MLST (rMLST), and core genome MLST (cgMLST). We show how phylogenetic context from cgMLST analysis can supplement the genoserotyping analysis and increase the accuracy of in silico serovar prediction to over 94.6% on a dataset comprised of 4,188 finished genomes and WGS draft assemblies. In addition to allowing analysis of user-uploaded whole-genome assemblies, the SISTR platform incorporates a database comprising over 4,000 publicly available genomes, allowing users to place their isolates in a broader phylogenetic and epidemiological context. The resource incorporates several metadata driven visualizations to examine the phylogenetic, geospatial and temporal distribution of genome-sequenced isolates. As sequencing of Salmonella isolates at public health laboratories around the world becomes increasingly common, rapid in silico analysis of minimally processed draft genome assemblies provides a powerful approach for molecular epidemiology in support of public health investigations. Moreover, this type of integrated analysis using multiple sequence-based methods of sub

  17. Web-based therapeutic exercise resource center as a treatment for knee osteoarthritis: a prospective cohort pilot study

    PubMed Central

    2014-01-01

    Background Although beneficial effects of exercise in the management of knee osteoarthritis (OA) have been established, only 14 -18% of patients with knee OA receive an exercise from their primary care provider. Patients with knee OA cite lack of physician exercise advice as a major reason why they do not exercise to improve their condition. The purpose of this pilot study was to investigate use of a web-based Therapeutic Exercise Resource Center (TERC) as a tool to prescribe strength, flexibility and aerobic exercise as part of knee OA treatment. It was hypothesized that significant change in clinical outcome scores would result from patients’ use of the TERC. Methods Sixty five individuals diagnosed with mild/moderate knee OA based on symptoms and radiographs were enrolled through outpatient physician clinics. Using exercise animations to facilitate proper technique, the TERC assigned and progressed patients through multiple levels of exercise intensity based on exercise history, co-morbidities and a validated measure of pain and function. Subjects completed a modified short form WOMAC (mSF-WOMAC), World Health Organization Quality of Life (WHO-QOL) and Knee Self-Efficacy Scale (K-SES) at baseline and completion of the 8 week program, and a user satisfaction survey. Outcomes were compared over time using paired t-tests and effect sizes calculated using partial point biserial (pr). Results Fifty two participants completed the 8 week program with average duration of knee pain 8.0 ± 11.0 yrs (25 females; 61.0 ± 9.4 yrs; body mass index, 28.8 ± 6.3 kg/m2). During the study period, all outcome measures improved: mSF-WOMAC scores decreased (better pain and function) (p < .001; large effect, pr = 0.70); WHO-QOL physical scores increased (p = .015; medium effect, pr = 0.33); and K-SES scores increased (p < .001; large effect, pr = 0.54). No significant differences were found in study outcomes as a function of gender, age, BMI

  18. Simulating the response to phosphate additions in the oligotrophic eastern Mediterranean using an idealized four-member microbial food web model

    NASA Astrophysics Data System (ADS)

    Thingstad, T.

    2005-11-01

    Elsewhere in this volume, observations of the natural microbial food web in the Cyprus Gyre, eastern Mediterranean, and its transient responses both to phosphate additions in situ and to phosphate and ammonium additions when enclosed in microcosm bottles, are reported. We here explore an idealized four-population model of the microbial part of the food web, containing features suggested in these reports to be essential for the observed responses. Such features include a steady state with P-limited growth heterotrophic bacteria and P-limited or N/P co-limited growth of phytoplankton a mechanism for luxury consumption and nutrient storage in the osmotrophs (phytoplankton and bacteria), a supply of labile organic carbon substrates in excess of bacterial carbon demand, a relatively small excess of bio-available nitrogen, and an assumption that heterotrophic bacteria are superior to phytoplankton in competing for dissolved organic nitrogen. From a P-limited steady-state dominated by heterotrophic organisms, the model responds to the in situ phosphate addition of the Lagrangian experiment with a decrease in chlorophyll, an increase in bacterial production and in bacterial biomass, and a decrease in uptake potential for phosphate. These modeled responses at the osmotroph level are qualitatively and quantitatively comparable to those observed, while detailed comparison of model and observations at the predator level appears more difficult. The model is also able to explain main traits of the dynamic patterns observed in microcosm experiments, both when different concentrations of phosphate were added to previously unperturbed water, and when water collected inside the patch of the Lagrangian experiment was enclosed and supplied with ammonia. We conclude that the idealized model contains sufficient elements to capture a useful first-order approximation to a presumably quite complex microbial food web. In this model, predator growth responds not only to food quantity, but

  19. Web Conferencing and ICTs to Enhance Undergraduate Science Teaching

    ERIC Educational Resources Information Center

    Seufferheld, Manfredo J.; Scagnoli, Norma I.

    2011-01-01

    The last decade has seen a great variety in the ways in which instructors have incorporated the World Wide Web into their traditional classroom courses; however, this combination has not always translated into changes or improvements in teaching and learning. The real challenge has proved to be not the addition of web resources to the traditional…

  20. Will the Web break?

    PubMed

    Zittrain, Jonathan

    2013-03-28

    What is the Web? What makes it work? And is it dying? This paper is drawn from a talk delivered by Prof. Zittrain to the Royal Society Discussion Meeting 'Web science: a new frontier' in September 2010. It covers key questions about the way the Web works, and how an understanding of its past can help those theorizing about the future. The original Web allowed users to display and send information from their individual computers, and organized the resources of the Internet with uniform resource locators. In the 20 years since then, the Web has evolved. These new challenges require a return to the spirit of the early Web, exploiting the power of the Web's users and its distributed nature to overcome the commercial and geopolitical forces at play. The future of the Web rests in projects that preserve its spirit, and in the Web science that helps make them possible.

  1. Stream food web response to a salmon carcass analogue addition in two central Idaho, U.S.A. streams

    PubMed Central

    KOHLER, ANDRE E; RUGENSKI, AMANDA; TAKI, DOUG

    2008-01-01

    Pacific salmon and steelhead once contributed large amounts of marine-derived carbon, nitrogen and phosphorus to freshwater ecosystems in the Pacific Northwest of the United States of America (California, Oregon, Washington and Idaho). Declines in historically abundant anadromous salmonid populations represent a significant loss of returning nutrients across a large spatial scale. Recently, a manufactured salmon carcass analogue was developed and tested as a safe and effective method of delivering nutrients to freshwater and linked riparian ecosystems where marine-derived nutrients have been reduced or eliminated. We compared four streams: two reference and two treatment streams using salmon carcass analogue(s) (SCA) as a treatment. Response variables measured included: surface streamwater chemistry; nutrient limitation status; carbon and nitrogen stable isotopes; periphyton chlorophyll a and ash-free dry mass (AFDM); macroinvertebrate density and biomass; and leaf litter decomposition rates. Within each stream, upstream reference and downstream treatment reaches were sampled 1 year before, during, and 1 year after the addition of SCA. Periphyton chlorophyll a and AFDM and macroinvertebrate biomass were significantly higher in stream reaches treated with SCA. Enriched stable isotope (δ15N) signatures were observed in periphyton and macroinvertebrate samples collected from treatment reaches in both treatment streams, indicating trophic transfer from SCA to consumers. Densities of Ephemerellidae, Elmidae and Brachycentridae were significantly higher in treatment reaches. Macroinvertebrate community composition and structure, as measured by taxonomic richness and diversity, did not appear to respond significantly to SCA treatment. Leaf breakdown rates were variable among treatment streams: significantly higher in one stream treatment reach but not the other. Salmon carcass analogue treatments had no detectable effect on measured water chemistry variables. Our results

  2. A New Way of Making Cultural Information Resources Visible on the Web: Museums and the Open Archive Initiative.

    ERIC Educational Resources Information Center

    Perkins, John

    Museums hold enormous amounts of information in collections management systems and publish academic and scholarly research in print journals, exhibition catalogs, virtual museum presentations, and community publications. Much of this rich content is unavailable to web search engines or otherwise gets lost in the vastness of the World Wide Web. The…

  3. Webbing It.

    ERIC Educational Resources Information Center

    Brandsberg, Jennifer

    1996-01-01

    Provides a quick look at some World Wide Web sites that contain current election year information. Recommends Project Vote Smart, a site with links to online news organizations, the home pages of all presidential candidates, and other political sites. Briefly notes several interactive CD-ROM resources. (MJP)

  4. Effect of 15 N Labeled Riparian Fertilization And Salmon Carcass Analog Addition On Food Web Dynamics And Productivity In Four Idaho Streams

    NASA Astrophysics Data System (ADS)

    Rugenski, A. T.; Kohler, A.; Minshall, G. W.; Danehy, R. J.; Taki, D.

    2005-05-01

    Nutrient budgets of stream/riparian ecosystems in the Intermountain West have been depleted through declining salmon populations and certain anthropogenic disturbances (e.g. forestry practices). We measured stream food web responses to a riparian fertilization and an in-stream carcass analog addition in 4 Idaho streams with a 15 N tracer. Aerial application of fertilizer pellets to light (224 kg/ha) and heavy (448 kg/ha) treatment sections of 2 streams and carcass analog additions to 2 others were completed in autumn. Periphyton response was measured through chlorophyll a, nutrient diffusing substrata, and stable isotope analyses. Macroinvertebrates were analyzed for abundance, biomass, community structure, and stable isotope composition. Also, willow (Salix) breakdown rates were determined. Pre-treatment chlorophyll a values showed no significant difference between treatment and reference reaches. Post-treatment results showed significantly higher chlorophyll a and δ 15 N values in treatment reaches compared to reference reaches. Macroinvertebrate abundance, richness, biomass, and δ 15 N values also increased in treated reaches. No significant differences were detected in leaf breakdown rates between reaches. Riparian fertilization effects were longer lasting than the in-stream treatment. These results suggest that nutrient addition to streams and riparian areas can be used as a management tool to increase stream productivity where nutrients are limiting.

  5. Where are the parasites in food webs?

    PubMed Central

    2012-01-01

    This review explores some of the reasons why food webs seem to contain relatively few parasite species when compared to the full diversity of free living species in the system. At present, there are few coherent food web theories to guide scientific studies on parasites, and this review posits that the methods, directions and questions in the field of food web ecology are not always congruent with parasitological inquiry. For example, topological analysis (the primary tool in food web studies) focuses on only one of six important steps in trematode life cycles, each of which requires a stable community dynamic to evolve. In addition, these transmission strategies may also utilize pathways within the food web that are not considered in traditional food web investigations. It is asserted that more effort must be focused on parasite-centric models, and a central theme is that many different approaches will be required. One promising approach is the old energetic perspective, which considers energy as the critical resource for all organisms, and the currency of all food web interactions. From the parasitological point of view, energy can be used to characterize the roles of parasites at all levels in the food web, from individuals to populations to community. The literature on parasite energetics in food webs is very sparse, but the evidence suggests that parasite species richness is low in food webs because parasites are limited by the quantity of energy available to their unique lifestyles. PMID:23092160

  6. Where are the parasites in food webs?

    PubMed

    Sukhdeo, Michael V K

    2012-01-01

    This review explores some of the reasons why food webs seem to contain relatively few parasite species when compared to the full diversity of free living species in the system. At present, there are few coherent food web theories to guide scientific studies on parasites, and this review posits that the methods, directions and questions in the field of food web ecology are not always congruent with parasitological inquiry. For example, topological analysis (the primary tool in food web studies) focuses on only one of six important steps in trematode life cycles, each of which requires a stable community dynamic to evolve. In addition, these transmission strategies may also utilize pathways within the food web that are not considered in traditional food web investigations. It is asserted that more effort must be focused on parasite-centric models, and a central theme is that many different approaches will be required. One promising approach is the old energetic perspective, which considers energy as the critical resource for all organisms, and the currency of all food web interactions. From the parasitological point of view, energy can be used to characterize the roles of parasites at all levels in the food web, from individuals to populations to community. The literature on parasite energetics in food webs is very sparse, but the evidence suggests that parasite species richness is low in food webs because parasites are limited by the quantity of energy available to their unique lifestyles.

  7. The Use of Quality Benchmarking in Assessing Web Resources for the Dermatology Virtual Branch Library of the National electronic Library for Health (NeLH)

    PubMed Central

    Roudsari, AV; Gordon, C; Gray, JA Muir

    2001-01-01

    Background In 1998, the U.K. National Health Service Information for Health Strategy proposed the implementation of a National electronic Library for Health to provide clinicians, healthcare managers and planners, patients and the public with easy, round the clock access to high quality, up-to-date electronic information on health and healthcare. The Virtual Branch Libraries are among the most important components of the National electronic Library for Health . They aim at creating online knowledge based communities, each concerned with some specific clinical and other health-related topics. Objectives This study is about the envisaged Dermatology Virtual Branch Libraries of the National electronic Library for Health . It aims at selecting suitable dermatology Web resources for inclusion in the forthcoming Virtual Branch Libraries after establishing preliminary quality benchmarking rules for this task. Psoriasis, being a common dermatological condition, has been chosen as a starting point. Methods Because quality is a principal concern of the National electronic Library for Health, the study includes a review of the major quality benchmarking systems available today for assessing health-related Web sites. The methodology of developing a quality benchmarking system has been also reviewed. Aided by metasearch Web tools, candidate resources were hand-selected in light of the reviewed benchmarking systems and specific criteria set by the authors. Results Over 90 professional and patient-oriented Web resources on psoriasis and dermatology in general are suggested for inclusion in the forthcoming Dermatology Virtual Branch Libraries. The idea of an all-in knowledge-hallmarking instrument for the National electronic Library for Health is also proposed based on the reviewed quality benchmarking systems. Conclusions Skilled, methodical, organized human reviewing, selection and filtering based on well-defined quality appraisal criteria seems likely to be the key ingredient

  8. Going, going, still there: using the WebCite service to permanently archive cited web pages.

    PubMed

    Eysenbach, Gunther; Trudel, Mathieu

    2005-12-30

    Scholars are increasingly citing electronic "web references" which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To "webcite" a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its "instructions for authors" accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) "prospectively" before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted "citing articles" (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research

  9. Learning from WebQuests

    ERIC Educational Resources Information Center

    Gaskill, Martonia; McNulty, Anastasia; Brooks, David W.

    2006-01-01

    WebQuests are activities in which students use Web resources to learn about school topics. WebQuests are advocated as constructivist activities and ones generally well regarded by students. Two experiments were conducted in school settings to compare learning using WebQuests versus conventional instruction. Students and teachers both enjoyed…

  10. Accessibility and Use of Web-Based Electronic Resources by Physicians in a Psychiatric Institution in Nigeria

    ERIC Educational Resources Information Center

    Oduwole, Adebambo Adewale; Oyewumi, Olatundun

    2010-01-01

    Purpose: This study aims to examine the accessibility and use of web-based electronic databases on the Health InterNetwork Access to Research Initiative (HINARI) portal by physicians in the Neuropsychiatric Hospital, Aro--a psychiatry health institution in Nigeria. Design/methodology/approach: Collection of data was through the use of a three-part…

  11. Are Business-Oriented Social Networking Web Sites Useful Resources for Locating Passive Jobseekers? Results of a Recent Study

    ERIC Educational Resources Information Center

    DeKay, Sam

    2009-01-01

    The assumption that members of business-oriented social networking Web sites are passive jobseekers has never been validated. The purpose of this study is to examine the accuracy of this assumption. The study concludes that this claim is questionable and that the majority of members registered at one major site, and possibly others, are currently…

  12. Creating Project CREATE: Lessons Learned and Best Practices for Developing Web-Based Resources for Public Health Practitioners

    ERIC Educational Resources Information Center

    McGladrey, Margaret; Noar, Seth; Crosby, Richard; Young, April; Webb, Elizabeth

    2012-01-01

    Background: This paper discusses the Rural Center for AIDS/STD Prevention's effort to develop a web-based service called Project CREATE that responds to a need for targeted health promotion materials expressed by directors of HIV/STD prevention services in predominately rural states. Purpose: Project CREATE allows users to select customized…

  13. Web 2.0 as Catalyst: Virtually Reaching Out to Users and Connecting Them to Library Resources and Services

    ERIC Educational Resources Information Center

    Xiao, Norah

    2008-01-01

    This article is based on services to library users in the area of chemistry at the Science and Engineering (S&E) Library of the University of Southern California (USC), to which I applied various new technologies as outreach approaches. Various Web 2.0 technologies such as a blog, tags, YouTube, RSS feeds, Instant Messaging, online presentation…

  14. Electronic Resource Management 2.0: Using Web 2.0 Technologies as Cost-Effective Alternatives to an Electronic Resource Management System

    ERIC Educational Resources Information Center

    Murray, Adam

    2008-01-01

    Designed to assist with the management of e-resources, electronic resource management (ERM) systems are time- and fund-consuming to purchase and maintain. Questions of system compatibility, data population, and workflow design/redesign can be difficult to answer; sometimes those answers are not what we'd prefer to hear. The two primary functions…

  15. Web-based survey of resources for treatment and long-term follow-up for children with brain tumors in developing countries

    PubMed Central

    QADDOUMI, Ibrahim; UNAL, Ekrem; DIEZ, Blanca; KEBUDI, Rejin; QUINTANA, Yuri; BOUFFET, Eric; CHANTADA, Guillermo

    2012-01-01

    Introduction Information about pediatric survivors of brain tumors in developing countries is scant. Purpose In this study we aimed to investigate the availability of resources for treatment and long-term follow up of children with central nervous system tumors in developing countries Material methods A web-based questionnaire on available services and follow-up of brain tumor survivors was posted at www.cure4kids.org and registered users were invited to participate. Results A total of 140 evaluable responses from developing countries (n=103) and high-income countries (n=37) were obtained. There was a significant correlation between gross national income and the availability of services for treatment and follow-up and between patient load and the availability of some services. Conclusion The resources for treatment and long-term follow-up of children with brain tumors need to be improved in developing countries. PMID:21584746

  16. Shoestring Budgets, Band-Aids, and Team Work: Challenges and Motivators in the Development of a Web-Based Resource for Undergraduate Clinical Skills Teaching

    PubMed Central

    Simmons, Collan; Nyhof-Young, Joyce

    2005-01-01

    Background Learning how to conduct a medical interview and perform a physical examination is fundamental to the practice of medicine; however, when this project began, the methods used to teach these skills to medical students at the University of Toronto (U of T) had not changed significantly since the early 1990s despite increasing outpatient care, shorter hospital stays, and heavy preceptor workloads. In response, a Web-based clinical skills resource was developed for the first-year undergraduate medical course—The Art and Science of Clinical Medicine I (ASCM I). Objectives This paper examines our experiences with the development of the ASCM I website and details the challenges and motivators inherent in the production of a Web-based, multimedia medical education tool at a large Canadian medical school. Methods Interviews and a focus group were conducted with the development team to discover the factors that positively and negatively affected the development process. Results Motivating factors included team attributes such as strong leadership and judicious use of medical students and faculty volunteers as developers. Other motivators included a growing lack of instructional equivalency across diverse clinical teaching sites and financial and resource support by the Faculty of Medicine. Barriers to development included an administrative environment that did not yet fully incorporate information technology into its teaching vision and framework, a lack of academic incentive for faculty participation, and inadequate technical support, space, and equipment. Conclusions The success of electronic educational resources such as the ASCM I website has caused a significant cultural shift within the Faculty of Medicine, resulting in the provision of more space, resources, and support for IT endeavours in the undergraduate medical curriculum. PMID:15914461

  17. Web2Quests: Updating a Popular Web-Based Inquiry-Oriented Activity

    ERIC Educational Resources Information Center

    Kurt, Serhat

    2009-01-01

    WebQuest is a popular inquiry-oriented activity in which learners use Web resources. Since the creation of the innovation, almost 15 years ago, the Web has changed significantly, while the WebQuest technique has changed little. This article examines possible applications of new Web trends on WebQuest instructional strategy. Some possible…

  18. Course Development on the World Wide Web.

    ERIC Educational Resources Information Center

    King, Kathleen P.

    1998-01-01

    Guidelines for developing Web-based course materials include considerations of available resources, how technology aids in meeting curricular goals and objectives, Web-site design and construction, and Web-course evaluation. (SK)

  19. Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection

    PubMed Central

    2012-01-01

    Background Next generation sequencing provides clinical research scientists with direct read out of innumerable variants, including personal, pathological and common benign variants. The aim of resequencing studies is to determine the candidate pathogenic variants from individual genomes, or from family-based or tumor/normal genome comparisons. Whilst the use of appropriate controls within the experimental design will minimize the number of false positive variations selected, this number can be reduced further with the use of high quality whole genome reference data to minimize false positives variants prior to candidate gene selection. In addition the use of platform related sequencing error models can help in the recovery of ambiguous genotypes from lower coverage data. Description We have developed a whole genome database of human genetic variations, Huvariome, determined by whole genome deep sequencing data with high coverage and low error rates. The database was designed to be sequencing technology independent but is currently populated with 165 individual whole genomes consisting of small pedigrees and matched tumor/normal samples sequenced with the Complete Genomics sequencing platform. Common variants have been determined for a Benelux population cohort and represented as genotypes alongside the results of two sets of control data (73 of the 165 genomes), Huvariome Core which comprises 31 healthy individuals from the Benelux region, and Diversity Panel consisting of 46 healthy individuals representing 10 different populations and 21 samples in three Pedigrees. Users can query the database by gene or position via a web interface and the results are displayed as the frequency of the variations as detected in the datasets. We demonstrate that Huvariome can provide accurate reference allele frequencies to disambiguate sequencing inconsistencies produced in resequencing experiments. Huvariome has been used to support the selection of candidate cardiomyopathy

  20. PainNetworks: a web-based resource for the visualisation of pain-related genes in the context of their network associations.

    PubMed

    Perkins, James R; Lees, Jonathan; Antunes-Martins, Ana; Diboun, Ilhem; McMahon, Stephen B; Bennett, David L H; Orengo, Christine

    2013-12-01

    Hundreds of genes are proposed to contribute to nociception and pain perception. Historically, most studies of pain-related genes have examined them in isolation or alongside a handful of other genes. More recently the use of systems biology techniques has enabled us to study genes in the context of the biological pathways and networks in which they operate. Here we describe a Web-based resource, available at http://www.PainNetworks.org. It integrates interaction data from various public databases with information on known pain genes taken from several sources (eg, The Pain Genes Database) and allows the user to examine a gene (or set of genes) of interest alongside known interaction partners. This information is displayed by the resource in the form of a network. The user can enrich these networks by using data from pain-focused gene expression studies to highlight genes that change expression in a given experiment or pairs of genes showing correlated expression patterns across different experiments. Genes in the networks are annotated in several ways including biological function and drug binding. The Web site can be used to find out more about a gene of interest by looking at the function of its interaction partners. It can also be used to interpret the results of a functional genomics experiment by revealing putative novel pain-related genes that have similar expression patterns to known pain-related genes and by ranking genes according to their network connections with known pain genes. We expect this resource to grow over time and become a valuable asset to the pain community.

  1. search GenBank: interactive orchestration and ad-hoc choreography of Web services in the exploration of the biomedical resources of the National Center For Biotechnology Information

    PubMed Central

    2013-01-01

    Background Due to the growing number of biomedical entries in data repositories of the National Center for Biotechnology Information (NCBI), it is difficult to collect, manage and process all of these entries in one place by third-party software developers without significant investment in hardware and software infrastructure, its maintenance and administration. Web services allow development of software applications that integrate in one place the functionality and processing logic of distributed software components, without integrating the components themselves and without integrating the resources to which they have access. This is achieved by appropriate orchestration or choreography of available Web services and their shared functions. After the successful application of Web services in the business sector, this technology can now be used to build composite software tools that are oriented towards biomedical data processing. Results We have developed a new tool for efficient and dynamic data exploration in GenBank and other NCBI databases. A dedicated search GenBank system makes use of NCBI Web services and a package of Entrez Programming Utilities (eUtils) in order to provide extended searching capabilities in NCBI data repositories. In search GenBank users can use one of the three exploration paths: simple data searching based on the specified user’s query, advanced data searching based on the specified user’s query, and advanced data exploration with the use of macros. search GenBank orchestrates calls of particular tools available through the NCBI Web service providing requested functionality, while users interactively browse selected records in search GenBank and traverse between NCBI databases using available links. On the other hand, by building macros in the advanced data exploration mode, users create choreographies of eUtils calls, which can lead to the automatic discovery of related data in the specified databases. Conclusions search Gen

  2. The InterPro BioMart: federated query and web service access to the InterPro Resource.

    PubMed

    Jones, Philip; Binns, David; McMenamin, Conor; McAnulla, Craig; Hunter, Sarah

    2011-01-01

    The InterPro BioMart provides users with query-optimized access to predictions of family classification, protein domains and functional sites, based on a broad spectrum of integrated computational models ('signatures') that are generated by the InterPro member databases: Gene3D, HAMAP, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SUPERFAMILY and TIGRFAMs. These predictions are provided for all protein sequences from both the UniProt Knowledge Base and the UniParc protein sequence archive. The InterPro BioMart is supplementary to the primary InterPro web interface (http://www.ebi.ac.uk/interpro), providing a web service and the ability to build complex, custom queries that can efficiently return thousands of rows of data in a variety of formats. This article describes the information available from the InterPro BioMart and illustrates its utility with examples of how to build queries that return useful biological information. Database URL: http://www.ebi.ac.uk/interpro/biomart/martview.

