Comparing a quasi-3D to a full 3D nearshore circulation model: SHORECIRC and ROMS

USGS Publications Warehouse

Haas, K.A.; Warner, J.C.

2009-01-01

Predictions of nearshore and surf zone processes are important for determining coastal circulation, impacts of storms, navigation, and recreational safety. Numerical modeling of these systems facilitates advancements in our understanding of coastal changes and can provide predictive capabilities for resource managers. There exists many nearshore coastal circulation models, however they are mostly limited or typically only applied as depth integrated models. SHORECIRC is an established surf zone circulation model that is quasi-3D to allow the effect of the variability in the vertical structure of the currents while maintaining the computational advantage of a 2DH model. Here we compare SHORECIRC to ROMS, a fully 3D ocean circulation model which now includes a three dimensional formulation for the wave-driven flows. We compare the models with three different test applications for: (i) spectral waves approaching a plane beach with an oblique angle of incidence; (ii) monochromatic waves driving longshore currents in a laboratory basin; and (iii) monochromatic waves on a barred beach with rip channels in a laboratory basin. Results identify that the models are very similar for the depth integrated flows and qualitatively consistent for the vertically varying components. The differences are primarily the result of the vertically varying radiation stress utilized by ROMS and the utilization of long wave theory for the radiation stress formulation in vertical varying momentum balance by SHORECIRC. The quasi-3D model is faster, however the applicability of the fully 3D model allows it to extend over a broader range of processes, temporal, and spatial scales. ?? 2008 Elsevier Ltd.

UTSG-2; A theoretical model describing the transient behavior of a pressurized water reactor natural circulation U-tube steam generator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hold, A.

An advanced nonlinear transient model for calculating steady-state and dynamic behaviors of characteristic parameters of a Kraftwerk Union-type vertical natural-circulation U-tube steam generator and its main steam system is presented. This model has been expanded due to the increasing need for safety-related accident research studies. It now takes into consideration the possibilities of dryout and superheating along the secondary side of the steam generator. The resulting theoretical model is the basis of the digital code UTSG-2, which can be used both by itself and in combination with other pressurized water reactor transient codes, such as ALMOD-3.4, AMOD-4, and ATHLET.

On the Origin of the Double-cell Meridional Circulation in the Solar Convection Zone

NASA Astrophysics Data System (ADS)

Pipin, V. V.; Kosovichev, A. G.

2018-02-01

Recent advances in helioseismology, numerical simulations and mean-field theory of solar differential rotation have shown that the meridional circulation pattern may consist of two or more cells in each hemisphere of the convection zone. According to the mean-field theory the double-cell circulation pattern can result from the sign inversion of a nondiffusive part of the radial angular momentum transport (the so-called Λ-effect) in the lower part of the solar convection zone. Here, we show that this phenomenon can result from the radial inhomogeneity of the Coriolis number, which depends on the convective turnover time. We demonstrate that if this effect is taken into account then the solar-like differential rotation and the double-cell meridional circulation are both reproduced by the mean-field model. The model is consistent with the distribution of turbulent velocity correlations determined from observations by tracing motions of sunspots and large-scale magnetic fields, indicating that these tracers are rooted just below the shear layer.

NEIGHBORHOOD SCALE AIR QUALITY MODELING IN HOUSTON USING URBAN CANOPY PARAMETERS IN MM5 AND CMAQ WITH IMPROVED CHARACTERIZATION OF MESOSCALE LAKE-LAND BREEZE CIRCULATION

EPA Science Inventory

Advanced capability of air quality simulation models towards accurate performance at finer scales will be needed for such models to serve as tools for performing exposure and risk assessments in urban areas. It is recognized that the impact of urban features such as street and t...

Numerical optimization techniques for bound circulation distribution for minimum induced drag of Nonplanar wings: Computer program documentation

NASA Technical Reports Server (NTRS)

Kuhlman, J. M.; Ku, T. J.

1981-01-01

A two dimensional advanced panel far-field potential flow model of the undistorted, interacting wakes of multiple lifting surfaces was developed which allows the determination of the spanwise bound circulation distribution required for minimum induced drag. This model was implemented in a FORTRAN computer program, the use of which is documented in this report. The nonplanar wakes are broken up into variable sized, flat panels, as chosen by the user. The wake vortex sheet strength is assumed to vary linearly over each of these panels, resulting in a quadratic variation of bound circulation. Panels are infinite in the streamwise direction. The theory is briefly summarized herein; sample results are given for multiple, nonplanar, lifting surfaces, and the use of the computer program is detailed in the appendixes.

Southwest Pacific Ocean Circulation and Climate Experiment (SPICE) scientific advances and future west pacific coordination

NASA Astrophysics Data System (ADS)

Ganachaud, A. S.; Sprintall, J.; Lin, X.; Ando, K.

2016-02-01

The Southwest Pacific Ocean Circulation and Climate Experiment (SPICE) is an international research program under the auspices of CLIVAR (Climate Variability and Predictability). The key objectives are to understand the Southwest Pacific Ocean circulation and Convergence Zone (SPCZ) dynamics, as well as their influence on regional and basin-scale climate patterns. It was designed to measure and monitor the ocean circulation, and to validate and improve numerical models. South Pacific oceanic waters are carried from the subtropical gyre centre in the westward flowing South Equatorial Current (SEC), towards the southwest Pacific-a major circulation pathway that redistributes water from the subtropics to the equator and Southern Ocean. Water transit through the Coral and Solomon Seas is potentially of great importance to tropical climate prediction because changes in either the temperature or the amount of water arriving at the equator have the capability to modulate ENSO and produce basin-scale climate feedbacks. On average, the oceanic circulation is driven by the Trade Winds, and subject to substantial variability, related with the SPCZ position and intensity. The circulation is complex, with the SEC splitting into zonal jets upon encountering island archipelagos, before joining either the East Australian Current or the New Guinea Costal UnderCurrent towards the equator. SPICE included large, coordinated in situ measurement programs and high resolution numerical simulations of the area. After 8 years of substantial in situ oceanic observational and modeling efforts, our understanding of the region has much improved. We have a refined description of the SPCZ behavior, boundary currents, pathways, and water mass transformation, including the previously undocumented Solomon Sea. The transports are large and vary substantially in a counter-intuitive way, with asymmetries and gating effects that depend on time scales. We will review the recent advancements and discuss our current knowledge gaps and important emerging research directions. In particular we will discuss how SPICE, along with the Northwestern Pacific Ocean Circulation and Climate Experiment (NPOCE) and Indonesian ThroughFlow (ITF) programs could evolve toward an integrative observing system under CLIVAR coordination.

Proteomics and plant disease: advances in combating a major threat to the global food supply.

PubMed

Rampitsch, Christof; Bykova, Natalia V

2012-02-01

The study of plant disease and immunity is benefiting tremendously from proteomics. Parallel streams of research from model systems, from pathogens in vitro and from the relevant pathogen-crop interactions themselves have begun to reveal a model of how plants succumb to invading pathogens and how they defend themselves without the benefit of a circulating immune system. In this review, we discuss the contribution of proteomics to these advances, drawing mainly on examples from crop-fungus interactions, from Arabidopsis-bacteria interactions, from elicitor-based model systems and from pathogen studies, to highlight also the important contribution of non-crop systems to advancing crop protection. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

EUREC4A: A Field Campaign to Elucidate the Couplings Between Clouds, Convection and Circulation

NASA Astrophysics Data System (ADS)

Bony, Sandrine; Stevens, Bjorn; Ament, Felix; Bigorre, Sebastien; Chazette, Patrick; Crewell, Susanne; Delanoë, Julien; Emanuel, Kerry; Farrell, David; Flamant, Cyrille; Gross, Silke; Hirsch, Lutz; Karstensen, Johannes; Mayer, Bernhard; Nuijens, Louise; Ruppert, James H.; Sandu, Irina; Siebesma, Pier; Speich, Sabrina; Szczap, Frédéric; Totems, Julien; Vogel, Raphaela; Wendisch, Manfred; Wirth, Martin

2017-11-01

Trade-wind cumuli constitute the cloud type with the highest frequency of occurrence on Earth, and it has been shown that their sensitivity to changing environmental conditions will critically influence the magnitude and pace of future global warming. Research over the last decade has pointed out the importance of the interplay between clouds, convection and circulation in controling this sensitivity. Numerical models represent this interplay in diverse ways, which translates into different responses of trade-cumuli to climate perturbations. Climate models predict that the area covered by shallow cumuli at cloud base is very sensitive to changes in environmental conditions, while process models suggest the opposite. To understand and resolve this contradiction, we propose to organize a field campaign aimed at quantifying the physical properties of trade-cumuli (e.g., cloud fraction and water content) as a function of the large-scale environment. Beyond a better understanding of clouds-circulation coupling processes, the campaign will provide a reference data set that may be used as a benchmark for advancing the modelling and the satellite remote sensing of clouds and circulation. It will also be an opportunity for complementary investigations such as evaluating model convective parameterizations or studying the role of ocean mesoscale eddies in air-sea interactions and convective organization.

EUREC4A: A Field Campaign to Elucidate the Couplings Between Clouds, Convection and Circulation

NASA Astrophysics Data System (ADS)

Bony, Sandrine; Stevens, Bjorn; Ament, Felix; Bigorre, Sebastien; Chazette, Patrick; Crewell, Susanne; Delanoë, Julien; Emanuel, Kerry; Farrell, David; Flamant, Cyrille; Gross, Silke; Hirsch, Lutz; Karstensen, Johannes; Mayer, Bernhard; Nuijens, Louise; Ruppert, James H.; Sandu, Irina; Siebesma, Pier; Speich, Sabrina; Szczap, Frédéric; Totems, Julien; Vogel, Raphaela; Wendisch, Manfred; Wirth, Martin

Trade-wind cumuli constitute the cloud type with the highest frequency of occurrence on Earth, and it has been shown that their sensitivity to changing environmental conditions will critically influence the magnitude and pace of future global warming. Research over the last decade has pointed out the importance of the interplay between clouds, convection and circulation in controling this sensitivity. Numerical models represent this interplay in diverse ways, which translates into different responses of tradecumuli to climate perturbations. Climate models predict that the area covered by shallow cumuli at cloud base is very sensitive to changes in environmental conditions, while process models suggest the opposite. To understand and resolve this contradiction, we propose to organize a field campaign aimed at quantifying the physical properties of tradecumuli (e.g., cloud fraction and water content) as a function of the large-scale environment. Beyond a better understanding of clouds-circulation coupling processes, the campaign will provide a reference data set that may be used as a benchmark for advancing the modelling and the satellite remote sensing of clouds and circulation. It will also be an opportunity for complementary investigations such as evaluating model convective parameterizations or studying the role of ocean mesoscale eddies in air-sea interactions and convective organization.

Intraseasonal and Interannual Variability of Mars Present Climate

NASA Astrophysics Data System (ADS)

Hollingsworth, Jeffery L.; Bridger, Alison F. C.; Haberle, Robert M.

1996-01-01

This is a Final Report for a Joint Research Interchange (JRI) between NASA Ames Research Center and San Jose State University, Department of Meteorology. The focus of this JRI has been to investigate the nature of intraseasonal and interannual variability of Mars'present climate. We have applied a three-dimensional climate model based on the full hydrostatic primitive equations to determine the spatial, but primarily, the temporal structures of the planet's large-scale circulation as it evolves during a given seasonal advance, and, over multi-annual cycles. The particular climate model applies simplified physical parameterizations and is computationally efficient. It could thus easily be integrated in a perpetual season or advancing season configuration, as well as over many Mars years. We have assessed both high and low-frequency components of the circulation (i.e., motions having periods of Omicron(2-10 days) or greater than Omicron(10 days), respectively). Results from this investigation have explored the basic issue whether Mars' climate system is naturally 'chaotic' associated with nonlinear interactions of the large-scale circulation-regardless of any allowance for year-to-year variations in external forcing mechanisms. Titles of papers presented at scientific conferences and a manuscript to be submitted to the scientific literature are provided. An overview of a areas for further investigation is also presented.

2-D Circulation Control Airfoil Benchmark Experiments Intended for CFD Code Validation

NASA Technical Reports Server (NTRS)

Englar, Robert J.; Jones, Gregory S.; Allan, Brian G.; Lin, Johb C.

2009-01-01

A current NASA Research Announcement (NRA) project being conducted by Georgia Tech Research Institute (GTRI) personnel and NASA collaborators includes the development of Circulation Control (CC) blown airfoils to improve subsonic aircraft high-lift and cruise performance. The emphasis of this program is the development of CC active flow control concepts for both high-lift augmentation, drag control, and cruise efficiency. A collaboration in this project includes work by NASA research engineers, whereas CFD validation and flow physics experimental research are part of NASA s systematic approach to developing design and optimization tools for CC applications to fixed-wing aircraft. The design space for CESTOL type aircraft is focusing on geometries that depend on advanced flow control technologies that include Circulation Control aerodynamics. The ability to consistently predict advanced aircraft performance requires improvements in design tools to include these advanced concepts. Validation of these tools will be based on experimental methods applied to complex flows that go beyond conventional aircraft modeling techniques. This paper focuses on recent/ongoing benchmark high-lift experiments and CFD efforts intended to provide 2-D CFD validation data sets related to NASA s Cruise Efficient Short Take Off and Landing (CESTOL) study. Both the experimental data and related CFD predictions are discussed.

Blood-Based Analyses of Cancer: Circulating Tumor Cells and Circulating Tumor DNA

PubMed Central

Haber, Daniel A.; Velculescu, Victor E.

2015-01-01

The ability to study nonhematologic cancers through noninvasive sampling of blood is one of the most exciting and rapidly advancing fields in cancer diagnostics. This has been driven both by major technologic advances, including the isolation of intact cancer cells and the analysis of cancer cell–derived DNA from blood samples, and by the increasing application of molecularly driven therapeutics, which rely on such accurate and timely measurements of critical biomarkers. Moreover, the dramatic efficacy of these potent cancer therapies drives the selection for additional genetic changes as tumors acquire drug resistance, necessitating repeated sampling of cancer cells to adjust therapy in response to tumor evolution. Together, these advanced noninvasive diagnostic capabilities and their applications in guiding precision cancer therapies are poised to change the ways in which we select and monitor cancer treatments. Significance Recent advances in technologies to analyze circulating tumor cells and circulating tumor DNA are setting the stage for real-time, noninvasive monitoring of cancer and providing novel insights into cancer evolution, invasion, and metastasis. PMID:24801577

The Potential for Predicting Precipitation on Seasonal-to-Interannual Timescales

NASA Technical Reports Server (NTRS)

Koster, R. D.

1999-01-01

The ability to predict precipitation several months in advance would have a significant impact on water resource management. This talk provides an overview of a project aimed at developing this prediction capability. NASA's Seasonal-to-Interannual Prediction Project (NSIPP) will generate seasonal-to-interannual sea surface temperature predictions through detailed ocean circulation modeling and will then translate these SST forecasts into forecasts of continental precipitation through the application of an atmospheric general circulation model and a "SVAT"-type land surface model. As part of the process, ocean variables (e.g., height) and land variables (e.g., soil moisture) will be updated regularly via data assimilation. The overview will include a discussion of the variability inherent in such a modeling system and will provide some quantitative estimates of the absolute upper limits of seasonal-to-interannual precipitation predictability.

On the quasi-steady aerodynamics of normal hovering flight part I: the induced power factor

PubMed Central

Nabawy, Mostafa R. A.; Crowther, William J.

2014-01-01

An analytical treatment to quantify the losses captured in the induced power factor, k, is provided for flapping wings in normal hover, including the effects of non-uniform downwash, tip losses and finite flapping amplitude. The method is based on a novel combination of actuator disc and lifting line blade theories that also takes into account the effect of advance ratio. The model has been evaluated against experimental results from the literature and qualitative agreement obtained for the effect of advance ratio on the lift coefficient of revolving wings. Comparison with quantitative experimental data for the circulation as a function of span for a fruitfly wing shows that the model is able to correctly predict the circulation shape of variation, including both the magnitude of the peak circulation and the rate of decay in circulation towards zero. An evaluation of the contributions to induced power factor in normal hover for eight insects is provided. It is also shown how Reynolds number can be accounted for in the induced power factor, and good agreement is obtained between predicted span efficiency as a function of Reynolds number and numerical results from the literature. Lastly, it is shown that for a flapping wing in hover k owing to the non-uniform downwash effect can be reduced to 1.02 using an arcsech chord distribution. For morphologically realistic wing shapes based on beta distributions, it is shown that a value of 1.07 can be achieved for a radius of first moment of wing area at 40% of wing length. PMID:24522785

On the quasi-steady aerodynamics of normal hovering flight part I: the induced power factor.

PubMed

Nabawy, Mostafa R A; Crowther, William J

2014-04-06

An analytical treatment to quantify the losses captured in the induced power factor, k, is provided for flapping wings in normal hover, including the effects of non-uniform downwash, tip losses and finite flapping amplitude. The method is based on a novel combination of actuator disc and lifting line blade theories that also takes into account the effect of advance ratio. The model has been evaluated against experimental results from the literature and qualitative agreement obtained for the effect of advance ratio on the lift coefficient of revolving wings. Comparison with quantitative experimental data for the circulation as a function of span for a fruitfly wing shows that the model is able to correctly predict the circulation shape of variation, including both the magnitude of the peak circulation and the rate of decay in circulation towards zero. An evaluation of the contributions to induced power factor in normal hover for eight insects is provided. It is also shown how Reynolds number can be accounted for in the induced power factor, and good agreement is obtained between predicted span efficiency as a function of Reynolds number and numerical results from the literature. Lastly, it is shown that for a flapping wing in hover k owing to the non-uniform downwash effect can be reduced to 1.02 using an arcsech chord distribution. For morphologically realistic wing shapes based on beta distributions, it is shown that a value of 1.07 can be achieved for a radius of first moment of wing area at 40% of wing length.

The Theory of Propellers I : Determination of the Circulation Function and the Mass Coefficient for Dual-Rotating Propellers

NASA Technical Reports Server (NTRS)

Theodorsen, Theodore

1944-01-01

Values of the circulation function have been obtained for dual-rotating propellers. Numerical values are given for four, eight, and twelve-blade dual-rotating propellers and for advance ratios from 2 to about 6. In addition, the circulation function has been determine for single-rotating propellers for the higher values of the advance ratio. The mass coefficient, another quantity of significance in propeller theory, has been introduced.

Schwarz-Christoffel Conformal Mapping based Grid Generation for Global Oceanic Circulation Models

NASA Astrophysics Data System (ADS)

Xu, Shiming

2015-04-01

We propose new grid generation algorithms for global ocean general circulation models (OGCMs). Contrary to conventional, analytical forms based dipolar or tripolar grids, the new algorithm are based on Schwarz-Christoffel (SC) conformal mapping with prescribed boundary information. While dealing with the conventional grid design problem of pole relocation, it also addresses more advanced issues of computational efficiency and the new requirements on OGCM grids arisen from the recent trend of high-resolution and multi-scale modeling. The proposed grid generation algorithm could potentially achieve the alignment of grid lines to coastlines, enhanced spatial resolution in coastal regions, and easier computational load balance. Since the generated grids are still orthogonal curvilinear, they can be readily 10 utilized in existing Bryan-Cox-Semtner type ocean models. The proposed methodology can also be applied to the grid generation task for regional ocean modeling when complex land-ocean distribution is present.

Development of the FHR advanced natural circulation analysis code and application to FHR safety analysis

DOE PAGES

Guo, Z.; Zweibaum, N.; Shao, M.; ...

2016-04-19

The University of California, Berkeley (UCB) is performing thermal hydraulics safety analysis to develop the technical basis for design and licensing of fluoride-salt-cooled, high-temperature reactors (FHRs). FHR designs investigated by UCB use natural circulation for emergency, passive decay heat removal when normal decay heat removal systems fail. The FHR advanced natural circulation analysis (FANCY) code has been developed for assessment of passive decay heat removal capability and safety analysis of these innovative system designs. The FANCY code uses a one-dimensional, semi-implicit scheme to solve for pressure-linked mass, momentum and energy conservation equations. Graph theory is used to automatically generate amore » staggered mesh for complicated pipe network systems. Heat structure models have been implemented for three types of boundary conditions (Dirichlet, Neumann and Robin boundary conditions). Heat structures can be composed of several layers of different materials, and are used for simulation of heat structure temperature distribution and heat transfer rate. Control models are used to simulate sequences of events or trips of safety systems. A proportional-integral controller is also used to automatically make thermal hydraulic systems reach desired steady state conditions. A point kinetics model is used to model reactor kinetics behavior with temperature reactivity feedback. The underlying large sparse linear systems in these models are efficiently solved by using direct and iterative solvers provided by the SuperLU code on high performance machines. Input interfaces are designed to increase the flexibility of simulation for complicated thermal hydraulic systems. In conclusion, this paper mainly focuses on the methodology used to develop the FANCY code, and safety analysis of the Mark 1 pebble-bed FHR under development at UCB is performed.« less

A cyclostrophic transformed Eulerian zonal mean model for the middle atmosphere of slowly rotating planets

NASA Astrophysics Data System (ADS)

Li, K. F.; Yao, K.; Taketa, C.; Zhang, X.; Liang, M. C.; Jiang, X.; Newman, C. E.; Tung, K. K.; Yung, Y. L.

2015-12-01

With the advance of modern computers, studies of planetary atmospheres have heavily relied on general circulation models (GCMs). Because these GCMs are usually very complicated, the simulations are sometimes difficult to understand. Here we develop a semi-analytic zonally averaged, cyclostrophic residual Eulerian model to illustrate how some of the large-scale structures of the middle atmospheric circulation can be explained qualitatively in terms of simple thermal (e.g. solar heating) and mechanical (the Eliassen-Palm flux divergence) forcings. This model is a generalization of that for fast rotating planets such as the Earth, where geostrophy dominates (Andrews and McIntyre 1987). The solution to this semi-analytic model consists of a set of modified Hough functions of the generalized Laplace's tidal equation with the cyclostrohpic terms. As examples, we apply this model to Titan and Venus. We show that the seasonal variations of the temperature and the circulation of these slowly-rotating planets can be well reproduced by adjusting only three parameters in the model: the Brunt-Väisälä bouyancy frequency, the Newtonian radiative cooling rate, and the Rayleigh friction damping rate. We will also discuss the application of this model to study the meridional transport of photochemically produced tracers that can be observed by space instruments.

A cyclostrophic transformed Eulerian zonal mean model for the middle atmosphere of slowly rotating planets

NASA Astrophysics Data System (ADS)

Li, King-Fai; Yao, Kaixuan; Taketa, Cameron; Zhang, Xi; Liang, Mao-Chang; Jiang, Xun; Newman, Claire; Tung, Ka-Kit; Yung, Yuk L.

2016-04-01

With the advance of modern computers, studies of planetary atmospheres have heavily relied on general circulation models (GCMs). Because these GCMs are usually very complicated, the simulations are sometimes difficult to understand. Here we develop a semi-analytic zonally averaged, cyclostrophic residual Eulerian model to illustrate how some of the large-scale structures of the middle atmospheric circulation can be explained qualitatively in terms of simple thermal (e.g. solar heating) and mechanical (the Eliassen-Palm flux divergence) forcings. This model is a generalization of that for fast rotating planets such as the Earth, where geostrophy dominates (Andrews and McIntyre 1987). The solution to this semi-analytic model consists of a set of modified Hough functions of the generalized Laplace's tidal equation with the cyclostrohpic terms. As an example, we apply this model to Titan. We show that the seasonal variations of the temperature and the circulation of these slowly-rotating planets can be well reproduced by adjusting only three parameters in the model: the Brunt-Väisälä bouyancy frequency, the Newtonian radiative cooling rate, and the Rayleigh friction damping rate. We will also discuss an application of this model to study the meridional transport of photochemically produced tracers that can be observed by space instruments.

Regimes of dry convection above wildfires: Idealized numerical simulations and dimensional analysis

Treesearch

Michael T. Kiefer; Matthew D. Parker; Joseph J. Charney

2009-01-01

Wildfires are capable of inducing atmospheric circulations that result predominantly from large temperature anomalies produced by the fire. The fundamental dynamics through which a forest fire and the atmosphere interact to yield different convective regimes is still not well understood. This study uses the Advanced Regional Prediction System (ARPS) model to...

Advanced glycation end products, carotid atherosclerosis, and circulating endothelial progenitor cells in patients with end-stage renal disease.

PubMed

Ueno, Hiroki; Koyama, Hidenori; Fukumoto, Shinya; Tanaka, Shinji; Shoji, Takuhito; Shoji, Tetsuo; Emoto, Masanori; Tahara, Hideki; Inaba, Masaaki; Kakiya, Ryusuke; Tabata, Tsutomu; Miyata, Toshio; Nishizawa, Yoshiki

2011-04-01

Numbers of endothelial progenitor cells (EPCs) have been shown to be decreased in subjects with end-stage renal disease (ESRD), the mechanism of which remained poorly understood. In this study, mutual association among circulating EPC levels, carotid atherosclerosis, serum pentosidine, and skin autofluorescence, a recently established noninvasive measure of advanced glycation end products accumulation, was examined in 212 ESRD subjects undergoing hemodialysis. Numbers of circulating EPCs were measured as CD34+ CD133+ CD45(low) VEGFR2+ cells and progenitor cells as CD34+ CD133+ CD45(low) fraction by flow cytometry. Skin autofluorescence was assessed by the autofluorescence reader; and serum pentosidine, by enzyme-linked immunosorbent assay. Carotid atherosclerosis was determined as intimal-medial thickness (IMT) measured by ultrasound. Circulating EPCs were significantly and inversely correlated with skin autofluorescence in ESRD subjects (R = -0.216, P = .002), but not with serum pentosidine (R = -0.079, P = .25). Circulating EPCs tended to be inversely associated with IMT (R = -0.125, P = .069). Intimal-medial thickness was also tended to be correlated positively with skin autofluorescence (R = 0.133, P = .054) and significantly with serum pentosidine (R = 0.159, P = .019). Stepwise multiple regression analyses reveal that skin autofluorescence, but not serum pentosidine and IMT, was independently associated with low circulating EPCs. Of note, skin autofluorescence was also inversely and independently associated with circulating progenitor cells. Thus, tissue accumulated, but not circulating, advanced glycation end products may be a determinant of a decrease in circulating EPCs in ESRD subjects. Copyright © 2011 Elsevier Inc. All rights reserved.

Development of the Circulation Control Flow Scheme Used in the NTF Semi-Span FAST-MAC Model

NASA Technical Reports Server (NTRS)

Jones, Gregory S.; Milholen, William E., II; Chan, David T.; Allan, Brian G.; Goodliff, Scott L.; Melton, Latunia P.; Anders, Scott G.; Carter, Melissa B.; Capone, Francis J.

2013-01-01

The application of a circulation control system for high Reynolds numbers was experimentally validated with the Fundamental Aerodynamic Subsonic Transonic Modular Active Control semi-span model in the NASA Langley National Transonic Facility. This model utilized four independent flow paths to modify the lift and thrust performance of a representative advanced transport type of wing. The design of the internal flow paths highlights the challenges associated with high Reynolds number testing in a cryogenic pressurized wind tunnel. Weight flow boundaries for the air delivery system were identified at mildly cryogenic conditions ranging from 0.1 to 10 lbm/sec. Results from the test verified system performance and identified solutions associated with the weight-flow metering system that are linked to internal perforated plates used to achieve flow uniformity at the jet exit.

A perspective on the future of physical oceanography.

PubMed

Garabato, Alberto C Naveira

2012-12-13

The ocean flows because it is forced by winds, tides and exchanges of heat and freshwater with the overlying atmosphere and cryosphere. To achieve a state where the defining properties of the ocean (such as its energy and momentum) do not continuously increase, some form of dissipation or damping is required to balance the forcing. The ocean circulation is thought to be forced primarily at the large scales characteristic of ocean basins, yet to be damped at much smaller scales down to those of centimetre-sized turbulence. For decades, physical oceanographers have sought to comprehend the fundamentals of this fractal puzzle: how the ocean circulation is driven, how it is damped and how ocean dynamics connects the very different scales of forcing and dissipation. While in the last two decades significant advances have taken place on all these three fronts, the thrust of progress has been in understanding the driving mechanisms of ocean circulation and the ocean's ensuing dynamical response, with issues surrounding dissipation receiving comparatively little attention. This choice of research priorities stems not only from logistical and technological difficulties in observing and modelling the physical processes responsible for damping the circulation, but also from the untested assumption that the evolution of the ocean's state over time scales of concern to humankind is largely independent of dissipative processes. In this article, I illustrate some of the key advances in our understanding of ocean circulation that have been achieved in the last 20 years and, based on a range of evidence, contend that the field will soon reach a stage in which uncertainties surrounding the arrest of ocean circulation will pose the main challenge to further progress. It is argued that the role of the circulation in the coupled climate system will stand as a further focal point of major advances in understanding within the next two decades, supported by the drive of physical oceanography towards a more operational enterprise by contextual factors. The basic elements that a strategy for the future must have to foster progress in these two areas are discussed, with an overarching emphasis on the promotion of curiosity-driven fundamental research against opposing external pressures and on the importance of upholding fundamental research as the apex of education in the field.

HER2 expression identifies dynamic functional states within circulating breast cancer cells.

PubMed

Jordan, Nicole Vincent; Bardia, Aditya; Wittner, Ben S; Benes, Cyril; Ligorio, Matteo; Zheng, Yu; Yu, Min; Sundaresan, Tilak K; Licausi, Joseph A; Desai, Rushil; O'Keefe, Ryan M; Ebright, Richard Y; Boukhali, Myriam; Sil, Srinjoy; Onozato, Maristela L; Iafrate, Anthony J; Kapur, Ravi; Sgroi, Dennis; Ting, David T; Toner, Mehmet; Ramaswamy, Sridhar; Haas, Wilhelm; Maheswaran, Shyamala; Haber, Daniel A

2016-09-01

Circulating tumour cells in women with advanced oestrogen-receptor (ER)-positive/human epidermal growth factor receptor 2 (HER2)-negative breast cancer acquire a HER2-positive subpopulation after multiple courses of therapy. In contrast to HER2-amplified primary breast cancer, which is highly sensitive to HER2-targeted therapy, the clinical significance of acquired HER2 heterogeneity during the evolution of metastatic breast cancer is unknown. Here we analyse circulating tumour cells from 19 women with ER + /HER2 - primary tumours, 84% of whom had acquired circulating tumour cells expressing HER2. Cultured circulating tumour cells maintain discrete HER2 + and HER2 - subpopulations: HER2 + circulating tumour cells are more proliferative but not addicted to HER2, consistent with activation of multiple signalling pathways; HER2 - circulating tumour cells show activation of Notch and DNA damage pathways, exhibiting resistance to cytotoxic chemotherapy, but sensitivity to Notch inhibition. HER2 + and HER2 - circulating tumour cells interconvert spontaneously, with cells of one phenotype producing daughters of the opposite within four cell doublings. Although HER2 + and HER2 - circulating tumour cells have comparable tumour initiating potential, differential proliferation favours the HER2 + state, while oxidative stress or cytotoxic chemotherapy enhances transition to the HER2 - phenotype. Simultaneous treatment with paclitaxel and Notch inhibitors achieves sustained suppression of tumorigenesis in orthotopic circulating tumour cell-derived tumour models. Together, these results point to distinct yet interconverting phenotypes within patient-derived circulating tumour cells, contributing to progression of breast cancer and acquisition of drug resistance.

Research on the Learning Effects of Multimedia Assisted Instruction Using Information Technology Model

ERIC Educational Resources Information Center

Chen, Chen-Yuan

2012-01-01

As technology advances, whether from the previous multi-media teaching, online teaching, or now interactive whiteboard, the various changes in both hardware and software resources as well as information are very huge. The information is quickly circulating under the changes in the old and new technology, and the new knowledge has been created.…

Intraventricular filling under increasing left ventricular wall stiffness and heart rates

NASA Astrophysics Data System (ADS)

Samaee, Milad; Lai, Hong Kuan; Schovanec, Joseph; Santhanakrishnan, Arvind; Nagueh, Sherif

2015-11-01

Heart failure with normal ejection fraction (HFNEF) is a clinical syndrome that is prevalent in over 50% of heart failure patients. HFNEF patients show increased left ventricle (LV) wall stiffness and clinical diagnosis is difficult using ejection fraction (EF) measurements. We hypothesized that filling vortex circulation strength would decrease with increasing LV stiffness irrespective of heart rate (HR). 2D PIV and hemodynamic measurements were acquired on LV physical models of varying wall stiffness under resting and exercise HRs. The LV models were comparatively tested in an in vitro flow circuit consisting of a two-element Windkessel model driven by a piston pump. The stiffer LV models were tested in comparison with the least stiff baseline model without changing pump amplitude, circuit compliance and resistance. Increasing stiffness at resting HR resulted in diminishing cardiac output without lowering EF below 50% as in HFNEF. Increasing HR to 110 bpm in addition to stiffness resulted in lowering EF to less than 50%. The circulation strength of the intraventricular filling vortex diminished with increasing stiffness and HR. The results suggest that filling vortex circulation strength could be potentially used as a surrogate measure of LV stiffness. This research was supported by the Oklahoma Center for Advancement of Science and Technology (HR14-022).

Modeling Circulation along the Vietnamese Coast Influenced by Monsoon Variability in Meteorology, River Discharge and Interactions with the Vietnamese East Sea

DTIC Science & Technology

2013-09-30

productivity. Advanced variational methods for the assimilation of satellite and in situ observations to achieve improved state estimation and subsequent...time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing and reviewing the collection...South China Sea (SCS) using the Regional Ocean Modeling System (ROMS) with Incremental Strong Constraint 4-Dimensional Variational (IS4DVAR) data

Why is the simulated climatology of tropical cyclones so sensitive to the choice of cumulus parameterization scheme in the WRF model?

NASA Astrophysics Data System (ADS)

Zhang, Chunxi; Wang, Yuqing

2018-01-01

The sensitivity of simulated tropical cyclones (TCs) to the choice of cumulus parameterization (CP) scheme in the advanced Weather Research and Forecasting Model (WRF-ARW) version 3.5 is analyzed based on ten seasonal simulations with 20-km horizontal grid spacing over the western North Pacific. Results show that the simulated frequency and intensity of TCs are very sensitive to the choice of the CP scheme. The sensitivity can be explained well by the difference in the low-level circulation in a height and sorted moisture space. By transporting moist static energy from dry to moist region, the low-level circulation is important to convective self-aggregation which is believed to be related to genesis of TC-like vortices (TCLVs) and TCs in idealized settings. The radiative and evaporative cooling associated with low-level clouds and shallow convection in dry regions is found to play a crucial role in driving the moisture-sorted low-level circulation. With shallow convection turned off in a CP scheme, relatively strong precipitation occurs frequently in dry regions. In this case, the diabatic cooling can still drive the low-level circulation but its strength is reduced and thus TCLV/TC genesis is suppressed. The inclusion of the cumulus momentum transport (CMT) in a CP scheme can considerably suppress genesis of TCLVs/TCs, while changes in the moisture-sorted low-level circulation and horizontal distribution of precipitation are trivial, indicating that the CMT modulates the TCLVs/TCs activities in the model by mechanisms other than the horizontal transport of moist static energy.

76 FR 12217 - Exempt Discretionary Program Grants (Section 5309) for Urban Circulator Systems

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-04

... redevelopment of urban spaces into walkable mixed use, high density environments. FOR FURTHER INFORMATION... development. FTA's approval to advance the Urban Circulator projects through project development and grant... urban circulators shall be required to submit information that describes the impact of the urban...

Scientific advances of the MyOcean projects underpinning the transition towards the Marine Copernicus service

NASA Astrophysics Data System (ADS)

Brasseur, Pierre

2015-04-01

The MyOcean projects supported by the European Commission period have been developed during the 2008-2015 period to build an operational service of ocean physical state and ecosystem information to intermediate and downstream users in the areas of marine safety, marine resources, marine and coastal environment and weather, climate and seasonal forecasting. The "core" information provided to users is obtained through the combination of satellite and in situ observations, eddy-resolving modelling of the global ocean and regional european seas, biochemistry, ecosystem and sea-ice modelling, and data assimilation for global to basin scale circulation. A comprehensive R&D plan was established in 2010 to ensure the collection and provision of information of best possible quality for daily estimates of the ocean state (real-time), its short-term evolution, and its history over the past (reanalyses). A service validation methodology was further developed to ensure proper scientific evaluation and routine monitoring of the accuracy of MyOcean products. In this presentation, we will present an overview of the main scientific advances achieved in MyOcean using the NEMO modelling platform, ensemble-based assimilation schemes, coupled circulation-ecosystem, sea-ice assimilative models and probabilistic methodologies for ensemble validation. We will further highlight the key areas that will require additional innovation effort to support the Marine Copernicus service evolution.

Perfusionist

MedlinePlus

... Perfusionists conduct extracorporeal circulation and ensure the safe management of physiologic functions by monitoring the necessary variables. Perfusion (extracorporeal circulation) procedures involve specialized instrumentation and/or advanced life-support techniques and may include a variety ...

TOPK is highly expressed in circulating tumor cells, enabling metastasis of prostate cancer

PubMed Central

Shi, Changhong; Hu, Peizhen; Yan, Wei; Wang, Zhe; Duan, Qiuhong; Lu, Fan; Qin, Lipeng; Lu, Tao; Xiao, Juanjuan; Wang, Yingmei; Zhu, Feng; Shao, Chen

2015-01-01

Circulating tumor cells (CTCs) are important for metastasis in prostate cancer. T-LAK cell-originated protein kinase (TOPK) is highly expressed in cancer cells. Herein, we established a xenograft animal model, isolated and cultured the CTCs, and found CTCs have significantly greater migratory capacity than parental cells. TOPK is more highly expressed in the CTCs than in parental cells and is also highly expressed in the metastatic nodules caused by CTCs in mice. Knocking down TOPK decreased the migration of CTCs both in vitro and in vivo. TOPK was modulated by the PI3K/PTEN and ERK pathways during the metastasis of prostate cancer. High levels of TOPK in the tumors of patients were correlated with advanced stages of prostate cancer, especially for high-risk patients of Gleason score≥8, PSA>20ng/ml. In summary, TOPK was speculated to be one of a potential marker and therapeutic target in advanced prostate cancer. PMID:25881543

Performance and stability analysis of gas-injection enhanced natural circulation in heavy-liquid-metal-cooled systems

NASA Astrophysics Data System (ADS)

Yoo, Yeon-Jong

The purpose of this study is to investigate the performance and stability of the gas-injection enhanced natural circulation in heavy-liquid-metal-cooled systems. The target system is STAR-LM, which is a 400-MWt-class advanced lead-cooled fast reactor under development by Argonne National Laboratory and Oregon State University. The primary loop of STAR-LM relies on natural circulation to eliminate main circulation pumps for enhancement of passive safety. To significantly increase the natural circulation flow rate for the incorporation of potential future power uprates, the injection of noncondensable gas into the coolant above the core is envisioned ("gas lift pump"). Reliance upon gas-injection enhanced natural circulation raises the concern of flow instability due to the relatively high temperature change in the reactor core and the two-phase flow condition in the riser. For this study, the one-dimensional flow field equations were applied to each flow section and the mixture models of two-phase flow, i.e., both the homogeneous and drift-flux equilibrium models were used in the two-phase region of the riser. For the stability analysis, the linear perturbation technique based on the frequency-domain approach was used by employing the Nyquist stability criterion and a numerical root search method. It has been shown that the thermal power of the STAR-LM natural circulation system could be increased from 400 up to 1152 MW with gas injection under the limiting void fraction of 0.30 and limiting coolant velocity of 2.0 m/s from the steady-state performance analysis. As the result of the linear stability analysis, it has turned out that the STAR-LM natural circulation system would be stable even with gas injection. In addition, through the parametric study, it has been found that the thermal inertia effects of solid structures such as fuel rod and heat exchanger tube should be considered in the stability analysis model. The results of this study will be a part of the optimized stable design of the gas-injection enhanced natural circulation of STAR-LM with substantially improved power level and economical competitiveness. Furthermore, combined with the parametric study, this research could contribute a guideline for the design of other similar heavy-liquid-metal-cooled natural circulation systems with gas injection.

An ocean dynamical thermostat—dominant in observations, absent in climate models

NASA Astrophysics Data System (ADS)

Coats, S.; Karnauskas, K. B.

2016-12-01

The pattern of sea surface temperature (SST) in the tropical Pacific Ocean is coupled to the Walker circulation, necessitating an understanding of how this pattern will change in response to anthropogenic radiative forcing. State-of-the-art climate models from the Coupled Model Intercomparison Project phase 5 (CMIP5) overwhelmingly project a decrease in the tropical Pacific zonal SST gradient over the coming century. This decrease in the zonal SST gradient is a response of the ocean to a weakening Walker circulation in the CMIP5 models, a consequence of the mass and energy balances of the hydrologic cycle identified by Held and Soden (2006). CMIP5 models, however, are not able to reproduce the observed increase in the zonal SST gradient between 1900-2013 C.E., which we argue to be robust using advanced statistical techniques and new observational datasets. While the observed increase in the zonal SST gradient is suggestive of the ocean dynamical thermostat mechanism of Clement et al. (1996), a strengthening Equatorial Undercurrent (EUC) also contributes to eastern equatorial Pacific cooling. Importantly, the strengthening EUC is a response of the ocean to a seasonal weakening of the Walker circulation and thus can reconcile disparate observations of changes to the atmosphere and ocean in the equatorial Pacific. CMIP5 models do not capture the magnitude of this response of the EUC to anthropogenic radiative forcing potentially because of biases in the sensitivity of the EUC to changes in zonal wind stress, like the weakening Walker circulation. Consequently, they project a continuation of the opposite to what has been observed in the real world, with potentially serious consequences for projected climate impacts that are influenced by the tropical Pacific.

Liquid Biopsy in Head and Neck Cancer: Promises and Challenges.

PubMed

Nonaka, T; Wong, D T W

2018-06-01

Head and neck cancer is the sixth most common cancer worldwide. It remains one of the leading causes of death, and its early detection is crucial. Liquid biopsy has emerged as a promising tool for detecting and monitoring the disease status of patients with early and advanced cancers. Circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), and exosomal miRNAs have received enormous attention because of their apparent clinical implications. Analyses of these circulating biomarkers have paved the way for novel therapeutic approaches and precision medicine. A growing number of reports have implicated the use of circulating biomarkers for detection, treatment planning, response monitoring, and prognosis assessment. Although these new biomarkers can provide a wide range of possible clinical applications, no validated circulating biomarkers have yet been integrated into clinical practice for head and neck cancer. In this review, we summarize the current knowledge of circulating biomarkers in this field, focusing on their feasibility, limitations, and key areas of clinical applications. We also highlight recent advances in salivary diagnostics and their potential application in head and neck cancer.

Abnormal arterial flows by a distributed model of the fetal circulation.

PubMed

van den Wijngaard, Jeroen P H M; Westerhof, Berend E; Faber, Dirk J; Ramsay, Margaret M; Westerhof, Nico; van Gemert, Martin J C

2006-11-01

Modeling the propagation of blood pressure and flow along the fetoplacental arterial tree may improve interpretation of abnormal flow velocity waveforms in fetuses. The current models, however, either do not include a wide range of gestational ages or do not account for variation in anatomical, vascular, or rheological parameters. We developed a mathematical model of the pulsating fetoumbilical arterial circulation using Womersley's oscillatory flow theory and viscoelastic arterial wall properties. Arterial flow waves are calculated at different arterial locations from which the pulsatility index (PI) can be determined. We varied blood viscosity, placental and brain resistances, placental compliance, heart rate, stiffness of the arterial wall, and length of the umbilical arteries. The PI increases in the umbilical artery and decreases in the cerebral arteries, as a result of increasing placental resistance or decreasing brain resistance. Both changes in resistance decrease the flow through the placenta. An increased arterial stiffness increases the PIs in the entire fetoplacental circulation. Blood viscosity and peripheral bed compliance have limited influence on the flow profiles. Bradycardia and tachycardia increase and decrease the PI in all arteries, respectively. Umbilical arterial length has limited influence on the PI but affects the mean arterial pressure at the placental cord insertion. The model may improve the interpretation of arterial flow pulsations and thus may advance both the understanding of pathophysiological processes and clinical management.

Coupled Regional Ocean-Atmosphere Modeling of the Mount Pinatubo Impact on the Red Sea

NASA Astrophysics Data System (ADS)

Stenchikov, G. L.; Osipov, S.

2017-12-01

The 1991 eruption of Mount Pinatubo had dramatic effects on the regional climate in the Middle East. Though acknowledged, these effects have not been thoroughly studied. To fill this gap and to advance understanding of the mechanisms that control variability in the Middle East's regional climate, we simulated the impact of the 1991 Pinatubo eruption using a regional coupled ocean-atmosphere modeling system set for the Middle East and North Africa (MENA) domain. We used the Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) framework, which couples the Weather Research and Forecasting Model (WRF) model with the Regional Oceanic Modeling System (ROMS). We modified the WRF model to account for the radiative effect of volcanic aerosols. Our coupled ocean-atmosphere simulations verified by available observations revealed strong perturbations in the energy balance of the Red Sea, which drove thermal and circulation responses. Our modeling approach allowed us to separate changes in the atmospheric circulation caused by the impact of the volcano from direct regional radiative cooling from volcanic aerosols. The atmospheric circulation effect was significantly stronger than the direct volcanic aerosols effect. We found that the Red Sea response to the Pinatubo eruption was stronger and qualitatively different from that of the global ocean system. Our results suggest that major volcanic eruptions significantly affect the climate in the Middle East and the Red Sea and should be carefully taken into account in assessments of long-term climate variability and warming trends in MENA and the Red Sea.

Bathymetric Changes Shaped by Longshore Currents on a Natural Beach

NASA Astrophysics Data System (ADS)

Reilly, W. L.; Slinn, D.; Plant, N.

2004-12-01

The goal of the project is to simulate beach morphology on time scales of hours to days. Our approach is to develop finite difference solutions from a coupled modeling system consisting of existing nearshore circulation, wave, and sediment flux models. We initialize the model with bathymetry from a dense data set north of the pier at the Field Research Facility (FRF) in Duck, NC. We integrate the model system forward in time and compare the results of the hind-cast of the beach evolution with the field observations. The model domain extends 1000 meters in the alongshore direction and 500 meters in the cross-shore direction with 5 meter grid spacing. The bathymetry is interpolated and filtered from CRAB transects. A second-degree exponential smoothing method is used to return the cross-shore beach profile near the edges of the modeled domain back to the mean alongshore profile, because the circulation model implements periodic boundary conditions in the alongshore direction. The offshore wave height and direction are taken from the 8-meter bipod at the FRF and input to the wave-model, SWAN (Spectral Wave Nearshore), with a Gaussian-shaped frequency spectrum and a directional spreading of 5 degrees. A constant depth induced wave breaking parameter of 0.73 is used. The resulting calculated wave induced force per unit surface area (gradient of the radiation stress) output from SWAN is used to drive the currents in the circulation model. The circulation model is based on the free-surface non-linear shallow water equations and uses the fourth order compact scheme to calculate spatial derivatives and a third order Adams-Bashforth time discretization scheme. Free slip, symmetry boundary conditions are applied at both the shoreline and offshore boundaries. The time averaged sediment flux is calculated at each location after one hour of circulation. The sediment flux model is based on the approach of Bagnold and includes approximations for both bed-load and suspended load. The bathymetry is then updated by computing the divergence of the time averaged sediment fluxes. The process is then repeated using the updated bathymetry in both SWAN and the circulation model. The cycle continues for a simulation of 10 hours. The results of bathymetric change vary for different time-dependent wave conditions and initial bathymetric profiles. Typical results indicate that for wave heights on the order of one meter, shoreline advancement and sandbar evolution is observed on the order of tens of centimeters.

Circulation of Heavy Ions and Their Dynamical Effects in the Magnetosphere: Recent Observations and Models

NASA Astrophysics Data System (ADS)

Kronberg, Elena A.; Ashour-Abdalla, Maha; Dandouras, Iannis; Delcourt, Dominique C.; Grigorenko, Elena E.; Kistler, Lynn M.; Kuzichev, Ilya V.; Liao, Jing; Maggiolo, Romain; Malova, Helmi V.; Orlova, Ksenia G.; Peroomian, Vahe; Shklyar, David R.; Shprits, Yuri Y.; Welling, Daniel T.; Zelenyi, Lev M.

2014-11-01

Knowledge of the ion composition in the near-Earth's magnetosphere and plasma sheet is essential for the understanding of magnetospheric processes and instabilities. The presence of heavy ions of ionospheric origin in the magnetosphere, in particular oxygen (O+), influences the plasma sheet bulk properties, current sheet (CS) thickness and its structure. It affects reconnection rates and the formation of Kelvin-Helmholtz instabilities. This has profound consequences for the global magnetospheric dynamics, including geomagnetic storms and substorm-like events. The formation and demise of the ring current and the radiation belts are also dependent on the presence of heavy ions. In this review we cover recent advances in observations and models of the circulation of heavy ions in the magnetosphere, considering sources, transport, acceleration, bulk properties, and the influence on the magnetospheric dynamics. We identify important open questions and promising avenues for future research.

Some aspects of metallic ion chemistry and dynamics in the mesosphere and thermosphere

NASA Technical Reports Server (NTRS)

Mathews, J. D.

1987-01-01

The relationship between the formation of sporadic layers of metallic ion and the dumping of these ions into the upper mesosphere is discussed in terms of the tidal wind, classical (i.e., windshear) and other more complex, perhaps highly nonlinear layer formation mechanisms, and a possible circulation mechanism for these ions. Optical, incoherent scatter radar, rocket, and satellite derived evidence for various layer formation mechanisms and for the metallic ion circulation system is reviewed. The results of simple one dimensional numerical model calculations of sporadic E and intermediate layer formation are presented along with suggestions for more advanced models of intense or blanketing sporadic E. The flux of metallic ions dumped by the tidal wind system into the mesosphere is estimated and compared with estimates of total particle flux of meteoric origin. Possible effects of the metallic ion flux and of meteoric dust on D region ion chemistry are discussed.

Regional Effects of the Mount Pinatubo Eruption on the Middle East and the Red Sea

NASA Astrophysics Data System (ADS)

Osipov, Sergey; Stenchikov, Georgiy

2017-11-01

The 1991 eruption of Mount Pinatubo had dramatic effects on the regional climate in the Middle East. Though acknowledged, these effects have not been thoroughly studied. To fill this gap and to advance understanding of the mechanisms that control variability in the Middle East's regional climate, we simulated the impact of the 1991 Pinatubo eruption using a regional coupled ocean-atmosphere modeling system set for the Middle East and North Africa (MENA) domain. We used the Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) framework, which couples the Weather Research and Forecasting Model (WRF) model with the Regional Oceanic Modeling System (ROMS). We modified the WRF model to account for the radiative effect of volcanic aerosols. Our coupled ocean-atmosphere simulations verified by available observations revealed strong perturbations in the energy balance of the Red Sea, which drove thermal and circulation responses. Our modeling approach allowed us to separate changes in the atmospheric circulation caused by the impact of the volcano from direct regional radiative cooling from volcanic aerosols. The atmospheric circulation effect was significantly stronger than the direct volcanic aerosols effect. We found that the Red Sea response to the Pinatubo eruption was stronger and qualitatively different from that of the global ocean system. Our results suggest that major volcanic eruptions significantly affect the climate in the Middle East and the Red Sea and should be carefully taken into account in assessments of long-term climate variability and warming trends in MENA and the Red Sea.

A modeling study on the Qiongzhou Strait westward current during summer

NASA Astrophysics Data System (ADS)

Bao, X.; Ren, S.

2016-02-01

The dynamic mechanism of Qiongzhou Strait westward current (QSWC) was studied using an advanced unstructured-grid finite volume coastal ocean model with high spatial resolution. The current in the Qiongzhou Strait (QS) flows westward all year round, even under southwest monsoon during summer season. Process-oriented experiments focused on wind, stratification, tide and river discharge were performed to examine the driving mechanism of the QSWC during summer. Numerical experiments results show that the QSWC is primarily caused by the tide-rectified flow. The connections between QSWC, West Guangdong coastal current (WGCC) and Gulf of Tonkin circulation (GOTC) were also evaluated. It shows that the WGCC could carry low-salinity water from the Pear River Estuary (PRE) into Gulf of Tonkin (GOT) through the QS and also contribute to the QSWC. We also examined the continuity of the coastal current system west of Guangdong based on the model experiments. It seemed that the coastal current was discontinuous when reached the QS. In addition, when QSWC was excluded in the model by closing the QS, the cyclonic circulation in the GOT still existed with reduced intensity. However, shutting down the QSWC had a great effect on modeling the salinity field in the GOT. The QS plays an important role in the water exchange between West Guangdong and GOT, therefore the QS need to be well resolved in a numerical model in order to accurately simulate the circulation system around West of Guangdong.

Final Technical Report for Department of Energy Award DE-SC0006625, “Predictability of the carbon-climate system on seasonal to decadal time scales.”

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fung, Inez

The project aims to investigate the feasibility of advancing our understanding of the carbon cycle, using a carbon-weather data assimilation system that updates the modeled carbon dioxide concentration and atmospheric circulation every six hours using CO 2 data (from the OCO 2 satellite) and weather data. At the core of the system is the DOE-NCAR-CAM5fv global circulation model coupled to the National Center for Atmospheric Research's Data Assimilation Testbed, running an ensemble of 30 models. This combination provides realistic vertical carbon dioxide gradients and conservation of dry air mass. A global four-dimensional distribution of atmospheric CO 2 concentration is produced.more » Our results show (1) that OCO 2 total precipitable water data are reliable and provide valuable uncertainty information for the OCO 2 data assimilation; and (2) that our approach is a promising method for monitoring national carbon dioxide emissions.« less

The Effect of Pitching Phase on the Vortex Circulation for a Flapping Wing During Stroke Reversal

NASA Astrophysics Data System (ADS)

Burge, Matthew; Ringuette, Matthew

2017-11-01

We study the effect of pitching-phase on the circulation behavior for the 3D flow structures produced during stroke reversal for a 2-degree-of-freedom flapping wing executing hovering kinematics. Previous research has related the choice in pitching-phase with respect to the wing rotation during stroke reversal (advanced vs. symmetric pitch-timing) to a lift peak preceding stroke reversal. However, results from experiments on the time-varying circulation contributions from the 3D vortex structures across the span produced by both rotation and pitching are lacking. The objective of this research is to quantitatively examine how the spanwise circulation of these structures is affected by the pitching-phase for several reduced pitching frequencies. We employ a scaled wing model in a glycerin-water mixture and measure the time-varying velocity using multiple planes of stereo digital particle image velocimetry. Data-plane positions along the wing span are informed by the unsteady behavior of the 3D vortex structures found in our prior flow visualization movies. Individual vortices are identified to calculate their circulation. This work is aimed at understanding how the behavior of the vortex structures created during stroke reversal vary with key motion parameters. This work is supported by the National Science Foundation, Award Number 1336548, supervised by Dr. Ronald Joslin.

Detailed Characterization of Nearshore Processes During NCEX

NASA Astrophysics Data System (ADS)

Holland, K.; Kaihatu, J. M.; Plant, N.

2004-12-01

Recent technology advances have allowed the coupling of remote sensing methods with advanced wave and circulation models to yield detailed characterizations of nearshore processes. This methodology was demonstrated as part of the Nearshore Canyon EXperiment (NCEX) in La Jolla, CA during Fall 2003. An array of high-resolution, color digital cameras was installed to monitor an alongshore distance of nearly 2 km out to depths of 25 m. This digital imagery was analyzed over the three-month period through an automated process to produce hourly estimates of wave period, wave direction, breaker height, shoreline position, sandbar location, and bathymetry at numerous locations during daylight hours. Interesting wave propagation patterns in the vicinity of the canyons were observed. In addition, directional wave spectra and swash / surf flow velocities were estimated using more computationally intensive methods. These measurements were used to provide forcing and boundary conditions for the Delft3D wave and circulation model, giving additional estimates of nearshore processes such as dissipation and rip currents. An optimal approach for coupling these remotely sensed observations to the numerical model was selected to yield accurate, but also timely characterizations. This involved assimilation of directional spectral estimates near the offshore boundary to mimic forcing conditions achieved under traditional approaches involving nested domains. Measurements of breaker heights and flow speeds were also used to adaptively tune model parameters to provide enhanced accuracy. Comparisons of model predictions and video observations show significant correlation. As compared to nesting within larger-scale and coarser resolution models, the advantages of providing boundary conditions data using remote sensing is much improved resolution and fidelity. For example, rip current development was both modeled and observed. These results indicate that this approach to data-model coupling is tenable and may be useful in near-real-time characterizations required by many applied scenarios.

Elevated circulating level of osteopontin is associated with advanced disease state of non-small cell lung cancer.

PubMed

Chang, Yoon Soo; Kim, Hyung Jung; Chang, Joon; Ahn, Chul Min; Kim, Sung Kyu; Kim, Se Kyu

2007-09-01

Osteopontin (OPN) plays important roles in tumor progression and metastasis through binding to OPN receptors such as alpha(v)beta(beta) integrin and CD44, and its overexpression in tumor is associated poor clinical outcome of NSCLC patients. Circulating OPN levels, measured by ELISA in 130 NSCLC cases that had not been treated for cancer at the time of sampling, were analyzed according to clinical, pathologic parameters and single nucleotide polymorphisms (SNPs) in the OPN gene promoter. Advanced disease states had higher circulating levels of OPN (T4 versus T1-3, N3 versus N0-2, and M1 versus M0, P=.029, .001, and .001, respectively, Kruskal-Wallis H-test), reflected by higher level of OPN in stage IV than stage I-III (P=.029, Kruskal-Wallis H-test). Among the clinical and pathological parameters including age, gender, smoking status, histologic subtypes and grade of differentiation, smoking status influences circulating OPN level showing higher level of OPN in ex-smokers than current and non-smokers (P=.038, Kruskal-Wallis H-test). Variation at nucleotide (nt) -443 of the OPN gene promoter had no influence on circulating OPN levels, however, patients with G/G at nt -156 showed higher concentrations of OPN than those with G/GG or GG/GG (P=.003, Kruskal-Wallis H-test). A patient with G/G at nt -156 was more frequently diagnosed with advanced stage (IIIB-IV) than with early stage (I-IIIA) NSCLC (P=.048, Mantel-Haenszel-test). In multivariate analysis, stage is the only independent factor influencing circulating level of OPN. Although circulating level of OPN in the patients with bone metastasis was higher than in those without bone metastasis (P=.028, Mann-Whitney U-test), there was no difference in the OPN levels between bone metastasis group and non-bone metastasis group. Given that the elevated levels of OPN is associated with advanced stages of NSCLC, elucidating OPN regulatory mechanisms may contribute to the development of a new therapeutic modality for NSCLC.

Detection of CTCs in portal vein was associated with intrahepatic metastases and prognosis in patients with advanced pancreatic cancer

PubMed Central

Liu, Xiaoyu; Li, Changyu; Li, Junhao; Yu, Tianzhu; Zhou, Guofeng; Cheng, Jiemin; Li, Guoping; Zhou, Yang; Lou, Wenhui; Wang, Xiaolin; Gong, Gaoquan; Liu, Lingxiao; Chen, Yi

2018-01-01

Pancreatic cancer is amongst the most lethal malignancies with increasing incidence and mortality worldwide. Distant metastases, especially intrahepatic metastases, is the leading cause of death for pancreatic cancer. Circulating tumor cells (CTCs) are neoplastic cells released from the primary tumor into circulation, and play critical roles in metastases of various types of cancers. Though clinical studies showed that detection of CTCs in peripheral circulation was associated with worse prognosis in patients with breast cancer and hepatocellular carcinoma, detection CTCs in peripheral blood of pancreatic cancer was still challenging due to hepatic filtration and technical limitations. Previous studies have demonstrated that CTCs could be detected in portal vein circulation in patients with pancreaticobiliary carcinoma. In the present study, taking advantage of ultrasonography-guided transhepatic puncture, we analysis CTCs in portal vein blood obtained from patients with advanced pancreatic cancer. CTCs were detected in all 29-portal vein blood of samples, and absolute numbers of circulating pancreatic cancer cells in portal vein was significantly higher than that in peripheral circulation. Furthermore, we found that CTC counts in portal vein was highly associated with intrahepatic metastases and indicated poorer prognosis in patients with advanced pancreatic cancer. Short-term expansion and in vitro drug sensitivity assay showed that CTCs derived from portal vein blood were highly resistant to several chemotherapy regimens. In summary, detection of CTCs in portal vein could be a powerful tool to stratify the risk of intrahepatic metastases of pancreatic cancer, and provided new insight into the biological feature of pancreatic cancer metastases and drug resistance. PMID:29896289

MarChem 93, The Proceedings, The 1993 Workshop on Marine Chemistry Instrumentation

DTIC Science & Technology

1994-01-01

technologies that are becom- chemical analysis, and record keeping ing available was tempered by the processes . These advances could be (largely...surface and meet the future needs of the chemical near bottom samples. oceanography research community? If not, how should they be improved? Difficulty...theoretical models where applicable (from box to embedded mixing and circulation) linking physical, biological, and chemical processes . I I I EDWARD J

Enhanced seasonal forecast skill following stratospheric sudden warmings

NASA Astrophysics Data System (ADS)

Sigmond, M.; Scinocca, J. F.; Kharin, V. V.; Shepherd, T. G.

2013-02-01

Advances in seasonal forecasting have brought widespread socio-economic benefits. However, seasonal forecast skill in the extratropics is relatively modest, prompting the seasonal forecasting community to search for additional sources of predictability. For over a decade it has been suggested that knowledge of the state of the stratosphere can act as a source of enhanced seasonal predictability; long-lived circulation anomalies in the lower stratosphere that follow stratospheric sudden warmings are associated with circulation anomalies in the troposphere that can last up to two months. Here, we show by performing retrospective ensemble model forecasts that such enhanced predictability can be realized in a dynamical seasonal forecast system with a good representation of the stratosphere. When initialized at the onset date of stratospheric sudden warmings, the model forecasts faithfully reproduce the observed mean tropospheric conditions in the months following the stratospheric sudden warmings. Compared with an equivalent set of forecasts that are not initialized during stratospheric sudden warmings, we document enhanced forecast skill for atmospheric circulation patterns, surface temperatures over northern Russia and eastern Canada and North Atlantic precipitation. We suggest that seasonal forecast systems initialized during stratospheric sudden warmings are likely to yield significantly greater forecast skill in some regions.

External forcing as a metronome for Atlantic multidecadal variability

NASA Astrophysics Data System (ADS)

Otterå, Odd Helge; Bentsen, Mats; Drange, Helge; Suo, Lingling

2010-10-01

Instrumental records, proxy data and climate modelling show that multidecadal variability is a dominant feature of North Atlantic sea-surface temperature variations, with potential impacts on regional climate. To understand the observed variability and to gauge any potential for climate predictions it is essential to identify the physical mechanisms that lead to this variability, and to explore the spatial and temporal characteristics of multidecadal variability modes. Here we use a coupled ocean-atmosphere general circulation model to show that the phasing of the multidecadal fluctuations in the North Atlantic during the past 600 years is, to a large degree, governed by changes in the external solar and volcanic forcings. We find that volcanoes play a particularly important part in the phasing of the multidecadal variability through their direct influence on tropical sea-surface temperatures, on the leading mode of northern-hemisphere atmosphere circulation and on the Atlantic thermohaline circulation. We suggest that the implications of our findings for decadal climate prediction are twofold: because volcanic eruptions cannot be predicted a decade in advance, longer-term climate predictability may prove challenging, whereas the systematic post-eruption changes in ocean and atmosphere may hold promise for shorter-term climate prediction.

The potential predictive value of circulating immune cell ratio and tumor marker in atezolizumab treated advanced non-small cell lung cancer patients.

PubMed

Zhuo, Minglei; Chen, Hanxiao; Zhang, Tianzhuo; Yang, Xue; Zhong, Jia; Wang, Yuyan; An, Tongtong; Wu, Meina; Wang, Ziping; Huang, Jing; Zhao, Jun

2018-05-04

The PD-L1 antibody atezolizumab has shown promising efficacy in patients with advanced non-small cell lung cancer. But the predictive marker of clinical benefit has not been identified. This study aimed to search for potential predictive factors in circulating blood of patients receiving atezolizumab. Ten patients diagnosed with advanced non-small cell lung cancer were enrolled in this open-label observing study. Circulating immune cells and plasma tumor markers were examined in peripheral blood from these patients before and after atezolizumab treatment respectively. Relation between changes in circulating factors and anti-tumor efficacy were analyzed. Blood routine test showed that atezolizumab therapy induced slightly elevation of white blood cells count generally. The lymphocyte ratio was increased slightly in disease controlled patients but decreased prominently in disease progressed patients in response to atezolizumab therapy. Flow cytometric analysis revealed changes in percentage of various immune cell types, including CD4+ T cell, CD8+ T cell, myeloid-derived suppressor cell, regulatory T cell and PD-1 expressing T cell after atezolizumab. Levels of plasma tumor marker CEA, CA125 and CA199 were also altered after anti-PD-L1 therapy. In comparison with baseline, the disease progressed patients showed sharp increase in tumor marker levels, while those disease controlled patients were seen with decreased regulatory T cell and myeloid-derived suppressor cell ratios. The circulating immune cell ratios and plasma tumor marker levels were related with clinical efficacy of atezolizumab therapy. These factors could be potential predictive marker for anti-PD-L1 therapy in advanced non-small cell lung cancer.

Pre-test analysis of protected loss of primary pump transients in CIRCE-HERO facility

NASA Astrophysics Data System (ADS)

Narcisi, V.; Giannetti, F.; Del Nevo, A.; Tarantino, M.; Caruso, G.