  3. Publicity through Better Web Site Design.

    ERIC Educational Resources Information Center

    Guenther, Kim

    1999-01-01

    Describes how to design Web sites that will reach the most people possible. Discusses publicity; Web search engine sites; adopting Web development standards; using metatags to effectively index a site; Web site addresses and naming conventions; writing for the Web; mass submissions; subject area knowledge; making Web rings; and additional ideas to…

  4. Meaningful Learning from Practice: Web-Based Video in Professional Preparation Programmes in University

    ERIC Educational Resources Information Center

    Admiraal, Wilfried

    2014-01-01

    Web-based video is one of the technologies which can support meaningful learning from practice--in addition to practical benefits such as accessibility of practices, flexibility in updating information, and incorporating video into multimedia resources. A multiple case study was set up on the use of a web-based video learning environment in two…

  5. Selection of population controls for a Salmonella case-control study in the UK using a market research panel and web-survey provides time and resource savings.

    PubMed

    Mook, P; Kanagarajah, S; Maguire, H; Adak, G K; Dabrera, G; Waldram, A; Freeman, R; Charlett, A; Oliver, I

    2016-04-01

    Timely recruitment of population controls in infectious disease outbreak investigations is challenging. We evaluated the timeliness and cost of using a market research panel as a sampling frame for recruiting controls in a case-control study during an outbreak of Salmonella Mikawasima in the UK in 2013. We deployed a web-survey by email to targeted members of a market research panel (panel controls) in parallel to the outbreak control team interviewing randomly selected public health staff by telephone and completing paper-based questionnaires (staff controls). Recruitment and completion of exposure history web-surveys for panel controls (n = 123) took 14 h compared to 15 days for staff controls (n = 82). The average staff-time cost per questionnaire for staff controls was £13·13 compared to an invoiced cost of £3·60 per panel control. Differences in the distribution of some exposures existed between these control groups but case-control studies using each group found that illness was associated with consumption of chicken outside of the home and chicken from local butchers. Recruiting market research panel controls offers time and resource savings. More rapid investigations would enable more prompt implementation of control measures. We recommend that this method of recruiting controls is considered in future investigations and assessed further to better understand strengths and limitations.

  6. Utility of a dermatology interest group blog: the impact of medical student interest groups and Web 2.0 tools as educational resources

    PubMed Central

    Jalalat, Sheila Z; Wagner, Richard F

    2014-01-01

    The open access University of Texas Dermatology Interest Group blog was established in 2004 for the purposes of increasing communication and collaboration between medical students and dermatology faculty, residents, and alumni, as well as to promote educational opportunities and the missions for which the interest group was created. This blog is unique because of its longevity and continuous postings directed toward the educational and professional needs of medical students and residents. A blog user survey was performed to assess viewers’ thoughts, purpose of viewing, demographic profile, subscriber status, usage of the blog and other Web 2.0 tools (forums, Facebook, blogs, Twitter, podcasts), and perceived usefulness. Sixty-one anonymous online surveys were completed during a 1-month period. Statistical analyses of the responses demonstrated that the utilization of web-based tools and the blog were valuable resources for students, especially for blog subscribers, those more involved in an interest group, and those reading the blog for a longer period of time. The usefulness and impact of this method of communication and dissemination of information in medical education may encourage other student groups, faculty advisors, and educators to implement similar educational tools at their institutions. PMID:25298742

  7. Selection of population controls for a Salmonella case-control study in the UK using a market research panel and web-survey provides time and resource savings.

    PubMed

    Mook, P; Kanagarajah, S; Maguire, H; Adak, G K; Dabrera, G; Waldram, A; Freeman, R; Charlett, A; Oliver, I

    2016-04-01

    Timely recruitment of population controls in infectious disease outbreak investigations is challenging. We evaluated the timeliness and cost of using a market research panel as a sampling frame for recruiting controls in a case-control study during an outbreak of Salmonella Mikawasima in the UK in 2013. We deployed a web-survey by email to targeted members of a market research panel (panel controls) in parallel to the outbreak control team interviewing randomly selected public health staff by telephone and completing paper-based questionnaires (staff controls). Recruitment and completion of exposure history web-surveys for panel controls (n = 123) took 14 h compared to 15 days for staff controls (n = 82). The average staff-time cost per questionnaire for staff controls was £13·13 compared to an invoiced cost of £3·60 per panel control. Differences in the distribution of some exposures existed between these control groups but case-control studies using each group found that illness was associated with consumption of chicken outside of the home and chicken from local butchers. Recruiting market research panel controls offers time and resource savings. More rapid investigations would enable more prompt implementation of control measures. We recommend that this method of recruiting controls is considered in future investigations and assessed further to better understand strengths and limitations. PMID:26493476

  8. Utility of a dermatology interest group blog: the impact of medical student interest groups and Web 2.0 tools as educational resources.

    PubMed

    Jalalat, Sheila Z; Wagner, Richard F

    2014-01-01

    The open access University of Texas Dermatology Interest Group blog was established in 2004 for the purposes of increasing communication and collaboration between medical students and dermatology faculty, residents, and alumni, as well as to promote educational opportunities and the missions for which the interest group was created. This blog is unique because of its longevity and continuous postings directed toward the educational and professional needs of medical students and residents. A blog user survey was performed to assess viewers' thoughts, purpose of viewing, demographic profile, subscriber status, usage of the blog and other Web 2.0 tools (forums, Facebook, blogs, Twitter, podcasts), and perceived usefulness. Sixty-one anonymous online surveys were completed during a 1-month period. Statistical analyses of the responses demonstrated that the utilization of web-based tools and the blog were valuable resources for students, especially for blog subscribers, those more involved in an interest group, and those reading the blog for a longer period of time. The usefulness and impact of this method of communication and dissemination of information in medical education may encourage other student groups, faculty advisors, and educators to implement similar educational tools at their institutions.

  9. Utility of a dermatology interest group blog: the impact of medical student interest groups and Web 2.0 tools as educational resources.

    PubMed

    Jalalat, Sheila Z; Wagner, Richard F

    2014-01-01

    The open access University of Texas Dermatology Interest Group blog was established in 2004 for the purposes of increasing communication and collaboration between medical students and dermatology faculty, residents, and alumni, as well as to promote educational opportunities and the missions for which the interest group was created. This blog is unique because of its longevity and continuous postings directed toward the educational and professional needs of medical students and residents. A blog user survey was performed to assess viewers' thoughts, purpose of viewing, demographic profile, subscriber status, usage of the blog and other Web 2.0 tools (forums, Facebook, blogs, Twitter, podcasts), and perceived usefulness. Sixty-one anonymous online surveys were completed during a 1-month period. Statistical analyses of the responses demonstrated that the utilization of web-based tools and the blog were valuable resources for students, especially for blog subscribers, those more involved in an interest group, and those reading the blog for a longer period of time. The usefulness and impact of this method of communication and dissemination of information in medical education may encourage other student groups, faculty advisors, and educators to implement similar educational tools at their institutions. PMID:25298742

  10. Using a resource effect study pre-pilot to inform a large randomized trial: the Decide2Quit.Org Web-assisted tobacco intervention.

    PubMed

    Sadasivam, Rajani S; Allison, Jeroan J; Ray, Midge N; Ford, Daniel E; Houston, Thomas K

    2012-01-01

    Resource effect studies can be useful in highlighting areas of improvement in informatics tools. Before a large randomized trial, we tested the functions of the Decide2Quit.org Web-assisted tobacco intervention using smokers (N=204) recruited via Google advertisements. These smokers were given access to Decide2Quit.org for six months and we tracked their usage and assessed their six months cessation using a rigorous follow-up. Multiple, interesting findings were identified: we found the use of tailored emails to dramatically increase participation for a short period. We also found varied effects of the different functions. Functions supporting "seeking social support" (Your Online Community and Family Tools), Healthcare Provider Tools, and the Library had positive effects on quit outcomes. One surprising finding, which needs further investigation, was that writing to our Tobacco Treatment Specialists was negatively associated with quit outcomes.

  11. Genetic counselors and health literacy: the role of genetic counselors in developing a web-based resource about the Affordable Care Act.

    PubMed

    Mann, Sylvia; Mui, Pauline; Boomsma, Jennifer; Hasegawa, Lianne

    2015-06-01

    The Western States Genetic Services Collaborative (WSGSC) recognized the need for clear and understandable information about the Affordable Care Act (ACA) for families throughout the life course. The genetic counselors working in the WSGSC developed, tested, and implemented a web resource ( http://www.westernstatesgenetics.org/ACA_home.htm ) to help families navigate information about the ACA tailored to their life situation. The training and experience of genetic counselors provide the skills needed to translate complicated information, like that of the ACA, into formats that the general public can comprehend. The website went public in October 2013, and it has been positively received. The development of this website is a good case study in how genetic counseling skills can be applied to public health education and improving health literacy. PMID:25502406

  12. Web Team Development

    ERIC Educational Resources Information Center

    Church, Jennifer; Felker, Kyle

    2005-01-01

    The dynamic world of the Web has provided libraries with a wealth of opportunities, including new approaches to the provision of information and varied internal staffing structures. The development of self-managed Web teams, endowed with authority and resources, can create an adaptable and responsive culture within libraries. This new working team…

  13. Wetlands and Web Pages.

    ERIC Educational Resources Information Center

    Tisone-Bartels, Dede

    1998-01-01

    Argues that the preservation of areas like the Shoreline Park (California) wetlands depends on educating students about the value of natural resources. Describes the creation of a Web page on the wetlands for third-grade students by seventh-grade art and ecology students. Outlines the technical process of developing a Web page. (DSK)

  14. Taming the Tangled Web.

    ERIC Educational Resources Information Center

    Sturgeon, Julie

    2001-01-01

    Describes the Open Knowledge Initiative (OKI) and its use as a resource for higher education institutions interested in developing web-based learning capabilities. Highlights the OKI collaborative effort and its goal to ensure that the web tools it designs are installable and supportable on smaller campuses and by smaller institutions. (GR)

  15. Meeting clinician information needs by integrating access to the medical record and knowledge resources via the Web.

    PubMed

    Tarczy-Hornoch, P; Kwan-Gett, T S; Fouche, L; Hoath, J; Fuller, S; Ibrahim, K N; Ketchell, D S; LoGerfo, J P; Goldberg, H I

    1997-01-01

    MINDscape is a web based integrated interface to diverse sources of clinical information including both patient specific information (electronic medical record) as well as medical knowledge (the "digital library") to provide "just in time" information at the point of care. It was developed at the University of Washington to meet clinical information needs both as identified locally and by a review of the literature. Beta testing by over 600 clinicians is in progress and medical centers wide access scheduled for Fall 1997. We describe the information needs we sought to meet and the ongoing evaluation approach we are taking to ensure the information needs of a diverse group of clinicians are met. The iterative evolution of the interface from prototype, to alpha to large scale beta testing is reported. Integration of information occurs at three levels: integration of information by patient, integration of information by provider, and integration of patient specific information with medical reference material and decision support tools.

  16. Web document engineering

    SciTech Connect

    White, B.

    1996-05-01

    This tutorial provides an overview of several document engineering techniques which are applicable to the authoring of World Wide Web documents. It illustrates how pre-WWW hypertext research is applicable to the development of WWW information resources.

  17. Internet Instruction: Spreading the Web.

    ERIC Educational Resources Information Center

    McDermott, Irene E.

    2000-01-01

    Offers suggestions to librarians on how to teach Internet use and Web searching to beginners. Highlights include active learning, including small group assignments; Web addresses; Web site authority, currency, accuracy, commercialism, and scope; critical thinking skills; the training environment; student exercises; and educational resources for…

  18. Amphipod-supported food web: Themisto gaudichaudii, a key food resource for fishes in the southern Patagonian Shelf

    NASA Astrophysics Data System (ADS)

    Padovani, Luciano N.; Viñas, María Delia; Sánchez, Felisa; Mianzan, Hermes

    2012-01-01

    The trophic role of the hyperiid amphipod Themisto gaudichaudii in the southern Patagonian shelf food web was assessed from the analysis of stomach contents of the local fish assemblage. A total of 461 trawl samples were collected during seven seasonal cruises. A total of 17 out of 38 fish species were found to ingest T. gaudichaudii. This amphipod was a main prey item in five of these species, showing high values of alimentary index: Seriolella porosa (99.9%), Macruronus magellanicus (68.8%), Micromesistius australis (59.1%), Patagonotothen ramsayi (48.6%), and Merluccius hubbsi (10.9%). The contribution of T. gaudichaudii, in weight, to their summer diet was 60%, on average. This contribution was minimal in winter and maximal in summer. Fisheries studies have indicated that these five species, mainly M. magellanicus, account for almost 85% of the fish biomass in the area. Although the remaining 15% did not feed heavily on T. gaudichaudii, they are known to prey on the main hyperiid predators. Our study shows that T. gaudichaudii contributes greatly, both directly and indirectly, to supporting the fish community. We thus proposed that T. gaudichaudii plays a key role as a "wasp-waist" species in the sub-Antarctic region, similar to that of krill in Antarctic waters, channeling the energy flow and enabling a short and efficient food chain.

  19. The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species.

    PubMed

    Childs, Kevin L; Konganti, Kranti; Buell, C Robin

    2012-01-01

    Major feedstock sources for future biofuel production are likely to be high biomass producing plant species such as poplar, pine, switchgrass, sorghum and maize. One active area of research in these species is genome-enabled improvement of lignocellulosic biofuel feedstock quality and yield. To facilitate genomic-based investigations in these species, we developed the Biofuel Feedstock Genomic Resource (BFGR), a database and web-portal that provides high-quality, uniform and integrated functional annotation of gene and transcript assembly sequences from species of interest to lignocellulosic biofuel feedstock researchers. The BFGR includes sequence data from 54 species and permits researchers to view, analyze and obtain annotation at the gene, transcript, protein and genome level. Annotation of biochemical pathways permits the identification of key genes and transcripts central to the improvement of lignocellulosic properties in these species. The integrated nature of the BFGR in terms of annotation methods, orthologous/paralogous relationships and linkage to seven species with complete genome sequences allows comparative analyses for biofuel feedstock species with limited sequence resources. Database URL: http://bfgr.plantbiology.msu.edu.

  20. Proposition and Organization of an Adaptive Learning Domain Based on Fusion from the Web

    ERIC Educational Resources Information Center

    Chaoui, Mohammed; Laskri, Mohamed Tayeb

    2013-01-01

    The Web allows self-navigated education through interaction with large amounts of Web resources. While enjoying the flexibility of Web tools, authors may suffer from research and filtering Web resources, when they face various resources formats and complex structures. An adaptation of extracted Web resources must be assured by authors, to give…

  1. ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes.

    PubMed

    Hashemikhabir, Seyedsasan; Budak, Gungor; Janga, Sarath Chandra

    2016-01-01

    Survival analysis in biomedical sciences is generally performed by correlating the levels of cellular components with patients' clinical features as a common practice in prognostic biomarker discovery. While the common and primary focus of such analysis in cancer genomics so far has been to identify the potential prognostic genes, alternative splicing - a posttranscriptional regulatory mechanism that affects the functional form of a protein due to inclusion or exclusion of individual exons giving rise to alternative protein products, has increasingly gained attention due to the prevalence of splicing aberrations in cancer transcriptomes. Hence, uncovering the potential prognostic exons can not only help in rationally designing exon-specific therapeutics but also increase specificity toward more personalized treatment options. To address this gap and to provide a platform for rational identification of prognostic exons from cancer transcriptomes, we developed ExSurv (https://exsurv.soic.iupui.edu), a web-based platform for predicting the survival contribution of all annotated exons in the human genome using RNA sequencing-based expression profiles for cancer samples from four cancer types available from The Cancer Genome Atlas. ExSurv enables users to search for a gene of interest and shows survival probabilities for all the exons associated with a gene and found to be significant at the chosen threshold. ExSurv also includes raw expression values across the cancer cohort as well as the survival plots for prognostic exons. Our analysis of the resulting prognostic exons across four cancer types revealed that most of the survival-associated exons are unique to a cancer type with few processes such as cell adhesion, carboxylic, fatty acid metabolism, and regulation of T-cell signaling common across cancer types, possibly suggesting significant differences in the posttranscriptional regulatory pathways contributing to prognosis. PMID:27528797

  2. ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes

    PubMed Central

    Hashemikhabir, Seyedsasan; Budak, Gungor; Janga, Sarath Chandra

    2016-01-01

    Survival analysis in biomedical sciences is generally performed by correlating the levels of cellular components with patients’ clinical features as a common practice in prognostic biomarker discovery. While the common and primary focus of such analysis in cancer genomics so far has been to identify the potential prognostic genes, alternative splicing – a posttranscriptional regulatory mechanism that affects the functional form of a protein due to inclusion or exclusion of individual exons giving rise to alternative protein products, has increasingly gained attention due to the prevalence of splicing aberrations in cancer transcriptomes. Hence, uncovering the potential prognostic exons can not only help in rationally designing exon-specific therapeutics but also increase specificity toward more personalized treatment options. To address this gap and to provide a platform for rational identification of prognostic exons from cancer transcriptomes, we developed ExSurv (https://exsurv.soic.iupui.edu), a web-based platform for predicting the survival contribution of all annotated exons in the human genome using RNA sequencing-based expression profiles for cancer samples from four cancer types available from The Cancer Genome Atlas. ExSurv enables users to search for a gene of interest and shows survival probabilities for all the exons associated with a gene and found to be significant at the chosen threshold. ExSurv also includes raw expression values across the cancer cohort as well as the survival plots for prognostic exons. Our analysis of the resulting prognostic exons across four cancer types revealed that most of the survival-associated exons are unique to a cancer type with few processes such as cell adhesion, carboxylic, fatty acid metabolism, and regulation of T-cell signaling common across cancer types, possibly suggesting significant differences in the posttranscriptional regulatory pathways contributing to prognosis. PMID:27528797

  3. School and Library Media. Introduction; The Uniform Computer Information Transactions Act (UCITA): More Critical for Educators than Copyright Law?; Redefining Professional Growth: New Attitudes, New Tools--A Case Study; Diversity in School Library Media Center Resources; Image-Text Relationships in Web Pages; Aiming for Effective Student Learning in Web-Based Courses: Insights from Student Experiences.

    ERIC Educational Resources Information Center

    Fitzgerald, Mary Ann; Gregory, Vicki L.; Brock, Kathy; Bennett, Elizabeth; Chen, Shu-Hsien Lai; Marsh, Emily; Moore, Joi L.; Kim, Kyung-Sun; Esser, Linda R.

    2002-01-01

    Chapters in this section of "Educational Media and Technology Yearbook" examine important trends prominent in the landscape of the school library media profession in 2001. Themes include mandated educational reform; diversity in school library resources; communication through image-text juxtaposition in Web pages; and professional development and…

  4. On the Cutting Edge Professional Development Program: Workshop and Web Resources for Current and Future Geoscience Faculty

    NASA Astrophysics Data System (ADS)

    MacDonald, R.; Manduca, C. A.; Mogk, D. W.; Tewksbury, B. J.

    2004-12-01

    Recognizing that many college and university faculty receive little formal training in teaching, are largely unaware of advances in research on teaching and learning, and face a variety of challenges in advancing in academic careers, the National Science Foundation-funded program On the Cutting Edge provides professional development for current and future faculty in the geosciences at various stages in their careers. The program includes a series of six multi-day workshops, sessions and one-day workshops at professional meetings, and a website with information about workshop opportunities and a variety of resources that bring workshop content to faculty (http://serc.carleton.edu/NAGTWorkshops). The program helps faculty improve their teaching and their job satisfaction by providing resources on instructional methods, geoscience content, and strategies for career planning. Workshop and website resources address innovative and effective practices in teaching, course design, delivery of instructional materials, and career planning, as well as approaches for teaching particular topics and strategies for starting and maintaining a research program in various institutional settings. Each year, special workshops for graduate students and post-doctoral fellows interested in academic careers and for early career faculty complement offerings on course design and emerging topics that are open to the full geoscience community. These special workshops include sessions on topics such as dual careers, gender issues, family-work balance, interviewing and negotiating strategies. The workshops serve as opportunities for networking and community building, with participants building connections with other participants as well as workshop leaders. Workshop participants reflect the full range of institutional diversity as well as ethnic and racial diversity beyond that of the geoscience faculty workforce. More than 40 percent of the faculty participants are female. Of the faculty

  5. Studying with the cloud: the use of online Web-based resources to augment a traditional study group format.

    PubMed

    Chan, Teresa; Sennik, Serena; Zaki, Amna; Trotter, Brendon

    2015-03-01

    Cloud-based applications such as Google Docs, Skype, Dropbox, and SugarSync are revolutionizing the way that we interact with the world. Members of the millennial generation (those born after 1980) are now becoming senior residents and junior attending physicians. We describe a novel technique combining Internet- and cloud-based methods to digitally augment the classic study group used by final-year residents studying for the Royal College of Physicians and Surgeons of Canada examination. This material was developed by residents and improved over the course of 18 months. This is an innovation report about a process for enhanced communication and collaboration as there has been little research to date regarding the augmentation of learner-driven initiatives with virtual resources. PMID:25927263

  6. Caught on the Web

    ERIC Educational Resources Information Center

    Isakson, Carol

    2006-01-01

    In this article, the author presents Web sites about teen use of online social networks and age-appropriate resources. These resources can be used for teaching students ways in which to use these networks safely and ethically. Among other things, "Social Network Service" entry in Wikipedia, offers a description and a "List of Social Networking…

  7. Projections of costs, financing, and additional resource requirements for low- and lower middle-income country immunization programs over the decade, 2011-2020.

    PubMed

    Gandhi, Gian; Lydon, Patrick; Cornejo, Santiago; Brenzel, Logan; Wrobel, Sandra; Chang, Hugh

    2013-04-18

    The Decade of Vaccines Global Vaccine Action Plan has outlined a set of ambitious goals to broaden the impact and reach of immunization across the globe. A projections exercise has been undertaken to assess the costs, financing availability, and additional resource requirements to achieve these goals through the delivery of vaccines against 19 diseases across 94 low- and middle-income countries for the period 2011-2020. The exercise draws upon data from existing published and unpublished global forecasts, country immunization plans, and costing studies. A combination of an ingredients-based approach and use of approximations based on past spending has been used to generate vaccine and non-vaccine delivery costs for routine programs, as well as supplementary immunization activities (SIAs). Financing projections focused primarily on support from governments and the GAVI Alliance. Cost and financing projections are presented in constant 2010 US dollars (US$). Cumulative total costs for the decade are projected to be US$57.5 billion, with 85% for routine programs and the remaining 15% for SIAs. Delivery costs account for 54% of total cumulative costs, and vaccine costs make up the remainder. A conservative estimate of total financing for immunization programs is projected to be $34.3 billion over the decade, with country governments financing 65%. These projections imply a cumulative funding gap of $23.2 billion. About 57% of the total resources required to close the funding gap are needed just to maintain existing programs and scale up other currently available vaccines (i.e., before adding in the additional costs of vaccines still in development). Efforts to mobilize additional resources, manage program costs, and establish mutual accountability between countries and development partners will all be necessary to ensure the goals of the Decade of Vaccines are achieved. Establishing or building on existing mechanisms to more comprehensively track resources and

  8. Reference Materials on the World Wide Web.

    ERIC Educational Resources Information Center

    Kitao, Kenji

    2002-01-01

    This paper presents information about World Wide Web resources for English language teachers and students and for communication scholars and researchers. The first Web page, "Reference Materials for Students and Researchers," offers links to resources in English. Because there are many Web sites related to dictionaries, a second page, "Reference…

  9. The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction.

    PubMed

    Roche, Daniel B; Buenavista, Maria T; Tetchner, Stuart J; McGuffin, Liam J

    2011-07-01

    The IntFOLD server is a novel independent server that integrates several cutting edge methods for the prediction of structure and function from sequence. Our guiding principles behind the server development were as follows: (i) to provide a simple unified resource that makes our prediction software accessible to all and (ii) to produce integrated output for predictions that can be easily interpreted. The output for predictions is presented as a simple table that summarizes all results graphically via plots and annotated 3D models. The raw machine readable data files for each set of predictions are also provided for developers, which comply with the Critical Assessment of Methods for Protein Structure Prediction (CASP) data standards. The server comprises an integrated suite of five novel methods: nFOLD4, for tertiary structure prediction; ModFOLD 3.0, for model quality assessment; DISOclust 2.0, for disorder prediction; DomFOLD 2.0 for domain prediction; and FunFOLD 1.0, for ligand binding site prediction. Predictions from the IntFOLD server were found to be competitive in several categories in the recent CASP9 experiment. The IntFOLD server is available at the following web site: http://www.reading.ac.uk/bioinf/IntFOLD/.

  10. Web-Based Resources to Help Students and Faculty Prepare to use Information Technology in the Field

    NASA Astrophysics Data System (ADS)

    Mogk, D. W.

    2007-12-01

    Teaching in the field is undergoing a revolution as new information technologies are being used to support a wide range of instructional activities in geology, oceanography, ecology, and related disciplines. In particular, the use of ruggedized laptop and palmtop computers with integrated GPS, GIS, data management, imaging and note-taking software presents a fundamentally new way to map and collect other data in the field. By bringing information technologies into the field, it is now possible to integrate many types of data such as digital elevation maps, air photo and satellite imagery, a variety of geophysical and geochemical databases (e.g. chemical anomaly maps, aeromagnetics, gravity). This allows students to engage much deeper levels of decision-making, problem-solving, and critical-thinking while still in the field setting. This technology also allows instructors to more closely monitor the progress of student projects in the field, and to assess the process as well as the products of student field work. For professional geologists, data acquisition and interpretation using digital technology in the field will rapidly become the industry standard, and now is the time to begin to prepare students to regularly use these new capabilities. To address the new possibilities of teaching with information technology in the field, a workshop was convened in February 2007 at Montana State University to aggregate and disseminate the practical advice and experience of geoscience instructors already using this technology. The outcome of this workshop is a website that contains advice on "best practices" in using these information technologies in field instruction including sections on: definition of learning goals, thinking skills and problem solving strategies, student and faculty preparation, selecting hardware and software, data resources, logistical consideration, GPS and learning, taking e-notes, mobile collaborations, and examples of field exercises. This website

  11. Food Resources of Stream Macronivertebrates Determined by Natural-Abundance stable C and N Isotopes and a 15N Tracer Addition

    SciTech Connect

    Mulholland, P. J.

    2000-01-01

    Trophic relationships were examined using natural-abundance {sup 13}C and {sup 15}N analyses and a {sup 15}N-tracer addition experiment in Walker Branch, a 1st-order forested stream in eastern Tennessee. In the {sup 15}N-tracer addition experiment, we added {sup 15}NH{sub 4} to stream water over a 6-wk period in early spring, and measured {sup 15}N:{sup 14}N ratios in different taxa and biomass compartments over distance and time. Samples collected from a station upstream from the {sup 15}N addition provided data on natural-abundance {sup 13}C:{sup 12}C and {sup 15}N:{sup 14}N ratios. The natural-abundance {sup 15}N analysis proved to be of limited value in identifying food resources of macroinvertebrates because {sup 15}N values were not greatly different among food resources. In general, the natural-abundance stable isotope approach was most useful for determining whether epilithon or detritus were important food resources for organisms that may use both (e.g., the snail Elimia clavaeformis), and to provide corroborative evidence of food resources of taxa for which the {sup 15}N tracer results were not definitive. The {sup 15}N tracer results showed that the mayflies Stenonema spp. and Baetis spp. assimilated primarily epilithon, although Baetis appeared to assimilate a portion of the epilithon (e.g., algal cells) with more rapid N turnover than the bulk pool sampled. Although Elimia did not reach isotopic equilibrium during the tracer experiment, application of a N-turnover model to the field data suggested that it assimilated a combination of epilithon and detritus. The amphipod Gammarus minus appeared to depend mostly on fine benthic organic matter (FBOM), and the coleopteran Anchytarsus bicolor on epixylon. The caddisfly Diplectrona modesta appeared to assimilate primarily a fast N-turnover portion of the FBOM pool, and Simuliidae a fast N-turnover component of the suspended particulate organic matter pool rather than the bulk pool sampled. Together, the

  12. Opal web services for biomedical applications

    PubMed Central

    Ren, Jingyuan; Williams, Nadya; Clementi, Luca; Krishnan, Sriram; Li, Wilfred W.

    2010-01-01

    Biomedical applications have become increasingly complex, and they often require large-scale high-performance computing resources with a large number of processors and memory. The complexity of application deployment and the advances in cluster, grid and cloud computing require new modes of support for biomedical research. Scientific Software as a Service (sSaaS) enables scalable and transparent access to biomedical applications through simple standards-based Web interfaces. Towards this end, we built a production web server (http://ws.nbcr.net) in August 2007 to support the bioinformatics application called MEME. The server has grown since to include docking analysis with AutoDock and AutoDock Vina, electrostatic calculations using PDB2PQR and APBS, and off-target analysis using SMAP. All the applications on the servers are powered by Opal, a toolkit that allows users to wrap scientific applications easily as web services without any modification to the scientific codes, by writing simple XML configuration files. Opal allows both web forms-based access and programmatic access of all our applications. The Opal toolkit currently supports SOAP-based Web service access to a number of popular applications from the National Biomedical Computation Resource (NBCR) and affiliated collaborative and service projects. In addition, Opal’s programmatic access capability allows our applications to be accessed through many workflow tools, including Vision, Kepler, Nimrod/K and VisTrails. From mid-August 2007 to the end of 2009, we have successfully executed 239 814 jobs. The number of successfully executed jobs more than doubled from 205 to 411 per day between 2008 and 2009. The Opal-enabled service model is useful for a wide range of applications. It provides for interoperation with other applications with Web Service interfaces, and allows application developers to focus on the scientific tool and workflow development. Web server availability: http://ws.nbcr.net. PMID

  13. Opal web services for biomedical applications.

    PubMed

    Ren, Jingyuan; Williams, Nadya; Clementi, Luca; Krishnan, Sriram; Li, Wilfred W

    2010-07-01

    Biomedical applications have become increasingly complex, and they often require large-scale high-performance computing resources with a large number of processors and memory. The complexity of application deployment and the advances in cluster, grid and cloud computing require new modes of support for biomedical research. Scientific Software as a Service (sSaaS) enables scalable and transparent access to biomedical applications through simple standards-based Web interfaces. Towards this end, we built a production web server (http://ws.nbcr.net) in August 2007 to support the bioinformatics application called MEME. The server has grown since to include docking analysis with AutoDock and AutoDock Vina, electrostatic calculations using PDB2PQR and APBS, and off-target analysis using SMAP. All the applications on the servers are powered by Opal, a toolkit that allows users to wrap scientific applications easily as web services without any modification to the scientific codes, by writing simple XML configuration files. Opal allows both web forms-based access and programmatic access of all our applications. The Opal toolkit currently supports SOAP-based Web service access to a number of popular applications from the National Biomedical Computation Resource (NBCR) and affiliated collaborative and service projects. In addition, Opal's programmatic access capability allows our applications to be accessed through many workflow tools, including Vision, Kepler, Nimrod/K and VisTrails. From mid-August 2007 to the end of 2009, we have successfully executed 239,814 jobs. The number of successfully executed jobs more than doubled from 205 to 411 per day between 2008 and 2009. The Opal-enabled service model is useful for a wide range of applications. It provides for interoperation with other applications with Web Service interfaces, and allows application developers to focus on the scientific tool and workflow development. Web server availability: http://ws.nbcr.net.

  14. Mineral resources of the Sheep Mountain Wilderness study area and the Cucamonga Wilderness and additions, Los Angeles and San Bernardino counties, California

    USGS Publications Warehouse

    Evans, James G.; Pankraatz, Leroy; Ridenour, James; Schmauch, Steven W.; Zilka, Nicholas T.

    1977-01-01

    A mineral survey of the Sheep Mountain Wilderness study area and Cucamonga Wilderness area and additions by the U.S. Geological Survey and Bureau of Mines in 1975 covered about 66,500 acres (26,500 ha) of the San Bernardino and Angeles National Forests in southern California. The two study areas are separated by San Antonio Canyon. The mineral resource potential was evaluated through geological, geochemical, and geophysical studies by the Geological Survey and through evaluation of mines and prospects by the Bureau of Mines.

  15. Ideas for Effective Web-based Instruction.

    ERIC Educational Resources Information Center

    Waters, Bill

    1999-01-01

    Offers ideas for developing a Web-based course in music education, addressing such issues as the transmission of audio information, real-time communication, and testing and copyright. Provides selected resources for Web-based instruction. (CMK)

  16. A Comparison of the Practices Used by Human Resource Development Professionals to Evaluate Web-Based and Classroom-Based Training Programs within Seven Korean Companies

    ERIC Educational Resources Information Center

    Kong, Younghee Jessie

    2009-01-01

    The purpose of the study was to compare the practices used by HRD professionals to evaluate web-based and classroom-based training programs within seven Korean companies. This study used four components of evaluation to examine how HRD professionals evaluated web-based and classroom-based training programs in their organizations and compared the…

  17. Interactive cell modeling web-resource, iCell, as a simulation-based teaching and learning tool to supplement electrophysiology education.

    PubMed

    Demir, Semahat S

    2006-07-01

    An interactive cell modeling web site, iCell (http://ssd1.bme.memphis.edu/icell/), that integrates research and education, was developed to present and to disseminate JAVA-coded models of cellular activities, and to supplement physiology education. iCell can be used to supplement the text-book material as a simulation-based teaching and learning tool. Specifically, iCell allows the students to supplement their learning experiences of the text-book cellular physiology material by running simulations in an interactive environment. The site consists of JAVA-coded models of various cardiac cells and neurons, and provides simulation data of their bioelectric transport activities at cellular level. Each JAVA-coded model allows the user to go through menu options to change model parameters, run and view simulation results. The site also has a glossary section for the scientific terms. iCell has been used as a teaching and learning tool for seven graduate courses at the Joint Biomedical Engineering Program of University of Memphis and University of Tennessee. This modeling tool was also used as a collaboration site among our physiology colleagues interested in simulations of cell membrane activities. Scientists from the fields of biosciences, engineering, life sciences and medical sciences in 17 countries have tested and utilized iCell as a simulation-based teaching, learning and collaboration environment. iCell provides us with an interactive, platform-independent, and user-friendly teaching and learning resource, and also a collaboration environment for electrophysiology to be shared over the Internet. The usage of simulations for teaching and learning will continue advancing simulation-based engineering and sciences for research and development.

  18. Surfing the World Wide Web to Education Hot-Spots.

    ERIC Educational Resources Information Center

    Dyrli, Odvard Egil

    1995-01-01

    Provides a brief explanation of Web browsers and their use, as well as technical information for those considering access to the WWW (World Wide Web). Curriculum resources and addresses to useful Web sites are included. Sidebars show sample searches using Yahoo and Lycos search engines, and a list of recommended Web resources. (JKP)

  19. WEBCAP: Web Scheduler for Distance Learning Multimedia Documents with Web Workload Considerations

    ERIC Educational Resources Information Center

    Habib, Sami; Safar, Maytham

    2008-01-01

    In many web applications, such as the distance learning, the frequency of refreshing multimedia web documents places a heavy burden on the WWW resources. Moreover, the updated web documents may encounter inordinate delays, which make it difficult to retrieve web documents in time. Here, we present an Internet tool called WEBCAP that can schedule…

  20. WebCHECK: The Website Evaluation Instrument

    ERIC Educational Resources Information Center

    Small, Ruth V.; Arnone, Marilyn P.

    2014-01-01

    Just as with print resources, as the number of Web-based resources continues to soar, the need to evaluate them has become a critical information skill for both children and adults. This is particularly true for schools where librarians often are called on to recommend Web resources to classroom teachers, parents, and students, and to support…

  1. Charting Our Path with a Web Literacy Map

    ERIC Educational Resources Information Center

    Dalton, Bridget

    2015-01-01

    Being a literacy teacher today means being a teacher of Web literacies. This article features the "Web Literacy Map", an open source tool from Mozilla's Webmaker project. The map focuses on Exploring (Navigating the Web); Building (creating for the Web), and Connecting (Participating on the Web). Readers are invited to use resources,…

  2. The semantic web in translational medicine: current applications and future directions

    PubMed Central

    Machado, Catia M.; Rebholz-Schuhmann, Dietrich; Freitas, Ana T.; Couto, Francisco M.

    2015-01-01

    Semantic web technologies offer an approach to data integration and sharing, even for resources developed independently or broadly distributed across the web. This approach is particularly suitable for scientific domains that profit from large amounts of data that reside in the public domain and that have to be exploited in combination. Translational medicine is such a domain, which in addition has to integrate private data from the clinical domain with proprietary data from the pharmaceutical domain. In this survey, we present the results of our analysis of translational medicine solutions that follow a semantic web approach. We assessed these solutions in terms of their target medical use case; the resources covered to achieve their objectives; and their use of existing semantic web resources for the purposes of data sharing, data interoperability and knowledge discovery. The semantic web technologies seem to fulfill their role in facilitating the integration and exploration of data from disparate sources, but it is also clear that simply using them is not enough. It is fundamental to reuse resources, to define mappings between resources, to share data and knowledge. All these aspects allow the instantiation of translational medicine at the semantic web-scale, thus resulting in a network of solutions that can share resources for a faster transfer of new scientific results into the clinical practice. The envisioned network of translational medicine solutions is on its way, but it still requires resolving the challenges of sharing protected data and of integrating semantic-driven technologies into the clinical practice. PMID:24197933

  3. The semantic web in translational medicine: current applications and future directions.

    PubMed

    Machado, Catia M; Rebholz-Schuhmann, Dietrich; Freitas, Ana T; Couto, Francisco M

    2015-01-01

    Semantic web technologies offer an approach to data integration and sharing, even for resources developed independently or broadly distributed across the web. This approach is particularly suitable for scientific domains that profit from large amounts of data that reside in the public domain and that have to be exploited in combination. Translational medicine is such a domain, which in addition has to integrate private data from the clinical domain with proprietary data from the pharmaceutical domain. In this survey, we present the results of our analysis of translational medicine solutions that follow a semantic web approach. We assessed these solutions in terms of their target medical use case; the resources covered to achieve their objectives; and their use of existing semantic web resources for the purposes of data sharing, data interoperability and knowledge discovery. The semantic web technologies seem to fulfill their role in facilitating the integration and exploration of data from disparate sources, but it is also clear that simply using them is not enough. It is fundamental to reuse resources, to define mappings between resources, to share data and knowledge. All these aspects allow the instantiation of translational medicine at the semantic web-scale, thus resulting in a network of solutions that can share resources for a faster transfer of new scientific results into the clinical practice. The envisioned network of translational medicine solutions is on its way, but it still requires resolving the challenges of sharing protected data and of integrating semantic-driven technologies into the clinical practice.

  4. Dynamic Space for Rent: Using Commercial Web Hosting to Develop a Web 2.0 Intranet

    ERIC Educational Resources Information Center

    Hodgins, Dave

    2010-01-01

    The explosion of Web 2.0 into libraries has left many smaller academic libraries (and other libraries with limited computing resources or support) to work in the cloud using free Web applications. The use of commercial Web hosting is an innovative approach to the problem of inadequate local resources. While the idea of insourcing IT will seem…

  5. Borderless Geospatial Web (bolegweb)

    NASA Astrophysics Data System (ADS)

    Cetl, V.; Kliment, T.; Kliment, M.

    2016-06-01

    The effective access and use of geospatial information (GI) resources acquires a critical value of importance in modern knowledge based society. Standard web services defined by Open Geospatial Consortium (OGC) are frequently used within the implementations of spatial data infrastructures (SDIs) to facilitate discovery and use of geospatial data. This data is stored in databases located in a layer, called the invisible web, thus are ignored by search engines. SDI uses a catalogue (discovery) service for the web as a gateway to the GI world through the metadata defined by ISO standards, which are structurally diverse to OGC metadata. Therefore, a crosswalk needs to be implemented to bridge the OGC resources discovered on mainstream web with those documented by metadata in an SDI to enrich its information extent. A public global wide and user friendly portal of OGC resources available on the web ensures and enhances the use of GI within a multidisciplinary context and bridges the geospatial web from the end-user perspective, thus opens its borders to everybody. Project "Crosswalking the layers of geospatial information resources to enable a borderless geospatial web" with the acronym BOLEGWEB is ongoing as a postdoctoral research project at the Faculty of Geodesy, University of Zagreb in Croatia (http://bolegweb.geof.unizg.hr/). The research leading to the results of the project has received funding from the European Union Seventh Framework Programme (FP7 2007-2013) under Marie Curie FP7-PEOPLE-2011-COFUND. The project started in the November 2014 and is planned to be finished by the end of 2016. This paper provides an overview of the project, research questions and methodology, so far achieved results and future steps.

  6. BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature

    PubMed Central

    de la Calle, Guillermo; García-Remesal, Miguel; Chiesa, Stefano; de la Iglesia, Diana; Maojo, Victor

    2009-01-01

    Background The rapid evolution of Internet technologies and the collaborative approaches that dominate the field have stimulated the development of numerous bioinformatics resources. To address this new framework, several initiatives have tried to organize these services and resources. In this paper, we present the BioInformatics Resource Inventory (BIRI), a new approach for automatically discovering and indexing available public bioinformatics resources using information extracted from the scientific literature. The index generated can be automatically updated by adding additional manuscripts describing new resources. We have developed web services and applications to test and validate our approach. It has not been designed to replace current indexes but to extend their capabilities with richer functionalities. Results We developed a web service to provide a set of high-level query primitives to access the index. The web service can be used by third-party web services or web-based applications. To test the web service, we created a pilot web application to access a preliminary knowledge base of resources. We tested our tool using an initial set of 400 abstracts. Almost 90% of the resources described in the abstracts were correctly classified. More than 500 descriptions of functionalities were extracted. Conclusion These experiments suggest the feasibility of our approach for automatically discovering and indexing current and future bioinformatics resources. Given the domain-independent characteristics of this tool, it is currently being applied by the authors in other areas, such as medical nanoinformatics. BIRI is available at . PMID:19811635

  7. Collaborative Authoring on the Web: Introducing WebDAV.

    ERIC Educational Resources Information Center

    Whitehead, E. James, Jr.

    1998-01-01

    Discusses the WebDAV Distributed Authoring Protocol which provides standards that allow easier collaborative authoring over the World Wide Web. Topics include Hypertext Transfer Protocol (HTTP), overwrite prevention, access control, searching, metadata, XML (Extensible Markup Language), and Uniform Resource Identifier (URI). (LRW)

  8. Application of information theory methods to food web reconstruction

    USGS Publications Warehouse

    Moniz, L.J.; Cooch, E.G.; Ellner, S.P.; Nichols, J.D.; Nichols, J.M.

    2007-01-01

    In this paper we use information theory techniques on time series of abundances to determine the topology of a food web. At the outset, the food web participants (two consumers, two resources) are known; in addition we know that each consumer prefers one of the resources over the other. However, we do not know which consumer prefers which resource, and if this preference is absolute (i.e., whether or not the consumer will consume the non-preferred resource). Although the consumers and resources are identified at the beginning of the experiment, we also provide evidence that the consumers are not resources for each other, and the resources do not consume each other. We do show that there is significant mutual information between resources; the model is seasonally forced and some shared information between resources is expected. Similarly, because the model is seasonally forced, we expect shared information between consumers as they respond to the forcing of the resources. The model that we consider does include noise, and in an effort to demonstrate that these methods may be of some use in other than model data, we show the efficacy of our methods with decreasing time series size; in this particular case we obtain reasonably clear results with a time series length of 400 points. This approaches ecological time series lengths from real systems.

  9. Web-dendritic ribbon growth

    NASA Technical Reports Server (NTRS)

    Hilborn, R. B., Jr.; Faust, J. W., Jr.

    1976-01-01

    A web furnace was constructed for pulling dendritic-web samples. The effect of changes in the furnace thermal geometry on the growth of dendritic-web was studied. Several attempts were made to grow primitive dendrites for use as the dendritic seed crystals for web growth and to determine the optimum twin spacing in the dendritic seed crystal for web growth. Mathematical models and computer programs were used to determine the thermal geometries in the susceptor, crucible melt, meniscus, and web. Several geometries were determined for particular furnace geometries and growth conditions. The information obtained was used in conjunction with results from the experimental growth investigations in order to achieve proper conditions for sustained pulling of two dendrite web ribbons. In addition, the facilities for obtaining the following data were constructed: twin spacing, dislocation density, web geometry, resistivity, majority charge carrier type, and minority carrier lifetime.

  10. Web Development Simplified

    ERIC Educational Resources Information Center

    Becker, Bernd W.

    2010-01-01

    The author has discussed the Multimedia Educational Resource for Teaching and Online Learning site, MERLOT, in a recent Electronic Roundup column. In this article, he discusses an entirely new Web page development tool that MERLOT has added for its members. The new tool is called the MERLOT Content Builder and is directly integrated into the…

  11. WebWatch.

    ERIC Educational Resources Information Center

    Newcombe, Pat

    2002-01-01

    Reviews ten Web sites that are designed to answer basic legal questions for the layperson. They provide resources on a broad range of legal topics, such as divorce, real estate, and criminal justice, as well as legal forms and information on finding a lawyer. (LRW)

  12. Underwater Web Work

    ERIC Educational Resources Information Center

    Wighting, Mervyn J.; Lucking, Robert A.; Christmann, Edwin P.

    2004-01-01

    Teachers search for ways to enhance oceanography units in the classroom. There are many online resources available to help one explore the mysteries of the deep. This article describes a collection of Web sites on this topic appropriate for middle level classrooms.

  13. Designing a Web Page.

    ERIC Educational Resources Information Center

    Ackermann, Ernest; Hartman, Karen

    2000-01-01

    Presents technical issues, design considerations and resource sites to consider when designing a Web site. Discusses fonts; colors; screen resolutions; statement of purpose; audience; content; layout; size and number of images; spacing and emphasis; browser-supported features; grammar and spelling; revision/improvement; and testing. (AEF)

  14. Yahoo! Cataloging the Web.

    ERIC Educational Resources Information Center

    Callery, Anne

    The Internet has the potential to be the ultimate information resource, but it needs to be organized in order to be useful. This paper discusses how the subject guide, "Yahoo!" is different from most web search engines, and how best to search for information on Yahoo! The strength in Yahoo! lies in the subject hierarchy. Advantages to searching a…

  15. Information Architecture for Bilingual Web Sites.

    ERIC Educational Resources Information Center

    Cunliffe, Daniel; Jones, Helen; Jarvis, Melanie; Egan, Kevin; Huws, Rhian; Munro, Sian

    2002-01-01

    Discusses creating an information architecture for a bilingual Web site and reports work in progress on the development of a content-based bilingual Web site to facilitate shared resources between speech and language therapists. Considers a structural analysis of existing bilingual Web designs and explains a card-sorting activity conducted with…

  16. The Organizational Role of Web Services

    ERIC Educational Resources Information Center

    Mitchell, Erik

    2011-01-01

    The workload of Web librarians is already split between Web-related and other library tasks. But today's technological environment has created new implications for existing services and new demands for staff time. It is time to reconsider how libraries can best allocate resources to provide effective Web services. Delivering high-quality services…

  17. Web Redemption and the Promise of Usability.

    ERIC Educational Resources Information Center

    Head, Alison J.

    1999-01-01

    Discusses usability as an interface design concept to improve information retrieval on the World Wide Web. Highlights include criteria for a usable Web site; usability testing; usability resources on the Web; and a sidebar that gives an example of usability testing by Hewlett-Packard. (LRW)

  18. In-Class Use of Course Webs.

    ERIC Educational Resources Information Center

    Rebelsky, Samuel A.

    This paper reports on a study undertaken to examine student usage of course webs (i.e., course materials and resources on the World Wide Web) in classroom situations in which computers are readily available and students are comfortable using hypertext systems. The author prepared course webs for two computer science courses at Grinnell College…

  19. The medical school Web site: medical education's newest tool.

    PubMed

    Goldenberg, D; Beyar, R

    2000-10-01

    There are few technological advancements that have had as much impact on the dissemination of information as the Internet, and especially the worldwide web. It is not surprising then that this tool is also changing the way medicine is studied, taught and practiced today. This impressive infrastructure enables us to teach and study medicine in an entirely different way. The web provides medical students and physicians with access to continuing medical education, patient education services, telemedicine, and unparalleled communication between colleagues via email. The medical school web site may be used as a dynamic newspaper or bulletin board to disseminate information internally among the faculty as well as to the outside world. It can also be the vehicle for virtual learning modules that enhance the medical school core curriculum by including lectures, exercises, tests, etc. In addition, the web allows the student access to medical literature, medical software applications and medical resource depots. To date no work has been published on the medical school web site, its construction process, and its advantages, drawbacks and future. The purpose of this article is to examine the evolution of the web as a tool for medical schools, medical students and associated physicians. We discuss the building of a web site for a medical faculty, and look to the future.

  20. APPRIS WebServer and WebServices

    PubMed Central

    Rodriguez, Jose Manuel; Carro, Angel; Valencia, Alfonso; Tress, Michael L.

    2015-01-01

    This paper introduces the APPRIS WebServer (http://appris.bioinfo.cnio.es) and WebServices (http://apprisws.bioinfo.cnio.es). Both the web servers and the web services are based around the APPRIS Database, a database that presently houses annotations of splice isoforms for five different vertebrate genomes. The APPRIS WebServer and WebServices provide access to the computational methods implemented in the APPRIS Database, while the APPRIS WebServices also allows retrieval of the annotations. The APPRIS WebServer and WebServices annotate splice isoforms with protein structural and functional features, and with data from cross-species alignments. In addition they can use the annotations of structure, function and conservation to select a single reference isoform for each protein-coding gene (the principal protein isoform). APPRIS principal isoforms have been shown to agree overwhelmingly with the main protein isoform detected in proteomics experiments. The APPRIS WebServer allows for the annotation of splice isoforms for individual genes, and provides a range of visual representations and tools to allow researchers to identify the likely effect of splicing events. The APPRIS WebServices permit users to generate annotations automatically in high throughput mode and to interrogate the annotations in the APPRIS Database. The APPRIS WebServices have been implemented using REST architecture to be flexible, modular and automatic. PMID:25990727

  1. The 2011 Bioinformatics Links Directory update: more resources, tools and databases and features to empower the bioinformatics community.

    PubMed

    Brazas, Michelle D; Yim, David S; Yamada, Joseph T; Ouellette, B F Francis

    2011-07-01

    The Bioinformatics Links Directory continues its collaboration with Nucleic Acids Research to collaboratively publish and compile a freely accessible, online collection of tools, databases and resource materials for bioinformatics and molecular biology research. The July 2011 Web Server issue of Nucleic Acids Research adds an additional 78 web server tools and 14 updates to the directory at http://bioinformatics.ca/links_directory/.