2017-11-01

In the frame of LEADER project (Lead-cooled European Advanced Demonstration Reactor), a new configuration of the steam generator for ALFRED (Advanced Lead Fast Reactor European Demonstrator) was proposed. The new concept is a super-heated steam generator, double wall bayonet tube type with leakage monitoring [1]. In order to support the new steam generator concept, in the framework of Horizon 2020 SESAME project (thermal hydraulics Simulations and Experiments for the Safety Assessment of MEtal cooled reactors), the ENEA CIRCE pool facility will be refurbished to host the HERO (Heavy liquid mEtal pRessurized water cOoled tubes) test section to investigate a bundle of seven full scale bayonet tubes in ALFRED-like thermal hydraulics conditions. The aim of this work is to verify thermo-fluid dynamic performance of HERO during the transition from nominal to natural circulation condition. The simulations have been performed with RELAP5-3D© by using the validated geometrical model of the previous CIRCE-ICE test section [2], in which the preceding heat exchanger has been replaced by the new bayonet bundle model. Several calculations have been carried out to identify thermal hydraulics performance in different steady state conditions. The previous calculations represent the starting points of transient tests aimed at investigating the operation in natural circulation. The transient tests consist of the protected loss of primary pump, obtained by reducing feed-water mass flow to simulate the activation of DHR (Decay Heat Removal) system, and of the loss of DHR function in hot conditions, where feed-water mass flow rate is absent. According to simulations, in nominal conditions, HERO bayonet bundle offers excellent thermal hydraulic behavior and, moreover, it allows the operation in natural circulation.

Use of Advanced Meteorological Model Output for Coastal Ocean Modeling in Puget Sound

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Zhaoqing; Khangaonkar, Tarang; Wang, Taiping

2011-06-01

It is a great challenge to specify meteorological forcing in estuarine and coastal circulation modeling using observed data because of the lack of complete datasets. As a result of this limitation, water temperature is often not simulated in estuarine and coastal modeling, with the assumption that density-induced currents are generally dominated by salinity gradients. However, in many situations, temperature gradients could be sufficiently large to influence the baroclinic motion. In this paper, we present an approach to simulate water temperature using outputs from advanced meteorological models. This modeling approach was applied to simulate annual variations of water temperatures of Pugetmore » Sound, a fjordal estuary in the Pacific Northwest of USA. Meteorological parameters from North American Region Re-analysis (NARR) model outputs were evaluated with comparisons to observed data at real-time meteorological stations. Model results demonstrated that NARR outputs can be used to drive coastal ocean models for realistic simulations of long-term water-temperature distributions in Puget Sound. Model results indicated that the net flux from NARR can be further improved with the additional information from real-time observations.« less

Supporting observation campaigns with high resolution modeling

NASA Astrophysics Data System (ADS)

Klocke, Daniel; Brueck, Matthias; Voigt, Aiko

2017-04-01

High resolution simulation in support of measurement campaigns offers a promising and emerging way to create large-scale context for small-scale observations of clouds and precipitation processes. As these simulation include the coupling of measured small-scale processes with the circulation, they also help to integrate the research communities from modeling and observations and allow for detailed model evaluations against dedicated observations. In connection with the measurement campaign NARVAL (August 2016 and December 2013) simulations with a grid-spacing of 2.5 km for the tropical Atlantic region (9000x3300 km), with local refinement to 1.2 km for the western part of the domain, were performed using the icosahedral non-hydrostatic (ICON) general circulation model. These simulations are again used to drive large eddy resolving simulations with the same model for selected days in the high definition clouds and precipitation for advancing climate prediction (HD(CP)2) project. The simulations are presented with the focus on selected results showing the benefit for the scientific communities doing atmospheric measurements and numerical modeling of climate and weather. Additionally, an outlook will be given on how similar simulations will support the NAWDEX measurement campaign in the North Atlantic and AC3 measurement campaign in the Arctic.

How to perform measurements in a hovering animal's wake: physical modelling of the vortex wake of the hawkmoth, Manduca sexta.

PubMed Central

Tytell, Eric D; Ellington, Charles P

2003-01-01

The vortex wake structure of the hawkmoth, Manduca sexta, was investigated using a vortex ring generator. Based on existing kinematic and morphological data, a piston and tube apparatus was constructed to produce circular vortex rings with the same size and disc loading as a hovering hawkmoth. Results show that the artificial rings were initially laminar, but developed turbulence owing to azimuthal wave instability. The initial impulse and circulation were accurately estimated for laminar rings using particle image velocimetry; after the transition to turbulence, initial circulation was generally underestimated. The underestimate for turbulent rings can be corrected if the transition time and velocity profile are accurately known, but this correction will not be feasible for experiments on real animals. It is therefore crucial that the circulation and impulse be estimated while the wake vortices are still laminar. The scaling of the ring Reynolds number suggests that flying animals of about the size of hawkmoths may be the largest animals whose wakes stay laminar for long enough to perform such measurements during hovering. Thus, at low advance ratios, they may be the largest animals for which wake circulation and impulse can be accurately measured. PMID:14561347

The influence of tropical heating displacements on the extratropical climate

NASA Technical Reports Server (NTRS)

Hou, Arthur Y.

1993-01-01

The hypothesis is advanced that a latitudinal shift in the tropical convective heating pattern can significantly alter temperatures in the extratropics. Results of a simplified general circulation model (GCM) show that the shift of a prescribed tropical heating toward the summer pole, on time scales longer than a few weeks, leads to a more intense cross-equatorial 'winter' Hadley circulation, enhanced upper-level tropical easterlies, and a slightly stronger subtropical winter jet, accompanied by warming at the winter middle and high latitudes as a result of increased dynamical heating. The indications are that there is a robust connection between the net dynamic heating in the extratropics and the implied changes in the subtropical wind shear resulting from adjustments in the Hadley circulation associated with convective heating displacements in the tropics. The implications are that (1) the low-frequency temporal variability in the Hadley circulation may play an important role in modulating wave transport in the winter extratropics, (2) the global climate may be sensitive to those processes that control deep cumulus convection in the tropics, and (3) systematic temperature biases in GCMs may be reduced by improving the tropical rainfall simulation.

Cardiac arrest: resuscitation and reperfusion.

PubMed

Patil, Kaustubha D; Halperin, Henry R; Becker, Lance B

2015-06-05

The modern treatment of cardiac arrest is an increasingly complex medical procedure with a rapidly changing array of therapeutic approaches designed to restore life to victims of sudden death. The 2 primary goals of providing artificial circulation and defibrillation to halt ventricular fibrillation remain of paramount importance for saving lives. They have undergone significant improvements in technology and dissemination into the community subsequent to their establishment 60 years ago. The evolution of artificial circulation includes efforts to optimize manual cardiopulmonary resuscitation, external mechanical cardiopulmonary resuscitation devices designed to augment circulation, and may soon advance further into the rapid deployment of specially designed internal emergency cardiopulmonary bypass devices. The development of defibrillation technologies has progressed from bulky internal defibrillators paddles applied directly to the heart, to manually controlled external defibrillators, to automatic external defibrillators that can now be obtained over-the-counter for widespread use in the community or home. But the modern treatment of cardiac arrest now involves more than merely providing circulation and defibrillation. As suggested by a 3-phase model of treatment, newer approaches targeting patients who have had a more prolonged cardiac arrest include treatment of the metabolic phase of cardiac arrest with therapeutic hypothermia, agents to treat or prevent reperfusion injury, new strategies specifically focused on pulseless electric activity, which is the presenting rhythm in at least one third of cardiac arrests, and aggressive post resuscitation care. There are discoveries at the cellular and molecular level about ischemia and reperfusion pathobiology that may be translated into future new therapies. On the near horizon is the combination of advanced cardiopulmonary bypass plus a cocktail of multiple agents targeted at restoration of normal metabolism and prevention of reperfusion injury, as this holds the promise of restoring life to many patients for whom our current therapies fail. © 2015 American Heart Association, Inc.

Advances in Time-Distance Helioseismology

NASA Technical Reports Server (NTRS)

Duvall, Thomas L., Jr.; Beck, John G.; Gizon, Laurent; Kosovichev, Alexander F.; Oegerle, William (Technical Monitor)

2002-01-01

Time-distance helioseismology is a way to measure travel times between surface locations for waves traversing the solar interior. Coupling the travel with an extensive modeling effort has proven to be a powerful tool for measuring flows and other wave speed inhomogeneities in the solar interior. Problems receiving current attention include studying the time variation of the meridional circulation and torsional oscillation and active region emergence and evolution, current results on these topics will be presented.

Vertical Distribution of Radiation Stress for Non-linear Shoaling Waves

NASA Astrophysics Data System (ADS)

Webb, B. M.; Slinn, D. N.

2004-12-01

The flux of momentum directed shoreward by an incident wave field, commonly referred to as the radiation stress, plays a significant role in nearshore circulation and, therefore, has a profound impact on the transport of pollutants, biota, and sediment in nearshore systems. Having received much attention since the seminal work of Longuet-Higgins and Stewart in the early 1960's, use of the radiation stress concept continues to be refined and evidence of its utility is widespread in literature pertaining to coastal and ocean science. A number of investigations, both numerical and analytical in nature, have used the concept of the radiation stress to derive appropriate forcing mechanisms that initiate cross-shore and longshore circulation, but typically in a depth-averaged sense due to a lack of information concerning the vertical distribution of the wave stresses. While depth-averaged nearshore circulation models are still widely used today, advancements in technology have permitted the adaptation of three-dimensional (3D) modeling techniques to study flow properties of complex nearshore circulation systems. It has been shown that the resulting circulation in these 3D models is very sensitive to the vertical distribution of the nearshore forcing, which have often been implemented as either depth-uniform or depth-linear distributions. Recently, analytical expressions describing the vertical structure of radiation stress components have appeared in the literature (see Mellor, 2003; Xia et al., 2004) but do not fully describe the magnitude and structure in the region bound by the trough and crest of non-linear, propagating waves. Utilizing a three-dimensional, non-linear, numerical model that resolves the time-dependent free surface, we present mean flow properties resulting from a simulation of Visser's (1984, 1991) laboratory experiment on uniform longshore currents. More specifically, we provide information regarding the vertical distribution of radiation stress components (Sxx and Sxy) resulting from obliquely incident, non-linear shoaling waves. Vertical profiles of the radiation stress components predicted by the numerical model are compared with published analytical solutions, expressions given by linear theory, and observations from an investigation employing second-order cnoidal wave theory.

On the use of Schwarz-Christoffel conformal mappings to the grid generation for global ocean models

NASA Astrophysics Data System (ADS)

Xu, S.; Wang, B.; Liu, J.

2015-10-01

In this article we propose two grid generation methods for global ocean general circulation models. Contrary to conventional dipolar or tripolar grids, the proposed methods are based on Schwarz-Christoffel conformal mappings that map areas with user-prescribed, irregular boundaries to those with regular boundaries (i.e., disks, slits, etc.). The first method aims at improving existing dipolar grids. Compared with existing grids, the sample grid achieves a better trade-off between the enlargement of the latitudinal-longitudinal portion and the overall smooth grid cell size transition. The second method addresses more modern and advanced grid design requirements arising from high-resolution and multi-scale ocean modeling. The generated grids could potentially achieve the alignment of grid lines to the large-scale coastlines, enhanced spatial resolution in coastal regions, and easier computational load balance. Since the grids are orthogonal curvilinear, they can be easily utilized by the majority of ocean general circulation models that are based on finite difference and require grid orthogonality. The proposed grid generation algorithms can also be applied to the grid generation for regional ocean modeling where complex land-sea distribution is present.

Simulated influences of Lake Agassiz on the climate of central North America 11,000 years ago

USGS Publications Warehouse

Hostetler, S.W.; Bartlein, P.J.; Clark, P.U.; Small, E.E.; Solomon, A.M.

2000-01-01

Eleven thousand years ago, large lakes existed in central and eastern North America along the margin of the Laurentide Ice Sheet. The large-scale North American climate at this time has been simulated with atmospheric general circulation models, but these relatively coarse global models do not resolve potentially important features of the mesoscale circulation that arise from interactions among the atmosphere, ice sheet, and proglacial lakes. Here we present simulations of the climate of central and eastern North America 11,000 years ago with a high-resolution, regional climate model nested within a general circulation model. The simulated climate is in general agreement with that inferred from palaeoecological evidence. Our experiments indicate that through mesoscale atmospheric feedbacks, the annual delivery of moisture to the Laurentide Ice Sheet was diminished at times of a large, cold Lake Agassiz relative to periods of lower lake stands. The resulting changes in the mass balance of the ice sheet may have contributed to fluctuations of the ice margin, thus affecting the routing of fresh water to the North Atlantic Ocean. A retreating ice margin during periods of high lake level may have opened an outlet for discharge of Lake Agassiz into the North Atlantic. A subsequent advance of the ice margin due to greater moisture delivery associated with a low lake level could have dammed the outlet, thereby reducing discharge to the North Atlantic. These variations may have been decisive in causing the Younger Dryas cold even.

Ensemble Kalman filter for the reconstruction of the Earth's mantle circulation

NASA Astrophysics Data System (ADS)

Bocher, Marie; Fournier, Alexandre; Coltice, Nicolas

2018-02-01

Recent advances in mantle convection modeling led to the release of a new generation of convection codes, able to self-consistently generate plate-like tectonics at their surface. Those models physically link mantle dynamics to surface tectonics. Combined with plate tectonic reconstructions, they have the potential to produce a new generation of mantle circulation models that use data assimilation methods and where uncertainties in plate tectonic reconstructions are taken into account. We provided a proof of this concept by applying a suboptimal Kalman filter to the reconstruction of mantle circulation (Bocher et al., 2016). Here, we propose to go one step further and apply the ensemble Kalman filter (EnKF) to this problem. The EnKF is a sequential Monte Carlo method particularly adapted to solve high-dimensional data assimilation problems with nonlinear dynamics. We tested the EnKF using synthetic observations consisting of surface velocity and heat flow measurements on a 2-D-spherical annulus model and compared it with the method developed previously. The EnKF performs on average better and is more stable than the former method. Less than 300 ensemble members are sufficient to reconstruct an evolution. We use covariance adaptive inflation and localization to correct for sampling errors. We show that the EnKF results are robust over a wide range of covariance localization parameters. The reconstruction is associated with an estimation of the error, and provides valuable information on where the reconstruction is to be trusted or not.

Elevated Plasma IL-6 Associates with Increased Risk of Advanced Fibrosis and Cholangiocarcinoma in Individuals Infected by Opisthorchis viverrini

PubMed Central

Sripa, Banchob; Thinkhamrop, Bandit; Mairiang, Eimorn; Laha, Thewarach; Kaewkes, Sasithorn; Sithithaworn, Paiboon; Periago, Maria Victoria; Bhudhisawasdi, Vajarabhongsa; Yonglitthipagon, Ponlapat; Mulvenna, Jason; Brindley, Paul J.; Loukas, Alex; Bethony, Jeffrey M.

2012-01-01

Opisthorchis viverrini is considered among the most important of the food-borne trematodes due to its strong association with advanced periductal fibrosis and bile duct cancer (cholangiocarcinoma). We investigated the relationship between plasma levels of Interleukin (IL)-6 and the risk of developing advanced fibrosis and bile duct cancer from chronic Opisthorchis infection. We show that IL-6 circulates in plasma at concentrations 58 times higher in individuals with advanced fibrosis than age, sex, and nearest-neighbor matched controls and 221 times higher in individuals with bile duct cancer than controls. We also observed a dose-response relationship between increasing levels of plasma IL-6 and increasing risk of advanced fibrosis and bile duct cancer; for example, in age and sex adjusted analyses, individuals with the highest quartiles of plasma IL-6 had a 19 times greater risk of developing advanced periductal fibrosis and a 150 times greater risk of developing of bile duct cancer than individuals with no detectable level of plasma IL-6. Finally, we show that a single plasma IL-6 measurement has excellent positive predictive value for the detection of both advanced bile duct fibrosis and bile duct cancer in regions with high O. viverrini transmission. These data support our hypothesis that common mechanisms drive bile duct fibrosis and bile duct tumorogenesis from chronic O. viverrini infection. Our study also adds a unique aspect to the literature on circulating levels of IL-6 as an immune marker of hepatobiliary pathology by showing that high levels of circulating IL-6 in plasma are not related to infection with O. viverrini, but to the development of the advanced and often lethal pathologies resulting from chronic O. viverrini infection. PMID:22629477

Systematic assessment of blood circulation time of functionalized upconversion nanoparticles in the chick embryo

NASA Astrophysics Data System (ADS)

Nadort, Annemarie; Liang, Liuen; Grebenik, Ekaterina; Guller, Anna; Lu, Yiqing; Qian, Yi; Goldys, Ewa; Zvyagin, Andrei

2015-12-01

Nanoparticle-based delivery of drugs and contrast agents holds great promise in cancer research, because of the increased delivery efficiency compared to `free' drugs and dyes. A versatile platform to investigate nanotechnology is the chick embryo chorioallantoic membrane tumour model, due to its availability (easy, cheap) and accessibility (interventions, imaging). In our group, we developed this model using several tumour cell lines (e.g. breast cancer, colon cancer). In addition, we have synthesized in-house silica coated photoluminescent upconversion nanoparticles with several functional groups (COOH, NH2, PEG). In this work we will present the systematic assessment of their in vivo blood circulation times. To this end, we injected chick embryos grown ex ovo with the functionalized UCNPs and obtained a small amount of blood at several time points after injection to create blood smears The UCNP signal from the blood smears was quantified using a modified inverted microscope imaging set-up. The results of this systematic study are valuable to optimize biochemistry protocols and guide nanomedicine advancement in the versatile chick embryo tumour model.

Rotor Vortex Filaments: Living on the Slipstream's Edge

NASA Technical Reports Server (NTRS)

Young, Larry A.

1997-01-01

The purpose of this paper is to gain a better understanding of rotor wake evolution in hover and axial flow by deriving an analytical solution for the time dependent behavior of vortex filament circulation and core size. This solution is applicable only for vortex filaments in the rotor far-wake. A primarily inviscid vortex/shear layer interaction (where the slipstream boundary is modeled as a shear layer) has been identified in this analytical treatment. This vortex/shear layer interaction results in decreasing, vortex filament circulation and core size with time. The inviscid vortex/shear layer interaction is shown, in a first-order treatment, to be of greater magnitude than viscous diffusion effects. The rate of contraction, and ultimate collapse, of the vortex filament core is found to be directly proportional to the rotor inflow velocity. This new insight into vortex filament decay promises to help reconcile several disparate observations made in the literature and will, hopefully, promote new advances in theoretical modeling of rotor wakes.

Advanced Technology Components for Model GTP305-2 Aircraft Auxiliary Power System.

DTIC Science & Technology

1980-02-01

minimum specific fuel consumption o A high specific power In addition these studies indicated that a turbine rotor inlet temperature of 20506F still...skirt leading edge had pulled away from the liner in areas at high metal temperatures and then formed an aerodynamic pocket for circulation and combus...cooling is required to prevent high temperature turbine inlet flow from recirculating on the rotor disk. Magnitude of the cooling flow required to

Numerical simulation of blood flow and pressure drop in the pulmonary arterial and venous circulation

PubMed Central

Qureshi, M. Umar; Vaughan, Gareth D.A.; Sainsbury, Christopher; Johnson, Martin; Peskin, Charles S.; Olufsen, Mette S.; Hill, N.A.

2014-01-01

A novel multiscale mathematical and computational model of the pulmonary circulation is presented and used to analyse both arterial and venous pressure and flow. This work is a major advance over previous studies by Olufsen and coworkers (Ottesen et al., 2003; Olufsen et al., 2012) which only considered the arterial circulation. For the first three generations of vessels within the pulmonary circulation, geometry is specified from patient-specific measurements obtained using magnetic resonance imaging (MRI). Blood flow and pressure in the larger arteries and veins are predicted using a nonlinear, cross-sectional-area-averaged system of equations for a Newtonian fluid in an elastic tube. Inflow into the main pulmonary artery is obtained from MRI measurements, while pressure entering the left atrium from the main pulmonary vein is kept constant at the normal mean value of 2 mmHg. Each terminal vessel in the network of ‘large’ arteries is connected to its corresponding terminal vein via a network of vessels representing the vascular bed of smaller arteries and veins. We develop and implement an algorithm to calculate the admittance of each vascular bed, using bifurcating structured trees and recursion. The structured-tree models take into account the geometry and material properties of the ‘smaller’ arteries and veins of radii ≥ 50µm. We study the effects on flow and pressure associated with three classes of pulmonary hypertension expressed via stiffening of larger and smaller vessels, and vascular rarefaction. The results of simulating these pathological conditions are in agreement with clinical observations, showing that the model has potential for assisting with diagnosis and treatment of circulatory diseases within the lung. PMID:24610385

Electrical Lumped Model Examination for Load Variation of Circulation System

NASA Astrophysics Data System (ADS)

Koya, Yoshiharu; Ito, Mitsuyo; Mizoshiri, Isao

Modeling and analysis of the circulation system enables the characteristic decision of circulation system in the body to be made. So, many models of circulation system have been proposed. But, they are complicated because the models include a lot of elements. Therefore, we proposed a complete circulation model as a lumped electrical circuit, which is comparatively simple. In this paper, we examine the effectiveness of the complete circulation model as a lumped electrical circuit. We use normal, angina pectoris, dilated cardiomyopathy and myocardial infarction for evaluation of the ventricular contraction function.

Usefulness of circulating free DNA for monitoring epidermal growth factor receptor mutations in advanced non-small cell lung cancer patients: a case report

PubMed Central

Gonzalez-Cao, Maria; Ramirez, Santiago Viteri; Ariza, Nuria Jordana; Balada, Ariadna; Garzón, Mónica; Teixidó, Cristina; Karachaliou, Niki; Morales-Espinosa, Daniela; Molina-Vila, Miguel Ángel; Rosell, Rafael

2016-01-01

Genomic analysis of circulating tumor DNA (ctDNA) released from cancer cells into the bloodstream has been proposed as a useful method to capture dynamic changes during the course of the disease. In particular, the ability to monitor epidermal growth factor receptor (EGFR) mutation status in cell-free circulating DNA (cfDNA) isolated from advanced non-small cell lung cancer (NSCLC) patients EGFR can help to the correct management of the disease and overcome the challenges associated with tumor heterogeneity and insufficient biopsied material to perform key molecular diagnosis. Here, we report a case of long term monitorization of EGFR mutation status in cfDNA from peripheral blood in an NSCLC patient in, with excellent correlation with clinical evolution. PMID:27826535

Simulation of seasonal cloud forcing anomalies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Randall, D.A.

1990-08-01

One useful way to classify clouds is according to the processes that generate them. There are three main cloud-formation agencies: deep convection; surface evaporation; large-scale lifting in the absence of conditional instability. Although traditionally clouds have been viewed as influencing the atmospheric general circulation primarily through the release of latent heat, the atmospheric science literature contains abundant evidence that, in reality, clouds influence the general circulation through four more or less equally important effects: interactions with the solar and terrestrial radiation fields; condensation and evaporation; precipitation; small-scale circulations within the atmosphere. The most advanced of the current generation of GCMsmore » include parameterizations of all four effects. Until recently there has been lingering skepticism, in the general circulation modeling community, that the radiative effects of clouds significantly influence the atmospheric general circulation. GCMs have provided the proof that the radiative effects of clouds are important for the general circulation of the atmosphere. An important concept in analysis of the effects of clouds on climate is the cloud radiative forcing (CRF), which is defined as the difference between the radiative flux which actually occurs in the presence of clouds, and that which would occur if the clouds were removed but the atmospheric state were otherwise unchanged. We also use the term CRF to denote warming or cooling tendencies due to cloud-radiation interactions. Cloud feedback is the change in CRF that accompanies a climate change. The present study concentrates on the planetary CRF and its response to external forcing, i.e. seasonal change.« less

Advances in Nonlinear Non-Scaling FFAGs

NASA Astrophysics Data System (ADS)

Johnstone, C.; Berz, M.; Makino, K.; Koscielniak, S.; Snopok, P.

Accelerators are playing increasingly important roles in basic science, technology, and medicine. Ultra high-intensity and high-energy (GeV) proton drivers are a critical technology for accelerator-driven sub-critical reactors (ADS) and many HEP programs (Muon Collider) but remain particularly challenging, encountering duty cycle and space-charge limits in the synchrotron and machine size concerns in the weaker-focusing cyclotrons; a 10-20 MW proton driver is not presently considered technically achievable with conventional re-circulating accelerators. One, as-yet, unexplored re-circulating accelerator, the Fixed-field Alternating Gradient or FFAG, is an attractive alternative to the other approaches to a high-power beam source. Its strong focusing optics can mitigate space charge effects and achieve higher bunch charges than are possible in a cyclotron, and a recent innovation in design has coupled stable tunes with isochronous orbits, making the FFAG capable of fixed-frequency, CW acceleration, as in the classical cyclotron but beyond their energy reach, well into the relativistic regime. This new concept has been advanced in non-scaling nonlinear FFAGs using powerful new methodologies developed for FFAG accelerator design and simulation. The machine described here has the high average current advantage and duty cycle of the cyclotron (without using broadband RF frequencies) in combination with the strong focusing, smaller losses, and energy variability that are more typical of the synchrotron. The current industrial and medical standard is a cyclotron, but a competing CW FFAG could promote a shift in this baseline. This paper reports on these new advances in FFAG accelerator technology and presents advanced modeling tools for fixed-field accelerators unique to the code COSY INFINITY.1

Fluorescence detection, enumeration and characterization of single circulating cells in vivo: technology, applications and future prospects

NASA Astrophysics Data System (ADS)

Hartmann, Carolin; Patil, Roshani; Lin, Charles P.; Niedre, Mark

2018-01-01

There are many diseases and biological processes that involve circulating cells in the bloodstream, such as cancer metastasis, immunology, reproductive medicine, and stem cell therapies. This has driven significant interest in new technologies for the study of circulating cells in small animal research models and clinically. Most currently used methods require drawing and enriching blood samples from the body, but these suffer from a number of limitations. In contrast, ‘in vivo flow cytometry’ (IVFC) refers to set of technologies that allow study of cells directly in the bloodstream of the organism in vivo. In recent years the IVFC field has grown significantly and new techniques have been developed, including fluorescence microscopy, multi-photon, photo-acoustic, and diffuse fluorescence IVFC. In this paper we review recent technical advances in IVFC, with emphasis on instrumentation, contrast mechanisms, and detection sensitivity. We also describe key applications in biomedical research, including cancer research and immunology. Last, we discuss future directions for IVFC, as well as prospects for broader adoption by the biomedical research community and translation to humans clinically.

A potential flight evaluation of an upper-surface-blowing/circulation-control-wing concept

NASA Technical Reports Server (NTRS)

Riddle, Dennis W.; Eppel, Joseph C.

1987-01-01

The technology data base for powered lift aircraft design has advanced over the last 15 years. NASA's Quiet Short Haul Research Aircraft (QSRA) has provided a flight verification of upper surface blowing (USB) technology. The A-6 Circulation Control Wing flight demonstration aricraft has provide data for circulation control wing (CCW) technology. Recent small scale wind tunnel model tests and full scale static flow turning test have shown the potential of combining USB with CCW technology. A flight research program is deemed necessary to fully explore the performance and control aspects of CCW jet substitution for the mechanical USB Coanda flap. The required hardware design would also address questions about the development of flight weight ducts and CCW jets and the engine bleed-air capabilities vs requirements. NASA's QSRA would be an optimum flight research vehicle for modification to the USB/CCW configuration. The existing QSRA data base, the design simplicity of the QSRA wing trailing edge controls, availability of engine bleed-air, and the low risk, low cost potential of the suggested program is discussed.

Fluorescence detection, enumeration and characterization of single circulating cells in vivo: technology, applications and future prospects.

PubMed

Hartmann, Carolin; Patil, Roshani; Lin, Charles P; Niedre, Mark

2017-12-14

There are many diseases and biological processes that involve circulating cells in the bloodstream, such as cancer metastasis, immunology, reproductive medicine, and stem cell therapies. This has driven significant interest in new technologies for the study of circulating cells in small animal research models and clinically. Most currently used methods require drawing and enriching blood samples from the body, but these suffer from a number of limitations. In contrast, 'in vivo flow cytometry' (IVFC) refers to set of technologies that allow study of cells directly in the bloodstream of the organism in vivo. In recent years the IVFC field has grown significantly and new techniques have been developed, including fluorescence microscopy, multi-photon, photo-acoustic, and diffuse fluorescence IVFC. In this paper we review recent technical advances in IVFC, with emphasis on instrumentation, contrast mechanisms, and detection sensitivity. We also describe key applications in biomedical research, including cancer research and immunology. Last, we discuss future directions for IVFC, as well as prospects for broader adoption by the biomedical research community and translation to humans clinically.

Proceedings of the 2004 NASA/ONR Circulation Control Workshop, Part 2

NASA Technical Reports Server (NTRS)

Jones, Gregory S. (Editor); Joslin, Ronald D. (Editor)

2005-01-01

This conference proceeding is comprised of papers that were presented at the NASA/ONR Circulation Control Workshop held 16-17 March 2004 at the Radisson-Hampton in Hampton, VA. Over two full days, 30 papers and 4 posters were presented with 110 scientists and engineers in attendance, representing 3 countries. As technological advances influence the efficiency and effectiveness of aerodynamic and hydrodynamic applications, designs, and operations, this workshop was intended to address the technologies, systems, challenges and successes specific to Coanda driven circulation control in aerodynamics and hydrodynamics. A major goal of this workshop was to determine the state-of-the-art in circulation control and to assess the future directions and applications for circulation control. The 2004 workshop addressed applications, experiments, computations, and theories related to circulation control, emphasizing fundamental physics, systems analysis, and applied research. The workshop consisted of single session oral presentations, posters, and written papers that are documented in this unclassified conference proceeding. The format of this written proceeding follows the agenda of the workshop. Each paper is followed with the presentation given at the workshop. the editors compiled brief summaries for each effort that is at the end of this proceeding. These summaries include the paper, oral presentation, and questions or comments that occurred during the workshop. The 2004 Circulation Control Workshop focused on applications including Naval vehicles (Surface and Underwater vehicles), Fixed Wing Aviation (general aviation, commercial, cargo, and business aircraft); V/STOL platforms (helicopters, military aircraft, tilt rotors); propulsion systems (propellers, jet engines, gas turbines), and ground vehicles (automotive, trucks, and other); wind turbines, and other nontraditional applications (e.g., vacuum cleaner, ceiling fan). As part of the CFD focus area of the 2004 CC Workshop, CFD practitioners were invited to compute a two-dimensional benchmark problem for which geometry, flow conditions, grids, and experimental data were available before the workshop. The purpose was to accumulate a database of simulations for a single problem using a range of CFD codes, turbulence models, and grid strategies so as to expand knowledge of model performance/requirements and guide simulation of practical CC configurations.

Continued Development and Application of Circulation Control Pneumatic Technology to Advanced Transport Aircraft

NASA Technical Reports Server (NTRS)

Englar, Robert J.

1998-01-01

Personnel of the Georgia Tech Research Institute (GTRI) Aerospace and Transportation Lab have completed a four-year grant program to develop and evaluate the pneumatic aerodynamic technology known as Circulation Control (CC) or Circulation Control Wing (CCW) for advanced transport aircraft. This pneumatic technology, which employs low-level blowing from tangential slots over round or near-round trailing edges of airfoils, greatly augments the circulation around a lifting or control surface and thus enhances the aerodynamic forces and moments generated by that surface. Two-dimensional force augmentations as high as 80 times the input blowing momentum coefficient have been recorded experimentally for these blown devices, thus providing returns of 8000% on the jet momentum expended. A further benefit is the absence of moving parts such as mechanical flaps, slats, spoilers, ailerons, elevators and rudders from these pneumatic surfaces, or the use of only very small, simple, blown aerodynamic surfaces on synergistic designs which integrate the lift, drag and control surfaces. The application of these devices to advanced aircraft can offer significant benefits in their performance, efficiency, simplicity, reliability, economic cost of operation, noise reduction, and safety of flight. To further develop and evaluate this potential, this research effort was conducted by GTRI under grant for the NASA Langley Research Center, Applied Aerodynamics Division, Subsonic Aerodynamics Branch, between June 14, 1993 and May 31, 1997.

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport.

PubMed

Villar, Emilie; Farrant, Gregory K; Follows, Michael; Garczarek, Laurence; Speich, Sabrina; Audic, Stéphane; Bittner, Lucie; Blanke, Bruno; Brum, Jennifer R; Brunet, Christophe; Casotti, Raffaella; Chase, Alison; Dolan, John R; d'Ortenzio, Fabrizio; Gattuso, Jean-Pierre; Grima, Nicolas; Guidi, Lionel; Hill, Christopher N; Jahn, Oliver; Jamet, Jean-Louis; Le Goff, Hervé; Lepoivre, Cyrille; Malviya, Shruti; Pelletier, Eric; Romagnan, Jean-Baptiste; Roux, Simon; Santini, Sébastien; Scalco, Eleonora; Schwenck, Sarah M; Tanaka, Atsuko; Testor, Pierre; Vannier, Thomas; Vincent, Flora; Zingone, Adriana; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Acinas, Silvia G; Bork, Peer; Boss, Emmanuel; de Vargas, Colomban; Gorsky, Gabriel; Ogata, Hiroyuki; Pesant, Stéphane; Sullivan, Matthew B; Sunagawa, Shinichi; Wincker, Patrick; Karsenti, Eric; Bowler, Chris; Not, Fabrice; Hingamp, Pascal; Iudicone, Daniele

2015-05-22

Agulhas rings provide the principal route for ocean waters to circulate from the Indo-Pacific to the Atlantic basin. Their influence on global ocean circulation is well known, but their role in plankton transport is largely unexplored. We show that, although the coarse taxonomic structure of plankton communities is continuous across the Agulhas choke point, South Atlantic plankton diversity is altered compared with Indian Ocean source populations. Modeling and in situ sampling of a young Agulhas ring indicate that strong vertical mixing drives complex nitrogen cycling, shaping community metabolism and biogeochemical signatures as the ring and associated plankton transit westward. The peculiar local environment inside Agulhas rings may provide a selective mechanism contributing to the limited dispersal of Indian Ocean plankton populations into the Atlantic. Copyright © 2015, American Association for the Advancement of Science.

PSA-alpha-2-macroglobulin complex is enzymatically active in the serum of patients with advanced prostate cancer and can degrade circulating peptide hormones.

PubMed

Kostova, Maya B; Brennen, William Nathaniel; Lopez, David; Anthony, Lizamma; Wang, Hao; Platz, Elizabeth; Denmeade, Samuel R

2018-08-01

Prostate cancer cells produce high levels of the serine protease Prostate-Specific Antigen (PSA). PSA is enzymatically active in the tumor microenvironment but is presumed to be enzymatically inactive in the blood due to complex formation with serum protease inhibitors α-1-antichymotrypsin and α-2-macroglobulin (A2M). PSA-A2M complexes cannot be measured by standard ELISA assays and are also rapidly cleared from the circulation. Thus the exact magnitude of PSA production by prostate cancer cells is not easily measured. The PSA complexed to A2M is unable to cleave proteins but maintains the ability to cleave small peptide substrates. Thus, in advanced prostate cancer, sufficient PSA-A2M may be in circulation to effect total A2M levels, levels of cytokines bound to A2M and hydrolyze small circulating peptide hormones. Total A2M levels in men with advanced prostate cancer and PSA levels above 1000 ng/mL were measured by ELISA and compared to controls. Additional ELISA assays were used to measure levels of IL-6 and TGF-beta which can bind to A2M. The ability of PSA-A2M complexes to hydrolyze protein and peptide substrates was analyzed ± PSA inhibitor. Enzymatic activity of PSA-A2M in serum of men with high PSA levels was also assayed. Serum A2M levels are inversely correlated with PSA levels in men with advanced prostate cancer. Il-6 Levels are significantly elevated in men with PSA >1000 ng/mL compared to controls with PSA <0.1 ng/mL. PSA-A2M complex in serum of men with PSA levels >1000 ng/mL can hydrolyze small fluorescently labeled peptide substrates but not large proteins that are PSA substrates. PSA can hydrolyze small peptide hormones like PTHrP and osteocalcin. PSA complexed to A2M retains the ability to degrade PTHrP. In advanced prostate cancer with PSA levels >1000 ng/mL, sufficient PSA-A2M is present in circulation to produce enzymatic activity against circulating small peptide hormones. Sufficient PSA is produced in advanced prostate cancer to alter total A2M levels, which can potentially alter levels of a variety of growth factors such as IL-6, TGF-beta, basic FGF, and PDGF. Alterations in levels of these cytokines and proteolytic degradation of small peptide hormones may have profound effect on host-cancer interaction. © 2018 Wiley Periodicals, Inc.

Carbon cycle instability as a cause of the late Pleistocene ice age oscillations - Modeling the asymmetric response

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saltzman, B.; Maasch, K.A.

1988-06-01

A dynamical model of the Pleistocene ice ages is presented, which incorporates many of the qualitative ideas advanced recently regarding the possible role of ocean circulation, chemistry, temperature, and productivity in regulating long-term atmospheric carbon dioxide variations. This model involves one additional term (and free parameter) beyond that included in a previous model (Saltzman and Sutera, 1987), providing the capacity for an asymmetric response. It is shown that many of the main features exhibited by the delta(O-18)-derived ice record and the Vostok core/delta(C-13)-derived carbon dioxide record in the late Pleistocene can be deduced as a free oscillatory solution of themore » model. 35 refs.« less

Three-pattern decomposition of global atmospheric circulation: part I—decomposition model and theorems

NASA Astrophysics Data System (ADS)

Hu, Shujuan; Chou, Jifan; Cheng, Jianbo

2018-04-01

In order to study the interactions between the atmospheric circulations at the middle-high and low latitudes from the global perspective, the authors proposed the mathematical definition of three-pattern circulations, i.e., horizontal, meridional and zonal circulations with which the actual atmospheric circulation is expanded. This novel decomposition method is proved to accurately describe the actual atmospheric circulation dynamics. The authors used the NCEP/NCAR reanalysis data to calculate the climate characteristics of those three-pattern circulations, and found that the decomposition model agreed with the observed results. Further dynamical analysis indicates that the decomposition model is more accurate to capture the major features of global three dimensional atmospheric motions, compared to the traditional definitions of Rossby wave, Hadley circulation and Walker circulation. The decomposition model for the first time realized the decomposition of global atmospheric circulation using three orthogonal circulations within the horizontal, meridional and zonal planes, offering new opportunities to study the large-scale interactions between the middle-high latitudes and low latitudes circulations.

Deep-water Circulation: Processes & Products (16-18 June 2010, Baiona): introduction and future challenges

NASA Astrophysics Data System (ADS)

Hernández-Molina, Francisco Javier; Stow, Dorrik A. V.; Llave, Estefanía; Rebesco, Michele; Ercilla, Gemma; van Rooij, David; Mena, Anxo; Vázquez, Juan-Tomás; Voelker, Antje H. L.

2011-12-01

Deep-water circulation is a critical part of the global conveyor belt that regulates Earth's climate. The bottom (contour)-current component of this circulation is of key significance in shaping the deep seafloor through erosion, transport, and deposition. As a result, there exists a high variety of large-scale erosional and depositional features (drifts) that together form more complex contourite depositional systems on continental slopes and rises as well as in ocean basins, generated by different water masses flowing at different depths and at different speeds either in the same or in opposite directions. Yet, the nature of these deep-water processes and the deposited contourites is still poorly understood in detail. Their ultimate decoding will undoubtedly yield information of fundamental importance to the earth and ocean sciences. The international congress Deep-water Circulation: Processes & Products was held from 16-18 June 2010 in Baiona, Spain, hosted by the University of Vigo. Volume 31(5/6) of Geo-Marine Letters is a special double issue containing 17 selected contributions from the congress, guest edited by F.J. Hernández-Molina, D.A.V. Stow, E. Llave, M. Rebesco, G. Ercilla, D. Van Rooij, A. Mena, J.-T. Vázquez and A.H.L. Voelker. The papers and discussions at the congress and the articles in this special issue provide a truly multidisciplinary perspective of interest to both academic and industrial participants, contributing to the advancement of knowledge on deep-water bottom circulation and related processes, as well as contourite sedimentation. The multidisciplinary contributions (including geomorphology, tectonics, stratigraphy, sedimentology, paleoceanography, physical oceanography, and deep-water ecology) have demonstrated that advances in paleoceanographic reconstructions and our understanding of the ocean's role in the global climate system depend largely on the feedbacks among disciplines. New insights into the link between the biota of deep-water ecosystems and bottom currents confirm the need for this field to be investigated and mapped in detail. Likewise, it is confirmed that deep-water contourites are not only of academic interest but also potential resources of economic value. Cumulatively, both the congress and the present volume serve to demonstrate that the role of bottom currents in shaping the seafloor has to date been generally underestimated, and that our understanding of such systems is still in its infancy. Future research on contourites, using new and more advanced techniques, should focus on a more detailed visualization of water-mass circulation and its variability, in order to decipher the physical processes involved and the associations between drifts and other common bedforms. Moreover, contourite facies models should be better established, including their associations with other deep-water sedimentary environments both in modern and ancient submarine domains. The rapid increase in deep-water exploration and the new deep-water technologies available to the oil industry and academic institutions will undoubtedly lead to spectacular advances in contourite research in terms of processes, morphology, sediment stacking patterns, facies, and their relationships with other deep-marine depositional systems.

Remote sensing technology research and instrumentation platform design

NASA Technical Reports Server (NTRS)

1992-01-01

An instrumented pallet concept and definition of an aircraft with performance and payload capability to meet NASA's airborne turbulent flux measurement needs for advanced multiple global climate research and field experiments is presented. The report addresses airborne measurement requirements for general circulation model sub-scale parameterization research, specifies instrumentation capable of making these measurements, and describes a preliminary support pallet design. Also, a review of aircraft types and a recommendation of a manned and an unmanned aircraft capable of meeting flux parameterization research needs is given.

Prediction of Indian Summer-Monsoon Onset Variability: A Season in Advance.

PubMed

Pradhan, Maheswar; Rao, A Suryachandra; Srivastava, Ankur; Dakate, Ashish; Salunke, Kiran; Shameera, K S

2017-10-27

Monsoon onset is an inherent transient phenomenon of Indian Summer Monsoon and it was never envisaged that this transience can be predicted at long lead times. Though onset is precipitous, its variability exhibits strong teleconnections with large scale forcing such as ENSO and IOD and hence may be predictable. Despite of the tremendous skill achieved by the state-of-the-art models in predicting such large scale processes, the prediction of monsoon onset variability by the models is still limited to just 2-3 weeks in advance. Using an objective definition of onset in a global coupled ocean-atmosphere model, it is shown that the skillful prediction of onset variability is feasible under seasonal prediction framework. The better representations/simulations of not only the large scale processes but also the synoptic and intraseasonal features during the evolution of monsoon onset are the comprehensions behind skillful simulation of monsoon onset variability. The changes observed in convection, tropospheric circulation and moisture availability prior to and after the onset are evidenced in model simulations, which resulted in high hit rate of early/delay in monsoon onset in the high resolution model.

Future projections of extreme precipitation using Advanced Weather Generator (AWE-GEN) over Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Syafrina, A. H.; Zalina, M. D.; Juneng, L.

2014-09-01

A stochastic downscaling methodology known as the Advanced Weather Generator, AWE-GEN, has been tested at four stations in Peninsular Malaysia using observations available from 1975 to 2005. The methodology involves a stochastic downscaling procedure based on a Bayesian approach. Climate statistics from a multi-model ensemble of General Circulation Model (GCM) outputs were calculated and factors of change were derived to produce the probability distribution functions (PDF). New parameters were obtained to project future climate time series. A multi-model ensemble was used in this study. The projections of extreme precipitation were based on the RCP 6.0 scenario (2081-2100). The model was able to simulate both hourly and 24-h extreme precipitation, as well as wet spell durations quite well for almost all regions. However, the performance of GCM models varies significantly in all regions showing high variability of monthly precipitation for both observed and future periods. The extreme precipitation for both hourly and 24-h seems to increase in future, while extreme of wet spells remain unchanged, up to the return periods of 10-40 years.

Predicting Coupled Ocean-Atmosphere Modes with a Climate Modeling Hierarchy -- Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michael Ghil, UCLA; Andrew W. Robertson, IRI, Columbia Univ.; Sergey Kravtsov, U. of Wisconsin, Milwaukee

The goal of the project was to determine midlatitude climate predictability associated with tropical-extratropical interactions on interannual-to-interdecadal time scales. Our strategy was to develop and test a hierarchy of climate models, bringing together large GCM-based climate models with simple fluid-dynamical coupled ocean-ice-atmosphere models, through the use of advanced probabilistic network (PN) models. PN models were used to develop a new diagnostic methodology for analyzing coupled ocean-atmosphere interactions in large climate simulations made with the NCAR Parallel Climate Model (PCM), and to make these tools user-friendly and available to other researchers. We focused on interactions between the tropics and extratropics throughmore » atmospheric teleconnections (the Hadley cell, Rossby waves and nonlinear circulation regimes) over both the North Atlantic and North Pacific, and the ocean’s thermohaline circulation (THC) in the Atlantic. We tested the hypothesis that variations in the strength of the THC alter sea surface temperatures in the tropical Atlantic, and that the latter influence the atmosphere in high latitudes through an atmospheric teleconnection, feeding back onto the THC. The PN model framework was used to mediate between the understanding gained with simplified primitive equations models and multi-century simulations made with the PCM. The project team is interdisciplinary and built on an existing synergy between atmospheric and ocean scientists at UCLA, computer scientists at UCI, and climate researchers at the IRI.« less

Longitudinal biases in the Seychelles Dome simulated by 35 ocean-atmosphere coupled general circulation models

NASA Astrophysics Data System (ADS)

Nagura, Motoki; Sasaki, Wataru; Tozuka, Tomoki; Luo, Jing-Jia; Behera, Swadhin K.; Yamagata, Toshio

2013-02-01

Seychelles Dome refers to the shallow climatological thermocline in the southwestern Indian Ocean, where ocean wave dynamics efficiently affect sea surface temperature, allowing sea surface temperature anomalies to be predicted up to 1-2 years in advance. Accurate reproduction of the dome by ocean-atmosphere coupled general circulation models (CGCMs) is essential for successful seasonal predictions in the Indian Ocean. This study examines the Seychelles Dome as simulated by 35 CGCMs, including models used in phase five of the Coupled Model Intercomparison Project (CMIP5). Among the 35 CGCMs, 14 models erroneously produce an upwelling dome in the eastern half of the basin whereas the observed Seychelles Dome is located in the southwestern tropical Indian Ocean. The annual mean Ekman pumping velocity in these models is found to be almost zero in the southern off-equatorial region. This result is inconsistent with observations, in which Ekman upwelling acts as the main cause of the Seychelles Dome. In the models reproducing an eastward-displaced dome, easterly biases are prominent along the equator in boreal summer and fall, which result in shallow thermocline biases along the Java and Sumatra coasts via Kelvin wave dynamics and a spurious upwelling dome in the region. Compared to the CMIP3 models, the CMIP5 models are even worse in simulating the dome longitudes.

Reduction of Serious Adverse Events Demanding Study Exclusion in Model Development: Extracorporeal Life Support Resuscitation of Ventricular Fibrillation Cardiac Arrest in Rats.

PubMed

Warenits, Alexandra-Maria; Sterz, Fritz; Schober, Andreas; Ettl, Florian; Magnet, Ingrid Anna Maria; Högler, Sandra; Teubenbacher, Ursula; Grassmann, Daniel; Wagner, Michael; Janata, Andreas; Weihs, Wolfgang

2016-12-01

Extracorporeal life support is a promising concept for selected patients in refractory cardiogenic shock and for advanced life support of persistent ventricular fibrillation cardiac arrest. Animal models of ventricular fibrillation cardiac arrest could help to investigate new treatment strategies for successful resuscitation. Associated procedural pitfalls in establishing a rat model of extracorporeal life support resuscitation need to be replaced, refined, reduced, and reported.Anesthetized male Sprague-Dawley rats (350-600 g) (n = 126) underwent cardiac arrest induced with a pacing catheter placed into the right ventricle via a jugular cannula. Rats were resuscitated with extracorporeal life support, mechanical ventilation, defibrillation, and medication. Catheter and cannula explantation was performed if restoration of spontaneous circulation was achieved. All observed serious adverse events (SAEs) occurring in each of the experimental phases were analyzed.Restoration of spontaneous circulation could be achieved in 68 of 126 rats (54%); SAEs were observed in 76 (60%) experiments. Experimental procedures related SAEs were 62 (82%) and avoidable human errors were 14 (18%). The most common serious adverse events were caused by insertion or explantation of the venous bypass cannula and resulted in lethal bleeding, cannula dislocation, or air embolism.Establishing an extracorporeal life support model in rats has confronted us with technical challenges. Even advancements in small animal critical care management over the years delivered by an experienced team and technical modifications were not able to totally avoid such serious adverse events. Replacement, refinement, and reduction reports of serious adverse events demanding study exclusions to avoid animal resources are missing and are presented hereby.

Understanding and Portraying the Global Atmospheric Circulation.

ERIC Educational Resources Information Center

Harrington, John, Jr.; Oliver, John E.

2000-01-01

Examines teaching models of atmospheric circulation and resultant surface pressure patterns, focusing on the three-cell model and the meaning of meridional circulation as related to middle and high latitudes. Addresses the failure of the three-cell model to explain seasonal variations in atmospheric circulation. Suggests alternative models. (CMK)

Mesenchymal-Epithelial Transition and Circulating Tumor Cells in Small Cell Lung Cancer.

PubMed

Hamilton, Gerhard; Rath, Barbara

2017-01-01

Cancer patients die of metastatic disease but knowledge regarding individual steps of this complex process of intravasation, spread and extravasation leading to secondary lesions is incomplete. Subpopulations of tumor cells are supposed to undergo an epithelial-mesenchymal transition (EMT), to enter the bloodstream and eventually establish metastases in a reverse process termed mesenchymal-epithelial transition (MET). Small cell lung cancer (SCLC) represents a unique model to study metastatic spread due to early dissemination and relapse, as well as availability of a panel of circulating cancer cell (CTC) lines recently. Additionally, chemosensitive SCLC tumor cells switch to a completely resistant phenotype during cancer recurrence. In advanced disease, SCLC patients display extremely high blood counts of CTCs in contrast to other tumors, like breast, prostate and colon cancer. Local inflammatory conditions at the primary tumor site and recruitment of macrophages seem to increase the shedding of tumor cells into the circulation in processes which may proceed independently of EMT. Since millions of cells are released by tumors into the circulation per day, analysis of a limited number of CTCs at specific time points are difficult to be related to the development of metastatic lesions which may occur approximately one year later. We have obtained a panel of SCLC CTC cell line from patients with relapsing disease, which share characteristic markers of this malignancy and a primarily epithelial phenotype with unique formation of large tumorospheres, containing quiescent and hypoxic cells. Although smoking and inflammation promote EMT, partial expression of vimentin indicates a transitional state with partial EMT in these cell lines at most. The CTC lines exhibit high expression of EpCAM , absent phosphorylation of β-catenin and background levels of Snail. Provided that these tumor cells had ever undergone EMT, here in advanced disease MET seem to have occurred already in the peripheral circulation. Alternative explanations for the expression of mesenchymal markers of the CTC lines are the heterogeneity of SCLC cells, cooperative migration or altered gene expression in response to the inflammatory tumor microenvironment allowing for tumor spread without EMT/MET.

State-of-the-art satellite laser range modeling for geodetic and oceanographic applications

NASA Technical Reports Server (NTRS)

Klosko, Steve M.; Smith, David E.

1993-01-01

Significant improvements have been made in the modeling and accuracy of Satellite Laser Range (SLR) data since the launch of LAGEOS in 1976. Some of these include: improved models of the static geopotential, solid-Earth and ocean tides, more advanced atmospheric drag models, and the adoption of the J2000 reference system with improved nutation and precession. Site positioning using SLR systems currently yield approximately 2 cm static and 5 mm/y kinematic descriptions of the geocentric location of these sites. Incorporation of a large set of observations from advanced Satellite Laser Ranging (SLR) tracking systems have directly made major contributions to the gravitational fields and in advancing the state-of-the-art in precision orbit determination. SLR is the baseline tracking system for the altimeter bearing TOPEX/Poseidon and ERS-1 satellites and thus, will play an important role in providing the Conventional Terrestrial Reference Frame for instantaneously locating the geocentric position of the ocean surface over time, in providing an unchanging range standard for altimeter range calibration, and for improving the geoid models to separate gravitational from ocean circulation signals seen in the sea surface. Nevertheless, despite the unprecedented improvements in the accuracy of the models used to support orbit reduction of laser observations, there still remain systematic unmodeled effects which limit the full exploitation of modern SLR data.

Understanding the tropical cloud feedback from an analysis of the circulation and stability regimes simulated from an upgraded multiscale modeling framework

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Kuan-Man; Cheng, Anning

As revealed from studies using conventional general circulation models (GCMs), the thermodynamic contribution to the tropical cloud feedback dominates the dynamic contribution, but these models have difficulty in simulating the subsidence regimes in the tropics. In this study, we analyze the tropical cloud feedback from a 2 K sea surface temperature (SST) perturbation experiment performed with a multiscale modeling framework (MMF). The MMF explicitly represents cloud processes using 2-D cloud-resolving models with an advanced higher-order turbulence closure in each atmospheric column of the host GCM. We sort the monthly mean cloud properties and cloud radiative effects according to circulation andmore » stability regimes. Here, we find that the regime-sorted dynamic changes dominate the thermodynamic changes in terms of the absolute magnitude. The dynamic changes in the weak subsidence regimes exhibit strong negative cloud feedback due to increases in shallow cumulus and deep clouds while those in strongly convective and moderate-to-strong subsidence regimes have opposite signs, resulting in a small contribution to cloud feedback. On the other hand, the thermodynamic changes are large due to decreases in stratocumulus clouds in the moderate-to-strong subsidence regimes with small opposite changes in the weak subsidence and strongly convective regimes, resulting in a relatively large contribution to positive cloud feedback. The dynamic and thermodynamic changes contribute equally to positive cloud feedback and are relatively insensitive to stability in the moderate-to-strong subsidence regimes. But they are sensitive to stability changes from the SST increase in convective and weak subsidence regimes. Lastly, these results have implications for interpreting cloud feedback mechanisms.« less

Understanding the tropical cloud feedback from an analysis of the circulation and stability regimes simulated from an upgraded multiscale modeling framework

DOE PAGES

Xu, Kuan-Man; Cheng, Anning

2016-11-15

As revealed from studies using conventional general circulation models (GCMs), the thermodynamic contribution to the tropical cloud feedback dominates the dynamic contribution, but these models have difficulty in simulating the subsidence regimes in the tropics. In this study, we analyze the tropical cloud feedback from a 2 K sea surface temperature (SST) perturbation experiment performed with a multiscale modeling framework (MMF). The MMF explicitly represents cloud processes using 2-D cloud-resolving models with an advanced higher-order turbulence closure in each atmospheric column of the host GCM. We sort the monthly mean cloud properties and cloud radiative effects according to circulation andmore » stability regimes. Here, we find that the regime-sorted dynamic changes dominate the thermodynamic changes in terms of the absolute magnitude. The dynamic changes in the weak subsidence regimes exhibit strong negative cloud feedback due to increases in shallow cumulus and deep clouds while those in strongly convective and moderate-to-strong subsidence regimes have opposite signs, resulting in a small contribution to cloud feedback. On the other hand, the thermodynamic changes are large due to decreases in stratocumulus clouds in the moderate-to-strong subsidence regimes with small opposite changes in the weak subsidence and strongly convective regimes, resulting in a relatively large contribution to positive cloud feedback. The dynamic and thermodynamic changes contribute equally to positive cloud feedback and are relatively insensitive to stability in the moderate-to-strong subsidence regimes. But they are sensitive to stability changes from the SST increase in convective and weak subsidence regimes. Lastly, these results have implications for interpreting cloud feedback mechanisms.« less

Experimental Investigations in a Reactor Cavity Cooling System with Advanced Instrumentation for the Study of Instabilities, Oscillations, and Transients

NASA Astrophysics Data System (ADS)

Tompkins, Casey A.

A research team at University of Wisconsin - Madison designed and constructed a 1/4 height scaled experimental facility to study two-phase natural circulation cooling in a water-based reactor cavity cooling system (WRCCS) for decay heat removal in an advanced high temperature reactor. The facility is capable of natural circulation operation scaled for simulated decay heat removal (up to 28.5 kW m-2 (45 kW) input power, which is equivalent to 14.25 kW m-2 (6.8 MW) at full scale) and pressurized up to 2 bar. The UW-WRCCS facility has been used to study instabilities and oscillations observed during natural circulation flow due to evaporation of the water inventory. During two-phase operation, the system exhibits flow oscillations and excursions, which cause thermal oscillations in the structure. This can cause degradation in the mechanical structure at welds and limit heat transfer to the coolant. The facility is equipped with wire mesh sensors (WMS) that enable high-resolution measurements of the void fraction and steam velocities in order to study the instability's and oscillation's growth and decay during transient operation. Multiple perturbations to the system's operating point in pressure and inlet throttling have shown that the oscillatory behavior present under normal two-phase operating conditions can be damped and removed. Furthermore, with steady-state modeling it was discovered that a flow regime transition instability is the primary cause of oscillations in the UW-WRCCS facility under unperturbed conditions and that proper orifice selection can move the system into a stable operating regime.

Variability, trends, and predictability of seasonal sea ice retreat and advance in the Chukchi Sea

NASA Astrophysics Data System (ADS)

Serreze, Mark C.; Crawford, Alex D.; Stroeve, Julienne C.; Barrett, Andrew P.; Woodgate, Rebecca A.

2016-10-01

As assessed over the period 1979-2014, the date that sea ice retreats to the shelf break (150 m contour) of the Chukchi Sea has a linear trend of -0.7 days per year. The date of seasonal ice advance back to the shelf break has a steeper trend of about +1.5 days per year, together yielding an increase in the open water period of 80 days. Based on detrended time series, we ask how interannual variability in advance and retreat dates relate to various forcing parameters including radiation fluxes, temperature and wind (from numerical reanalyses), and the oceanic heat inflow through the Bering Strait (from in situ moorings). Of all variables considered, the retreat date is most strongly correlated (r ˜ 0.8) with the April through June Bering Strait heat inflow. After testing a suite of statistical linear models using several potential predictors, the best model for predicting the date of retreat includes only the April through June Bering Strait heat inflow, which explains 68% of retreat date variance. The best model predicting the ice advance date includes the July through September inflow and the date of retreat, explaining 67% of advance date variance. We address these relationships by discussing heat balances within the Chukchi Sea, and the hypothesis of oceanic heat transport triggering ocean heat uptake and ice-albedo feedback. Developing an operational prediction scheme for seasonal retreat and advance would require timely acquisition of Bering Strait heat inflow data. Predictability will likely always be limited by the chaotic nature of atmospheric circulation patterns.

Relationship of Advanced Glycation End Products With Cardiovascular Disease in Menopausal Women

PubMed Central

Pertynska-Marczewska, Magdalena

2015-01-01

Cardiovascular disease (CVD) represents the most significant cause of death in postmenopausal women. Advanced glycation end products (AGEs) are formed by nonenzymatic modification of proteins, lipids, and nucleic acids by glucose. This review focuses on the contribution of AGEs and their receptors to the development of CVD in menopause. Advanced glycation end products circulate and activate the proinflammatory endothelial cell surface receptor called RAGE, bind to the extracellular matrix of the cardiovascular system, or bind to the circulating anti-inflammatory soluble form of RAGE (sRAGE). Data emerging from human and animal studies suggest that AGEs and both receptors (RAGE and sRAGE) are implicated in the pathophysiology of CVD. Particular emphasis has been given to the role of AGE–RAGE axis in oxidative stress, inflammation, endothelial cell toxicity, and progression of atherosclerosis in menopause. Data accruing from human and animal studies suggest that RAGE expression level and circulating sRAGE level are associated with estradiol and are correlated with CVD risk factors, such as adiposity, dyslipidemia, insulin resistance, diabetes, and metabolic syndrome. By recognizing the impact of AGEs on atherosclerosis, pharmacological strategies targeting the AGE–RAGE pathway hold therapeutic potential for CVD in menopausal women. PMID:25228634

Relationship of Advanced Glycation End Products With Cardiovascular Disease in Menopausal Women.

PubMed

Pertynska-Marczewska, Magdalena; Merhi, Zaher

2015-07-01

Cardiovascular disease (CVD) represents the most significant cause of death in postmenopausal women. Advanced glycation end products (AGEs) are formed by nonenzymatic modification of proteins, lipids, and nucleic acids by glucose. This review focuses on the contribution of AGEs and their receptors to the development of CVD in menopause. Advanced glycation end products circulate and activate the proinflammatory endothelial cell surface receptor called RAGE, bind to the extracellular matrix of the cardiovascular system, or bind to the circulating anti-inflammatory soluble form of RAGE (sRAGE). Data emerging from human and animal studies suggest that AGEs and both receptors (RAGE and sRAGE) are implicated in the pathophysiology of CVD. Particular emphasis has been given to the role of AGE-RAGE axis in oxidative stress, inflammation, endothelial cell toxicity, and progression of atherosclerosis in menopause. Data accruing from human and animal studies suggest that RAGE expression level and circulating sRAGE level are associated with estradiol and are correlated with CVD risk factors, such as adiposity, dyslipidemia, insulin resistance, diabetes, and metabolic syndrome. By recognizing the impact of AGEs on atherosclerosis, pharmacological strategies targeting the AGE-RAGE pathway hold therapeutic potential for CVD in menopausal women. © The Author(s) 2014.

Pneumatic Flap Performance for a 2D Circulation Control Airfoil, Steady and Pulsed

NASA Technical Reports Server (NTRS)

Jones, Gregory S.

2005-01-01

Circulation Control technologies have been around for 65 years, and have been successfully demonstrated in laboratories and flight vehicles alike, yet there are few production aircraft flying today that implement these advances. Circulation Control techniques may have been overlooked due to perceived unfavorable trade offs of mass flow, pitching moment, cruise drag, noise, etc. Improvements in certain aspects of Circulation Control technology are the focus of this paper. This report will describe airfoil and blown high lift concepts that also address cruise drag reduction and reductions in mass flow through the use of pulsed pneumatic blowing on a Coanda surface. Pulsed concepts demonstrate significant reductions in mass flow requirements cor Circulation Control, as well as cruise drag concepts that equal or exceed conventional airfoil systems.

Climate of Earth-Like Planets With and Without Ocean Heat Transport Orbiting a Range of M and K Stars

NASA Technical Reports Server (NTRS)

Kiang, N. Y.; Jablonski, Emma R.; Way, Michael J.; Del Genio, Anthony; Roberge, Aki

2015-01-01

The mean surface temperature of a planet is now acknowledged as insufficient to surmise its full potential habitability. Advancing our understanding requires exploration with 3D general circulation models (GCMs), which can take into account how gradients and fluxes across a planet's surface influence the distribution of heat, clouds, and the potential for heterogeneous distribution of liquid water. Here we present 3D GCM simulations of the effects of alternative stellar spectra, instellation, model resolution, and ocean heat transport, on the simulated distribution of heat and moisture of an Earth-like planet (ELP).

In vitro models of the metastatic cascade: from local invasion to extravasation

PubMed Central

Bersini, S.; Jeon, J.S.; Moretti, Matteo; Kamm, R.D.

2014-01-01

A crucial event in the metastatic cascade is the extravasation of circulating cancer cells from blood capillaries to the surrounding tissues. The past 5 years have been characterized by a significant evolution in the development of in vitro extravasation models, which moved from traditional transmigration chambers to more sophisticated microfluidic devices, enabling the study of complex cell–cell and cell–matrix interactions in multicellular, controlled environments. These advanced assays could be applied to screen easily and rapidly a broad spectrum of molecules inhibiting cancer cell endothelial adhesion and extravasation, thus contributing to the design of more focused in vivo tests. PMID:24361339

Verification of RELAP5-3D code in natural circulation loop as function of the initial water inventory

NASA Astrophysics Data System (ADS)

Bertani, C.; Falcone, N.; Bersano, A.; Caramello, M.; Matsushita, T.; De Salve, M.; Panella, B.

2017-11-01

High safety and reliability of advanced nuclear reactors, Generation IV and Small Modular Reactors (SMR), have a crucial role in the acceptance of these new plants design. Among all the possible safety systems, particular efforts are dedicated to the study of passive systems because they rely on simple physical principles like natural circulation, without the need of external energy source to operate. Taking inspiration from the second Decay Heat Removal system (DHR2) of ALFRED, the European Generation IV demonstrator of the fast lead cooled reactor, an experimental facility has been built at the Energy Department of Politecnico di Torino (PROPHET facility) to study single and two-phase flow natural circulation. The facility behavior is simulated using the thermal-hydraulic system code RELAP5-3D, which is widely used in nuclear applications. In this paper, the effect of the initial water inventory on natural circulation is analyzed. The experimental time behaviors of temperatures and pressures are analyzed. The experimental matrix ranges between 69 % and 93%; the influence of the opposite effects related to the increase of the volume available for the expansion and the pressure raise due to phase change is discussed. Simulations of the experimental tests are carried out by using a 1D model at constant heat power and fixed liquid and air mass; the code predictions are compared with experimental results. Two typical responses are observed: subcooled or two phase saturated circulation. The steady state pressure is a strong function of liquid and air mass inventory. The numerical results show that, at low initial liquid mass inventory, the natural circulation is not stable but pulsated.

Seasonal circulation patterns of the Yellow and East China Seas derived from satellite-tracked drifter trajectories and hydrographic observations

NASA Astrophysics Data System (ADS)

Lie, Heung-Jae; Cho, Cheol-Ho

2016-08-01

We investigated seasonal circulation patterns of the Yellow and East China Seas (YECS), by reviewing previous works on the circulation and its dominant currents, and taking into account newly-compiled trajectories of satellite-tracked drifters collected between the 1980s and 2000s. The circulation patterns suggested before the 1990s can be categorized into two groups, depending on the identified origin of the Tsushima Warm Current in the Korea-Tsushima Straits: (i) branching from the Kuroshio southwest of Kyushu, or (ii) northeastward continuation of the Taiwan Strait throughflow. The branching of the Kuroshio southwest of Kyushu and northeast of Taiwan was clearly evidenced by current measurements and concurrent hydrographic surveys. However, there is still no clear evidence for the northeastward pathway of Taiwan Strait throughflow across the mid-shelf area of the East China Sea. Target-oriented surveys in the 1990s and 2000s employing advanced instruments, such as drifter tracking and acoustic Doppler current profiler measurements, now provide decisive proof of the clockwise rounding of the Cheju Warm Current around Jeju-do throughout the year, of the northeastward extension of Changjiang discharge in summer, and of the presence of the Yellow Sea Warm Current only in winter. Thus, both coastal currents in shallow water and secondary branch currents of the Kuroshio (such as the Yellow Sea Warm Current) are found to significantly change from winter to summer. To better present the basic pattern of YECS circulation and its seasonality, we have constructed seasonal circulations patterns, based on review results, on the newly-compiled drifter trajectories, and on hydrographic observations. Further investigations should be carried out in future, with support of comprehensive current measurements on shelf areas and through elaborate numerical modeling.