  2. Efficacy of the World Wide Web in K-12 environmental education

    NASA Astrophysics Data System (ADS)

    York, Kimberly Jane

    1998-11-01

    --12 schools. In addition, a small percentage of respondents for each survey reported they are already using the Web to find curricular resources. Most importantly, more than 86% of those responding to the Web-based survey indicated that they would visit and use an environmental education Web site designed specifically for teachers. Findings also indicate that time is a major constraint faced by teachers; Web sites must offer high-quality information and be easy to navigate. Finally, teachers reported having greater access to the Web and Web-based environmental information than they do to any kind of environmental education-related curriculum guides. Such findings indicate that further research and an investment of resources in Web-based environmental education are warranted.

  3. Outdoor Education across America: "Weaving the Web." Selected Papers, Activities, and Resources from the 1987 National Outdoor Education Conference (Cortland, New York, October 9-12, 1987).

    ERIC Educational Resources Information Center

    Yerkes, Rita, Comp.; And Others

    Selected through a refereed process from presentations given by speakers at the "1987 Outdoor Education across America: Weaving the Web" Conference, the content represents philosophy, ideas, program activities, and research of outdoor practitioners and leaders across America. The 25 presentations/workshops are summarized under the broad headings…

  4. Web Engineering

    SciTech Connect

    White, Bebo

    2003-06-23

    Web Engineering is the application of systematic, disciplined and quantifiable approaches to development, operation, and maintenance of Web-based applications. It is both a pro-active approach and a growing collection of theoretical and empirical research in Web application development. This paper gives an overview of Web Engineering by addressing the questions: (a) why is it needed? (b) what is its domain of operation? (c) how does it help and what should it do to improve Web application development? and (d) how should it be incorporated in education and training? The paper discusses the significant differences that exist between Web applications and conventional software, the taxonomy of Web applications, the progress made so far and the research issues and experience of creating a specialization at the master's level. The paper reaches a conclusion that Web Engineering at this stage is a moving target since Web technologies are constantly evolving, making new types of applications possible, which in turn may require innovations in how they are built, deployed and maintained.

  5. US Food and Drug Administration Web Site: A Primer for Pharmacists.

    PubMed

    Leonard, James; Baker, Danial E

    2015-11-01

    The US Food and Drug Administration (FDA) Web site includes a vast amount of information, but it can be difficult to navigate. Despite frequently asked question (FAQ)-type pages within the Web site, it may not be easy for first-time users to find drug information. This article presents some examples of common questions, provides the locations of the answers on the FDA Web site, and gives a brief description of some of the many resources the FDA provides for health care professionals. Additionally, a newer project being undertaken by the FDA, Snapshot, is introduced. PMID:27621506

  6. WebQuests: Tools for Differentiation

    ERIC Educational Resources Information Center

    Schweizer, Heidi; Kossow, Ben

    2007-01-01

    This article features the WebQuest, an inquiry-oriented activity in which some or all of the information that learners interact with comes from resources on the Internet. WebQuests, when properly constructed, are activities, usually authentic in nature, that require the student to use Internet-based resources to deepen their understanding and…

  7. ExPASy: SIB bioinformatics resource portal.

    PubMed

    Artimo, Panu; Jonnalagedda, Manohar; Arnold, Konstantin; Baratin, Delphine; Csardi, Gabor; de Castro, Edouard; Duvaud, Séverine; Flegel, Volker; Fortier, Arnaud; Gasteiger, Elisabeth; Grosdidier, Aurélien; Hernandez, Céline; Ioannidis, Vassilios; Kuznetsov, Dmitry; Liechti, Robin; Moretti, Sébastien; Mostaguir, Khaled; Redaschi, Nicole; Rossier, Grégoire; Xenarios, Ioannis; Stockinger, Heinz

    2012-07-01

    ExPASy (http://www.expasy.org) has worldwide reputation as one of the main bioinformatics resources for proteomics. It has now evolved, becoming an extensible and integrative portal accessing many scientific resources, databases and software tools in different areas of life sciences. Scientists can henceforth access seamlessly a wide range of resources in many different domains, such as proteomics, genomics, phylogeny/evolution, systems biology, population genetics, transcriptomics, etc. The individual resources (databases, web-based and downloadable software tools) are hosted in a 'decentralized' way by different groups of the SIB Swiss Institute of Bioinformatics and partner institutions. Specifically, a single web portal provides a common entry point to a wide range of resources developed and operated by different SIB groups and external institutions. The portal features a search function across 'selected' resources. Additionally, the availability and usage of resources are monitored. The portal is aimed for both expert users and people who are not familiar with a specific domain in life sciences. The new web interface provides, in particular, visual guidance for newcomers to ExPASy.

  8. WebGasEOS

    2005-10-01

    WebGasEOS provides quick, user-friendly access to real gas physical properties. Using the real gas properties modules of the TOUGH-Fx project, WebGasEOS allows any user, though a web- based application, to define a multicornponent system, specify temperature and pressure, select an equation of state, and compute volumetric, thermodynamic, and fluid properties. Additional functions allow the inclusion of gaseous or liquid water, with or without added salts. The user may choose the format of the results, performmore » repeat calculations or calculations over a range of temperature and pressure, or vary compositions by simply changing form parameters, The application is publicly available on the internet and can be used at any time by anyone with a standards-compliant web browser.« less

  9. World Wide Web Pages--Tools for Teaching and Learning.

    ERIC Educational Resources Information Center

    Beasley, Sarah; Kent, Jean

    Created to help educators incorporate World Wide Web pages into teaching and learning, this collection of Web pages presents resources, materials, and techniques for using the Web. The first page focuses on tools for teaching and learning via the Web, providing pointers to sites containing the following: (1) course materials for both distance and…

  10. Asynchronous OGC web services mechanisms

    NASA Astrophysics Data System (ADS)

    Min, Min; Di, Liping; Yu, Genong; Chen, Nengcheng; Gong, Jianya

    2008-12-01

    The Open Geospatial Consortium, Inc (OGC) Web Services (OWS) were initially primarily simple synchronous Web services based on the HTTP transport protocol, which is perfectly valid in the case of simple geoprocessing of simple data available from local sources. However, with the development of Web-based geospatial technologies, especially the development of the Sensor Web, a number of limitations have been identified with using HTTP-GET/POST binding in OGC OWS, which cannot meet the needs of asynchronous communication and operations between clients and services or in OGC services chain. Asynchronicity in Web services could be achieved in different ways. Callback pattern is widely supported in client asynchronous invocation. Message-based middleware often can be used together with the asynchronous invocation alternatives. Web Notification Service (WNS) is designed to provide asynchronous messagebased communication in OGC. This paper describes a mechanism for an asynchronous, message-based, event-driven, dynamic geospatial Web system based on OGC Web services. The addition of asynchronicity in OGC Web services has two components. One is the augmentation of OGC Web services with asynchronous message-based notification. The other is asynchronous OGC Web service orchestration based on BPEL.

  11. Teaching Tools: American Literature and the World Wide Web.

    ERIC Educational Resources Information Center

    Claxton, Mae Miller; Cooper, C. Camille

    2000-01-01

    Discusses 13 resources available to teachers of American literature on the World Wide Web including general resources, Internet sites related to electronic literature, and websites whose focus is American literature and culture. Discusses using and troubleshooting the World Wide Web in the classroom. Offers tips on how to evaluate web sources and…

  12. Public health and Web 2.0.

    PubMed

    Hardey, Michael

    2008-07-01

    This article examines the nature and role of Web 2.0 resources and their impact on health information made available though the Internet. The transition of the Web from version one to Web 2.0 is described and the main features of the new Web examined. Two characteristic Web 2.0 resources are explored and the implications for the public and practitioners examined. First, what are known as 'user reviews' or 'user testimonials', which allow people to comment on the health services delivered to them, are described. Second, new mapping applications that take advantage of the interactive potential of Web 2.0 and provide tools to visualize complex data are examined. Following a discussion of the potential of Web 2.0, it is concluded that it offers considerable opportunities for disseminating health information and creating new sources of data, as well as generating new questions and dilemmas.

  13. Hot Spots on the Web for Teacher Librarians: A Selection of Recommended Web Sites for TLs To Visit.

    ERIC Educational Resources Information Center

    1996

    Six papers review and recommend sites on the Web as resources for teacher librarians include: "Just Do It: A Guide to Getting Out There and Doing It Yourself" (Catherine Ryan); "A Selection of Recommended Web Sites for TLs To Visit" (Karen Bonanno); "A Selection of Recommended Web Sites for TLs To Visit" (Sandra Naude); "Internet Resources for the…

  14. Mass spectrometry and Web 2.0.

    PubMed

    Murray, Kermit K

    2007-10-01

    The term Web 2.0 is a convenient shorthand for a new era in the Internet in which users themselves are both generating and modifying existing web content. Several types of tools can be used. With social bookmarking, users assign a keyword to a web resource and the collection of the keyword 'tags' from multiple users form the classification of these resources. Blogs are a form of diary or news report published on the web in reverse chronological order and are a popular form of information sharing. A wiki is a website that can be edited using a web browser and can be used for collaborative creation of information on the site. This article is a tutorial that describes how these new ways of creating, modifying, and sharing information on the Web are being used for on-line mass spectrometry resources.

  15. Working the Web: An Empirical Model of Web Use.

    ERIC Educational Resources Information Center

    Choo, Chun Wei; Detlor, Brian; Turnbull, Don

    This paper investigates how knowledge workers utilize the Web to seek external information as part of their daily work. Thirty-four participants from seven companies were interviewed about their information needs and preferences. In addition, a custom-developed software application recorded each participant's Web behavior for a two week monitoring…

  16. Sensor web

    NASA Technical Reports Server (NTRS)

    Delin, Kevin A. (Inventor); Jackson, Shannon P. (Inventor)

    2011-01-01

    A Sensor Web formed of a number of different sensor pods. Each of the sensor pods include a clock which is synchronized with a master clock so that all of the sensor pods in the Web have a synchronized clock. The synchronization is carried out by first using a coarse synchronization which takes less power, and subsequently carrying out a fine synchronization to make a fine sync of all the pods on the Web. After the synchronization, the pods ping their neighbors to determine which pods are listening and responded, and then only listen during time slots corresponding to those pods which respond.

  17. Applications and Methods Utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for Bioinformatics Resource Discovery and Disparate Data and Service Integration

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Scientific data integration and computational service discovery are challenges for the bioinformatic community. This process is made more difficult by the separate and independent construction of biological databases, which makes the exchange of scientific data between information resources difficu...

  18. Web tools to monitor and debug DAQ hardware

    SciTech Connect

    Eugene Desavouret; Jerzy M. Nogiec

    2003-06-04

    A web-based toolkit to monitor and diagnose data acquisition hardware has been developed. It allows for remote testing, monitoring, and control of VxWorks data acquisition computers and associated instrumentation using the HTTP protocol and a web browser. This solution provides concurrent and platform independent access, supplementary to the standard single-user rlogin mechanism. The toolkit is based on a specialized web server, and allows remote access and execution of select system commands and tasks, execution of test procedures, and provides remote monitoring of computer system resources and connected hardware. Various DAQ components such as multiplexers, digital I/O boards, analog to digital converters, or current sources can be accessed and diagnosed remotely in a uniform and well-organized manner. Additionally, the toolkit application supports user authentication and is able to enforce specified access restrictions.

  19. The HADDOCK web server for data-driven biomolecular docking.

    PubMed

    de Vries, Sjoerd J; van Dijk, Marc; Bonvin, Alexandre M J J

    2010-05-01

    Computational docking is the prediction or modeling of the three-dimensional structure of a biomolecular complex, starting from the structures of the individual molecules in their free, unbound form. HADDOCK is a popular docking program that takes a data-driven approach to docking, with support for a wide range of experimental data. Here we present the HADDOCK web server protocol, facilitating the modeling of biomolecular complexes for a wide community. The main web interface is user-friendly, requiring only the structures of the individual components and a list of interacting residues as input. Additional web interfaces allow the more advanced user to exploit the full range of experimental data supported by HADDOCK and to customize the docking process. The HADDOCK server has access to the resources of a dedicated cluster and of the e-NMR GRID infrastructure. Therefore, a typical docking run takes only a few minutes to prepare and a few hours to complete.

  20. Cross-platform hypermedia examinations on the Web.

    PubMed Central

    Williams, T. W.; Giuse, N. B.; Huber, J. T.; Janco, R. L.

    1995-01-01

    The authors developed a multiple-choice medical testing system delivered using the World Wide Web. It evolved from an older, single-platform, locally-developed computer-based examination. The old system offered a number of advantages over traditional paper-based examinations, such as digital graphics and quicker, easier scoring. The new system builds on these advantages with its true cross-platform design and the addition of hypertext learning responses. The benefits of this system will increase as more medical educational resources migrate to the Web. Faculty and student feedback has been positive. The authors encourage other institutions to experiment with Web-based teaching materials, including examinations. PMID:8563333

  1. Data Sharing of Mechanical Design Formulas Using Semantic Web Technology

    NASA Astrophysics Data System (ADS)

    Zhou, Jun; Watanuki, Keiichi

    Speed and efficiency are necessary in the field of mechanical design. CAD/CAM/CAE technologies have advanced and attention has also been paid to increasing the efficiency of data sharing and agent processes in the web environment. In this paper, Semantic Web technology is used to enable the sharing of metadata. The metadata consists of design documents and design formulas, with additional semantic information inserted. Mathematical information is expressed by adding metadata into conventional mechanical design formulas using a Resource Description Framework (RDF). The design formulas are later written in MathML (Mathematical Markup Language) for the sake of data sharing. In this way, data sharing and advanced searching is made easy, because the relevant information is made machine readable in the web environment. The calculation of design formulas is made possible using a mathematical processing system, thus increasing the efficiency of mechanical design.

  2. MedlinePlus FAQ: Listing Your Web Site

    MedlinePlus

    ... medlineplus.gov/faq/criteria.html Question: How do Web sites get listed in MedlinePlus? To use the ... authoritative resources. MedlinePlus uses quality guidelines to evaluate Web sites. We try to ensure that the information ...

  3. Assessment of potential additions to conventional oil and gas resources of the world (outside the United States) from reserve growth, 2012

    USGS Publications Warehouse

    Klett, Timothy R.; Cook, Troy A.; Charpentier, Ronald R.; Tennyson, Marilyn E.; Attanasi, E.D.; Freeman, Phil A.; Ryder, Robert T.; Gautier, Donald L.; Verma, Mahendra K.; Le, Phuong A.; Schenk, Christopher J.

    2012-01-01

    The U.S. Geological Survey estimated volumes of technically recoverable, conventional petroleum resources resulting from reserve growth for discovered fields outside the United States that have reported in-place oil and gas volumes of 500 million barrels of oil equivalent or greater. The mean volumes were estimated at 665 billion barrels of crude oil, 1,429 trillion cubic feet of natural gas, and 16 billion barrels of natural gas liquids. These volumes constitute a significant portion of the world's oil and gas resources.

  4. A Spectrum of Interoperability: The Site for Science Prototype for the NSDL; Re-Inventing the Wheel? Standards, Interoperability and Digital Cultural Content; Preservation Risk Management for Web Resources: Virtual Remote Control in Cornell's Project Prism; Safekeeping: A Cooperative Approach to Building a Digital Preservation Resource; Object Persistence and Availability in Digital Libraries; Illinois Digital Cultural Heritage Community-Collaborative Interactions among Libraries, Museums and Elementary Schools.

    ERIC Educational Resources Information Center

    Arms, William Y.; Hillmann, Diane; Lagoze, Carl; Krafft, Dean; Marisa, Richard; Saylor, John; Terizzi, Carol; Van de Sompel, Herbert; Gill, Tony; Miller, Paul; Kenney, Anne R.; McGovern, Nancy Y.; Botticelli, Peter; Entlich, Richard; Payette, Sandra; Berthon, Hilary; Thomas, Susan; Webb, Colin; Nelson, Michael L.; Allen, B. Danette; Bennett, Nuala A.; Sandore, Beth; Pianfetti, Evangeline S.

    2002-01-01

    Discusses digital libraries, including interoperability, metadata, and international standards; Web resource preservation efforts at Cornell University; digital preservation at the National Library of Australia; object persistence and availability; collaboration among libraries, museums and elementary schools; Asian digital libraries; and a Web…

  5. Quaker Resources Online Index.

    ERIC Educational Resources Information Center

    Beke-Harrigan, Heidi

    The Quaker Resources Online Index is a World Wide Web-based index, including author, title, subject, and meeting indexes, that provides access to Quaker materials available on the Web. Given the current failings and shortcomings of search engines and automated key word searches, this index brings together information from a variety of sources and…

  6. Semantic SenseLab: implementing the vision of the Semantic Web in neuroscience

    PubMed Central

    Samwald, Matthias; Chen, Huajun; Ruttenberg, Alan; Lim, Ernest; Marenco, Luis; Miller, Perry; Shepherd, Gordon; Cheung, Kei-Hoi

    2011-01-01

    Summary Objective Integrative neuroscience research needs a scalable informatics framework that enables semantic integration of diverse types of neuroscience data. This paper describes the use of the Web Ontology Language (OWL) and other Semantic Web technologies for the representation and integration of molecular-level data provided by several of SenseLab suite of neuroscience databases. Methods Based on the original database structure, we semi-automatically translated the databases into OWL ontologies with manual addition of semantic enrichment. The SenseLab ontologies are extensively linked to other biomedical Semantic Web resources, including the Subcellular Anatomy Ontology, Brain Architecture Management System, the Gene Ontology, BIRNLex and UniProt. The SenseLab ontologies have also been mapped to the Basic Formal Ontology and Relation Ontology, which helps ease interoperability with many other existing and future biomedical ontologies for the Semantic Web. In addition, approaches to representing contradictory research statements are described. The SenseLab ontologies are designed for use on the Semantic Web that enables their integration into a growing collection of biomedical information resources. Conclusion We demonstrate that our approach can yield significant potential benefits and that the Semantic Web is rapidly becoming mature enough to realize its anticipated promises. The ontologies are available online at http://neuroweb.med.yale.edu/senselab/ PMID:20006477

  7. Teaching Web Security Using Portable Virtual Labs

    ERIC Educational Resources Information Center

    Chen, Li-Chiou; Tao, Lixin

    2012-01-01

    We have developed a tool called Secure WEb dEvelopment Teaching (SWEET) to introduce security concepts and practices for web application development. This tool provides introductory tutorials, teaching modules utilizing virtualized hands-on exercises, and project ideas in web application security. In addition, the tool provides pre-configured…

  8. Personalized Spiders for Web Search and Analysis.

    ERIC Educational Resources Information Center

    Chau, Michael; Zeng, Daniel; Chen, Hsinchun

    Searching for useful information on the World Wide Web has become increasingly difficult. While Internet search engines have been helping people to search on the Web, low recall rate and outdated indexes have become more and more problematic as the Web grows. In addition, search tools usually present to the user only a list of search results,…

  9. Utilizing Social Bookmarking Tag Space for Web Content Discovery: A Social Network Analysis Approach

    ERIC Educational Resources Information Center

    Wei, Wei

    2010-01-01

    Social bookmarking has gained popularity since the advent of Web 2.0. Keywords known as tags are created to annotate web content, and the resulting tag space composed of the tags, the resources, and the users arises as a new platform for web content discovery. Useful and interesting web resources can be located through searching and browsing based…

  10. Making web annotations persistent over time

    SciTech Connect

    Sanderson, Robert; Van De Sompel, Herbert

    2010-01-01

    As Digital Libraries (DL) become more aligned with the web architecture, their functional components need to be fundamentally rethought in terms of URIs and HTTP. Annotation, a core scholarly activity enabled by many DL solutions, exhibits a clearly unacceptable characteristic when existing models are applied to the web: due to the representations of web resources changing over time, an annotation made about a web resource today may no longer be relevant to the representation that is served from that same resource tomorrow. We assume the existence of archived versions of resources, and combine the temporal features of the emerging Open Annotation data model with the capability offered by the Memento framework that allows seamless navigation from the URI of a resource to archived versions of that resource, and arrive at a solution that provides guarantees regarding the persistence of web annotations over time. More specifically, we provide theoretical solutions and proof-of-concept experimental evaluations for two problems: reconstructing an existing annotation so that the correct archived version is displayed for all resources involved in the annotation, and retrieving all annotations that involve a given archived version of a web resource.

  11. Oh, What a Tangled Web We've Woven! Helping Students Evaluate Sources.

    ERIC Educational Resources Information Center

    Gardner, Susan A.; Benham, Hiltraut H.; Newell, Bridget M.

    1999-01-01

    Discusses the problem of sources in student research; evaluating web resources for authority and accuracy; and evaluating objectivity of web sources (their currency and coverage). Notes helpful web sites about evaluating sources. Describes some web evaluation exercises for students, and outlines three assignments on evaluating web sources. (SR)

  12. Assessment of potential additions to conventional oil and gas resources in discovered fields of the United States from reserve growth, 2012

    USGS Publications Warehouse

    ,

    2012-01-01

    The U.S. Geological Survey estimated volumes of technically recoverable, conventional petroleum resources that have the potential to be added to reserves from reserve growth in 70 discovered oil and gas accumulations of the United States, excluding Federal offshore areas. The mean estimated volumes are 32 billion barrels of crude oil, 291 trillion cubic feet of natural gas, and 10 billion barrels of natural gas liquids.

  13. Library resources on the Internet

    NASA Astrophysics Data System (ADS)

    Buchanan, Nancy L.

    1995-07-01

    Library resources are prevalent on the Internet. Library catalogs, electronic books, electronic periodicals, periodical indexes, reference sources, and U.S. Government documents are available by telnet, Gopher, World Wide Web, and FTP. Comparatively few copyrighted library resources are available freely on the Internet. Internet implementations of library resources can add useful features, such as full-text searching. There are discussion lists, Gophers, and World Wide Web pages to help users keep up with new resources and changes to existing ones. The future will bring more library resources, more types of library resources, and more integrated implementations of such resources to the Internet.

  14. An Ontology of Quality Initiatives and a Model for Decentralized, Collaborative Quality Management on the (Semantic) World Wide Web

    PubMed Central

    2001-01-01

    This editorial provides a model of how quality initiatives concerned with health information on the World Wide Web may in the future interact with each other. This vision fits into the evolving "Semantic Web" architecture - ie, the prospective that the World Wide Web may evolve from a mess of unstructured, human-readable information sources into a global knowledge base with an additional layer providing richer and more meaningful relationships between resources. One first prerequisite for forming such a "Semantic Web" or "web of trust" among the players active in quality management of health information is that these initiatives make statements about themselves and about each other in a machine-processable language. I present a concrete model on how this collaboration could look, and provide some recommendations on what the role of the World Health Organization (WHO) and other policy makers in this framework could be. PMID:11772549

  15. An ontology of quality initiatives and a model for decentralized, collaborative quality management on the (semantic) World-Wide-Web.

    PubMed

    Eysenbach, G

    2001-01-01

    This editorial provides a model of how quality initiatives concerned with health information on the World Wide Web may in the future interact with each other. This vision fits into the evolving "Semantic Web" architecture - ie, the prospective that the World Wide Web may evolve from a mess of unstructured, human-readable information sources into a global knowledge base with an additional layer providing richer and more meaningful relationships between resources. One first prerequisite for forming such a "Semantic Web" or "web of trust" among the players active in quality management of health information is that these initiatives make statements about themselves and about each other in a machine-processable language. I present a concrete model on how this collaboration could look, and provide some recommendations on what the role of the World Health Organization (WHO) and other policy makers in this framework could be.

  16. Importance of the spatial data and the sensor web in the ubiquitous computing area

    NASA Astrophysics Data System (ADS)

    Akçit, Nuhcan; Tomur, Emrah; Karslıoǧlu, Mahmut O.

    2014-08-01

    Spatial data has become a critical issue in recent years. In the past years, nearly more than three quarters of databases, were related directly or indirectly to locations referring to physical features, which constitute the relevant aspects. Spatial data is necessary to identify or calculate the relationships between spatial objects when using spatial operators in programs or portals. Originally, calculations were conducted using Geographic Information System (GIS) programs on local computers. Subsequently, through the Internet, they formed a geospatial web, which is integrated into a discoverable collection of geographically related web standards and key features, and constitutes a global network of geospatial data that employs the World Wide Web to process textual data. In addition, the geospatial web is used to gather spatial data producers, resources, and users. Standards also constitute a critical dimension in further globalizing the idea of the geospatial web. The sensor web is an example of the real time service that the geospatial web can provide. Sensors around the world collect numerous types of data. The sensor web is a type of sensor network that is used for visualizing, calculating, and analyzing collected sensor data. Today, people use smart devices and systems more frequently because of the evolution of technology and have more than one mobile device. The considerable number of sensors and different types of data that are positioned around the world have driven the production of interoperable and platform-independent sensor web portals. The focus of such production has been on further developing the idea of an interoperable and interdependent sensor web of all devices that share and collect information. The other pivotal idea consists of encouraging people to use and send data voluntarily for numerous purposes with the some level of credibility. The principal goal is to connect mobile and non-mobile device in the sensor web platform together to

  17. Dynamics of Simple Food Webs.

    PubMed

    Gedeon, Tomas; Murphy, Patrick

    2015-10-01

    We consider a simple food web with commensal relationship, where organisms utilize both external resources and resources produced by other organisms. We show that in such a community with no competition, there is at most one possible equilibrium for each fixed set of surviving species, and develop a natural condition that determines which species survive based on available resource. Our main result shows that among all possible communities described by equilibria, the one which is stable has the largest number of surviving species and largest combined biomass and hence maximizes utilization of available resources.