SOX17 promoter methylation in plasma circulating tumor DNA of patients with non-small cell lung cancer.

PubMed

Balgkouranidou, Ioanna; Chimonidou, Maria; Milaki, Georgia; Tsaroucha, Emily; Kakolyris, Stylianos; Georgoulias, Vasilis; Lianidou, Evi

2016-08-01

SOX17 belongs to the high-mobility group-box transcription factor superfamily and down-regulates the Wnt pathway. The aim of our study was to evaluate the prognostic significance of SOX17 promoter methylation in circulating tumor DNA (ctDNA) in plasma of non-small cell lung cancer (NSCLC) patients. We examined the methylation status of SOX17 promoter in 57 operable NSCLC primary tumors and paired adjacent non-cancerous tissues and in ctDNA isolated from 48 corresponding plasma samples as well as in plasma from 74 patients with advanced NSCLC and 49 healthy individuals. SOX17 promoter methylation was examined by Methylation Specific PCR (MSP). In operable NSCLC, SOX17 promoter was fully methylated in primary tumors (57/57, 100%), and in corresponding ctDNA (27/48, 56.2%) while it was detected in only 1/49 (2.0%) healthy individuals. In advanced NSCLC, SOX17 promoter was methylated in ctDNA in 27/74 (36.4%) patients and OS was significantly different in favor of patients with non-methylated SOX17 promoter (p=0.012). Multivariate analysis revealed that SOX17 promoter methylation in ctDNA was an independent prognostic factor associated with OS in patients with advanced but not operable NSCLC. Our results show that SOX17 promoter is highly methylated in primary tumors and in corresponding plasma samples both in operable and advanced NSCLC. In the advanced setting, SOX17 promoter methylation in plasma ctDNA has a statistical significant influence on NSCLC patient's survival time. Detection of SOX17 promoter methylation in plasma provides prognostic information and merits to be further evaluated as a circulating tumor biomarker in patients with operable and advanced NSCLC.

Numerical modeling of late Glacial Laurentide advance of ice across Hudson Strait: Insights into terrestrial and marine geology, mass balance, and calving flux

USGS Publications Warehouse

Pfeffer, W.T.; Dyurgerov, M.; Kaplan, M.; Dwyer, J.; Sassolas, C.; Jennings, A.; Raup, B.; Manley, W.

1997-01-01

A time-dependent finite element model was used to reconstruct the advance of ice from a late Glacial dome on northern Quebec/Labrador across Hudson Strait to Meta Incognita Peninsula (Baffin Island) and subsequently to the 9.9-9.6 ka 14C Gold Cove position on Hall Peninsula. Terrestrial geological and geophysical information from Quebec and Labrador was used to constrain initial and boundary conditions, and the model results are compared with terrestrial geological information from Baffin Island and considered in the context of the marine event DC-0 and the Younger Dryas cooling. We conclude that advance across Hudson Strait from Ungava Bay to Baffin Island is possible using realistic glacier physics under a variety of reasonable boundary conditions. Production of ice flux from a dome centered on northeastern Quebec and Labrador sufficient to deliver geologically inferred ice thickness at Gold Cove (Hall Peninsula) appears to require extensive penetration of sliding south from Ungava Bay. The discharge of ice into the ocean associated with advance and retreat across Hudson Strait does not peak at a time coincident with the start of the Younger Dryas and is less than minimum values proposed to influence North Atlantic thermohaline circulation; nevertheless, a significant fraction of freshwater input to the North Atlantic may have been provided abruptly and at a critical time by this event.

Advances in the mechanisms and early warning indicators of the postoperative cognitive dysfunction after the extracorporeal circulation.

PubMed

Liu, Chao; Han, Jian-ge

2015-02-01

The high incidence of postoperative cognitive dysfunction (POCD) after extracorporeal circulation has seriously affected the prognosis and quality of life. Its mechanism may involve the inflammatory response and oxidative stress,the excessive phosphorylation of tau protein, the decreased blood volume and oxygen in the cerebral cortex. Appropriate early warning indicators of POCD after the extracorporeal circulation should be chosen to facilitate the cross validation of the results obtained different technical approaches and thus promote the early diagnosis and treatment of POCD.

Three-pattern decomposition of global atmospheric circulation: part II—dynamical equations of horizontal, meridional and zonal circulations

NASA Astrophysics Data System (ADS)

Hu, Shujuan; Cheng, Jianbo; Xu, Ming; Chou, Jifan

2018-04-01

The three-pattern decomposition of global atmospheric circulation (TPDGAC) partitions three-dimensional (3D) atmospheric circulation into horizontal, meridional and zonal components to study the 3D structures of global atmospheric circulation. This paper incorporates the three-pattern decomposition model (TPDM) into primitive equations of atmospheric dynamics and establishes a new set of dynamical equations of the horizontal, meridional and zonal circulations in which the operator properties are studied and energy conservation laws are preserved, as in the primitive equations. The physical significance of the newly established equations is demonstrated. Our findings reveal that the new equations are essentially the 3D vorticity equations of atmosphere and that the time evolution rules of the horizontal, meridional and zonal circulations can be described from the perspective of 3D vorticity evolution. The new set of dynamical equations includes decomposed expressions that can be used to explore the source terms of large-scale atmospheric circulation variations. A simplified model is presented to demonstrate the potential applications of the new equations for studying the dynamics of the Rossby, Hadley and Walker circulations. The model shows that the horizontal air temperature anomaly gradient (ATAG) induces changes in meridional and zonal circulations and promotes the baroclinic evolution of the horizontal circulation. The simplified model also indicates that the absolute vorticity of the horizontal circulation is not conserved, and its changes can be described by changes in the vertical vorticities of the meridional and zonal circulations. Moreover, the thermodynamic equation shows that the induced meridional and zonal circulations and advection transport by the horizontal circulation in turn cause a redistribution of the air temperature. The simplified model reveals the fundamental rules between the evolution of the air temperature and the horizontal, meridional and zonal components of global atmospheric circulation.

Liquid Biopsy in Lung Cancer: A Perspective From Members of the Pulmonary Pathology Society.

PubMed

Sholl, Lynette M; Aisner, Dara L; Allen, Timothy Craig; Beasley, Mary Beth; Cagle, Philip T; Capelozzi, Vera L; Dacic, Sanja; Hariri, Lida P; Kerr, Keith M; Lantuejoul, Sylvie; Mino-Kenudson, Mari; Raparia, Kirtee; Rekhtman, Natasha; Roy-Chowdhuri, Sinchita; Thunnissen, Eric; Tsao, Ming; Vivero, Marina; Yatabe, Yasushi

2016-08-01

Liquid biopsy has received extensive media coverage and has been called the holy grail of cancer detection. Attempts at circulating tumor cell and genetic material capture have been progressing for several years, and recent financially and technically feasible improvements of cell capture devices, plasma isolation techniques, and highly sensitive polymerase chain reaction- and sequencing-based methods have advanced the possibility of liquid biopsy of solid tumors. Although practical use of circulating RNA-based testing has been hindered by the need to fractionate blood to enrich for RNAs, the detection of circulating tumor cells has profited from advances in cell capture technology. In fact, the US Food and Drug Administration has approved one circulating tumor cell selection platform, the CellSearch System. Although the use of liquid biopsy in a patient population with a genomically defined solid tumor may potentially be clinically useful, it currently does not supersede conventional pretreatment tissue diagnosis of lung cancer. Liquid biopsy has not been validated for lung cancer diagnosis, and its lower sensitivity could lead to significant diagnostic delay if liquid biopsy were to be used in lieu of tissue biopsy. Ultimately, notwithstanding the enthusiasm encompassing liquid biopsy, its clinical utility remains unproven.

Using a Gravity Model to Predict Circulation in a Public Library System.

ERIC Educational Resources Information Center

Ottensmann, John R.

1995-01-01

Describes the development of a gravity model based upon principles of spatial interaction to predict the circulation of libraries in the Indianapolis-Marion County Public Library (Indiana). The model effectively predicted past circulation figures and was tested by predicting future library circulation, particularly for a new branch library.…

Weakening of tropical Pacific atmospheric circulation due to anthropogenic forcing

NASA Astrophysics Data System (ADS)

Vecchi, Gabriel A.; Soden, Brian J.; Wittenberg, Andrew T.; Held, Isaac M.; Leetmaa, Ants; Harrison, Matthew J.

2006-05-01

Since the mid-nineteenth century the Earth's surface has warmed, and models indicate that human activities have caused part of the warming by altering the radiative balance of the atmosphere. Simple theories suggest that global warming will reduce the strength of the mean tropical atmospheric circulation. An important aspect of this tropical circulation is a large-scale zonal (east-west) overturning of air across the equatorial Pacific Ocean-driven by convection to the west and subsidence to the east-known as the Walker circulation. Here we explore changes in tropical Pacific circulation since the mid-nineteenth century using observations and a suite of global climate model experiments. Observed Indo-Pacific sea level pressure reveals a weakening of the Walker circulation. The size of this trend is consistent with theoretical predictions, is accurately reproduced by climate model simulations and, within the climate models, is largely due to anthropogenic forcing. The climate model indicates that the weakened surface winds have altered the thermal structure and circulation of the tropical Pacific Ocean. These results support model projections of further weakening of tropical atmospheric circulation during the twenty-first century.

Advanced modeling of nitrogen oxide emissions in circulating fluidized bed combustors: Parametric study of coal combustion and nitrogen compound chemistries

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kilpinen, P.; Kallio, S.; Hupa, M.

1999-07-01

This paper describes work-in-progress aimed at developing an emission model for circulating fluidized bed combustors using detailed homogeneous and heterogeneous chemical kinetics. The main emphasis is on nitrogen oxides (NO{sub x}, N{sub 2}O) but also unburned gases (CO, C{sub x}H{sub y}) and sulfur dioxide (SO{sub 2}) will be investigated in the long run. The hydrodynamics is described by a 1.5-dimensional model where the riser is divided into three regions: a dense bubbling bed at the bottom, a vigorously mixed splash zone, and a transport zone. The two latter zones are horizontally split into a core region and an annular region.more » The solids circulation rate is calculated from the known solids inventory and the pressure and mass balances over the entire circulation loop. The solids are divided into classes according to size and type or particle. The model assumes instantaneous fuel devolatilization at the bottom and an even distribution of volatiles in the suspension phase of the dense bed. For addition of secondary air, a complete penetration and an instantaneous mixing with the combustor gases in the core region is assumed. The temperature distribution is assumed to be known, and no energy balance is solved. A comprehensive kinetic scheme of about 300 elementary gas-phase reactions is used to describe the homogeneous oxidation of the volatiles including both hydrocarbon and volatile-nitrogen components (NH{sub 3}, HCN). Heterogeneous char combustion to CO and CO{sub 2}, and char-nitrogen conversion to NO, N{sub 2}O, and N{sub 2} are described by a single particle model that includes 15 reaction steps given in the form of 6 net reaction paths. In the paper, the model is briefly described. A special emphasis is put on the evaluation of chemistry submodels. Modeling results on nitrogen oxides' formation are compared with measured concentration profiles in a 12 MW CFBC riser from literature. The importance of accurate chemistry description on predictions is illustrated by comparing modeling results using detailed kinetics to those obtained when hydrocarbon and volatile-nitrogen oxidation are described with empirical, global kinetic rate expressions from literature. Submodels that need further improvements are discussed.« less

Single-cell mRNA profiling reveals transcriptional heterogeneity among pancreatic circulating tumour cells.

PubMed

Lapin, Morten; Tjensvoll, Kjersti; Oltedal, Satu; Javle, Milind; Smaaland, Rune; Gilje, Bjørnar; Nordgård, Oddmund

2017-05-31

Single-cell mRNA profiling of circulating tumour cells may contribute to a better understanding of the biology of these cells and their role in the metastatic process. In addition, such analyses may reveal new knowledge about the mechanisms underlying chemotherapy resistance and tumour progression in patients with cancer. Single circulating tumour cells were isolated from patients with locally advanced or metastatic pancreatic cancer with immuno-magnetic depletion and immuno-fluorescence microscopy. mRNA expression was analysed with single-cell multiplex RT-qPCR. Hierarchical clustering and principal component analysis were performed to identify expression patterns. Circulating tumour cells were detected in 33 of 56 (59%) examined blood samples. Single-cell mRNA profiling of intact isolated circulating tumour cells revealed both epithelial-like and mesenchymal-like subpopulations, which were distinct from leucocytes. The profiled circulating tumour cells also expressed elevated levels of stem cell markers, and the extracellular matrix protein, SPARC. The expression of SPARC might correspond to an epithelial-mesenchymal transition in pancreatic circulating tumour cells. The analysis of single pancreatic circulating tumour cells identified distinct subpopulations and revealed elevated expression of transcripts relevant to the dissemination of circulating tumour cells to distant organ sites.

Fluorescence detection, enumeration and characterization of single circulating cells in vivo: technology, applications and future prospects.

PubMed

Hartmann, Carolin; Patil, Roshani; Lin, Charles P; Niedre, Mark J

2017-11-08

There are many diseases and biological processes that involve circulating cells in the bloodstream, such as cancer metastasis, immune reaction/inflammation, reproductive medicine, and stem cell therapies. This has driven significant interest in new technologies for the study of circulating cells in small animal research models and clinically. Most currently used methods require drawing and enriching blood samples from the body, but these suffer from a number of limitations. In contrast, "in vivo flow cytometry" (IVFC) refers to set of technologies that allow study of cells directly in the bloodstream of the organism in vivo. In recent years the IVFC field has grown significantly and new techniques have been developed, including fluorescence microscopy, multi-photon, photo-acoustic, and diffuse fluorescence IVFC. In this paper we review recent technical advances in IVFC, with emphasis on instrumentation, contrast mechanisms, and detection sensitivity. We also describe key applications in biomedical research, including cancer research and immunology. Last, we discuss future directions for IVFC, as well as prospects for broader adoption by the biomedical research community and translation to humans clinically. © 2017 Institute of Physics and Engineering in Medicine.

Exploring exomoon atmospheres with an idealized general circulation model

NASA Astrophysics Data System (ADS)

Haqq-Misra, Jacob; Heller, René

2018-06-01

Recent studies have shown that large exomoons can form in the accretion disks around super-Jovian extrasolar planets. These planets are abundant at about 1 AU from Sun-like stars, which makes their putative moons interesting for studies of habitability. Technological advances could soon make an exomoon discovery with Kepler or the upcoming CHEOPS and PLATO space missions possible. Exomoon climates might be substantially different from exoplanet climates because the day-night cycles on moons are determined by the moon's synchronous rotation with its host planet. Moreover, planetary illumination at the top of the moon's atmosphere and tidal heating at the moon's surface can be substantial, which can affect the redistribution of energy on exomoons. Using an idealized general circulation model with simplified hydrologic, radiative, and convective processes, we calculate surface temperature, wind speed, mean meridional circulation, and energy transport on a 2.5 Mars-mass moon orbiting a 10-Jupiter-mass at 1 AU from a Sun-like star. The strong thermal irradiation from a young giant planet causes the satellite's polar regions to warm, which remains consistent with the dynamically-driven polar amplification seen in Earth models that lack ice-albedo feedback. Thermal irradiation from young, luminous giant planets onto water-rich exomoons can be strong enough to induce water loss on a planet, which could lead to a runaway greenhouse. Moons that are in synchronous rotation with their host planet and do not experience a runaway greenhouse could experience substantial polar melting induced by the polar amplification of planetary illumination and geothermal heating from tidal effects.

Ionospheric Outflow in the Magnetosphere: Circulation and Consequences

NASA Astrophysics Data System (ADS)

Welling, D. T.; Liemohn, M. W.

2017-12-01

Including ionospheric outflow in global magnetohydrodynamic models of near-Earth outer space has become an important step towards understanding the role of this plasma source in the magnetosphere. Such simulations have revealed the importance of outflow in populating the plasma sheet and inner magnetosphere as a function of outflow source characteristics. More importantly, these experiments have shown how outflow can control global dynamics, including tail dynamics and dayside reconnection rate. The broad impact of light and heavy ion outflow can create non-linear feedback loops between outflow and the magnetosphere. This paper reviews some of the most important revelations from global magnetospheric modeling that includes ionospheric outflow of light and heavy ions. It also introduces new advances in outflow modeling and coupling outflow to the magnetosphere.

[Advances in Liquid Biopsy and its Clinical Application in the Diagnosis 
and Treatment of Non-small Cell Lung Cancer].

PubMed

Zheng, Difan; Chen, Haiquan

2016-06-20

With the advances of technology, great progresses have been made in liquid biopsy in recent years. Liquid biopsy is currently playing a more and more important role in early diagnosis and treatment of cancer. Compared with traditional tissue biopsy, liquid biopsy is more popular in clinical practice due to its non-invasiveness, convenience and high repeatability. It has huge potential in the future. This review introduces circulating tumor cells (CTCs) and circulating tumor DNA (ctDNA) as the most important objects in liquid biopsy, mainly focusing on their history, biological characteristics, detection technologies, limitations and applications in non-small cell lung cancer.

Epigenome-wide association studies for cancer biomarker discovery in circulating cell-free DNA: technical advances and challenges.

PubMed

Tanić, Miljana; Beck, Stephan

2017-02-01

Since introducing the concept of epigenome-wide association studies (EWAS) in 2011, there has been a vast increase in the number of published EWAS studies in common diseases, including in cancer. These studies have increased our understanding of epigenetic events underlying carcinogenesis and have enabled the discovery of cancer-specific methylation biomarkers. In this mini-review, we have focused on the state of the art in EWAS applied to cell-free circulating DNA for epigenetic biomarker discovery in cancer and discussed associated technical advances and challenges, and our expectations for the future of the field. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

The viscous lee wave problem and its implications for ocean modelling

NASA Astrophysics Data System (ADS)

Shakespeare, Callum J.; Hogg, Andrew McC.

2017-05-01

Ocean circulation models employ 'turbulent' viscosity and diffusivity to represent unresolved sub-gridscale processes such as breaking internal waves. Computational power has now advanced sufficiently to permit regional ocean circulation models to be run at sufficiently high (100 m-1 km) horizontal resolution to resolve a significant part of the internal wave spectrum. Here we develop theory for boundary generated internal waves in such models, and in particular, where the waves dissipate their energy. We focus specifically on the steady lee wave problem where stationary waves are generated by a large-scale flow acting across ocean bottom topography. We generalise the energy flux expressions of [Bell, T., 1975. Topographically generated internal waves in the open ocean. J. Geophys. Res. 80, 320-327] to include the effect of arbitrary viscosity and diffusivity. Applying these results for realistic parameter choices we show that in the present generation of models with O(1) m2s-1 horizontal viscosity/diffusivity boundary-generated waves will inevitably dissipate the majority of their energy within a few hundred metres of the boundary. This dissipation is a direct consequence of the artificially high viscosity/diffusivity, which is not always physically justified in numerical models. Hence, caution is necessary in comparing model results to ocean observations. Our theory further predicts that O(10-2) m2s-1 horizontal and O(10-4) m2s-1 vertical viscosity/diffusivity is required to achieve a qualitatively inviscid representation of internal wave dynamics in ocean models.

Lower serum endogenous secretory receptor for advanced glycation end product level as a risk factor of metabolic syndrome among Japanese adult men: a 2-year longitudinal study.

PubMed

Momma, Haruki; Niu, Kaijun; Kobayashi, Yoritoshi; Huang, Cong; Chujo, Masahiko; Otomo, Atsushi; Tadaura, Hiroko; Miyata, Toshio; Nagatomi, Ryoichi

2014-02-01

Receptor for advanced glycation end products (RAGE) activation by its ligands is implicated in obesity-related metabolic disease and accelerated atherothrombosis. Circulating soluble (sRAGE) and/or endogenous secretory RAGE (esRAGE) may counteract the detrimental effects of RAGE. This study aimed at determining the relationship between circulating RAGE and metabolic syndrome (MetS) incidence among Japanese adult men. This 2-year longitudinal study included 426 Japanese men aged 30-83 years who had no MetS at baseline. Serum esRAGE and sRAGE were assayed by ELISA at baseline. Incident metabolic syndrome, defined according to the Asian cutoff based on the 2009 criteria of the American Heart Association Scientific Statements, was evaluated after the 2-year follow-up. During the follow-up period, 55 participants (12.9%) had newly diagnosed MetS. In the multiple logistic models comparing MetS risk in the lowest with that in the highest tertile of baseline esRAGE, a high serum esRAGE level was found to be significantly associated with a low risk of MetS [odds ratios (95% confidence interval), 0.37 (0.14-0.95); P for trend = 0.038] after adjusting for lifestyle and sociodemographic factors, serum high-sensitivity C-reactive protein level, estimated glomerular filtration rate, and MetS components at baseline. Although sRAGE and esRAGE were strongly correlated (r(s) = 0.88), the sRAGE level was not associated with MetS incidence. A high circulating esRAGE level, but not sRAGE level, was associated with a low MetS incidence among Japanese adult men.

Coupled Land-Atmosphere Dynamics Govern Long Duration Floods: A Pilot Study in Missouri River Basin Using a Bayesian Hierarchical Model

NASA Astrophysics Data System (ADS)

Najibi, N.; Lu, M.; Devineni, N.

2017-12-01

Long duration floods cause substantial damages and prolonged interruptions to water resource facilities and critical infrastructure. We present a novel generalized statistical and physical based model for flood duration with a deeper understanding of dynamically coupled nexus of the land surface wetness, effective atmospheric circulation and moisture transport/release. We applied the model on large reservoirs in the Missouri River Basin. The results indicate that the flood duration is not only a function of available moisture in the air, but also the antecedent condition of the blocking system of atmospheric pressure, resulting in enhanced moisture convergence, as well as the effectiveness of moisture condensation process leading to release. Quantifying these dynamics with a two-layer climate informed Bayesian multilevel model, we explain more than 80% variations in flood duration. The model considers the complex interaction between moisture transport, synoptic-to-large-scale atmospheric circulation pattern, and the antecedent wetness condition in the basin. Our findings suggest that synergy between a large low-pressure blocking system and a higher rate of divergent wind often triggers a long duration flood, and the prerequisite for moisture supply to trigger such event is moderate, which is more associated with magnitude than duration. In turn, this condition causes an extremely long duration flood if the surface wetness rate advancing to the flood event was already increased.

Regional climates in the GISS global circulation model - Synoptic-scale circulation

NASA Technical Reports Server (NTRS)

Hewitson, B.; Crane, R. G.

1992-01-01

A major weakness of current general circulation models (GCMs) is their perceived inability to predict reliably the regional consequences of a global-scale change, and it is these regional-scale predictions that are necessary for studies of human-environmental response. For large areas of the extratropics, the local climate is controlled by the synoptic-scale atmospheric circulation, and it is the purpose of this paper to evaluate the synoptic-scale circulation of the Goddard Institute for Space Studies (GISS) GCM. A methodology for validating the daily synoptic circulation using Principal Component Analysis is described, and the methodology is then applied to the GCM simulation of sea level pressure over the continental United States (excluding Alaska). The analysis demonstrates that the GISS 4 x 5 deg GCM Model II effectively simulates the synoptic-scale atmospheric circulation over the United States. The modes of variance describing the atmospheric circulation of the model are comparable to those found in the observed data, and these modes explain similar amounts of variance in their respective datasets. The temporal behavior of these circulation modes in the synoptic time frame are also comparable.

Computational Evaluation of the Steady and Pulsed Jet Effects on the Performance of a Circulation Control Wing Section

NASA Technical Reports Server (NTRS)

Liu, Yi; Sankar, Lakshmi N.; Englar, Robert; Ahuja, K.; Gaeta, R.

2003-01-01

Circulation Control Wing (CCW) technology is a very effective way of achieving very high lift coefficients needed by aircraft during take-off and landing. This technology can also be used to directly control the flow field over the wing. Compared to a conventional high-lift system, a Circulation Control Wing (CCW) can generate the required values of lift coefficient C(sub L,max) during take-off/landing with fewer or no moving parts and much less complexity. Earlier designs of CCW configurations used airfoils with a large radius rounded trailing edge to maximize the lift benefit. However, these designs also produced very high drag. These high drag levels associated with the blunt, large radius trailing edge can be prohibitive under cruise conditions when Circulation Control is no longer necessary. To overcome this difficulty, an advanced CCW section, i.e., a circulation hinged flap was developed to replace the original rounded trailing edge CC airfoil. This concept developed by Englar is shown. The upper surface of the CCW flap is a large-radius arc surface, but the lower surface of the flap is flat. The flap could be deflected from 0 degrees to 90 degrees. When an aircraft takes-off or lands, the flap is deflected as in a conventional high lift system. Then this large radius on the upper surface produces a large jet turning angle, leading to high lift. When the aircraft is in cruise, the flap is retracted and a conventional sharp trailing edge shape results, greatly reducing the drag. This kind of flap does have some moving elements that increase the weight and complexity over an earlier CCW design. But overall, the hinged flap design still maintains most of the Circulation Control high lift advantages, while greatly reducing the drag in cruising condition associated with the rounded trailing edge CCW design. In the present work, an unsteady three-dimensional Navier-Stokes analysis procedure has been developed and applied to this advanced CCW configuration. The solver can be used in both a 2-D and a 3-D mode, and can thus model airfoils as well as finite wings. The jet slot location, slot height, and the flap angle can all be varied easily and individually in the grid generator and the flow solver. Steady jets, pulsed jets, the leading edge and trailing edge blowing can all be studied with this solver.

Vistas in applied mathematics: Numerical analysis, atmospheric sciences, immunology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balakrishnan, A.V.; Dorodnitsyn, A.A.; Lions, J.L.

1986-01-01

Advances in the theory and application of numerical modeling techniques are discussed in papers contributed, primarily by Soviet scientists, on the occasion of the 60th birthday of Gurii I. Marchuk. Topics examined include splitting techniques for computations of industrial flows, the mathematical foundations of the k-epsilon turbulence model, splitting methods for the solution of the incompressible Navier-Stokes equations, the approximation of inhomogeneous hyperbolic boundary-value problems, multigrid methods, and the finite-element approximation of minimal surfaces. Consideration is given to dynamic modeling of moist atmospheres, satellite observations of the earth radiation budget and the problem of energy-active ocean regions, a numerical modelmore » of the biosphere for use with GCMs, and large-scale modeling of ocean circulation. Also included are several papers on modeling problems in immunology.« less

Diversity in the representation of large-scale circulation associated with ENSO-Indian summer monsoon teleconnections in CMIP5 models

NASA Astrophysics Data System (ADS)

Ramu, Dandi A.; Chowdary, Jasti S.; Ramakrishna, S. S. V. S.; Kumar, O. S. R. U. B.

2018-04-01

Realistic simulation of large-scale circulation patterns associated with El Niño-Southern Oscillation (ENSO) is vital in coupled models in order to represent teleconnections to different regions of globe. The diversity in representing large-scale circulation patterns associated with ENSO-Indian summer monsoon (ISM) teleconnections in 23 Coupled Model Intercomparison Project Phase 5 (CMIP5) models is examined. CMIP5 models have been classified into three groups based on the correlation between Niño3.4 sea surface temperature (SST) index and ISM rainfall anomalies, models in group 1 (G1) overestimated El Niño-ISM teleconections and group 3 (G3) models underestimated it, whereas these teleconnections are better represented in group 2 (G2) models. Results show that in G1 models, El Niño-induced Tropical Indian Ocean (TIO) SST anomalies are not well represented. Anomalous low-level anticyclonic circulation anomalies over the southeastern TIO and western subtropical northwest Pacific (WSNP) cyclonic circulation are shifted too far west to 60° E and 120° E, respectively. This bias in circulation patterns implies dry wind advection from extratropics/midlatitudes to Indian subcontinent. In addition to this, large-scale upper level convergence together with lower level divergence over ISM region corresponding to El Niño are stronger in G1 models than in observations. Thus, unrealistic shift in low-level circulation centers corroborated by upper level circulation changes are responsible for overestimation of ENSO-ISM teleconnections in G1 models. Warm Pacific SST anomalies associated with El Niño are shifted too far west in many G3 models unlike in the observations. Further large-scale circulation anomalies over the Pacific and ISM region are misrepresented during El Niño years in G3 models. Too strong upper-level convergence away from Indian subcontinent and too weak WSNP cyclonic circulation are prominent in most of G3 models in which ENSO-ISM teleconnections are underestimated. On the other hand, many G2 models are able to represent most of large-scale circulation over Indo-Pacific region associated with El Niño and hence provide more realistic ENSO-ISM teleconnections. Therefore, this study advocates the importance of representation/simulation of large-scale circulation patterns during El Niño years in coupled models in order to capture El Niño-monsoon teleconnections well.

Atmospheric Gravitational Torque Variations Based on Various Gravity Fields

NASA Technical Reports Server (NTRS)

Sanchez, Braulio V.; Rowlands, David; Smith, David E. (Technical Monitor)

2001-01-01

Advancements in the study of the Earth's variable rate of rotation and the motion of its rotation axis have given impetus to the analysis of the torques between the atmosphere, oceans and solid Earth. The output from global general circulation models of the atmosphere (pressure, surface stress) is being used as input to the torque computations. Gravitational torque between the atmosphere, oceans and solid Earth is an important component of the torque budget. Computation of the gravitational torque involves the adoption of a gravitational model from a wide variety available. The purpose of this investigation is to ascertain to what extent this choice might influence the results of gravitational torque computations.

Circulating CD147 predicts mortality in advanced hepatocellular carcinoma.

PubMed

Lee, Aimei; Rode, Anthony; Nicoll, Amanda; Maczurek, Annette E; Lim, Lucy; Lim, Seok; Angus, Peter; Kronborg, Ian; Arachchi, Niranjan; Gorelik, Alexandra; Liew, Danny; Warner, Fiona J; McCaughan, Geoffrey W; McLennan, Susan V; Shackel, Nicholas A

2016-02-01

The glycoprotein CD147 has a role in tumor progression, is readily detectable in the circulation, and is abundantly expressed in hepatocellular carcinoma (HCC). Advanced HCC patients are a heterogeneous group with some individuals having dismal survival. The aim of this study was to examine circulating soluble CD147 levels as a prognostic marker in HCC patients. CD147 was measured in 277 patients (110 HCC, 115 chronic liver disease, and 52 non-liver disease). Clinical data included etiology, tumor progression, Barcelona Clinic Liver Cancer (BCLC) stage, and treatment response. Patients with HCC were stratified into two groups based upon the 75th percentile of CD147 levels (24 ng/mL). CD147 in HCC correlated inversely with poor survival (P = 0.031). Increased CD147 predicted poor survival in BCLC stages C and D (P = 0.045), and CD147 levels >24 ng/mL predicted a significantly diminished 90-day and 180-day survival time (hazard ratio [HR] = 6.1; 95% confidence interval [CI]: 2.1-63.2; P = 0.0045 and HR = 2.8; 95% CI: 1.2-12.6; P = 0.028, respectively). In BCLC stage C, CD147 predicted prognosis; levels >24 ng/mL were associated with a median survival of 1.5 months compared with 6.5 months with CD147 levels ≤24 ng/mL (P = 0.03). CD147 also identified patients with a poor prognosis independent from treatment frequency, modality, and tumor size. Circulating CD147 is an independent marker of survival in advanced HCC. CD147 requires further evaluation as a potential new prognostic measure in HCC to identify patients with advanced disease who have a poor prognosis. © 2015 Journal of Gastroenterology and Hepatology Foundation and John Wiley & Sons Australia, Ltd.

Reproducibility of Digital PCR Assays for Circulating Tumor DNA Analysis in Advanced Breast Cancer

PubMed Central

Hrebien, Sarah; O’Leary, Ben; Beaney, Matthew; Schiavon, Gaia; Fribbens, Charlotte; Bhambra, Amarjit; Johnson, Richard; Turner, Nicholas

2016-01-01

Circulating tumor DNA (ctDNA) analysis has the potential to allow non-invasive analysis of tumor mutations in advanced cancer. In this study we assessed the reproducibility of digital PCR (dPCR) assays of circulating tumor DNA in a cohort of patients with advanced breast cancer and assessed delayed plasma processing using cell free DNA preservative tubes. We recruited a cohort of 96 paired samples from 71 women with advanced breast cancer who had paired blood samples processed either immediately or delayed in preservative tubes with processing 48–72 hours after collection. Plasma DNA was analysed with multiplex digital PCR (mdPCR) assays for hotspot mutations in PIK3CA, ESR1 and ERBB2, and for AKT1 E17K. There was 94.8% (91/96) agreement in mutation calling between immediate and delayed processed tubes, kappa 0.88 95% CI 0.77–0.98). Discordance in mutation calling resulted from low allele frequency and likely stochastic effects. In concordant samples there was high correlation in mutant copies per ml plasma (r2 = 0.98; p<0.0001). There was elevation of total cell free plasma DNA concentrations in 10.3% of delayed processed tubes, although overall quantification of total cell free plasma DNA had similar prognostic effects in immediate (HR 3.6) and delayed (HR 3.0) tubes. There was moderate agreement in changes in allele fraction between sequential samples in quantitative mutation tracking (r = 0.84, p = 0.0002). Delayed processing of samples using preservative tubes allows for centralized ctDNA digital PCR mutation screening in advanced breast cancer. The potential of preservative tubes in quantitative mutation tracking requires further research. PMID:27760227

Reproducibility of Digital PCR Assays for Circulating Tumor DNA Analysis in Advanced Breast Cancer.

PubMed

Hrebien, Sarah; O'Leary, Ben; Beaney, Matthew; Schiavon, Gaia; Fribbens, Charlotte; Bhambra, Amarjit; Johnson, Richard; Garcia-Murillas, Isaac; Turner, Nicholas

2016-01-01

Circulating tumor DNA (ctDNA) analysis has the potential to allow non-invasive analysis of tumor mutations in advanced cancer. In this study we assessed the reproducibility of digital PCR (dPCR) assays of circulating tumor DNA in a cohort of patients with advanced breast cancer and assessed delayed plasma processing using cell free DNA preservative tubes. We recruited a cohort of 96 paired samples from 71 women with advanced breast cancer who had paired blood samples processed either immediately or delayed in preservative tubes with processing 48-72 hours after collection. Plasma DNA was analysed with multiplex digital PCR (mdPCR) assays for hotspot mutations in PIK3CA, ESR1 and ERBB2, and for AKT1 E17K. There was 94.8% (91/96) agreement in mutation calling between immediate and delayed processed tubes, kappa 0.88 95% CI 0.77-0.98). Discordance in mutation calling resulted from low allele frequency and likely stochastic effects. In concordant samples there was high correlation in mutant copies per ml plasma (r2 = 0.98; p<0.0001). There was elevation of total cell free plasma DNA concentrations in 10.3% of delayed processed tubes, although overall quantification of total cell free plasma DNA had similar prognostic effects in immediate (HR 3.6) and delayed (HR 3.0) tubes. There was moderate agreement in changes in allele fraction between sequential samples in quantitative mutation tracking (r = 0.84, p = 0.0002). Delayed processing of samples using preservative tubes allows for centralized ctDNA digital PCR mutation screening in advanced breast cancer. The potential of preservative tubes in quantitative mutation tracking requires further research.

Timing of glacier advances and climate in the High Tatra Mountains (Western Carpathians) during the Last Glacial Maximum

NASA Astrophysics Data System (ADS)

Makos, Michał; Dzierżek, Jan; Nitychoruk, Jerzy; Zreda, Marek

2014-07-01

During the Last Glacial Maximum (LGM), long valley glaciers developed on the northern and southern sides of the High Tatra Mountains, Poland and Slovakia. Chlorine-36 exposure dating of moraine boulders suggests two major phases of moraine stabilization, at 26-21 ka (LGM I - maximum) and at 18 ka (LGM II). The dates suggest a significantly earlier maximum advance on the southern side of the range. Reconstructing the geometry of four glaciers in the Sucha Woda, Pańszczyca, Mlynicka and Velicka valleys allowed determining their equilibrium-line altitudes (ELAs) at 1460, 1460, 1650 and 1700 m asl, respectively. Based on a positive degree-day model, the mass balance and climatic parameter anomaly (temperature and precipitation) has been constrained for LGM I advance. Modeling results indicate slightly different conditions between northern and southern slopes. The N-S ELA gradient finds confirmation in slightly higher temperature (at least 1 °C) or lower precipitation (15%) on the south-facing glaciers during LGM I. The precipitation distribution over the High Tatra Mountains indicates potentially different LGM atmospheric circulation than at the present day, with reduced northwesterly inflow and increased southerly and westerly inflows of moist air masses.

Extracellular vesicles for personalized therapy decision support in advanced metastatic cancers and its potential impact for prostate cancer.

PubMed

Soekmadji, Carolina; Corcoran, Niall M; Oleinikova, Irina; Jovanovic, Lidija; Ramm, Grant A; Nelson, Colleen C; Jenster, Guido; Russell, Pamela J

2017-10-01

The use of circulating tumor cells (CTCs) and circulating extracellular vesicles (EVs), such as exosomes, as liquid biopsy-derived biomarkers for cancers have been investigated. CTC enumeration using the CellSearch based platform provides an accurate insight on overall survival where higher CTC counts indicate poor prognosis for patients with advanced metastatic cancer. EVs provide information based on their lipid, protein, and nucleic acid content and can be isolated from biofluids and analyzed from a relatively small volume, providing a routine and non-invasive modality to monitor disease progression. Our pilot experiment by assessing the level of two subpopulations of small EVs, the CD9 positive and CD63 positive EVs, showed that the CD9 positive EV level is higher in plasma from patients with advanced metastatic prostate cancer with detectable CTCs. These data show the potential utility of a particular EV subpopulation to serve as biomarkers for advanced metastatic prostate cancer. EVs can potentially be utilized as biomarkers to provide accurate genotypic and phenotypic information for advanced prostate cancer, where new strategies to design a more personalized therapy is currently the focus of considerable investigation. © 2017 Wiley Periodicals, Inc.

Next Generation Climate Change Experiments Needed to Advance Knowledge and for Assessment of CMIP6

DOE Office of Scientific and Technical Information (OSTI.GOV)

Katzenberger, John; Arnott, James; Wright, Alyson

2014-10-30

The Aspen Global Change Institute hosted a technical science workshop entitled, “Next generation climate change experiments needed to advance knowledge and for assessment of CMIP6,” on August 4-9, 2013 in Aspen, CO. Jerry Meehl (NCAR), Richard Moss (PNNL), and Karl Taylor (LLNL) served as co-chairs for the workshop which included the participation of 32 scientists representing most of the major climate modeling centers for a total of 160 participant days. In August 2013, AGCI gathered a high level meeting of representatives from major climate modeling centers around the world to assess achievements and lessons learned from the most recent generationmore » of coordinated modeling experiments known as the Coupled Model Intercomparison Project – 5 (CMIP5) as well as to scope out the science questions and coordination structure desired for the next anticipated phase of modeling experiments called CMIP6. The workshop allowed for reflection on the coordination of the CMIP5 process as well as intercomparison of model results, such as were assessed in the most recent IPCC 5th Assessment Report, Working Group 1. For example, this slide from Masahiro Watanabe examines performance on a range of models capturing Atlantic Meridional Overturning Circulation (AMOC).« less

Simulation of seasonal anomalies of atmospheric circulation using coupled atmosphere-ocean model

NASA Astrophysics Data System (ADS)

Tolstykh, M. A.; Diansky, N. A.; Gusev, A. V.; Kiktev, D. B.

2014-03-01

A coupled atmosphere-ocean model intended for the simulation of coupled circulation at time scales up to a season is developed. The semi-Lagrangian atmospheric general circulation model of the Hydrometeorological Centre of Russia, SLAV, is coupled with the sigma model of ocean general circulation developed at the Institute of Numerical Mathematics, Russian Academy of Sciences (INM RAS), INMOM. Using this coupled model, numerical experiments on ensemble modeling of the atmosphere and ocean circulation for up to 4 months are carried out using real initial data for all seasons of an annual cycle in 1989-2010. Results of these experiments are compared to the results of the SLAV model with the simple evolution of the sea surface temperature. A comparative analysis of seasonally averaged anomalies of atmospheric circulation shows prospects in applying the coupled model for forecasts. It is shown with the example of the El Niño phenomenon of 1997-1998 that the coupled model forecasts the seasonally averaged anomalies for the period of the nonstationary El Niño phase significantly better.

Library Circulation Systems: An Overview

ERIC Educational Resources Information Center

Surace, Cecily J.

1972-01-01

The model circulation system outlined is an on-line real time system in which the circulation file is created from the shelf list. The model extends beyond the operational limits of most existing circulation systems and can be considered a reflection of the current state of the art. (36 references) (Author/NH)

Estimation of the Ocean Skin Temperature using the NASA GEOS Atmospheric Data Assimilation System

NASA Technical Reports Server (NTRS)

Koster, Randal D.; Akella, Santha; Todling, Ricardo; Suarez, Max

2016-01-01

This report documents the status of the development of a sea surface temperature (SST) analysis for the Goddard Earth Observing System (GEOS) Version-5 atmospheric data assimilation system (ADAS). Its implementation is part of the steps being taken toward the development of an integrated earth system analysis. Currently, GEOS-ADAS SST is a bulk ocean temperature (from ocean boundary conditions), and is almost identical to the skin sea surface temperature. Here we describe changes to the atmosphere-ocean interface layer of the GEOS-atmospheric general circulation model (AGCM) to include near surface diurnal warming and cool-skin effects. We also added SST relevant Advanced Very High Resolution Radiometer (AVHRR) observations to the GEOS-ADAS observing system. We provide a detailed description of our analysis of these observations, along with the modifications to the interface between the GEOS atmospheric general circulation model, gridpoint statistical interpolation-based atmospheric analysis and the community radiative transfer model. Our experiments (with and without these changes) show improved assimilation of satellite radiance observations. We obtained a closer fit to withheld, in-situ buoys measuring near-surface SST. Evaluation of forecast skill scores corroborate improvements seen in the observation fits. Along with a discussion of our results, we also include directions for future work.

Review of the clinical applications and technological advances of circulating tumor DNA in cancer monitoring.

PubMed

Chang, Yi; Tolani, Bhairavi; Nie, Xiuhong; Zhi, Xiuyi; Hu, Mu; He, Biao

2017-01-01

Circulating cell-free DNA (cfDNA) released by tumor cells, termed ctDNA, closely reflects the heterogeneity of primary cancers and their metastases. As a noninvasive, real-time monitoring biomarker, ctDNA is a promising tool for detecting driver gene mutations, assessing tumor burden and acquired resistance, and early diagnosis. However, isolation and enrichment of cfDNA is a big challenge due to the high degree of DNA fragmentation and its relatively low abundance in the bloodstream. This review aims to provide insights into the recent technological advances in acquisition of optimal quality cfDNA, the use of preservatives, isolation methods, processing timelines, and detection techniques. It also describes clinical applications of ctDNA in cancer patient management.

Transport mechanisms at the pulmonary mucosa: implications for drug delivery.

PubMed

Nickel, Sabrina; Clerkin, Caoimhe G; Selo, Mohammed Ali; Ehrhardt, Carsten

2016-01-01

Over the past years, a significant number of papers have substantiated earlier findings proposing a role for drug transporter proteins in pulmonary drug disposition. Whilst the majority of reports present data from in vitro models, a growing number of publications advance the field by introducing sophisticated ex vivo and in vivo techniques. In a few cases, evidence from clinical studies in human volunteers is complementing the picture. In this review, recent advances in pulmonary drug transporter research are critically evaluated. Transporter expression data in tissues and cell-based in vitro models is summarized and information on transport activity assessed. Novel techniques allowing for better quantification of transporter-related effects following pulmonary delivery are also described. Different tissue and cell populations of the lung have distinct transporter expression patterns. Whether these patterns are affected by disease, gender and smoking habits requires further clarification. Transporters have been found to have an impact on drug absorption processes, at least in vitro. Recent ex vivo experiments using isolated, perfused lung models, however, suggest that mainly efflux pumps have significant effects on absorption into the pulmonary circulation. Whether these rodent-based ex vivo models predict the human situation is basis for further research.

Technical advance: liposomal alendronate depletes monocytes and macrophages in the nonhuman primate model of human disease.

PubMed

Burwitz, Benjamin J; Reed, Jason S; Hammond, Katherine B; Ohme, Merete A; Planer, Shannon L; Legasse, Alfred W; Ericsen, Adam J; Richter, Yoram; Golomb, Gershon; Sacha, Jonah B

2014-09-01

Nonhuman primates are critical animal models for the study of human disorders and disease and offer a platform to assess the role of immune cells in pathogenesis via depletion of specific cellular subsets. However, this model is currently hindered by the lack of reagents that safely and specifically ablate myeloid cells of the monocyte/macrophage Lin. Given the central importance of macrophages in homeostasis and host immunity, development of a macrophage-depletion technique in nonhuman primates would open new avenues of research. Here, using LA at i.v. doses as low as 0.1 mg/kg, we show a >50% transient depletion of circulating monocytes and tissue-resident macrophages in RMs by an 11-color flow cytometric analysis. Diminution of monocytes was followed rapidly by emigration of monocytes from the bone marrow, leading to a rebound of monocytes to baseline levels. Importantly, LA was well-tolerated, as no adverse effects or changes in gross organ function were observed during depletion. These results advance the ex vivo study of myeloid cells by flow cytometry and pave the way for in vivo studies of monocyte/macrophage biology in nonhuman primate models of human disease. © 2014 Society for Leukocyte Biology.

Technical Advance: Liposomal alendronate depletes monocytes and macrophages in the nonhuman primate model of human disease

PubMed Central

Burwitz, Benjamin J.; Reed, Jason S.; Hammond, Katherine B.; Ohme, Merete A.; Planer, Shannon L.; Legasse, Alfred W.; Ericsen, Adam J.; Richter, Yoram; Golomb, Gershon; Sacha, Jonah B.

2014-01-01

Nonhuman primates are critical animal models for the study of human disorders and disease and offer a platform to assess the role of immune cells in pathogenesis via depletion of specific cellular subsets. However, this model is currently hindered by the lack of reagents that safely and specifically ablate myeloid cells of the monocyte/macrophage Lin. Given the central importance of macrophages in homeostasis and host immunity, development of a macrophage-depletion technique in nonhuman primates would open new avenues of research. Here, using LA at i.v. doses as low as 0.1 mg/kg, we show a >50% transient depletion of circulating monocytes and tissue-resident macrophages in RMs by an 11-color flow cytometric analysis. Diminution of monocytes was followed rapidly by emigration of monocytes from the bone marrow, leading to a rebound of monocytes to baseline levels. Importantly, LA was well-tolerated, as no adverse effects or changes in gross organ function were observed during depletion. These results advance the ex vivo study of myeloid cells by flow cytometry and pave the way for in vivo studies of monocyte/macrophage biology in nonhuman primate models of human disease. PMID:24823811

Paleoceanography. Onset of Mediterranean outflow into the North Atlantic.

PubMed

Hernández-Molina, F Javier; Stow, Dorrik A V; Alvarez-Zarikian, Carlos A; Acton, Gary; Bahr, André; Balestra, Barbara; Ducassou, Emmanuelle; Flood, Roger; Flores, José-Abel; Furota, Satoshi; Grunert, Patrick; Hodell, David; Jimenez-Espejo, Francisco; Kim, Jin Kyoung; Krissek, Lawrence; Kuroda, Junichiro; Li, Baohua; Llave, Estefania; Lofi, Johanna; Lourens, Lucas; Miller, Madeline; Nanayama, Futoshi; Nishida, Naohisa; Richter, Carl; Roque, Cristina; Pereira, Hélder; Sanchez Goñi, Maria Fernanda; Sierro, Francisco J; Singh, Arun Deo; Sloss, Craig; Takashimizu, Yasuhiro; Tzanova, Alexandrina; Voelker, Antje; Williams, Trevor; Xuan, Chuang

2014-06-13

Sediments cored along the southwestern Iberian margin during Integrated Ocean Drilling Program Expedition 339 provide constraints on Mediterranean Outflow Water (MOW) circulation patterns from the Pliocene epoch to the present day. After the Strait of Gibraltar opened (5.33 million years ago), a limited volume of MOW entered the Atlantic. Depositional hiatuses indicate erosion by bottom currents related to higher volumes of MOW circulating into the North Atlantic, beginning in the late Pliocene. The hiatuses coincide with regional tectonic events and changes in global thermohaline circulation (THC). This suggests that MOW influenced Atlantic Meridional Overturning Circulation (AMOC), THC, and climatic shifts by contributing a component of warm, saline water to northern latitudes while in turn being influenced by plate tectonics. Copyright © 2014, American Association for the Advancement of Science.

Workshop on Atmospheric Transport on Mars

NASA Technical Reports Server (NTRS)

Barnes, J. R. (Editor); Haberle, R. M. (Editor)

1993-01-01

On June 28-30, 1993, the Workshop on Atmospheric Transport on Mars was held in Corvallis, Oregon. The workshop was organized under the auspices of the MSATT (Mars Surface and Atmosphere Through Time) Program of NASA, and was jointly sponsored by the Lunar and Planetary Institute, Oregon State University, and the Oregon Space Grant Consortium. More than 50 scientists attended the workshop, which was the first such meeting to focus upon circulation processes in the Mars atmosphere. The timing of the workshop placed it almost on the eve of the arrival of Mars Observer at Mars, so that the presented papers gave a picture of the 'state of the art' in Mars atmospheric science just prior to the expected arrival of new data. The workshop highlighted a host of recent advances in atmospheric modeling and analysis - advances that will be relevant to any future observations.

Prognostic value of circulating VEGFR2+ bone marrow-derived progenitor cells in patients with advanced cancer.

PubMed

Massard, Christophe; Borget, Isabelle; Le Deley, Marie Cécile; Taylor, Melissa; Gomez-Roca, Carlos; Soria, Jean Charles; Farace, Françoise

2012-06-01

We hypothesised that host-related markers, possibly reflecting tumour aggressiveness, such as circulating endothelial cells (CEC) and circulating VEGFR2(+) bone marrow-derived (BMD) progenitor cells, could have prognostic value in patients with advanced cancer enrolled in early anticancer drug development trials. Baseline CECs (CD45(-)CD31(+)CD146(+)7AAD(-) cells) and circulating VEGFR2(+)-BMD progenitor cells (defined as CD45(dim)CD34(+)VEGFR2(+)7AAD(-) cells) were measured by flow-cytometry in 71 and 58 patients included in phase 1 trials testing novel anti-vascular or anti-angiogenic agents. Correlations between levels of CECs, circulating VEGFR2(+)-BMD progenitor cells, clinical and biological prognostic factors (i.e. the Royal Marsden Hospital (RMH) score), and overall survival (OS) were studied. The median value of CECs was 12 CEC/ml (range 0-154/ml). The median level of VEGFR2(+)-BMD progenitor cells was 1.3% (range 0-32.5%) of circulating BMD-CD34(+) progenitors. While OS was not correlated with CEC levels, it was significantly worse in patients with high VEGFR2(+)-BMD progenitor levels (>1%) (median OS 9.0 versus 17.0 months), and with a RMH prognostic score >0 (median OS 9.0 versus 24.2 months). The prognostic value of VEGFR2(+)-BMD progenitor levels remained significant (hazard ratio (HR) = 2.3, 95% confidence interval (CI), 1.1-4.6, p = 0.02) after multivariate analysis. A composite VEGFR2(+)-BMD progenitor level/RHM score ≥ 2 was significantly associated with an increased risk of death compared to scores of 0 or 1 (median OS 9.0 versus 18.4 months, HR = 2.6 (95%CI, 1.2-5.8, p = 0.02)). High circulating VEGFR2(+)-BMD progenitor levels are associated with poor prognostics and when combined to classical clinical and biological parameters could provide a new tool for patient selection in early anticancer drug trials. Copyright © 2012 Elsevier Ltd. All rights reserved.

In vivo multispectral photoacoustic and photothermal flow cytometry with multicolor dyes: a potential for real-time assessment of circulation, dye-cell interaction, and blood volume.

PubMed

Proskurnin, Mikhail A; Zhidkova, Tatyana V; Volkov, Dmitry S; Sarimollaoglu, Mustafa; Galanzha, Ekaterina I; Mock, Donald; Nedosekin, Dmitry A; Zharov, Vladimir P

2011-10-01

Recently, photoacoustic (PA) flow cytometry (PAFC) has been developed for in vivo detection of circulating tumor cells and bacteria targeted by nanoparticles. Here, we propose multispectral PAFC with multiple dyes having distinctive absorption spectra as multicolor PA contrast agents. As a first step of our proof-of-concept, we characterized high-speed PAFC capability to monitor the clearance of three dyes (Indocyanine Green [ICG], Methylene Blue [MB], and Trypan Blue [TB]) in an animal model in vivo and in real time. We observed strong dynamic PA signal fluctuations, which can be associated with interactions of dyes with circulating blood cells and plasma proteins. PAFC demonstrated enumeration of circulating red and white blood cells labeled with ICG and MB, respectively, and detection of rare dead cells uptaking TB directly in bloodstream. The possibility for accurate measurements of various dye concentrations including Crystal Violet and Brilliant Green were verified in vitro using complementary to PAFC photothermal (PT) technique and spectrophotometry under batch and flow conditions. We further analyze the potential of integrated PAFC/PT spectroscopy with multiple dyes for rapid and accurate measurements of circulating blood volume without a priori information on hemoglobin content, which is impossible with existing optical techniques. This is important in many medical conditions including surgery and trauma with extensive blood loss, rapid fluid administration, and transfusion of red blood cells. The potential for developing a robust clinical PAFC prototype that is safe for human, and its applications for studying the liver function are further highlighted. Copyright © 2011 International Society for Advancement of Cytometry.

Biodiversity and Climate Modeling Workshop Series: Identifying gaps and needs for improving large-scale biodiversity models

NASA Astrophysics Data System (ADS)

Weiskopf, S. R.; Myers, B.; Beard, T. D.; Jackson, S. T.; Tittensor, D.; Harfoot, M.; Senay, G. B.

2017-12-01

At the global scale, well-accepted global circulation models and agreed-upon scenarios for future climate from the Intergovernmental Panel on Climate Change (IPCC) are available. In contrast, biodiversity modeling at the global scale lacks analogous tools. While there is great interest in development of similar bodies and efforts for international monitoring and modelling of biodiversity at the global scale, equivalent modelling tools are in their infancy. This lack of global biodiversity models compared to the extensive array of general circulation models provides a unique opportunity to bring together climate, ecosystem, and biodiversity modeling experts to promote development of integrated approaches in modeling global biodiversity. Improved models are needed to understand how we are progressing towards the Aichi Biodiversity Targets, many of which are not on track to meet the 2020 goal, threatening global biodiversity conservation, monitoring, and sustainable use. We brought together biodiversity, climate, and remote sensing experts to try to 1) identify lessons learned from the climate community that can be used to improve global biodiversity models; 2) explore how NASA and other remote sensing products could be better integrated into global biodiversity models and 3) advance global biodiversity modeling, prediction, and forecasting to inform the Aichi Biodiversity Targets, the 2030 Sustainable Development Goals, and the Intergovernmental Platform on Biodiversity and Ecosystem Services Global Assessment of Biodiversity and Ecosystem Services. The 1st In-Person meeting focused on determining a roadmap for effective assessment of biodiversity model projections and forecasts by 2030 while integrating and assimilating remote sensing data and applying lessons learned, when appropriate, from climate modeling. Here, we present the outcomes and lessons learned from our first E-discussion and in-person meeting and discuss the next steps for future meetings.

Atmospheric circulation classification comparison based on wildfires in Portugal

NASA Astrophysics Data System (ADS)

Pereira, M. G.; Trigo, R. M.

2009-04-01

Atmospheric circulation classifications are not a simple description of atmospheric states but a tool to understand and interpret the atmospheric processes and to model the relation between atmospheric circulation and surface climate and other related variables (Radan Huth et al., 2008). Classifications were initially developed with weather forecasting purposes, however with the progress in computer processing capability, new and more robust objective methods were developed and applied to large datasets prompting atmospheric circulation classification methods to one of the most important fields in synoptic and statistical climatology. Classification studies have been extensively used in climate change studies (e.g. reconstructed past climates, recent observed changes and future climates), in bioclimatological research (e.g. relating human mortality to climatic factors) and in a wide variety of synoptic climatological applications (e.g. comparison between datasets, air pollution, snow avalanches, wine quality, fish captures and forest fires). Likewise, atmospheric circulation classifications are important for the study of the role of weather in wildfire occurrence in Portugal because the daily synoptic variability is the most important driver of local weather conditions (Pereira et al., 2005). In particular, the objective classification scheme developed by Trigo and DaCamara (2000) to classify the atmospheric circulation affecting Portugal have proved to be quite useful in discriminating the occurrence and development of wildfires as well as the distribution over Portugal of surface climatic variables with impact in wildfire activity such as maximum and minimum temperature and precipitation. This work aims to present: (i) an overview the existing circulation classification for the Iberian Peninsula, and (ii) the results of a comparison study between these atmospheric circulation classifications based on its relation with wildfires and relevant meteorological variables. To achieve these objectives we consider the main classifications for Iberia developed within the framework of COST action 733 (Radan Huth et al., 2008). This European project aims to provide a wide range of atmospheric circulation classifications for Europe and sub-regions (http://www.cost733.org/) with an ambitious objective of assessing, comparing and classifying all relevant weather situations in Europe. Pereira et al. (2005) "Synoptic patterns associated with large summer forest fires in Portugal". Agricultural and Forest Meteorology,129, 11-25. Radan Huth et al. (2008) "Classifications of Atmospheric circulation patterns. Recent advances and applications". Trends and Directions in Climate Research: Ann. N.Y. Acad. Sci. 1146: 105-152. doi: 10.1196/annals.1446.019. Trigo R.M., DaCamara C. (2000) "Circulation Weather Types and their impact on the precipitation regime in Portugal". Int J of Climatology, 20, 1559-1581.

A gravity model for crustal dynamics (GEM-L2)

NASA Technical Reports Server (NTRS)

Lerch, F. J.; Klosko, S. M.; Patel, G. B.; Wagner, C. A.

1985-01-01

The Laser Geodynamics Satellite (Lageos) was the first NASA satellite which was placed into orbit exclusively for laser ranging applications. Lageos was designed to permit extremely accurate measurements of the earth's rotation and the movement of the tectonic plates. The Goddard earth model, GEM-L2, was derived mainly on the basis of the precise laser ranging data taken on many satellites. Douglas et al. (1984) have demonstrated the utility of GEM-L2 in detecting the broadest ocean circulations. As Lageos data constitute the most extensive set of satellite laser observations ever collected, the incorporation of 2-1/2 years of these data into the Goddard earth models (GEM) has substantially advanced the geodynamical objectives. The present paper discusses the products of the GEM-L2 solution.

Clinical application of three-dimensional printing to the management of complex univentricular hearts with abnormal systemic or pulmonary venous drainage.

PubMed

McGovern, Eimear; Kelleher, Eoin; Snow, Aisling; Walsh, Kevin; Gadallah, Bassem; Kutty, Shelby; Redmond, John M; McMahon, Colin J

2017-09-01

In recent years, three-dimensional printing has demonstrated reliable reproducibility of several organs including hearts with complex congenital cardiac anomalies. This represents the next step in advanced image processing and can be used to plan surgical repair. In this study, we describe three children with complex univentricular hearts and abnormal systemic or pulmonary venous drainage, in whom three-dimensional printed models based on CT data assisted with preoperative planning. For two children, after group discussion and examination of the models, a decision was made not to proceed with surgery. We extend the current clinical experience with three-dimensional printed modelling and discuss the benefits of such models in the setting of managing complex surgical problems in children with univentricular circulation and abnormal systemic or pulmonary venous drainage.

Advanced Microwave Ferrite Research (AMFeR): Phase Three

DTIC Science & Technology

2008-07-31

lApril 1, 2006 thru June 30, 2008 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER Advanced Microwave Ferrite Research (AMFeR): Phase Three 5b. GRANT NUMBER...Advance Microwave Ferrite Research (AMFeR), Phase III project. The purpose of this research endeavor is to devise ferrite materials for microwave, self...biased circulator applications. The central task of the project is to fabricate ferrites that have a high magnetic saturation, high coercivity and low

Development of a New Arterial-Line Filter Design Using Computational Fluid Dynamics Analysis

PubMed Central

Herbst, Daniel P.; Najm, Hani K.

2012-01-01

Abstract: Arterial-line filters used during extracorporeal circulation continue to rely on the physical properties of a wetted micropore and reductions in blood flow velocity to affect air separation from the circulating blood volume. Although problems associated with air embolism during cardiac surgery persist, a number of investigators have concluded that further improvements in filtration are needed to enhance air removal during cardiopulmonary bypass procedures. This article reviews theoretical principles of micropore filter technology and outlines the development of a new arterial-line filter concept using computational fluid dynamics analysis. Manufacturer-supplied data of a micropore screen and experimental results taken from an ex vivo test circuit were used to define the inputs needed for numerical modeling of a new filter design. Flow patterns, pressure distributions, and velocity profiles predicted with computational fluid dynamics softwarewere used to inform decisions on model refinements and how to achieve initial design goals of ≤225 mL prime volume and ≤500 cm2 of screen surface area. Predictions for optimal model geometry included a screen angle of 56° from the horizontal plane with a total surface area of 293.9 cm2 and a priming volume of 192.4 mL. This article describes in brief the developmental process used to advance a new filter design and supports the value of numerical modeling in this undertaking. PMID:23198394

Development of a new arterial-line filter design using computational fluid dynamics analysis.

PubMed

Herbst, Daniel P; Najm, Hani K

2012-09-01

Arterial-line filters used during extracorporeal circulation continue to rely on the physical properties of a wetted micropore and reductions in blood flow velocity to affect air separation from the circulating blood volume. Although problems associated with air embolism during cardiac surgery persist, a number of investigators have concluded that further improvements in filtration are needed to enhance air removal during cardiopulmonary bypass procedures. This article reviews theoretical principles of micropore filter technology and outlines the development of a new arterial-line filter concept using computational fluid dynamics analysis. Manufacturer-supplied data of a micropore screen and experimental results taken from an ex vivo test circuit were used to define the inputs needed for numerical modeling of a new filter design. Flow patterns, pressure distributions, and velocity profiles predicted with computational fluid dynamics software were used to inform decisions on model refinements and how to achieve initial design goals of < or = 225 mL prime volume and < or = 500 cm2 of screen surface area. Predictions for optimal model geometry included a screen angle of 56 degrees from the horizontal plane with a total surface area of 293.9 cm2 and a priming volume of 192.4 mL. This article describes in brief the developmental process used to advance a new filter design and supports the value of numerical modeling in this undertaking.

Impact of spectral nudging on the downscaling of tropical cyclones in regional climate simulations

NASA Astrophysics Data System (ADS)

Choi, Suk-Jin; Lee, Dong-Kyou

2016-06-01

This study investigated the simulations of three months of seasonal tropical cyclone (TC) activity over the western North Pacific using the Advanced Research WRF Model. In the control experiment (CTL), the TC frequency was considerably overestimated. Additionally, the tracks of some TCs tended to have larger radii of curvature and were shifted eastward. The large-scale environments of westerly monsoon flows and subtropical Pacific highs were unreasonably simulated. The overestimated frequency of TC formation was attributed to a strengthened westerly wind field in the southern quadrants of the TC center. In comparison with the experiment with the spectral nudging method, the strengthened wind speed was mainly modulated by large-scale flow that was greater than approximately 1000 km in the model domain. The spurious formation and undesirable tracks of TCs in the CTL were considerably improved by reproducing realistic large-scale atmospheric monsoon circulation with substantial adjustment between large-scale flow in the model domain and large-scale boundary forcing modified by the spectral nudging method. The realistic monsoon circulation took a vital role in simulating realistic TCs. It revealed that, in the downscaling from large-scale fields for regional climate simulations, scale interaction between model-generated regional features and forced large-scale fields should be considered, and spectral nudging is a desirable method in the downscaling method.

Influence of high-resolution surface databases on the modeling of local atmospheric circulation systems

NASA Astrophysics Data System (ADS)

Paiva, L. M. S.; Bodstein, G. C. R.; Pimentel, L. C. G.

2014-08-01

Large-eddy simulations are performed using the Advanced Regional Prediction System (ARPS) code at horizontal grid resolutions as fine as 300 m to assess the influence of detailed and updated surface databases on the modeling of local atmospheric circulation systems of urban areas with complex terrain. Applications to air pollution and wind energy are sought. These databases are comprised of 3 arc-sec topographic data from the Shuttle Radar Topography Mission, 10 arc-sec vegetation-type data from the European Space Agency (ESA) GlobCover project, and 30 arc-sec leaf area index and fraction of absorbed photosynthetically active radiation data from the ESA GlobCarbon project. Simulations are carried out for the metropolitan area of Rio de Janeiro using six one-way nested-grid domains that allow the choice of distinct parametric models and vertical resolutions associated to each grid. ARPS is initialized using the Global Forecasting System with 0.5°-resolution data from the National Center of Environmental Prediction, which is also used every 3 h as lateral boundary condition. Topographic shading is turned on and two soil layers are used to compute the soil temperature and moisture budgets in all runs. Results for two simulated runs covering three periods of time are compared to surface and upper-air observational data to explore the dependence of the simulations on initial and boundary conditions, grid resolution, topographic and land-use databases. Our comparisons show overall good agreement between simulated and observational data, mainly for the potential temperature and the wind speed fields, and clearly indicate that the use of high-resolution databases improves significantly our ability to predict the local atmospheric circulation.

Benchmark Simulation of Natural Circulation Cooling System with Salt Working Fluid Using SAM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, K. K.; Scarlat, R. O.; Hu, R.

Liquid salt-cooled reactors, such as the Fluoride Salt-Cooled High-Temperature Reactor (FHR), offer passive decay heat removal through natural circulation using Direct Reactor Auxiliary Cooling System (DRACS) loops. The behavior of such systems should be well-understood through performance analysis. The advanced system thermal-hydraulics tool System Analysis Module (SAM) from Argonne National Laboratory has been selected for this purpose. The work presented here is part of a larger study in which SAM modeling capabilities are being enhanced for the system analyses of FHR or Molten Salt Reactors (MSR). Liquid salt thermophysical properties have been implemented in SAM, as well as properties ofmore » Dowtherm A, which is used as a simulant fluid for scaled experiments, for future code validation studies. Additional physics modules to represent phenomena specific to salt-cooled reactors, such as freezing of coolant, are being implemented in SAM. This study presents a useful first benchmark for the applicability of SAM to liquid salt-cooled reactors: it provides steady-state and transient comparisons for a salt reactor system. A RELAP5-3D model of the Mark-1 Pebble-Bed FHR (Mk1 PB-FHR), and in particular its DRACS loop for emergency heat removal, provides steady state and transient results for flow rates and temperatures in the system that are used here for code-to-code comparison with SAM. The transient studied is a loss of forced circulation with SCRAM event. To the knowledge of the authors, this is the first application of SAM to FHR or any other molten salt reactors. While building these models in SAM, any gaps in the code’s capability to simulate such systems are identified and addressed immediately, or listed as future improvements to the code.« less

Numerical models of caldera deformation: Effects of multiphase and multicomponent hydrothermal fluid flow

USGS Publications Warehouse

Hutnak, M.; Hurwitz, S.; Ingebritsen, S.E.; Hsieh, P.A.

2009-01-01

Ground surface displacement (GSD) in large calderas is often interpreted as resulting from magma intrusion at depth. Recent advances in geodetic measurements of GSD, notably interferometric synthetic aperture radar, reveal complex and multifaceted deformation patterns that often require complex source models to explain the observed GSD. Although hydrothermal fluids have been discussed as a possible deformation agent, very few quantitative studies addressing the effects of multiphase flow on crustal mechanics have been attempted. Recent increases in the power and availability of computing resources allow robust quantitative assessment of the complex time-variant thermal interplay between aqueous fluid flow and crustal deformation. We carry out numerical simulations of multiphase (liquid-gas), multicomponent (H 2O-CO2) hydrothermal fluid flow and poroelastic deformation using a range of realistic physical parameters and processes. Hydrothermal fluid injection, circulation, and gas formation can generate complex, temporally and spatially varying patterns of GSD, with deformation rates, magnitudes, and geometries (including subsidence) similar to those observed in several large calderas. The potential for both rapid and gradual deformation resulting from magma-derived fluids suggests that hydrothermal fluid circulation may help explain deformation episodes at calderas that have not culminated in magmatic eruption.

A blood circulation model for reference man

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leggett, R.W.; Eckerman, K.F.; Williams, L.R.

This paper describes a dynamic blood circulation model that predicts the movement and gradual dispersal of a bolus of material in the circulation after its intravascular injection into an adult human. The main purpose of the model is to improve the dosimetry of internally deposited radionuclides that decay in the circulation to a significant extent. The total blood volume is partitioned into the blood contents of 24 separate organs or tissues, right heart chambers, left heart chambers, pulmonary circulation, arterial outflow to the systemic tissues (aorta and large arteries), and venous return from the systemic tissues (large veins). As amore » compromise between physical reality and computational simplicity, the circulation of blood is viewed as a system of first-order transfers between blood pools, with the delay time depending on the mean transit time across the pool. The model allows consideration of incomplete, tissue-dependent extraction of material during passage through the circulation and return of material from tissues to plasma.« less

Solar related waves in the Venusian atmosphere from the cloud tops to 100 km

NASA Technical Reports Server (NTRS)

Elson, L. S.

1983-01-01

A quasi-linear diagnostic model using observed solar-related temperatures and a specified solar mean circulation and surface structure to find the solar-related circulation above the clouds of Venus is presented. Despite the greater dependence of model-derived, solar-related circulation on the mean flow than is the case for terrestrial tides, as well as the uncertainty concerning this mean flow, significant conclusions are drawn for the solar-related circulation and thermal structure of Venus. An anomalously large response is found in the polar regions, due to the model's requirement of a process such as dissipation which will act as a major sink for momentum. Dissipation is specified in the model as Rayleigh friction with an unknown free parameter coefficient. In view of this, dissipation is either very efficient by terrestrial standards and accompanied by small solar-related circulation, or similar to that of earth and possessed of a circulation large enough to have an impact on the mean circulation.

Tropical Rainfall Measuring Mission: Monitoring the Global Tropics for 3 Years and Beyond. 1.1

NASA Technical Reports Server (NTRS)

Shepherd, Marshall; Starr, David OC. (Technical Monitor)

2001-01-01

The Tropical Rainfall Measuring Mission (TRMM) was launched in November 1997 as a joint U.S.-Japanese mission to advance understanding of the global energy and water cycle by providing distributions of rainfall and latent heating over the global tropics. As a part of NASA's Earth System Enterprise, TRMM seeks to understand the mechanisms through which changes in tropical rainfall influence global circulation. Additionally, a goal is to improve the ability to model these processes in order to predict global circulations and rainfall variability at monthly and longer time scales. Such understanding has implications for assessing climate processes related to El Nino/La Nina and Global Warming. TRMM has also provided unexpected and exciting new knowledge and applications in areas related to hurricane monitoring, lightning, pollution, hydrology, and other areas. This CD-ROM includes a self-contained PowerPoint presentation that provides an overview of TRMM and significant science results; a set of data movies or animation; and listings of current TRMM-related publications in the literature.

Design Construction and Operation of a Supercritical Carbon Dioxide (sCO 2) Loop for Investigation of Dry Cooling and Natural Circulation Potential for Use in Advanced Small Modular Reactors Utilizing sCO 2 Power Conversion Cycles.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Middleton, Bobby D.; Rodriguez, Salvador B.; Carlson, Matthew David

This report outlines the work completed for a Laboratory Directed Research and Development project at Sandia National Laboratories from October 2012 through September 2015. An experimental supercritical carbon dioxide (sCO 2 ) loop was designed, built, and o perated. The experimental work demonstrated that sCO 2 can be uti lized as the working fluid in an air - cooled, natural circulation configuration to transfer heat from a source to the ultimate heat sink, which is the surrounding ambient environment in most ca ses. The loop was also operated in an induction - heated, water - cooled configuration that allows formore » measurements of physical parameters that are difficult to isolate in the air - cooled configuration. Analysis included the development of two computational flu id dynamics models. Future work is anticipated to answer questions that were not covered in this project.« less

Isolation and Characterization of Circulating Tumor Cells in Squamous Cell Carcinoma of the Lung Using a Non-EpCAM-Based Capture Method.

PubMed

Bozzetti, Cecilia; Quaini, Federico; Squadrilli, Anna; Tiseo, Marcello; Frati, Caterina; Lagrasta, Costanza; Azzoni, Cinzia; Bottarelli, Lorena; Galetti, Maricla; Alama, Angela; Belletti, Silvana; Gatti, Rita; Passaro, Antonio; Gradilone, Angela; Cavazzoni, Andrea; Alfieri, Roberta; Petronini, Pier Giorgio; Bonelli, Mara; Falco, Angela; Carubbi, Cecilia; Pedrazzi, Giuseppe; Nizzoli, Rita; Naldi, Nadia; Pinto, Carmine; Ardizzoni, Andrea

2015-01-01

The exclusion of circulating tumor cells (CTCs) that have lost epithelial antigens during the epithelial-to-mesenchymal transition (EMT) process by using Epithelial Cell Adhesion Molecule (EpCAM) based capture methods is still a matter of debate. In this study, cells obtained after depletion procedure from blood samples of squamous cell lung cancer (SQCLC) patients were identified based on morphology and characterized with the combination of FISH assessment and immunophenotypic profile. Five mL blood samples, collected from 55 advanced SQCLC patients, were analyzed by a non-EpCAM-based capture method. After depletion of leukocytes and erythroid cells, the negative fraction was characterized by both FISH using a fibroblast growth factor receptor 1 (FGFR1) probe and by immunocytochemistry. Thirty healthy donors were also tested. Based on morphology (nuclear dimension ≥10 μm, shape and hypercromatic aspect) suspicious circulating cells clearly distinguishable from contaminant leukocytes were observed in 49/55 (89%) SQCLC patients. Thirty-four of the 44 (77%) samples evaluable for FGFR1 FISH showed ≥ 6 FGFR1 gene copy number on average per cell. Vimentin expression involved 43% (18/42) of pooled circulating SQCLC cells, whereas only 29% (14/48) were EpCAM positive. Confocal microscopy confirmed the localization of FGFR1 probe in suspicious circulating cells. Suspicious circulating elements were also observed in healthy donors and did not show any epithelial associated antigens. A significantly lower number of suspicious circulating cells in healthy donors compared to SQCLC patients was found. Among the heterogeneous cell population isolated by depletion procedure, the coexistence of cells with epithelial and/or mesenchymal phenotype suggests that EMT may participate to transendothelial invasion and migration of tumor cells in advanced SQCLC. The finding of cells with neither EpCAM or EMT phenotype, retrieved after non-EpCAM-based systems, underlines the presence of suspicious elements in the blood of both SQCLC patients and healthy donors. Further phenotyping and molecular analyses are necessary to fully characterize these circulating elements.

Circulating amino acids and the risk of macrovascular, microvascular and mortality outcomes in individuals with type 2 diabetes: results from the ADVANCE trial.

PubMed

Welsh, Paul; Rankin, Naomi; Li, Qiang; Mark, Patrick B; Würtz, Peter; Ala-Korpela, Mika; Marre, Michel; Poulter, Neil; Hamet, Pavel; Chalmers, John; Woodward, Mark; Sattar, Naveed

2018-05-04

We aimed to quantify the association of individual circulating amino acids with macrovascular disease, microvascular disease and all-cause mortality in individuals with type 2 diabetes. We performed a case-cohort study (N = 3587), including 655 macrovascular events, 342 microvascular events (new or worsening nephropathy or retinopathy) and 632 all-cause mortality events during follow-up, in a secondary analysis of the Action in Diabetes and Vascular Disease: Preterax and Diamicron Modified Release Controlled Evaluation (ADVANCE) study. For this study, phenylalanine, isoleucine, glutamine, leucine, alanine, tyrosine, histidine and valine were measured in stored plasma samples by proton NMR metabolomics. Hazard ratios were modelled per SD increase in each amino acid. In models investigating associations and potential mechanisms, after adjusting for age, sex and randomised treatment, phenylalanine was positively, and histidine inversely, associated with macrovascular disease risk. These associations were attenuated to the null on further adjustment for extended classical risk factors (including eGFR and urinary albumin/creatinine ratio). After adjustment for extended classical risk factors, higher tyrosine and alanine levels were associated with decreased risk of microvascular disease (HR 0.78; 95% CI 0.67, 0.91 and HR 0.86; 95% CI 0.76, 0.98, respectively). Higher leucine (HR 0.79; 95% CI 0.69, 0.90), histidine (HR 0.89; 95% CI 0.81, 0.99) and valine (HR 0.79; 95% CI 0.70, 0.88) levels were associated with lower risk of mortality. Investigating the predictive ability of amino acids, addition of all amino acids to a risk score modestly improved classification of participants for macrovascular (continuous net reclassification index [NRI] +35.5%, p < 0.001) and microvascular events (continuous NRI +14.4%, p = 0.012). We report distinct associations between circulating amino acids and risk of different major complications of diabetes. Low tyrosine appears to be a marker of microvascular risk in individuals with type 2 diabetes independently of fundamental markers of kidney function.

Complex mean circulation over the inner shelf south of Martha's Vineyard revealed by observations and a high-resolution model

USGS Publications Warehouse

Ganju, Neil K.; Lentz, Steven J.; Kirincich, Anthony R.; Farrar, J. Thomas

2011-01-01

Inner-shelf circulation is governed by the interaction between tides, baroclinic forcing, winds, waves, and frictional losses; the mean circulation ultimately governs exchange between the coast and ocean. In some cases, oscillatory tidal currents interact with bathymetric features to generate a tidally rectified flow. Recent observational and modeling efforts in an overlapping domain centered on the Martha's Vineyard Coastal Observatory (MVCO) provided an opportunity to investigate the spatial and temporal complexity of circulation on the inner shelf. ADCP and surface radar observations revealed a mean circulation pattern that was highly variable in the alongshore and cross-shore directions. Nested modeling incrementally improved representation of the mean circulation as grid resolution increased and indicated tidal rectification as the generation mechanism of a counter-clockwise gyre near the MVCO. The loss of model skill with decreasing resolution is attributed to insufficient representation of the bathymetric gradients (Δh/h), which is important for representing nonlinear interactions between currents and bathymetry. The modeled momentum balance was characterized by large spatial variability of the pressure gradient and horizontal advection terms over short distances, suggesting that observed inner-shelf momentum balances may be confounded. Given the available observational and modeling data, this work defines the spatially variable mean circulation and its formation mechanism—tidal rectification—and illustrates the importance of model resolution for resolving circulation and constituent exchange near the coast. The results of this study have implications for future observational and modeling studies near the MVCO and other inner-shelf locations with alongshore bathymetric variability.

Studying platinum sensitivity and resistance in high-grade serous ovarian cancer: Different models for different questions.

PubMed

Alkema, Nicolette G; Wisman, G Bea A; van der Zee, Ate G J; van Vugt, Marcel A T M; de Jong, Steven

2016-01-01

High-grade serous ovarian cancer (HGSOC) has the highest mortality rate among all gynecological cancers. Patients are generally diagnosed in an advanced stage with the majority of cases displaying platinum resistant relapses. Recent genomic interrogation of large numbers of HGSOC patient samples indicated high complexity in terms of genetic aberrations, intra- and intertumor heterogeneity and underscored their lack of targetable oncogenic mutations. Sub-classifications of HGSOC based on expression profiles, termed 'differentiated', 'immunoreactive', 'mesenchymal' and 'proliferative', were shown to have prognostic value. In addition, in almost half of all HGSOC patients, a deficiency in homologous recombination (HR) was found that potentially can be targeted using PARP inhibitors. Developing precision medicine requires advanced experimental models. In the current review, we discuss experimental HGSOC models in which resistance to platinum therapy and the use of novel therapeutics can be carefully studied. Panels of better-defined primary cell lines need to be established to capture the full spectrum of HGSOC subtypes. Further refinement of cell lines is obtained with a 3-dimensional culture model mimicking the tumor microenvironment. Alternatively, ex vivo ovarian tumor tissue slices are used. For in vivo studies, larger panels of ovarian cancer patient-derived xenografts (PDXs) are being established, encompassing all expression subtypes. Ovarian cancer PDXs grossly retain tumor heterogeneity and clinical response to platinum therapy is preserved. PDXs are currently used in drug screens and as avatars for patient response. The role of the immune system in tumor responses can be assessed using humanized PDXs and immunocompetent genetically engineered mouse models. Dynamic tracking of genetic alterations in PDXs as well as patients during treatment and after relapse is feasible by sequencing circulating cell-free tumor DNA and analyzing circulating tumor cells. We discuss how various models and methods can be combined to delineate the molecular mechanisms underlying platinum resistance and to select HGSOC patients other than BRCA1/2-mutation carriers that could potentially benefit from the synthetic lethality of PARP inhibitors. This integrated approach is a first step to improve therapy outcomes in specific subgroups of HGSOC patients. Copyright © 2015 Elsevier Ltd. All rights reserved.

(abstract) Using TOPEX/Poseidon Sea Level Observations to Test the Sensitivity of an Ocean Model to Wind Forcing

NASA Technical Reports Server (NTRS)

Fu, Lee-Lueng; Chao, Yi

1996-01-01

It has been demonstrated that current-generation global ocean general circulation models (OGCM) are able to simulate large-scale sea level variations fairly well. In this study, a GFDL/MOM-based OGCM was used to investigate its sensitivity to different wind forcing. Simulations of global sea level using wind forcing from the ERS-1 Scatterometer and the NMC operational analysis were compared to the observations made by the TOPEX/Poseidon (T/P) radar altimeter for a two-year period. The result of the study has demonstrated the sensitivity of the OGCM to the quality of wind forcing, as well as the synergistic use of two spaceborne sensors in advancing the study of wind-driven ocean dynamics.

An Intercomparison of the Dynamical Cores of Global Atmospheric Circulation Models for Mars

NASA Technical Reports Server (NTRS)

Hollingsworth, Jeffery L.; Bridger, Alison F. C.; Haberle, Robert M.

1998-01-01

This is a Final Report for a Joint Research Interchange (JRI) between NASA Ames Research Center and San Jose State University, Department of Meteorology. The focus of this JRI has been to evaluate the dynamical 'cores' of two global atmospheric circulation models for Mars that are in operation at the NASA Ames Research Center. The two global circulation models in use are fundamentally different: one uses spherical harmonics in its horizontal representation of field variables; the other uses finite differences on a uniform longitude-latitude grid. Several simulations have been conducted to assess how the dynamical processors of each of these circulation models perform using identical 'simple physics' parameterizations. A variety of climate statistics (e.g., time-mean flows and eddy fields) have been compared for realistic solstitial mean basic states. Results of this research have demonstrated that the two Mars circulation models with completely different spatial representations and discretizations produce rather similar circulation statistics for first-order meteorological fields, suggestive of a tendency for convergence of numerical solutions. Second and higher-order fields can, however, vary significantly between the two models.

An Intercomparison of the Dynamical Cores of Global Atmospheric Circulation Models for Mars

NASA Technical Reports Server (NTRS)

Hollingsworth, Jeffery L.; Bridger, Alison F. C.; Haberle, Robert M.

1998-01-01

This is a Final Report for a Joint Research Interchange (JRI) between NASA Ames Research Cen- ter and San Jose State University, Department of Meteorology. The focus of this JRI has been to evaluate the dynamical "cores" of two global atmospheric circulation models for Mars that are in operation at the NASA Ames Research Center. ne two global circulation models in use are fundamentally different: one uses spherical harmonics in its horizontal representation of field variables; the other uses finite differences on a uniform longitude-latitude grid. Several simulations have been conducted to assess how the dynamical processors of each of these circulation models perform using identical "simple physics" parameterizations. A variety of climate statistics (e.g., time-mean flows and eddy fields) have been compared for realistic solstitial mean basic states. Results of this research have demonstrated that the two Mars circulation models with completely different spatial representations and discretizations produce rather similar circulation statistics for first-order meteorological fields, suggestive of a tendency for convergence of numerical solutions. Second and higher-order fields can, however, vary significantly between the two models.

Advances in pancreatic cancer research: moving towards early detection.

PubMed

He, Xiang-Yi; Yuan, Yao-Zong

2014-08-28

Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal forms of cancer. Substantial progress has been made in the understanding of the biology of pancreatic cancer, and advances in patient management have been significant. However, most patients (nearly 80%) who present with locally advanced or metastatic disease have an extremely poor prognosis. Survival is better for those with malignant disease localized to the pancreas, because surgical resection at present offers the only chance of cure. Therefore, the early detection of pancreatic cancer may benefit patients with PDAC. However, its low rate of incidence and the limitations of current screening strategies make early detection difficult. Recent advances in the understanding of the pathogenesis of PDAC suggest that it is possible to detect PDAC in early stages and even identify precursor lesions. The presence of new-onset diabetes mellitus in the early phase of pancreatic cancer may provide clues for its early diagnosis. Advances in the identification of novel circulating biomarkers including serological signatures, autoantibodies, epigenetic markers, circulating tumor cells and microRNAs suggest that they can be used as potential tools for the screening of precursors and early stage PDAC in the future. However, proper screening strategies based on effective screening methodologies need to be tested for clinical application.

Issues in the Pharmacokinetics of Trichloroethylene and Its Metabolites

PubMed Central

Chiu, Weihsueh A.; Okino, Miles S.; Lipscomb, John C.; Evans, Marina V.

2006-01-01

Much progress has been made in understanding the complex pharmacokinetics of trichloroethylene (TCE). Qualitatively, it is clear that TCE is metabolized to multiple metabolites either locally or into systemic circulation. Many of these metabolites are thought to have toxicologic importance. In addition, efforts to develop physiologically based pharmacokinetic (PBPK) models have led to a better quantitative assessment of the dosimetry of TCE and several of its metabolites. As part of a mini-monograph on key issues in the health risk assessment of TCE, this article is a review of a number of the current scientific issues in TCE pharmacokinetics and recent PBPK modeling efforts with a focus on literature published since 2000. Particular attention is paid to factors affecting PBPK modeling for application to risk assessment. Recent TCE PBPK modeling efforts, coupled with methodologic advances in characterizing uncertainty and variability, suggest that rigorous application of PBPK modeling to TCE risk assessment appears feasible at least for TCE and its major oxidative metabolites trichloroacetic acid and trichloroethanol. However, a number of basic structural hypotheses such as enterohepatic recirculation, plasma binding, and flow- or diffusion-limited treatment of tissue distribution require additional evaluation and analysis. Moreover, there are a number of metabolites of potential toxicologic interest, such as chloral, dichloroacetic acid, and those derived from glutathione conjugation, for which reliable pharmacokinetic data is sparse because of analytical difficulties or low concentrations in systemic circulation. It will be a challenge to develop reliable dosimetry for such cases. PMID:16966104

Circulation and rainfall climatology of a 10-year (1979 - 1988) integration with the Goddard Laboratory for atmospheres general circulation model

NASA Technical Reports Server (NTRS)

Kim, J.-H.; Sud, Y. C.

1993-01-01

A 10-year (1979-1988) integration of Goddard Laboratory for Atmospheres (GLA) general circulation model (GCM) under Atmospheric Model Intercomparison Project (AMIP) is analyzed and compared with observation. The first momentum fields of circulation variables and also hydrological variables including precipitation, evaporation, and soil moisture are presented. Our goals are (1) to produce a benchmark documentation of the GLA GCM for future model improvements; (2) to examine systematic errors between the simulated and the observed circulation, precipitation, and hydrologic cycle; (3) to examine the interannual variability of the simulated atmosphere and compare it with observation; and (4) to examine the ability of the model to capture the major climate anomalies in response to events such as El Nino and La Nina. The 10-year mean seasonal and annual simulated circulation is quite reasonable compared to the analyzed circulation, except the polar regions and area of high orography. Precipitation over tropics are quite well simulated, and the signal of El Nino/La Nina episodes can be easily identified. The time series of evaporation and soil moisture in the 12 biomes of the biosphere also show reasonable patterns compared to the estimated evaporation and soil moisture.

Circulating Selenium and Prostate Cancer Risk: A Mendelian Randomization Analysis.

PubMed

Yarmolinsky, James; Bonilla, Carolina; Haycock, Philip C; Langdon, Ryan J Q; Lotta, Luca A; Langenberg, Claudia; Relton, Caroline L; Lewis, Sarah J; Evans, David M; Davey Smith, George; Martin, Richard M

2018-05-17

In the Selenium and Vitamin E Cancer Prevention Trial (SELECT), selenium supplementation (causing a median 114 μg/L increase in circulating selenium) did not lower overall prostate cancer risk, but increased risk of high-grade prostate cancer and type 2 diabetes. Mendelian randomization analysis uses genetic variants to proxy modifiable risk factors and can strengthen causal inference in observational studies. We constructed a genetic instrument comprising 11 single nucleotide polymorphisms robustly (P < 5 × 10-8) associated with circulating selenium in genome-wide association studies. In a Mendelian randomization analysis of 72 729 men in the PRACTICAL Consortium (44 825 case subjects, 27 904 control subjects), 114 μg/L higher genetically elevated circulating selenium was not associated with prostate cancer (odds ratio [OR] = 1.01, 95% confidence interval [CI] = 0.89 to 1.13). In concordance with findings from SELECT, selenium was weakly associated with advanced (including high-grade) prostate cancer (OR = 1.21, 95% CI = 0.98 to 1.49) and type 2 diabetes (OR = 1.18, 95% CI = 0.97 to 1.43; in a type 2 diabetes genome-wide association study meta-analysis with up to 49 266 case subjects and 249 906 control subjects). Our Mendelian randomization analyses do not support a role for selenium supplementation in prostate cancer prevention and suggest that supplementation could have adverse effects on risks of advanced prostate cancer and type 2 diabetes.

An Isopycnal Box Model with predictive deep-ocean structure for biogeochemical cycling applications

NASA Astrophysics Data System (ADS)

Goodwin, Philip

2012-07-01

To simulate global ocean biogeochemical tracer budgets a model must accurately determine both the volume and surface origins of each water-mass. Water-mass volumes are dynamically linked to the ocean circulation in General Circulation Models, but at the cost of high computational load. In computationally efficient Box Models the water-mass volumes are simply prescribed and do not vary when the circulation transport rates or water mass densities are perturbed. A new computationally efficient Isopycnal Box Model is presented in which the sub-surface box volumes are internally calculated from the prescribed circulation using a diffusive conceptual model of the thermocline, in which upwelling of cold dense water is balanced by a downward diffusion of heat. The volumes of the sub-surface boxes are set so that the density stratification satisfies an assumed link between diapycnal diffusivity, κd, and buoyancy frequency, N: κd = c/(Nα), where c and α are user prescribed parameters. In contrast to conventional Box Models, the volumes of the sub-surface ocean boxes in the Isopycnal Box Model are dynamically linked to circulation, and automatically respond to circulation perturbations. This dynamical link allows an important facet of ocean biogeochemical cycling to be simulated in a highly computationally efficient model framework.

Computational models of the pulmonary circulation: Insights and the move towards clinically directed studies

PubMed Central

Tawhai, Merryn H.; Clark, Alys R.; Burrowes, Kelly S.

2011-01-01

Biophysically-based computational models provide a tool for integrating and explaining experimental data, observations, and hypotheses. Computational models of the pulmonary circulation have evolved from minimal and efficient constructs that have been used to study individual mechanisms that contribute to lung perfusion, to sophisticated multi-scale and -physics structure-based models that predict integrated structure-function relationships within a heterogeneous organ. This review considers the utility of computational models in providing new insights into the function of the pulmonary circulation, and their application in clinically motivated studies. We review mathematical and computational models of the pulmonary circulation based on their application; we begin with models that seek to answer questions in basic science and physiology and progress to models that aim to have clinical application. In looking forward, we discuss the relative merits and clinical relevance of computational models: what important features are still lacking; and how these models may ultimately be applied to further increasing our understanding of the mechanisms occurring in disease of the pulmonary circulation. PMID:22034608

Goddard Cumulus Ensemble (GCE) Model: Application for Understanding Preciptation Processes

NASA Technical Reports Server (NTRS)

Tao, Wei-Kuo; Einaudi, Franco (Technical Monitor)

2000-01-01

The global hydrological cycle is central to climate system interactions and the key to understanding their behavior. Rainfall and its associated precipitation processes are a key link in the hydrologic cycle. Fresh water provided by tropical rainfall and its variability can exert a large impact upon the structure of the upper ocean layer. In addition, approximately two-thirds of the global rain falls in the Tropics, while the associated latent heat release accounts for about three-fourths of the total heat energy for the Earth's atmosphere. Precipitation from convective cloud systems comprises a large portion of tropical heating and rainfall. Furthermore, the vertical distribution of convective latent-heat releases modulates large-scale tropical circulations (e.g., the 30-60-day intraseasonal oscillation), which, in turn, impacts midlatitude weather through teleconnection patterns such as those associated with El Nino. Shifts in these global circulations can result in prolonged periods of droughts and floods, thereby exerting a tremendous impact upon the biosphere and human habitation. And yet, monthly rainfall over the tropical oceans is still not known within a factor of two over large (5 degrees latitude by 5 degrees longitude) areas. Hence, the Tropical Rainfall Measuring Mission (TRMM), a joint U.S./Japan space project, can provide a more accurate measurement of rainfall as well as estimate the four-dimensional structure of diabatic heating over the global tropics. The distributions of rainfall and inferred heating can be used to advance our understanding of the global energy and water cycle. In addition, this information can be used for global circulation and climate models for testing and improving their parameterizations.

Synchoronous inter-hemispheric alpine glacier advances during the Late Glacial?

NASA Astrophysics Data System (ADS)

Bakke, Jostein; Paasche, Øyvind

2016-04-01

The termination of the last glaciation in both hemispheres was a period of rapid climate swings superimposed on the overall warming trend, resulting from large-scale reorganizations of the atmospheric and oceanic circulation patterns in both hemispheres. Environmental changes during the deglaciation have been inferred from proxy records, as well as by model simulations. Several oscillations took place both in northern and southern hemispheres caused by melt water releases such as during the Younger Dryas in north and the Antarctic Cold Reversal in south. However, a consensus on the hemispheric linkages through ocean and atmosphere are yet to be reached. Here we present a new multi-proxy reconstruction from a sub-annually resolved lake sediment record from Lake Lusvatnet in Arctic Norway compared with a new reconstruction from the same time interval at South Georgia, Southern Ocean, suggesting inter-hemispheric climate linkages during the Bølling/Allerød time period. Our reconstruction of the alpine glacier in the lake Lusvatnet catchment show a synchronous glacier advance with the Birch-hill moraine complex in the Southern Alps, New Zealand during the Intra Allerød Cooling period. We propose these inter hemispheric climate swings to be forced by the northward migration of the southern Subtropical Front during the Antarctic Cold Reversal. Such a northward migration of the Subtropical Front is shown in model simulation and in palaeorecords to reduce the Agulhas leakage impacting the strength of the Atlantic meridional overturning circulation. We simply ask if this can be the carrier of rapid climate swings from one hemisphere to another? Our high-resolution reconstructions provide the basis for an enhanced understanding of the tiny balance between migration of the Subtropical Front in the Southern Ocean and the teleconnection to northern hemisphere.

Mantle dynamics and seismic tomography

PubMed Central

Tanimoto, Toshiro; Lay, Thorne

2000-01-01

Three-dimensional imaging of the Earth's interior, called seismic tomography, has achieved breakthrough advances in the last two decades, revealing fundamental geodynamical processes throughout the Earth's mantle and core. Convective circulation of the entire mantle is taking place, with subducted oceanic lithosphere sinking into the lower mantle, overcoming the resistance to penetration provided by the phase boundary near 650-km depth that separates the upper and lower mantle. The boundary layer at the base of the mantle has been revealed to have complex structure, involving local stratification, extensive structural anisotropy, and massive regions of partial melt. The Earth's high Rayleigh number convective regime now is recognized to be much more interesting and complex than suggested by textbook cartoons, and continued advances in seismic tomography, geodynamical modeling, and high-pressure–high-temperature mineral physics will be needed to fully quantify the complex dynamics of our planet's interior. PMID:11035784

Magnetic resonance imaging-guided surgical design: can we optimise the Fontan operation?

PubMed

Haggerty, Christopher M; Yoganathan, Ajit P; Fogel, Mark A

2013-12-01

The Fontan procedure, although an imperfect solution for children born with a single functional ventricle, is the only reconstruction at present short of transplantation. The haemodynamics associated with the total cavopulmonary connection, the modern approach to Fontan, are severely altered from the normal biventricular circulation and may contribute to the long-term complications that are frequently noted. Through recent technological advances, spear-headed by advances in medical imaging, it is now possible to virtually model these surgical procedures and evaluate the patient-specific haemodynamics as part of the pre-operative planning process. This is a novel paradigm with the potential to revolutionise the approach to Fontan surgery, help to optimise the haemodynamic results, and improve patient outcomes. This review provides a brief overview of these methods, presents preliminary results of their clinical usage, and offers insights into its potential future directions.

Seasonal overturning circulation in the Red Sea: 2. Winter circulation

NASA Astrophysics Data System (ADS)

Yao, Fengchao; Hoteit, Ibrahim; Pratt, Larry J.; Bower, Amy S.; Köhl, Armin; Gopalakrishnan, Ganesh; Rivas, David

2014-04-01

The shallow winter overturning circulation in the Red Sea is studied using a 50 year high-resolution MITgcm (MIT general circulation model) simulation with realistic atmospheric forcing. The overturning circulation for a typical year, represented by 1980, and the climatological mean are analyzed using model output to delineate the three-dimensional structure and to investigate the underlying dynamical mechanisms. The horizontal model circulation in the winter of 1980 is dominated by energetic eddies. The climatological model mean results suggest that the surface inflow intensifies in a western boundary current in the southern Red Sea that switches to an eastern boundary current north of 24°N. The overturning is accomplished through a cyclonic recirculation and a cross-basin overturning circulation in the northern Red Sea, with major sinking occurring along a narrow band of width about 20 km along the eastern boundary and weaker upwelling along the western boundary. The northward pressure gradient force, strong vertical mixing, and horizontal mixing near the boundary are the essential dynamical components in the model's winter overturning circulation. The simulated water exchange is not hydraulically controlled in the Strait of Bab el Mandeb; instead, the exchange is limited by bottom and lateral boundary friction and, to a lesser extent, by interfacial friction due to the vertical viscosity at the interface between the inflow and the outflow.

On the role of circulation changes in future Northern Hemisphere hydroclimate change

NASA Astrophysics Data System (ADS)

Seager, R.; Ting, M.; Simpson, I.; Shaw, T.

2015-12-01

The "dry-get-drier, wet-get-wetter", otherwise known as "rich-get-richer, poor-get-poorer" concept of the hydrological cycle response to rising greenhouse gases was a major advance in terms of perception of climate change in the research community and the winder public. It provides a good description of hydroclimate change in many regions but especially over the oceans. Here there is a clear divide between wet regions, with positive precipitation minus evaporation (P-E), and dry regions with negative P-E. However over land, long term P-E is either zero or positive and balanced by streamflow and it is not so simple to divide between wet and dry regions. What is more, the simple wet-get-wetter, dry-get-drier paradigm is based only on thermodynamics with rising humidity causing increased amplitude of moisture convergence and moisture divergence and, hence, larger variations in P-E. It is now being realized more and more that changes in atmospheric circulation can also drive changes in moisture convergence/divergence and that a full explanation of hydrological cycle change requires attention to circulation change. This will be illustrated with reference to North America and the Mediterranean region. In both case changes in the mean circulation are important drivers of regional hydroclimate change. Model-projected North American hydroclimate change in winter is strongly influenced by a lengthening of the zonal scale of intermediate-scale stationary waves forced by extratropical heating. Wetting at the west coast, drying in the interior southwest and wetting at the US east coast are stronger in models that have a climatological wave field that exaggerates these waves than in models that have more realistic amplitude wave fields. Intense Mediterranean region drying in both summer and winter is also explained in part by shifts towards regional high pressure that, as of now, have not been fully explained. In neither southwest North America nor the Mediterranean, despite the importance of storm systems in delivering moisture to the regions, is projected drying caused by reduced transient eddy moisture convergence. Instead thermodynamic drying and mean flow changes share the responsibility for shifting the regions to drier, more water-stressed, climates.

Cloud-radiation interactions and their parameterization in climate models

NASA Technical Reports Server (NTRS)

1994-01-01

This report contains papers from the International Workshop on Cloud-Radiation Interactions and Their Parameterization in Climate Models met on 18-20 October 1993 in Camp Springs, Maryland, USA. It was organized by the Joint Working Group on Clouds and Radiation of the International Association of Meteorology and Atmospheric Sciences. Recommendations were grouped into three broad areas: (1) general circulation models (GCMs), (2) satellite studies, and (3) process studies. Each of the panels developed recommendations on the themes of the workshop. Explicitly or implicitly, each panel independently recommended observations of basic cloud microphysical properties (water content, phase, size) on the scales resolved by GCMs. Such observations are necessary to validate cloud parameterizations in GCMs, to use satellite data to infer radiative forcing in the atmosphere and at the earth's surface, and to refine the process models which are used to develop advanced cloud parameterizations.

Tracer transport by the diabatic circulation deduced from satellite observations

NASA Technical Reports Server (NTRS)

Solomon, S.; Kiehl, J. T.; Garcia, R. R.; Grose, W.

1986-01-01

Nimbus-7 sensor data were used to track the diabatic circulation in the stratosphere to study the advective transport of CH4 and N2O as tracer species. Advective transport by the mean circulation was found to be a function of the temperature field and associated deviations from radiative equilibrium. A photochemical model was applied to account for the disappearance of the tracer species from the stratosphere. Comparisons between the SAMS data and modeling on the basis of the chemical loss rates of the tracers and the LIMS circulation data showed that the model predictions underestimated the resident abundances, although the global distributions and circulations exhibited a good match.

Does coupled ocean enhance ozone-hole-induced Southern Hemisphere circulation changes?

NASA Astrophysics Data System (ADS)

Son, S. W.; Han, B. R.; Kim, S. Y.; Park, R.

2017-12-01

The ozone-hole-induced Southern Hemisphere (SH) circulation changes, such as poleward shift of westerly jet and Hadley cell widening, have been typically explored with either coupled general circulation models (CGCMs) prescribing stratospheric ozone or chemistry-climate models (CCMs) prescribing surface boundary conditions. Only few studies have utilized ocean-coupled CCMs with a relatively coarse resolution. To better quantify the role of interactive chemistry and coupled ocean in the ozone-hole-induced SH circulation changes, the present study examines a set of CGCM and CCM simulations archived for the Coupled Model Intercomparison Project phase 5 (CMIP5) and CCM initiative (CCMI). Although inter-model spread of Antarctic ozone depletion is substantially large especially in the austral spring, both CGCMs with relatively simple ozone chemistry and CCMs with fully interactive comprehensive chemistry reasonably well reproduce long-term trends of Antarctic ozone and the associated polar-stratospheric temperature changes. Most models reproduce a poleward shift of SH jet and Hadley-cell widening in the austral summer in the late 20th century as identified in reanalysis datasets. These changes are quasi-linearly related with Antarctic ozone changes, confirming the critical role of Antarctic ozone depletion in the austral-summer zonal-mean circulation changes. The CGCMs with simple but still interactive ozone show slightly stronger circulation changes than those with prescribed ozone. However, the long-term circulation changes in CCMs are largely insensitive to the coupled ocean. While a few models show the enhanced circulation changes when ocean is coupled, others show essentially no changes or even weakened circulation changes. This result suggests that the ozone-hole-related stratosphere-troposphere coupling in the late 20th century may be only weakly sensitive to the coupled ocean.

Designsafe-Ci a Cyberinfrastructure for Natural Hazard Simulation and Data

NASA Astrophysics Data System (ADS)

Dawson, C.; Rathje, E.; Stanzione, D.; Padgett, J.; Pinelli, J. P.

2017-12-01

DesignSafe is the web-based research platform of the Natural Hazards Engineering Research Infrastructure (NHERI) network that provides the computational tools needed to manage and analyze critical data for natural hazards research, with wind and storm surge related hazards being a primary focus. One of the simulation tools under DesignSafe is the Advanced Circulation (ADCIRC) model, a coastal ocean model used in storm surge analysis. ADCIRC is an unstructured, finite element model with high resolution capabilities for studying storm surge impacts, and has long been used in storm surge hind-casting and forecasting. In this talk, we will demonstrate the use of ADCIRC within the DesignSafe platform and its use for forecasting Hurricane Harvey. We will also demonstrate how to analyze, visualize and archive critical storm surge related data within DesignSafe.

A phase II and biomarker study of ramucirumab, a human monoclonal antibody targeting the VEGF receptor-2, as first-line monotherapy in patients with advanced hepatocellular cancer.

PubMed

Zhu, Andrew X; Finn, Richard S; Mulcahy, Mary; Gurtler, Jayne; Sun, Weijing; Schwartz, Jonathan D; Dalal, Rita P; Joshi, Adarsh; Hozak, Rebecca R; Xu, Yihuan; Ancukiewicz, Marek; Jain, Rakesh K; Nugent, Francis W; Duda, Dan G; Stuart, Keith

2013-12-01

To assess the efficacy and safety of the anti-VEGF receptor-2 (VEGFR-2) antibody ramucirumab as first-line therapy in patients with advanced hepatocellular carcinoma and explore potential circulating biomarkers. Adults with advanced hepatocellular carcinoma and no prior systemic treatment received ramucirumab 8 mg/kg every two weeks until disease progression or limiting toxicity. The primary endpoint was progression-free survival (PFS); secondary endpoints included objective response rate (ORR) and overall survival (OS). Circulating biomarkers were evaluated before and after ramucirumab treatment in a subset of patients. Forty-two patients received ramucirumab. Median PFS was 4.0 months [95% confidence interval (CI), 2.6-5.7], ORR was 9.5% (95% CI, 2.7-22.6; 4/42 patients had a partial response), and median OS was 12.0 months (95% CI, 6.1-19.7). For patients with Barcelona Clinic Liver Cancer (BCLC) stage C disease, median OS was 4.4 months (95% CI, 0.5-9.0) for patients with Child-Pugh B cirrhosis versus 18.0 months (95% CI, 6.1-23.5) for patients with Child-Pugh A cirrhosis. Treatment-related grade ≥ 3 toxicities included hypertension (14%), gastrointestinal hemorrhage and infusion-related reactions (7% each), and fatigue (5%). There was one treatment-related death (gastrointestinal hemorrhage). After treatment with ramucirumab, there was an increase in serum VEGF and placental growth factor (PlGF) and a transient decrease in soluble VEGFR-2. Ramucirumab monotherapy may confer anticancer activity in advanced hepatocellular carcinoma with an acceptable safety profile. Exploratory biomarker studies showed changes in circulating VEGF, PlGF, and sVEGFR-2 that are consistent with those seen with other anti-VEGF agents. ©2013 AACR.

Circulating levels of IGF-1, IGFBP-3, and IGF-1/IGFBP-3 molar ratio and colorectal adenomas: A meta-analysis.

PubMed

Yoon, Yeong Sook; Keum, NaNa; Zhang, Xuehong; Cho, Eunyoung; Giovannucci, Edward L

2015-12-01

Insulin-like growth factor-1(IGF-1) promotes cell proliferation and inhibits apoptosis, and is thereby implicated in carcinogenesis. Insulin-like growth factor binding protein-3 (IGFBP-3) may antagonize IGF-1 action, leading to inhibition of the potential tumorigenicity of IGF-1. We conducted this meta-analysis to estimate the association between IGF-1, IGFBP-3 and IGF-1/IGFBP-3 ratio and the risk of colorectal adenomas (CRAs). Further, we investigated whether this association was different between occurrent and recurrent CRA, by adjustment for obesity, and by advanced CRA. Pubmed and Embase were searched up to April, 2015 to identify relevant observational studies and summary odds ratio (OR) and the corresponding 95% confidence interval (95% CI) was estimated using a random-effects model. A total of 12 studies (11 studies including 3038 cases for IGF-1, 12 studies including 3208 cases for IGFBP-3, and 7 studies including 1867 cases for IGF-1/IGFBP-3 ratio) were included in this meta-analysis. The summary ORs of occurrent CRA for the highest versus lowest category of IGF-1, IGFBP-3 and IGF-1/IGFBP-3 ratio were 1.13 (95% CI: 0.95-1.34), 0.99 (0.84-1.16), and 1.05 (0.86-1.29), respectively. Higher IGF-1 and IGF-1/IGFBP-3 ratio were significantly associated with decreased risk of recurrent CRA (OR for IGF-1=0.60 [95% CI: 0.42-0.85]; IGF-1/IGFBP-3 ratio=0.65 [0.44-0.96]). A stratified analysis by advancement of occurrent CRA produced a significant summary OR of IGF-1 for advanced CRA (OR=2.21 [1.08-4.52]) but not for non-advanced CRA (OR=0.89 [0.55-1.45]). We did not find significant publication bias or heterogeneity. Circulating levels of IGF-1, IGFBP-3 and their molar ratio were not associated with the risk of occurrence of CRA, but IGF-1 was associated with the increased risk for occurrence of advanced CRA. Copyright © 2015. Published by Elsevier Ltd.

Atlantic Ocean Circulation and Climate: The Current View From the Geological Record

NASA Astrophysics Data System (ADS)

Curry, W.

2006-12-01

Several recent advances in our understanding of past ocean circulation come from geological reconstructions using deep sea sediment proxies of water mass structure and flow. Put together, the observations suggest that the Atlantic Ocean during the last glacial period (21,000 years ago) was very different from today. Geochemical tracers document a shoaling of North Atlantic Deep Water and a much greater volume of deep waters with an Antarctic origin. Sedimentary pore water profiles have detected a reversal in the salinity gradient between northern and southern deep water sources. Uranium-series decay products in North Atlantic sediments indicate that the southward transport of North Atlantic Deep Water was as much as 30-40% reduced from today's transport. Ocean-margin density reconstructions are consistent with a one third reduction in transport through the Florida Straits. A reversed cross-basin density gradient in the South Atlantic calls for a different intermediate water circulation in the South Atlantic. The glacial Atlantic circulation appears to be best explained by a reduced influence of North Atlantic deep water sources and much greater influence of Antarctic deep water sources. More recent changes in Atlantic circulation have been much more modest. During the Little Ice Age (LIA - a much smaller cooling event about 200 to 600 years ago), transport of the Florida Current was reduced by about 10%, significant but a much smaller reduction than observed during the glacial period. There is little evidence for a change in the distribution or geochemistry of the water masses during the LIA. For both climate events (the glacial and the LIA) reduced Florida Current transport was accompanied by increased salinity of its surface waters, linking changes in ocean circulation to large scale changes in surface water hydrology. A feedback between the circulation of the Atlantic Ocean and the climate of the tropics has been proposed before and also seen in some coupled climate models: variations in the temperature gradients in the Atlantic basin affect the position of the Intertropical Convergence Zone and alter evaporation and precipitation patterns in the tropics. The salinity anomalies caused by these atmospheric shifts eventually are transported back to high latitudes by ocean circulation (Vellinga and Wu, 2004). Several recent geological reconstructions appear to observe such a coupling on centennial and millennial time scales.

Molecular Cardiac Surgery with Recirculating Delivery (MCARD): Procedure and Vector Transfer.

PubMed

Katz, Michael G; Fargnoli, Anthony S; Kendle, Andrew P; Bridges, Charles R

2017-01-01

Despite progress in clinical treatment, cardiovascular diseases are still the leading cause of morbidity and mortality worldwide. Therefore, novel therapeutic approaches are needed, targeting the underlying molecular mechanisms of disease with improved outcomes for patients. Gene therapy is one of the most promising fields for the development of new treatments for the advanced stages of cardiovascular diseases. The establishment of clinically relevant methods of gene transfer remains one of the principal limitations on the effectiveness of gene therapy. Recently, there have been significant advances in direct and transvascular gene delivery methods. The ideal gene transfer method should be explored in clinically relevant large animal models of heart disease to evaluate the roles of specific molecular pathways in disease pathogenesis. Characteristics of the optimal technique for gene delivery include low morbidity, an increased myocardial transcapillary gradient, esxtended vector residence time in the myocytes, and the exclusion of residual vector from the systemic circulation after delivery to minimize collateral expression and immune response. Here we describe myocardial gene transfer techniques with molecular cardiac surgery with recirculating delivery in a large animal model of post ischemic heart failure.

Patient's Guide to Arrhythmogenic Right Ventricular Dysplasia/Cardiomyopathy

MedlinePlus

Skip to main content American Heart Association Science Volunteer Warning Signs Search for this keyword Search Advanced Search Donate Home About this Journal Editorial Board General Statistics Circulation Doodle Doodle Gallery ...

Sensitivity of Age-of-Air Calculations to the Choice of Advection Scheme

NASA Technical Reports Server (NTRS)

Eluszkiewicz, Janusz; Hemler, Richard S.; Mahlman, Jerry D.; Bruhwiler, Lori; Takacs, Lawrence L.

2000-01-01

The age of air has recently emerged as a diagnostic of atmospheric transport unaffected by chemical parameterizations, and the features in the age distributions computed in models have been interpreted in terms of the models' large-scale circulation field. This study shows, however, that in addition to the simulated large-scale circulation, three-dimensional age calculations can also be affected by the choice of advection scheme employed in solving the tracer continuity equation, Specifically, using the 3.0deg latitude X 3.6deg longitude and 40 vertical level version of the Geophysical Fluid Dynamics Laboratory SKYHI GCM and six online transport schemes ranging from Eulerian through semi-Lagrangian to fully Lagrangian, it will be demonstrated that the oldest ages are obtained using the nondiffusive centered-difference schemes while the youngest ages are computed with a semi-Lagrangian transport (SLT) scheme. The centered- difference schemes are capable of producing ages older than 10 years in the mesosphere, thus eliminating the "young bias" found in previous age-of-air calculations. At this stage, only limited intuitive explanations can be advanced for this sensitivity of age-of-air calculations to the choice of advection scheme, In particular, age distributions computed online with the National Center for Atmospheric Research Community Climate Model (MACCM3) using different varieties of the SLT scheme are substantially older than the SKYHI SLT distribution. The different varieties, including a noninterpolating-in-the-vertical version (which is essentially centered-difference in the vertical), also produce a narrower range of age distributions than the suite of advection schemes employed in the SKYHI model. While additional MACCM3 experiments with a wider range of schemes would be necessary to provide more definitive insights, the older and less variable MACCM3 age distributions can plausibly be interpreted as being due to the semi-implicit semi-Lagrangian dynamics employed in the MACCM3. This type of dynamical core (employed with a 60-min time step) is likely to reduce SLT's interpolation errors that are compounded by the short-term variability characteristic of the explicit centered-difference dynamics employed in the SKYHI model (time step of 3 min). In the extreme case of a very slowly varying circulation, the choice of advection scheme has no effect on two-dimensional (latitude-height) age-of-air calculations, owing to the smooth nature of the transport circulation in 2D models. These results suggest that nondiffusive schemes may be the preferred choice for multiyear simulations of tracers not overly sensitive to the requirement of monotonicity (this category includes many greenhouse gases). At the same time, age-of-air calculations offer a simple quantitative diagnostic of a scheme's long-term diffusive properties and may help in the evaluation of dynamical cores in multiyear integrations. On the other hand, the sensitivity of the computed ages to the model numerics calls for caution in using age of air as a diagnostic of a GCM's large-scale circulation field.

Toward Realistic Simulation of low-Level Clouds Using a Multiscale Modeling Framework With a Third-Order Turbulence Closure in its Cloud-Resolving Model Component

NASA Technical Reports Server (NTRS)

Xu, Kuan-Man; Cheng, Anning

2010-01-01

This study presents preliminary results from a multiscale modeling framework (MMF) with an advanced third-order turbulence closure in its cloud-resolving model (CRM) component. In the original MMF, the Community Atmosphere Model (CAM3.5) is used as the host general circulation model (GCM), and the System for Atmospheric Modeling with a first-order turbulence closure is used as the CRM for representing cloud processes in each grid box of the GCM. The results of annual and seasonal means and diurnal variability are compared between the modified and original MMFs and the CAM3.5. The global distributions of low-level cloud amounts and precipitation and the amounts of low-level clouds in the subtropics and middle-level clouds in mid-latitude storm track regions in the modified MMF show substantial improvement relative to the original MMF when both are compared to observations. Some improvements can also be seen in the diurnal variability of precipitation.

Circulating Tumor Cell Increase as a Biomarker of Disease Progression in Metastatic Castration-Resistant Prostate Cancer Patients with Low Baseline CTC Counts.

PubMed

Lorente, D; Olmos, D; Mateo, J; Dolling, D; Bianchini, D; Seed, G; Flohr, P; Crespo, M; Figueiredo, I; Miranda, S; Scher, H I; Terstappen, L W M M; de Bono, J S

2018-05-07

The development of treatment response and surrogate biomarkers for advanced prostate cancer care is an unmet clinical need. Patients with baseline circulating tumor cell counts (BLCTCs)<5/7.5 mL represent a good prognosis subgroup, but are non-evaluable for response assessment (decrease in CTCs). The aim of the study is to determine the value of any increase in CTCs (CTC Progression) as an indicator of progression in prostate cancer patients with low pre-treatment CTCs (<5). We performed a post-hoc analysis of patients with BLCTCs < 5 treated in the COU-AA-301 (abiraterone or placebo + prednisone) and IMMC-38 (chemotherapy) trials. The association of CTC Progression (increase in CTCs at 4, 8 or 12 weeks) with overall survival (OS) was evaluated in multivariable Cox regression models. Performance of survival models with and without CTC Progression was evaluated by calculating ROC curve AUCs and weighted c-indices. Overall, 511 patients with CTCs <5 (421 in COU-AA-301; 90 in IMMC-38) were selected; 212 (41.7%) had CTC Progression at 4, 8 or 12 weeks after treatment initiation. CTC Progression was associated with significantly worse OS (27.1 vs 15.1m; HR: 3.4 [95%CI:2.5-4.5; p < 0.001]); independent of baseline CTCs and established clinical variables. Adding CTC Progression to the OS model significantly improved ROC AUC (0.77 vs 0.66; p < 0.001). Models including CTC Progression had superior ROC AUC (0.77 vs 0.69; p < 0.001) and weighted c-index (0.750 vs 0.705; delta c-index: 0.045 [95%CI: 0.019-0.071]) values than those including CTC conversion (increase to CTCs ≥5). In COU-AA-301, the impact of CTC Progression was independent of treatment arm. Increasing CTCs during the first 12-weeks of treatment are independently associated with worse OS from advanced prostate cancer in patients with baseline CTCs < 5 treated with abiraterone or chemotherapy and improve models with established prognostic variables. These findings must be prospectively validated.

Nonhydrostatic icosahedral atmospheric model (NICAM) for global cloud resolving simulations

NASA Astrophysics Data System (ADS)

Satoh, M.; Matsuno, T.; Tomita, H.; Miura, H.; Nasuno, T.; Iga, S.

2008-03-01

A new type of ultra-high resolution atmospheric global circulation model is developed. The new model is designed to perform "cloud resolving simulations" by directly calculating deep convection and meso-scale circulations, which play key roles not only in the tropical circulations but in the global circulations of the atmosphere. Since cores of deep convection have a few km in horizontal size, they have not directly been resolved by existing atmospheric general circulation models (AGCMs). In order to drastically enhance horizontal resolution, a new framework of a global atmospheric model is required; we adopted nonhydrostatic governing equations and icosahedral grids to the new model, and call it Nonhydrostatic ICosahedral Atmospheric Model (NICAM). In this article, we review governing equations and numerical techniques employed, and present the results from the unique 3.5-km mesh global experiments—with O(10 9) computational nodes—using realistic topography and land/ocean surface thermal forcing. The results show realistic behaviors of multi-scale convective systems in the tropics, which have not been captured by AGCMs. We also argue future perspective of the roles of the new model in the next generation atmospheric sciences.

Minimal modeling of the extratropical general circulation

NASA Technical Reports Server (NTRS)

O'Brien, Enda; Branscome, Lee E.

1989-01-01

The ability of low-order, two-layer models to reproduce basic features of the mid-latitude general circulation is investigated. Changes in model behavior with increased spectral resolution are examined in detail. Qualitatively correct time-mean heat and momentum balances are achieved in a beta-plane channel model which includes the first and third meridional modes. This minimal resolution also reproduces qualitatively realistic surface and upper-level winds and mean meridional circulations. Higher meridional resolution does not result in substantial changes in the latitudinal structure of the circulation. A qualitatively correct kinetic energy spectrum is produced when the resolution is high enough to include several linearly stable modes. A model with three zonal waves and the first three meridional modes has a reasonable energy spectrum and energy conversion cycle, while also satisfying heat and momentum budget requirements. This truncation reproduces the basic mechanisms and zonal circulation features that are obtained at higher resolution. The model performance improves gradually with higher resolution and is smoothly dependent on changes in external parameters.

Magnetic navigation behavior and the oceanic ecology of young loggerhead sea turtles.

PubMed

Putman, Nathan F; Verley, Philippe; Endres, Courtney S; Lohmann, Kenneth J

2015-04-01

During long-distance migrations, animals navigate using a variety of sensory cues, mechanisms and strategies. Although guidance mechanisms are usually studied under controlled laboratory conditions, such methods seldom allow for navigation behavior to be examined in an environmental context. Similarly, although realistic environmental models are often used to investigate the ecological implications of animal movement, explicit consideration of navigation mechanisms in such models is rare. Here, we used an interdisciplinary approach in which we first conducted lab-based experiments to determine how hatchling loggerhead sea turtles (Caretta caretta) respond to magnetic fields that exist at five widely separated locations along their migratory route, and then studied the consequences of the observed behavior by simulating it within an ocean circulation model. Magnetic fields associated with two geographic regions that pose risks to young turtles (due to cold wintertime temperatures or potential displacement from the migratory route) elicited oriented swimming, whereas fields from three locations where surface currents and temperature pose no such risk did not. Additionally, at locations with fields that elicited oriented swimming, simulations indicate that the observed behavior greatly increases the likelihood of turtles advancing along the migratory pathway. Our findings suggest that the magnetic navigation behavior of sea turtles is intimately tied to their oceanic ecology and is shaped by a complex interplay between ocean circulation and geomagnetic dynamics. © 2015. Published by The Company of Biologists Ltd.

Performance of the general circulation models in simulating temperature and precipitation over Iran

NASA Astrophysics Data System (ADS)

Abbasian, Mohammadsadegh; Moghim, Sanaz; Abrishamchi, Ahmad

2018-03-01

General Circulation Models (GCMs) are advanced tools for impact assessment and climate change studies. Previous studies show that the performance of the GCMs in simulating climate variables varies significantly over different regions. This study intends to evaluate the performance of the Coupled Model Intercomparison Project phase 5 (CMIP5) GCMs in simulating temperature and precipitation over Iran. Simulations from 37 GCMs and observations from the Climatic Research Unit (CRU) were obtained for the period of 1901-2005. Six measures of performance including mean bias, root mean square error (RMSE), Nash-Sutcliffe efficiency (NSE), linear correlation coefficient (r), Kolmogorov-Smirnov statistic (KS), Sen's slope estimator, and the Taylor diagram are used for the evaluation. GCMs are ranked based on each statistic at seasonal and annual time scales. Results show that most GCMs perform reasonably well in simulating the annual and seasonal temperature over Iran. The majority of the GCMs have a poor skill to simulate precipitation, particularly at seasonal scale. Based on the results, the best GCMs to represent temperature and precipitation simulations over Iran are the CMCC-CMS (Euro-Mediterranean Center on Climate Change) and the MRI-CGCM3 (Meteorological Research Institute), respectively. The results are valuable for climate and hydrometeorological studies and can help water resources planners and managers to choose the proper GCM based on their criteria.

Pharmacogenetics and pharmacogenomics as tools in cancer therapy.

PubMed

Rodríguez-Vicente, Ana E; Lumbreras, Eva; Hernández, Jesus M; Martín, Miguel; Calles, Antonio; Otín, Carlos López; Algarra, Salvador Martín; Páez, David; Taron, Miquel

2016-03-01

Pharmacogenetics and pharmacogenomics (PGx) are rapidly growing fields that aim to elucidate the genetic basis for the interindividual differences in drug response. PGx approaches have been applied to many anticancer drugs in an effort to identify relevant inherited or acquired genetic variations that may predict patient response to chemotherapy and targeted therapies. In this article, we discuss the advances in the field of cancer pharmacogenetics and pharmacogenomics, driven by the recent technological advances and new revolutionary massive sequencing technologies and their application to elucidate the genetic bases for interindividual drug response and the development of biomarkers able to personalize drug treatments. Specifically, we present recent progress in breast cancer molecular classifiers, cell-free circulating DNA as a prognostic and predictive biomarker in cancer, patient-derived tumor xenograft models, chronic lymphocytic leukemia genomic landscape, and current pharmacogenetic advances in colorectal cancer. This review is based on the lectures presented by the speakers of the symposium "Pharmacogenetics and Pharmacogenomics as Tools in Cancer Therapy" from the VII Conference of the Spanish Pharmacogenetics and Pharmacogenomics Society (SEFF), held in Madrid (Spain) on April 21, 2015.

Library Circulation Systems -- An Overview.

ERIC Educational Resources Information Center

Surace, Cecily J.

The model circulation system outlined is an on-line real time system in which the circulation file is created from the shelf list and the terminal inquiry system includes the capability to query and browse through the bibliographic system and the circulation subsystem together to determine the availability for circulation of specific documents, or…

Modeling bronchial circulation with application to soluble gas exchange: description and sensitivity analysis.

PubMed

Bui, T D; Dabdub, D; George, S C

1998-06-01

The steady-state exchange of inert gases across an in situ canine trachea has recently been shown to be limited equally by diffusion and perfusion over a wide range (0.01-350) of blood solubilities (betablood; ml . ml-1 . atm-1). Hence, we hypothesize that the exchange of ethanol (betablood = 1,756 at 37 degrees C) in the airways depends on the blood flow rate from the bronchial circulation. To test this hypothesis, the dynamics of the bronchial circulation were incorporated into an existing model that describes the simultaneous exchange of heat, water, and a soluble gas in the airways. A detailed sensitivity analysis of key model parameters was performed by using the method of Latin hypercube sampling. The model accurately predicted a previously reported experimental exhalation profile of ethanol (R2 = 0.991) as well as the end-exhalation airstream temperature (34.6 degrees C). The model predicts that 27, 29, and 44% of exhaled ethanol in a single exhalation are derived from the tissues of the mucosa and submucosa, the bronchial circulation, and the tissue exterior to the submucosa (which would include the pulmonary circulation), respectively. Although the concentration of ethanol in the bronchial capillary decreased during inspiration, the three key model outputs (end-exhaled ethanol concentration, the slope of phase III, and end-exhaled temperature) were all statistically insensitive (P > 0.05) to the parameters describing the bronchial circulation. In contrast, the model outputs were all sensitive (P < 0.05) to the thickness of tissue separating the core body conditions from the bronchial smooth muscle. We conclude that both the bronchial circulation and the pulmonary circulation impact soluble gas exchange when the entire conducting airway tree is considered.

Circulating Concentrations of Advanced Glycation end Products, its Association With the Development of Diabetes Mellitus.

PubMed

Jiménez, Itzel Uribe; Díaz-Díaz, Eulises; Castro, Jorge Salmerón; Ramos, Julia Pérez; León, Mario Cárdenas; Alvarado Ríos, José Antonio; Auriostigue Bautista, Juan Carlos; Correa-Rotter, Ricardo; Aguilar Salinas, Carlos Alberto; Larrea, Fernando

2017-05-01

Diabetes Mellitus (DM) is characterized by the production and accumulation of advanced glycation end products (AGEs), which are one of the key mechanisms in the development of its chronic complications. To assess the serum AGEs concentration by a radioimmunoassay (RIA) developed in our laboratory, to establish reference values in healthy population and to evaluate the diagnostic potential of measuring longitudinal changes in circulating AGEs concentrations to predict the development of DM. Clinical and metabolic parameters were obtained from a cohort of 781 Mexican people, initially and then seven years later. AGEs were quantified by a specific RIA. Associations of the changes in circulating levels of AGEs with the appearance of impaired fasting glucose (IFG), and the development of DM were evaluated. Diabetic subjects had higher circulating levels of AGEs than normoglycemic subjects or individuals with IFG in both samples studied (471 vs. 246 and 342 μU/mL, p <0.001; and 912 vs. 428 and 519 μU/mL, p <0.001; respectively). A multinomial logistic regression analysis showed that subjects who had AGEs concentration ≥400 μU/mL in the baseline sample had a relative risk ratio of 1.98 to develop IFG seven years later (p = 0.003). While the subjects who had AGEs concentration ≥450 μU/mL in the baseline sample had a relative risk ratio of 10.7 to develop DM seven years later (p <0.001). Circulating AGEs concentration is a good early marker to predict risk of developing DM. Copyright © 2017 IMSS. Published by Elsevier Inc. All rights reserved.

Circulating tumor cells: advances in isolation and analysis, and challenges for clinical applications

PubMed Central

Harouaka, Ramdane; Kang, Zhigang; Zheng, Siyang; Cao, Liang

2013-01-01

Circulating tumor cells (CTCs) are rare cancer cells released from tumors into the bloodstream that are thought to have a key role in cancer metastasis. The presence of CTCs has been associated with worse prognosis in several major cancer types, including breast, prostate and colorectal cancer. There is considerable interest in CTC research and technologies for their potential use as cancer biomarkers that may enhance cancer diagnosis and prognosis, facilitate drug development, and improve the treatment of cancer patients. This review provides an update on recent progress in CTC isolation and molecular characterization technologies. Furthermore, the review covers significant advances and limitations in the clinical applications of CTC-based assays for cancer prognosis, response to anti-cancer therapies, and exploratory studies in biomarkers predictive of sensitivity and resistance to cancer therapies. PMID:24134902

Circulating tumor cells: advances in isolation and analysis, and challenges for clinical applications.

PubMed

Harouaka, Ramdane; Kang, Zhigang; Zheng, Si-Yang; Cao, Liang

2014-02-01

Circulating tumor cells (CTCs) are rare cancer cells released from tumors into the bloodstream that are thought to have a key role in cancer metastasis. The presence of CTCs has been associated with worse prognosis in several major cancer types, including breast, prostate and colorectal cancer. There is considerable interest in CTC research and technologies for their potential use as cancer biomarkers that may enhance cancer diagnosis and prognosis, facilitate drug development, and improve the treatment of cancer patients. This review provides an update on recent progress in CTC isolation and molecular characterization technologies. Furthermore, the review covers significant advances and limitations in the clinical applications of CTC-based assays for cancer prognosis, response to anti-cancer therapies, and exploratory studies in biomarkers predictive of sensitivity and resistance to cancer therapies. Published by Elsevier Inc.

Liquid biopsy in liver cancer.

PubMed

Labgaa, Ismail; Villanueva, Augusto

2015-04-01

Liver cancer has become the second cause of cancer-related death worldwide. Most patients are still diagnosed at intermediate or advanced stage, where potentially curative treatment options are not recommended. Unlike other solid tumors, there are no validated oncogenic addiction loops and the only systemic agent to improve survival in advanced disease is sorafenib. All phase 3 clinical trials testing molecular therapies after sorafenib have been negative, none of which selected patients based on predictive biomarkers of response. Theoretically, analysis of circulating cancer byproducts (e.g., circulating tumor cells, cell-free nucleic acids), namely "liquid biopsy," could provide easy access to molecular tumor information, improve patients' stratification and allow to assess tumor dynamics over time. Recent technical developments and preliminary data from other malignancies indicate that liquid biopsy might have a role in the future management of cancer patients.

Understanding variability of the Southern Ocean overturning circulation in CORE-II models

NASA Astrophysics Data System (ADS)

Downes, S. M.; Spence, P.; Hogg, A. M.