  18. Ontology-Based Administration of Web Directories

    NASA Astrophysics Data System (ADS)

    Horvat, Marko; Gledec, Gordan; Bogunović, Nikola

    Administration of a Web directory and maintenance of its content and the associated structure is a delicate and labor intensive task performed exclusively by human domain experts. Subsequently there is an imminent risk of a directory structures becoming unbalanced, uneven and difficult to use to all except for a few users proficient with the particular Web directory and its domain. These problems emphasize the need to establish two important issues: i) generic and objective measures of Web directories structure quality, and ii) mechanism for fully automated development of a Web directory's structure. In this paper we demonstrate how to formally and fully integrate Web directories with the Semantic Web vision. We propose a set of criteria for evaluation of a Web directory's structure quality. Some criterion functions are based on heuristics while others require the application of ontologies. We also suggest an ontology-based algorithm for construction of Web directories. By using ontologies to describe the semantics of Web resources and Web directories' categories it is possible to define algorithms that can build or rearrange the structure of a Web directory. Assessment procedures can provide feedback and help steer the ontology-based construction process. The issues raised in the article can be equally applied to new and existing Web directories.

  19. C3: A Collaborative Web Framework for NASA Earth Exchange

    NASA Astrophysics Data System (ADS)

    Foughty, E.; Fattarsi, C.; Hardoyo, C.; Kluck, D.; Wang, L.; Matthews, B.; Das, K.; Srivastava, A.; Votava, P.; Nemani, R. R.

    2010-12-01

    The NASA Earth Exchange (NEX) is a new collaboration platform for the Earth science community that provides a mechanism for scientific collaboration and knowledge sharing. NEX combines NASA advanced supercomputing resources, Earth system modeling, workflow management, NASA remote sensing data archives, and a collaborative communication platform to deliver a complete work environment in which users can explore and analyze large datasets, run modeling codes, collaborate on new or existing projects, and quickly share results among the Earth science communities. NEX is designed primarily for use by the NASA Earth science community to address scientific grand challenges. The NEX web portal component provides an on-line collaborative environment for sharing of Eearth science models, data, analysis tools and scientific results by researchers. In addition, the NEX portal also serves as a knowledge network that allows researchers to connect and collaborate based on the research they are involved in, specific geographic area of interest, field of study, etc. Features of the NEX web portal include: Member profiles, resource sharing (data sets, algorithms, models, publications), communication tools (commenting, messaging, social tagging), project tools (wikis, blogs) and more. The NEX web portal is built on the proven technologies and policies of DASHlink.arc.nasa.gov, (one of NASA's first science social media websites). The core component of the web portal is a C3 framework, which was built using Django and which is being deployed as a common framework for a number of collaborative sites throughout NASA.

  20. Child Care Mealtime and Active Play Partnerships (Child Care MAPP): evaluation of a training resource Web site for enhancing nutrition education communication.

    PubMed

    Ramsay, Samantha A; Armstrong Shultz, Jill; Johnson, Susan L; Branen, Laurel J; Fletcher, Janice W; Anderson, Erik

    2013-01-01

    The communication component of the Child Care MAPP Web site was designed according to an established theoretical base, and was critically reviewed. The communication materials were targeted for use by trainers who educate child care providers, and may be incorporated into higher education curricula to guide nutrition educators who will be working in child nutrition and child feeding programs. Evaluation of the impact of the communication materials on a group of trainers demonstrated a significant increase in participant confidence to communicate about nutrition. In particular, the child- and adult-centered phrases developed as a novel and developmentally appropriate approach to nutrition education were evaluated by respondents as useful, and were found to increase confidence to communicate with children. Future research should further examine the use of child-centered and adult-centered nutrition phrases in nutrition education and higher education, to determine whether the way in which adults talk with children improves children’s knowledge about nutrition, and whether use of the phrases can positively affect children’s nutrition behaviors.

  1. The dynamics of assembling food webs.

    PubMed

    Fahimipour, Ashkaan K; Hein, Andrew M

    2014-05-01

    Community assembly is central to ecology, yet ecologists have amassed little quantitative information about how food webs assemble. Theory holds that colonisation rate is a primary driver of community assembly. We present new data from a mesocosm experiment to test the hypothesis that colonisation rate also determines the assembly dynamics of food webs. By manipulating colonisation rate and measuring webs through time, we show how colonisation rate governs structural changes during assembly. Webs experiencing different colonisation rates had stable topologies despite significant species turnover, suggesting that some features of network architecture emerge early and change little through assembly. But webs experiencing low colonisation rates showed less variation in the magnitudes of trophic fluxes, and were less likely to develop coupled fast and slow resource channels--a common feature of published webs. Our results reveal that food web structure develops according to repeatable trajectories that are strongly influenced by colonisation rate.

  2. THE NSF National Science, Technology, Engineering, and Mathematics Education Digital Library (NSDL) Program; Software for Building a Full-Featured Discipline-Based Web Portal; A Metadata Framework Developed at the Tsinghua University Library To Aid in the Preservation of Digital Resources; A Scalable Architecture for Harvest-Based Digital Libraries; The Design and Evaluation of Interactivities in a Digital Library.

    ERIC Educational Resources Information Center

    Zia, Lee L.; Almasy, Edward; Sleasman, David; Bower, Rachael; Niu, Jingfang; Liu, Xiaoming; Maly, Kurt; Zubair, Mohammad; Nelson, Michael L.; Brody, Tim; Harnard, Stevan; Carr, Les; Budhu, Muniram; Coleman, Anita

    2002-01-01

    Includes five articles that discuss digital library programs related to the National Science Foundation; software for building Web portals; metadata developed at Tsinghua University Library (China) for preserving digital resources; the Open Archives Initiative for metadata and the need for a common infrastructure; and interactivity in a digital…

  3. Keeping Dublin Core Simple: Cross-Domain Discovery or Resource Description?; First Steps in an Information Commerce Economy: Digital Rights Management in the Emerging E-Book Environment; Interoperability: Digital Rights Management and the Emerging EBook Environment; Searching the Deep Web: Direct Query Engine Applications at the Department of Energy.

    ERIC Educational Resources Information Center

    Lagoze, Carl; Neylon, Eamonn; Mooney, Stephen; Warnick, Walter L.; Scott, R. L.; Spence, Karen J.; Johnson, Lorrie A.; Allen, Valerie S.; Lederman, Abe

    2001-01-01

    Includes four articles that discuss Dublin Core metadata, digital rights management and electronic books, including interoperability; and directed query engines, a type of search engine designed to access resources on the deep Web that is being used at the Department of Energy. (LRW)

  4. News Expedition: Teachers go on extreme journey Summer School: Summer school inspires student Conference: Bristol plans science teaching festival Teacher Support: Make the most of your SPN support Conference: Schools can use latest physics Web Resource: Datamouse online project goes live Forthcoming Events

    NASA Astrophysics Data System (ADS)

    2010-01-01

    Expedition: Teachers go on extreme journey Summer School: Summer school inspires student Conference: Bristol plans science teaching festival Teacher Support: Make the most of your SPN support Conference: Schools can use latest physics Web Resource: Datamouse online project goes live Forthcoming Events

  5. Web Sitings.

    ERIC Educational Resources Information Center

    Lo, Erika

    2001-01-01

    Presents seven mathematics games, located on the World Wide Web, for elementary students, including: Absurd Math: Pre-Algebra from Another Dimension; The Little Animals Activity Centre; MathDork Game Room (classic video games focusing on algebra); Lemonade Stand (students practice math and business skills); Math Cats (teaches the artistic beauty…

  6. Quantum computational webs

    SciTech Connect

    Gross, D.; Eisert, J.

    2010-10-15

    We discuss the notion of quantum computational webs: These are quantum states universal for measurement-based computation, which can be built up from a collection of simple primitives. The primitive elements--reminiscent of building blocks in a construction kit--are (i) one-dimensional states (computational quantum wires) with the power to process one logical qubit and (ii) suitable couplings, which connect the wires to a computationally universal web. All elements are preparable by nearest-neighbor interactions in a single pass, of the kind accessible in a number of physical architectures. We provide a complete classification of qubit wires, a physically well-motivated class of universal resources that can be fully understood. Finally, we sketch possible realizations in superlattices and explore the power of coupling mechanisms based on Ising or exchange interactions.

  7. Infectious disease agents mediate interaction in food webs and ecosystems.

    PubMed

    Selakovic, Sanja; de Ruiter, Peter C; Heesterbeek, Hans

    2014-02-22

    Infectious agents are part of food webs and ecosystems via the relationship with their host species that, in turn, interact with both hosts and non-hosts. Through these interactions, infectious agents influence food webs in terms of structure, functioning and stability. The present literature shows a broad range of impacts of infectious agents on food webs, and by cataloguing that range, we worked towards defining the various mechanisms and their specific effects. To explore the impact, a direct approach is to study changes in food-web properties with infectious agents as separate species in the web, acting as additional nodes, with links to their host species. An indirect approach concentrates not on adding new nodes and links, but on the ways that infectious agents affect the existing links across host and non-host nodes, by influencing the 'quality' of consumer-resource interaction as it depends on the epidemiological state host involved. Both approaches are natural from an ecological point of view, but the indirect approach may connect more straightforwardly to commonly used tools in infectious disease dynamics.

  8. Infectious disease agents mediate interaction in food webs and ecosystems

    PubMed Central

    Selakovic, Sanja; de Ruiter, Peter C.; Heesterbeek, Hans

    2014-01-01

    Infectious agents are part of food webs and ecosystems via the relationship with their host species that, in turn, interact with both hosts and non-hosts. Through these interactions, infectious agents influence food webs in terms of structure, functioning and stability. The present literature shows a broad range of impacts of infectious agents on food webs, and by cataloguing that range, we worked towards defining the various mechanisms and their specific effects. To explore the impact, a direct approach is to study changes in food-web properties with infectious agents as separate species in the web, acting as additional nodes, with links to their host species. An indirect approach concentrates not on adding new nodes and links, but on the ways that infectious agents affect the existing links across host and non-host nodes, by influencing the ‘quality’ of consumer–resource interaction as it depends on the epidemiological state host involved. Both approaches are natural from an ecological point of view, but the indirect approach may connect more straightforwardly to commonly used tools in infectious disease dynamics. PMID:24403336

  9. Social Networking on the Semantic Web

    ERIC Educational Resources Information Center

    Finin, Tim; Ding, Li; Zhou, Lina; Joshi, Anupam

    2005-01-01

    Purpose: Aims to investigate the way that the semantic web is being used to represent and process social network information. Design/methodology/approach: The Swoogle semantic web search engine was used to construct several large data sets of Resource Description Framework (RDF) documents with social network information that were encoded using the…

  10. Getting To Know the "Invisible Web."

    ERIC Educational Resources Information Center

    Smith, C. Brian

    2001-01-01

    Discusses the portions of the World Wide Web that cannot be accessed via directories or search engines, explains why they can't be accessed, and offers suggestions for reference librarians to find these sites. Lists helpful resources and gives examples of invisible Web sites which are often databases. (LRW)

  11. Web-Based Lessons from Frontliners.

    ERIC Educational Resources Information Center

    Joseph, Linda C.

    1998-01-01

    Describes Web-site lessons and resources on the role of women in history, games, circulatory system, the study of color for emergent readers, ePals classroom exchange for French students, nutrition and the food pyramid for elementary and secondary students, and classroom management for teachers. Provides URLs for related Web sites. (PEN)

  12. Teaching and Learning: Web Engagement--Are We at the Next Level?

    ERIC Educational Resources Information Center

    Lindeman, Cheryl A.

    2011-01-01

    The challenge for those who are working with talented STEM students is to engage them with like-minded science leaders through direct contact and by using meaningful web resources. The author discovered new web resources by attending a workshop and by reading an alumni magazine. She introduced both web resources to her senior classes and…

  13. ELM 2016--data update and new functionality of the eukaryotic linear motif resource.

    PubMed

    Dinkel, Holger; Van Roey, Kim; Michael, Sushama; Kumar, Manjeet; Uyar, Bora; Altenberg, Brigitte; Milchevskaya, Vladislava; Schneider, Melanie; Kühn, Helen; Behrendt, Annika; Dahl, Sophie Luise; Damerell, Victoria; Diebel, Sandra; Kalman, Sara; Klein, Steffen; Knudsen, Arne C; Mäder, Christina; Merrill, Sabina; Staudt, Angelina; Thiel, Vera; Welti, Lukas; Davey, Norman E; Diella, Francesca; Gibson, Toby J

    2016-01-01

    The Eukaryotic Linear Motif (ELM) resource (http://elm.eu.org) is a manually curated database of short linear motifs (SLiMs). In this update, we present the latest additions to this resource, along with more improvements to the web interface. ELM 2016 contains more than 240 different motif classes with over 2700 experimentally validated instances, manually curated from more than 2400 scientific publications. In addition, more data have been made available as individually searchable pages and are downloadable in various formats.

  14. Teaching methotrexate self-injection with a web-based video maintains patient care while reducing healthcare resources: a pilot study.

    PubMed

    Katz, Steven J; Leung, Sylvia

    2015-01-01

    The aim of the study was to compare standard nurse-led methotrexate self-injection patient education to a web-based methotrexate self-injection education video in conjunction with standard teaching on patient self-confidence for self-injection, as well as patient satisfaction, patient knowledge and teaching time. Consecutive rheumatology patients seen for methotrexate self-injection education were enrolled. Prior to education, patient self-confidence for self-injection, age, gender and education were recorded. Patients were randomized 1:1 to standard teaching or the intervention: a 12-min methotrexate self-injection education video followed by further in-person nurse education. Patients recorded their post-education confidence for self-injection, satisfaction with the teaching process and answered four specific questions testing knowledge on methotrexate self-injection. The time spent providing direct education to the patient was recorded. Twenty-nine patients participated in this study: 15 had standard (C) teaching and 14 were in the intervention group (I). Average age, gender and education level were similar in both groups. Both groups were satisfied with the quality of teaching. There was no difference in pre-confidence (C = 5.5/10 vs. I = 4.7/10, p = 0.44) or post-confidence (C = 8.8, I = 8.8, p = 0.93) between the groups. There was a trend toward improved patient knowledge in the video group versus the standard group (C = 4.7/6, I = 5.5/6, p = 0.15). Nurse teaching time was less in the video group (C = 60 min, I = 44 min, p = 0.012), with men requiring longer education time than women across all groups. An education video may be a good supplement to standard in-person nurse teaching for methotrexate self-injection. It equals the standard teaching practise with regard to patient satisfaction, confidence and knowledge while decreasing teaching time by 25 %.

  15. The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

    PubMed Central

    2011-01-01

    Background The complexity and inter-related nature of biological data poses a difficult challenge for data and tool integration. There has been a proliferation of interoperability standards and projects over the past decade, none of which has been widely adopted by the bioinformatics community. Recent attempts have focused on the use of semantics to assist integration, and Semantic Web technologies are being welcomed by this community. Description SADI - Semantic Automated Discovery and Integration - is a lightweight set of fully standards-compliant Semantic Web service design patterns that simplify the publication of services of the type commonly found in bioinformatics and other scientific domains. Using Semantic Web technologies at every level of the Web services "stack", SADI services consume and produce instances of OWL Classes following a small number of very straightforward best-practices. In addition, we provide codebases that support these best-practices, and plug-in tools to popular developer and client software that dramatically simplify deployment of services by providers, and the discovery and utilization of those services by their consumers. Conclusions SADI Services are fully compliant with, and utilize only foundational Web standards; are simple to create and maintain for service providers; and can be discovered and utilized in a very intuitive way by biologist end-users. In addition, the SADI design patterns significantly improve the ability of software to automatically discover appropriate services based on user-needs, and automatically chain these into complex analytical workflows. We show that, when resources are exposed through SADI, data compliant with a given ontological model can be automatically gathered, or generated, from these distributed, non-coordinating resources - a behaviour we have not observed in any other Semantic system. Finally, we show that, using SADI, data dynamically generated from Web services can be explored in a manner

  16. S.T.A.R.T.T. plus: addition of prehospital personnel to a national multidisciplinary crisis resource management trauma team training course

    PubMed Central

    Gillman, Lawrence M.; Martin, Doug; Engels, Paul T.; Brindley, Peter; Widder, Sandy; French, Cheryl

    2016-01-01

    Summary The Simulated Trauma and Resuscitation Team Training (S.T.A.R.T.T.) course is a unique multidisciplinary trauma team training course deliberately designed to address the common crisis resource management (CRM) skills of trauma team members. Moreover, the curriculum has been updated to also target the specific learning needs of individual participating professionals: physicians, nurses and respiratory therapists. This commentary outlines further modifications to the course curriculum in order to address the needs of a relatively undertargeted group: prehospital personnel (i.e., emergency medical services). Maintenance of high participant satisfaction, regardless of profession, suggests that the S.T.A.R.T.T. course can be readily modified to incorporate prehospital personnel without losing its utility or popularity. PMID:26574706

  17. Web Reference: A Virtual Reality.

    ERIC Educational Resources Information Center

    Foster, Janet

    1999-01-01

    Presents ideas and strategies to enhance digital reference services available via the Internet in public libraries. Describes print publications which include Web reference columns; subject guides, both print and online; and the resources of the Internet Public Library and other virtual reference desks. (LRW)

  18. Perceptions of Business Students' Feature Requirements in Educational Web Sites

    ERIC Educational Resources Information Center

    Hazari, Sunil; Johnson, Barbara

    2007-01-01

    There is paucity of original research that explains phenomena related to content organization and site design of educational Web sites. Educational Web sites are often used to provide Web-based instruction, which itself is a relatively recent phenomenon for business schools, and additional research is needed in this area. Educational Web sites are…

  19. Tools, Information, and Assistance: Resources for States (Presentation)

    SciTech Connect

    Brennan, A. H.

    2007-07-16

    This presentation covers resources available through the Clean Cities Program. Resources include a Web site, numerous publications, an alternative fuel data base, and other information products and assistance.

  20. The Informed Guide to Climate Data Sets, a web-based community resource to facilitate the discussion and selection of appropriate datasets for Earth System Model Evaluation

    NASA Astrophysics Data System (ADS)

    Schneider, D. P.; Deser, C.; Shea, D.

    2011-12-01

    When comparing CMIP5 model output to observations, researchers will be faced with a bewildering array of choices. Considering just a few of the different products available for commonly analyzed climate variables, for reanalysis there are at least half a dozen different products, for sea ice concentrations there are NASA Team or Bootstrap versions, for sea surface temperatures there are HadISST or NOAA ERSST data, and for precipitation there are CMAP and GPCP data sets. While many data centers exist to host data, there is little centralized guidance on discovering and choosing appropriate climate data sets for the task at hand. Common strategies like googling "sea ice data" yield results that at best are substantially incomplete. Anecdotal evidence suggests that individual researchers often base their selections on non-scientific criteria-either the data are in a convenient format that the user is comfortable with, a co-worker has the data handy on her local server, or a mentor discourages or recommends the use of particular products for legacy or other non-objective reasons. Sometimes these casual recommendations are sound, but they are not accessible to the broader community or adequately captured in the peer-reviewed literature. These issues are addressed by the establishment of a web-based Informed Guide with the specific goals to (1) Evaluate and assess selected climate datasets and (2) Provide expert user guidance on the strengths and limitations of selected climate datasets. The Informed Guide is based at NCAR's Climate and Global Dynamics Division, Climate Analysis Section and is funded by NSF. The Informed Guide is an interactive website that welcomes participation from the broad scientific community and is scalable to grow as participation increases. In this presentation, we will present the website, discuss how you can participate, and address the broader issues about its role in the evaluation of CMIP5 and other climate model simulations. A link to the

  1. Using Maps in Web Analytics to Evaluate the Impact of Web-Based Extension Programs

    ERIC Educational Resources Information Center

    Veregin, Howard

    2015-01-01

    Maps can be a valuable addition to the Web analytics toolbox for Extension programs that use the Web to disseminate information. Extension professionals use Web analytics tools to evaluate program impacts. Maps add a unique perspective through visualization and analysis of geographic patterns and their relationships to other variables. Maps can…

  2. Factors Affecting the Successful Use of Web Sites

    ERIC Educational Resources Information Center

    Matheus, Anne

    2009-01-01

    Every second of every minute of every day, many people search the World Wide Web for information. People are less likely to use hard copy telephone books, encyclopedias, libraries, or other traditional methods of research. They access these traditional resources through web based portals. People use the web to find restaurants, go on vacation, to…

  3. The Weakest Link: Is It Your Web Site?

    ERIC Educational Resources Information Center

    Bell, Lori; Peters, Tom

    2006-01-01

    In little more than a decade, Web sites have become integral to many digital library collections and services. Even if a Web site is not the destination point for an information resource, library users often interact with Web sites in the process of searching for and discovering online collections and services. If a user is looking to find and…

  4. Baby Steps: Starting Out on the World Wide Web.

    ERIC Educational Resources Information Center

    Simpson, Carol; McElmeel, Sharron L.

    1997-01-01

    While the Internet is the physical medium used to transport data, the World Wide Web is the collection of protocols and standards used to access the information. This article provides a basic explanation of what the Web is and describes common browser commands. Discusses graphic Web browsers; universal resource locators (URLs); file, message,…

  5. Learning To Use the World Wide Web. Academic Edition.

    ERIC Educational Resources Information Center

    Ackerman, Ernest

    This book emphasizes how to use Netscape Navigator to access the World Wide Web and associated resources and services in a step-by-step, organized manner. Chapters include -- Chapter 1: Introduction to the World Wide Web and the Internet; Chapter 2: Using a Web Browser; Chapter 3: The Basics of Electronic Mail and Using Netscape Email; Chapter 4:…

  6. Using EMBL-EBI services via Web interface and programmatically via Web Services

    PubMed Central

    Lopez, Rodrigo; Cowley, Andrew; Li, Weizhong; McWilliam, Hamish

    2015-01-01

    The European Bioinformatics Institute (EMBL-EBI) provides access to a wide range of databases and analysis tools that are of key importance in bioinformatics. As well as providing Web interfaces to these resources, Web Services are available using SOAP and REST protocols that enable programmatic access to our resources and allow their integration into other applications and analytical workflows. This unit describes the various options available to a typical researcher or bioinformatician who wishes to use our resources via Web interface or programmatically via a range of programming languages. PMID:25501941

  7. Inspiring the Next Generation of Scientists: Building on 52 Years of Tradition in Diatom Research with Open-Source, Web-Based Collaboration Tools and Online Resources in a Field Course for High School Students

    NASA Astrophysics Data System (ADS)

    Howard, K. L.; Lee, S. S.

    2015-12-01

    Open-source, web-based forums and online resources can be used to develop a collaborative, active-learning approach for engaging and training students in the scientific process. We used the Diatoms of the United States website as an online resource for diatom taxonomy and developed a Google+ class community to serve as a platform for high school students to learn about research in diatom taxonomy, community ecology and diatom applications to the earth sciences. Ecology and Systematics of Diatoms is a field course that has been taught at the undergraduate and graduate levels at the Iowa Lakeside Lab field station for 52 years, beginning with the Diatom Clinic in 1963. Freshwater diatom education at Lakeside Lab has since evolved into a foundational training course attracting budding diatomists from all over the world, and has grown to include a week-long course for high school students. Successful since 2012, the high school course is now offered for college credit (University of Iowa), and covers methods of diatom specimen collection and preparation, microscopy, identification of diatom genera, diatom ecology, applications of diatom research, and an introduction to data analysis incorporating multivariate statistics (ordination) using the R statistical program, as well as primary scientific literature. During the 2015 course, students contributed to a Google+ class community where they posted images, data, and questions. The web-based platform allowed students to easily share information and to give and receive feedback from both peers and instructors. Students collaborated via the Google+ community and used the Diatoms of the United States website to develop a taxonomic reference for a field-based group research project, simulating how an actual diatom research program would develop a region or project-specific flora harmonized across analysts. Students investigated the taxonomy and ecology of diatom epiphytes on the green alga Cladophora from the littoral zone of

  8. Web Based Personal Nutrition Management Tool

    NASA Astrophysics Data System (ADS)

    Bozkurt, Selen; Zayim, Neşe; Gülkesen, Kemal Hakan; Samur, Mehmet Kemal

    Internet is being used increasingly as a resource for accessing health-related information because of its several advantages. Therefore, Internet tailoring becomes quite preferable in health education and personal health management recently. Today, there are many web based health programs de-signed for individuals. Among these studies nutrition and weight management is popular because, obesity has become a heavy burden for populations worldwide. In this study, we designed a web based personal nutrition education and management tool, The Nutrition Web Portal, in order to enhance patients’ nutrition knowledge, and provide behavioral change against obesity. The present paper reports analysis, design and development processes of The Nutrition Web Portal.

  9. 32 CFR 701.102 - Online resources.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 32 National Defense 5 2014-07-01 2014-07-01 false Online resources. 701.102 Section 701.102... THE NAVY DOCUMENTS AFFECTING THE PUBLIC DON Privacy Program § 701.102 Online resources. (a) Navy PA... Web site (http://www.defenselink.mil/privacy). This Web site is an excellent resource that contains...