2018-03-01

The current generation of climate models exhibit a large spread in the steady-state and projected Southern Ocean upper and lower overturning circulation, with mechanisms for deep ocean variability remaining less well understood. Here, common Southern Ocean metrics in twelve models from the Coordinated Ocean-ice Reference Experiment Phase II (CORE-II) are assessed over a 60 year period. Specifically, stratification, surface buoyancy fluxes, and eddies are linked to the magnitude of the strengthening trend in the upper overturning circulation, and a decreasing trend in the lower overturning circulation across the CORE-II models. The models evolve similarly in the upper 1 km and the deep ocean, with an almost equivalent poleward intensification trend in the Southern Hemisphere westerly winds. However, the models differ substantially in their eddy parameterisation and surface buoyancy fluxes. In general, models with a larger heat-driven water mass transformation where deep waters upwell at the surface ( ∼ 55°S) transport warmer waters into intermediate depths, thus weakening the stratification in the upper 2 km. Models with a weak eddy induced overturning and a warm bias in the intermediate waters are more likely to exhibit larger increases in the upper overturning circulation, and more significant weakening of the lower overturning circulation. We find the opposite holds for a cool model bias in intermediate depths, combined with a more complex 3D eddy parameterisation that acts to reduce isopycnal slope. In summary, the Southern Ocean overturning circulation decadal trends in the coarse resolution CORE-II models are governed by biases in surface buoyancy fluxes and the ocean density field, and the configuration of the eddy parameterisation.

Predicting Tropical Cyclogenesis with a Global Mesoscale Model: Preliminary Results with Very Severe Cyclonic Storm Nargis (2008)

NASA Astrophysics Data System (ADS)

Shen, B.; Tao, W.; Atlas, R.

2008-12-01

Very Severe Cyclonic Storm Nargis, the deadliest named tropical cyclone (TC) in the North Indian Ocean Basin, devastated Burma (Myanmar) in May 2008, causing tremendous damage and numerous fatalities. An increased lead time in the prediction of TC Nargis would have increased the warning time and may therefore have saved lives and reduced economic damage. Recent advances in high-resolution global models and supercomputers have shown the potential for improving TC track and intensity forecasts, presumably by improving multi-scale simulations. The key but challenging questions to be answered include: (1) if and how realistic, in terms of timing, location and TC general structure, the global mesoscale model (GMM) can simulate TC genesis and (2) under what conditions can the model extend the lead time of TC genesis forecasts. In this study, we focus on genesis prediction for TCs in the Indian Ocean with the GMM. Preliminary real-data simulations show that the initial formation and intensity variations of TC Nargis can be realistically predicted at a lead time of up to 5 days. These simulations also suggest that the accurate representations of a westerly wind burst (WWB) and an equatorial trough, associated with monsoon circulations and/or a Madden-Julian Oscillation (MJO), are important for predicting the formation of this kind of TC. In addition to the WWB and equatorial trough, other favorable environmental conditions will be examined, which include enhanced monsoonal circulation, upper-level outflow, low- and middle-level moistening, and surface fluxes.

Diagnostics of severe convection and subsynoptic scale ageostrophic circulations

NASA Technical Reports Server (NTRS)

1985-01-01

Diagnostics of severe convection and subsynoptic scale ageostrophic circulations are reported. Mesoscale circulations through forcing of ageostrophic motion by adiabatic, diabatic and frictional processes were studied. The development and application of a hybrid isentropic sigma coordinate numerical model was examined. The numerical model simulates mesoscale ageostrophic circulations associated with propagating jet streaks and severe convection. A complete list of publications and these completed through support of the NASA severe storms research project is included.

Enrichment and Detection of Circulating Tumor Cells and Other Rare Cell Populations by Microfluidic Filtration.

PubMed

Pugia, Michael; Magbanua, Mark Jesus M; Park, John W

2017-01-01

The current standard methods for isolating circulating tumor cells (CTCs) from blood involve EPCAM-based immunomagnetic approaches. A major disadvantage of these strategies is that CTCs with low EPCAM expression will be missed. Isolation by size using filter membranes circumvents the reliance on this cell surface marker, and can facilitate the capture not only of EPCAM-negative CTCs but other rare cells as well. These cells that are trapped on the filter membrane can be characterized by immunocytochemistry (ICC) , enumerated and profiled to elucidate their clinical significance. In this chapter, we discuss advances in filtration systems to capture rare cells as well as downstream ICC methods to detect and identify these cells. We highlight our recent clinical study demonstrating the feasibility of using a novel method consisting of automated microfluidic filtration and sequential ICC for detection and enumeration of CTCs, as well as circulating mesenchymal cells (CMCs), circulating endothelial cells (CECs), and putative circulating stem cells (CSCs). We hypothesize that simultaneous analysis of circulating rare cells in blood of cancer patients may lead to a better understanding of disease progression and development of resistance to therapy.

Gold Nanoparticle Based Platforms for Circulating Cancer Marker Detection

PubMed Central

Huang, Xiaohua; O'Connor, Ryan; Kwizera, Elyahb Allie

2017-01-01

Detection of cancer-related circulating biomarkers in body fluids has become a cutting-edge technology that has the potential to noninvasively screen cancer, diagnose cancer at early stage, monitor tumor progression, and evaluate therapy responses. Traditional molecular and cellular detection methods are either insensitive for early cancer intervention or technically costly and complicated making them impractical for typical clinical settings. Due to their exceptional structural and functional properties that are not available from bulk materials or discrete molecules, nanotechnology is opening new horizons for low cost, rapid, highly sensitive, and highly specific detection of circulating cancer markers. Gold nanoparticles have emerged as a unique nanoplatform for circulating biomarker detection owning to their advantages of easy synthesis, facile surface chemistry, excellent biocompatibility, and remarkable structure and environment sensitive optical properties. In this review, we introduce current gold nanoparticle-based technology platforms for the detection of four major classes of circulating cancer markers - circulating tumor cells, vesicles, nucleic acids, and proteins. The techniques will be summarized in terms of signal detection strategies. Distinctive examples are provided to highlight the state-of-the-art technologies that significantly advance basic and clinical cancer research. PMID:28217434

Evaluation and Sensitivity Analysis of an Ocean Model Response to Hurricane Ivan (PREPRINT)

DTIC Science & Technology

2009-05-18

analysis of upper-limb meridional overturning circulation interior ocean pathways in the tropical/subtropical Atlantic . In: Interhemispheric Water...diminishing returns are encountered when either resolution is increased. 3 1. Introduction Coupled ocean-atmosphere general circulation models have become...northwest Caribbean Sea 4 and GOM. Evaluation is difficult because ocean general circulation models incorporate a large suite of numerical algorithms

Can increased poleward oceanic heat flux explain the warm Cretaceous climate?

NASA Astrophysics Data System (ADS)

Schmidt, Gavin A.; Mysak, Lawrence A.

1996-10-01

The poleward transport of heat in the mid-Cretaceous (100 Ma) is examined using an idealized coupled ocean-atmosphere model. The oceanic component consists of two zonally averaged basins representing the proto-Pacific and proto-Indian oceans and models the dynamics of the meridional thermohaline circulation. The atmospheric component is a simple energy and moisture balance model which includes the diffusive meridional transport of sensible heat and moisture. The ocean model is spun up with a variety of plausible Cretaceous surface temperature and salinity profiles, and a consistent atmosphere is objectively derived based on the resultant sea surface temperature and the surface heat and freshwater fluxes. The coupled model does not exhibit climate drift. Multiple equilibria of the coupled model are found that break the initial symmetry of the ocean circulation; several of these equilibria have one-cell (northern or southern sinking) thermohaline circulation patterns. Two main classes of circulation are found: circulations where the densest water is relatively cool and is formed at the polar latitudes and circulations where the densest water is warm, but quite saline, and the strongest sinking occurs at the tropics. In all cases, significant amounts of warm, saline bottom water are formed in the proto-Indian basin which modify the deepwater characteristics in the larger (proto-Pacific) basin. Temperatures in the deep ocean are warm, 10°-17°C, in agreement with benthic foraminiferal oxygen isotope data. The poleward transport of heat in the modeled Cretaceous oceans is larger than in some comparable models of the present day thermohaline circulation and significantly larger than estimates of similar processes in the present-day ocean. It is consistently larger in the polar sinking cases when compared with that seen in the tropical sinking cases, but this represents an increase of only 10%. The largest increase over present-day model transports is in the atmospheric latent heat transport, where an increased hydrological cycle (especially in the tropical sinking cases) contributes up to an extra 1 PW of poleward heat transport. Better constraints on the oceanic deepwater circulation during this period are necessary before the meridional circulation can be unambiguously described.

Sensitivity of modeled estuarine circulation to spatial and temporal resolution of input meteorological forcing of a cold frontal passage

NASA Astrophysics Data System (ADS)

Weaver, Robert J.; Taeb, Peyman; Lazarus, Steven; Splitt, Michael; Holman, Bryan P.; Colvin, Jeffrey

2016-12-01

In this study, a four member ensemble of meteorological forcing is generated using the Weather Research and Forecasting (WRF) model in order to simulate a frontal passage event that impacted the Indian River Lagoon (IRL) during March 2015. The WRF model is run to provide high and low, spatial (0.005° and 0.1°) and temporal (30 min and 6 h) input wind and pressure fields. The four member ensemble is used to force the Advanced Circulation model (ADCIRC) coupled with Simulating Waves Nearshore (SWAN) and compute the hydrodynamic and wave response. Results indicate that increasing the spatial resolution of the meteorological forcing has a greater impact on the results than increasing the temporal resolution in coastal systems like the IRL where the length scales are smaller than the resolution of the operational meteorological model being used to generate the forecast. Changes in predicted water elevations are due in part to the upwind and downwind behavior of the input wind forcing. The significant wave height is more sensitive to the meteorological forcing, exhibited by greater ensemble spread throughout the simulation. It is important that the land mask, seen by the meteorological model, is representative of the geography of the coastal estuary as resolved by the hydrodynamic model. As long as the temporal resolution of the wind field captures the bulk characteristics of the frontal passage, computational resources should be focused so as to ensure that the meteorological model resolves the spatial complexities, such as the land-water interface, that drive the land use responsible for dynamic downscaling of the winds.

Numerical simulation of terrain-induced mesoscale circulation in the Chiang Mai area, Thailand

NASA Astrophysics Data System (ADS)

Sathitkunarat, Surachai; Wongwises, Prungchan; Pan-Aram, Rudklao; Zhang, Meigen

2008-11-01

The regional atmospheric modeling system (RAMS) was applied to Chiang Mai province, a mountainous area in Thailand, to study terrain-induced mesoscale circulations. Eight cases in wet and dry seasons under different weather conditions were analyzed to show thermal and dynamic impacts on local circulations. This is the first study of RAMS in Thailand especially investigating the effect of mountainous area on the simulated meteorological data. Analysis of model results indicates that the model can reproduce major features of local circulation and diurnal variations in temperatures. For evaluating the model performance, model results were compared with observed wind speed, wind direction, and temperature monitored at a meteorological tower. Comparison shows that the modeled values are generally in good agreement with observations and that the model captured many of the observed features.

An Overview of the Naval Research Laboratory Ocean Surface Flux (NFLUX) System

NASA Astrophysics Data System (ADS)

May, J. C.; Rowley, C. D.; Barron, C. N.

2016-02-01

The Naval Research Laboratory (NRL) ocean surface flux (NFLUX) system is an end-to-end data processing and assimilation system used to provide near-real time satellite-based surface heat flux fields over the global ocean. Swath-level air temperature (TA), specific humidity (QA), and wind speed (WS) estimates are produced using multiple polynomial regression algorithms with inputs from satellite sensor data records from the Special Sensor Microwave Imager/Sounder, the Advanced Microwave Sounding Unit-A, the Advanced Technology Microwave Sounder, and the Advanced Microwave Scanning Radiometer-2 sensors. Swath-level WS estimates are also retrieved from satellite environmental data records from WindSat, the MetOp scatterometers, and the Oceansat scatterometer. Swath-level solar and longwave radiative flux estimates are produced utilizing the Rapid Radiative Transfer Model for Global Circulation Models (RRTMG). Primary inputs to the RRTMG include temperature and moisture profiles and cloud liquid and ice water paths from the Microwave Integrated Retrieval System. All swath-level satellite estimates undergo an automated quality control process and are then assimilated with atmospheric model forecasts to produce 3-hourly gridded analysis fields. The turbulent heat flux fields, latent and sensible heat flux, are determined from the Coupled Ocean-Atmosphere Response Experiment (COARE) 3.0 bulk algorithms using inputs of TA, QA, WS, and a sea surface temperature model field. Quality-controlled in situ observations over a one-year time period from May 2013 through April 2014 form the reference for validating ocean surface state parameter and heat flux fields. The NFLUX fields are evaluated alongside the Navy's operational global atmospheric model, the Navy Global Environmental Model (NAVGEM). NFLUX is shown to have smaller biases and lower or similar root mean square errors compared to NAVGEM.

Correlations between the modelled potato crop yield and the general atmospheric circulation

NASA Astrophysics Data System (ADS)

Sepp, Mait; Saue, Triin

2012-07-01

Biology-related indicators do not usually depend on just one meteorological element but on a combination of several weather indicators. One way to establish such integral indicators is to classify the general atmospheric circulation into a small number of circulation types. The aim of present study is to analyse connections between general atmospheric circulation and potato crop yield in Estonia. Meteorologically possible yield (MPY), calculated by the model POMOD, is used to characterise potato crop yield. Data of three meteorological stations and the biological parameters of two potato sorts were applied to the model, and 73 different classifications of atmospheric circulation from catalogue 1.2 of COST 733, domain 05 are used to qualify circulation conditions. Correlation analysis showed that there is at least one circulation type in each of the classifications with at least one statistically significant (99%) correlation with potato crop yield, whether in Kuressaare, Tallinn or Tartu. However, no classifications with circulation types correlating with MPY in all three stations at the same time were revealed. Circulation types inducing a decrease in the potato crop yield are more clearly represented. Clear differences occurred between the observed geographical locations as well as between the seasons: derived from the number of significant circulation types, summer and Kuressaare stand out. Of potato varieties, late 'Anti' is more influenced by circulation. Analysis of MSLP maps of circulation types revealed that the seaside stations (Tallinn, Kuressaare) suffer from negative effects of anti-cyclonic conditions (drought), while Tartu suffers from the cyclonic activity (excessive water).

Computational studies of the effects of active and passive circulation enhancement concepts on wind turbine performance

NASA Astrophysics Data System (ADS)

Tongchitpakdee, Chanin

With the advantage of modern high speed computers, there has been an increased interest in the use of first-principles based computational approaches for the aerodynamic modeling of horizontal axis wind turbine (HAWT). Since these approaches are based on the laws of conservation (mass, momentum, and energy), they can capture much of the physics in great detail. The ability to accurately predict the airloads and power output can greatly aid the designers in tailoring the aerodynamic and aeroelastic features of the configuration. First-principles based analyses are also valuable for developing active means (e.g., circulation control), and passive means (e.g., Gurney flaps) of reducing unsteady blade loads, mitigating stall, and for efficient capture of wind energy leading to more electrical power generation. In this present study, the aerodynamic performance of a wind turbine rotor equipped with circulation enhancement technology (trailing edge blowing or Gurney flaps) is investigated using a three-dimensional unsteady viscous flow analysis. The National Renewable Energy Laboratory (NREL) Phase VI horizontal axis wind turbine is chosen as the baseline configuration. Prior to its use in exploring these concepts, the flow solver is validated with the experimental data for the baseline case under yawed flow conditions. Results presented include radial distribution of normal and tangential forces, shaft torque, root flap moment, surface pressure distributions at selected radial locations, and power output. Results show that good agreement has been for a range of wind speeds and yaw angles, where the flow is attached. At high wind speeds, however, where the flow is fully separated, it was found that the fundamental assumptions behind this present methodology breaks down for the baseline turbulence model (Spalart-Allmaras model), giving less accurate results. With the implementation of advanced turbulence model, Spalart-Allmaras Detached Eddy Simulation (SA-DES), the accuracy of the results at high wind speeds are improved. Results of circulation enhancement concepts show that, at low wind speed (attached flow) conditions, a Coanda jet at the trailing edge of the rotor blade is effective at increasing circulation resulting in an increase of lift and the chordwise thrust force. This leads to an increased amount of net power generation compared to the baseline configuration for moderate blowing coefficients. The effects of jet slot height and pulsed jet are also investigated in this study. A passive Gurney flap was found to increase the bound circulation and produce increased power in a manner similar to the Coanda jet. At high wind speed where the flow is separated, both the Coanda jet and Gurney flap become ineffective. Results of leading edge blowing indicate that a leading edge blowing jet is found to be beneficial in increasing power generation at high wind speeds. The effect of Gurney flap angle is also studied. Gurney flap angle has significant influence in power generation. Higher power output is obtained at higher flap angles.

On the Freshwater Sensitivity of the Arctic-Atlantic Thermohaline Circulation

NASA Astrophysics Data System (ADS)

Lambert, E.; Eldevik, T.; Haugan, P.

2016-02-01

The North Atlantic thermohaline circulation (THC) carries heat and salt toward the Arctic. This circulation is generally believed to be inhibited by northern freshwater input as indicated by the `box-model' of Stommel (1961). The inferred freshwater-sensitivity of the THC, however, varies considerably between studies, both quantitatively and qualitatively. The northernmost branch of the Atlantic THC, which forms a double estuarine circulation in the Arctic Mediterranean, is one example where both strengthening and weakening of the circulation may occur due to increased freshwater input. We have accordingly built on Stommel's original concept to accomodate a THC similar to that in the Arctic Mediterranean. This model consists of three idealized basins, or boxes, connected by two coupled branches of circulation - the double estuary. The net transport of these two branches represents the extension of the Gulf Stream toward the Arctic. Its sensitivity to a change in freshwater forcing depends largely on the distribution of freshwater over the two northern basins. Varying this distribution opens a spectrum of qualitative behaviours ranging from Stommel's original freshwater-inhibited overturning circulation to a freshwater-facilitated estuarine circulation. Between these limiting cases, a Hopf and a cusp bifurcation divide the spectrum into three qualitative regions. In the first region, the circulation behaves similarly to Stommel's circulation, and sufficient freshwater input can induce an abrupt transition into a reversed flow; in the second, a similar transition can be found, although it does not reverse the circulation; in the third, no transition can occur and the circulation is generally facilitated by the northern freshwater input. Overall, the northern THC appears more stable than what would be inferred based on Stommel's model; it requires a larger amount and more localized freshwater input to `collapse' it, and a double estuary circulation is less prone to flow reversal.

Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations.

PubMed

Safaei, Soroush; Blanco, Pablo J; Müller, Lucas O; Hellevik, Leif R; Hunter, Peter J

2018-01-01

We propose a detailed CellML model of the human cerebral circulation that runs faster than real time on a desktop computer and is designed for use in clinical settings when the speed of response is important. A lumped parameter mathematical model, which is based on a one-dimensional formulation of the flow of an incompressible fluid in distensible vessels, is constructed using a bond graph formulation to ensure mass conservation and energy conservation. The model includes arterial vessels with geometric and anatomical data based on the ADAN circulation model. The peripheral beds are represented by lumped parameter compartments. We compare the hemodynamics predicted by the bond graph formulation of the cerebral circulation with that given by a classical one-dimensional Navier-Stokes model working on top of the whole-body ADAN model. Outputs from the bond graph model, including the pressure and flow signatures and blood volumes, are compared with physiological data.

Mechanisms Controlling Global Mean Sea Surface Temperature Determined From a State Estimate

NASA Astrophysics Data System (ADS)

Ponte, R. M.; Piecuch, C. G.

2018-04-01

Global mean sea surface temperature (T¯) is a variable of primary interest in studies of climate variability and change. The temporal evolution of T¯ can be influenced by surface heat fluxes (F¯) and by diffusion (D¯) and advection (A¯) processes internal to the ocean, but quantifying the contribution of these different factors from data alone is prone to substantial uncertainties. Here we derive a closed T¯ budget for the period 1993-2015 based on a global ocean state estimate, which is an exact solution of a general circulation model constrained to most extant ocean observations through advanced optimization methods. The estimated average temperature of the top (10-m thick) level in the model, taken to represent T¯, shows relatively small variability at most time scales compared to F¯, D¯, or A¯, reflecting the tendency for largely balancing effects from all the latter terms. The seasonal cycle in T¯ is mostly determined by small imbalances between F¯ and D¯, with negligible contributions from A¯. While D¯ seems to simply damp F¯ at the annual period, a different dynamical role for D¯ at semiannual period is suggested by it being larger than F¯. At periods longer than annual, A¯ contributes importantly to T¯ variability, pointing to the direct influence of the variable ocean circulation on T¯ and mean surface climate.

Optimal satellite sampling to resolve global-scale dynamics in the I-T system

NASA Astrophysics Data System (ADS)

Rowland, D. E.; Zesta, E.; Connor, H. K.; Pfaff, R. F., Jr.

2016-12-01

The recent Decadal Survey highlighted the need for multipoint measurements of ion-neutral coupling processes to study the pathways by which solar wind energy drives dynamics in the I-T system. The emphasis in the Decadal Survey is on global-scale dynamics and processes, and in particular, mission concepts making use of multiple identical spacecraft in low earth orbit were considered for the GDC and DYNAMIC missions. This presentation will provide quantitative assessments of the optimal spacecraft sampling needed to significantly advance our knowledge of I-T dynamics on the global scale.We will examine storm time and quiet time conditions as simulated by global circulation models, and determine how well various candidate satellite constellations and satellite schemes can quantify the plasma and neutral convection patterns and global-scale distributions of plasma density, neutral density, and composition, and their response to changes in the IMF. While the global circulation models are data-starved, and do not contain all the physics that we might expect to observe with a global-scale constellation mission, they are nonetheless an excellent "starting point" for discussions of the implementation of such a mission. The result will be of great utility for the design of future missions, such as GDC, to study the global-scale dynamics of the I-T system.

Global perspectives on ensuring the safety of pharmaceutical products in the distribution process
.

PubMed

Jeong, Sohyun; Ji, Eunhee

2018-01-01

The distribution of counterfeit or falsified drugs is increasing worldwide. This can contribute to the high burden of disease and cost to society and is of global concern with the worldwide circulation of pharmaceuticals. The preparation and implementation of good distribution practice should be one of the most important aspects of ensuring safe drug circulation and administration. This research aimed to compare and analyze good distribution practice guidelines from advanced countries and international organizations, and to evaluate the status of the current good distribution practice guidelines in the world. Advanced pharmaceutical countries and international organizations, such as the World Health Organization, European Union, Pharmaceutical Inspection Co-operation Scheme, United States of America, Canada, and Australia, which have stable good distribution practice guidelines and public confidence, were included in the analysis. The World Health Organization and European Union guidelines are models for standardized good distribution practice for nations worldwide. The United States of America has a combination of four different series of distribution practices which have a unique structure and detailed content compared to those of other countries. The Canadian guidelines focus on temperature control during storage and transportation. The Australian guidelines apply to both classes of medicinal products and medical devices and need separate standardization. Transparent information about the Internet chain, international cooperation regarding counterfeiting, a high-standard qualification of sellers and customers, and technology to track and trace the whole life cycle of drugs should be the main focus of future good distribution practice guidelines worldwide.
.

Trends of atmospheric circulation during singular hot days in Europe

NASA Astrophysics Data System (ADS)

Jézéquel, Aglaé; Cattiaux, Julien; Naveau, Philippe; Radanovics, Sabine; Ribes, Aurélien; Vautard, Robert; Vrac, Mathieu; Yiou, Pascal

2018-05-01

The influence of climate change on mid-latitudes atmospheric circulation is still very uncertain. The large internal variability makes it difficult to extract any statistically significant signal regarding the evolution of the circulation. Here we propose a methodology to calculate dynamical trends tailored to the circulation of specific days by computing the evolution of the distances between the circulation of the day of interest and the other days of the time series. We compute these dynamical trends for two case studies of the hottest days recorded in two different European regions (corresponding to the heat-waves of summer 2003 and 2010). We use the NCEP reanalysis dataset, an ensemble of CMIP5 models, and a large ensemble of a single model (CESM), in order to account for different sources of uncertainty. While we find a positive trend for most models for 2003, we cannot conclude for 2010 since the models disagree on the trend estimates.

The multifaceted interplay between lipids and epigenetics.

PubMed

Dekkers, Koen F; Slagboom, P Eline; Jukema, J Wouter; Heijmans, Bastiaan T

2016-06-01

The interplay between lipids and epigenetic mechanisms has recently gained increased interest because of its relevance for common diseases and most notably atherosclerosis. This review discusses recent advances in unravelling this interplay with a particular focus on promising approaches and methods that will be able to establish causal relationships. Complementary approaches uncovered close links between circulating lipids and epigenetic mechanisms at multiple levels. A characterization of lipid-associated genetic variants suggests that these variants exert their influence on lipid levels through epigenetic changes in the liver. Moreover, exposure of monocytes to lipids persistently alters their epigenetic makeup resulting in more proinflammatory cells. Hence, epigenetic changes can both impact on and be induced by lipids. It is the combined application of technological advances to probe epigenetic modifications at a genome-wide scale and methodological advances aimed at causal inference (including Mendelian randomization and integrative genomics) that will elucidate the interplay between circulating lipids and epigenetics. Understanding its role in the development of atherosclerosis holds the promise of identifying a new category of therapeutic targets, since epigenetic changes are amenable to reversal.

Going with the flow: the role of ocean circulation in global marine ecosystems under a changing climate.

PubMed

van Gennip, Simon J; Popova, Ekaterina E; Yool, Andrew; Pecl, Gretta T; Hobday, Alistair J; Sorte, Cascade J B

2017-07-01

Ocean warming, acidification, deoxygenation and reduced productivity are widely considered to be the major stressors to ocean ecosystems induced by emissions of CO 2 . However, an overlooked stressor is the change in ocean circulation in response to climate change. Strong changes in the intensity and position of the western boundary currents have already been observed, and the consequences of such changes for ecosystems are beginning to emerge. In this study, we address climatically induced changes in ocean circulation on a global scale but relevant to propagule dispersal for species inhabiting global shelf ecosystems, using a high-resolution global ocean model run under the IPCC RCP 8.5 scenario. The ¼ degree model resolution allows improved regional realism of the ocean circulation beyond that of available CMIP5-class models. We use a Lagrangian approach forced by modelled ocean circulation to simulate the circulation pathways that disperse planktonic life stages. Based on trajectory backtracking, we identify present-day coastal retention, dominant flow and dispersal range for coastal regions at the global scale. Projecting into the future, we identify areas of the strongest projected circulation change and present regional examples with the most significant modifications in their dominant pathways. Climatically induced changes in ocean circulation should be considered as an additional stressor of marine ecosystems in a similar way to ocean warming or acidification. © 2017 John Wiley & Sons Ltd.

On Lagrangian residual currents with applications in south San Francisco Bay, California

USGS Publications Warehouse

Cheng, Ralph T.; Casulli, Vincenzo

1982-01-01

The Lagrangian residual circulation has often been introduced as the sum of the Eulerian residual circulation and the Stokes' drift. Unfortunately, this definition of the Lagrangian residual circulation is conceptually incorrect because both the Eulerian residual circulation and the Stokes' drift are Eulerian variables. In this paper a classification of various residual variables are reviewed and properly defined. The Lagrangian residual circulation is then studied by means of a two-stage formulation of a computer model. The tidal circulation is first computed in a conventional Eulerian way, and then the Lagrangian residual circulation is determined by a method patterned after the method of markers and cells. To demonstrate properties of the Lagrangian residual circulation, application of this approach in South San Francisco Bay, California, is considered. With the aid of the model results, properties of the Eulerian and Lagrangian residual circulation are examined. It can be concluded that estimation of the Lagrangian residual circulation from Eulerian data may lead to unacceptable error, particularly in a tidal estuary where the tidal excursion is of the same order of magnitude as the length scale of the basin. A direction calculation of the Lagrangian residual circulation must be made and has been shown to be feasible.

Climate Models

NASA Technical Reports Server (NTRS)

Druyan, Leonard M.

2012-01-01

Climate models is a very broad topic, so a single volume can only offer a small sampling of relevant research activities. This volume of 14 chapters includes descriptions of a variety of modeling studies for a variety of geographic regions by an international roster of authors. The climate research community generally uses the rubric climate models to refer to organized sets of computer instructions that produce simulations of climate evolution. The code is based on physical relationships that describe the shared variability of meteorological parameters such as temperature, humidity, precipitation rate, circulation, radiation fluxes, etc. Three-dimensional climate models are integrated over time in order to compute the temporal and spatial variations of these parameters. Model domains can be global or regional and the horizontal and vertical resolutions of the computational grid vary from model to model. Considering the entire climate system requires accounting for interactions between solar insolation, atmospheric, oceanic and continental processes, the latter including land hydrology and vegetation. Model simulations may concentrate on one or more of these components, but the most sophisticated models will estimate the mutual interactions of all of these environments. Advances in computer technology have prompted investments in more complex model configurations that consider more phenomena interactions than were possible with yesterday s computers. However, not every attempt to add to the computational layers is rewarded by better model performance. Extensive research is required to test and document any advantages gained by greater sophistication in model formulation. One purpose for publishing climate model research results is to present purported advances for evaluation by the scientific community.

Relations between winter precipitation and atmospheric circulation simulated by the Geophysical Fluid Dynamics Laboratory general circulation model

USGS Publications Warehouse

McCabe, G.J.; Dettinger, M.D.

1995-01-01

General circulation model (GCM) simulations of atmospheric circulation are more reliable than GCM simulations of temperature and precipitation. In this study, temporal correlations between 700 hPa height anomalies simulated winter precipitation at eight locations in the conterminous United States are compared with corresponding correlations in observations. The objectives are to 1) characterize the relations between atmospheric circulation and winter precipitation simulated by the GFDL, GCM for selected locations in the conterminous USA, ii) determine whether these relations are similar to those found in observations of the actual climate system, and iii) determine if GFDL-simulated precipitation is forced by the same circulation patterns as in the real atmosphere. -from Authors

Tidal flushing and wind driven circulation of Ahe atoll lagoon (Tuamotu Archipelago, French Polynesia) from in situ observations and numerical modelling.

PubMed

Dumas, F; Le Gendre, R; Thomas, Y; Andréfouët, S

2012-01-01

Hydrodynamic functioning and water circulation of the semi-closed deep lagoon of Ahe atoll (Tuamotu Archipelago, French Polynesia) were investigated using 1 year of field data and a 3D hydrodynamical model. Tidal amplitude averaged less than 30 cm, but tide generated very strong currents (2 ms(-1)) in the pass, creating a jet-like circulation that partitioned the lagoon into three residual circulation cells. The pass entirely flushed excess water brought by waves-induced radiation stress. Circulation patterns were computed for climatological meteorological conditions and summarized with stream function and flushing time. Lagoon hydrodynamics and general overturning circulation was driven by wind. Renewal time was 250 days, whereas the e-flushing time yielded a lagoon-wide 80-days average. Tide-driven flush through the pass and wind-driven overturning circulation designate Ahe as a wind-driven, tidally and weakly wave-flushed deep lagoon. The 3D model allows studying pearl oyster larvae dispersal in both realistic and climatological conditions for aquaculture applications. Copyright © 2012 Elsevier Ltd. All rights reserved.

Core-Crosslinked Polymeric Micelles: Principles, Preparation, Biomedical Applications and Clinical Translation

PubMed Central

Rijcken, Cristianne J.; Kiessling, Fabian; Hennink, Wim E.; Lammers, Twan

2015-01-01

Polymeric micelles (PM) are extensively used to improve the delivery of hydrophobic drugs. Many different PM have been designed and evaluated over the years, and some of them have steadily progressed through clinical trials. Increasing evidence suggests, however, that for prolonged circulation times and for efficient EPR-mediated drug targeting to tumors and to sites of inflammation, PM need to be stabilized, to prevent premature disintegration. Core-crosslinking is among the most popular methods to improve the in vivo stability of PM, and a number of core-crosslinked polymeric micelles (CCPM) have demonstrated promising efficacy in animal models. The latter is particularly true for CCPM in which (pro−) drugs are covalently entrapped. This ensures proper drug retention in the micelles during systemic circulation, efficient drug delivery to pathological sites via EPR, and tailorable drug release kinetics at the target site. We here summarize recent advances in the CCPM field, addressing the chemistry involved in preparing them, their in vitro and in vivo performance, potential biomedical applications, and guidelines for efficient clinical translation. PMID:25893004

Heating Structures Derived from Satellite

NASA Technical Reports Server (NTRS)

Tao, W.-K.; Adler, R.; Haddad, Z.; Hou, A.; Kakar, R.; Krishnamurti, T. N.; Kummerow, C.; Lang, S.; Meneghini, R.; Olson, W.

2004-01-01

Rainfall is a key link in the hydrologic cycle and is a primary heat source for the atmosphere. The vertical distribution of latent-heat release, which is accompanied by rainfall, modulates the large-scale circulations of the tropics and in turn can impact midlatitude weather. This latent heat release is a consequence of phase changes between vapor, liquid, and solid water. The Tropical Rainfall Measuring Mission (TRMM), a joint U.S./Japan space project, was launched in November 1997. It provides an accurate measurement of rainfall over the global tropics which can be used to estimate the four-dimensional structure of latent heating over the global tropics. The distributions of rainfall and inferred heating can be used to advance our understanding of the global energy and water cycle. This paper describes several different algorithms for estimating latent heating using TRMM observations. The strengths and weaknesses of each algorithm as well as the heating products are also discussed. The validation of heating products will be exhibited. Finally, the application of this heating information to global circulation and climate models is presented.

Patterns of Resuscitation Care and Survival After In-Hospital Cardiac Arrest in Patients With Advanced Cancer.

PubMed

Bruckel, Jeffrey T; Wong, Sandra L; Chan, Paul S; Bradley, Steven M; Nallamothu, Brahmajee K

2017-10-01

Little is known regarding patterns of resuscitation care in patients with advanced cancer who suffer in-hospital cardiac arrest (IHCA). In the Get With The Guidelines - Resuscitation registry, 47,157 adults with IHCA with and without advanced cancer (defined as the presence of metastatic or hematologic malignancy) were identified at 369 hospitals from April 2006 through June 2010. We compared rates of return of spontaneous circulation (ROSC) and survival to discharge between groups using multivariable models. We also compared duration of resuscitation effort and resuscitation quality measures. Overall, 6,585 patients with IHCA (14.0%) had advanced cancer. Patients with advanced cancer had lower multivariable-adjusted rates of ROSC (52.3% [95% CI, 49.5% to 55.3%] v 56.6% [95% CI, 53.8% to 59.5%]; P < .001) and survival to discharge (7.4% [95% CI, 6.6% to 8.4%] v 13.4% [95% CI, 12.1% to 14.8%]; P < .001). Among nonsurvivors who died during resuscitation, patients with advanced cancer had better performance on most resuscitation quality measures. Among patients with ROSC, patients with advanced cancer were made Do Not Attempt Resuscitation (DNAR) more frequently within 48 hours (adjusted relative risk, 1.30 [95% CI, 1.24 to 1.37]; P < .001). Adjustment for DNAR status explained some of the immediate effect of advanced cancer on survival; however, survival remained significantly lower in patients with cancer. Patients with advanced cancer can expect lower survival rates after IHCA compared with those without advanced cancer, and they are more frequently made DNAR within 48 hours of ROSC. These findings have important implications for discussions of resuscitation care wishes with patients and can better inform end-of-life discussions.

Idealised modelling of ocean circulation driven by conductive and hydrothermal fluxes at the seabed

NASA Astrophysics Data System (ADS)

Barnes, Jowan M.; Morales Maqueda, Miguel A.; Polton, Jeff A.; Megann, Alex P.

2018-02-01

Geothermal heating is increasingly recognised as an important factor affecting ocean circulation, with modelling studies suggesting that this heat source could lead to first-order changes in the formation rate of Antarctic Bottom Water, as well as a significant warming effect in the abyssal ocean. Where it has been represented in numerical models, however, the geothermal heat flux into the ocean is generally treated as an entirely conductive flux, despite an estimated one third of the global geothermal flux being introduced to the ocean via hydrothermal sources. A modelling study is presented which investigates the sensitivity of the geothermally forced circulation to the way heat is supplied to the abyssal ocean. An analytical two-dimensional model of the circulation is described, which demonstrates the effects of a volume flux through the ocean bed. A simulation using the NEMO numerical general circulation model in an idealised domain is then used to partition a heat flux between conductive and hydrothermal sources and explicitly test the sensitivity of the circulation to the formulation of the abyssal heat flux. Our simulations suggest that representing the hydrothermal flux as a mass exchange indeed changes the heat distribution in the abyssal ocean, increasing the advective heat transport from the abyss by up to 35% compared to conductive heat sources. Consequently, we suggest that the inclusion of hydrothermal fluxes can be an important addition to course-resolution ocean models.

Regional climates in the GISS general circulation model: Surface air temperature

NASA Technical Reports Server (NTRS)

Hewitson, Bruce

1994-01-01

One of the more viable research techniques into global climate change for the purpose of understanding the consequent environmental impacts is based on the use of general circulation models (GCMs). However, GCMs are currently unable to reliably predict the regional climate change resulting from global warming, and it is at the regional scale that predictions are required for understanding human and environmental responses. Regional climates in the extratropics are in large part governed by the synoptic-scale circulation and the feasibility of using this interscale relationship is explored to provide a way of moving to grid cell and sub-grid cell scales in the model. The relationships between the daily circulation systems and surface air temperature for points across the continental United States are first developed in a quantitative form using a multivariate index based on principal components analysis (PCA) of the surface circulation. These relationships are then validated by predicting daily temperature using observed circulation and comparing the predicted values with the observed temperatures. The relationships predict surface temperature accurately over the major portion of the country in winter, and for half the country in summer. These relationships are then applied to the surface synoptic circulation of the Goddard Institute for Space Studies (GISS) GCM control run, and a set of surface grid cell temperatures are generated. These temperatures, based on the larger-scale validated circulation, may now be used with greater confidence at the regional scale. The generated temperatures are compared to those of the model and show that the model has regional errors of up to 10 C in individual grid cells.

Angular circulation speed of tablets in a vibratory tablet coating pan.

PubMed

Kumar, Rahul; Wassgren, Carl

2013-03-01

In this work, a single tablet model and a discrete element method (DEM) computer simulation are developed to obtain the angular circulation speed of tablets in a vibratory tablet coating pan for range of vibration frequencies and amplitudes. The models identify three important dimensionless parameters that influence the speed of the tablets: the dimensionless amplitude ratio (a/R), the Froude number (aω2/g), and the tablet-wall friction coefficient, where a is the peak vibration amplitude at the drum center, ω is the vibration angular frequency, R is the drum radius, and g is the acceleration due to gravity. The models predict that the angular circulation speed of tablets increases with an increase in each of these parameters. The rate of increase in the angular circulation speed is observed to decrease for larger values of a/R. The angular circulation speed reaches an asymptote beyond a tablet-wall friction coefficient value of about 0.4. Furthermore, it is found that the Froude number should be greater than one for the tablets to start circulating. The angular circulation speed increases as Froude number increases but then does not change significantly at larger values of the Froude number. Period doubling, where the motion of the bed is repeated every two cycles, occurs at a Froude number larger than five. The single tablet model, although much simpler than the DEM model, is able to predict the maximum circulation speed (the limiting case for a large value of tablet-wall friction coefficient) as well as the transition to period doubling.

Coastal geomorphology through the looking glass

NASA Astrophysics Data System (ADS)

Sherman, Douglas J.; Bauer, Bernard O.

1993-07-01

Coastal geomorphology will gain future prominence as environmentally sound coastal zone management strategies, requiring scientific information, begin to supplant engineered shoreline stabilization schemes for amelioration of coastal hazards. We anticipate substantial change and progress over the next two decades, but we do not predict revolutionary advances in theoretical understanding of coastal geomorphic systems. Paradigm shifts will not occur; knowledge will advance incrementally. We offer predictions for specific coastal systems delineated according to scale. For the surf zone, we predict advances in wave shoaling theory, but not for wave breaking. We also predict greater understanding of turbulent processes, and substantive improvements in surf-zone circulation and radiation stress models. Very few of these improvements are expected to be incorporated in geomorphic models of coastal processes. We do not envision improvements in the theory of sediment transport, although some new and exciting empirical observations are probable. At the beach and nearshore scale, we predict the development of theoretically-based, two- and three-dimensional morphodynamical models that account for non-linear, time-dependent feedback processes using empirically calibrated modules. Most of the geomorphic research effort, however, will be concentrated at the scale of littoral cells. This scale is appropriate for coastal zone management because processes at this scale are manageable using traditional geomorphic techniques. At the largest scale, little advance will occur in our understanding of how coastlines evolve. Any empirical knowledge that is gained will accrue indirectly. Finally, we contend that anthropogenic influences, directly and indirectly, will be powerful forces in steering the future of Coastal Geomorphology. "If you should suddenly feel the need for a lesson in humility, try forecasting the future…" (Kleppner, 1991, p. 10).

Wind directions predicted from global circulation models and wind directions determined from eolian sandstones of the western United States-A comparison

USGS Publications Warehouse

Parrish, Judith T.; Peterson, F.

1988-01-01

Wind directions for Middle Pennsylvanian through Jurassic time are predicted from global circulation models for the western United States. These predictions are compared with paleowind directions interpreted from eolian sandstones of Middle Pennsylvanian through Jurassic age. Predicted regional wind directions correspond with at least three-quarters of the paleowind data from the sandstones; the rest of the data may indicate problems with correlation, local effects of paleogeography on winds, and lack of resolution of the circulation models. The data and predictions suggest the following paleoclimatic developments through the time interval studied: predominance of winter subtropical high-pressure circulation in the Late Pennsylvanian; predominance of summer subtropical high-pressure circulation in the Permian; predominance of summer monsoonal circulation in the Triassic and earliest Jurassic; and, during the remainder of the Jurassic, influence of both summer subtropical and summer monsoonal circulation, with the boundary between the two systems over the western United States. This sequence of climatic changes is largely owing to paleogeographic changes, which influenced the buildup and breakdown of the monsoonal circulation, and possibly owing partly to a decrease in the global temperature gradient, which might have lessened the influence of the subtropical high-pressure circulation. The atypical humidity of Triassic time probably resulted from the monsoonal circulation created by the geography of Pangaea. This circulation is predicted to have been at a maximum in the Triassic and was likely to have been powerful enough to draw moisture along the equator from the ocean to the west. ?? 1988.

Impacts of Aerosol-Monsoon Interaction on Rainfall and Circulation over Northern India and the Himalaya Foothills

NASA Technical Reports Server (NTRS)

Lau, William K. M.; Kim, Kyu-Myong; Shi, Jainn-Jong; Matsui, T.; Chin, M.; Tan, Qian; Peters-Lidard, C.; Tao, W. K.

2016-01-01

The boreal summer of 2008 was unusual for the Indian monsoon, featuring exceptional heavy loading of dust aerosols over the Arabian Sea and northern-central India, near normal all- India rainfall, but excessive heavy rain, causing disastrous flooding in the Northern Indian Himalaya Foothills (NIHF) regions, accompanied by persistent drought conditions in central and southern India. Using NASA Unified-physics Weather Research Forecast (NUWRF) model with fully interactive aerosol physics and dynamics, we carried out three sets of 7-day ensemble model forecast experiments: 1) control with no aerosol, 2) aerosol radiative effect only and 3) aerosol radiative and aerosol-cloud-microphysics effects, to study the impacts of aerosol monsoon interactions on monsoon variability over the NIHF during the summer of 2008. Results show that aerosol-radiation interaction (ARI), i.e., dust aerosol transport, and dynamical feedback processes induced by aerosol-radiative heating, plays a key role in altering the large scale monsoon circulation system, reflected by an increased north-south tropospheric temperature gradient, a northward shift of heavy monsoon rainfall, advancing the monsoon onset by 1-5 days over the HF, consistent with the EHP hypothesis (Lau et al. 2006). Additionally, we found that dust aerosols, via the semi-direct effect, increase atmospheric stability, and cause the dissipation of a developing monsoon onset cyclone over northeastern India northern Bay of Bengal. Eventually, in a matter of several days, ARI transforms the developing monsoon cyclone into mesoscale convective cells along the HF slopes. Aerosol-Cloud-microphysics Interaction (ACI) further enhances the ARI effect in invigorating the deep convection cells and speeding up the transformation processes. Results indicate that even in short-term (up to weekly) numerical forecasting of monsoon circulation and rainfall, effects of aerosol-monsoon interaction can be substantial and cannot be ignored.

Experimental investigation of a new method for advanced fast reactor shutdown cooling

NASA Astrophysics Data System (ADS)

Pakholkov, V. V.; Kandaurov, A. A.; Potseluev, A. I.; Rogozhkin, S. A.; Sergeev, D. A.; Troitskaya, Yu. I.; Shepelev, S. F.

2017-07-01

We consider a new method for fast reactor shutdown cooling using a decay heat removal system (DHRS) with a check valve. In this method, a coolant from the decay heat exchanger (DHX) immersed into the reactor upper plenum is supplied to the high-pressure plenum and, then, inside the fuel subassemblies (SAs). A check valve installed at the DHX outlet opens by the force of gravity after primary pumps (PP-1) are shut down. Experimental studies of the new and alternative methods of shutdown cooling were performed at the TISEY test facility at OKBM. The velocity fields in the upper plenum of the reactor model were obtained using the optical particle image velocimetry developed at the Institute of Applied Physics (Russian Academy of Sciences). The study considers the process of development of natural circulation in the reactor and the DHRS models and the corresponding evolution of the temperature and velocity fields. A considerable influence of the valve position in the displacer of the primary pump on the natural circulation of water in the reactor through the DHX was discovered (in some modes, circulation reversal through the DHX was obtained). Alternative DHRS designs without a shell at the DHX outlet with open and closed check valve are also studied. For an open check valve, in spite of the absence of a shell, part of the flow is supplied through the DHX pipeline and then inside the SA simulators. When simulating power modes of the reactor operation, temperature stratification of the liquid was observed, which increased in the cooling mode via the DHRS. These data qualitatively agree with the results of tests at BN-600 and BN-800 reactors.

Effects of urban land-use change in East China on the East Asian summer monsoon based on the CAM5.1 model

NASA Astrophysics Data System (ADS)

Ma, Hongyun; Jiang, Zhihong; Song, Jie; Dai, Aiguo; Yang, Xiuqun; Huo, Fei

2016-05-01

The effects of urban land-use change in East China on the East Asian summer monsoon (EASM) are investigated using a Community Atmosphere Model Version 5.1. The results show that the urban land-use change in East China causes spatially-varying changes in surface net radiation and heat fluxes, atmospheric circulation, and water budgets. It results in significant surface warming (cooling) and precipitation decrease (increase) in a large region north (south) of 30°N. Urban expansion agglomerated in (29°-41°N, 110°-122°E) alters the surface energy budget and warms the surface, resulting in strengthened southwesterly airflow south of 25°N and increased convergence below the mid-troposphere between 20° and 30°N. A concomitant northward downdraft associated with the increased convection generates an anomalous high pressure north of 30°N. Meanwhile, the downdraft not only produces adiabatic warming but also inhibits the dynamic condition for precipitation formation. The anomalous high pressure formed in North China prevents the southwesterly airflow from advancing northward, leading to increase the convergence and precipitation in South China. These changes reduce the meridional temperature gradient in the mid-lower troposphere and weaken the westerly airflow near 30°N. In addition, horizontal transport of vorticity north of 35°N weakens significantly, which leads to an anomalous barotropic structure of anticyclonic there. As a result, the anomalous anticyclonic circulation and descent north of 30°N are strengthened. At the same time, the anomalous cyclonic circulation and ascent south of 30°N are enhanced. These process induced by the thermal state changes due to urbanization weakens the EASM.

The Sensitivity of the Midlatitude Moist Isentropic Circulation on Both Sides of the Climate Model Hierarchy

NASA Astrophysics Data System (ADS)

Fajber, R. A.; Kushner, P. J.; Laliberte, F. B.

2017-12-01

In the midlatitude atmosphere, baroclinic eddies are able to raise warm, moist air from the surface into the midtroposphere where it condenses and warms the atmosphere through latent heating. This coupling between dynamics and moist thermodynamics motivates using a conserved moist thermodynamic variable, such as the equivalent potential temperature, to study the midlatitude circulation and associated heat transport since it implicitly accounts for latent heating. When the equivalent potential temperature is used to zonally average the circulation, the moist isentropic circulation takes the form of a single cell in each hemisphere. By utilising the statistical transformed Eulerian mean (STEM) circulation we are able to parametrize the moist isentropic circulation in terms of second order dynamic and moist thermodynamic statistics. The functional dependence of the STEM allows us to analytically calculate functional derivatives that reveal the spatially varying sensitivity of the moist isentropic circulation to perturbations in different statistics. Using the STEM functional derivatives as sensitivity kernels we interpret changes in the moist isentropic circulation from two experiments: surface heating in an idealised moist model, and a climate change scenario in a comprehensive atmospheric general circulation model. In both cases we find that the changes in the moist isentropic circulation are well predicted by the functional sensitivities, and that the total heat transport is more sensitive to changes in dynamical processes driving local changes in poleward heat transport than it is to thermodynamic and/or radiative processes driving changes to the distribution of equivalent potential temperature.

Explaining the mechanisms through which regional atmospheric circulation variability drives summer temperatures and glacial melt in western High Mountain Asia (HMA)

NASA Astrophysics Data System (ADS)

Forsythe, Nathan; Fowler, Hayley; Blenkinsop, Stephen; Li, Xiaofeng; Pritchard, David

2017-04-01

Comprehension of mechanisms by which atmospheric circulation influences sub-regional temperature and water resources variability in high-elevation mountainous catchments is of great scientific urgency due to the dependency of large downstream populations on the river flows these basins provide. In this work we quantify a regional atmospheric pattern, the Karakoram Zonal Shear (KZS), with a very pronounced annual cycle which we standardise into a dimensionless (seasonal) circulation metric the Karakoram Zonal Index (KZI). Going beyond previous regional circulation metrics such as the "middle-upper tropospheric temperature index" (MUTTI) or the Webster and Yang Monsoonal Index (WYMI) which have focused solely on the South Asian Summer Monsoon (June to September) season, the KZS/KZI provides an indicator which captures the influence and interactions of the westerly jet throughout the entire annual cycle. Use of the KZS and KZI have led us to identify a further regional atmospheric system, the Karakoram Vortex, which propagates "warm high" (anticyclonic postitive temperature anomaly) and "cold low" (cyclonic negative temperature anomaly) patterns across a very broad swath of Central and South Asia in winter but over a much more constrained area of western HMA in summer. The KV exerts this temperature influence through a combination of adiabatic effects and large-scale advection. Quantify KV influence, the KZI shows strong and statistically significantly near surface (2m) air temperatures both across western HMA both as observed through local meteorological stations and as estimated by an ensemble of global meteorological reanalyses. We show that this strong influence on temperature translates to important consequences for meltwater generation from highly glaciated Indus river tributaries which is logical given that previous studies have established the role of air temperature in modulating glacially-derived river flows in western HMA. By improving the understanding of large-scale circulation influences on sub-regional conditions in terms of their sign, strength and the mechanisms through which it acts, the KV/KZI work substantively advances climate science in this domain. The work also thus provides a new set of criteria for assessing the skill of global circulation models in representation of western HMA climate processes.

On the use of Schwarz-Christoffel conformal mappings to the grid generation for global ocean models

NASA Astrophysics Data System (ADS)

Xu, S.; Wang, B.; Liu, J.

2015-02-01

In this article we propose two conformal mapping based grid generation algorithms for global ocean general circulation models (OGCMs). Contrary to conventional, analytical forms based dipolar or tripolar grids, the new algorithms are based on Schwarz-Christoffel (SC) conformal mapping with prescribed boundary information. While dealing with the basic grid design problem of pole relocation, these new algorithms also address more advanced issues such as smoothed scaling factor, or the new requirements on OGCM grids arisen from the recent trend of high-resolution and multi-scale modeling. The proposed grid generation algorithm could potentially achieve the alignment of grid lines to coastlines, enhanced spatial resolution in coastal regions, and easier computational load balance. Since the generated grids are still orthogonal curvilinear, they can be readily utilized in existing Bryan-Cox-Semtner type ocean models. The proposed methodology can also be applied to the grid generation task for regional ocean modeling where complex land-ocean distribution is present.

Modelling dynamics of atmosphere ventilation and industrial city’s air pollution analysis: New approach

NASA Astrophysics Data System (ADS)

Glushkov, A. V.; Khetselius, O. Yu; Agayar, E. V.; Buyadzhi, V. V.; Romanova, A. V.; Mansarliysky, V. F.

2017-10-01

We present a new effective approach to analysis and modelling the natural air ventilation in an atmosphere of the industrial city, which is based on the Arakawa-Schubert and Glushkov models, modified to calculate the current involvement of the ensemble of clouds, and advanced mathematical methods of modelling an unsteady turbulence in the urban area. For the first time the methods of a plane complex field and spectral expansion algorithms are applied to calculate the air circulation for the cloud layer arrays, penetrating into the territory of the industrial city. We have also taken into account for the mechanisms of transformation of the cloud system advection over the territory of the urban area. The results of test computing the air ventilation characteristics are presented for the Odessa city. All above cited methods and models together with the standard monitoring and management systems can be considered as a basis for comprehensive “Green City” construction technology.

Optimal control of CPR procedure using hemodynamic circulation model

DOEpatents

Lenhart, Suzanne M.; Protopopescu, Vladimir A.; Jung, Eunok

2007-12-25

A method for determining a chest pressure profile for cardiopulmonary resuscitation (CPR) includes the steps of representing a hemodynamic circulation model based on a plurality of difference equations for a patient, applying an optimal control (OC) algorithm to the circulation model, and determining a chest pressure profile. The chest pressure profile defines a timing pattern of externally applied pressure to a chest of the patient to maximize blood flow through the patient. A CPR device includes a chest compressor, a controller communicably connected to the chest compressor, and a computer communicably connected to the controller. The computer determines the chest pressure profile by applying an OC algorithm to a hemodynamic circulation model based on the plurality of difference equations.

Circulating Tumor Cells: Moving Biological Insights into Detection

PubMed Central

Chen, Lichan; Bode, Ann M; Dong, Zigang

2017-01-01

Circulating tumor cells (CTCs) have shown promising potential as liquid biopsies that facilitate early detection, prognosis, therapeutic target selection and monitoring treatment response. CTCs in most cancer patients are low in abundance and heterogeneous in morphological and phenotypic profiles, which complicate their enrichment and subsequent characterization. Several methodologies for CTC enrichment and characterization have been developed over the past few years. However, integrating recent advances in CTC biology into these methodologies and the selection of appropriate enrichment and characterization methods for specific applications are needed to improve the reliability of CTC biopsies. In this review, we summarize recent advances in the studies of CTC biology, including the mechanisms of their generation and their potential forms of existence in blood, as well as the current CTC enrichment technologies. We then critically examine the selection of methods for appropriately enriching CTCs for further investigation of their clinical applications. PMID:28819450

Circulating tumor DNA as a liquid biopsy target for detection of pancreatic cancer

PubMed Central

Takai, Erina; Yachida, Shinichi

2016-01-01

Most pancreatic cancer patients present with advanced metastatic disease, resulting in extremely poor 5-year survival, mainly because of the lack of a reliable modality for early detection and limited therapeutic options for advanced disease. Therefore, there is a need for minimally-invasive diagnostic tools for detecting pancreatic cancer at an early stage, when curative surgery and also novel therapeutic approaches including precision medicine may be feasible. The “liquid biopsy” addresses these unmet clinical needs based on the concept that simple peripheral blood sampling and detection of circulating tumor DNA (ctDNA) could provide diagnostic information. In this review, we provide an overview of the current status of blood-based tests for diagnosis of pancreatic cancer and the potential utility of ctDNA for precision medicine. We also discuss challenges that remain to be addressed in developing practical ctDNA-based liquid biopsy approaches for early diagnosis of pancreatic cancer. PMID:27784960

Circulating tumor DNA as a liquid biopsy target for detection of pancreatic cancer.

PubMed

Takai, Erina; Yachida, Shinichi

2016-10-14

Most pancreatic cancer patients present with advanced metastatic disease, resulting in extremely poor 5-year survival, mainly because of the lack of a reliable modality for early detection and limited therapeutic options for advanced disease. Therefore, there is a need for minimally-invasive diagnostic tools for detecting pancreatic cancer at an early stage, when curative surgery and also novel therapeutic approaches including precision medicine may be feasible. The "liquid biopsy" addresses these unmet clinical needs based on the concept that simple peripheral blood sampling and detection of circulating tumor DNA (ctDNA) could provide diagnostic information. In this review, we provide an overview of the current status of blood-based tests for diagnosis of pancreatic cancer and the potential utility of ctDNA for precision medicine. We also discuss challenges that remain to be addressed in developing practical ctDNA-based liquid biopsy approaches for early diagnosis of pancreatic cancer.

Study of Circulation in the Tillamook Bay and the Surrounding Wetland Applying Triple-Nested Models Downscaling from Global Ocean to Estuary

EPA Science Inventory

To study the circulation and water quality in the Tillamook Bay, Oregon, a high-resolution estuarine model that covers the shallow bay and the surrounding wetland has been developed. The estuarine circulation at Tillamook Bay is mainly driven by the tides and the river flows and ...

The vertical distribution of nutrients and oxygen 18 in the upper Arctic Ocean

NASA Astrophysics Data System (ADS)

BjöRk, GöRan

1990-09-01

The observed vertical nutrient distribution including a maximum at about 100 m depth in the Arctic Ocean is investigated using a one-dimensional time-dependent circulation model together with a simple biological model. The circulation model includes a shelf-forced circulation. This is thought to take place in a box from which the outflow is specified regarding temperature and volume flux at different salinities. It has earlier been shown that the circulation model is able to reproduce the observed mean salinity and temperature stratification in the Arctic Ocean. Before introducing nutrients in the model a test is performed using the conservative tracer δ18 (18O/16O ratio) as one extra state variable in order to verify the circulation model. It is shown that the field measurements can be simulated. The result is, however, rather sensitive to the tracer concentration in the Bering Strait inflow. The nutrients nitrate, phosphate, and silicate are then treated by coupling a simple biological model to the circulation model. The biological model describes some overall effects of production, sinking, and decomposition of organic matter. First a standard case of the biological model is presented. This is followed by some modified cases. It is shown that the observed nutrient distribution including the maximum can be generated. The available nutrient data from the Arctic Ocean are not sufficient to decide which among the cases is the most likely to occur. One case is, however, chosen as the best case. A nutrient budget and estimates of the magnitudes of the new production are presented for this case.

Cardiovascular disease delay in centenarian offspring: role of heat shock proteins.

PubMed

Terry, Dellara F; McCormick, Maegan; Andersen, Stacy; Pennington, Jaemi; Schoenhofen, Emily; Palaima, Elizabeth; Bausero, Maria; Ogawa, Kishiko; Perls, Thomas T; Asea, Alexzander

2004-06-01

Cardiovascular disease is a major cause of morbidity and mortality of older Americans. We have demonstrated recently that centenarian offspring, when compared with age-matched controls, avoid and/or delay cardiovascular disease and cardiovascular risk factors. Given recent evidence suggesting that higher circulating levels of HSP70 predict the future development of cardiovascular disease in established hypertensives and a recent study demonstrating a decrease in HSP60 and HSP70 with advancing age, we hypothesized that HSP70 levels would be lower in centenarian offspring compared with controls. The circulating serum concentration of HSP70 in 20 centenarian offspring and 9 spousal controls was analyzed using a modified HSP70 ELISA method. Centenarian offspring showed approximately 10-fold lower levels of circulating serum HSP70 compared with spousal controls (P <.001). The exact biological significance of the extremely low levels of circulating serum HSP70 observed in centenarian offspring thus far is not clear. However, circulating HSP has been shown to correlate in diseases or disorders in which there is destruction or damage to target tissues or organs, including cardiovascular diseases and numerous autoimmune disorders. We hypothesize that low levels of circulating serum HSP70 may be an indicator of a healthy state and point to longevity of the host; therefore, our results suggest that levels of circulating serum HSP70 may be a marker for longevity.

Cardiovascular Disease Delay in Centenarian Offspring: Role of Heat Shock Proteins

PubMed Central

TERRY, DELLARA F.; McCORMICK, MAEGAN; ANDERSEN, STACY; PENNINGTON, JAEMI; SCHOENHOFEN, EMILY; PALAIMA, ELIZABETH; BAUSERO, MARIA; OGAWA, KISHIKO; PERLS, THOMAS T.; ASEA, ALEXZANDER

2006-01-01

Cardiovascular disease is a major cause of morbidity and mortality of older Americans. We have demonstrated recently that centenarian offspring, when compared with age-matched controls, avoid and/or delay cardiovascular disease and cardiovascular risk factors. Given recent evidence suggesting that higher circulating levels of HSP70 predict the future development of cardiovascular disease in established hypertensives and a recent study demonstrating a decrease in HSP60 and HSP70 with advancing age, we hypothesized that HSP70 levels would be lower in centenarian offspring compared with controls. The circulating serum concentration of HSP70 in 20 centenarian offspring and 9 spousal controls was analyzed using a modified HSP70 ELISA method. Centenarian offspring showed approximately 10-fold lower levels of circulating serum HSP70 compared with spousal controls (P < .001). The exact biological significance of the extremely low levels of circulating serum HSP70 observed in centenarian offspring thus far is not clear. However, circulating HSP has been shown to correlate in diseases or disorders in which there is destruction or damage to target tissues or organs, including cardiovascular diseases and numerous autoimmune disorders. We hypothesize that low levels of circulating serum HSP70 may be an indicator of a healthy state and point to longevity of the host; therefore, our results suggest that levels of circulating serum HSP70 may be a marker for longevity. PMID:15247074

Multifractal analysis of macro- and microcerebral circulation in rats

NASA Astrophysics Data System (ADS)

Pavlov, Alexey N.; Sindeeva, Olga S.; Sindeev, Sergey S.; Pavlova, Olga N.; Abdurashitov, Arkady S.; Rybalova, Elena V.; Semyachkina-Glushkovskaya, Oxana V.

2016-04-01

Application of noninvasive optical coherent-domain methods and advanced data processing tools such as the wavelet-based multifractal formalism allows revealing effective markers of early stages of functional distortions in the dynamics of cerebral vessels. Based on experiments performed in rats we discuss a possibility to diagnose a hidden stage of the development of intracranial hemorrhage (ICH). We also consider responses of the cerebrovascular dynamics to a pharmacologically induced increase in the peripheral blood pressure. We report distinctions occurring at the levels of macro- and microcerebral circulation.

Calibrating the ECCO ocean general circulation model using Green's functions

NASA Technical Reports Server (NTRS)

Menemenlis, D.; Fu, L. L.; Lee, T.; Fukumori, I.

2002-01-01

Green's functions provide a simple, yet effective, method to test and calibrate General-Circulation-Model(GCM) parameterizations, to study and quantify model and data errors, to correct model biases and trends, and to blend estimates from different solutions and data products.

High levels of circulating TNFR1 increase the risk of all-cause mortality and progression of renal disease in type 2 diabetic nephropathy.

PubMed

Fernández-Juárez, Gema; Villacorta Perez, Javier; Luño Fernández, José Luis; Martinez-Martinez, Ernesto; Cachofeiro, Victoria; Barrio Lucia, Vicente; Tato Ribera, Ana M; Mendez Abreu, Angel; Cordon, Alfredo; Oliva Dominguez, Jesus Angel; Praga Terente, Manuel

2017-05-01

Several studies have demonstrated that levels of circulating inflammatory markers such as tumour necrosis factorα (TNFα), are associated with early progression of diabetic nephropathy (DN). The aim of this study was to investigate whether there is an association between circulating TNFα receptor and disease progression in patients with advanced type 2 DN and severe proteinuria. Between 2006 and 2011, we measured levels of circulating soluble TNFα receptor 1 (TNFR1) and soluble TNFα receptor 2 (TNFR2) at baseline and 4 and 12 months in 101 patients included in a multicenter randomized controlled trial to compare the effect of optimal doses of renin-angiotensin system blockers in monotherapy or in combination (dual blockade) to slow progression of established type 2 DN. The primary composite endpoint was a >50% increase in baseline serum creatinine, end-stage renal disease, or death. The median follow-up was 32 months (IQR, 18-48), during which time 28 patients (22.7%) achieved the primary endpoint. The TNFR1 level, but not the TNFR2 level, was correlated with other inflammatory markers. Cox regression analysis showed that the highest TNFR1 levels (HR, 2.60; 95%CI, 1.11-86.34) and baseline proteinuria (HR 1.32; 95%CI 1.15-1.52) were associated with the primary endpoint. The mixed model analysis revealed that TNFR1 and the TNFR2 levels did not change after starting treatment with renin-angiotensin system blockers. Our results show that the highest levels of TNFR1 are independently associated with progression of renal disease and death in type 2 DN. The renin angiotensin blockers have no effect on these inflammatory markers. © 2016 Asian Pacific Society of Nephrology.

Impact of GODAE Products on Nested HYCOM Simulations of the West Florida Shelf

DTIC Science & Technology

2009-01-20

circulation and the Atlantic Meridional Overturning Circulation . For temperature, the non-assimilative outer model had a cold...associated with the basin-scale wind-driven gyres and with the Atlantic Meridional Overturning Circulation is incor- rectly represented. In contrast...not contain realistic LC transport variability associated with the wind-driven gyre circulation and the Atlantic Meridio- nal Overturning Circulation

A theoretical model of the variation of the meridional circulation with the solar cycle

NASA Astrophysics Data System (ADS)

Hazra, Gopal; Choudhuri, Arnab Rai

2017-12-01

Observations of the meridional circulation of the Sun, which plays a key role in the operation of the solar dynamo, indicate that its speed varies with the solar cycle, becoming faster during the solar minima and slower during the solar maxima. To explain this variation of the meridional circulation with the solar cycle, we construct a theoretical model by coupling the equation of the meridional circulation (the ϕ component of the vorticity equation within the solar convection zone) with the equations of the flux transport dynamo model. We consider the back reaction due to the Lorentz force of the dynamo-generated magnetic fields and study the perturbations produced in the meridional circulation due to it. This enables us to model the variations of the meridional circulation without developing a full theory of the meridional circulation itself. We obtain results which reproduce the observational data of solar cycle variations of the meridional circulation reasonably well. We get the best results on assuming the turbulent viscosity acting on the velocity field to be comparable to the magnetic diffusivity (i.e. on assuming the magnetic Prandtl number to be close to unity). We have to assume an appropriate bottom boundary condition to ensure that the Lorentz force cannot drive a flow in the subadiabatic layers below the bottom of the tachocline. Our results are sensitive to this bottom boundary condition. We also suggest a hypothesis on how the observed inward flow towards the active regions may be produced.

Panel 5: Microbiology and Immunology Panel

PubMed Central

Murphy, Timothy F.; Chonmaitree, Tasnee; Barenkamp, Stephen; Kyd, Jennelle; Nokso-Koivisto, Johanna; Patel, Janak A.; Heikkinen, Terho; Yamanaka, Noboru; Ogra, Pearay; Swords, W. Edward; Sih, Tania; Pettigrew, Melinda M.

2014-01-01

Objective The objective is to perform a comprehensive review of the literature from January 2007 through June 2011 on the virology, bacteriology, and immunology related to otitis media. Data Sources PubMed database of the National Library of Medicine. Review Methods Three subpanels with co-chairs comprising experts in the virology, bacteriology, and immunology of otitis media were formed. Each of the panels reviewed the literature in their respective fields and wrote draft reviews. The reviews were shared with all panel members, and a second draft was created. The entire panel met at the 10th International Symposium on Recent Advances in Otitis Media in June 2011 and discussed the review and refined the content further. A final draft was created, circulated, and approved by the panel. Conclusion Excellent progress has been made in the past 4 years in advancing an understanding of the microbiology and immunology of otitis media. Advances include laboratory-based basic studies, cell-based assays, work in animal models, and clinical studies. Implications for Practice The advances of the past 4 years formed the basis of a series of short-term and long-term research goals in an effort to guide the field. Accomplishing these goals will provide opportunities for the development of novel interventions, including new ways to better treat and prevent otitis media. PMID:23536533

The South Carolina Coastal Erosion Study: Integrated Circulation and Sediment Transport Studies. A Project Overview.

NASA Astrophysics Data System (ADS)

Voulgaris, G.; Warner, J. C.; Work, P. A.; Hanes, D. M.; Haas, K. A.

2004-12-01

The South Carolina Coastal Erosion Study (SCCES) is a cooperative research program funded by the U.S. Geological Survey Coastal and Marine Geology Program and managed by the South Carolina Sea Grant Consortium. The main objective of the study is to understand the factors and processes that control coastal sediment movement along the northern part of the South Carolina coast while at the same time advance our basic understanding of circulation, wave propagation and sediment transport processes. Earlier geological framework studies carried out by the same program provided detailed data on bathymetry, bottom sediment thickness and grain size distribution. They identified an extensive (10km long, 2km wide) sand body deposit located in the inner shelf that has potential use for beach nourishment. The main objectives are to: (1) identify the role of wind-driven circulation in controlling regional sediment distribution on the SC shelf; (2) examine the hypothesis that the shoal is of the "fair-weather type" with bedload being the dominant sediment transport mode and the tidally-averaged flow being at different directions at the two flanks of the shoal; (3) investigate the possibility that the sediment source for the shoal is derived from the nearshore as the result of the convergence of the longshore sediment transport; and finally, (4) quantify the control that the shoal exerts on the nearshore conditions through changes on the wave energy propagation characteristics. Field measurements and numerical modeling techniques are utilized in this project. Two deployments of oceanographic and sediment transport systems took place for a period of 6 months (October 2003 to April 2004) measuring wind forcing, vertical distribution of currents, stratification, and wave spectral characteristics. Further, bed-flow interactions were measured at two locations, with instrumented tripods equipped with pairs of ADVs for measuring turbulence, PC-ADPs for measuring vertical current profiles in the near bed and OBS and ABS for measuring suspended sediment concentrations. The numerical modeling effort utilizes ROMS for 3-D coastal circulation, SWAN for wave propagation on the inner shelf, and SHORECIRC for circulation in the nearshore. As part of the nearshore component of this project a focused short-term surf zone experiment was also carried out.

Methods of testing parameterizations: Vertical ocean mixing

NASA Technical Reports Server (NTRS)

Tziperman, Eli

1992-01-01

The ocean's velocity field is characterized by an exceptional variety of scales. While the small-scale oceanic turbulence responsible for the vertical mixing in the ocean is of scales a few centimeters and smaller, the oceanic general circulation is characterized by horizontal scales of thousands of kilometers. In oceanic general circulation models that are typically run today, the vertical structure of the ocean is represented by a few tens of discrete grid points. Such models cannot explicitly model the small-scale mixing processes, and must, therefore, find ways to parameterize them in terms of the larger-scale fields. Finding a parameterization that is both reliable and plausible to use in ocean models is not a simple task. Vertical mixing in the ocean is the combined result of many complex processes, and, in fact, mixing is one of the less known and less understood aspects of the oceanic circulation. In present models of the oceanic circulation, the many complex processes responsible for vertical mixing are often parameterized in an oversimplified manner. Yet, finding an adequate parameterization of vertical ocean mixing is crucial to the successful application of ocean models to climate studies. The results of general circulation models for quantities that are of particular interest to climate studies, such as the meridional heat flux carried by the ocean, are quite sensitive to the strength of the vertical mixing. We try to examine the difficulties in choosing an appropriate vertical mixing parameterization, and the methods that are available for validating different parameterizations by comparing model results to oceanographic data. First, some of the physical processes responsible for vertically mixing the ocean are briefly mentioned, and some possible approaches to the parameterization of these processes in oceanographic general circulation models are described in the following section. We then discuss the role of the vertical mixing in the physics of the large-scale ocean circulation, and examine methods of validating mixing parameterizations using large-scale ocean models.

Accelerated Edge-Preserving Image Restoration Without Boundary Artifacts

PubMed Central

Matakos, Antonios; Ramani, Sathish; Fessler, Jeffrey A.

2013-01-01

To reduce blur in noisy images, regularized image restoration methods have been proposed that use non-quadratic regularizers (like l1 regularization or total-variation) that suppress noise while preserving edges in the image. Most of these methods assume a circulant blur (periodic convolution with a blurring kernel) that can lead to wraparound artifacts along the boundaries of the image due to the implied periodicity of the circulant model. Using a non-circulant model could prevent these artifacts at the cost of increased computational complexity. In this work we propose to use a circulant blur model combined with a masking operator that prevents wraparound artifacts. The resulting model is non-circulant, so we propose an efficient algorithm using variable splitting and augmented Lagrangian (AL) strategies. Our variable splitting scheme, when combined with the AL framework and alternating minimization, leads to simple linear systems that can be solved non-iteratively using FFTs, eliminating the need for more expensive CG-type solvers. The proposed method can also efficiently tackle a variety of convex regularizers including edge-preserving (e.g., total-variation) and sparsity promoting (e.g., l1 norm) regularizers. Simulation results show fast convergence of the proposed method, along with improved image quality at the boundaries where the circulant model is inaccurate. PMID:23372080

The East Asian Atmospheric Water Cycle and Monsoon Circulation in the Met Office Unified Model

NASA Astrophysics Data System (ADS)

Rodríguez, José M.; Milton, Sean F.; Marzin, Charline

2017-10-01

In this study the low-level monsoon circulation and observed sources of moisture responsible for the maintenance and seasonal evolution of the East Asian monsoon are examined, studying the detailed water budget components. These observational estimates are contrasted with the Met Office Unified Model (MetUM) climate simulation performance in capturing the circulation and water cycle at a variety of model horizontal resolutions and in fully coupled ocean-atmosphere simulations. We study the role of large-scale circulation in determining the hydrological cycle by analyzing key systematic errors in the model simulations. MetUM climate simulations exhibit robust circulation errors, including a weakening of the summer west Pacific Subtropical High, which leads to an underestimation of the southwesterly monsoon flow over the region. Precipitation and implied diabatic heating biases in the South Asian monsoon and Maritime Continent region are shown, via nudging sensitivity experiments, to have an impact on the East Asian monsoon circulation. By inference, the improvement of these tropical biases with increased model horizontal resolution is hypothesized to be a factor in improvements seen over East Asia with increased resolution. Results from the annual cycle of the hydrological budget components in five domains show a good agreement between MetUM simulations and ERA-Interim reanalysis in northern and Tibetan domains. In simulations, the contribution from moisture convergence is larger than in reanalysis, and they display less precipitation recycling over land. The errors are closely linked to monsoon circulation biases.

Bond Graph Model of Cerebral Circulation: Toward Clinically Feasible Systemic Blood Flow Simulations

PubMed Central

Safaei, Soroush; Blanco, Pablo J.; Müller, Lucas O.; Hellevik, Leif R.; Hunter, Peter J.

2018-01-01

We propose a detailed CellML model of the human cerebral circulation that runs faster than real time on a desktop computer and is designed for use in clinical settings when the speed of response is important. A lumped parameter mathematical model, which is based on a one-dimensional formulation of the flow of an incompressible fluid in distensible vessels, is constructed using a bond graph formulation to ensure mass conservation and energy conservation. The model includes arterial vessels with geometric and anatomical data based on the ADAN circulation model. The peripheral beds are represented by lumped parameter compartments. We compare the hemodynamics predicted by the bond graph formulation of the cerebral circulation with that given by a classical one-dimensional Navier-Stokes model working on top of the whole-body ADAN model. Outputs from the bond graph model, including the pressure and flow signatures and blood volumes, are compared with physiological data. PMID:29551979

Climate model biases in jet streams, blocking and storm tracks resulting from missing orographic drag

NASA Astrophysics Data System (ADS)

Pithan, Felix; Shepherd, Theodore G.; Zappa, Giuseppe; Sandu, Irina

2016-07-01

State-of-the art climate models generally struggle to represent important features of the large-scale circulation. Common model deficiencies include an equatorward bias in the location of the midlatitude westerlies and an overly zonal orientation of the North Atlantic storm track. Orography is known to strongly affect the atmospheric circulation and is notoriously difficult to represent in coarse-resolution climate models. Yet how the representation of orography affects circulation biases in current climate models is not understood. Here we show that the effects of switching off the parameterization of drag from low-level orographic blocking in one climate model resemble the biases of the Coupled Model Intercomparison Project Phase 5 ensemble: An overly zonal wintertime North Atlantic storm track and less European blocking events, and an equatorward shift in the Southern Hemispheric jet and increase in the Southern Annular Mode time scale. This suggests that typical circulation biases in coarse-resolution climate models may be alleviated by improved parameterizations of low-level drag.

Global warming and tropical Pacific sea surface temperature: Why models and observations do not agree

NASA Astrophysics Data System (ADS)

Coats, Sloan; Karnauskas, Kristopher

2017-04-01

The pattern of sea surface temperature (SST) in the tropical Pacific Ocean provides an important control on global climate, necessitating an understanding of how this pattern will change in response to anthropogenic radiative forcing. State-of-the-art climate models from the Coupled Model Intercomparison Project phase 5 (CMIP5) overwhelmingly project a decrease in the tropical Pacific zonal SST gradient over the coming century. This decrease is, in part, a response of the ocean to a weakening Walker circulation in the CMIP5 models, a consequence of the mass and energy balances of the hydrologic cycle identified by Held and Soden (2006). CMIP5 models, however, are not able to reproduce the observed increase in the zonal SST gradient between 1900-2013 C.E., which we argue to be robust using advanced statistical techniques and new observational datasets. While this increase is suggestive of the ocean dynamical thermostat mechanism of Clement et al. (1996), we provide evidence that a strengthening Equatorial Undercurrent (EUC) also contributes to eastern equatorial Pacific cooling. Importantly, the strengthening EUC is a response of the ocean to a weakening Walker circulation and thus can help to reconcile the range of opposing theories and observations of anthropogenic climate change in the tropical Pacific Ocean. Because of a newly identified bias in their simulation of equatorial coupled atmosphere-ocean dynamics, however, CMIP5 models do not capture the magnitude of the response of the EUC to anthropogenic radiative forcing. Consequently, they project a continuation of the opposite to what has been observed in the real world, with potentially serious consequences for projected climate impacts that are influenced by the tropical Pacific Ocean.

Modeling of circulating fluised beds for post-combustion carbon capture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, A.; Shadle, L.; Miller, D.

2011-01-01

A compartment based model for a circulating fluidized bed reactor has been developed based on experimental observations of riser hydrodynamics. The model uses a cluster based approach to describe the two-phase behavior of circulating fluidized beds. Fundamental mass balance equations have been derived to describe the movement of both gas and solids though the system. Additional work is being performed to develop the correlations required to describe the hydrodynamics of the system. Initial testing of the model with experimental data shows promising results and highlights the importance of including end effects within the model.

Initial experience of a novel sheath guide for transbrachial coil embolization of cerebral aneurysms in the anterior cerebral circulation.

PubMed

Iwata, Tomonori; Mori, Takahisa; Tajiri, Hiroyuki; Miyazaki, Yuichi; Nakazaki, Masahito; Mizokami, Koji

2013-03-01

The transfemoral approach is a common technique for coil embolization of cerebral aneurysms in the anterior cerebral circulation. However, it is difficult to advance a guiding catheter into the carotid artery via the femoral route in patients with a tortuous aortic arch, an unfavorable supra-aortic takeoff, aortic diseases, or occlusion of the femoral artery. To report our initial experiences of coil embolization of cerebral aneurysms in the anterior cerebral circulation with a novel sheath guide for transbrachial carotid cannulation. A sheath guide designed specifically for transbrachial carotid cannulation was developed; transbrachial coil embolization for cerebral aneurysms began in May 2011. Included for analysis were patients who underwent transbrachial coil embolization for cerebral aneurysms in the anterior cerebral circulation from May 2011 to January 2012. Adjuvant techniques, angiographic results, procedural success, and periprocedural complications were investigated. Ten patients underwent transbrachial coil embolization of cerebral aneurysms in the anterior cerebral circulation. All procedures were successful using the brachial route. No periprocedural complications occurred. Patients were permitted to get seated immediately after coil embolization even during hemostasis. The sheath guide specifically designed for transbrachial carotid cannulation was useful for coil embolization of cerebral aneurysms in the anterior cerebral circulation.

Increase in cerebral oxygenation during advanced life support in out-of-hospital patients is associated with return of spontaneous circulation.

PubMed

Genbrugge, Cornelia; Meex, Ingrid; Boer, Willem; Jans, Frank; Heylen, René; Ferdinande, Bert; Dens, Jo; De Deyne, Cathy

2015-03-24

By maintaining sufficient cerebral blood flow and oxygenation, the goal of cardiopulmonary resuscitation (CPR) is to preserve the pre-arrest neurological state. To date, cerebral monitoring abilities during CPR have been limited. Therefore, we investigated the time-course of cerebral oxygen saturation values (rSO₂) during advanced life support in out-of-hospital cardiac arrest. Our primary aim was to compare rSO₂ values during advanced life support from patients with return of spontaneous circulation (ROSC) to patients who did not achieve ROSC. We performed an observational study to measure rSO₂ using Equanox (Nonin, Plymouth, MI) from the start of advanced life support in the pre-hospital setting. rSO₂ of 49 consecutive out-of-hospital cardiac arrest patients were analyzed. The total increase from initial rSO₂ value until two minutes before ROSC or end of advanced life support efforts was significantly larger in the group with ROSC 16% (9 to 36) compared to the patients without ROSC 10% (4 to 15) (P = 0.02). Mean rSO₂ from the start of measurement until two minutes before ROSC or until termination of advanced life support was higher in patients with ROSC than in those without, namely 39% ± 7 and 31% ± 4 (P = 0.05) respectively. During pre-hospital advanced life support, higher increases in rSO₂ are observed in patients attaining ROSC, even before ROSC was clinically determined. Our findings suggest that rSO₂ could be used in the future to guide patient tailored treatment during cardiac arrest and could therefore be a surrogate marker of the systemic oxygenation state of the patient.

Stochastic simulation of human pulmonary blood flow and transit time frequency distribution based on anatomic and elasticity data.

PubMed

Huang, Wei; Shi, Jun; Yen, R T

2012-12-01

The objective of our study was to develop a computing program for computing the transit time frequency distributions of red blood cell in human pulmonary circulation, based on our anatomic and elasticity data of blood vessels in human lung. A stochastic simulation model was introduced to simulate blood flow in human pulmonary circulation. In the stochastic simulation model, the connectivity data of pulmonary blood vessels in human lung was converted into a probability matrix. Based on this model, the transit time of red blood cell in human pulmonary circulation and the output blood pressure were studied. Additionally, the stochastic simulation model can be used to predict the changes of blood flow in human pulmonary circulation with the advantage of the lower computing cost and the higher flexibility. In conclusion, a stochastic simulation approach was introduced to simulate the blood flow in the hierarchical structure of a pulmonary circulation system, and to calculate the transit time distributions and the blood pressure outputs.

South Atlantic Ocean circulation: Simulation experiments with a quasi-geostrophic model and assimilation of TOPEX/POSEIDON and ERS 1 altimeter data

NASA Astrophysics Data System (ADS)

Florenchie, P.; Verron, J.

1998-10-01

Simulation experiments of South Atlantic Ocean circulations are conducted with a 1/6°, four-layered, quasi-geostrophic model. By means of a simple nudging data assimilation procedure along satellite tracks, TOPEX/POSEIDON and ERS 1 altimeter measurements are introduced into the model to control the simulation of the basin-scale circulation for the period from October 1992 to September 1994. The model circulation appears to be strongly influenced by the introduction of altimeter data, offering a consistent picture of South Atlantic Ocean circulations. Comparisons with observations show that the assimilating model successfully simulates the kinematic behavior of a large number of surface circulation components. The assimilation procedure enables us to produce schematic diagrams of South Atlantic circulation in which patterns ranging from basin-scale currents to mesoscale eddies are portrayed in a realistic way, with respect to their complexity. The major features of the South Atlantic circulation are described and analyzed, with special emphasis on the Brazil-Malvinas Confluence region, the Subtropical Gyre with the formation of frontal structures, and the Agulhas Retroflection. The Agulhas eddy-shedding process has been studied extensively. Fourteen eddies appear to be shed during the 2-year experiment. Because of their strong surface topographic signature, Agulhas eddies have been tracked continuously during the assimilation experiment as they cross the South Atlantic basin westward. Other effects of the assimilation procedure are shown, such as the intensification of the Subtropical Gyre, the appearance of a strong seasonal cycle in the Brazil Current transport, and the increase of the mean Brazil Current transport. This last result, combined with the westward oriention of the Agulhas eddies' trajectories, leads to a southward transport of mean eddy kinetic energy across 30°S.

Toll-Like Receptor Signaling in Burn Wound Healing and Scarring

PubMed Central

D'Arpa, Peter; Leung, Kai P.

2017-01-01

Significance: Damage-associated molecular patterns (DAMPs) and pathogen-associated molecular patterns (PAMPs) emanate from burn-injured tissue and enter systemic circulation. Locally and systemically, they activate pattern-recognition receptors, including toll-like receptors (TLRs), to stimulate cytokine secretion, which in the severest burns typically results in extreme systemic cytokine levels, a dysfunctioning immune system, infection, impaired healing, and excessive scarring. This system-wide disruption of homeostasis can advance to life-threatening, multiorgan dysfunction syndrome. Knowledge of DAMP- and PAMP-TLR signaling may lead to treatments that ameliorate local and systemic inflammation and reduce scarring and other burn injury sequela. Recent Advances: Many PAMPs and DAMPs, the TLRs they activate, and their downstream signaling molecules have been shown to contribute to local and systemic inflammation and tissue damage following burn injury. Critical Issues: Whether TLR-pathway-targeting treatments applied at different times postburn injury might improve scarring remains an open question. The evaluation of this question requires the use of appropriate preclinical and clinical burn models carried out until after mature scar has formed. Future Directions: After TLR-pathway-targeting treatments are evaluated in porcine burn wound models and their safety is demonstrated, they can be tested in proof-of-concept clinical burn wound models. PMID:29062590

Early snowmelt significantly enhances boreal springtime carbon uptake

PubMed Central

Pulliainen, Jouni; Aurela, Mika; Laurila, Tuomas; Aalto, Tuula; Takala, Matias; Salminen, Miia; Kulmala, Markku; Barr, Alan; Heimann, Martin; Lindroth, Anders; Laaksonen, Ari; Derksen, Chris; Mäkelä, Annikki; Markkanen, Tiina; Lemmetyinen, Juha; Susiluoto, Jouni; Dengel, Sigrid; Mammarella, Ivan; Tuovinen, Juha-Pekka; Vesala, Timo

2017-01-01

We determine the annual timing of spring recovery from space-borne microwave radiometer observations across northern hemisphere boreal evergreen forests for 1979–2014. We find a trend of advanced spring recovery of carbon uptake for this period, with a total average shift of 8.1 d (2.3 d/decade). We use this trend to estimate the corresponding changes in gross primary production (GPP) by applying in situ carbon flux observations. Micrometeorological CO2 measurements at four sites in northern Europe and North America indicate that such an advance in spring recovery would have increased the January–June GPP sum by 29 g⋅C⋅m−2 [8.4 g⋅C⋅m−2 (3.7%)/decade]. We find this sensitivity of the measured springtime GPP to the spring recovery to be in accordance with the corresponding sensitivity derived from simulations with a land ecosystem model coupled to a global circulation model. The model-predicted increase in springtime cumulative GPP was 0.035 Pg/decade [15.5 g⋅C⋅m−2 (6.8%)/decade] for Eurasian forests and 0.017 Pg/decade for forests in North America [9.8 g⋅C⋅m−2 (4.4%)/decade]. This change in the springtime sum of GPP related to the timing of spring snowmelt is quantified here for boreal evergreen forests. PMID:28973918

Predicting Tropical Cyclogenesis with a Global Mesoscale Model: Hierarchical Multiscale Interactions During the Formation of Tropical Cyclone Nargis(2008)

NASA Technical Reports Server (NTRS)

Shen, B.-W.; Tao, W.-K.; Lau, W. K.; Atlas, R.

2010-01-01

Very severe cyclonic storm Nargis devastated Burma (Myanmar) in May 2008, caused tremendous damage and numerous fatalities, and became one of the 10 deadliest tropical cyclones (TCs) of all time. To increase the warning time in order to save lives and reduce economic damage, it is important to extend the lead time in the prediction of TCs like Nargis. As recent advances in high-resolution global models and supercomputing technology have shown the potential for improving TC track and intensity forecasts, the ability of a global mesoscale model to predict TC genesis in the Indian Ocean is examined in this study with the aim of improving simulations of TC climate. High-resolution global simulations with real data show that the initial formation and intensity variations of TC Nargis can be realistically predicted up to 5 days in advance. Preliminary analysis suggests that improved representations of the following environmental conditions and their hierarchical multiscale interactions were the key to achieving this lead time: (1) a westerly wind burst and equatorial trough, (2) an enhanced monsoon circulation with a zero wind shear line, (3) good upper-level outflow with anti-cyclonic wind shear between 200 and 850 hPa, and (4) low-level moisture convergence.

Evaluation of NASA GEOS-ADAS Modeled Diurnal Warming Through Comparisons to SEVIRI and AMSR2 SST Observations

NASA Astrophysics Data System (ADS)

Gentemann, C. L.; Akella, S.

2018-02-01

An analysis of the ocean skin Sea Surface Temperature (SST) has been included in the Goddard Earth Observing System (GEOS) - Atmospheric Data Assimilation System (ADAS), Version 5 (GEOS-ADAS). This analysis is based on the GEOS atmospheric general circulation model (AGCM) that simulates near-surface diurnal warming and cool skin effects. Analysis for the skin SST is performed along with the atmospheric state, including Advanced Very High Resolution Radiometer (AVHRR) satellite radiance observations as part of the data assimilation system. One month (September, 2015) of GEOS-ADAS SSTs were compared to collocated satellite Spinning Enhanced Visible and InfraRed Imager (SEVIRI) and Advanced Microwave Scanning Radiometer 2 (AMSR2) SSTs to examine how the GEOS-ADAS diurnal warming compares to the satellite measured warming. The spatial distribution of warming compares well to the satellite observed distributions. Specific diurnal events are analyzed to examine variability within a single day. The dependence of diurnal warming on wind speed, time of day, and daily average insolation is also examined. Overall the magnitude of GEOS-ADAS warming is similar to the warming inferred from satellite retrievals, but several weaknesses in the GEOS-AGCM simulated diurnal warming are identified and directly related back to specific features in the formulation of the diurnal warming model.

Minimized extracorporeal circulation is improving outcome of coronary artery bypass surgery in the elderly.

PubMed

Freundt, Miriam; Ried, Michael; Philipp, Alois; Diez, Claudius; Kolat, Philipp; Hirt, Stephan W; Schmid, Christof; Haneya, Assad

2016-03-01

Advanced age is a known risk factor for morbidity and mortality after coronary artery bypass grafting (CABG). Minimized extracorporeal circulation (MECC) has been shown to reduce the negative effects associated with conventional extracorporeal circulation (CECC). This trial assesses the impact of MECC on the outcome of elderly patients undergoing CABG. Eight hundred and seventy-five patients (mean age 78.35 years) underwent isolated CABG using CECC (n=345) or MECC (n=530). The MECC group had a significantly shorter extracorporeal circulation time (ECCT), cross-clamp time and reperfusion time and lower transfusion needs. Postoperatively, these patients required significantly less inotropic support, fewer blood transfusions, less postoperative hemodialysis and developed less delirium compared to CECC patients. In the MECC group, intensive care unit (ICU) stay was significantly shorter and 30-day mortality was significantly reduced [2.6% versus 7.8%; p<0.001]. In conclusion, MECC improves outcome in elderly patients undergoing CABG surgery. © The Author(s) 2015.

The role of ctDNA detection and the potential of the liquid biopsy for breast cancer monitoring.

PubMed

Openshaw, Mark Robert; Page, Karen; Fernandez-Garcia, Daniel; Guttery, David; Shaw, Jacqueline Amanda

2016-07-01

Recent advances in deep amplicon sequencing have enabled rapid assessment of somatic mutations and structural changes in multiple cancer genes in DNA isolated from tumour tissues and circulating cell-free DNA (cfDNA). This cfDNA is under investigation as a 'liquid biopsy' for the real time monitoring of patients with cancer in a growing number of research studies and clinical trials. Here we will provide a brief overview of the potential clinical utility of cfDNA profiling for detection and monitoring of patients with breast cancer. The review was conducted in English using PubMed and search terms including 'breast cancer', 'plasma DNA', 'circulating cell free DNA' and 'circulating tumour DNA'. Expert commentary: Liquid biopsies through circulating tumor DNA (ctDNA) enable monitoring of patients with breast cancer. The challenge ahead will be to incorporate cfDNA mutation profiling into routine clinical practice to provide patients with the most appropriate and timely treatment.

Numerical simulation of a full-loop circulating fluidized bed under different operating conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Yupeng; Musser, Jordan M.; Li, Tingwen

Both experimental and computational studies of the fluidization of high-density polyethylene (HDPE) particles in a small-scale full-loop circulating fluidized bed are conducted. Experimental measurements of pressure drop are taken at different locations along the bed. The solids circulation rate is measured with an advanced Particle Image Velocimetry (PIV) technique. The bed height of the quasi-static region in the standpipe is also measured. Comparative numerical simulations are performed with a Computational Fluid Dynamics solver utilizing a Discrete Element Method (CFD-DEM). This paper reports a detailed and direct comparison between CFD-DEM results and experimental data for realistic gas-solid fluidization in a full-loopmore » circulating fluidized bed system. The comparison reveals good agreement with respect to system component pressure drop and inventory height in the standpipe. In addition, the effect of different drag laws applied within the CFD simulation is examined and compared with experimental results.« less

Development of a hydraulic model of the human systemic circulation

NASA Technical Reports Server (NTRS)

Sharp, M. K.; Dharmalingham, R. K.

1999-01-01

Physical and numeric models of the human circulation are constructed for a number of objectives, including studies and training in physiologic control, interpretation of clinical observations, and testing of prosthetic cardiovascular devices. For many of these purposes it is important to quantitatively validate the dynamic response of the models in terms of the input impedance (Z = oscillatory pressure/oscillatory flow). To address this need, the authors developed an improved physical model. Using a computer study, the authors first identified the configuration of lumped parameter elements in a model of the systemic circulation; the result was a good match with human aortic input impedance with a minimum number of elements. Design, construction, and testing of a hydraulic model analogous to the computer model followed. Numeric results showed that a three element model with two resistors and one compliance produced reasonable matching without undue complication. The subsequent analogous hydraulic model included adjustable resistors incorporating a sliding plate to vary the flow area through a porous material and an adjustable compliance consisting of a variable-volume air chamber. The response of the hydraulic model compared favorably with other circulation models.

The dynamics of the Snowball Earth Hadley circulation for off-equatorial and seasonally varying insolation

NASA Astrophysics Data System (ADS)

Voigt, A.

2013-11-01

I study the Hadley circulation of a completely ice-covered Snowball Earth through simulations with a comprehensive atmosphere general circulation model. Because the Snowball Earth atmosphere is an example of a dry atmosphere, these simulations allow me to test to what extent dry theories and idealized models capture the dynamics of realistic dry Hadley circulations. Perpetual off-equatorial as well as seasonally varying insolation is used, extending a previous study for perpetual on-equatorial (equinox) insolation. Vertical diffusion of momentum, representing the momentum transport of dry convection, is fundamental to the momentum budgets of both the winter and summer cells. In the zonal budget, it is the primary process balancing the Coriolis force. In the meridional budget, it mixes meridional momentum between the upper and the lower branch and thereby decelerates the circulation. Because of the latter, the circulation intensifies by a factor of three when vertical diffusion of momentum is suppressed. For seasonally varying insolation, the circulation undergoes rapid transitions from the weak summer into the strong winter regime. Consistent with previous studies in idealized models, these transitions result from a mean-flow feedback, because of which they are insensitive to the treatment of vertical diffusion of momentum. Overall, the results corroborate previous findings for perpetual on-equatorial insolation. They demonstrate that descriptions of realistic dry Hadley circulations, in particular their strength, need to incorporate the vertical momentum transport by dry convection, a process that is neglected in most dry theories and idealized models. An improved estimate of the strength of the Snowball Earth Hadley circulation will also help to better constrain the climate of a possible Neoproterozoic Snowball Earth and its deglaciation threshold.

The dynamics of the Snowball Earth Hadley circulation for off-equatorial and seasonally-varying insolation

NASA Astrophysics Data System (ADS)

Voigt, A.

2013-08-01

I study the Hadley circulation of a completely ice-covered Snowball Earth through simulations with a comprehensive atmosphere general circulation model. Because the Snowball Earth atmosphere is an example of a dry atmosphere, these simulations allow me to test to what extent dry theories and idealized models capture the dynamics of dry Hadley circulations. Perpetual off-equatorial as well as seasonally-varying insolation is used, extending a previous study for perpetual on-equatorial (equinox) insolation. Vertical diffusion of momentum, representing the momentum transport of dry convection, is fundamental to the momentum budgets of both the winter and summer cells. In the zonal budget, it is the primary process balancing the Coriolis force. In the meridional budget, it mixes meridional momentum between the upper and the lower branch and thereby decelerates the circulation. Because of the latter, the circulation intensifies by a factor of three when vertical diffusion of momentum is suppressed. For seasonally-varying insolation, the circulation undergoes rapid transitions from the weak summer into the strong winter regime. Consistent with previous studies in idealized models, these transitions result from a mean-flow feedback, because of which they are insensitive to the treatment of vertical diffusion of momentum. Overall, the results corroborate previous findings for perpetual on-equatorial insolation. They demonstrate that an appropriate description of dry Hadley circulations, in particular their strength, needs to incorporate the vertical momentum transport by dry convection, a process that is neglected in most dry theories and idealized models. An improved estimate of the strength of the Snowball Earth Hadley circulation will also help to better constrain the climate of a possible Neoproterozoic Snowball Earth and its deglaciation threshold.

An Oceanic General Circulation Model (OGCM) investigation of the Red Sea circulation: 2. Three-dimensional circulation in the Red Sea

NASA Astrophysics Data System (ADS)

Sofianos, Sarantis S.; Johns, William E.

2003-03-01

The three-dimensional circulation of the Red Sea is studied using a set of Miami Isopycnic Coordinate Ocean Model (MICOM) simulations. The model performance is tested against the few available observations in the basin and shows generally good agreement with the main observed features of the circulation. The main findings of this analysis include an intensification of the along-axis flow toward the coasts, with a transition from western intensified boundary flow in the south to eastern intensified flow in the north, and a series of strong seasonal or permanent eddy-like features. Model experiments conducted with different forcing fields (wind-stress forcing only, surface buoyancy forcing only, or both forcings combined) showed that the circulation produced by the buoyancy forcing is stronger overall and dominates the wind-driven part of the circulation. The main circulation pattern is related to the seasonal buoyancy flux (mostly due to the evaporation), which causes the density to increase northward in the basin and produces a northward surface pressure gradient associated with the downward sloping of the sea surface. The response of the eastern boundary to the associated mean cross-basin geostrophic current depends on the stratification and β-effect. In the northern part of the basin this results in an eastward intensification of the northward surface flow associated with the presence of Kelvin waves while in the south the traditional westward intensification due to Rossby waves takes place. The most prominent gyre circulation pattern occurs in the north where a permanent cyclonic gyre is present that is involved in the formation of Red Sea Outflow Water (RSOW). Beneath the surface boundary currents are similarly intensified southward undercurrents that carry the RSOW to the sill to flow out of the basin into the Indian Ocean.

Parameterizing Gravity Waves and Understanding Their Impacts on Venus' Upper Atmosphere

NASA Technical Reports Server (NTRS)

Brecht, A. S.; Bougher, S. W.; Yigit, Erdal

2018-01-01

The complexity of Venus’ upper atmospheric circulation is still being investigated. Simulations of Venus’ upper atmosphere largely depend on the utility of Rayleigh Friction (RF) as a driver and necessary process to reproduce observations (i.e. temperature, density, nightglow emission). Currently, there are additional observations which provide more constraints to help characterize the driver(s) of the circulation. This work will largely focus on the impact parameterized gravity waves have on Venus’ upper atmosphere circulation within a three dimensional hydrodynamic model (Venus Thermospheric General Circulation Model).

Impact of moisture variations on the circulation of the south-west monsoon

NASA Astrophysics Data System (ADS)

Kishtawal, C. M.; Pal, P. K.; Narayanan, M. S.; Manna, S. K.; Sharma, O. P.; Agarwal, Sangeeta; Upadhyaya, H. C.

1993-12-01

The impact of moisture anomalies on the circulation of the south-west Indian monsoon has been studied with a general circulation model. Newtonian relaxation is adopted to subject the model atmosphere under sustained moisture anomalies. The impact of negative anomalies of moisture was seen as a divergent circulation anomaly, while the positive anomaly was a stronger convergent anomaly. Although the humidity fields display a resilient behaviour, and relax back to normal patterns 1-2 days after the forcing terms in humidity are withdrawn, the circulation anomalies created by the moisture variation keeps growing. A feedback between positive moisture anomalies and low level convergence exists, which is terminated in the absence of external forcings.

Numerical simulation of the circulation of the atmosphere of Titan

NASA Technical Reports Server (NTRS)

Hourdin, F.; Levan, P.; Talagrand, O.; Courtin, Regis; Gautier, Daniel; Mckay, Christopher P.

1992-01-01

A three dimensional General Circulation Model (GCM) of Titan's atmosphere is described. Initial results obtained with an economical two dimensional (2D) axisymmetric version of the model presented a strong superrotation in the upper stratosphere. Because of this result, a more general numerical study of superrotation was started with a somewhat different version of the GCM. It appears that for a slowly rotating planet which strongly absorbs solar radiation, circulation is dominated by global equator to pole Hadley circulation and strong superrotation. The theoretical study of this superrotation is discussed. It is also shown that 2D simulations systemically lead to instabilities which make 2D models poorly adapted to numerical simulation of Titan's (or Venus) atmosphere.

Regional transport and dilution during high-pollution episodes in southern France: Summary of findings from the Field Experiment to Constraint Models of Atmospheric Pollution and Emissions Transport (ESCOMPTE)

NASA Astrophysics Data System (ADS)

Drobinski, P.; SaïD, F.; Ancellet, G.; Arteta, J.; Augustin, P.; Bastin, S.; Brut, A.; Caccia, J. L.; Campistron, B.; Cautenet, S.; Colette, A.; Coll, I.; Corsmeier, U.; Cros, B.; Dabas, A.; Delbarre, H.; Dufour, A.; Durand, P.; GuéNard, V.; Hasel, M.; Kalthoff, N.; Kottmeier, C.; Lasry, F.; Lemonsu, A.; Lohou, F.; Masson, V.; Menut, L.; Moppert, C.; Peuch, V. H.; Puygrenier, V.; Reitebuch, O.; Vautard, R.

2007-07-01

In the French Mediterranean basin the large city of Marseille and its industrialized suburbs (oil plants in the Fos-Berre area) are major pollutant sources that cause frequent and hazardous pollution episodes, especially in summer when intense solar heating enhances the photochemical activity and when the sea breeze circulation redistributes pollutants farther north in the countryside. This paper summarizes the findings of 5 years of research on the sea breeze in southern France and related mesoscale transport and dilution of pollutants within the Field Experiment to Constraint Models of Atmospheric Pollution and Emissions Transport (ESCOMPTE) program held in June and July 2001. This paper provides an overview of the experimental and numerical challenges identified before the ESCOMPTE field experiment and summarizes the key findings made in observation, simulation, and theory. We specifically address the role of large-scale atmospheric circulation to local ozone vertical distribution and the mesoscale processes driving horizontal advection of pollutants and vertical transport and mixing via entrainment at the top of the sea breeze or at the front and venting along the sloped terrain. The crucial importance of the interactions between processes of various spatial and temporal scales is thus highlighted. The advances in numerical modeling and forecasting of sea breeze events and ozone pollution episodes in southern France are also underlined. Finally, we conclude and point out some open research questions needing further investigation.

Locally Downscaled and Spatially Customizable Climate Data for Historical and Future Periods for North America

PubMed Central

Wang, Tongli; Hamann, Andreas; Spittlehouse, Dave; Carroll, Carlos

2016-01-01

Large volumes of gridded climate data have become available in recent years including interpolated historical data from weather stations and future predictions from general circulation models. These datasets, however, are at various spatial resolutions that need to be converted to scales meaningful for applications such as climate change risk and impact assessments or sample-based ecological research. Extracting climate data for specific locations from large datasets is not a trivial task and typically requires advanced GIS and data management skills. In this study, we developed a software package, ClimateNA, that facilitates this task and provides a user-friendly interface suitable for resource managers and decision makers as well as scientists. The software locally downscales historical and future monthly climate data layers into scale-free point estimates of climate values for the entire North American continent. The software also calculates a large number of biologically relevant climate variables that are usually derived from daily weather data. ClimateNA covers 1) 104 years of historical data (1901–2014) in monthly, annual, decadal and 30-year time steps; 2) three paleoclimatic periods (Last Glacial Maximum, Mid Holocene and Last Millennium); 3) three future periods (2020s, 2050s and 2080s); and 4) annual time-series of model projections for 2011–2100. Multiple general circulation models (GCMs) were included for both paleo and future periods, and two representative concentration pathways (RCP4.5 and 8.5) were chosen for future climate data. PMID:27275583

Locally Downscaled and Spatially Customizable Climate Data for Historical and Future Periods for North America.

PubMed

Wang, Tongli; Hamann, Andreas; Spittlehouse, Dave; Carroll, Carlos

2016-01-01

Large volumes of gridded climate data have become available in recent years including interpolated historical data from weather stations and future predictions from general circulation models. These datasets, however, are at various spatial resolutions that need to be converted to scales meaningful for applications such as climate change risk and impact assessments or sample-based ecological research. Extracting climate data for specific locations from large datasets is not a trivial task and typically requires advanced GIS and data management skills. In this study, we developed a software package, ClimateNA, that facilitates this task and provides a user-friendly interface suitable for resource managers and decision makers as well as scientists. The software locally downscales historical and future monthly climate data layers into scale-free point estimates of climate values for the entire North American continent. The software also calculates a large number of biologically relevant climate variables that are usually derived from daily weather data. ClimateNA covers 1) 104 years of historical data (1901-2014) in monthly, annual, decadal and 30-year time steps; 2) three paleoclimatic periods (Last Glacial Maximum, Mid Holocene and Last Millennium); 3) three future periods (2020s, 2050s and 2080s); and 4) annual time-series of model projections for 2011-2100. Multiple general circulation models (GCMs) were included for both paleo and future periods, and two representative concentration pathways (RCP4.5 and 8.5) were chosen for future climate data.

Dynamics of the middle atmosphere as observed by the ARISE project

NASA Astrophysics Data System (ADS)

Blanc, Elisabeth

2015-04-01

The atmosphere is a complex system submitted to disturbances in a wide range of scales, including high frequency sources as volcanoes, thunderstorms, tornadoes and at larger scales, gravity waves from deep convection or wind over mountains, atmospheric tides and planetary waves. These waves affect the different atmospheric layers submitted to different temperature and wind systems which strongly control the general atmospheric circulation. The full description of gravity and planetary waves constitutes a challenge for the development of future models of atmosphere and climate. The objective of this paper is to present a review of recent advances obtained in this topic, especially in the framework of the ARISE (Atmospheric dynamics Research InfraStructure in Europe) project

Sun Glint and Sea Surface Salinity Remote Sensing

NASA Technical Reports Server (NTRS)

Dinnat, Emmanuel P.; LeVine, David M.

2007-01-01

A new mission in space, called Aquarius/SAC-D, is being built to measure the salinity of the world's oceans. Salinity is an important parameter for understanding movement of the ocean water. This circulation results in the transportation of heat and is important for understanding climate and climate change. Measuring salinity from space requires precise instruments and a careful accounting for potential sources of error. One of these sources of error is radiation from the sun that is reflected from the ocean surface to the sensor in space. This paper examines this reflected radiation and presents an advanced model for describing this effect that includes the effects of ocean waves on the reflection.

Novelties in pharmacological management of cardiopulmonary resuscitation

PubMed Central

Bartos, Jason A.; Yannopoulos, Demetris

2014-01-01

Purpose of review The ultimate goal of cardiopulmonary resuscitation is long-term neurologically intact survival. Despite numerous well designed studies, the medications currently used in advanced cardiac life support have not demonstrated success in this regard. This review describes the novel therapeutics under investigation to improve functional recovery and survival. Recent findings Whereas current medications focus on achieving return of spontaneous circulation and improved hemodynamics, novel therapies currently in development are focused on improving cellular survival and function by preventing metabolic derangement, protecting mitochondria, and preventing cell death caused by cardiac arrest. Improved cardiac and neurologic function and survival benefits have been observed using animal models of cardiopulmonary arrest. Summary Although substantial data have shown benefits using robust animal models, further human studies are necessary to investigate the potential long-term benefits of these therapies. PMID:23995130

Soy Consumption and the Risk of Prostate Cancer: An Updated Systematic Review and Meta-Analysis

PubMed Central

Ranard, Katherine M.; Jeon, Sookyoung; Erdman, John W.

2018-01-01

Prostate cancer (PCa) is the second most commonly diagnosed cancer in men, accounting for 15% of all cancers in men worldwide. Asian populations consume soy foods as part of a regular diet, which may contribute to the lower PCa incidence observed in these countries. This meta-analysis provides a comprehensive updated analysis that builds on previously published meta-analyses, demonstrating that soy foods and their isoflavones (genistein and daidzein) are associated with a lower risk of prostate carcinogenesis. Thirty articles were included for analysis of the potential impacts of soy food intake, isoflavone intake, and circulating isoflavone levels, on both primary and advanced PCa. Total soy food (p < 0.001), genistein (p = 0.008), daidzein (p = 0.018), and unfermented soy food (p < 0.001) intakes were significantly associated with a reduced risk of PCa. Fermented soy food intake, total isoflavone intake, and circulating isoflavones were not associated with PCa risk. Neither soy food intake nor circulating isoflavones were associated with advanced PCa risk, although very few studies currently exist to examine potential associations. Combined, this evidence from observational studies shows a statistically significant association between soy consumption and decreased PCa risk. Further studies are required to support soy consumption as a prophylactic dietary approach to reduce PCa carcinogenesis. PMID:29300347

Temperature field study of hot water circulation pump shaft system

NASA Astrophysics Data System (ADS)

Liu, Y. Y.; Kong, F. Y.; Daun, X. H.; Zhao, R. J.; Hu, Q. L.

2016-05-01

In the process of engineering application under the condition of hot water circulation pump, problems of stress concentration caused by the temperature rise may happen. In order to study the temperature field in bearing and electric motor chamber of the hot water circulation pump and optimize the structure, in present paper, the model of the shaft system is created through CREO. The model is analyzed by ANSYS workbench, in which the thermal boundary conditions are applied to calculate, which include the calorific values from the bearings, the thermal loss from electric motor and the temperature from the transporting medium. From the result, the finite element model can reflect the distribution of thermal field in hot water circulation pump. Further, the results show that the maximum temperature locates in the bearing chamber.The theoretical guidance for the electric motor heat dissipation design of the hot water circulation pump can be achieved.

Forecasting of Storm Surge Floods Using ADCIRC and Optimized DEMs

NASA Technical Reports Server (NTRS)

Valenti, Elizabeth; Fitzpatrick, Patrick

2005-01-01

Increasing the accuracy of storm surge flood forecasts is essential for improving preparedness for hurricanes and other severe storms and, in particular, for optimizing evacuation scenarios. An interactive database, developed by WorldWinds, Inc., contains atlases of storm surge flood levels for the Louisiana/Mississippi gulf coast region. These atlases were developed to improve forecasting of flooding along the coastline and estuaries and in adjacent inland areas. Storm surge heights depend on a complex interaction of several factors, including: storm size, central minimum pressure, forward speed of motion, bottom topography near the point of landfall, astronomical tides, and most importantly, maximum wind speed. The information in the atlases was generated in over 100 computational simulations, partly by use of a parallel-processing version of the ADvanced CIRCulation (ADCIRC) model. ADCIRC is a nonlinear computational model of hydrodynamics, developed by the U.S. Army Corps of Engineers and the US Navy, as a family of two- and three-dimensional finite element based codes. It affords a capability for simulating tidal circulation and storm surge propagation over very large computational domains, while simultaneously providing high-resolution output in areas of complex shoreline and bathymetry. The ADCIRC finite-element grid for this project covered the Gulf of Mexico and contiguous basins, extending into the deep Atlantic Ocean with progressively higher resolution approaching the study area. The advantage of using ADCIRC over other storm surge models, such as SLOSH, is that input conditions can include all or part of wind stress, tides, wave stress, and river discharge, which serve to make the model output more accurate.

Physiologically Based Pharmacokinetic Model for Long-Circulating Inorganic Nanoparticles.

PubMed

Liang, Xiaowen; Wang, Haolu; Grice, Jeffrey E; Li, Li; Liu, Xin; Xu, Zhi Ping; Roberts, Michael S

2016-02-10

A physiologically based pharmacokinetic model was developed for accurately characterizing and predicting the in vivo fate of long-circulating inorganic nanoparticles (NPs). This model is built based on direct visualization of NP disposition details at the organ and cellular level. It was validated with multiple data sets, indicating robust inter-route and interspecies predictive capability. We suggest that the biodistribution of long-circulating inorganic NPs is determined by the uptake and release of NPs by phagocytic cells in target organs.

A Wind Tunnel Model to Explore Unsteady Circulation Control for General Aviation Applications

NASA Technical Reports Server (NTRS)

Cagle, Christopher M.; Jones, Gregory S.

2002-01-01

Circulation Control airfoils have been demonstrated to provide substantial improvements in lift over conventional airfoils. The General Aviation Circular Control model is an attempt to address some of the concerns of this technique. The primary focus is to substantially reduce the amount of air mass flow by implementing unsteady flow. This paper describes a wind tunnel model that implements unsteady circulation control by pulsing internal pneumatic valves and details some preliminary results from the first test entry.

Empirical justification of the elementary model of money circulation

NASA Astrophysics Data System (ADS)

Schinckus, Christophe; Altukhov, Yurii A.; Pokrovskii, Vladimir N.

2018-03-01

This paper proposes an elementary model describing the money circulation for a system, composed by a production system, the government, a central bank, commercial banks and their customers. A set of equations for the system determines the main features of interaction between the production and the money circulation. It is shown, that the money system can evolve independently of the evolution of production. The model can be applied to any national economy but we will illustrate our claim in the context of the Russian monetary system.

The Gottingen minipig is a model of the hematopoietic acute radiation syndrome: G-CSF stimulates hematopoiesis and enhances survival from lethal total-body gamma-irradiation

PubMed Central

Moroni, Maria; Ngudiankama, Barbara F.; Christensen, Christine; Olsen, Cara H.; Owens, Rossitsa; Lombardini, Eric D.; Holt, Rebecca K.; Whitnall, Mark H.

2013-01-01

Purpose We are characterizing the Gottingen minipig as an additional large animal model for advanced drug testing for the Acute Radiation Syndrome (ARS), to enhance discovery and development of novel radiation countermeasures. Among the advantages provided by this model, the similarities to human hematological parameters and dynamics of cell loss/recovery following irradiation provide a convenient means to compare efficacy of drugs known to affect bone marrow cellularity and hematopoiesis. Methods and Materials Male Gottingen minipigs, 4–5 months old and weighing 9–11 kg were used for this study. We tested the standard off-label treatment for ARS, rhG-CSF (Neupogen®, 10 μg/kg/day for 17 days), at the estimated LD70/30 total-body gamma-irradiation (TBI) radiation dose for the hematopoietic syndrome, starting 24 hours after irradiation. Results Results indicate G-CSF enhanced survival, stimulated recovery from neutropenia, and induced mobilization of hematopoietic progenitor cells. In addition, administration of G-CSF resulted in maturation of monocytes/macrophages. Conclusion These results support continuing efforts toward validation of the minipig as a large animal model for advanced testing of radiation countermeasures and characterization of the pathophysiology of ARS, and suggest that the efficacy of G-CSF in improving survival after total body irradiation may involve mechanisms other than increasing numbers of circulating granulocytes. PMID:23845847

Biological and Environmental Research Exascale Requirements Review. An Office of Science review sponsored jointly by Advanced Scientific Computing Research and Biological and Environmental Research, March 28-31, 2016, Rockville, Maryland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arkin, Adam; Bader, David C.; Coffey, Richard

Understanding the fundamentals of genomic systems or the processes governing impactful weather patterns are examples of the types of simulation and modeling performed on the most advanced computing resources in America. High-performance computing and computational science together provide a necessary platform for the mission science conducted by the Biological and Environmental Research (BER) office at the U.S. Department of Energy (DOE). This report reviews BER’s computing needs and their importance for solving some of the toughest problems in BER’s portfolio. BER’s impact on science has been transformative. Mapping the human genome, including the U.S.-supported international Human Genome Project that DOEmore » began in 1987, initiated the era of modern biotechnology and genomics-based systems biology. And since the 1950s, BER has been a core contributor to atmospheric, environmental, and climate science research, beginning with atmospheric circulation studies that were the forerunners of modern Earth system models (ESMs) and by pioneering the implementation of climate codes onto high-performance computers. See http://exascaleage.org/ber/ for more information.« less

Experimental and code simulation of a station blackout scenario for APR1400 with test facility ATLAS and MARS code

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, X. G.; Kim, Y. S.; Choi, K. Y.

2012-07-01

A SBO (station blackout) experiment named SBO-01 was performed at full-pressure IET (Integral Effect Test) facility ATLAS (Advanced Test Loop for Accident Simulation) which is scaled down from the APR1400 (Advanced Power Reactor 1400 MWe). In this study, the transient of SBO-01 is discussed and is subdivided into three phases: the SG fluid loss phase, the RCS fluid loss phase, and the core coolant depletion and core heatup phase. In addition, the typical phenomena in SBO-01 test - SG dryout, natural circulation, core coolant boiling, the PRZ full, core heat-up - are identified. Furthermore, the SBO-01 test is reproduced bymore » the MARS code calculation with the ATLAS model which represents the ATLAS test facility. The experimental and calculated transients are then compared and discussed. The comparison reveals there was malfunction of equipments: the SG leakage through SG MSSV and the measurement error of loop flow meter. As the ATLAS model is validated against the experimental results, it can be further employed to investigate the other possible SBO scenarios and to study the scaling distortions in the ATLAS. (authors)« less

A Review of Recent Advances in Research on Extreme Heat Events

NASA Technical Reports Server (NTRS)

Horton, Radley M.; Mankin, Justin S.; Lesk, Corey; Coffel, Ethan; Raymond, Colin

2016-01-01

Reviewing recent literature, we report that changes in extreme heat event characteristics such as magnitude, frequency, and duration are highly sensitive to changes in mean global-scale warming. Numerous studies have detected significant changes in the observed occurrence of extreme heat events, irrespective of how such events are defined. Further, a number of these studies have attributed present-day changes in the risk of individual heat events and the documented global-scale increase in such events to anthropogenic-driven warming. Advances in process-based studies of heat events have focused on the proximate land-atmosphere interactions through soil moisture anomalies, and changes in occurrence of the underlying atmospheric circulation associated with heat events in the mid-latitudes. While evidence for a number of hypotheses remains limited, climate change nevertheless points to tail risks of possible changes in heat extremes that could exceed estimates generated from model outputs of mean temperature. We also explore risks associated with compound extreme events and nonlinear impacts associated with extreme heat.

Geothermal Program Review XI: proceedings. Geothermal Energy - The Environmental Responsible Energy Technology for the Nineties

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1993-10-01

These proceedings contain papers pertaining to current research and development of geothermal energy in the USA. The seven sections of the document are: Overview, The Geysers, Exploration and Reservoir Characterization, Drilling, Energy Conversion, Advanced Systems, and Potpourri. The Overview presents current DOE energy policy and industry perspectives. Reservoir studies, injection, and seismic monitoring are reported for the geysers geothermal field. Aspects of geology, geochemistry and models of geothermal exploration are described. The Drilling section contains information on lost circulation, memory logging tools, and slim-hole drilling. Topics considered in energy conversion are efforts at NREL, condensation on turbines and geothermal materials.more » Advanced Systems include hot dry rock studies and Fenton Hill flow testing. The Potpourri section concludes the proceedings with reports on low-temperature resources, market analysis, brines, waste treatment biotechnology, and Bonneville Power Administration activities. Selected papers have been indexed separately for inclusion in the Energy Science and Technology Database.« less

Proposition of stair climb of a drop using chemical wettability gradient

NASA Astrophysics Data System (ADS)

Seerha, Prabh P. S.; Kumar, Parmod; Das, Arup K.; Mitra, Sushanta K.

2017-07-01

We propose a passive technique for a drop to climb along the staircase textured surface using chemical wettability gradients. The stair structure, droplet configuration, and contact angle gradient are modeled using Lagrangian smoothed particle hydrodynamics. The stair climb efficiency of the droplet is found to be a function of wettability gradient strength. Using analytical balance of actuation and resistive forces across droplets, physical reasons behind stair climbing are established and influencing parameters are identified. Evolution of the droplet shape along with the advancing and the receding contact angles is presented from where instantaneous actuation and hysteresis forces are calculated. Using history of Lagrangian particles, circulation at the foot of stairs and progressing development of the advancing drop front are monitored. Higher efficiency in stair climbing in the case of a bigger sized drop than smaller one is obtained from simulation results and realized from force balance. Difficulty in climbing steeper stairs is also demonstrated to delineate the effect of gravitational pull against the actuation force due to the wettability gradient.

Antenatal noninvasive DNA testing: clinical experience and impact.

PubMed

Ferres, Millie A; Hui, Lisa; Bianchi, Diana W

2014-08-01

Nearly two decades ago, the discovery of circulating cell-free fetal DNA in maternal blood created a paradigm shift in prenatal testing. Recent advances in DNA sequencing technology have facilitated the rapid translation of DNA-based testing into clinical antenatal care. In this review, we summarize the technical approaches and current clinical applications of noninvasive testing using cell-free DNA in maternal plasma. We discuss the impact of these tests on clinical care, outline proposed integration models, and suggest future directions for the field. The use of cell-free DNA in maternal blood for the detection of fetal rhesus D antigen status, fetal sex, and common whole chromosomal aneuploidies is now well established, although testing for aneuploidy is still considered screening and not diagnostic. Further advances in technology and bioinformatics may see future clinical applications extend to the noninvasive detection of fetal subchromosomal aneuploidy, single gene disorders, and the entire fetal genome. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

Pressure Regulator With Internal Ejector Circulation Pump, Flow and Pressure Measurement Porting, and Fuel Cell System Integration Options

NASA Technical Reports Server (NTRS)

Vasquez, Arturo

2011-01-01

An advanced reactant pressure regulator with an internal ejector reactant circulation pump has been developed to support NASA's future fuel cell power systems needs. These needs include reliable and safe operation in variable-gravity environments, and for exploration activities with both manned and un manned vehicles. This product was developed for use in Proton Exchange Membrane Fuel Cell (PEMFC) power plant reactant circulation systems, but the design could also be applied to other fuel cell system types, (e.g., solid-oxide or alkaline) or for other gas pressure regulation and circulation needs. The regulator design includes porting for measurement of flow and pressure at key points in the system, and also includes several fuel cell system integration options. NASA has recognized ejectors as a viable alternative to mechanical pumps for use in spacecraft fuel cell power systems. The ejector motive force is provided by a variable, high-pressure supply gas that travels through the ejector s jet nozzle, whereby the pressure energy of the fluid stream is converted to kinetic energy in the gas jet. The ejector can produce circulation-to-consumption-flow ratios that are relatively high (2-3 times), and this phenomenon can potentially (with proper consideration of the remainder of the fuel cell system s design) be used to provide completely for reactant pre-humidification and product water removal in a fuel cell system. Specifically, a custom pressure regulator has been developed that includes: (1) an ejector reactant circulation pump (with interchangeable jet nozzles and mixer sections, gas-tight sliding and static seals in required locations, and internal fluid porting for pressure-sensing at the regulator's control elements) and (2) internal fluid porting to allow for flow rate and system pressure measurements. The fluid porting also allows for inclusion of purge, relief, and vacuum-breaker check valves on the regulator assembly. In addition, this regulator could also be used with NASA's advanced nonflow-through fuel cell power systems by simply incorporating a jet nozzle with an appropriate nozzle diameter.

Seasonal Drought Prediction: Advances, Challenges, and Future Prospects

NASA Astrophysics Data System (ADS)

Hao, Zengchao; Singh, Vijay P.; Xia, Youlong

2018-03-01

Drought prediction is of critical importance to early warning for drought managements. This review provides a synthesis of drought prediction based on statistical, dynamical, and hybrid methods. Statistical drought prediction is achieved by modeling the relationship between drought indices of interest and a suite of potential predictors, including large-scale climate indices, local climate variables, and land initial conditions. Dynamical meteorological drought prediction relies on seasonal climate forecast from general circulation models (GCMs), which can be employed to drive hydrological models for agricultural and hydrological drought prediction with the predictability determined by both climate forcings and initial conditions. Challenges still exist in drought prediction at long lead time and under a changing environment resulting from natural and anthropogenic factors. Future research prospects to improve drought prediction include, but are not limited to, high-quality data assimilation, improved model development with key processes related to drought occurrence, optimal ensemble forecast to select or weight ensembles, and hybrid drought prediction to merge statistical and dynamical forecasts.

Development of the Joint NASA/NCAR General Circulation Model

NASA Technical Reports Server (NTRS)

Lin, S.-J.; Rood, R. B.

1999-01-01

The Data Assimilation Office at NASA/Goddard Space Flight Center is collaborating with NCAR/CGD in an ambitious proposal for the development of a unified climate, numerical weather prediction, and chemistry transport model which is suitable for global data assimilation of the physical and chemical state of the Earth's atmosphere. A prototype model based on the NCAR CCM3 physics and the NASA finite-volume dynamical core has been built. A unique feature of the NASA finite-volume dynamical core is its advanced tracer transport algorithm on the floating Lagrangian control-volume coordinate. The model currently has a highly idealized ozone production/loss chemistry derived from the observed 2D (latitude-height) climatology of the recent decades. Nevertheless, the simulated horizontal wave structure of the total ozone is in good qualitative agreement with the observed (TOMS). Long term climate simulations and NWP experiments have been carried out. Current up to date status and futur! e plan will be discussed in the conference.

Impact of Data Assimilation And Resolution On Modeling The Gulf Stream Pathway

DTIC Science & Technology

2011-11-18

currents could be generated by either the Deep Western Boundary Current (DWBC) associated with the Meridional Overturning Circulation (MOC) or by...abyssal gyre centered directly beneath the surface gyre. Figure 7. Meridional overturning circulation stream function for four 1/12° global HYCOM... circulation and have a weak overturning circulation . The Gulf Stream path is poorly simulated without the steering by the abyssal circulation . A

The Pattern and Dynamics of the Meridional Overturning Circulation in the Upper Ocean

DTIC Science & Technology

2008-09-01

Atlantic . Figure 4a shows that the center of meridional overturning circulation occurs at a level of about one kilometer. Circulation is weak at...maintenance of the meridional overturning circulation in the Atlantic Ocean. 5. Global Simulation The most exciting experiment would be to fully model the...mechanisms responsible for the strength and maintenance of the meridional overturning circulation in the Atlantic Ocean are not

Research, development, and demonstration of lead-acid batteries for electric vehicle propulsion

NASA Astrophysics Data System (ADS)

1984-06-01

Research on electric motor vehicles is reported in the areas of active material utilization and active material integrity; design and fabrication of components, advanced cells, and modules; cell testing; and battery thermal management and electrolyte circulation subsystems.

Panel 3: Genetics and Precision Medicine of Otitis Media.

PubMed

Lin, Jizhen; Hafrén, Hena; Kerschner, Joseph; Li, Jian-Dong; Brown, Steve; Zheng, Qing Y; Preciado, Diego; Nakamura, Yoshihisa; Huang, Qiuhong; Zhang, Yan

2017-04-01

Objective The objective is to perform a comprehensive review of the literature up to 2015 on the genetics and precision medicine relevant to otitis media. Data Sources PubMed database of the National Library of Medicine. Review Methods Two subpanels were formed comprising experts in the genetics and precision medicine of otitis media. Each of the panels reviewed the literature in their respective fields and wrote draft reviews. The reviews were shared with all panel members, and a merged draft was created. The entire panel met at the 18th International Symposium on Recent Advances in Otitis Media in June 2015 and discussed the review and refined the content. A final draft was made, circulated, and approved by the panel members. Conclusion Many genes relevant to otitis media have been identified in the last 4 years in advancing our knowledge regarding the predisposition of the middle ear mucosa to commensals and pathogens. Advances include mutant animal models and clinical studies. Many signaling pathways are involved in the predisposition of otitis media. Implications for Practice New knowledge on the genetic background relevant to otitis media forms a basis of novel potential interventions, including potential new ways to treat otitis media.

Large-Scale Ocean Circulation-Cloud Interactions Reduce the Pace of Transient Climate Change

NASA Technical Reports Server (NTRS)

Trossman, D. S.; Palter, J. B.; Merlis, T. M.; Huang, Y.; Xia, Y.

2016-01-01

Changes to the large scale oceanic circulation are thought to slow the pace of transient climate change due, in part, to their influence on radiative feedbacks. Here we evaluate the interactions between CO2-forced perturbations to the large-scale ocean circulation and the radiative cloud feedback in a climate model. Both the change of the ocean circulation and the radiative cloud feedback strongly influence the magnitude and spatial pattern of surface and ocean warming. Changes in the ocean circulation reduce the amount of transient global warming caused by the radiative cloud feedback by helping to maintain low cloud coverage in the face of global warming. The radiative cloud feedback is key in affecting atmospheric meridional heat transport changes and is the dominant radiative feedback mechanism that responds to ocean circulation change. Uncertainty in the simulated ocean circulation changes due to CO2 forcing may contribute a large share of the spread in the radiative cloud feedback among climate models.

The Emergent Landscape of Detecting EGFR Mutations Using Circulating Tumor DNA in Lung Cancer

PubMed Central

Wei, Fang; Wong, David T.; Su, Wu-Chou

2015-01-01

The advances in targeted therapies for lung cancer are based on the evaluation of specific gene mutations especially the epidermal growth factor receptor (EGFR). The assays largely depend on the acquisition of tumor tissue via biopsy before the initiation of therapy or after the onset of acquired resistance. However, the limitations of tissue biopsy including tumor heterogeneity and insufficient tissues for molecular testing are impotent clinical obstacles for mutation analysis and lung cancer treatment. Due to the invasive procedure of tissue biopsy and the progressive development of drug-resistant EGFR mutations, the effective initial detection and continuous monitoring of EGFR mutations are still unmet requirements. Circulating tumor DNA (ctDNA) detection is a promising biomarker for noninvasive assessment of cancer burden. Recent advancement of sensitive techniques in detecting EGFR mutations using ctDNA enables a broad range of clinical applications, including early detection of disease, prediction of treatment responses, and disease progression. This review not only introduces the biology and clinical implementations of ctDNA but also includes the updating information of recent advancement of techniques for detecting EGFR mutation using ctDNA in lung cancer. PMID:26448936

A modeling study on the hydrodynamics of a coastal embayment occupied by mussel farms (Ria de Ares-Betanzos, NW Iberian Peninsula)

NASA Astrophysics Data System (ADS)

Duarte, Pedro; Alvarez-Salgado, Xosé Antón; Fernández-Reiriz, Maria José; Piedracoba, Silvia; Labarta, Uxío

2014-06-01

The present study suggests that both under upwelling and downwelling winds, the residual circulation of Ria de Ares-Betanzos remains positive with a strong influence from river discharge and a positive feedback from wind, unlike what is generally accepted for Galician rias. Furthermore, mussel cultivation areas may reduce residual velocities by almost 40%, suggesting their potential feedbacks on food replenishment for cultivated mussels. The Ria de Ares-Betanzos is a partially stratified estuary in the NW Iberian upwelling system where blue mussels are extensively cultured on hanging ropes. This type of culture depends to a large extent on water circulation and residence times, since mussels feed on suspended particles. Therefore, understanding the role of tides, continental runoff, and winds on the circulation of this embayment has important practical applications. Furthermore, previous works have emphasized the potential importance of aquaculture leases on water circulation within coastal ecosystems, with potential negative feedbacks on production carrying capacity. Here we implemented and validated a 3D hydrodynamic numerical model for the Ria de Ares-Betanzos to (i) evaluate the relative importance of the forcing agents on the circulation within the ria and (ii) estimate the importance of culture leases on circulation patterns at the scale of the mussel farms from model simulations. The model was successfully validated with empirical current velocity data collected during July and October 2007 using an assortment of efficiency criteria. Model simulations were carried out to isolate the effects of wind and river flows on circulation patterns.