  10. 32 CFR 701.102 - Online resources.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 32 National Defense 5 2013-07-01 2013-07-01 false Online resources. 701.102 Section 701.102... THE NAVY DOCUMENTS AFFECTING THE PUBLIC DON Privacy Program § 701.102 Online resources. (a) Navy PA... Web site (http://www.defenselink.mil/privacy). This Web site is an excellent resource that contains...

  11. 32 CFR 701.102 - Online resources.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 32 National Defense 5 2012-07-01 2012-07-01 false Online resources. 701.102 Section 701.102... THE NAVY DOCUMENTS AFFECTING THE PUBLIC DON Privacy Program § 701.102 Online resources. (a) Navy PA... Web site (http://www.defenselink.mil/privacy). This Web site is an excellent resource that contains...

  12. 32 CFR 701.102 - Online resources.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 32 National Defense 5 2011-07-01 2011-07-01 false Online resources. 701.102 Section 701.102... THE NAVY DOCUMENTS AFFECTING THE PUBLIC DON Privacy Program § 701.102 Online resources. (a) Navy PA... Web site (http://www.defenselink.mil/privacy). This Web site is an excellent resource that contains...

  13. 32 CFR 701.102 - Online resources.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 32 National Defense 5 2010-07-01 2010-07-01 false Online resources. 701.102 Section 701.102... THE NAVY DOCUMENTS AFFECTING THE PUBLIC DON Privacy Program § 701.102 Online resources. (a) Navy PA... Web site (http://www.defenselink.mil/privacy). This Web site is an excellent resource that contains...

  14. WebViz:A Web-based Collaborative Interactive Visualization System for large-Scale Data Sets

    NASA Astrophysics Data System (ADS)

    Yuen, D. A.; McArthur, E.; Weiss, R. M.; Zhou, J.; Yao, B.

    2010-12-01

    WebViz is a web-based application designed to conduct collaborative, interactive visualizations of large data sets for multiple users, allowing researchers situated all over the world to utilize the visualization services offered by the University of Minnesota’s Laboratory for Computational Sciences and Engineering (LCSE). This ongoing project has been built upon over the last 3 1/2 years .The motivation behind WebViz lies primarily with the need to parse through an increasing amount of data produced by the scientific community as a result of larger and faster multicore and massively parallel computers coming to the market, including the use of general purpose GPU computing. WebViz allows these large data sets to be visualized online by anyone with an account. The application allows users to save time and resources by visualizing data ‘on the fly’, wherever he or she may be located. By leveraging AJAX via the Google Web Toolkit (http://code.google.com/webtoolkit/), we are able to provide users with a remote, web portal to LCSE's (http://www.lcse.umn.edu) large-scale interactive visualization system already in place at the University of Minnesota. LCSE’s custom hierarchical volume rendering software provides high resolution visualizations on the order of 15 million pixels and has been employed for visualizing data primarily from simulations in astrophysics to geophysical fluid dynamics . In the current version of WebViz, we have implemented a highly extensible back-end framework built around HTTP "server push" technology. The web application is accessible via a variety of devices including netbooks, iPhones, and other web and javascript-enabled cell phones. Features in the current version include the ability for users to (1) securely login (2) launch multiple visualizations (3) conduct collaborative visualization sessions (4) delegate control aspects of a visualization to others and (5) engage in collaborative chats with other users within the user interface

  15. WebQuests: a new instructional strategy for nursing education.

    PubMed

    Lahaie, Ulysses

    2007-01-01

    A WebQuest is a model or framework for designing effective Web-based instructional strategies featuring inquiry-oriented activities. It is an innovative approach to learning that is enhanced by the use of evolving instructional technology. WebQuests have invigorated the primary school (grades K through 12) educational sector around the globe, yet there is sparse evidence in the literature of WebQuests at the college and university levels. WebQuests are congruent with pedagogical approaches and cognitive activities commonly used in nursing education. They are simple to construct using a step-by-step approach, and nurse educators will find many related resources on the Internet to help them get started. Included in this article are a discussion of the critical attributes and main features of WebQuests, construction tips, recommended Web sites featuring essential resources, a discussion of WebQuest-related issues identified in the literature, and some suggestions for further research.

  16. Reviews Book: Marie Curie and Her Daughters Resource: Cumulus Equipment: Alpha Particle Scattering Apparatus Equipment: 3D Magnetic Tube Equipment: National Grid Transmission Model Book: Einstein's Physics Equipment: Barton's Pendulums Equipment: Weather Station Web Watch

    NASA Astrophysics Data System (ADS)

    2013-09-01

    WE RECOMMEND Marie Curie and Her Daughters An insightful study of a resilient and ingenious family and their achievements Cumulus Simple to install and operate and with obvious teaching applications, this weather station 'donationware' is as easy to recommend as it is to use Alpha Particle Scattering Apparatus Good design and construction make for good results National Grid Transmission Model Despite its expense, this resource offers excellent value Einstein's Physics A vivid, accurate, compelling and rigorous treatment, but requiring an investment of time and thought WORTH A LOOK 3D Magnetic Tube Magnetic fields in three dimensions at a low cost Barton's Pendulums A neat, well-made and handy variant, but not a replacement for the more traditional version Weather Station Though not as robust or substantial as hoped for, this can be put to good use with the right software WEB WATCH An online experiment and worksheet are useful for teaching motor efficiency, a glance at CERN, and NASA's interesting information on the alpha-magnetic spectrometer and climate change

  17. SOCR: Statistics Online Computational Resource

    PubMed Central

    Dinov, Ivo D.

    2011-01-01

    The need for hands-on computer laboratory experience in undergraduate and graduate statistics education has been firmly established in the past decade. As a result a number of attempts have been undertaken to develop novel approaches for problem-driven statistical thinking, data analysis and result interpretation. In this paper we describe an integrated educational web-based framework for: interactive distribution modeling, virtual online probability experimentation, statistical data analysis, visualization and integration. Following years of experience in statistical teaching at all college levels using established licensed statistical software packages, like STATA, S-PLUS, R, SPSS, SAS, Systat, etc., we have attempted to engineer a new statistics education environment, the Statistics Online Computational Resource (SOCR). This resource performs many of the standard types of statistical analysis, much like other classical tools. In addition, it is designed in a plug-in object-oriented architecture and is completely platform independent, web-based, interactive, extensible and secure. Over the past 4 years we have tested, fine-tuned and reanalyzed the SOCR framework in many of our undergraduate and graduate probability and statistics courses and have evidence that SOCR resources build student’s intuition and enhance their learning. PMID:21451741

  18. Resource Manual

    ERIC Educational Resources Information Center

    Human Development Institute, 2008

    2008-01-01

    This manual was designed primarily for use by individuals with developmental disabilities and related conditions. The main focus of this manual is to provide easy-to-read information concerning available resources, and to provide immediate contact information for the purpose of applying for resources and/or locating additional information. The…

  19. NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.

    PubMed

    Gorgolewski, Krzysztof J; Varoquaux, Gael; Rivera, Gabriel; Schwarz, Yannick; Ghosh, Satrajit S; Maumet, Camille; Sochat, Vanessa V; Nichols, Thomas E; Poldrack, Russell A; Poline, Jean-Baptiste; Yarkoni, Tal; Margulies, Daniel S

    2015-01-01

    Here we present NeuroVault-a web based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain. NeuroVault is easy to use and employs modern web technologies to provide informative visualization of data without the need to install additional software. In addition, it leverages the power of the Neurosynth database to provide cognitive decoding of deposited maps. The data are exposed through a public REST API enabling other services and tools to take advantage of it. NeuroVault is a new resource for researchers interested in conducting meta- and coactivation analyses.

  20. NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain

    PubMed Central

    Gorgolewski, Krzysztof J.; Varoquaux, Gael; Rivera, Gabriel; Schwarz, Yannick; Ghosh, Satrajit S.; Maumet, Camille; Sochat, Vanessa V.; Nichols, Thomas E.; Poldrack, Russell A.; Poline, Jean-Baptiste; Yarkoni, Tal; Margulies, Daniel S.

    2015-01-01

    Here we present NeuroVault—a web based repository that allows researchers to store, share, visualize, and decode statistical maps of the human brain. NeuroVault is easy to use and employs modern web technologies to provide informative visualization of data without the need to install additional software. In addition, it leverages the power of the Neurosynth database to provide cognitive decoding of deposited maps. The data are exposed through a public REST API enabling other services and tools to take advantage of it. NeuroVault is a new resource for researchers interested in conducting meta- and coactivation analyses. PMID:25914639

  1. New parasites and predators follow the introduction of two fish species to a subarctic lake: implications for food-web structure and functioning

    USGS Publications Warehouse

    Amundsen, Per-Arne; Lafferty, Kevin D.; Knudsen, Rune; Primicerio, Raul; Kristoffersen, Roar; Klemetsen, Anders; Kuris, Armand M.

    2012-01-01

    Introduced species can alter the topology of food webs. For instance, an introduction can aid the arrival of free-living consumers using the new species as a resource, while new parasites may also arrive with the introduced species. Food-web responses to species additions can thus be far more complex than anticipated. In a subarctic pelagic food web with free-living and parasitic species, two fish species (arctic charr Salvelinus alpinus and three-spined stickleback Gasterosteus aculeatus) have known histories as deliberate introductions. The effects of these introductions on the food web were explored by comparing the current pelagic web with a heuristic reconstruction of the pre-introduction web. Extinctions caused by these introductions could not be evaluated by this approach. The introduced fish species have become important hubs in the trophic network, interacting with numerous parasites, predators and prey. In particular, five parasite species and four predatory bird species depend on the two introduced species as obligate trophic resources in the pelagic web and could therefore not have been present in the pre-introduction network. The presence of the two introduced fish species and the arrival of their associated parasites and predators increased biodiversity, mean trophic level, linkage density, and nestedness; altering both the network structure and functioning of the pelagic web. Parasites, in particular trophically transmitted species, had a prominent role in the network alterations that followed the introductions.

  2. Structural and Multilingual Approaches to Subject Access on the Web.

    ERIC Educational Resources Information Center

    Chan, Lois Mai; Lin, Xia; Zeng, Marcia

    This paper presents some of the efforts currently being made to develop mechanisms that can organize World Wide Web resources for efficient and effective retrieval, as well as programs that can accommodate multiple languages. Part 1 discusses structural approaches to organizing Web resources, including the use of hierarchical or…

  3. Deep Web video

    ScienceCinema

    None Available

    2016-07-12

    To make the web work better for science, OSTI has developed state-of-the-art technologies and services including a deep web search capability. The deep web includes content in searchable databases available to web users but not accessible by popular search engines, such as Google. This video provides an introduction to the deep web search engine.

  4. Deep Web video

    SciTech Connect

    None Available

    2009-06-01

    To make the web work better for science, OSTI has developed state-of-the-art technologies and services including a deep web search capability. The deep web includes content in searchable databases available to web users but not accessible by popular search engines, such as Google. This video provides an introduction to the deep web search engine.

  5. The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0).

    PubMed Central

    Kemball-Cook, G; Tuddenham, E G

    1997-01-01

    The HAMSTeRS WWW site was set up in 1996 in order to facilitate easy access to, and aid understanding of, the causes of haemophilia A at the molecular level; previously, the first and second text editions of the database have been published in Nucleic Acids Research. This report describes the facilities originally available at the site and the recent additions which we have made to increase its usefulness to clinicians, the molecular genetics community and structural biologists interested in factor VIII. The database (version 3.0) has been completely updated with easy submission of point mutations, deletions and insertions via e-mail of custom-designed forms. The searching of point mutations in the database has been made simpler and more robust, with a concomitantly expanded real-time bioinformatic analysis of the database. A methods section devoted to mutation detection has been added, highlighting issues such as choice of technique and PCR primer sequences. Finally, a FVIII structure section gives access to 3D VRML (Virtual Reality Modelling Language) files for any user-definable residue in a FVIII A domain homology model based on the crystal structure of human caeruloplasmin, together with secondary structural data and a sound+video animation of the model. It is intended that the general availability of this model will assist both in interpretation of causative mutations and selection of candidate residues forin vitromutagenesis. The HAMSTeRS URL is http://europium.mrc.rpms.ac.uk. PMID:9016520

  6. The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0).

    PubMed

    Kemball-Cook, G; Tuddenham, E G

    1997-01-01

    The HAMSTeRS WWW site was set up in 1996 in order to facilitate easy access to, and aid understanding of, the causes of haemophilia A at the molecular level; previously, the first and second text editions of the database have been published in Nucleic Acids Research. This report describes the facilities originally available at the site and the recent additions which we have made to increase its usefulness to clinicians, the molecular genetics community and structural biologists interested in factor VIII. The database (version 3.0) has been completely updated with easy submission of point mutations, deletions and insertions via e-mail of custom-designed forms. The searching of point mutations in the database has been made simpler and more robust, with a concomitantly expanded real-time bioinformatic analysis of the database. A methods section devoted to mutation detection has been added, highlighting issues such as choice of technique and PCR primer sequences. Finally, a FVIII structure section gives access to 3D VRML (Virtual Reality Modelling Language) files for any user-definable residue in a FVIII A domain homology model based on the crystal structure of human caeruloplasmin, together with secondary structural data and a sound+video animation of the model. It is intended that the general availability of this model will assist both in interpretation of causative mutations and selection of candidate residues forin vitromutagenesis. The HAMSTeRS URL is http://europium.mrc.rpms.ac.uk.

  7. Food additives

    PubMed Central

    Spencer, Michael

    1974-01-01

    Food additives are discussed from the food technology point of view. The reasons for their use are summarized: (1) to protect food from chemical and microbiological attack; (2) to even out seasonal supplies; (3) to improve their eating quality; (4) to improve their nutritional value. The various types of food additives are considered, e.g. colours, flavours, emulsifiers, bread and flour additives, preservatives, and nutritional additives. The paper concludes with consideration of those circumstances in which the use of additives is (a) justified and (b) unjustified. PMID:4467857

  8. Math on the Web: A Status Report.

    ERIC Educational Resources Information Center

    Miner, Robert; Topping, Paul

    This publication reports on resources on the Web for the area of math. A quick look is given at innovative sites under the areas of new resources for students, new ways for teachers and students to interact, new ways of presenting math, and new tools for research. Next, advantages and disadvantages are identified for each of the following…

  9. NASA's Earth Data Coherent Web

    NASA Astrophysics Data System (ADS)

    Gonzalez, R.; Murphy, K. J.; Cechini, M. F.

    2011-12-01

    NASA Earth Science Data Systems are a large and continuing investment in science data management activities. The Earth Science Data and Information System (ESDIS) project manages the science systems of the Earth Observing System Data and Information System (EOSDIS). EOSDIS provides science data to a wide community of users. Websites are the front door to data and services for users (science, programmatic, missions, citizen scientist, etc...), but these are disparate and disharmonious. Earth science is interdisciplinary thus, EOSDIS must enable users to discover and use the information, data and services they need in an easy and coherent manner. Users should be able to interact with each EOSDIS element in a predictable way and see EOSDIS as a program of inter-related but distinct systems each with expertise in a different science and/or information technology domain. Additionally, users should be presented with a general search capability that can be customized for each research discipline. Furthermore, the array of domain specific expertise along with crosscutting capabilities should be harmonized so users are presented with a common language and information framework to efficiently perform science investigations. The Earthdata Coherent Web Project goals are (1) to present NASA's EOSDIS as a coherent yet transparent system of systems that provide a highly functioning, integrated web presence that ties together information content and web services throughout EOSDIS so science users can easily find, access, and use data collected by NASA's Earth science missions. (2) Fresh, engaging and continually updated and coordinated content. (3) Create an active and immersive science user experience leveraging Web Services (e.g. W*S, SOAP, RESTful) from remote and local data centers and projects to reduce barriers to using EOSDIS data. Goals will be reached through a phased approach where functionality and processes are incrementally added. Phase I focused on the following main

  10. Web services at the European Bioinformatics Institute-2009

    PubMed Central

    Mcwilliam, Hamish; Valentin, Franck; Goujon, Mickael; Li, Weizhong; Narayanasamy, Menaka; Martin, Jenny; Miyar, Teresa; Lopez, Rodrigo

    2009-01-01

    The European Bioinformatics Institute (EMBL-EBI) has been providing access to mainstream databases and tools in bioinformatics since 1997. In addition to the traditional web form based interfaces, APIs exist for core data resources such as EMBL-Bank, Ensembl, UniProt, InterPro, PDB and ArrayExpress. These APIs are based on Web Services (SOAP/REST) interfaces that allow users to systematically access databases and analytical tools. From the user's point of view, these Web Services provide the same functionality as the browser-based forms. However, using the APIs frees the user from web page constraints and are ideal for the analysis of large batches of data, performing text-mining tasks and the casual or systematic evaluation of mathematical models in regulatory networks. Furthermore, these services are widespread and easy to use; require no prior knowledge of the technology and no more than basic experience in programming. In the following we wish to inform of new and updated services as well as briefly describe planned developments to be made available during the course of 2009–2010. PMID:19435877

  11. 3D Medical Volume Reconstruction Using Web Services

    PubMed Central

    Kooper, Rob; Shirk, Andrew; Lee, Sang-Chul; Lin, Amy; Folberg, Robert; Bajcsy, Peter

    2008-01-01

    We address the problem of 3D medical volume reconstruction using web services. The use of proposed web services is motivated by the fact that the problem of 3D medical volume reconstruction requires significant computer resources and human expertise in medical and computer science areas. Web services are implemented as an additional layer to a dataflow framework called Data to Knowledge. In the collaboration between UIC and NCSA, pre-processed input images at NCSA are made accessible to medical collaborators for registration. Every time UIC medical collaborators inspected images and selected corresponding features for registration, the web service at NCSA is contacted and the registration processing query is executed using the Image to Knowledge library of registration methods. Co-registered frames are returned for verification by medical collaborators in a new window. In this paper, we present 3D volume reconstruction problem requirements and the architecture of the developed prototype system at http://isda.ncsa.uiuc.edu/MedVolume. We also explain the tradeoffs of our system design and provide experimental data to support our system implementation. The prototype system has been used for multiple 3D volume reconstructions of blood vessels and vasculogenic mimicry patterns in histological sections of uveal melanoma studied by fluorescent confocal laser scanning microscope. PMID:18336808

  12. Robopedia: Leveraging Sensorpedia for Web-Enabled Robot Control

    SciTech Connect

    Resseguie, David R

    2010-01-01

    There is a growing interest in building Internetscale sensor networks that integrate sensors from around the world into a single unified system. In contrast, robotics application development has primarily focused on building specialized systems. These specialized systems take scalability and reliability into consideration, but generally neglect exploring the key components required to build a large scale system. Integrating robotic applications with Internet-scale sensor networks will unify specialized robotics applications and provide answers to large scale implementation concerns. We focus on utilizing Internet-scale sensor network technology to construct a framework for unifying robotic systems. Our framework web-enables a surveillance robot s sensor observations and provides a webinterface to the robot s actuators. This lets robots seamlessly integrate into web applications. In addition, the framework eliminates most prerequisite robotics knowledge, allowing for the creation of general web-based robotics applications. The framework also provides mechanisms to create applications that can interface with any robot. Frameworks such as this one are key to solving large scale mobile robotics implementation problems. We provide an overview of previous Internetscale sensor networks, Sensorpedia (an ad-hoc Internet-scale sensor network), our framework for integrating robots with Sensorpedia, two applications which illustrate our frameworks ability to support general web-based robotic control, and offer experimental results that illustrate our framework s scalability, feasibility, and resource requirements.

  13. Monitoring and Evaluating Use of the World Wide Web in an Academic Library: An Exploratory Study.

    ERIC Educational Resources Information Center

    Abramson, Alicia D.

    1998-01-01

    Examines use of the World Wide Web on public-access computers at the American University Library (Washington, D.C.) to identify the most frequently accessed Web sites, the frequency with which library-owned Web resources were accessed, and Web-usage patterns in the library in relation to the time of day and day of the week. (Author/AEF)

  14. Learning Tools for Knowledge Nomads: Using Personal Digital Assistants (PDAs) in Web-based Learning Environments.

    ERIC Educational Resources Information Center

    Loh, Christian Sebastian

    2001-01-01

    Examines how mobile computers, or personal digital assistants (PDAs), can be used in a Web-based learning environment. Topics include wireless networks on college campuses; online learning; Web-based learning technologies; synchronous and asynchronous communication via the Web; content resources; Web connections; and collaborative learning. (LRW)

  15. DOORS to the semantic web and grid with a PORTAL for biomedical computing.

    PubMed

    Taswell, Carl

    2008-03-01

    The semantic web remains in the early stages of development. It has not yet achieved the goals envisioned by its founders as a pervasive web of distributed knowledge and intelligence. Success will be attained when a dynamic synergism can be created between people and a sufficient number of infrastructure systems and tools for the semantic web in analogy with those for the original web. The domain name system (DNS), web browsers, and the benefits of publishing web pages motivated many people to register domain names and publish web sites on the original web. An analogous resource label system, semantic search applications, and the benefits of collaborative semantic networks will motivate people to register resource labels and publish resource descriptions on the semantic web. The Domain Ontology Oriented Resource System (DOORS) and Problem Oriented Registry of Tags and Labels (PORTAL) are proposed as infrastructure systems for resource metadata within a paradigm that can serve as a bridge between the original web and the semantic web. The Internet Registry Information Service (IRIS) registers [corrected] domain names while DNS publishes domain addresses with mapping of names to addresses for the original web. Analogously, PORTAL registers resource labels and tags while DOORS publishes resource locations and descriptions with mapping of labels to locations for the semantic web. BioPORT is proposed as a prototype PORTAL registry specific for the problem domain of biomedical computing.

  16. Adaptations to a Learning Resource

    ERIC Educational Resources Information Center

    Libbrecht, Paul

    2015-01-01

    Learning resources have been created to represent digital units of exchangeable materials that teachers and learners can pull from in order to support the learning processes. They resource themselves. Leveraging the web, one can often find these resources. But what characteristics do they need in order to be easily exchangeable? Although several…

  17. Designing an Online Resource Guide.

    ERIC Educational Resources Information Center

    Buchanan, Larry

    1997-01-01

    Discussion of integrating Internet resources into the curriculum focuses on designing an online resource guide. Procedures for developing a set of bookmarks, putting the bookmarks on a Web page, the Netscape bookmarks file, and creating a districtwide resource are explained. (LRW)

  18. Web Mining for Web Image Retrieval.

    ERIC Educational Resources Information Center

    Chen, Zheng; Wenyin, Liu; Zhang, Feng; Li, Mingjing; Zhang, Hongjiang

    2001-01-01

    Presents a prototype system for image retrieval from the Internet using Web mining. Discusses the architecture of the Web image retrieval prototype; document space modeling; user log mining; and image retrieval experiments to evaluate the proposed system. (AEF)

  19. SoyBase Simple Semantic Web Architecture and Protocol (SSWAP) Services

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Semantic web technologies offer the potential to link internet resources and data by shared concepts without having to rely on absolute lexical matches. Thus two web sites or web resources which are concerned with similar data types could be identified based on similar semantics. In the biological...