Large-Scale Transport Responses to Tropospheric Circulation Changes Using GEOS-5

NASA Technical Reports Server (NTRS)

Orbe, Clara; Molod, Andrea; Arnold, Nathan; Waugh, Darryn W.; Yang, Huang

2017-01-01

The mean age since air was last at the Northern Hemisphere midlatitude surface is a fundamental property of tropospheric transport. Recent comparisons among chemistry climate models, however, reveal that there are large differences in the mean age among models and that these differences are most likely related to differences in tropical (parameterized) convection. Here we use aquaplanet simulations of the Goddard Earth Observing System Model Version 5 (GEOS-5) to explore the sensitivity of the mean age to changes in the tropical circulation. Tropical circulation changes are forced by prescribed localized off-equatorial warm sea surface temperature anomalies that (qualitatively) reproduce the convection and circulation differences among the comprehensive models. Idealized chemical species subject to prescribed OH loss are also integrated in parallel in order to illustrate the impact of tropical transport changes on interhemispheric constituent transport.

Thrust Removal Scheme for the FAST-MAC Circulation Control Model Tested in the National Transonic Facility

NASA Technical Reports Server (NTRS)

Chan, David T.; Milholen, William E., II; Jones, Gregory S.; Goodliff, Scott L.

2014-01-01

A second wind tunnel test of the FAST-MAC circulation control semi-span model was recently completed in the National Transonic Facility at the NASA Langley Research Center. The model allowed independent control of four circulation control plenums producing a high momentum jet from a blowing slot near the wing trailing edge that was directed over a 15% chord simple-hinged flap. The model was configured for transonic testing of the cruise configuration with 0deg flap deflection to determine the potential for drag reduction with the circulation control blowing. Encouraging results from analysis of wing surface pressures suggested that the circulation control blowing was effective in reducing the transonic drag on the configuration, however this could not be quantified until the thrust generated by the blowing slot was correctly removed from the force and moment balance data. This paper will present the thrust removal methodology used for the FAST-MAC circulation control model and describe the experimental measurements and techniques used to develop the methodology. A discussion on the impact to the force and moment data as a result of removing the thrust from the blowing slot will also be presented for the cruise configuration, where at some Mach and Reynolds number conditions, the thrust-removed corrected data showed that a drag reduction was realized as a consequence of the blowing.

Feature-oriented regional modeling and simulations in the Gulf of Maine and Georges Bank

NASA Astrophysics Data System (ADS)

Gangopadhyay, Avijit; Robinson, Allan R.; Haley, Patrick J.; Leslie, Wayne G.; Lozano, Carlos J.; Bisagni, James J.; Yu, Zhitao

2003-03-01

The multiscale synoptic circulation system in the Gulf of Maine and Georges Bank (GOMGB) region is presented using a feature-oriented approach. Prevalent synoptic circulation structures, or 'features', are identified from previous observational studies. These features include the buoyancy-driven Maine Coastal Current, the Georges Bank anticyclonic frontal circulation system, the basin-scale cyclonic gyres (Jordan, Georges and Wilkinson), the deep inflow through the Northeast Channel (NEC), the shallow outflow via the Great South Channel (GSC), and the shelf-slope front (SSF). Their synoptic water-mass ( T- S) structures are characterized and parameterized in a generalized formulation to develop temperature-salinity feature models. A synoptic initialization scheme for feature-oriented regional modeling and simulation (FORMS) of the circulation in the coastal-to-deep region of the GOMGB system is then developed. First, the temperature and salinity feature-model profiles are placed on a regional circulation template and then objectively analyzed with appropriate background climatology in the coastal region. Furthermore, these fields are melded with adjacent deep-ocean regional circulation (Gulf Stream Meander and Ring region) along and across the SSF. These initialization fields are then used for dynamical simulations via the primitive equation model. Simulation results are analyzed to calibrate the multiparameter feature-oriented modeling system. Experimental short-term synoptic simulations are presented for multiple resolutions in different regions with and without atmospheric forcing. The presented 'generic and portable' methodology demonstrates the potential of applying similar FORMS in many other regions of the Global Coastal Ocean.

In vivo flow cytometry of circulating clots using negative photothermal and photoacoustic contrasts.

PubMed

Galanzha, Ekaterina I; Sarimollaoglu, Mustafa; Nedosekin, Dmitry A; Keyrouz, Salah G; Mehta, Jawahar L; Zharov, Vladimir P

2011-10-01

Conventional photothermal (PT) and photoacousic (PA) imaging, spectroscopy, and cytometry are preferentially based on positive PT/PA effects, when signals are above background. Here, we introduce PT/PA technique based on detection of negative signals below background. Among various new applications, we propose label-free in vivo flow cytometry of circulating clots. No method has been developed for the early detection of clots of different compositions as a source of thromboembolism including ischemia at strokes and myocardial infarction. When a low-absorbing, platelet-rich clot passes a laser-irradiated vessel volume, a transient decrease in local absorption results in an ultrasharp negative PA hole in blood background. Using this phenomenon alone or in combination with positive contrasts, we demonstrated identification of white, red, and mixed clots on a mouse model of myocardial infarction and human blood. The concentration and size of clots were measured with threshold down to few clots in the entire circulation with size as low as 20 μm. This multiparameter diagnostic platform using portable personal high-speed flow cytometer with negative dynamic contrast mode has potential to real-time defining risk factors for cardiovascular diseases, and for prognosis and prevention of stroke or use clot count as a marker of therapy efficacy. Possibility for label-free detection of platelets, leukocytes, tumor cells or targeting themby negative PA probes (e.g., nonabsorbing beads or bubbles) is also highlighted. Copyright © 2011 International Society for Advancement of Cytometry.

Study on bubbly flow behavior in natural circulation reactor by thermal-hydraulic simulation tests with SF6-Gas and ethanol liquid

NASA Astrophysics Data System (ADS)

Kondo, Yoshiyuki; Suga, Keishi; Hibi, Koki; Okazaki, Toshihiko; Komeno, Toshihiro; Kunugi, Tomoaki; Serizawa, Akimi; Yoneda, Kimitoshi; Arai, Takahiro

2009-02-01

An advanced experimental technique has been developed to simulate two-phase flow behavior in a light water reactor (LWR). The technique applies three kinds of methods; (1) use of sulfur-hexafluoride (SF6) gas and ethanol (C2H5OH) liquid at atmospheric temperature and a pressure less than 1.0MPa, where the fluid properties are similar to steam-water ones in the LWR, (2) generation of bubble with a sintering tube, which simulates bubble generation on heated surface in the LWR, (3) measurement of detailed bubble distribution data with a bi-optical probe (BOP), (4) and measurement of liquid velocities with the tracer liquid. This experimental technique provides easy visualization of flows by using a large scale experimental apparatus, which gives three-dimensional flows, and measurement of detailed spatial distributions of two-phase flow. With this technique, we have carried out experiments simulating two-phase flow behavior in a single-channel geometry, a multi-rod-bundle one, and a horizontal-tube-bundle one on a typical natural circulation reactor system. Those experiments have clarified a) a flow regime map in a rod bundle on the transient region between bubbly and churn flow, b) three-dimensional flow behaviour in rod-bundles where inter-subassembly cross-flow occurs, c) bubble-separation behavior with consideration of reactor internal structures. The data have given analysis models for the natural circulation reactor design with good extrapolation.

The Southwest Pacific Ocean circulation and climate experiment (SPICE)

NASA Astrophysics Data System (ADS)

Ganachaud, A.; Cravatte, S.; Melet, A.; Schiller, A.; Holbrook, N. J.; Sloyan, B. M.; Widlansky, M. J.; Bowen, M.; Verron, J.; Wiles, P.; Ridgway, K.; Sutton, P.; Sprintall, J.; Steinberg, C.; Brassington, G.; Cai, W.; Davis, R.; Gasparin, F.; Gourdeau, L.; Hasegawa, T.; Kessler, W.; Maes, C.; Takahashi, K.; Richards, K. J.; Send, U.

2014-11-01

The Southwest Pacific Ocean Circulation and Climate Experiment (SPICE) is an international research program under the auspices of CLIVAR. The key objectives are to understand the Southwest Pacific Ocean circulation and the South Pacific Convergence Zone (SPCZ) dynamics, as well as their influence on regional and basin-scale climate patterns. South Pacific thermocline waters are transported in the westward flowing South Equatorial Current (SEC) toward Australia and Papua-New Guinea. On its way, the SEC encounters the numerous islands and straits of the Southwest Pacific and forms boundary currents and jets that eventually redistribute water to the equator and high latitudes. The transit in the Coral, Solomon, and Tasman Seas is of great importance to the climate system because changes in either the temperature or the amount of water arriving at the equator have the capability to modulate the El Niño-Southern Oscillation, while the southward transports influence the climate and biodiversity in the Tasman Sea. After 7 years of substantial in situ oceanic observational and modeling efforts, our understanding of the region has much improved. We have a refined description of the SPCZ behavior, boundary currents, pathways, and water mass transformation, including the previously undocumented Solomon Sea. The transports are large and vary substantially in a counter-intuitive way, with asymmetries and gating effects that depend on time scales. This paper provides a review of recent advancements and discusses our current knowledge gaps and important emerging research directions.

Research on Parallel Three Phase PWM Converters base on RTDS

NASA Astrophysics Data System (ADS)

Xia, Yan; Zou, Jianxiao; Li, Kai; Liu, Jingbo; Tian, Jun

2018-01-01

Converters parallel operation can increase capacity of the system, but it may lead to potential zero-sequence circulating current, so the control of circulating current was an important goal in the design of parallel inverters. In this paper, the Real Time Digital Simulator (RTDS) is used to model the converters parallel system in real time and study the circulating current restraining. The equivalent model of two parallel converters and zero-sequence circulating current(ZSCC) were established and analyzed, then a strategy using variable zero vector control was proposed to suppress the circulating current. For two parallel modular converters, hardware-in-the-loop(HIL) study based on RTDS and practical experiment were implemented, results prove that the proposed control strategy is feasible and effective.

Exploring the Impact of Students' Learning Approach on Collaborative Group Modeling of Blood Circulation

ERIC Educational Resources Information Center

Lee, Shinyoung; Kang, Eunhee; Kim, Heui-Baik

2015-01-01

This study aimed to explore the effect on group dynamics of statements associated with deep learning approaches (DLA) and their contribution to cognitive collaboration and model development during group modeling of blood circulation. A group was selected for an in-depth analysis of collaborative group modeling. This group constructed a model in a…

Circulating monocyte chemoattractant protein‐1 (MCP‐1) is associated with cachexia in treatment‐naïve pancreatic cancer patients

PubMed Central

Talbert, Erin E.; Lewis, Heather L.; Farren, Matthew R.; Ramsey, Mitchell L.; Chakedis, Jeffery M.; Rajasekera, Priyani; Haverick, Ericka; Sarna, Angela; Bloomston, Mark; Pawlik, Timothy M.; Zimmers, Teresa A.; Lesinski, Gregory B.; Hart, Phil A.; Dillhoff, Mary E.; Schmidt, Carl R.

2018-01-01

Abstract Background Cancer‐associated wasting, termed cancer cachexia, has a profound effect on the morbidity and mortality of cancer patients but remains difficult to recognize and diagnose. While increases in circulating levels of a number of inflammatory cytokines have been associated with cancer cachexia, these associations were generally made in patients with advanced disease and thus may be associated with disease progression rather than directly with the cachexia syndrome. Thus, we sought to assess potential biomarkers of cancer‐induced cachexia in patients with earlier stages of disease. Methods A custom multiplex array was used to measure circulating levels of 25 soluble factors from 70 pancreatic cancer patients undergoing attempted tumour resections. A high‐sensitivity multiplex was used for increased sensitivity for nine cytokines. Results Resectable pancreatic cancer patients with cachexia had low levels of canonical pro‐inflammatory cytokines including interleukin‐6 (IL‐6), interleukin‐1β (IL‐1β), interferon‐γ (IFN‐γ), and tumour necrosis factor (TNF). Even in our more sensitive analysis, these cytokines were not associated with cancer cachexia. Of the 25 circulating factors tested, only monocyte chemoattractant protein‐1 (MCP‐1) was increased in treatment‐naïve cachectic patients compared with weight stable patients and identified as a potential biomarker for cancer cachexia. Although circulating levels of leptin and granulocyte‐macrophage colony‐stimulating factor (GM‐CSF) were found to be decreased in the same cohort of treatment‐naïve cachectic patients, these factors were closely associated with body mass index, limiting their utility as cancer cachexia biomarkers. Conclusions Unlike in advanced disease, it is possible that cachexia in patients with resectable pancreatic cancer is not associated with high levels of classical markers of systemic inflammation. However, cachectic, treatment‐naïve patients have higher levels of MCP‐1, suggesting that MCP‐1 may be useful as a biomarker of cancer cachexia. PMID:29316343

Coupled energy-balance/ice-sheet model simulations of the glacial cycle: A possible connection between terminations and terrigenous dust

NASA Astrophysics Data System (ADS)

Peltier, W. Richard; Marshall, Shawn

1995-07-01

We apply a coupled energy-balance/ice-sheet climate model in an investigation of northern hemisphere ice-sheet advance and retreat over the last glacial cycle. When driven only by orbital insolation variations, the model predicts ice-sheet advances over the continents of North America and Eurasia that are in good agreement with geological reconstructions in terms of the timescale of advance and the spatial positioning of the main ice masses. The orbital forcing alone, however, is unable to induce the observed rapid ice-sheet retreat, and we conclude that additional climatic feedbacks not explicitly included in the basic model must be acting. In the analyses presented here we have parameterized a number of potentially important effects in order to test their relative influence on the process of glacial termination. These include marine instability, thermohaline circulation effects, carbon dioxide variations, and snow albedo changes caused by dust loading during periods of high atmospheric aerosol concentration. For the purpose of these analyses the temporal changes in the latter two variables were inferred from ice core records. Of these various influences, our analyses suggest that the albedo variations in the ice-sheet ablation zone caused by dust loading may represent an extremely important ablation mechanism. Using our parameterization of "dirty" snow in the ablation zone we find glacial retreat to be strongly accelerated, such that complete collapse of the otherwise stable Laurentide ice sheet ensues. The last glacial maximum configurations of the Laurentide and Fennoscandian complexes are also brought into much closer accord with the ICE-3G reconstruction of Tushingham and Peltier (1991,1992) and the ICE-4G reconstruction of Peltier (1994) when this effect is reasonably introduced.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Z.; Zweibaum, N.; Shao, M.

The University of California, Berkeley (UCB) is performing thermal hydraulics safety analysis to develop the technical basis for design and licensing of fluoride-salt-cooled, high-temperature reactors (FHRs). FHR designs investigated by UCB use natural circulation for emergency, passive decay heat removal when normal decay heat removal systems fail. The FHR advanced natural circulation analysis (FANCY) code has been developed for assessment of passive decay heat removal capability and safety analysis of these innovative system designs. The FANCY code uses a one-dimensional, semi-implicit scheme to solve for pressure-linked mass, momentum and energy conservation equations. Graph theory is used to automatically generate amore » staggered mesh for complicated pipe network systems. Heat structure models have been implemented for three types of boundary conditions (Dirichlet, Neumann and Robin boundary conditions). Heat structures can be composed of several layers of different materials, and are used for simulation of heat structure temperature distribution and heat transfer rate. Control models are used to simulate sequences of events or trips of safety systems. A proportional-integral controller is also used to automatically make thermal hydraulic systems reach desired steady state conditions. A point kinetics model is used to model reactor kinetics behavior with temperature reactivity feedback. The underlying large sparse linear systems in these models are efficiently solved by using direct and iterative solvers provided by the SuperLU code on high performance machines. Input interfaces are designed to increase the flexibility of simulation for complicated thermal hydraulic systems. In conclusion, this paper mainly focuses on the methodology used to develop the FANCY code, and safety analysis of the Mark 1 pebble-bed FHR under development at UCB is performed.« less

A major advance of tropical Andean glaciers during the Antarctic cold reversal.

PubMed

Jomelli, V; Favier, V; Vuille, M; Braucher, R; Martin, L; Blard, P-H; Colose, C; Brunstein, D; He, F; Khodri, M; Bourlès, D L; Leanni, L; Rinterknecht, V; Grancher, D; Francou, B; Ceballos, J L; Fonseca, H; Liu, Z; Otto-Bliesner, B L

2014-09-11

The Younger Dryas stadial, a cold event spanning 12,800 to 11,500 years ago, during the last deglaciation, is thought to coincide with the last major glacial re-advance in the tropical Andes. This interpretation relies mainly on cosmic-ray exposure dating of glacial deposits. Recent studies, however, have established new production rates for cosmogenic (10)Be and (3)He, which make it necessary to update all chronologies in this region and revise our understanding of cryospheric responses to climate variability. Here we present a new (10)Be moraine chronology in Colombia showing that glaciers in the northern tropical Andes expanded to a larger extent during the Antarctic cold reversal (14,500 to 12,900 years ago) than during the Younger Dryas. On the basis of a homogenized chronology of all (10)Be and (3)He moraine ages across the tropical Andes, we show that this behaviour was common to the northern and southern tropical Andes. Transient simulations with a coupled global climate model suggest that the common glacier behaviour was the result of Atlantic meridional overturning circulation variability superimposed on a deglacial increase in the atmospheric carbon dioxide concentration. During the Antarctic cold reversal, glaciers advanced primarily in response to cold sea surface temperatures over much of the Southern Hemisphere. During the Younger Dryas, however, northern tropical Andes glaciers retreated owing to abrupt regional warming in response to reduced precipitation and land-surface feedbacks triggered by a weakened Atlantic meridional overturning circulation. Conversely, glacier retreat during the Younger Dryas in the southern tropical Andes occurred as a result of progressive warming, probably influenced by an increase in atmospheric carbon dioxide. Considered with evidence from mid-latitude Andean glaciers, our results argue for a common glacier response to cold conditions in the Antarctic cold reversal exceeding that of the Younger Dryas.

A MODEL FOR FINE PARTICLE AGGLOMERATION IN CIRCULATING FLUIDIZED BED ABSORBERS

EPA Science Inventory

A model for fine particle agglomeration in circulating fluidized bed absorbers (CFBAS) has been developed. It can model the influence of different factors on agglomeration, such as the geometry of CFBAs, superficial gas velocity, initial particle size distribution, and type of ag...

Assimilation of TOPEX/POSEIDON Altimeter Data into a Global Ocean Circulation Model: Are the Results Any Good?

NASA Technical Reports Server (NTRS)

Fukumori, I.; Fu, L. L.; Chao, Y.

1998-01-01

The feasibility of assimilating satellite altimetry data into a global ocean general ocean general circulation model is studied. Three years of TOPEX/POSEIDON data is analyzed using a global, three-dimensional, nonlinear primitive equation model.

An advanced computational bioheat transfer model for a human body with an embedded systemic circulation.

PubMed

Coccarelli, Alberto; Boileau, Etienne; Parthimos, Dimitris; Nithiarasu, Perumal

2016-10-01

In the present work, an elaborate one-dimensional thermofluid model for a human body is presented. By contrast to the existing pure conduction-/perfusion-based models, the proposed methodology couples the arterial fluid dynamics of a human body with a multi-segmental bioheat model of surrounding solid tissues. In the present configuration, arterial flow is included through a network of elastic vessels. More than a dozen solid segments are employed to represent the heat conduction in the surrounding tissues, and each segment is constituted by a multilayered circular cylinder. Such multi-layers allow flexible delineation of the geometry and incorporation of properties of different tissue types. The coupling of solid tissue and fluid models requires subdivision of the arterial circulation into large and small arteries. The heat exchange between tissues and arterial wall occurs by convection in large vessels and by perfusion in small arteries. The core region, including the heart, provides the inlet conditions for the fluid equations. In the proposed model, shivering, sweating, and perfusion changes constitute the basis of the thermoregulatory system. The equations governing flow and heat transfer in the circulatory system are solved using a locally conservative Galerkin approach, and the heat conduction in the surrounding tissues is solved using a standard implicit backward Euler method. To investigate the effectiveness of the proposed model, temperature field evolutions are monitored at different points of the arterial tree and in the surrounding tissue layers. To study the differences due to flow-induced convection effects on thermal balance, the results of the current model are compared against those of the widely used modelling methodologies. The results show that the convection significantly influences the temperature distribution of the solid tissues in the vicinity of the arteries. Thus, the inner convection has a more predominant role in the human body heat balance than previously thought. To demonstrate its capabilities, the proposed new model is used to study different scenarios, including thermoregulation inactivity and variation in surrounding atmospheric conditions.

The influence of the tropics upon the prediction of the Southern Hemisphere circulation within the GLAS GCM. [Goddard Laboratory for Atmospheric Sciences General Circulation Model

NASA Technical Reports Server (NTRS)

Baker, W. E.; Paegle, J.

1983-01-01

An examination is undertaken of the sensitivity of short term Southern Hemisphere circulation prediction to tropical wind data and tropical latent heat release. The data assimilation experiments employ the Goddard Laboratory for Atmospheric Sciences' fourth-order general circulation model. Two of the experiments are identical, but for the fact that one uses tropical wind data while the other does not. A third experiment contains the identical initial conditions of forecasts with tropical winds, while suppressing tropical latent heat release.

Response of deciduous trees spring phenology to recent and projected climate change in Central Lithuania

NASA Astrophysics Data System (ADS)

Juknys, Romualdas; Kanapickas, Arvydas; Šveikauskaitė, Irma; Sujetovienė, Gintarė

2016-10-01

The analysis of long-term time series of spring phenology for different deciduous trees species has shown that leaf unfolding for all the investigated species is the most sensitive to temperatures in March and April and illustrates that forcing temperature is the main driver of the advancement of leaf unfolding. Available chilling amount has increased by 22.5 % over the last 90 years, indicating that in the investigated geographical region there is no threat of chilling shortage. The projection of climatic parameters for Central Lithuania on the basis of three global circulation models has shown that under the optimistic climate change scenario (RCP 2.6) the mean temperature tends to increase by 1.28 °C and under the pessimistic scenario (RCP 8.5) by 5.03 °C until the end of the current century. Recently, different statistical models are used not only to analyze but also to project the changes in spring phenology. Our study has shown that when the data of long-term phenological observations are available, multiple regression models are suitable for the projection of the advancement of leaf unfolding under the changing climate. According to the RCP 8.5 scenario, the projected advancement in leaf unfolding for early-season species birch consists of almost 15 days as an average of all three used GSMs. Markedly less response to the projected far future (2071-2100), climate change is foreseen for other investigated climax species: -9 days for lime, 10 days for oak, and 11 days for maple.

Response of deciduous trees spring phenology to recent and projected climate change in Central Lithuania.

PubMed

Juknys, Romualdas; Kanapickas, Arvydas; Šveikauskaitė, Irma; Sujetovienė, Gintarė

2016-10-01

The analysis of long-term time series of spring phenology for different deciduous trees species has shown that leaf unfolding for all the investigated species is the most sensitive to temperatures in March and April and illustrates that forcing temperature is the main driver of the advancement of leaf unfolding. Available chilling amount has increased by 22.5 % over the last 90 years, indicating that in the investigated geographical region there is no threat of chilling shortage. The projection of climatic parameters for Central Lithuania on the basis of three global circulation models has shown that under the optimistic climate change scenario (RCP 2.6) the mean temperature tends to increase by 1.28 °C and under the pessimistic scenario (RCP 8.5) by 5.03 °C until the end of the current century. Recently, different statistical models are used not only to analyze but also to project the changes in spring phenology. Our study has shown that when the data of long-term phenological observations are available, multiple regression models are suitable for the projection of the advancement of leaf unfolding under the changing climate. According to the RCP 8.5 scenario, the projected advancement in leaf unfolding for early-season species birch consists of almost 15 days as an average of all three used GSMs. Markedly less response to the projected far future (2071-2100), climate change is foreseen for other investigated climax species: -9 days for lime, 10 days for oak, and 11 days for maple.

Field estimates of groundwater circulation depths in two mountainous watersheds in the western U.S. and the effect of deep circulation on solute concentrations in streamflow

NASA Astrophysics Data System (ADS)

Frisbee, Marty D.; Tolley, Douglas G.; Wilson, John L.

2017-04-01

Estimates of groundwater circulation depths based on field data are lacking. These data are critical to inform and refine hydrogeologic models of mountainous watersheds, and to quantify depth and time dependencies of weathering processes in watersheds. Here we test two competing hypotheses on the role of geology and geologic setting in deep groundwater circulation and the role of deep groundwater in the geochemical evolution of streams and springs. We test these hypotheses in two mountainous watersheds that have distinctly different geologic settings (one crystalline, metamorphic bedrock and the other volcanic bedrock). Estimated circulation depths for springs in both watersheds range from 0.6 to 1.6 km and may be as great as 2.5 km. These estimated groundwater circulation depths are much deeper than commonly modeled depths suggesting that we may be forcing groundwater flow paths too shallow in models. In addition, the spatial relationships of groundwater circulation depths are different between the two watersheds. Groundwater circulation depths in the crystalline bedrock watershed increase with decreasing elevation indicative of topography-driven groundwater flow. This relationship is not present in the volcanic bedrock watershed suggesting that both the source of fracturing (tectonic versus volcanic) and increased primary porosity in the volcanic bedrock play a role in deep groundwater circulation. The results from the crystalline bedrock watershed also indicate that relatively deep groundwater circulation can occur at local scales in headwater drainages less than 9.0 km2 and at larger fractions than commonly perceived. Deep groundwater is a primary control on streamflow processes and solute concentrations in both watersheds.

Kalirin and CHD7: novel endothelial dysfunction indicators in circulating extracellular vesicles from hypertensive patients with albuminuria

PubMed Central

de la Cuesta, Fernando; Baldan-Martin, Montserrat; Moreno-Luna, Rafael; Alvarez-Llamas, Gloria; Gonzalez-Calero, Laura; Mourino-Alvarez, Laura; Sastre-Oliva, Tamara; López, Juan A.; Vázquez, Jesús; Ruiz-Hurtado, Gema; Segura, Julian; Vivanco, Fernando; Ruilope, Luis M.; Barderas, Maria G.

2017-01-01

Despite of the great advances in anti-hypertensive therapies, many patients under Renin-Angiotensin- System (RAS) suppression develop albuminuria, which is a clear indicator of therapeutic inefficiency. Hence, indicators of vascular function are needed to assess patients’ condition and help deciding future therapies. Proteomic analysis of circulating extracellular vesicles (EVs) showed two proteins, kalirin and chromodomain-helicase-DNA-binding protein 7 (CHD7), increased in albuminuric patients. A positive correlation of both with the expression of the endothelial activation marker E-selectin was found in EVs. In vitro analysis using TNFα-treated adult human endothelial cells proved their involvement in endothelial cell activation. Hence, we propose protein levels of kalirin and CHD7 in circulating EVs as novel endothelial dysfunction markers to monitor vascular condition in hypertensive patients with albuminuria. PMID:28152519

A Regression Study of Demand, Cost and Pricing Public Library Circulation Services.

ERIC Educational Resources Information Center

Stratton, Peter J.

This paper examines three aspects of the public library's circulation service: (1) a demand function for the service is estimated; (2) a long-run unit circulation cost curve is developed; and (3) using the economist's notion of "efficiency," a general model for the pricing of the circulation service is presented. The estimated demand…

Interannual Variability of the Patagonian Shelf Circulation and Cross-Shelf Exchange

NASA Astrophysics Data System (ADS)

Combes, V.; Matano, R. P.

2016-02-01

Observational studies have already established the general mean circulation and hydrographic characteristics of the Patagonian shelf waters using data from in situ observation, altimetry and more recently from the Aquarius satellite sea surface salinity, but the paucity of those data in time or below the surface leave us with an incomplete picture of the shelf circulation and of its variability. This study discusses the variability of the Patagonian central shelf circulation and off-shelf transport using a high-resolution model experiment for the period 1979-2012. The model solution shows high skill in reproducing the best-known aspects of the shelf and deep-ocean circulations. This study links the variability of the central shelf circulation and off-shelf transport to the wind variability, southern shelf transport variability and large-scale current variability. We find that while the inner and central shelf circulation are principally wind driven, the contribution of the Brazil/Malvinas Confluence (BMC) variability becomes important in the outer shelf and along the shelf break. The model also indicates that whereas the location of the off-shelf transport is controlled by the BMC, its variability is modulated by the southern shelf transport. The variability of the subtropical shelf front, where the fresh southern shelf waters encounters the saline northern shelf waters, is also presented in this study.

Ocean Circulation-Cloud Interactions Reduce the Pace of Transient Climate Change

NASA Astrophysics Data System (ADS)

Trossman, D.; Palter, J. B.; Merlis, T. M.; Huang, Y.; Xia, Y.

2016-12-01

We argue that a substantial fraction of the uncertainty in the cloud radiative feedback during transient climate change may be due to uncertainty in the ocean circulation perturbation. A suite of climate model simulations in which the ocean circulation, the cloud radiative feedback, or a combination of both are held fixed while CO2 doubles, shows that changes in the ocean circulation reduce the amount of transient global warming caused by the radiative cloud feedback. Specifically, a slowdown in the Atlantic Meridional Overturning Circulation (AMOC) helps to maintain low cloud cover in the Northern Hemisphere extratropics. We propose that the AMOC decline increases the meridional SST gradient, strengthening the storm track, its attendant clouds and the amount of shortwave radiation they reflect back to space. If the results of our model were to scale proportionately in the CMIP5 models, whose AMOC decline ranges from 15 to 60% under RCP8.5, then as much as 70% of the intermodel spread in the cloud radiative feedback and 35% of the spread in the transient climate response could possibly stem from the model representations of AMOC decline.

Technology and Microcomputers for an Information Centre/Special Library.

ERIC Educational Resources Information Center

Daehn, Ralph M.

1984-01-01

Discusses use of microcomputer hardware and software, telecommunications methods, and advanced library methods to create a specialized information center's database of literature relating to farm machinery and food processing. Systems and services (electronic messaging, serials control, database creation, cataloging, collections, circulation,…

Planning for Downtown Circulation Systems. Volume 3. Appendices.

DOT National Transportation Integrated Search

1983-10-01

This volume contains worksheets for estimating circulator patronage, costs, revenues and travel impacts, detailed discussions of estimation and application procedures for the demand models developed, and a case study of the models' application using ...

[Establishment and evaluation of extracorporeal circulation model in rats].

PubMed

Xie, Xiao-Jun; Tao, Kai-Yu; Tang, Meng-Lin; Du, Lei; An, Qi; Lin, Ke; Gan, Chang-Ping; Chen, You-Wen; Luo, Shu-Hua

2012-09-01

To establish an extracorporeal circulation (ECC) rat model, and evaluate the inflammatory response and organ injury induced in the model. SD rats were anesthetized and cannulated from right common carotid artery to left femoral vein to establish the bypass of extracorporeal circulation. Then the rats were randomly divided into ECC group and sham group. The rats in ECC group were subjected to extracorporeal circulation for 2 hours and then rest for 2 hours, while the rats in sham group were only observed for 4 hours without extracorporeal circulation. After that, blood routine examination, blood gas analysis, the measurement of pro-inflammatory factors in bronchoalveolar lavage fluid and lung tissue were performed to evaluate the lung injury induced by ECC. Circulating endothelial cells were also calculated by flow cytometry to assess the vascular endothelial injury. At 2 hours after ECC, red blood cell counts in both groups kept normal, while leukocyte and neutrophil counts, plasmatic tumor necrosis factor-a level and neutrophil elastase level, circulating endothelial cells in the rats of ECC group were significantly higher than those in sham group. Tumor necrosis factor-alpha in bronchoalveolar lavage fluid and water content in lung of the ECC rats were also significantly higher, while the oxygenation index was significantly lower. Neutrophil infiltration was also observed in lung tissues with increased thickness of alveolar membrane in ECC group. The ECC model established from right common carotid artery to left femoral vein in our study can successfully induce systemic inflammatory response, and acute lung injury associated with inflammation.

A numerical study of circulation in the Gulf of Riga, Baltic Sea. Part I: Whole-basin gyres and mean currents

NASA Astrophysics Data System (ADS)

Lips, Urmas; Zhurbas, Victor; Skudra, Maris; Väli, Germo

2016-01-01

A regional model of the Gulf of Riga (GoR) with horizontal grid spacing of 0.5 nautical miles was applied to study the features and driving forces of the whole-basin circulation in the GoR. The initial conditions and atmospheric forcing were taken from the operational models High Resolution Operational Model for the Baltic (HIROMB) and High Resolution Limited Area Model (HIRLAM), respectively. The wind stress curl is shown to be a major contributor to the whole-basin circulation pattern. An anticyclonic circulation pattern in the summer is determined by a combined effect of the negative wind stress curl, thermal density stratification and bottom topography. Positive values of the wind stress curl and a cyclonic circulation pattern prevail during the cold period of the year when seasonal thermocline is absent. During calm periods, the anticyclonic type of circulation is established due to a combined effect of the river runoff, saltier water inflow into and mixed water outflow from the GoR. Two seasonal baroclinic jet-like currents are identified in the summer: the Northward Longshore Current in the western GoR and Southward Subsurface Longshore Current in the eastern GoR. The alteration of the circulation pattern in the GoR from cyclonic in the cold period of the year to anticyclonic in the summer, and vice versa, was shown to be observed not every year due to inter-annual variability of wind forcing.

Predicting carotid artery disease and plaque instability from cell-derived microparticles.

PubMed

Wekesa, A L; Cross, K S; O'Donovan, O; Dowdall, J F; O'Brien, O; Doyle, M; Byrne, L; Phelan, J P; Ross, M D; Landers, R; Harrison, M

2014-11-01

Cell-derived microparticles (MPs) are small plasma membrane-derived vesicles shed from circulating blood cells and may act as novel biomarkers of vascular disease. We investigated the potential of circulating MPs to predict (a) carotid plaque instability and (b) the presence of advanced carotid disease. This pilot study recruited carotid disease patients (aged 69.3 ± 1.2 years [mean ± SD], 69% male, 90% symptomatic) undergoing endarterectomy (n = 42) and age- and sex-matched controls (n = 73). Plaques were classified as stable (n = 25) or unstable (n = 16) post surgery using immunohistochemistry. Blood samples were analysed for MP subsets and molecular biomarkers. Odds ratios (OR) are expressed per standard deviation biomarker increase. Endothelial MP (EMP) subsets, but not any vascular, inflammatory, or proteolytic molecular biomarker, were higher (p < .05) in the unstable than the stable plaque patients. The area under the receiver operator characteristic curve for CD31(+)41(-) EMP in discriminating an unstable plaque was 0.73 (0.56-0.90, p < .05). CD31(+)41(-) EMP predicted plaque instability (OR = 2.19, 1.08-4.46, p < .05) and remained significant in a multivariable model that included transient ischaemic attack symptom status. Annexin V(+) MP, platelet MP (PMP) subsets, and C-reactive protein were higher (p < .05) in cases than controls. Annexin V(+) MP (OR = 3.15, 1.49-6.68), soluble vascular cell adhesion molecule-1 (OR = 1.64, 1.03-2.59), and previous smoking history (OR = 3.82, 1.38-10.60) independently (p < .05) predicted the presence of carotid disease in a multivariable model. EMP may have utility in predicting plaque instability in carotid patients and annexin V(+) MPs may predict the presence of advanced carotid disease in aging populations, independent of established biomarkers. Copyright © 2014 European Society for Vascular Surgery. Published by Elsevier Ltd. All rights reserved.

Cloud-System Resolving Models: Status and Prospects

NASA Technical Reports Server (NTRS)

Tao, Wei-Kuo; Moncreiff, Mitch

2008-01-01

Cloud-system resolving models (CRM), which are based on the nonhydrostatic equations of motion and typically have a grid-spacing of about a kilometer, originated as cloud-process models in the 1970s. This paper reviews the status and prospects of CRMs across a wide range of issues, such as microphysics and precipitation; interaction between clouds and radiation; and the effects of boundary-layer and surface-processes on cloud systems. Since CRMs resolve organized convection, tropical waves and the large-scale circulation, there is the prospect for several advances in both basic knowledge of scale-interaction requisite to parameterizing mesoscale processes in climate models. In superparameterization, CRMs represent convection, explicitly replacing many of the assumptions necessary in contemporary parameterization. Global CRMs have been run on an experimental basis, giving prospect to a new generation of climate weather prediction in a decade, and climate models due course. CRMs play a major role in the retrieval of surface-rain and latent heating from satellite measurements. Finally, enormous wide dynamic ranges of CRM simulations present new challenges for model validation against observations.

IMPORTANCE OF MERIDIONAL CIRCULATION IN FLUX TRANSPORT DYNAMO: THE POSSIBILITY OF A MAUNDER-LIKE GRAND MINIMUM

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karak, Bidya Binay, E-mail: bidya_karak@physics.iisc.ernet.i

2010-12-01

Meridional circulation is an important ingredient in flux transport dynamo models. We have studied its importance on the period, the amplitude of the solar cycle, and also in producing Maunder-like grand minima in these models. First, we model the periods of the last 23 sunspot cycles by varying the meridional circulation speed. If the dynamo is in a diffusion-dominated regime, then we find that most of the cycle amplitudes also get modeled up to some extent when we model the periods. Next, we propose that at the beginning of the Maunder minimum the amplitude of meridional circulation dropped to amore » low value and then after a few years it increased again. Several independent studies also favor this assumption. With this assumption, a diffusion-dominated dynamo is able to reproduce many important features of the Maunder minimum remarkably well. If the dynamo is in a diffusion-dominated regime, then a slower meridional circulation means that the poloidal field gets more time to diffuse during its transport through the convection zone, making the dynamo weaker. This consequence helps to model both the cycle amplitudes and the Maunder-like minima. We, however, fail to reproduce these results if the dynamo is in an advection-dominated regime.« less

Seasonal dependence of the predictable low-level circulation patterns over the tropical Indo-Pacific domain

NASA Astrophysics Data System (ADS)

Zhang, Tuantuan; Huang, Bohua; Yang, Song; Laohalertchai, Charoon

2018-06-01

The seasonal dependence of the prediction skill of 850-hPa monthly zonal wind over the tropical Indo-Pacific domain is examined using the ensemble reforecasts for 1983-2010 from the National Centers for Environmental Prediction (NCEP) Climate Forecast System Reanalysis and Reforecast (CFSRR) project. According to a maximum signal-to-noise empirical orthogonal function analysis, the most predictable patterns of atmospheric low-level circulation are associated with the developing and maturing phases of El Niño-Southern Oscillation (ENSO). The CFSv2 is capable of predicting these ENSO-related patterns up to 9-months in advance for all months, except for May-June when the effect of the spring barrier is strong. The other predictable climate processes associated with the low-level atmospheric circulation are more seasonally dependent. For winter and spring, the second most predictable patterns are associated with the ENSO decaying phase. Within these seasons, the monthly evolution of the predictable patterns is characterized by a southward shift of westerly wind anomalies, generated by the interaction between the annual cycle and the ENSO signals (i.e., the combination-mode). In general, the CFSv2 hindcast well predicts these patterns at least 5 months in advance for spring, while shows much lower skills for winter months. In summer, the second predictable patterns are associated with the western North Pacific (WNP) monsoon (i.e., the WNP anticyclone/cyclone) in short leads while associated with ENSO in longer leads (after 4-month lead). The second predictable patterns in fall are mainly associated with tropical Indian Ocean Dipole, which can be predicted 3 months in advance.

The landscape of actionable genomic alterations in cell-free circulating tumor DNA from 21,807 advanced cancer patients.

PubMed

Zill, Oliver A; Banks, Kimberly C; Fairclough, Stephen R; Mortimer, Stefanie; Vowles, James V; Mokhtari, Reza; Gandara, David R; Mack, Philip C; Odegaard, Justin I; Nagy, Rebecca J; Baca, Arthur M; Eltoukhy, Helmy; Chudova, Darya I; Lanman, Richard B; Talasaz, AmirAli

2018-05-18

Cell-free DNA (cfDNA) sequencing provides a non-invasive method for obtaining actionable genomic information to guide personalized cancer treatment, but the presence of multiple alterations in circulation related to treatment and tumor heterogeneity complicate the interpretation of the observed variants. Experimental Design: We describe the somatic mutation landscape of 70 cancer genes from cfDNA deep-sequencing analysis of 21,807 patients with treated, late-stage cancers across >50 cancer types. To facilitate interpretation of the genomic complexity of circulating tumor DNA in advanced, treated cancer patients, we developed methods to identify cfDNA copy-number driver alterations and cfDNA clonality. Patterns and prevalence of cfDNA alterations in major driver genes for non-small cell lung, breast, and colorectal cancer largely recapitulated those from tumor tissue sequencing compendia (TCGA and COSMIC; r=0.90-0.99), with the principle differences in alteration prevalence being due to patient treatment. This highly sensitive cfDNA sequencing assay revealed numerous subclonal tumor-derived alterations, expected as a result of clonal evolution, but leading to an apparent departure from mutual exclusivity in treatment-naïve tumors. Upon applying novel cfDNA clonality and copy-number driver identification methods, robust mutual exclusivity was observed among predicted truncal driver cfDNA alterations (FDR=5x10 -7 for EGFR and ERBB2 ), in effect distinguishing tumor-initiating alterations from secondary alterations. Treatment-associated resistance, including both novel alterations and parallel evolution, was common in the cfDNA cohort and was enriched in patients with targetable driver alterations (>18.6% patients). Together these retrospective analyses of a large cfDNA sequencing data set reveal subclonal structures and emerging resistance in advanced solid tumors. Copyright ©2018, American Association for Cancer Research.

Zebrafish as an early stage screening tool to study the systemic circulation of nanoparticulate drug delivery systems in vivo.

PubMed

Sieber, Sandro; Grossen, Philip; Detampel, Pascal; Siegfried, Salome; Witzigmann, Dominik; Huwyler, Jörg

2017-10-28

Nanomedicines have gained much attention for the delivery of small molecules or nucleic acids as treatment options for many diseases. However, the transfer from experimental systems to in vivo applications remains a challenge since it is difficult to assess their circulation behavior in the body at an early stage of drug discovery. Thus, innovative and improved concepts are urgently needed to overcome this issue and to close the gap between empiric nanoparticle design, in vitro assessment, and first in vivo experiments using rodent animal models. This study was focused on the zebrafish as a vertebrate screening model to assess the circulation in blood and extravasation behavior of nanoparticulate drug delivery systems in vivo. To validate this novel approach, monodisperse preparations of fluorescently labeled liposomes with similar size and zeta potential were injected into transgenic zebrafish lines expressing green fluorescent protein in their vasculature. Phosphatidylcholine-based lipids differed by fatty acid chain length and saturation. Circulation behavior and vascular distribution pattern were evaluated qualitatively and semi-quantitatively using image analysis. Liposomes composed of lipids with lower transition temperature (<28°C) as well as PEGylated liposomes showed longer circulation times and extravasation. In contrast, liposomes composed of lipids with transition temperatures>28°C bound to venous parts of the vasculature. This circulation patterns in the zebrafish model did correlate with published and experimental pharmacokinetic data from mice and rats. Our findings indicate that the zebrafish model is a useful vertebrate screening tool for nanoparticulate drug delivery systems to predict their in vivo circulation behavior with respect to systemic circulation time and exposure. Copyright © 2017 Elsevier B.V. All rights reserved.

Maintenance of Summer Monsoon Circulations: A Planetary-Scale Perspective.

NASA Astrophysics Data System (ADS)

Chen, Tsing-Chang

2003-06-01

The monsoon circulation, which is generally considered to be driven by the landmass-ocean thermal contrast, like a gigantic land-sea breeze circulation, exhibits a phase reversal in its vertical structure; a monsoon high aloft over a continental thermal low is juxtaposed with a midoceanic trough underlaid by an oceanic anticyclone. This classic monsoon circulation model is well matched by the monsoon circulation depicted with the observational data prior to the First Global Atmospheric Research Program (GARP) Global Experiment (FGGE). However, synthesizing findings of the global circulation portrayed with the post-FGGE data, it was found that some basic features of major monsoon circulations in Asia, North America, South America, and Australia differ from those of the classic monsoon circulation model. Therefore, a revision of the classic monsoon theory is suggested. With four different wave regimes selected to fit the horizontal dimensions of these monsoon circulations, basic features common to all four major monsoons are illustrated in terms of diagnostic analyses of the velocity potential maintenance equation (which relates diabatic heating and velocity potential) and the streamfunction budget (which links velocity potential and streamfunction) in these wave regimes. It is shown that a monsoon circulation is actually driven by the east-west differential heating and maintained dynamically by a balance between a vorticity source and advection. This dynamic balance is reflected by a spatial quadrature relationship between the monsoon divergent circulation and the monsoon high (low) at upper (lower) levels.

Identifying a key physical factor sensitive to the performance of Madden-Julian oscillation simulation in climate models

NASA Astrophysics Data System (ADS)

Kim, Go-Un; Seo, Kyong-Hwan

2018-01-01

A key physical factor in regulating the performance of Madden-Julian oscillation (MJO) simulation is examined by using 26 climate model simulations from the World Meteorological Organization's Working Group for Numerical Experimentation/Global Energy and Water Cycle Experiment Atmospheric System Study (WGNE and MJO-Task Force/GASS) global model comparison project. For this, intraseasonal moisture budget equation is analyzed and a simple, efficient physical quantity is developed. The result shows that MJO skill is most sensitive to vertically integrated intraseasonal zonal wind convergence (ZC). In particular, a specific threshold value of the strength of the ZC can be used as distinguishing between good and poor models. An additional finding is that good models exhibit the correct simultaneous convection and large-scale circulation phase relationship. In poor models, however, the peak circulation response appears 3 days after peak rainfall, suggesting unfavorable coupling between convection and circulation. For an improving simulation of the MJO in climate models, we propose that this delay of circulation in response to convection needs to be corrected in the cumulus parameterization scheme.

PARTICLE FLOW, MIXING, AND CHEMICAL REACTION IN CIRCULATING FLUIDIZED BED ABSORBERS

EPA Science Inventory

A mixing model has been developed to simulate the particle residence time distribution (RTD) in a circulating fluidized bed absorber (CFBA). Also, a gas/solid reaction model for sulfur dioxide (SO2) removal by lime has been developed. For the reaction model that considers RTD dis...

Documentation of the GLAS fourth order general circulation model. Volume 1: Model documentation

NASA Technical Reports Server (NTRS)

Kalnay, E.; Balgovind, R.; Chao, W.; Edelmann, J.; Pfaendtner, J.; Takacs, L.; Takano, K.

1983-01-01

The volume 1, of a 3 volume technical memoranda which contains a documentation of the GLAS Fourth Order General Circulation Model is presented. Volume 1 contains the documentation, description of the stratospheric/tropospheric extension, user's guide, climatological boundary data, and some climate simulation studies.

Toward Better Intraseasonal and Seasonal Prediction: Verification and Evaluation of the NOGAPS Model Forecasts

DTIC Science & Technology

2013-09-30

Circulation (HC) in terms of the meridional streamfunction. The interannual variability of the Atlantic HC in boreal summer was examined using the EOF...large-scale circulations in the NAVGEM model and the source of predictability for the seasonal variation of the Atlantic TCs. We have been working...EOF analysis of Meridional Circulation (JAS). (a) The leading mode (M1); (b) variance explained by the first 10 modes. 9

Dynamical Evaluation of Ocean Models using the Gulf Stream as an Example

DTIC Science & Technology

2010-01-01

transport for the Atlantic meridional overturning circulation (AMOC) as the 3 nonlinear solutions discussed in Section 2. The model boundary is...Hellerman and Rosenstein (1983) wind stress climatology and the northward upper ocean flow (14 Sv) of the Atlantic meridional overturning circulation ... overturning circulation (AMOC) streamfunction with a 5 Sv contour interval from (a) 1/12° Atlantic MICOM, (b) 1/12° Atlantic HYCOM, and (c) 1/12

Salinity Boundary Conditions and the Atlantic Meridional Overturning Circulation in Depth and Quasi-Isopycnic Coordinate Global Ocean Models

DTIC Science & Technology

2009-06-30

Atlantic Meridional Overturning Circulation in Depth and Quasi-Isopycnic Coordinate Global Ocean...2009 4. TITLE AND SUBTITLE Salinity Boundary Conditions and the Atlantic Meridional Overturning Circulation in Depth and Quasi-Isopycnic Coordinate... Atlantic Meridional Overturning Circulation (AMOC) in global simulations performed with the depth coordinate Parallel Ocean Program (POP) ocean

A Simple Diagnostic Model of the Circulation Beneath an Ice Shelf

NASA Astrophysics Data System (ADS)

Jenkins, Adrian; Nøst, Ole Anders

2017-04-01

The ocean circulation beneath ice shelves supplies the heat required to melt ice and exports the resulting freshwater. It therefore plays a key role in determining the mass balance and geometry of the ice shelves and hence the restraint they impose on the outflow of grounded ice from the interior of the ice sheet. Despite this critical role in regulating the ice sheet's contribution to eustatic sea level, an understanding of some of the most basic features of the circulation is lacking. The conventional paradigm is one of a buoyancy-forced overturning circulation, with inflow of warm, salty water along the seabed and outflow of cooled and freshened waters along the ice base. However, most sub-ice-shelf cavities are broad relative to the internal Rossby radius, so a horizontal circulation accompanies the overturning. Primitive equation ocean models applied to idealised geometries produce cyclonic gyres of comparable magnitude, but in the absence of a theoretical understanding of what controls the gyre strength, those solutions can only be validated against each other. Furthermore, we have no understanding of how the gyre circulation should change given more complex geometries. To begin to address this gap in our theoretical understanding we present a simple, linear, steady-state model for the circulation beneath an ice shelf. Our approach in analogous to that of Stommel's classic analysis of the wind-driven gyres, but is complicated by the fact that his most basic assumption of homogeneity is inappropriate. The only forcing on the flow beneath an ice shelf arises because of the horizontal density gradients set up by melting. We thus arrive at a diagnostic model which gives us the depth-dependent horizontal circulation that results from an imposed geometry and density distribution. We describe the development of the model and present some preliminary solutions for the simplest cavity geometries.

Quantifying predictability variations in a low-order ocean-atmosphere model - A dynamical systems approach

NASA Technical Reports Server (NTRS)

Nese, Jon M.; Dutton, John A.

1993-01-01

The predictability of the weather and climatic states of a low-order moist general circulation model is quantified using a dynamic systems approach, and the effect of incorporating a simple oceanic circulation on predictability is evaluated. The predictability and the structure of the model attractors are compared using Liapunov exponents, local divergence rates, and the correlation and Liapunov dimensions. It was found that the activation of oceanic circulation increases the average error doubling time of the atmosphere and the coupled ocean-atmosphere system by 10 percent and decreases the variance of the largest local divergence rate by 20 percent. When an oceanic circulation develops, the average predictability of annually averaged states is improved by 25 percent and the variance of the largest local divergence rate decreases by 25 percent.

Early circulating tumor DNA dynamics and clonal selection with palbociclib and fulvestrant for breast cancer.

PubMed

O'Leary, Ben; Hrebien, Sarah; Morden, James P; Beaney, Matthew; Fribbens, Charlotte; Huang, Xin; Liu, Yuan; Bartlett, Cynthia Huang; Koehler, Maria; Cristofanilli, Massimo; Garcia-Murillas, Isaac; Bliss, Judith M; Turner, Nicholas C

2018-03-01

CDK4/6 inhibition substantially improves progression-free survival (PFS) for women with advanced estrogen receptor-positive breast cancer, although there are no predictive biomarkers. Early changes in circulating tumor DNA (ctDNA) level may provide early response prediction, but the impact of tumor heterogeneity is unknown. Here we use plasma samples from patients in the randomized phase III PALOMA-3 study of CDK4/6 inhibitor palbociclib and fulvestrant for women with advanced breast cancer and show that relative change in PIK3CA ctDNA level after 15 days treatment strongly predicts PFS on palbociclib and fulvestrant (hazard ratio 3.94, log-rank p = 0.0013). ESR1 mutations selected by prior hormone therapy are shown to be frequently sub clonal, with ESR1 ctDNA dynamics offering limited prediction of clinical outcome. These results suggest that early ctDNA dynamics may provide a robust biomarker for CDK4/6 inhibitors, with early ctDNA dynamics demonstrating divergent response of tumor sub clones to treatment.

Dynamical systems proxies of atmospheric predictability and mid-latitude extremes

NASA Astrophysics Data System (ADS)

Messori, Gabriele; Faranda, Davide; Caballero, Rodrigo; Yiou, Pascal

2017-04-01

Extreme weather ocurrences carry enormous social and economic costs and routinely garner widespread scientific and media coverage. Many extremes (for e.g. storms, heatwaves, cold spells, heavy precipitation) are tied to specific patterns of midlatitude atmospheric circulation. The ability to identify these patterns and use them to enhance the predictability of the extremes is therefore a topic of crucial societal and economic value. We propose a novel predictability pathway for extreme events, by building upon recent advances in dynamical systems theory. We use two simple dynamical systems metrics - local dimension and persistence - to identify sets of similar large-scale atmospheric flow patterns which present a coherent temporal evolution. When these patterns correspond to weather extremes, they therefore afford a particularly good forward predictability. We specifically test this technique on European winter temperatures, whose variability largely depends on the atmospheric circulation in the North Atlantic region. We find that our dynamical systems approach provides predictability of large-scale temperature extremes up to one week in advance.

A Babcock-Leighton solar dynamo model with multi-cellular meridional circulation in advection- and diffusion-dominated regimes

NASA Astrophysics Data System (ADS)

Belucz, B.; Dikpati, M.; Forgacs-Dajka, E.

2014-12-01

Babcock-Leighton type solar dynamo models with single cell meridional circulation are successful in reproducing many solarcycle features, and recently such a model was applied for solarcycle 24 amplitude prediction. It seems that cycle 24 amplitudeforecast may not be validated. One of the reasons is the assumption of a single cell meridional circulation. Recent observations andtheoretical models of meridional circulation do not indicate a single-celledflow pattern. So it is nessecary to examine the role of complexmulti-cellular circulation patterns in a Babcock-Leighton solar dynamo model in the advection and diffusion dominated regimes.By simulating a Babcock-Leighton solar dynamo model with multi-cellularflow, we show that the presence of a weak, second, high-latitudereverse cell speeds up the cycle and slighty enhances the poleward branch in the butterfly diagram, whereas the presence of a second cellin depth reverses the tilt of the butterfly wing and leads to ananti-solar type feature. If, instead, the butterfly diagram isconstructed from the middle of the convection zone in that case, a solar-like pattern can be retrieved. All the above cases behavequalitatively similar in advection and diffusion-dominated regimes.However, our dynamo with a meridional circulation containing fourcells in latitude behaves distinctly different in the two regimes, producing a solar-like butterfly diagram with fast cycles indiffusion-dominated regime, and a complex branches in the butterflydiagram in the advection-dominated regime. Another interestingfinding from our studies is that a four-celled flow pattern containing two in radius and two in latitude always producesquadrupolar parity as the relaxed solution.

Detection of circulating Bmi-1 mRNA in plasma and its potential diagnostic and prognostic value for uterine cervical cancer.

PubMed

Zhang, Xin; Wang, Chuanxin; Wang, Lili; Du, Lutao; Wang, Shun; Zheng, Guixi; Li, Wei; Zhuang, Xuewei; Zhang, Xuhua; Dong, Zhaogang

2012-07-01

Bmi-1 is overexpressed in uterine cervical cancer (UCC) and is found to be associated with adverse clinical characteristics and poor prognosis. However, little information is available on the status of circulating Bmi-1 mRNA in UCC. Because circulating cell-free nucleic acids have emerged as a novel class of markers for cancer detection, our research aims to address this question by detecting the circulating Bmi-1 mRNA and to assess its diagnostic and prognostic potential in UCC. Reverse transcription quantitative real-time PCR method was established to detect the circulating Bmi-1 mRNA in plasma of 109 patients with UCC, 138 patients with cervical intraepithelial neoplasia (CIN) and 80 healthy volunteers, and found that it was significantly increased in UCC compared with CINs and healthy controls (all at p < 0.001). Moreover, its high level was significantly correlated with advanced clinical stage (p < 0.001) and positive lymph nodes metastasis (p = 0.002). The area under the receiver operating characteristic curve (AUC) was 0.881, and the optimal cut-off value was 0.057, providing a sensitivity of 69.7% and a specificity of 95.9%. The AUC for circulating Bmi-1 mRNA showed higher diagnosis capability than that for SCC-Ag (p = 0.035) or CA125 (p < 0.001) currently utilized. Kaplan-Meier analysis demonstrated a correlation between increased circulating Bmi-1 mRNA level and reduced disease-free survival (DFS) (p = 0.001) and overall survival (OS) (p = 0.015). And, Cox analysis indicated that it was an independent prognostic factor for DFS and OS. We conclude that circulating Bmi-1 mRNA may be a potential noninvasive molecular marker for diagnosis and prognosis of UCC. Copyright © 2011 UICC.

The impact of climatological model biases in the North Atlantic jet on predicted future circulation change

NASA Astrophysics Data System (ADS)

Simpson, I.

2015-12-01

A long standing bias among global climate models (GCMs) is their incorrect representation of the wintertime circulation of the North Atlantic region. Specifically models tend to exhibit a North Atlantic jet (and associated storm track) that is too zonal, extending across central Europe, when it should tilt northward toward Scandinavia. GCM's consistently predict substantial changes in the large scale circulation in this region, consisting of a localized anti-cyclonic circulation, centered over the Mediterranean and accompanied by increased aridity there and increased storminess over Northern Europe.Here, we present preliminary results from experiments that are designed to address the question of what the impact of the climatological circulation biases might be on this predicted future response. Climate change experiments will be compared in two versions of the Community Earth System Model: the first is a free running version of the model, as typically used in climate prediction; the second is a bias corrected version of the model in which a seasonally varying cycle of bias correction tendencies are applied to the wind and temperature fields. These bias correction tendencies are designed to account for deficiencies in the fast parameterized processes, with an aim to push the model toward a more realistic climatology.While these experiments come with the caveat that they assume the bias correction tendencies will remain constant with time, they allow for an initial assessment, through controlled experiments, of the impact that biases in the climatological circulation can have on future predictions in this region. They will also motivate future work that can make use of the bias correction tendencies to understand the underlying physical processes responsible for the incorrect tilt of the jet.

Predictability of the Ningaloo Niño/Niña

PubMed Central

Doi, Takeshi; Behera, Swadhin K.; Yamagata, Toshio

2013-01-01

The seasonal prediction of the coastal oceanic warm event off West Australia, recently named the Ningaloo Niño, is explored by use of a state-of-the-art ocean-atmosphere coupled general circulation model. The Ningaloo Niño/Niña, which generally matures in austral summer, is found to be predictable two seasons ahead. In particular, the unprecedented extreme warm event in February 2011 was successfully predicted 9 months in advance. The successful prediction of the Ningaloo Niño is mainly due to the high prediction skill of La Niña in the Pacific. However, the model deficiency to underestimate its early evolution and peak amplitude needs to be improved. Since the Ningaloo Niño/Niña has potential impacts on regional societies and industries through extreme events, the present success of its prediction may encourage development of its early warning system. PMID:24100593

Modeling infectious disease dynamics in the complex landscape of global health.

PubMed

Heesterbeek, Hans; Anderson, Roy M; Andreasen, Viggo; Bansal, Shweta; De Angelis, Daniela; Dye, Chris; Eames, Ken T D; Edmunds, W John; Frost, Simon D W; Funk, Sebastian; Hollingsworth, T Deirdre; House, Thomas; Isham, Valerie; Klepac, Petra; Lessler, Justin; Lloyd-Smith, James O; Metcalf, C Jessica E; Mollison, Denis; Pellis, Lorenzo; Pulliam, Juliet R C; Roberts, Mick G; Viboud, Cecile

2015-03-13

Despite some notable successes in the control of infectious diseases, transmissible pathogens still pose an enormous threat to human and animal health. The ecological and evolutionary dynamics of infections play out on a wide range of interconnected temporal, organizational, and spatial scales, which span hours to months, cells to ecosystems, and local to global spread. Moreover, some pathogens are directly transmitted between individuals of a single species, whereas others circulate among multiple hosts, need arthropod vectors, or can survive in environmental reservoirs. Many factors, including increasing antimicrobial resistance, increased human connectivity and changeable human behavior, elevate prevention and control from matters of national policy to international challenge. In the face of this complexity, mathematical models offer valuable tools for synthesizing information to understand epidemiological patterns, and for developing quantitative evidence for decision-making in global health. Copyright © 2015, American Association for the Advancement of Science.

Computer Simulation of the Circulation Subsystem of a Library

ERIC Educational Resources Information Center

Shaw, W. M., Jr.

1975-01-01

When circulation data are used as input parameters for a computer simulation of a library's circulation subsystem, the results of the simulation provide information on book availability and delays. The model may be used to simulate alternative loan policies. (Author/LS)

Residual estuarine circulation in the Mandovi, a monsoonal estuary: A three-dimensional model study

NASA Astrophysics Data System (ADS)

Vijith, V.; Shetye, S. R.; Baetens, K.; Luyten, P.; Michael, G. S.

2016-05-01

Observations in the Mandovi estuary, located on the central west coast of India, have shown that the salinity field in this estuary is remarkably time-dependent and passes through all possible states of stratification (riverine, highly-stratified, partially-mixed and well-mixed) during a year as the runoff into the estuary varies from high values (∼1000 m3 s-1) in the wet season to negligible values (∼1 m3 s-1) at end of the dry season. The time-dependence is forced by the Indian Summer Monsoon (ISM) and hence the estuary is referred to as a monsoonal estuary. In this paper, we use a three-dimensional, open source, hydrodynamic, numerical model to reproduce the observed annual salinity field in the Mandovi. We then analyse the model results to define characteristics of residual estuarine circulation in the Mandovi. Our motivation to study this aspect of the Mandovi's dynamics is derived from the following three considerations. First, residual circulation is important to long-term evolution of an estuary; second, we need to understand how this circulation responds to strongly time-dependent runoff forcing experienced by a monsoonal estuary; and third, Mandovi is among the best studied estuaries that come under the influence of ISM, and has observations that can be used to validate the model. Our analysis shows that the residual estuarine circulation in the Mandovi shows four distinct phases during a year: a river like flow that is oriented downstream throughout the estuary; a salt-wedge type circulation, with flow into the estuary near the bottom and out of the estuary near the surface restricted close to the mouth of the estuary; circulation associated with a partially-mixed estuary; and, the circulation associated with a well-mixed estuary. Dimensional analysis of the field of residual circulation helped us to establish the link between strength of residual circulation at a location and magnitude of river runoff and rate of mixing at the location. We then derive an analytical expression that approximates exchange velocity (bottom velocity minus near freshwater velocity at a location) as a function of freshwater velocity and rate of mixing.

Flow Control Research at NASA Langley in Support of High-Lift Augmentation

NASA Technical Reports Server (NTRS)

Sellers, William L., III; Jones, Gregory S.; Moore, Mark D.

2002-01-01

The paper describes the efforts at NASA Langley to apply active and passive flow control techniques for improved high-lift systems, and advanced vehicle concepts utilizing powered high-lift techniques. The development of simplified high-lift systems utilizing active flow control is shown to provide significant weight and drag reduction benefits based on system studies. Active flow control that focuses on separation, and the development of advanced circulation control wings (CCW) utilizing unsteady excitation techniques will be discussed. The advanced CCW airfoils can provide multifunctional controls throughout the flight envelope. Computational and experimental data are shown to illustrate the benefits and issues with implementation of the technology.

A Joint Model for the Kinetics of CTC Count and PSA Concentration During Treatment in Metastatic Castration-Resistant Prostate Cancer*

PubMed Central

Wilbaux, M; Tod, M; De Bono, J; Lorente, D; Mateo, J; Freyer, G; You, B; Hénin, E

2015-01-01

Assessment of treatment efficacy in metastatic castration-resistant prostate cancer (mCRPC) is limited by frequent nonmeasurable bone metastases. The count of circulating tumor cells (CTCs) is a promising surrogate marker that may replace the widely used prostate-specific antigen (PSA). The purpose of this study was to quantify the dynamic relationships between the longitudinal kinetics of these markers during treatment in patients with mCRPC. Data from 223 patients with mCRPC treated by chemotherapy and/or hormonotherapy were analyzed for up to 6 months of treatment. A semimechanistic model was built, combining the following several pharmacometric advanced features: (1) Kinetic-Pharmacodynamic (K-PD) compartments for treatments (chemotherapy and hormonotherapy); (2) a latent variable linking both marker kinetics; (3) modeling of CTC kinetics with a cell lifespan model; and (4) a negative binomial distribution for the CTC random sampling. Linked with survival, this model would potentially be useful for predicting treatment efficacy during drug development or for therapeutic adjustment in treated patients. PMID:26225253

Liquid biopsy for lung cancer early detection.

PubMed

Santarpia, Mariacarmela; Liguori, Alessia; D'Aveni, Alessandro; Karachaliou, Niki; Gonzalez-Cao, Maria; Daffinà, Maria Grazia; Lazzari, Chiara; Altavilla, Giuseppe; Rosell, Rafael

2018-04-01

Molecularly targeted therapies and immune checkpoint inhibitors have markedly improved the therapeutic management of advanced lung cancer. However, it still remains the leading cause of cancer-related mortality worldwide, with disease stage at diagnosis representing the main prognostic factor. Detection of lung cancer at an earlier stage of disease, potentially susceptible of curative resection, can be critical to improve patients survival. Low-dose computed tomography (LDCT) screening of high-risk patients has been demonstrated to reduce mortality from lung cancer, but can be also associated with high false-positive rate, thus often resulting in unnecessary interventions for patients. Novel sensitive and specific biomarkers for identification of high-risk subjects and early detection that can be used alternatively and/or complement current routine diagnostic procedures are needed. Liquid biopsy has recently demonstrated its clinical usefulness in advanced NSCLC as a surrogate of tissue biopsy for noninvasive assessment of specific genomic alterations, thereby providing prognostic and predictive information. Different biosources from liquid biopsy, including cell free circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), exosomes and tumor-educated platelets (TEPs), have also been widely investigated for their potential role in lung cancer diagnosis. This review will provide an overview on the circulating biomarkers being evaluated for lung cancer detection, mainly focusing on results from most recent studies, the techniques developed to perform their assessment in blood and other biologic fluids and challenges in their clinical applications.