  20. Reviews CD-ROM: Scientific American—The Amateur Scientist 3.0 Book: The New Resourceful Physics Teacher Equipment: DynaKar Book: The Fundamentals of Imaging Book: Teaching Secondary Physics Book: Novel Materials and Smart Applications Equipment: Cryptic disk Web Watch

    NASA Astrophysics Data System (ADS)

    2012-05-01

    WE RECOMMEND Scientific American—The Amateur Scientist 3.0 Article collection spans the decades DynaKar DynaKar drives dynamics experiments The Fundamentals of Imaging Author covers whole imaging spectrum Teaching Secondary Physics Effective teaching is all in the approach Novel Materials and Smart Applications/Novel materials sample pack Resources kit samples smart materials WORTH A LOOK Cryptic disk Metal disk spins life into discussions about energy, surfaces and kinetics HANDLE WITH CARE The New Resourceful Physics Teacher Book brings creativity to physics WEB WATCH Apps for tablets and smartphones can aid physics teaching

  1. Web Mining: Machine Learning for Web Applications.

    ERIC Educational Resources Information Center

    Chen, Hsinchun; Chau, Michael

    2004-01-01

    Presents an overview of machine learning research and reviews methods used for evaluating machine learning systems. Ways that machine-learning algorithms were used in traditional information retrieval systems in the "pre-Web" era are described, and the field of Web mining and how machine learning has been used in different Web mining applications…

  2. Internet Resources for Tests and Measurements.

    ERIC Educational Resources Information Center

    Quinn, Brian

    1997-01-01

    Provides an annotated bibliography of Web sites dealing with tests and measurements, emphasizing resources for psychological testing. Subject categories include comprehensive, research and reference, journals and newsletters, listservs, usenet groups, organizations/institutions, and test-specific resources. (LRW)

  3. Web Content Accessibility of Consumer Health Information Web Sites for People with Disabilities: A Cross Sectional Evaluation

    PubMed Central

    Parmanto, Bambang

    2004-01-01

    Background The World Wide Web (WWW) has become an increasingly essential resource for health information consumers. The ability to obtain accurate medical information online quickly, conveniently and privately provides health consumers with the opportunity to make informed decisions and participate actively in their personal care. Little is known, however, about whether the content of this online health information is equally accessible to people with disabilities who must rely on special devices or technologies to process online information due to their visual, hearing, mobility, or cognitive limitations. Objective To construct a framework for an automated Web accessibility evaluation; to evaluate the state of accessibility of consumer health information Web sites; and to investigate the possible relationships between accessibility and other features of the Web sites, including function, popularity and importance. Methods We carried out a cross-sectional study of the state of accessibility of health information Web sites to people with disabilities. We selected 108 consumer health information Web sites from the directory service of a Web search engine. A measurement framework was constructed to automatically measure the level of Web Accessibility Barriers (WAB) of Web sites following Web accessibility specifications. We investigated whether there was a difference between WAB scores across various functional categories of the Web sites, and also evaluated the correlation between the WAB and Alexa traffic rank and Google Page Rank of the Web sites. Results We found that none of the Web sites we looked at are completely accessible to people with disabilities, i.e., there were no sites that had no violation of Web accessibility rules. However, governmental and educational health information Web sites do exhibit better Web accessibility than the other categories of Web sites (P < 0.001). We also found that the correlation between the WAB score and the popularity of a

  4. Dose-Response Effects of a Web-Based Physical Activity Program on Body Composition and Metabolic Health in Inactive Older Adults: Additional Analyses of a Randomized Controlled Trial

    PubMed Central

    Vroege, David P; Wijsman, Carolien A; Broekhuizen, Karen; de Craen, Anton JM; van Heemst, Diana; van der Ouderaa, Frans JG; van Mechelen, Willem; Slagboom, P Eline; Catt, Michael; Westendorp, Rudi GJ; Verhagen, Evert ALM

    2014-01-01

    Background Low physical activity is a major risk factor for several age-related diseases. Recently, we showed in a randomized controlled trial that a 12-week Web-based intervention (Philips DirectLife) to increase physical activity was effective in increasing physical activity levels and metabolic health in an inactive population aged 60-70 years. Objective The goal of this paper was to assess how many participants successfully reached the physical activity level as targeted by the intervention and what the effects of the intervention on body composition and metabolic health in these successful individuals were to provide insight in the maximum attainable effect of the intervention. Methods Among the 235 participants in a randomized controlled trial of the Actief en Gezond Oud (AGO) study, we assessed the effects of the intervention on metabolic parameters in those who had successfully reached their personalized physical activity target compared with the entire intervention group. Furthermore, we studied the dose-response effect of increase in physical activity on metabolic outcome within the intervention group. Results Of the intervention group, 50 of 119 (42.0%) participants successfully reached the physical activity target (corresponding to a 10% increased daily physical activity on average). This group showed markedly higher effects of the intervention compared to the entire intervention group, with greater decreases in body weight (2.74 vs 1.49 kg), waist circumference (3.74 vs 2.33 cm), insulin resistance (HOMA index: 0.23 vs 0.20), and in cholesterol/HDL ratio (0.39 vs 0.20) and Framingham risk score (0.90% vs 0.54%). We found that men compared to women were more likely to be successful. The dose-response analysis showed that there was a significant association between increase in minutes spent in moderate-to-vigorous activity and body weight loss, BMI reduction, waist circumference reduction, HDL cholesterol increasing, and cholesterol/HDL ratio lowering

  5. The VVT Project: A Web-Based Platform for Strategy Instruction and Research into Self-Regulated Learning of L2 Vocabulary

    ERIC Educational Resources Information Center

    Ranalli, James M.

    2012-01-01

    The focus of this dissertation is a web-based, second language (L2) instructional resource called VVT (Virtual Vocabulary Trainer) designed to teach integrated vocabulary depth of knowledge and dictionary referencing skills to tertiary-level learners of English as a Second Language (ESL). In addition to evaluating the potential of online resources…

  6. sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database

    PubMed Central

    Shah, Jyoti K; Garner, Harold R; White, Michael A; Shames, David S; Minna, John D

    2007-01-01

    Background RNA interference has revolutionized our ability to study the effects of altering the expression of single genes in mammalian (and other) cells through targeted knockdown of gene expression. In this report we describe a web-based computational tool, siRNA Information Resource (sIR), which consists of a new open source database that contains validation information about published siRNA sequences and also provides a user-friendly interface to design and analyze siRNA sequences against a chosen target sequence. Results The siRNA design tool described in this paper employs empirically determined rules derived from a meta-analysis of the published data; it uses a weighted scoring system that determines the optimal sequence within a target mRNA and thus aids in the rational selection of siRNA sequences. This scoring system shows a non-linear correlation with the knockdown efficiency of siRNAs. sIR provides a fast, customized BLAST output for all selected siRNA sequences against a variety of databases so that the user can verify the uniqueness of the design. We have pre-designed siRNAs for all the known human genes (24,502) in the Refseq database. These siRNAs were pre-BLASTed against the human Unigene database to estimate the target specificity and all results are available online. Conclusion Although most of the rules for this scoring system were influenced by previously published rules, the weighted scoring system provides better flexibility in designing an appropriate siRNA when compared to the un-weighted scoring system. sIR is not only a comprehensive tool used to design siRNA sequences and lookup pre-designed siRNAs, but it is also a platform where researchers can share information on siRNA design and use. PMID:17540034

  7. Dental undergraduate expectations and opinions of Web-based courseware to supplement traditional teaching methods.

    PubMed

    Eynon, R; Perryer, G; Walmsley, A D

    2003-08-01

    The rapid growth of Internet for the delivery of information has enabled teaching materials to be placed on websites allowing student access to course material. It is the aim of this paper to evaluate a cohort of dental undergraduate students who have used Web-based courseware in prosthetic dentistry for a semester. A questionnaire was distributed to clinical undergraduate students prior to the use of the prosthetics course to determine their experience of using the World Wide Web (WWW) and their expectations of an online course. A second questionnaire was distributed at the end of 6 months which asked about their usage and opinions of the prosthetics Web-based courseware. The main concerns raised at the beginning of the course were related to computer access, the ability to use computers, the time involved and their conception that the e-course would be an additional burden. The main potential benefits were perceived to be convenience, availability of information and the ability to reinforce or catch up on aspects of the module they did not understand or had missed. Feedback at the end of the year showed that most students had accessed the Web-based courseware site at least once a month and, generally, their comments were favourable, dispelling some of the initial perceived fears. They felt that the website was a quick and convenient way to access information and was a good additional resource. Access to the site and printing information were the main problems raised by the students who had to use a shared cluster. In conclusion, Web-based courseware was felt to be a useful additional resource for students. However, this research showed that sufficient computers and printers must be available for such a resource to become an integrated part of the dental course. PMID:12846818

  8. Efficiently Selecting the Best Web Services

    NASA Astrophysics Data System (ADS)

    Goncalves, Marlene; Vidal, Maria-Esther; Regalado, Alfredo; Yacoubi Ayadi, Nadia

    Emerging technologies and linking data initiatives have motivated the publication of a large number of datasets, and provide the basis for publishing Web services and tools to manage the available data. This wealth of resources opens a world of possibilities to satisfy user requests. However, Web services may have similar functionality and assess different performance; therefore, it is required to identify among the Web services that satisfy a user request, the ones with the best quality. In this paper we propose a hybrid approach that combines reasoning tasks with ranking techniques to aim at the selection of the Web services that best implement a user request. Web service functionalities are described in terms of input and output attributes annotated with existing ontologies, non-functionality is represented as Quality of Services (QoS) parameters, and user requests correspond to conjunctive queries whose sub-goals impose restrictions on the functionality and quality of the services to be selected. The ontology annotations are used in different reasoning tasks to infer service implicit properties and to augment the size of the service search space. Furthermore, QoS parameters are considered by a ranking metric to classify the services according to how well they meet a user non-functional condition. We assume that all the QoS parameters of the non-functional condition are equally important, and apply the Top-k Skyline approach to select the k services that best meet this condition. Our proposal relies on a two-fold solution which fires a deductive-based engine that performs different reasoning tasks to discover the services that satisfy the requested functionality, and an efficient implementation of the Top-k Skyline approach to compute the top-k services that meet the majority of the QoS constraints. Our Top-k Skyline solution exploits the properties of the Skyline Frequency metric and identifies the top-k services by just analyzing a subset of the services that

  9. Outreach for Outreach: Targeting social media audiences to promote a NASA kids’ web site

    NASA Astrophysics Data System (ADS)

    Pham, C. C.

    2009-12-01

    The Space Place is a successful NASA web site that benefits upper elementary school students and educators by providing games, activities, and resources to stimulate interest in science, technology, engineering, and mathematics, as well as to inform the audience of NASA’s contributions. As online social networking grows to be a central component of modern communication, The Space Place has explored the benefits of integrating social networks with the web site to increase awareness of materials the web site offers. This study analyzes the capabilities of social networks, and specifically the demographics of Twitter and Facebook. It then compares these results with the content, audience, and perceived demographics of The Space Place web site. Based upon the demographic results, we identified a target constituency that would benefit from the integration of social networks into The Space Place web site. As a result of this study, a Twitter feed has been established that releases a daily tweet from The Space Place. In addition, a Facebook page has been created to showcase new content and prompt interaction among fans of The Space Place. Currently, plans are under way to populate the Space Place Facebook page. Each social network has been utilized in an effort to spark excitement about the content on The Space Place, as well as to attract followers to the main NASA Space Place web site. To pursue this idea further, a plan has been developed to promote NASA Space Place’s social media tools among the target audience.

  10. Parasites alter the topology of a stream food web across seasons.

    PubMed

    Hernandez, Alexander D; Sukhdeo, Michael V K

    2008-06-01

    Relatively few published food webs have included parasites, and in this study we examined the animal community in a stream across eight contiguous seasons to test how inclusion of helminth parasites alters the topology or structure of the food web. Food webs constructed for each season and analyzed using common binary matrix measures show that species richness, linkage density, and the number of observed and possible links increased when parasites were included as individual species nodes. With parasite-parasite and predator-parasite links omitted, measures of community complexity, such as connectance (C), generally increased over multiple seasons. However, relative nestedness (n*) decreased when parasites were included, which may be a result of low resolution of basal resources inflating specialist-to-specialist links. Overall, adding parasites resulted in moderate changes in food web measures when compared to those of four other published food webs representing different ecosystems. In addition, including parasites in the food web revealed consistent pathways of energy flow, and the association of parasite life histories along these pathways suggest stable evolutionary groups of interacting species within the community.

  11. Flow Webs: Mechanism and Architecture for the Implementation of Sensor Webs

    NASA Astrophysics Data System (ADS)

    Gorlick, M. M.; Peng, G. S.; Gasster, S. D.; McAtee, M. D.

    2006-12-01

    The sensor web is a distributed, federated infrastructure much like its predecessors, the internet and the world wide web. It will be a federation of many sensor webs, large and small, under many distinct spans of control, that loosely cooperates and share information for many purposes. Realistically, it will grow piecemeal as distinct, individual systems are developed and deployed, some expressly built for a sensor web while many others were created for other purposes. Therefore, the architecture of the sensor web is of fundamental import and architectural strictures that inhibit innovation, experimentation, sharing or scaling may prove fatal. Drawing upon the architectural lessons of the world wide web, we offer a novel system architecture, the flow web, that elevates flows, sequences of messages over a domain of interest and constrained in both time and space, to a position of primacy as a dynamic, real-time, medium of information exchange for computational services. The flow web captures; in a single, uniform architectural style; the conflicting demands of the sensor web including dynamic adaptations to changing conditions, ease of experimentation, rapid recovery from the failures of sensors and models, automated command and control, incremental development and deployment, and integration at multiple levels—in many cases, at different times. Our conception of sensor webs—dynamic amalgamations of sensor webs each constructed within a flow web infrastructure—holds substantial promise for earth science missions in general, and of weather, air quality, and disaster management in particular. Flow webs, are by philosophy, design and implementation a dynamic infrastructure that permits massive adaptation in real-time. Flows may be attached to and detached from services at will, even while information is in transit through the flow. This concept, flow mobility, permits dynamic integration of earth science products and modeling resources in response to real

  12. Web Resources for Teaching about Human Rights

    ERIC Educational Resources Information Center

    Merryfield, Merry M.; Badang, Germain; Bragg, Christina; Kvasov, Aleksandr; Taylor, Nathan; Waliaula, Anne; Yamaguchi, Misato

    2012-01-01

    The study of human rights is inseparable from social studies. Beyond the basic political, economic, and social freedoms and rights spelled out in The Universal Declaration of Human Rights, hundreds of specialized topics have developed that demonstrate the complex nature of human rights in the twenty-first-century world--environmental exploitation…

  13. Top 12 Web Resources for 2012

    ERIC Educational Resources Information Center

    Gonzales, Lisa; Vodicka, Devin

    2012-01-01

    In this article, the authors describe some of the top websites recommended by colleagues for the Association of California School Administrators. The Top 12 for 2012 are: (1) Facebook (facebook.com); (2) Twitter (twitter.com); (3) Tungle (tungle.me); (4) FCMAT (fcmat.org); (5) YouSendIt (yousendit.com); (6) Slideshare (slideshare.net); (7) QR…

  14. MINING ENVIRONMENTAL TOXICOLOGY INFORMATION WEB RESOURCES

    EPA Science Inventory

    Environmental toxicology is the study of the ecological effects of anthropogenic substances released into the environment. It is a relatively diverse field addressing impacts to aquatic and terrestrial organisms and communities. The determination of potential risk associated with...

  15. CliniWeb: managing clinical information on the World Wide Web.

    PubMed Central

    Hersh, W R; Brown, K E; Donohoe, L C; Campbell, E M; Horacek, A E

    1996-01-01

    The World Wide Web is a powerful new way to deliver on-line clinical information, but several problems limit its value to health care professionals: content is highly distributed and difficult to find, clinical information is not separated from non-clinical information, and the current Web technology is unable to support some advanced retrieval capabilities. A system called CliniWeb has been developed to address these problems. CliniWeb is an index to clinical information on the World Wide Web, providing a browsing and searching interface to clinical content at the level of the health care student or provider. Its database contains a list of clinical information resources on the Web that are indexed by terms from the Medical Subject Headings disease tree and retrieved with the assistance of SAPHIRE. Limitations of the processes used to build the database are discussed, together with directions for future research. PMID:8816350

  16. Storage Manager and File Transfer Web Services

    SciTech Connect

    William A Watson III; Ying Chen; Jie Chen; Walt Akers

    2002-07-01

    Web services are emerging as an interesting mechanism for a wide range of grid services, particularly those focused upon information services and control. When coupled with efficient data transfer services, they provide a powerful mechanism for building a flexible, open, extensible data grid for science applications. In this paper we present our prototype work on a Java Storage Resource Manager (JSRM) web service and a Java Reliable File Transfer (JRFT) web service. A java client (Grid File Manager) on top of JSRM and is developed to demonstrate the capabilities of these web services. The purpose of this work is to show the extent to which SOAP based web services are an appropriate direction for building a grid-wide data management system, and eventually grid-based portals.

  17. 78 FR 79661 - Gallatin County Resource Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-31

    ...The Gallatin County Resource Advisory Committee (RAC) will meet in Bozeman, Montana. The RAC is authorized under the Secure Rural Schools and Community Self-Determination Act (the Act) (Pub. L. 110- 343) and operates in compliance with the Federal Advisory Committee Act (FACA) (5 U.S.C. App. II). Additional information concerning the RAC can be found by visiting the Act's Web site at......

  18. Evolution of the Web revolution.

    PubMed

    Gruwell, Cindy A

    2007-01-01

    The "Navigate the Net" column began in 1994 as a vehicle for health sciences librarians to share their explorations in finding Web-related resources located on the Internet. Over the years, there have been tremendous changes and growth in this very important information vehicle. The current editors of the column assumed their responsibility for the column in the spring of 1998. This article serves as a brief overview reflecting the changes in both the Internet and the resources hosted, maintained, and scrutinized by health sciences librarians and information professionals.

  19. CB-EMIS WEB SERVICE SOFTWARE

    2007-01-01

    This software provides CB-EMIS data to remote devices using a secure internet connection. The CB-EMIS Web Service filters and repackages data in a form suitable for resource limited devices such as a cell phone. Data transmission is filtered based on a user's authentical level. The web services acts as intermediary so that no direct connection is possible between the internet and the CB-EMIS server software.

  20. Guide to the Internet. The world wide web.

    PubMed Central

    Pallen, M.

    1995-01-01

    The world wide web provides a uniform, user friendly interface to the Internet. Web pages can contain text and pictures and are interconnected by hypertext links. The addresses of web pages are recorded as uniform resource locators (URLs), transmitted by hypertext transfer protocol (HTTP), and written in hypertext markup language (HTML). Programs that allow you to use the web are available for most operating systems. Powerful on line search engines make it relatively easy to find information on the web. Browsing through the web--"net surfing"--is both easy and enjoyable. Contributing to the web is not difficult, and the web opens up new possibilities for electronic publishing and electronic journals. Images p1554-a Fig 5 PMID:8520402

  1. Integrating Mathematics, Science, and Language Arts Instruction Using the World Wide Web.

    ERIC Educational Resources Information Center

    Clark, Kenneth; Hosticka, Alice; Kent, Judi; Browne, Ron

    1998-01-01

    Addresses issues of access to World Wide Web sites, mathematics and science content-resources available on the Web, and methods for integrating mathematics, science, and language arts instruction. (Author/ASK)

  2. A Web Tool for Research in Nonlinear Optics

    NASA Astrophysics Data System (ADS)

    Prikhod'ko, Nikolay V.; Abramovsky, Viktor A.; Abramovskaya, Natalia V.; Demichev, Andrey P.; Kryukov, Alexandr P.; Polyakov, Stanislav P.

    2016-02-01

    This paper presents a project of developing the web platform called WebNLO for computer modeling of nonlinear optics phenomena. We discuss a general scheme of the platform and a model for interaction between the platform modules. The platform is built as a set of interacting RESTful web services (SaaS approach). Users can interact with the platform through a web browser or command line interface. Such a resource has no analogues in the field of nonlinear optics and will be created for the first time therefore allowing researchers to access high-performance computing resources that will significantly reduce the cost of the research and development process.

  3. Parasites dominate food web links.

    PubMed

    Lafferty, Kevin D; Dobson, Andrew P; Kuris, Armand M

    2006-07-25

    Parasitism is the most common animal lifestyle, yet food webs rarely include parasites. The few earlier studies have indicated that including parasites leads to obvious increases in species richness, number of links, and food chain length. A less obvious result was that adding parasites slightly reduced connectance, a key metric considered to affect food web stability. However, reported reductions in connectance after the addition of parasites resulted from an inappropriate calculation. Two alternative corrective approaches applied to four published studies yield an opposite result: parasites increase connectance, sometimes dramatically. In addition, we find that parasites can greatly affect other food web statistics, such as nestedness (asymmetry of interactions), chain length, and linkage density. Furthermore, whereas most food webs find that top trophic levels are least vulnerable to natural enemies, the inclusion of parasites revealed that mid-trophic levels, not low trophic levels, suffered the highest vulnerability to natural enemies. These results show that food webs are very incomplete without parasites. Most notably, recognition of parasite links may have important consequences for ecosystem stability because they can increase connectance and nestedness.

  4. Effectiveness of a Web-Supplemented Astronomy Survey Course

    NASA Astrophysics Data System (ADS)

    Hufnagel, B.

    1997-12-01

    An astronomy survey course for \\ 200 non-science majors, offered in spring 1997 at Michigan State University, was supplemented with an internet site. Web access was voluntary, with the exception of about 10% of the homework problems. In addition, all of the answers to homeworks, in-class activities, and tests were available only on the website. The website included web versions of all the usual hard-copy handouts, as well as lecture notes, links to other astronomy URLs, and a frequently-asked question (FAQ) site taken from student email to the professors. MSU students can access the Web through \\ 30 PC labs on and off campus, and through private PCs in the dorms where most of the MSU students live. A mid-semester open-ended feedback form (for class credit) was administered in-class to the students, with 151 respondents. Their responses to the question ``About how frequently do you access the course website?'' will be correlated to their grade at that point in the course, their gender, and their purpose for accessing the website. These results will be interesting to astronomy teachers who would like to offer additional resources and more lines of communication to their students at low cost and without abandoning traditional methods.

  5. Resource Economics

    NASA Astrophysics Data System (ADS)

    Conrad, Jon M.

    1999-10-01

    Resource Economics is a text for students with a background in calculus, intermediate microeconomics, and a familiarity with the spreadsheet software Excel. The book covers basic concepts, shows how to set up spreadsheets to solve dynamic allocation problems, and presents economic models for fisheries, forestry, nonrenewable resources, stock pollutants, option value, and sustainable development. Within the text, numerical examples are posed and solved using Excel's Solver. Through these examples and additional exercises at the end of each chapter, students can make dynamic models operational, develop their economic intuition, and learn how to set up spreadsheets for the simulation of optimization of resource and environmental systems.

  6. Resource Discovery on the Internet

    NASA Astrophysics Data System (ADS)

    Adorf, H.-M.

    The prime sources for astronomical information resources on the Internet are the AstroWeb and the Star ∗s databases. For topics not covered by these databases, the Internet hosts a bewildering variety of resource discovery services including AliWeb, Harvest, InfoSeek, Lycos, WebCrawler, and the WWW Worm. These and other discovery tools are reviewed. They can be used to locate e.g. on-line library services, books and CD-ROMs, software, and people's e-mail addresses.

  7. Bringing Control System User Interfaces to the Web

    SciTech Connect

    Chen, Xihui; Kasemir, Kay

    2013-01-01

    With the evolution of web based technologies, especially HTML5 [1], it becomes possible to create web-based control system user interfaces (UI) that are cross-browser and cross-device compatible. This article describes two technologies that facilitate this goal. The first one is the WebOPI [2], which can seamlessly display CSS BOY [3] Operator Interfaces (OPI) in web browsers without modification to the original OPI file. The WebOPI leverages the powerful graphical editing capabilities of BOY and provides the convenience of re-using existing OPI files. On the other hand, it uses generic JavaScript and a generic communication mechanism between the web browser and web server. It is not optimized for a control system, which results in unnecessary network traffic and resource usage. Our second technology is the WebSocket-based Process Data Access (WebPDA) [4]. It is a protocol that provides efficient control system data communication using WebSocket [5], so that users can create web-based control system UIs using standard web page technologies such as HTML, CSS and JavaScript. WebPDA is control system independent, potentially supporting any type of control system.

  8. Phosphazene additives

    DOEpatents

    Harrup, Mason K; Rollins, Harry W

    2013-11-26

    An additive comprising a phosphazene compound that has at least two reactive functional groups and at least one capping functional group bonded to phosphorus atoms of the phosphazene compound. One of the at least two reactive functional groups is configured to react with cellulose and the other of the at least two reactive functional groups is configured to react with a resin, such as an amine resin of a polycarboxylic acid resin. The at least one capping functional group is selected from the group consisting of a short chain ether group, an alkoxy group, or an aryloxy group. Also disclosed are an additive-resin admixture, a method of treating a wood product, and a wood product.

  9. Potlining Additives

    SciTech Connect

    Rudolf Keller

    2004-08-10

    In this project, a concept to improve the performance of aluminum production cells by introducing potlining additives was examined and tested. Boron oxide was added to cathode blocks, and titanium was dissolved in the metal pool; this resulted in the formation of titanium diboride and caused the molten aluminum to wet the carbonaceous cathode surface. Such wetting reportedly leads to operational improvements and extended cell life. In addition, boron oxide suppresses cyanide formation. This final report presents and discusses the results of this project. Substantial economic benefits for the practical implementation of the technology are projected, especially for modern cells with graphitized blocks. For example, with an energy savings of about 5% and an increase in pot life from 1500 to 2500 days, a cost savings of $ 0.023 per pound of aluminum produced is projected for a 200 kA pot.

  10. EventWeb: towards social life networks.

    PubMed

    Jain, Ramesh

    2013-03-28

    The Web has changed the way we live, work and socialize. The nodes in the current Web are documents and hence the current World Wide Web is a Document Web. Advances in technology and requirements of emerging applications require formation of a parallel and closely connected Web of events, the EventWeb, in which each node is an event. In this paper, we explore growth of EventWeb as a natural next step in the evolution of the Web with rich multimodal sensory information. Social networks use events extensively and have revolutionized communication among people. Mobile phones, equipped with myriads of sensors and being used by more than 75% of living humans, are bringing the next generation of social networks, not only to connect people with other people, but also to connect people with other people and essential life resources. We call these networks social life networks, and believe that this is the right time to focus efforts to discover and develop technology and infrastructure to design and build these networks and to apply them for solving some essential human problems.

  11. JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing

    PubMed Central

    Brown, David K.; Penkler, David L.; Musyoka, Thommas M.; Bishop, Özlem Tastan

    2015-01-01

    Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS. PMID:26280450

  12. JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.

    PubMed

    Brown, David K; Penkler, David L; Musyoka, Thommas M; Bishop, Özlem Tastan

    2015-01-01

    Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS.

  13. JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.

    PubMed

    Brown, David K; Penkler, David L; Musyoka, Thommas M; Bishop, Özlem Tastan

    2015-01-01

    Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over high performance computing (HPC) clusters where they can take advantage of the aggregated resources of many powerful computers. In addition to this, researchers often want to integrate their workflows into their own web servers. In these cases, software is needed to manage the submission of jobs from the web interface to the cluster and then return the results once the job has finished executing. We have developed the Job Management System (JMS), a workflow management system and web interface for high performance computing (HPC). JMS provides users with a user-friendly web interface for creating complex workflows with multiple stages. It integrates this workflow functionality with the resource manager, a tool that is used to control and manage batch jobs on HPC clusters. As such, JMS combines workflow management functionality with cluster administration functionality. In addition, JMS provides developer tools including a code editor and the ability to version tools and scripts. JMS can be used by researchers from any field to build and run complex computational pipelines and provides functionality to include these pipelines in external interfaces. JMS is currently being used to house a number of bioinformatics pipelines at the Research Unit in Bioinformatics (RUBi) at Rhodes University. JMS is an open-source project and is freely available at https://github.com/RUBi-ZA/JMS. PMID:26280450

  14. Beyond Google: The Invisible Web in the Academic Library

    ERIC Educational Resources Information Center

    Devine, Jane; Egger-Sider, Francine

    2004-01-01

    This article analyzes the concept of the Invisible Web and its implication for academic librarianship. It offers a guide to tools that can be used to mine the Invisible Web and discusses the benefits of using the Invisible Web to promote interest in library services. In addition, the article includes an expanded definition, a literature review,…

  15. An Automatic Web Service Composition Framework Using QoS-Based Web Service Ranking Algorithm

    PubMed Central

    Mallayya, Deivamani; Ramachandran, Baskaran; Viswanathan, Suganya

    2015-01-01

    Web service has become the technology of choice for service oriented computing to meet the interoperability demands in web applications. In the Internet era, the exponential addition of web services nominates the “quality of service” as essential parameter in discriminating the web services. In this paper, a user preference based web service ranking (UPWSR) algorithm is proposed to rank web services based on user preferences and QoS aspect of the web service. When the user's request cannot be fulfilled by a single atomic service, several existing services should be composed and delivered as a composition. The proposed framework allows the user to specify the local and global constraints for composite web services which improves flexibility. UPWSR algorithm identifies best fit services for each task in the user request and, by choosing the number of candidate services for each task, reduces the time to generate the composition plans. To tackle the problem of web service composition, QoS aware automatic web service composition (QAWSC) algorithm proposed in this paper is based on the QoS aspects of the web services and user preferences. The proposed framework allows user to provide feedback about the composite service which improves the reputation of the services. PMID:26504894

  16. Selection of Electronic Resources.

    ERIC Educational Resources Information Center

    Weathers, Barbara

    1998-01-01

    Discusses the impact of electronic resources on collection development; selection of CD-ROMs, (platform, speed, video and sound, networking capability, installation and maintenance); selection of laser disks; and Internet evaluation (accuracy of content, authority, objectivity, currency, technical characteristics). Lists Web sites for evaluating…

  17. Acronyms & Resource Guide

    ERIC Educational Resources Information Center

    Association of American Universities, 2011

    2011-01-01

    This guide includes the following: higher education and related associations; advocacy organizations and coalitions of interest to research universities; explanations of acronyms and terms commonly used in the university community; web links to government resources and agencies; Executive and Legislative Branch offices; and key federal…

  18. Exposing SAMOS Data and Vocabularies within the Semantic Web

    NASA Astrophysics Data System (ADS)

    Dockery, Nkemdirim; Elya, Jocelyn; Smith, Shawn

    2014-05-01

    As part of the Ocean Data Interoperability Platform (ODIP), we at the Center for Ocean-Atmospheric Prediction Studies (COAPS) will present the development process for the exposure of quality-controlled data and core vocabularies managed by the Shipboard Automated Meteorological Oceanographic System (SAMOS) initiative using Semantic Web technologies. Participants in the SAMOS initiative collect continuous navigational (position, course, heading, speed), meteorological (winds, pressure, temperature, humidity, radiation), and near-surface oceanographic (sea temperature, salinity) parameters while at sea. One-minute interval observations are packaged and transmitted back to COAPS via daily emails, where they undergo standardized formatting and quality control. The authors will present methods used to expose these daily datasets. The Semantic Web, a vision of the World Wide Web Consortium, focuses on extending the principles of the web from connecting documents to connecting data. The creation of a web of Linked Data that can be used across different applications in a machine-readable way is the ultimate goal. The Resource Description Framework (RDF) is the standard language and format used in the Semantic Web. RDF pages may be queried using the SPARQL Protocol and RDF Query Language (SPARQL). The authors will showcase the development of RDF resources that map SAMOS vocabularies to internationally served vocabularies such as those found in the Natural Environment Research Council (NERC) Vocabulary Server. Each individual SAMOS vocabulary term (data parameter and quality control flag) will be described in an RDF resource page. These RDF resources will define each SAMOS vocabulary term and provide a link to the mapped vocabulary term (or multiple terms) served externally. Along with enhanced retrieval by parameter, time, and location, we will be able to add additional parameters with the confidence that they follow an international standard. The production of RDF

  19. Adding a visualization feature to web search engines: it's time.

    PubMed

    Wong, Pak Chung

    2008-01-01

    It's widely recognized that all Web search engines today are almost identical in presentation layout and behavior. In fact, the same presentation approach has been applied to depicting search engine results pages (SERPs) since the first Web search engine launched in 1993. In this Visualization Viewpoints article, I propose to add a visualization feature to Web search engines and suggest that the new addition can improve search engines' performance and capabilities, which in turn lead to better Web search technology.

  20. Density-based parallel skin lesion border detection with webCL

    PubMed Central

    2015-01-01

    addition, we tested parallel code on 100 dermoscopy images and showed the execution speedups with respect to the serial version. Results indicate that parallel (WebCL) version and serial version of density based lesion border detection methods generate the same accuracy rates for 100 dermoscopy images, in which mean of border error is 6.94%, mean of recall is 76.66%, and mean of precision is 99.29% respectively. Moreover, WebCL version's speedup factor for 100 dermoscopy images' lesion border detection averages around ~491.2. Conclusions When large amount of high resolution dermoscopy images considered in a usual clinical setting along with the critical importance of early detection and diagnosis of melanoma before metastasis, the importance of fast processing dermoscopy images become obvious. In this paper, we introduce WebCL and the use of it for biomedical image processing applications. WebCL is a javascript binding of OpenCL, which takes advantage of GPU computing from a web browser. Therefore, WebCL parallel version of density based skin lesion border detection introduced in this study can supplement expert dermatologist, and aid them in early diagnosis of skin lesions. While WebCL is currently an emerging technology, a full adoption of WebCL into the HTML5 standard would allow for this implementation to run on a very large set of hardware and software systems. WebCL takes full advantage of parallel computational resources including multi-cores and GPUs on a local machine, and allows for compiled code to run directly from the Web Browser. PMID:26423836

  1. Carnegie Science Academy Web Site

    NASA Astrophysics Data System (ADS)

    Kotwicki, John; Atzinger, Joe; Turso, Denise

    1997-11-01

    The Carnegie Science Academy is a professional society "For Teens...By Teens" at the Carnegie Science Center in Pittsburgh. The CSA Web Site [ http://csa.clpgh.org ] is designed for teens who have an interest in science and technology. This online or virtual science academy provides resources for teens in high school science classes. The Web site also allows students around the world to participate and communicate with other students, discuss current events in science, share opinions, find answers to questions, or make online friends. Visitors can enjoy the main components of the site or sign up for a free membership which allows access to our chat room for monthly meeting, online newsletter, members forum, and much more. Main components to the site include a spot for cool links and downloads, available for any visitor to download or view. Online exhibits are created by students to examine and publish an area of study and also allow teachers to easily post classroom activities as exhibits by submitting pictures and text. Random Access, the interactive part of the academy, allows users to share ideas and opinions. Planet CSA focuses on current events in science and the academy. In the future the CSA Web site will become a major resource for teens and science teachers providing materials that will allow students to further enhance their interest and experiences in science.

  2. Scientific Workflows and the Sensor Web for Virtual Environmental Observatories

    NASA Astrophysics Data System (ADS)

    Simonis, I.; Vahed, A.

    2008-12-01

    interfaces. All data sets and sensor communication follow well-defined abstract models and corresponding encodings, mostly developed by the OGC Sensor Web Enablement initiative. Scientific progress is currently accelerated by an emerging new concept called scientific workflows, which organize and manage complex distributed computations. A scientific workflow represents and records the highly complex processes that a domain scientist typically would follow in exploration, discovery and ultimately, transformation of raw data to publishable results. The challenge is now to integrate the benefits of scientific workflows with those provided by the Sensor Web in order to leverage all resources for scientific exploration, problem solving, and knowledge generation. Scientific workflows for the Sensor Web represent the next evolutionary step towards efficient, powerful, and flexible earth observation frameworks and platforms. Those platforms support the entire process from capturing data, sharing and integrating, to requesting additional observations. Multiple sites and organizations will participate on single platforms and scientists from different countries and organizations interact and contribute to large-scale research projects. Simultaneously, the data- and information overload becomes manageable, as multiple layers of abstraction will free scientists to deal with underlying data-, processing or storage peculiarities. The vision are automated investigation and discovery mechanisms that allow scientists to pose queries to the system, which in turn would identify potentially related resources, schedules processing tasks and assembles all parts in workflows that may satisfy the query.

  3. Consequences of symbiosis for food web dynamics.

    PubMed

    Kooi, B W; Kuijper, L D J; Kooijman, S A L M

    2004-09-01

    Basic Lotka-Volterra type models in which mutualism (a type of symbiosis where the two populations benefit both) is taken into account, may give unbounded solutions. We exclude such behaviour using explicit mass balances and study the consequences of symbiosis for the long-term dynamic behaviour of a three species system, two prey and one predator species in the chemostat. We compose a theoretical food web where a predator feeds on two prey species that have a symbiotic relationships. In addition to a species-specific resource, the two prey populations consume the products of the partner population as well. In turn, a common predator forages on these prey populations. The temporal change in the biomass and the nutrient densities in the reactor is described by ordinary differential equations (ODE). Since products are recycled, the dynamics of these abiotic materials must be taken into account as well, and they are described by odes in a similar way as the abiotic nutrients. We use numerical bifurcation analysis to assess the long-term dynamic behaviour for varying degrees of symbiosis. Attractors can be equilibria, limit cycles and chaotic attractors depending on the control parameters of the chemostat reactor. These control parameters that can be experimentally manipulated are the nutrient density of the inflow medium and the dilution rate. Bifurcation diagrams for the three species web with a facultative symbiotic association between the two prey populations, are similar to that of a bi-trophic food chain; nutrient enrichment leads to oscillatory behaviour. Predation combined with obligatory symbiotic prey-interactions has a stabilizing effect, that is, there is stable coexistence in a larger part of the parameter space than for a bi-trophic food chain. However, combined with a large growth rate of the predator, the food web can persist only in a relatively small region of the parameter space. Then, two zero-pair bifurcation points are the organizing centers. In

  4. CernVM WebAPI - Controlling Virtual Machines from the Web

    NASA Astrophysics Data System (ADS)

    Charalampidis, I.; Berzano, D.; Blomer, J.; Buncic, P.; Ganis, G.; Meusel, R.; Segal, B.

    2015-12-01

    Lately, there is a trend in scientific projects to look for computing resources in the volunteering community. In addition, to reduce the development effort required to port the scientific software stack to all the known platforms, the use of Virtual Machines (VMs)u is becoming increasingly popular. Unfortunately their use further complicates the software installation and operation, restricting the volunteer audience to sufficiently expert people. CernVM WebAPI is a software solution addressing this specific case in a way that opens wide new application opportunities. It offers a very simple API for setting-up, controlling and interfacing with a VM instance in the users computer, while in the same time offloading the user from all the burden of downloading, installing and configuring the hypervisor. WebAPI comes with a lightweight javascript library that guides the user through the application installation process. Malicious usage is prohibited by offering a per-domain PKI validation mechanism. In this contribution we will overview this new technology, discuss its security features and examine some test cases where it is already in use.

  5. Moby and Moby 2: creatures of the deep (web).

    PubMed

    Vandervalk, Ben P; McCarthy, E Luke; Wilkinson, Mark D

    2009-03-01

    Facile and meaningful integration of data from disparate resources is the 'holy grail' of bioinformatics. Some resources have begun to address this problem by providing their data using Semantic Web standards, specifically the Resource Description Framework (RDF) and the Web Ontology Language (OWL). Unfortunately, adoption of Semantic Web standards has been slow overall, and even in cases where the standards are being utilized, interconnectivity between resources is rare. In response, we have seen the emergence of centralized 'semantic warehouses' that collect public data from third parties, integrate it, translate it into OWL/RDF and provide it to the community as a unified and queryable resource. One limitation of the warehouse approach is that queries are confined to the resources that have been selected for inclusion. A related problem, perhaps of greater concern, is that the majority of bioinformatics data exists in the 'Deep Web'-that is, the data does not exist until an application or analytical tool is invoked, and therefore does not have a predictable Web address. The inability to utilize Uniform Resource Identifiers (URIs) to address this data is a barrier to its accessibility via URI-centric Semantic Web technologies. Here we examine 'The State of the Union' for the adoption of Semantic Web standards in the health care and life sciences domain by key bioinformatics resources, explore the nature and connectivity of several community-driven semantic warehousing projects, and report on our own progress with the CardioSHARE/Moby-2 project, which aims to make the resources of the Deep Web transparently accessible through SPARQL queries.

  6. Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory.

    PubMed

    Brazas, Michelle D; Yamada, Joseph T; Ouellette, B F Francis

    2010-07-01

    The Links Directory at Bioinformatics.ca continues its collaboration with Nucleic Acids Research to jointly publish and compile a freely accessible, online collection of tools, databases and resource materials for bioinformatics and molecular biology research. The July 2010 Web Server issue of Nucleic Acids Research adds an additional 115 web server tools and 7 updates to the directory at http://bioinformatics.ca/links_directory/, bringing the total number of servers listed close to an impressive 1500 links. The Bioinformatics Links Directory represents an excellent community resource for locating bioinformatic tools and databases to aid one's research, and in this context bioinformatic education needs and initiatives are discussed. A complete list of all links featured in this Nucleic Acids Research 2010 Web Server issue can be accessed online at http://bioinformatics.ca/links_directory/narweb2010/. The 2010 update of the Bioinformatics Links Directory, which includes the Web Server list and summaries, is also available online at the Nucleic Acids Research website, http://nar.oxfordjournals.org/.

  7. Biochemical View: A Web Site Providing Material for Teaching Biochemistry Using Multiple Approaches

    NASA Astrophysics Data System (ADS)

    Dórea, Fernanda C.; Rodrigues, Higor S.; Lapouble, Oscar M. M.; Pereira, Márcio R.; Castro, Mariana S.; Fontes, Wagner

    2007-11-01

    Computational resources are valuable tools for teaching biochemistry. Often, however, the necessary information is dispersed throughout several Web sites and many of the biochemistry software programs are only available commercially. Considering the difficulties of understanding abstract biochemical concepts, a Web site, Biochemical View (accessed Aug 2007) has been developed at the University of Brasília (UnB), Brazil. Its main goals are to complement course instruction and materials already in use, provide material to teachers preparing conventional and online courses, and—because free, full access is allowed—popularize the use of these resources in undergraduate courses. The contents, which include the usual metabolic pathways explaining the metabolism of carbohydrates, amino acids, lipids, and nucleic acids, are presented in two and three-dimensional formats, complemented with objective texts, schematics, and a description of regulation points. In this work, a new approach to metabolic pathways is employed, namely metabolic participation diagrams. In addition, experimental protocols for laboratory classes, study material, and detailed information about each molecule taking part in a specific metabolic pathway have been also made available in the Web site. The process of constructing the site is described and the results of students using this Web site are evaluated based on exam scores and survey forms, which show a significant improvement in students' success in learning biochemistry.

  8. Critical Path Web Site

    NASA Technical Reports Server (NTRS)

    Robinson, Judith L.; Charles, John B.; Rummel, John A. (Technical Monitor)

    2000-01-01

    Approximately three years ago, the Agency's lead center for the human elements of spaceflight (the Johnson Space Center), along with the National Biomedical Research Institute (NSBRI) (which has the lead role in developing countermeasures) initiated an activity to identify the most critical risks confronting extended human spaceflight. Two salient factors influenced this activity: first, what information is needed to enable a "go/no go" decision to embark on extended human spaceflight missions; and second, what knowledge and capabilities are needed to address known and potential health, safety and performance risks associated with such missions. A unique approach was used to first define and assess those risks, and then to prioritize them. This activity was called the Critical Path Roadmap (CPR) and it represents an opportunity to develop and implement a focused and evolving program of research and technology designed from a "risk reduction" perspective to prevent or minimize the risks to humans exposed to the space environment. The Critical Path Roadmap provides the foundation needed to ensure that human spaceflight, now and in the future, is as safe, productive and healthy as possible (within the constraints imposed on any particular mission) regardless of mission duration or destination. As a tool, the Critical Path Roadmap enables the decision maker to select from among the demonstrated or potential risks those that are to be mitigated, and the completeness of that mitigation. The primary audience for the CPR Web Site is the members of the scientific community who are interested in the research and technology efforts required for ensuring safe and productive human spaceflight. They may already be informed about the various space life sciences research programs or they may be newcomers. Providing the CPR content to potential investigators increases the probability of their delivering effective risk mitigations. Others who will use the CPR Web Site and its

  9. Critical Path Web Site

    NASA Technical Reports Server (NTRS)

    Robinson, Judith L.; Charles, John B.; Rummel, John A. (Technical Monitor)

    2000-01-01

    Approximately three years ago, the Agency's lead center for the human elements of spaceflight (the Johnson Space Center), along with the National Biomedical Research Institute (NSBRI) (which has the lead role in developing countermeasures) initiated an activity to identify the most critical risks confronting extended human spaceflight. Two salient factors influenced this activity: first, what information is needed to enable a "go/no go" decision to embark on extended human spaceflight missions; and second, what knowledge and capabilities are needed to address known and potential health, safety and performance risks associated with such missions. A unique approach was used to first define and assess those risks, and then to prioritize them. This activity was called the Critical Path Roadmap (CPR) and it represents an opportunity to develop and implement a focused and evolving program of research and technology designed from a "risk reduction" perspective to prevent or minimize the risks to humans exposed to the space environment. The Critical Path Roadmap provides the foundation needed to ensure that human spaceflight, now and in the future, is as safe, productive and healthy as possible (within the constraints imposed on any particular mission) regardless of mission duration or destination. As a tool, the Critical Path Roadmap enables the decisionmaker to select from among the demonstrated or potential risks those that are to be mitigated, and the completeness of that mitigation. The primary audience for the CPR Web Site is the members of the scientific community who are interested in the research and technology efforts required for ensuring safe and productive human spaceflight. They may already be informed about the various space life sciences research programs or they may be newcomers. Providing the CPR content to potential investigators increases the probability of their delivering effective risk mitigations. Others who will use the CPR Web Site and its content

  10. Promoting Your Web Site.

    ERIC Educational Resources Information Center

    Raeder, Aggi

    1997-01-01

    Discussion of ways to promote sites on the World Wide Web focuses on how search engines work and how they retrieve and identify sites. Appropriate Web links for submitting new sites and for Internet marketing are included. (LRW)

  11. OneGeology Web Services and Portal as a global geological SDI - latest standards and technology

    NASA Astrophysics Data System (ADS)

    Duffy, Tim; Tellez-Arenas, Agnes

    2014-05-01

    The global coverage of OneGeology Web Services (www.onegeology.org and portal.onegeology.org) achieved since 2007 from the 120 participating geological surveys will be reviewed and issues arising discussed. Recent enhancements to the OneGeology Web Services capabilities will be covered including new up to 5 star service accreditation scheme utilising the ISO/OGC Web Mapping Service standard version 1.3, core ISO 19115 metadata additions and Version 2.0 Web Feature Services (WFS) serving the new IUGS-CGI GeoSciML V3.2 geological web data exchange language standard (http://www.geosciml.org/) with its associated 30+ IUGS-CGI available vocabularies (http://resource.geosciml.org/ and http://srvgeosciml.brgm.fr/eXist2010/brgm/client.html). Use of the CGI simpelithology and timescale dictionaries now allow those who wish to do so to offer data harmonisation to query their GeoSciML 3.2 based Web Feature Services and their GeoSciML_Portrayal V2.0.1 (http://www.geosciml.org/) Web Map Services in the OneGeology portal (http://portal.onegeology.org). Contributing to OneGeology involves offering to serve ideally 1:1000,000 scale geological data (in practice any scale now is warmly welcomed) as an OGC (Open Geospatial Consortium) standard based WMS (Web Mapping Service) service from an available WWW server. This may either be hosted within the Geological Survey or a neighbouring, regional or elsewhere institution that offers to serve that data for them i.e. offers to help technically by providing the web serving IT infrastructure as a 'buddy'. OneGeology is a standards focussed Spatial Data Infrastructure (SDI) and works to ensure that these standards work together and it is now possible for European Geological Surveys to register their INSPIRE web services within the OneGeology SDI (e.g. see http://www.geosciml.org/geosciml/3.2/documentation/cookbook/INSPIRE_GeoSciML_Cookbook%20_1.0.pdf). The Onegeology portal (http://portal.onegeology.org) is the first port of call for anyone

  12. The food web of a tropical rain forest

    SciTech Connect

    Reagan, D.P.; Waide, R.B.

    1996-12-31

    This book summarizes the natural history and trophic dynamics of a relatively simple tropical rain forest community. The community consists of the plants and animals inhabiting a 40 ha area of forest around the El Verde Field Station in the Luquillo Experimental Forest of Puerto Rico. The understanding is based on three decades (1963 to 1993) of investigations conducted or coordinated by the biologists in the Terrestrial Ecology Division of the University of Puerto Rico (formerly the Center for Energy and Environment Research) and by many visiting scientists who have worked at El Verde. The authors construct a comprehensive food web documenting the relationships among species in this community as a means of organizing the information that`s been collected. Lay-people, students, academics, resource managers, professional scientists, and others interested in the natural history of tropical forests should find points of interest in this book. In addition, ecologists specializing in the study of trophic dynamics are provided with a detailed food web from a biome underrepresented in the available data base and with the interpretations of the importance of this web.

  13. Improving Writing: Resources, Strategies, Assessments.

    ERIC Educational Resources Information Center

    Lenski, Susan Davis; Johns, Jerry L.

    Comprehensive and practical, this book provides resources, strategies, and assessments that seamlessly weave writing into everyday classroom routines. The resources in the book include reproducible student worksheets, transparency masters, teacher and student examples, and technology tips in the form of Web site addresses. Strategies throughout…

  14. Internet Resources for Latin America.

    ERIC Educational Resources Information Center

    Molloy, Molly E., Comp.

    This directory compiles information products and services and other resources pertaining to Latin America that were available on the Internet as of February 1996. Part 1 lists 15 World Wide Web (WWW) URLs that link to other subject or geographical lists of Internet sites providing Latin American resources. Part 2 lists approximately 115…

  15. Silicon dendritic web growth

    NASA Technical Reports Server (NTRS)

    Duncan, S.

    1984-01-01

    Technological goals for a silicon dendritic web growth program effort are presented. Principle objectives for this program include: (1) grow long web crystals front continuously replenished melt; (2) develop temperature distribution in web and melt; (3) improve reproductibility of growth; (4) develop configurations for increased growth rates (width and speed); (5) develop new growth system components as required for improved growth; and (6) evaluate quality of web growth.

  16. How to Weave... the Web Into K-8 Science

    ERIC Educational Resources Information Center

    Wetzel, David R.

    2005-01-01

    Like a search engine for science teachers, How to... "Weave the Web into K-8 Science" is a custom-made guide to bringing the best of the Internet into the classroom. Author David Wetzel has done the work of locating online materials. The book offers resources for Web-based science teaching and learning plus online technical help for both…

  17. What Should Be On A School Library Web Page?

    ERIC Educational Resources Information Center

    Baumbach, Donna; Brewer, Sally; Renfroe, Matt

    2004-01-01

    As varied as the schools and the communities they serve, so too are the Web pages for the library media programs that serve them. This article provides guidelines for effective web design and the information that might be included, including reference resources, reference asistance, curriculum support, literacy advocacy, and dynamic material. An…

  18. Authentic Classical Haiku and Painting Studies on the Web.

    ERIC Educational Resources Information Center

    Saga, Hiroo

    2003-01-01

    Describes the author's Web site, which is devoted to the Japanese poet-painter Yosa Buson (1716-1784) and contains articles on Buson, bibliographic resources, and a pictorial catalog of haiku and paintings. This paper covers project purpose and background, subject area and materials, contexts of the development, structure of the Web site,…

  19. Does the Web Contain Pedagogically Informed Materials? The COSREW Outcomes

    ERIC Educational Resources Information Center

    Nitchot, Athitaya; Gilbert, Lester

    2015-01-01

    Web resources allow a learner to have more opportunities for study at any time and any place. It is still difficult, however, for learners to choose the right study materials to match their desired learning. A competence-based system for recommending study materials from the Web (COSREW) is proposed, based on the learner's competences. COSREW…

  20. Introductory Soil Science Exercises Using USDA Web Soil Survey

    ERIC Educational Resources Information Center

    Post, Christopher J.; Mikhailova, Elena; McWhorter, Christopher M.

    2007-01-01

    The USDA, Natural Resource Conservation Service (NRCS) Web Soil Survey is a valuable teaching tool for soil science education. By incorporating the Web Soil Survey into an undergraduate-level course, students are able to use the most detailed digital soil survey information without the steep learning curve associated with geographic information…