Liquid biopsy for lung cancer early detection

PubMed Central

Liguori, Alessia; D’Aveni, Alessandro; Karachaliou, Niki; Gonzalez-Cao, Maria; Daffinà, Maria Grazia; Lazzari, Chiara; Altavilla, Giuseppe; Rosell, Rafael

2018-01-01

Molecularly targeted therapies and immune checkpoint inhibitors have markedly improved the therapeutic management of advanced lung cancer. However, it still remains the leading cause of cancer-related mortality worldwide, with disease stage at diagnosis representing the main prognostic factor. Detection of lung cancer at an earlier stage of disease, potentially susceptible of curative resection, can be critical to improve patients survival. Low-dose computed tomography (LDCT) screening of high-risk patients has been demonstrated to reduce mortality from lung cancer, but can be also associated with high false-positive rate, thus often resulting in unnecessary interventions for patients. Novel sensitive and specific biomarkers for identification of high-risk subjects and early detection that can be used alternatively and/or complement current routine diagnostic procedures are needed. Liquid biopsy has recently demonstrated its clinical usefulness in advanced NSCLC as a surrogate of tissue biopsy for noninvasive assessment of specific genomic alterations, thereby providing prognostic and predictive information. Different biosources from liquid biopsy, including cell free circulating tumor DNA (ctDNA), circulating tumor cells (CTCs), exosomes and tumor-educated platelets (TEPs), have also been widely investigated for their potential role in lung cancer diagnosis. This review will provide an overview on the circulating biomarkers being evaluated for lung cancer detection, mainly focusing on results from most recent studies, the techniques developed to perform their assessment in blood and other biologic fluids and challenges in their clinical applications. PMID:29780635

Numerical Investigation of the Middle Atlantic Bight Shelfbreak Frontal Circulation Using a High-Resolution Ocean Hindcast Model

DTIC Science & Technology

2010-05-01

circulation from December 2003 to June 2008 . The model is driven by tidal harmonics, realistic atmospheric forcing, and dynamically consistent initial and open...important element of the regional circulation (He and Wilkin 2006). We applied the method of Mellor and Yamada (1982) to compute vertical turbulent...shelfbreak ROMS hindcast ran continuously from December 2003 through January 2008 . Initial conditions were taken from the MABGOM ROMS simulation on 1

Risk mapping of West Nile virus circulation in Spain, 2015.

PubMed

Sánchez-Gómez, Amaya; Amela, Carmen; Fernández-Carrión, Eduardo; Martínez-Avilés, Marta; Sánchez-Vizcaíno, José Manuel; Sierra-Moros, María José

2017-05-01

West Nile fever is an emergent disease in Europe. The objective of this study was to conduct a predictive risk mapping of West Nile Virus (WNV) circulation in Spain based on historical data of WNV circulation. Areas of Spain with evidence of WNV circulation were mapped based on data from notifications to the surveillance systems and a literature review. A logistic regression-based spatial model was used to assess the probability of WNV circulation. Data were analyzed at municipality level. Mean temperatures of the period from June to October, presence of wetlands and presence of Special Protection Areas for birds were considered as potential predictors. Two predictors of WNV circulation were identified: higher temperature [adjusted odds ratio (AOR) 2.07, 95% CI 1.82-2.35, p<0.01] and presence of wetlands (3.37, 95% CI 1.89-5.99, p<0.01). Model validations indicated good predictions: area under the ROC curve was 0.895 (95% CI 0.870-0.919) for internal validation and 0.895 (95% CI 0.840-0.951) for external validation. This model could support improvements of WNV risk- based surveillance in Spain. The importance of a comprehensive surveillance for WNF, including human, animal and potential vectors is highlighted, which could additionally result in model refinements. Copyright © 2017 Elsevier B.V. All rights reserved.

Deep water characteristics and circulation in the South China Sea

NASA Astrophysics Data System (ADS)

Wang, Aimei; Du, Yan; Peng, Shiqiu; Liu, Kexiu; Huang, Rui Xin

2018-04-01

This study investigates the deep circulation in the South China Sea (SCS) using oceanographic observations combined with results from a bottom layer reduced gravity model. The SCS water, 2000 m below the surface, is quite different from that in the adjacent Pacific Ocean, and it is characterized by its low dissolved oxygen (DO), high temperature and low salinity. The horizontal distribution of deep water properties indicates a basin-scale cyclonic circulation driven by the Luzon overflow. The results of the bottom layer reduced gravity model are consistent with the existence of the cyclonic circulation in the deep SCS. The circulation is stronger at the northern/western boundary. After overflowing the sill of the Luzon Strait, the deep water moves broadly southwestward, constrained by the 3500 m isobath. The broadening of the southward flow is induced by the downwelling velocity in the interior of the deep basin. The main deep circulation bifurcates into two branches after the Zhongsha Islands. The southward branch continues flowing along the 3500 m isobath, and the eastward branch forms the sub-basin scale cyclonic circulation around the seamounts in the central deep SCS. The returning flow along the east boundary is fairly weak. The numerical experiments of the bottom layer reduced gravity model reveal the important roles of topography, bottom friction, and the upwelling/downwelling pattern in controlling the spatial structure, particularly the strong, deep western boundary current.

Circulating DNA and its methylation level in inflammatory bowel disease and related colon cancer.

PubMed

Bai, Xuming; Zhu, Yaqun; Pu, Wangyang; Xiao, Li; Li, Kai; Xing, Chungen; Jin, Yong

2015-01-01

Both of chronic inflammation and abnormal immune in inflammatory bowel disease can induce colon cancer. Previous research showed that cell apoptosis and necrosis become the main source of circulating DNA in the peripheral blood during tumorigenesis that reduced along with methylation degree. However, its role in the process of colitis transforming to colon cancer is not clarified. Drinking 3% DSS was used to establish colitis model, while 3% dextran sodium sulfate (DSS) combined with azo oxidation methane (AOM) intraperitoneal injection was applied to establish colitis related colon cancer model. Circulating DNA and its methylation level in peripheral blood were tested. Morphology observation, HE staining, and p53 and β-catenin expression detection confirmed that drinking 3% DSS and 3% DSS combined with AOM intraperitoneal injection can successfully establish colitis and colitis associated colorectal cancer models. Circulating DNA level in colitis and colon cancer mice increased by gradient compared with control, while significant difference was observed between each other. Circulating DNA methylation level decreased obviously in colitis and colon cancer, and significant difference was observed between each other. Abnormal protein expression, circulating DNA and its methylation level in ulcerative colitis associated colorectal tissues change in gradient, suggesting that circulating DNA and its methylation level can be treated as new markers for colitis cancer transformation that has certain significance to explore the mechanism of human ulcerative colitis canceration.

ADCIRC: An Advanced Three-Dimensional Circulation Model for Shelves, Coasts, and Estuaries. Report 5. A Tropical Storm Database for the East and Gulf of Mexico Coasts of the United States.

DTIC Science & Technology

1994-08-01

paring the output of 134 events to observed data at hundreds of locations was beyond the scope, in both time and cost , of this project. However, as...40.054 40.054 4056 40.0554-.64 40.0% 4.054 -. 0544-.0574-.057 -0.057 _C0111 -0.03B 4.0590.059 40.059 40.0ŝ -L.05 - cost 4.0540.059 40.4p-4.09 -0.059...B28 Appnchx B Historc Stiom Event Tr~dks HURRICANE 241 NOT NAMED 9/16/1920 ඣ 90 e4 Appenix B Historic Slo"m Evnt Tracks B29 HURRICANE 219 NOT NAMED

Exploring Secondary Students' Epistemological Features Depending on the Evaluation Levels of the Group Model on Blood Circulation

ERIC Educational Resources Information Center

Lee, Shinyoung; Kim, Heui-Baik

2014-01-01

The purpose of this study is to identify the epistemological features and model qualities depending on model evaluation levels and to explore the reasoning process behind high-level evaluation through small group interaction about blood circulation. Nine groups of three to four students in the eighth grade participated in the modeling practice.…

A Signal to Noise Paradox in Climate Predictions

NASA Astrophysics Data System (ADS)

Eade, R.; Scaife, A. A.; Smith, D.; Dunstone, N. J.; MacLachlan, C.; Hermanson, L.; Ruth, C.

2017-12-01

Recent advances in climate modelling have resulted in the achievement of skilful long-range prediction, particular that associated with the winter circulation over the north Atlantic (e.g. Scaife et al 2014, Stockdale et al 2015, Dunstone et al 2016) including impacts over Europe and North America, and further afield. However, while highly significant and potentially useful skill exists, the signal-to-noise ratio of the ensemble mean to total variability in these ensemble predictions is anomalously small (Scaife et al 2014) and the correlation between the ensemble mean and historical observations exceeds the proportion of predictable variance in the ensemble (Eade et al 2014). This means the real world is more predictable than our climate models. Here we discuss a series of hypothesis tests that have been carried out to assess issues with model mechanisms compared to the observed world, and present the latest findings in our attempt to determine the cause of the anomalously weak predicted signals in our seasonal-to-decadal hindcasts.

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model.

PubMed

Hellweger, Ferdi L; van Sebille, Erik; Fredrick, Neil D

2014-09-12

A key question in ecology and evolution is the relative role of natural selection and neutral evolution in producing biogeographic patterns. We quantify the role of neutral processes by simulating division, mutation, and death of 100,000 individual marine bacteria cells with full 1 million-base-pair genomes in a global surface ocean circulation model. The model is run for up to 100,000 years and output is analyzed using BLAST (Basic Local Alignment Search Tool) alignment and metagenomics fragment recruitment. Simulations show the production and maintenance of biogeographic patterns, characterized by distinct provinces subject to mixing and periodic takeovers by neighbors (coalescence), after which neutral evolution reestablishes the province and the patterns reorganize. The emergent patterns are substantial (e.g., down to 99.5% DNA identity between North and Central Pacific provinces) and suggest that microbes evolve faster than ocean currents can disperse them. This approach can also be used to explore environmental selection. Copyright © 2014, American Association for the Advancement of Science.

Mathematical modelling of the maternal cardiovascular system in the three stages of pregnancy.

PubMed

Corsini, Chiara; Cervi, Elena; Migliavacca, Francesco; Schievano, Silvia; Hsia, Tain-Yen; Pennati, Giancarlo

2017-09-01

In this study, a mathematical model of the female circulation during pregnancy is presented in order to investigate the hemodynamic response to the cardiovascular changes associated with each trimester of pregnancy. First, a preliminary lumped parameter model of the circulation of a non-pregnant female was developed, including the heart, the systemic circulation with a specific block for the uterine district and the pulmonary circulation. The model was first tested at rest; then heart rate and vascular resistances were individually varied to verify the correct response to parameter alterations characterising pregnancy. In order to simulate hemodynamics during pregnancy at each trimester, the main changes applied to the model consisted in reducing vascular resistances, and simultaneously increasing heart rate and ventricular wall volumes. Overall, reasonable agreement was found between model outputs and in vivo data, with the trends of the cardiac hemodynamic quantities suggesting correct response of the heart model throughout pregnancy. Results were reported for uterine hemodynamics, with flow tracings resembling typical Doppler velocity waveforms at each stage, including pulsatility indexes. Such a model may be used to explore the changes that happen during pregnancy in female with cardiovascular diseases. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

Observations and Modeling of the Transient General Circulation of the North Pacific Basin

NASA Technical Reports Server (NTRS)

McWilliams, James C.

2000-01-01

Because of recent progress in satellite altimetry and numerical modeling and the accumulation and archiving of long records of hydrographic and meteorological variables, it is becoming feasible to describe and understand the transient general circulation of the ocean (i.e., variations with spatial scales larger than a few hundred kilometers and time scales of seasonal and longer-beyond the mesoscale). We have carried out various studies in investigation of the transient general circulation of the Pacific Ocean from a coordinated analysis of satellite altimeter data, historical hydrographic gauge data, scatterometer wind observations, reanalyzed operational wind fields, and a variety of ocean circulation models. Broadly stated, our goal was to achieve a phenomenological catalogue of different possible types of large-scale, low-frequency variability, as a context for understanding the observational record. The approach is to identify the simplest possible model from which particular observed phenomena can be isolated and understood dynamically and then to determine how well these dynamical processes are represented in more complex Oceanic General Circulation Models (OGCMs). Research results have been obtained on Rossby wave propagation and transformation, oceanic intrinsic low-frequency variability, effects of surface gravity waves, pacific data analyses, OGCM formulation and developments, and OGCM simulations of forced variability.

Advanced Model for Extreme Lift and Improved Aeroacoustics (AMELIA)

NASA Technical Reports Server (NTRS)

Lichtwardt, Jonathan; Paciano, Eric; Jameson, Tina; Fong, Robert; Marshall, David

2012-01-01

With the very recent advent of NASA's Environmentally Responsible Aviation Project (ERA), which is dedicated to designing aircraft that will reduce the impact of aviation on the environment, there is a need for research and development of methodologies to minimize fuel burn, emissions, and reduce community noise produced by regional airliners. ERA tackles airframe technology, propulsion technology, and vehicle systems integration to meet performance objectives in the time frame for the aircraft to be at a Technology Readiness Level (TRL) of 4-6 by the year of 2020 (deemed N+2). The proceeding project that investigated similar goals to ERA was NASA's Subsonic Fixed Wing (SFW). SFW focused on conducting research to improve prediction methods and technologies that will produce lower noise, lower emissions, and higher performing subsonic aircraft for the Next Generation Air Transportation System. The work provided in this investigation was a NASA Research Announcement (NRA) contract #NNL07AA55C funded by Subsonic Fixed Wing. The project started in 2007 with a specific goal of conducting a large-scale wind tunnel test along with the development of new and improved predictive codes for the advanced powered-lift concepts. Many of the predictive codes were incorporated to refine the wind tunnel model outer mold line design. The large scale wind tunnel test goal was to investigate powered lift technologies and provide an experimental database to validate current and future modeling techniques. Powered-lift concepts investigated were Circulation Control (CC) wing in conjunction with over-the-wing mounted engines to entrain the exhaust to further increase the lift generated by CC technologies alone. The NRA was a five-year effort; during the first year the objective was to select and refine CESTOL concepts and then to complete a preliminary design of a large-scale wind tunnel model for the large scale test. During the second, third, and fourth years the large-scale wind tunnel model design would be completed, manufactured, and calibrated. During the fifth year the large scale wind tunnel test was conducted. This technical memo will describe all phases of the Advanced Model for Extreme Lift and Improved Aeroacoustics (AMELIA) project and provide a brief summary of the background and modeling efforts involved in the NRA. The conceptual designs considered for this project and the decision process for the selected configuration adapted for a wind tunnel model will be briefly discussed. The internal configuration of AMELIA, and the internal measurements chosen in order to satisfy the requirements of obtaining a database of experimental data to be used for future computational model validations. The external experimental techniques that were employed during the test, along with the large-scale wind tunnel test facility are covered in great detail. Experimental measurements in the database include forces and moments, and surface pressure distributions, local skin friction measurements, boundary and shear layer velocity profiles, far-field acoustic data and noise signatures from turbofan propulsion simulators. Results and discussion of the circulation control performance, over-the-wing mounted engines, and the combined performance are also discussed in great detail.

Administration of Traditional Chinese Blood Circulation Activating Drugs for Microvascular Complications in Patients with Type 2 Diabetes Mellitus.

PubMed

He, Lisha; Wang, Han; Gu, Chengjuan; He, Xinhui; Zhao, Linhua; Tong, Xiaolin

2016-01-01

Traditional Chinese medicine (TCM) is an important complementary strategy for treating diabetes mellitus (DM) in China. Traditional Chinese blood circulation activating drugs are intended to guide an overall approach to the prevention and treatment of microvascular complications of DM. The core mechanism is related to the protection of the vascular endothelium and the basement membrane. Here, we reviewed the scientific evidence underpinning the use of blood circulation activating drugs to prevent and treat DM-induced microvascular complications, including diabetic nephropathy (DN), diabetic peripheral neuropathy (DPN), and diabetic retinopathy (DR). Furthermore, we summarized the effects and mechanism of TCM on improving blood rheology, inhibiting aggregation of platelet, forming advanced glycation end products (AGEs), regulating oxidative stress, reducing blood fat, and improving lipid metabolism. The paper provides a new theoretical basis for the clinical practice of TCM in the prevention and treatment of DM and its microvascular complications.

North Atlantic ocean circulation and abrupt climate change during the last glaciation.

PubMed

Henry, L G; McManus, J F; Curry, W B; Roberts, N L; Piotrowski, A M; Keigwin, L D

2016-07-29

The most recent ice age was characterized by rapid and hemispherically asynchronous climate oscillations, whose origin remains unresolved. Variations in oceanic meridional heat transport may contribute to these repeated climate changes, which were most pronounced during marine isotope stage 3, the glacial interval 25 thousand to 60 thousand years ago. We examined climate and ocean circulation proxies throughout this interval at high resolution in a deep North Atlantic sediment core, combining the kinematic tracer protactinium/thorium (Pa/Th) with the deep water-mass tracer, epibenthic δ(13)C. These indicators suggest reduced Atlantic overturning circulation during every cool northern stadial, with the greatest reductions during episodic Hudson Strait iceberg discharges, while sharp northern warming followed reinvigorated overturning. These results provide direct evidence for the ocean's persistent, central role in abrupt glacial climate change. Copyright © 2016, American Association for the Advancement of Science.

Power generation costs and ultimate thermal hydraulic power limits in hypothetical advanced designs with natural circulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Duffey, R.B.; Rohatgi, U.S.

Maximum power limits for hypothetical designs of natural circulation plants can be described analytically. The thermal hydraulic design parameters are those which limit the flow, being the elevations, flow areas, and loss coefficients. WE have found some simple ``design`` equations for natural circulation flow to power ratio, and for the stability limit. The analysis of historical and available data for maximum capacity factor estimation shows 80% to be reasonable and achievable. The least cost is obtained by optimizing both hypothetical plant performance for a given output,a nd the plant layout and design. There is also scope to increase output andmore » reduce cost by considering design variations of primary and secondary pressure, and by optimizing component elevations and loss coefficients. The design limits for each are set by stability and maximum flow considerations, which deserve close and careful evaluation.« less

Thermohaline circulation crisis and impacts during the mid-Pleistocene transition.

PubMed

Pena, Leopoldo D; Goldstein, Steven L

2014-07-18

The mid-Pleistocene transition (MPT) marked a fundamental change in glacial-interglacial periodicity, when it increased from ~41-thousand-year to 100-thousand-year cycles and developed higher-amplitude climate variability without substantial changes in the Milankovitch forcing. Here, we document, by using Nd isotopes, a major disruption of the ocean thermohaline circulation (THC) system during the MPT between marine isotope stages (MISs) 25 and 21 at ~950 to 860 thousand years ago, which effectively marks the first 100-thousand-year cycle, including an exceptional weakening through a critical interglacial (MIS 23) at ~900 thousand years ago. Its recovery into the post-MPT 100-thousand-year world is characterized by continued weak glacial THC. The MPT ocean circulation crisis facilitated the coeval drawdown of atmospheric CO2 and high-latitude ice sheet growth, generating the conditions that stabilized 100-thousand-year cycles. Copyright © 2014, American Association for the Advancement of Science.

Initiation of the Immune Response by Extracellular Hsp72: Chaperokine Activity of Hsp72

PubMed Central

Asea, Alexzander

2007-01-01

Heat shock proteins exert their beneficial effects via basically two modes of action depending on their relative location within the host. Intracellular heat shock proteins found within cells serve a cytoprotective role by chaperoning naïve, misfolded and/or denatured proteins in response to stressful stimuli by a process known as the stress response. However, stressful stimuli also induce the release of intracellular heat shock proteins into the extracellular milieu and circulation. The extracellular heat shock protein proteins serve a cytostimulatory role by initiating immune responses designed to fend off microbial infection and destroy neoplastic transformed cells. This review will briefly cover recent advances into elucidating the mechanism(s) by which stress induces the release of heat shock proteins into the circulation, how it initiates immune responses and suggest the possible biological significance of circulating Hsp to the host. PMID:17502920

Initiation of the Immune Response by Extracellular Hsp72: Chaperokine Activity of Hsp72.

PubMed

Asea, Alexzander

2006-08-01

Heat shock proteins exert their beneficial effects via basically two modes of action depending on their relative location within the host. Intracellular heat shock proteins found within cells serve a cytoprotective role by chaperoning naïve, misfolded and/or denatured proteins in response to stressful stimuli by a process known as the stress response. However, stressful stimuli also induce the release of intracellular heat shock proteins into the extracellular milieu and circulation. The extracellular heat shock protein proteins serve a cytostimulatory role by initiating immune responses designed to fend off microbial infection and destroy neoplastic transformed cells. This review will briefly cover recent advances into elucidating the mechanism(s) by which stress induces the release of heat shock proteins into the circulation, how it initiates immune responses and suggest the possible biological significance of circulating Hsp to the host.

Modelling study of three-dimensional circulation and particle movement over the Sable Gully of Nova Scotia

NASA Astrophysics Data System (ADS)

Shan, Shiliang; Sheng, Jinyu; Greenan, Blair John William

2014-01-01

The Sable Gully is a broad deep underwater canyon located to the east of Sable Island on the edge of the Scotian Shelf. Being the home of many marine species including the endangered Northern Bottlenose Whale, the Gully was designated as a marine protected area (MPA) in 2004. Better understanding of physical environmental conditions over this MPA is needed for sustainable ecosystem management. In this study, a multi-nested ocean circulation model and a particle tracking model are used to examine the three-dimensional (3D) circulation and movement of particles carried passively by the flow over the Sable Gully. The 3D circulation model is driven by tides, wind, and surface heat/freshwater fluxes. The model performance is assessed by comparing the results with the previous numerical tidal results and current meter observations made in the Gully. The simulated tidal circulation over the Gully and adjacent waters is relatively strong on shallow banks and relatively weak on the continental slope. Below the depth of the Gully rim ( ˜ 200 m), the tidal currents are constrained by the thalweg of the Gully and amplified toward the Gully head. The simulated subtidal circulation in the Gully has a complex spatial structure and significant seasonal variability. The simulated time-dependent 3D flow fields are then used in a particle tracking model to study the particle movements, downstream and upstream areas, and residence time of the Gully. Based on the movements of particles released at the depth of the Gully rim and tracked forward in time, the e-folding residence time is estimated to be about 7 and 13 days in February and August 2006, respectively. The Gully flanks are identified as high retention areas with the typical residence time of 10 and 20 days in February and August 2006, respectively. Tracking particles with and without tides reveals that tidal circulation reduces the value of residence time in the Gully, particularly along the Gully flanks.

Stable isotope paleoaltimetry and the evolution of landscapes and life

NASA Astrophysics Data System (ADS)

Mulch, Andreas

2016-01-01

Reconstructing topography of our planet not only advances our knowledge of the geodynamic processes that shape the Earth's surface; equally important it adds a key element towards understanding long-term continental moisture transport, atmospheric circulation and the distribution of biomes and biodiversity. Stable isotope paleoaltimetry exploits systematic decreases in the oxygen (δ18O) or hydrogen (δD) isotopic composition of precipitation along a mountain front when the interaction of topography and advected moist air masses induces orographic precipitation. These changes in δ18O or δD can be recovered from the geologic record and recent geochemical and modeling advances allow a broad range of proxy materials to be evaluated. Over the last 10 yr stable isotope paleoaltimetry has witnessed rapidly expanding research activities and has produced a broad array of fascinating tectonic and geomorphologic studies many of which have concentrated on determining the elevation history of continental plateau regions. These single-site studies have greatly expanded what used to be very sparse global paleoaltimetric data. The challenge now lies in disentangling the surface uplift component from the impact of climate change on δ18O and δD in precipitation. The robustness of stable isotope paleoaltimetry can be enhanced when high-elevation δ18O or δD data are referenced against low-elevation sites that track climate-modulated sea level δ18O or δD of precipitation through time (' δ- δ approach'). Analysis of central Andean paleosols documents that differences in δ18O of soil carbonate between the Subandean foreland and the Bolivian Altiplano are small between 11 and 7 Ma but rise rapidly to ca. 2.9‰ after 7 Ma, corroborating the magnitude of late Miocene change in δ18O on the Altiplano. Future advances in stable isotope paleoaltimetry will greatly benefit from addressing four key challenges: (1) Identifying topographically-induced changes in atmospheric circulation and associated teleconnections in the global climate system that affect δ18O or δD of precipitation; (2) Evaluating on a case-by-case basis if temporal and spatial changes in isotope lapse rates influence interpretations of paleoelevation; (3) Interfacing with phylogenetic techniques to evaluate competing hypotheses with respect to the timing of surface uplift and the diversification of lineages; (4) Characterizing feedbacks between changes in surface elevation and atmospheric circulation as these are likely to be equally important to the diversification of lineages than changes in surface elevation alone. Tackling these challenges will benefit from the accelerating pace of improved data-model comparisons and rapidly evolving geochemical techniques for reconstructing precipitation patterns. Most importantly, stable isotope paleoaltimetry has the potential to develop into a truly interdisciplinary field if innovative tectonic/paleoclimatic and evolutionary biology/phylogenetic approaches are integrated into a common research framework. It therefore, opens new avenues to study the long-term evolution of landscapes and life.

Magnetic Flux Circulation During Dawn-Dusk Oriented Interplanetary Magnetic Field

NASA Technical Reports Server (NTRS)

Mitchell, E. J.; Lopez, R. E.; Fok, M.-C.; Deng, Y.; Wiltberger, M.; Lyon, J.

2010-01-01

Magnetic flux circulation is a primary mode of energy transfer from the solar wind into the ionosphere and inner magnetosphere. For southward interplanetary magnetic field (IMF), magnetic flux circulation is described by the Dungey cycle (dayside merging, night side reconnection, and magnetospheric convection), and both the ionosphere and inner magnetosphere receive energy. For dawn-dusk oriented IMF, magnetic flux circulation is not well understood, and the inner magnetosphere does not receive energy. Several models have been suggested for possible reconnection patterns; the general pattern is: dayside merging; reconnection on the dayside or along the dawn/dusk regions; and, return flow on dayside only. These models are consistent with the lack of energy in the inner magnetosphere. We will present evidence that the Dungey cycle does not explain the energy transfer during dawn-dusk oriented IMF. We will also present evidence of how magnetic flux does circulate during dawn-dusk oriented IMF, specifically how the magnetic flux reconnects and circulates back.

Mantle circulation models with variational data assimilation: Inferring past mantle flow and structure from plate motion histories and seismic tomography

NASA Astrophysics Data System (ADS)

Bunge, Hans-Peter

2002-08-01

Earth's mantle overturns itself about once every 200 Million years (myrs). Prima facie evidence for this overturn is the motion of tectonic plates at the surface of the Earth driving the geologic activity of our planet. Supporting evidence also comes from seismic tomograms of the Earth's interior that reveal the convective currents in remarkable clarity. Much has been learned about the physics of solid state mantle convection over the past two decades aided primarily by sophisticated computer simulations. Such simulations are reaching the threshold of fully resolving the convective system globally. In this talk we will review recent progress in mantle dynamics studies. We will then turn our attention to the fundamental question of whether it is possible to explicitly reconstruct mantle flow back in time. This is a classic problem of history matching, amenable to control theory and data assimilation. The technical advances that make such approach feasible are dramatically increasing compute resources, represented for example through Beowulf clusters, and new observational initiatives, represented for example through the US-Array effort that should lead to an order-of-magnitude improvement in our ability to resolve Earth structure seismically below North America. In fact, new observational constraints on deep Earth structure illustrate the growing importance of of improving our data assimilation skills in deep Earth models. We will explore data assimilation through high resolution global adjoint models of mantle circulation and conclude that it is feasible to reconstruct mantle flow back in time for at least the past 100 myrs.

Multi-pentad prediction of precipitation variability over Southeast Asia during boreal summer using BCC_CSM1.2

NASA Astrophysics Data System (ADS)

Li, Chengcheng; Ren, Hong-Li; Zhou, Fang; Li, Shuanglin; Fu, Joshua-Xiouhua; Li, Guoping

2018-06-01

Precipitation is highly variable in space and discontinuous in time, which makes it challenging for models to predict on subseasonal scales (10-30 days). We analyze multi-pentad predictions from the Beijing Climate Center Climate System Model version 1.2 (BCC_CSM1.2), which are based on hindcasts from 1997 to 2014. The analysis focus on the skill of the model to predict precipitation variability over Southeast Asia from May to September, as well as its connections with intraseasonal oscillation (ISO). The effective precipitation prediction length is about two pentads (10 days), during which the skill measured by anomaly correlation is greater than 0.1. In order to further evaluate the performance of the precipitation prediction, the diagnosis results of the skills of two related circulation fields show that the prediction skills for the circulation fields exceed that of precipitation. Moreover, the prediction skills tend to be higher when the amplitude of ISO is large, especially for a boreal summer intraseasonal oscillation. The skills associated with phases 2 and 5 are higher, but that of phase 3 is relatively lower. Even so, different initial phases reflect the same spatial characteristics, which shows higher skill of precipitation prediction in the northwest Pacific Ocean. Finally, filter analysis is used on the prediction skills of total and subseasonal anomalies. The results of the two anomaly sets are comparable during the first two lead pentads, but thereafter the skill of the total anomalies is significantly higher than that of the subseasonal anomalies. This paper should help advance research in subseasonal precipitation prediction.

Gravity Wave Mixing and Effective Diffusivity for Minor Chemical Constituents in the Mesosphere/Lower Thermosphere

NASA Astrophysics Data System (ADS)

Grygalashvyly, M.; Becker, E.; Sonnemann, G. R.

2012-06-01

The influence of gravity waves (GWs) on the distributions of minor chemical constituents in the mesosphere-lower thermosphere (MLT) is studied on the basis of the effective diffusivity concept. The mixing ratios of chemical species used for calculations of the effective diffusivity are obtained from numerical experiments with an off-line coupled model of the dynamics and chemistry abbreviated as KMCM-MECTM (Kuehlungsborn Mechanistic general Circulation Model—MEsospheric Chemistry-Transport Model). In our control simulation the MECTM is driven with the full dynamical fields from an annual cycle simulation with the KMCM, where mid-frequency GWs down to horizontal wavelengths of 350 km are resolved and their wave-mean flow interaction is self-consistently induced by an advanced turbulence model. A perturbation simulation with the MECTM is defined by eliminating all meso-scale variations with horizontal wavelengths shorter than 1000 km from the dynamical fields by means of spectral filtering before running the MECTM. The response of the MECTM to GWs perturbations reveals strong effects on the minor chemical constituents. We show by theoretical arguments and numerical diagnostics that GWs have direct, down-gradient mixing effects on all long-lived minor chemical species that possess a mean vertical gradient in the MLT. Introducing the term wave diffusion (WD) and showing that wave mixing yields approximately the same WD coefficient for different chemical constituents, we argue that it is a useful tool for diagnostic irreversible transport processes. We also present a detailed discussion of the gravity-wave mixing effects on the photochemistry and highlight the consequences for the general circulation of the MLT.

Seasonal Overturning Circulation in the Red Sea

NASA Astrophysics Data System (ADS)

Yao, F.; Hoteit, I.; Koehl, A.

2010-12-01

The Red Sea exhibits a distinct seasonal overturning circulation. In winter, a typical two-layer exchange structure, with a fresher inflow from the Gulf of Aden on top of an outflow from the Red Sea, is established. In summer months (June to September) this circulation pattern is changed to a three-layer structure: a surface outflow from the Red Sea on top of a subsurface intrusion of the Gulf of Aden Intermediate Water and a weakened deep outflow. This seasonal variability is studied using a general circulation model, MITgcm, with 6 hourly NCEP atmospheric forcing. The model is able to reproduce the observed seasonal variability very well. The forcing mechanisms of the seasonal variability related to seasonal surface wind stress and buoyancy flux, and water mass transformation processes associated with the seasonal overturning circulation are analyzed and presented.

The Twist Tensor Nuclear Norm for Video Completion.

PubMed

Hu, Wenrui; Tao, Dacheng; Zhang, Wensheng; Xie, Yuan; Yang, Yehui

2017-12-01

In this paper, we propose a new low-rank tensor model based on the circulant algebra, namely, twist tensor nuclear norm (t-TNN). The twist tensor denotes a three-way tensor representation to laterally store 2-D data slices in order. On one hand, t-TNN convexly relaxes the tensor multirank of the twist tensor in the Fourier domain, which allows an efficient computation using fast Fourier transform. On the other, t-TNN is equal to the nuclear norm of block circulant matricization of the twist tensor in the original domain, which extends the traditional matrix nuclear norm in a block circulant way. We test the t-TNN model on a video completion application that aims to fill missing values and the experiment results validate its effectiveness, especially when dealing with video recorded by a nonstationary panning camera. The block circulant matricization of the twist tensor can be transformed into a circulant block representation with nuclear norm invariance. This representation, after transformation, exploits the horizontal translation relationship between the frames in a video, and endows the t-TNN model with a more powerful ability to reconstruct panning videos than the existing state-of-the-art low-rank models.

Efficiency of circulant diallels via mixed models in the selection of papaya genotypes resistant to foliar fungal diseases.

PubMed

Vivas, M; Silveira, S F; Viana, A P; Amaral, A T; Cardoso, D L; Pereira, M G

2014-07-02

Diallel crossing methods provide information regarding the performance of genitors between themselves and their hybrid combinations. However, with a large number of parents, the number of hybrid combinations that can be obtained and evaluated become limited. One option regarding the number of parents involved is the adoption of circulant diallels. However, information is lacking regarding diallel analysis using mixed models. This study aimed to evaluate the efficacy of the method of linear mixed models to estimate, for variable resistance to foliar fungal diseases, components of general and specific combining ability in a circulant table with different s values. Subsequently, 50 diallels were simulated for each s value, and the correlations and estimates of the combining abilities of the different diallel combinations were analyzed. The circulant diallel method using mixed modeling was effective in the classification of genitors regarding their combining abilities relative to the complete diallels. The numbers of crosses in which each genitor(s) will compose the circulant diallel and the estimated heritability affect the combining ability estimates. With three crosses per parent, it is possible to obtain good concordance (correlation above 0.8) between the combining ability estimates.

Narrowing of the Upwelling Branch of the Brewer-Dobson Circulation and Hadley Cell in Chemistry-Climate Model Simulations of the 21st Century

NASA Technical Reports Server (NTRS)

Li, Feng; Stolarski, Richard S.; Pawson, Steven; Newman, Paul A.; Waugh, Darryn

2010-01-01

Changes in the width of the upwelling branch of the Brewer-Dobson circulation and Hadley cell in the 21st Century are investigated using simulations from a coupled chemistry-climate model. In these model simulations the tropical upwelling region narrows in the troposphere and lower stratosphere. The narrowing of the Brewer-Dobson circulation is caused by an equatorward shift of Rossby wave critical latitudes and Eliassen-Palm flux convergence in the subtropical lower stratosphere. In the troposphere, the model projects an expansion of the Hadley cell's poleward boundary, but a narrowing of the Hadley rising branch. Model results suggest that the narrowing of the Hadley cell ascent is also eddy-driven.

A time-dependent, three-dimensional model of the Delaware Bay and River system. Part 2: Three-dimensional flow fields and residual circulation

NASA Astrophysics Data System (ADS)

Galperin, Boris; Mellor, George L.

1990-09-01

The three-dimensional model of Delaware Bay, River and adjacent continental shelf was described in Part 1. Here, Part 2 of this two-part paper demonstrates that the model is capable of realistic simulation of current and salinity distributions, tidal cycle variability, events of strong mixing caused by high winds and rapid salinity changes due to high river runoff. The 25-h average subtidal circulation strongly depends on the wind forcing. Monthly residual currents and salinity distributions demonstrate a classical two-layer estuarine circulation wherein relatively low salinity water flows out at the surface and compensating high salinity water from the shelf flows at the bottom. The salinity intrusion is most vigorous along deep channels in the Bay. Winds can generate salinity fronts inside and outside the Bay and enhance or weaken the two-layer circulation pattern. Since the portion of the continental shelf included in the model is limited, the model shelf circulation is locally wind-driven and excludes such effects as coastally trapped waves and interaction with Gulf Stream rings; nevertheless, a significant portion of the coastal elevation variability is hindcast by the model. Also, inclusion of the shelf improves simulation of salinity inside the Bay compared with simulations where the salinity boundary condition is specified at the mouth of the Bay.

Hypertension induces brain β-amyloid accumulation, cognitive impairment, and memory deterioration through activation of receptor for advanced glycation end products in brain vasculature.

PubMed

Carnevale, Daniela; Mascio, Giada; D'Andrea, Ivana; Fardella, Valentina; Bell, Robert D; Branchi, Igor; Pallante, Fabio; Zlokovic, Berislav; Yan, Shirley Shidu; Lembo, Giuseppe

2012-07-01

Although epidemiological data associate hypertension with a strong predisposition to develop Alzheimer disease, no mechanistic explanation exists so far. We developed a model of hypertension, obtained by transverse aortic constriction, leading to alterations typical of Alzheimer disease, such as amyloid plaques, neuroinflammation, blood-brain barrier dysfunction, and cognitive impairment, shown here for the first time. The aim of this work was to investigate the mechanisms involved in Alzheimer disease of hypertensive mice. We focused on receptor for advanced glycation end products (RAGE) that critically regulates Aβ transport at the blood-brain barrier and could be influenced by vascular factors. The hypertensive challenge had an early and sustained effect on RAGE upregulation in brain vessels of the cortex and hippocampus. Interestingly, RAGE inhibition protected from hypertension-induced Alzheimer pathology, as showed by rescue from cognitive impairment and parenchymal Aβ deposition. The increased RAGE expression in transverse aortic coarctation mice was induced by increased circulating advanced glycation end products and sustained by their later deposition in brain vessels. Interestingly, a daily treatment with an advanced glycation end product inhibitor or antioxidant prevented the development of Alzheimer traits. So far, Alzheimer pathology in experimental animal models has been recognized using only transgenic mice overexpressing amyloid precursor. This is the first study demonstrating that a chronic vascular insult can activate brain vascular RAGE, favoring parenchymal Aβ deposition and the onset of cognitive deterioration. Overall we demonstrate that RAGE activation in brain vessels is a crucial pathogenetic event in hypertension-induced Alzheimer disease, suggesting that inhibiting this target can limit the onset of vascular-related Alzheimer disease.

Using the Model Coupling Toolkit to couple earth system models

USGS Publications Warehouse

Warner, J.C.; Perlin, N.; Skyllingstad, E.D.

2008-01-01

Continued advances in computational resources are providing the opportunity to operate more sophisticated numerical models. Additionally, there is an increasing demand for multidisciplinary studies that include interactions between different physical processes. Therefore there is a strong desire to develop coupled modeling systems that utilize existing models and allow efficient data exchange and model control. The basic system would entail model "1" running on "M" processors and model "2" running on "N" processors, with efficient exchange of model fields at predetermined synchronization intervals. Here we demonstrate two coupled systems: the coupling of the ocean circulation model Regional Ocean Modeling System (ROMS) to the surface wave model Simulating WAves Nearshore (SWAN), and the coupling of ROMS to the atmospheric model Coupled Ocean Atmosphere Prediction System (COAMPS). Both coupled systems use the Model Coupling Toolkit (MCT) as a mechanism for operation control and inter-model distributed memory transfer of model variables. In this paper we describe requirements and other options for model coupling, explain the MCT library, ROMS, SWAN and COAMPS models, methods for grid decomposition and sparse matrix interpolation, and provide an example from each coupled system. Methods presented in this paper are clearly applicable for coupling of other types of models. ?? 2008 Elsevier Ltd. All rights reserved.

Relationship among Phosphorus Circulation Activity, Bacterial Biomass, pH, and Mineral Concentration in Agricultural Soil.

PubMed

Adhikari, Dinesh; Jiang, Tianyi; Kawagoe, Taiki; Kai, Takamitsu; Kubota, Kenzo; Araki, Kiwako S; Kubo, Motoki

2017-12-04

Improvement of phosphorus circulation in the soil is necessary to enhance phosphorus availability to plants. Phosphorus circulation activity is an index of soil's ability to supply soluble phosphorus from organic phosphorus in the soil solution. To understand the relationship among phosphorus circulation activity; bacterial biomass; pH; and Fe, Al, and Ca concentrations (described as mineral concentration in this paper) in agricultural soil, 232 soil samples from various agricultural fields were collected and analyzed. A weak relationship between phosphorus circulation activity and bacterial biomass was observed in all soil samples ( R ² = 0.25), and this relationship became significantly stronger at near-neutral pH (6.0-7.3; R ² = 0.67). No relationship between phosphorus circulation activity and bacterial biomass was observed at acidic (pH < 6.0) or alkaline (pH > 7.3) pH. A negative correlation between Fe and Al concentrations and phosphorus circulation activity was observed at acidic pH ( R ² = 0.72 and 0.73, respectively), as well as for Ca at alkaline pH ( R ² = 0.64). Therefore, bacterial biomass, pH, and mineral concentration should be considered together for activation of phosphorus circulation activity in the soil. A relationship model was proposed based on the effects of bacterial biomass and mineral concentration on phosphorus circulation activity. The suitable conditions of bacterial biomass, pH, and mineral concentration for phosphorus circulation activity could be estimated from the relationship model.

Circulating asymmetric dimethylarginine and the risk of preeclampsia: a meta-analysis based on 1338 participants.

PubMed

Yuan, Jing; Wang, Xinguo; Xie, Yudou; Wang, Yuzhi; Dong, Lei; Li, Hong; Zhu, Tongyu

2017-07-04

Patients with preeclampsia have higher circulating asymmetric dimethylarginine (ADMA). However, whether circulating ADMA is elevated before the diagnosis of preeclampsia has not been determined. A meta-analysis of observational studies that reported circulating ADMA level before the onset of preeclampsia was performed. Pubmed and Embase were searched. Standardized mean differences (SMD) with 95% confidence intervals (CI) were used to estimate the differences in circulating ADMA. A random effect model or a fixed effect model was applied depending on the heterogeneity. The predictive efficacy of circulating ADMA for the incidence of preeclampsia was also explored. Eleven comparisons with 1338 pregnant women were included. The pooled results showed that the circulating ADMA was significantly higher in women who subsequently developed preeclampsia as compared with those did not (SMD: 0.71, p < 0.001) with a moderate heterogeneity (I2 = 43%). Stratified analyses suggested elevation of circulating ADMA is more remarkable in studies with GA of ADMA sampling ≥ 20 weeks (SMD: 0.89, p < 0.01) as compared those with GA of ADMA sampling < 20 weeks (SMD: 0.56, p < 0.01; p for subgroup interaction = 0.03). Differences of maternal age, study design, and ADMA measurement methods did not significantly affect the results. Only two studies evaluated the potential predicting ability of circulating ADMA for subsequent preeclampsia, and retrieved moderate predictive efficacy. Circulating ADMA is elevated before the development of preeclampsia. Studies are needed to evaluate the predictive efficacy of ADMA for the incidence of preeclampsia.

Recent intensification of the Walker Circulation and the role of natural sea surface temperature variability

NASA Astrophysics Data System (ADS)

Zhao, X.; Allen, R.

2017-12-01

In a warming world, the tropical atmospheric overturning circulation-including the Walker Circulation-is expected to weaken due to thermodynamic constraints. Tropical precipitation increases at a slower rate than water vapor-which increases according to Clausius Clapeyron scaling, assuming constant relative humidity-so the tropical overturning circulation slows down. This is supported by both observations and model simulations, which show a slowdown of the Walker Circulation over the 20th century. Model projections suggest a further weakening of the Walker Circulation in the 21st century. However, over the last several decades (1979-2014), multiple observations reveal a robust strengthening of the Walker Circulation. Although coupled CMIP5 simulations are unable to reproduce this strengthening, AMIP simulations-which feature the observed evolution of SSTs-are generally able to reproduce it. Assuming the ensemble mean sea surface temperatures (SSTs) from historical CMIP5 simulations accurately represent the externally forced SST response, the observed SSTs can be decomposed into a forced and an unforced component. CAM5 AMIP-type simulations driven by the unforced component of observed SSTs reproduce the observed strengthening of the Walker Circulation. Corresponding simulations driven by the forced component of observed SSTs yield a weaker Walker Circulation. These results are consistent with the zonal tropical SST gradient and the Bjerknes feedback. The unforced component of SSTs yield an increased SST gradient over tropical Pacific (a La Nina like pattern) and strengthening of the tropical trade winds, which constitute the lower branch of the Walker Circulation. The forced component of SSTs yields a zonally uniform tropical Pacific SST warming and a marginal weakening of the Walker Circulation. Our results suggest significant modulation of the tropical Walker Circulation by natural SST variability over the last several decades.

Thermospheric dynamics during November 21-22, 1981 - Dynamics Explorer measurements and thermospheric general circulation model predictions

NASA Technical Reports Server (NTRS)

Roble, R. G.; Killeen, T. L.; Spencer, N. W.; Heelis, R. A.; Reiff, P. H.

1988-01-01

Time-dependent aurora and magnetospheric convection parameterizations have been derived from solar wind and aurora particle data for November 21-22, 1981, and are used to drive the auroral and magnetospheric convection models that are embedded in the National Center for Atmospheric Research thermospheric general circulation model (TGCM). Neutral wind speeds and transition boundaries between the midlatitude solar-driven circulation and the high-latitude magnetospheric convection-driven circulation are examined on an orbit-by-orbit basis. The results show that TGCM-calculated winds and reversal boundary locations are in generally good agreement with Dynamics Explorer 2 measurements for the orbits studied. This suggests that, at least for this particular period of relatively moderate geomagnetic activity, the TGCM parameterizations on the eveningside of the auroral oval and polar cap are adequate.

Applying Ensemble Kalman Filter to Regional Ocean Circulation Model in the East Asian Marginal Sea

NASA Astrophysics Data System (ADS)

Pak, Gyun-Do; Kim, Young Ho; Chang, Kyung-Il

2010-05-01

We successfully apply the ensemble Kalman filter (EnKF) data assimilation scheme to the East Sea Regional Ocean Model (ESROM). The ESROM solves the three dimensional ocean primitive equations with the hydrostatic and Boussinesq approximations. The domain of ESROM fully covers East Sea with grid intervals of approximately 0.1˚. The ESROM has one inflow port, the Korea Strait, and two outflow ports, the Tsugaru and Soya straits. High resolution bathymetry of 1/60˚ (Choi et al., 2002) is adopted for the model topography. The ESROM is initialized using hydrographic data from World Ocean Atlas (WOA), and forced by monthly mean surface and open boundary conditions supplied from European Centre for Medium-Range Weather Forecast data, WOA and so on. The EnKF system is composed of 16 ensembles and thousands of observation data are assimilated at every assimilation step into its parallel version, which significantly reduces the required memory and computational time more than 3-fold compared with its serial version. To prevent the collapse of ensembles due to rank deficiency, we employ various schemes such as localization and inflation of the background error covariance and disturbance of observations. Sea surface temperature from the Advanced Very High Resolution Radiometer and in-situ temperature profiles from various sources including Argo floats have been assimilated into the EnKF system. For cyclonic circulation in the northern East Sea and paths of the East Korean Warm Current and the Nearshore Branch, the EnKF system reproduces the mean surface circulation more realistically than that in the case without data assimilation. Simulated area-averaged vertical temperature profiles also agrees well with the Generalized Digital Environmental Model data, which indicates that the EnKF system corrects the warming of subsurface temperature and the erosion of the permanent thermocline that are usually observed in numerical models without data assimilation. We also quantitatively validate the EnKF system by comparing its results with observed temperatures at 100 m for two years in the southwestern East Sea. We find that spatial and temporal correlations are higher and root-mean-square errors are lower in the EnKF system as compared with those systems without data assimilation.

Parameterized and resolved Southern Ocean eddy compensation

NASA Astrophysics Data System (ADS)

Poulsen, Mads B.; Jochum, Markus; Nuterman, Roman

2018-04-01

The ability to parameterize Southern Ocean eddy effects in a forced coarse resolution ocean general circulation model is assessed. The transient model response to a suite of different Southern Ocean wind stress forcing perturbations is presented and compared to identical experiments performed with the same model in 0.1° eddy-resolving resolution. With forcing of present-day wind stress magnitude and a thickness diffusivity formulated in terms of the local stratification, it is shown that the Southern Ocean residual meridional overturning circulation in the two models is different in structure and magnitude. It is found that the difference in the upper overturning cell is primarily explained by an overly strong subsurface flow in the parameterized eddy-induced circulation while the difference in the lower cell is mainly ascribed to the mean-flow overturning. With a zonally constant decrease of the zonal wind stress by 50% we show that the absolute decrease in the overturning circulation is insensitive to model resolution, and that the meridional isopycnal slope is relaxed in both models. The agreement between the models is not reproduced by a 50% wind stress increase, where the high resolution overturning decreases by 20%, but increases by 100% in the coarse resolution model. It is demonstrated that this difference is explained by changes in surface buoyancy forcing due to a reduced Antarctic sea ice cover, which strongly modulate the overturning response and ocean stratification. We conclude that the parameterized eddies are able to mimic the transient response to altered wind stress in the high resolution model, but partly misrepresent the unperturbed Southern Ocean meridional overturning circulation and associated heat transports.

A Novel Approach to Develop the Lower Order Model of Multi-Input Multi-Output System

NASA Astrophysics Data System (ADS)

Rajalakshmy, P.; Dharmalingam, S.; Jayakumar, J.

2017-10-01

A mathematical model is a virtual entity that uses mathematical language to describe the behavior of a system. Mathematical models are used particularly in the natural sciences and engineering disciplines like physics, biology, and electrical engineering as well as in the social sciences like economics, sociology and political science. Physicists, Engineers, Computer scientists, and Economists use mathematical models most extensively. With the advent of high performance processors and advanced mathematical computations, it is possible to develop high performing simulators for complicated Multi Input Multi Ouptut (MIMO) systems like Quadruple tank systems, Aircrafts, Boilers etc. This paper presents the development of the mathematical model of a 500 MW utility boiler which is a highly complex system. A synergistic combination of operational experience, system identification and lower order modeling philosophy has been effectively used to develop a simplified but accurate model of a circulation system of a utility boiler which is a MIMO system. The results obtained are found to be in good agreement with the physics of the process and with the results obtained through design procedure. The model obtained can be directly used for control system studies and to realize hardware simulators for boiler testing and operator training.

The Gottingen Minipig Is a Model of the Hematopoietic Acute Radiation Syndrome: G-Colony Stimulating Factor Stimulates Hematopoiesis and Enhances Survival From Lethal Total-Body γ-Irradiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moroni, Maria, E-mail: maria.moroni@usuhs.edu; Ngudiankama, Barbara F.; Christensen, Christine

Purpose: We are characterizing the Gottingen minipig as an additional large animal model for advanced drug testing for the acute radiation syndrome (ARS) to enhance the discovery and development of novel radiation countermeasures. Among the advantages provided by this model, the similarities to human hematologic parameters and dynamics of cell loss/recovery after irradiation provide a convenient means to compare the efficacy of drugs known to affect bone marrow cellularity and hematopoiesis. Methods and Materials: Male Gottingen minipigs, 4 to 5 months old and weighing 9 to 11 kg, were used for this study. We tested the standard off-label treatment formore » ARS, rhG-CSF (Neupogen, 10 μg/kg/day for 17 days), at the estimated LD70/30 total-body γ-irradiation (TBI) radiation dose for the hematopoietic syndrome, starting 24 hours after irradiation. Results: The results indicated that granulocyte colony stimulating factor (G-CSF) enhanced survival, stimulated recovery from neutropenia, and induced mobilization of hematopoietic progenitor cells. In addition, the administration of G-CSF resulted in maturation of monocytes/macrophages. Conclusions: These results support continuing efforts toward validation of the minipig as a large animal model for advanced testing of radiation countermeasures and characterization of the pathophysiology of ARS, and they suggest that the efficacy of G-CSF in improving survival after total body irradiation may involve mechanisms other than increasing the numbers of circulating granulocytes.« less

The Gottingen minipig is a model of the hematopoietic acute radiation syndrome: G-colony stimulating factor stimulates hematopoiesis and enhances survival from lethal total-body γ-irradiation.

PubMed

Moroni, Maria; Ngudiankama, Barbara F; Christensen, Christine; Olsen, Cara H; Owens, Rossitsa; Lombardini, Eric D; Holt, Rebecca K; Whitnall, Mark H

2013-08-01

We are characterizing the Gottingen minipig as an additional large animal model for advanced drug testing for the acute radiation syndrome (ARS) to enhance the discovery and development of novel radiation countermeasures. Among the advantages provided by this model, the similarities to human hematologic parameters and dynamics of cell loss/recovery after irradiation provide a convenient means to compare the efficacy of drugs known to affect bone marrow cellularity and hematopoiesis. Male Gottingen minipigs, 4 to 5 months old and weighing 9 to 11 kg, were used for this study. We tested the standard off-label treatment for ARS, rhG-CSF (Neupogen, 10 μg/kg/day for 17 days), at the estimated LD70/30 total-body γ-irradiation (TBI) radiation dose for the hematopoietic syndrome, starting 24 hours after irradiation. The results indicated that granulocyte colony stimulating factor (G-CSF) enhanced survival, stimulated recovery from neutropenia, and induced mobilization of hematopoietic progenitor cells. In addition, the administration of G-CSF resulted in maturation of monocytes/macrophages. These results support continuing efforts toward validation of the minipig as a large animal model for advanced testing of radiation countermeasures and characterization of the pathophysiology of ARS, and they suggest that the efficacy of G-CSF in improving survival after total body irradiation may involve mechanisms other than increasing the numbers of circulating granulocytes. Published by Elsevier Inc.

Advances in small animal mesentery models for in vivo flow cytometry, dynamic microscopy, and drug screening

PubMed Central

Galanzha, Ekaterina I; Tuchin, Valery V; Zharov, Vladimir P

2007-01-01

Using animal mesentery with intravital optical microscopy is a well-established experimental model for studying blood and lymph microcirculation in vivo. Recent advances in cell biology and optical techniques provide the basis for extending this model for new applications, which should generate significantly improved experimental data. This review summarizes the achievements in this specific area, including in vivo label-free blood and lymph photothermal flow cytometry, super-sensitive fluorescence image cytometry, light scattering and speckle flow cytometry, microvessel dynamic microscopy, infrared (IR) angiography, and high-speed imaging of individual cells in fast flow. The capabilities of these techniques, using the rat mesentery model, were demonstrated in various studies; e.g., real-time quantitative detection of circulating and migrating individual blood and cancer cells, studies on vascular dynamics with a focus on lymphatics under normal conditions and under different interventions (e.g. lasers, drugs, nicotine), assessment of lymphatic disturbances from experimental lymphedema, monitoring cell traffic between blood and lymph systems, and high-speed imaging of cell transient deformability in flow. In particular, the obtained results demonstrated that individual cell transportation in living organisms depends on cell type (e.g., normal blood or leukemic cells), the cell’s functional state (e.g., live, apoptotic, or necrotic), and the functional status of the organism. Possible future applications, including in vivo early diagnosis and prevention of disease, monitoring immune response and apoptosis, chemo- and radio-sensitivity tests, and drug screening, are also discussed. PMID:17226898

Representation of Clear and Cloudy Boundary Layers in Climate Models. Chapter 14

NASA Technical Reports Server (NTRS)

Randall, D. A.; Shao, Q.; Branson, M.

1997-01-01

The atmospheric general circulation models which are being used as components of climate models rely on their boundary layer parameterizations to produce realistic simulations of the surface turbulent fluxes of sensible heat. moisture. and momentum: of the boundary-layer depth over which these fluxes converge: of boundary layer cloudiness: and of the interactions of the boundary layer with the deep convective clouds that grow upwards from it. Two current atmospheric general circulation models are used as examples to show how these requirements are being addressed: these are version 3 of the Community Climate Model. which has been developed at the U.S. National Center for Atmospheric Research. and the Colorado State University atmospheric general circulation model. The formulations and results of both models are discussed. Finally, areas for future research are suggested.

Renewed circulation scheme of the Baltic Sea - based on the 40-year simulation with GETM.

NASA Astrophysics Data System (ADS)

Maljutenko, Ilja; Raudsepp, Urmas

2015-04-01

The general circulation of the Baltic Sea has been characterized as cyclonic in all sub-basins based on numerous measurements and model simulations. From the long-term hydrodynamical simulation our model results have verified the general cyclonic circulation in the Baltic Proper and in the Gulf of Bothnia, but the Gulf of Finland and the Gulf of Riga have shown tendency to anticyclonic circulation. We have applied the General Estuarine Transport Model ( GETM ) for the period of 1966 - 2006 with a 1 nautical mile horizontal resolution and density adaptive bottom following vertical coordinates to make it possible to simulate horizontal and vertical density gradients with better precision. The atmospheric forcing from dynamically downscaled ERA40-HIRLAM and parametrized lateral boundary conditions are applied. Model simulation show close agreement with measurements conducted in the main monitoring stations in the BS during the simulation period. The geostrophic adjustment of density driven currents along with the upward salinity flux due to entrainment could explain the anticyclonic circulation and strong coastal current. Mean vertical velocities show that upward and downward movements are forming closed vertical circulation loops along the bottom slope of the Baltic Proper and the Gulf of Bothnia. The model has also reproduced patchy vertical movement across the BS with some distinctive areas of upward advective fluxes in the GoF along the thalweg. The distinctive areas of deepwater upwelling are also evident in the Gdansk Basin, western Gotland Basin, northern Gotland Basin and in the northen part of the Bothnia Sea.

Documentation of the GLAS fourth order general circulation model. Volume 2: Scalar code

NASA Technical Reports Server (NTRS)

Kalnay, E.; Balgovind, R.; Chao, W.; Edelmann, D.; Pfaendtner, J.; Takacs, L.; Takano, K.

1983-01-01

Volume 2, of a 3 volume technical memoranda contains a detailed documentation of the GLAS fourth order general circulation model. Volume 2 contains the CYBER 205 scalar and vector codes of the model, list of variables, and cross references. A variable name dictionary for the scalar code, and code listings are outlined.

Assessing the quality of bottom water temperatures from the Finite-Volume Community Ocean Model (FVCOM) in the Northwest Atlantic Shelf region

NASA Astrophysics Data System (ADS)

Li, Bai; Tanaka, Kisei R.; Chen, Yong; Brady, Damian C.; Thomas, Andrew C.

2017-09-01

The Finite-Volume Community Ocean Model (FVCOM) is an advanced coastal circulation model widely utilized for its ability to simulate spatially and temporally evolving three-dimensional geophysical conditions of complex and dynamic coastal regions. While a body of literature evaluates model skill in surface fields, independent studies validating model skill in bottom fields over large spatial and temporal scales are scarce because these fields cannot be remotely sensed. In this study, an evaluation of FVCOM skill in modeling bottom water temperature was conducted by comparison to hourly in situ observed bottom temperatures recorded by the Environmental Monitors on Lobster Traps (eMOLT), a program that attached thermistors to commercial lobster traps from 2001 to 2013. Over 2 × 106 pairs of FVCOM-eMOLT records were evaluated by a series of statistical measures to quantify accuracy and precision of the modeled data across the Northwest Atlantic Shelf region. The overall comparison between modeled and observed data indicates reliable skill of FVCOM (r2 = 0.72; root mean squared error = 2.28 °C). Seasonally, the average absolute errors show higher model skill in spring, fall and winter than summer. We speculate that this is due to the increased difficulty of modeling high frequency variability in the exact position of the thermocline and frontal zones. The spatial patterns of the residuals suggest that there is improved similarity between modeled and observed data at higher latitudes. We speculate that this is due to increased tidal mixing at higher latitudes in our study area that reduces stratification in winter, allowing improved model accuracy. Modeled bottom water temperatures around Cape Cod, the continental shelf edges, and at one location at the entrance to Penobscot Bay were characterized by relatively high errors. Constraints for future uses of FVCOM bottom water temperature are provided based on the uncertainties in temporal-spatial patterns. This study is novel as it is the first skill assessment of a regional ocean circulation model in bottom fields at high spatial and temporal scales in the Northwest Atlantic Shelf region.

Aerographers Mate 1 & C: Rate Training Manual.

ERIC Educational Resources Information Center

Naval Training Command, Pensacola, FL.

One of the series for enlisted Navy and Naval Reserve personnel, the training manual prepares students for advancement within their rating, aids in on-the-job training, or serves as a review source. Charts, graphs, tables, maps, and illustrations supplement detailed text covering atmospheric physics and world climatology, air masses, circulation,…

NASA Oceanic Processes Program, fiscal year 1983

NASA Technical Reports Server (NTRS)

Nelson, R. M. (Editor); Pieri, D. C. (Editor)

1984-01-01

Accomplishments, activities, and plans are highlighted for studies of ocean circulation, air sea interaction, ocean productivity, and sea ice. Flight projects discussed include TOPEX, the ocean color imager, the advanced RF tracking system, the NASA scatterometer, and the pilot ocean data system. Over 200 papers generated by the program are listed.

Library Aides: Building Character, Advancing Service

ERIC Educational Resources Information Center

Muronaga, Karen; Masumura, Emmi

2008-01-01

Many school library media specialists, especially in elementary schools, establish library clubs and library monitor programs. In most cases, these clubs and programs are limited to students assisting with clerical duties in the library such as shelving books and manning the circulation desk under supervision. The library media specialist assigns…

Haematopoiesis in molluscs: a review of haemocyte development and function in gastropods, cephalopods and bivalves

PubMed Central

Pila, EA; Sullivan, JT; Wu, XZ; Fang, J; Rudko, SP; Gordy, MA; Hanington, PC

2015-01-01

Haematopoiesis is a process that is responsible for generating sufficient numbers of blood cells in the circulation and in tissues. It is central to maintenance of homeostasis within an animal, and is critical for defense against infection. While haematopoiesis is common to all animals possessing a circulatory system, the specific mechanisms and ultimate products of haematopoietic events vary greatly. Our understanding of this process in non-vertebrate organisms is primarily derived from those species that serve as developmental and immunological models, with sparse investigations having been carried out in other organisms spanning the metazoa. As research into the regulation of immune and blood cell development advances, we have begun to gain insight into haematopoietic events in a wider array of animals, including the molluscs. What began in the early 1900’s as observational studies on the morphological characteristics of circulating immune cells has now advanced to mechanistic investigations of the cytokines, growth factors, receptors, signalling pathways, and patterns of gene expression that regulate molluscan haemocyte development. Emerging is a picture of an incredible diversity of developmental processes and outcomes that parallels the biological diversity observed within the different classes of the phylum Mollusca. However, our understanding of haematopoiesis in molluscs stems primarily from the three most-studied classes, the Gastropoda, Cephalopoda and Bivalvia. While these represent perhaps the molluscs of greatest economic and medical importance, the fact that our information is limited to only 3 of the 9 extant classes in the phylum highlights the need for further investigation in this area. In this review, we summarize the existing literature that defines haematopoiesis and its products in gastropods, cephalopods and bivalves. PMID:26592965

Haematopoiesis in molluscs: A review of haemocyte development and function in gastropods, cephalopods and bivalves.

PubMed

Pila, E A; Sullivan, J T; Wu, X Z; Fang, J; Rudko, S P; Gordy, M A; Hanington, P C

2016-05-01

Haematopoiesis is a process that is responsible for generating sufficient numbers of blood cells in the circulation and in tissues. It is central to maintenance of homeostasis within an animal, and is critical for defense against infection. While haematopoiesis is common to all animals possessing a circulatory system, the specific mechanisms and ultimate products of haematopoietic events vary greatly. Our understanding of this process in non-vertebrate organisms is primarily derived from those species that serve as developmental and immunological models, with sparse investigations having been carried out in other organisms spanning the metazoa. As research into the regulation of immune and blood cell development advances, we have begun to gain insight into haematopoietic events in a wider array of animals, including the molluscs. What began in the early 1900's as observational studies on the morphological characteristics of circulating immune cells has now advanced to mechanistic investigations of the cytokines, growth factors, receptors, signalling pathways, and patterns of gene expression that regulate molluscan haemocyte development. Emerging is a picture of an incredible diversity of developmental processes and outcomes that parallels the biological diversity observed within the different classes of the phylum Mollusca. However, our understanding of haematopoiesis in molluscs stems primarily from the three most-studied classes, the Gastropoda, Cephalopoda and Bivalvia. While these represent perhaps the molluscs of greatest economic and medical importance, the fact that our information is limited to only 3 of the 9 extant classes in the phylum highlights the need for further investigation in this area. In this review, we summarize the existing literature that defines haematopoiesis and its products in gastropods, cephalopods and bivalves. Copyright © 2015 Elsevier Ltd. All rights reserved.

Statistical performance of image cytometry for DNA, lipids, cytokeratin, & CD45 in a model system for circulation tumor cell detection.

PubMed

Futia, Gregory L; Schlaepfer, Isabel R; Qamar, Lubna; Behbakht, Kian; Gibson, Emily A

2017-07-01

Detection of circulating tumor cells (CTCs) in a blood sample is limited by the sensitivity and specificity of the biomarker panel used to identify CTCs over other blood cells. In this work, we present Bayesian theory that shows how test sensitivity and specificity set the rarity of cell that a test can detect. We perform our calculation of sensitivity and specificity on our image cytometry biomarker panel by testing on pure disease positive (D + ) populations (MCF7 cells) and pure disease negative populations (D - ) (leukocytes). In this system, we performed multi-channel confocal fluorescence microscopy to image biomarkers of DNA, lipids, CD45, and Cytokeratin. Using custom software, we segmented our confocal images into regions of interest consisting of individual cells and computed the image metrics of total signal, second spatial moment, spatial frequency second moment, and the product of the spatial-spatial frequency moments. We present our analysis of these 16 features. The best performing of the 16 features produced an average separation of three standard deviations between D + and D - and an average detectable rarity of ∼1 in 200. We performed multivariable regression and feature selection to combine multiple features for increased performance and showed an average separation of seven standard deviations between the D + and D - populations making our average detectable rarity of ∼1 in 480. Histograms and receiver operating characteristics (ROC) curves for these features and regressions are presented. We conclude that simple regression analysis holds promise to further improve the separation of rare cells in cytometry applications. © 2017 International Society for Advancement of Cytometry. © 2017 International Society for Advancement of Cytometry.

Gallic acid attenuates type I diabetic nephropathy in rats.

PubMed

Garud, Mayuresh Sudamrao; Kulkarni, Yogesh Anant

2018-02-25

Literature suggests that TGF-β1 has a central role in the progression of diabetic nephropathy and its down regulation can improve the disease condition. Oxidative stress, generation of advanced glycation end products and activation of renin angiotensin system are the connecting links between hyperglycemia and TGF-β1 over expression. Gallic acid is a phytochemical having wide range of biological activities. Gallic acid is reported to have antioxidant and advanced glycation inhibitory activity. It has also shown inhibitory effects on angiotensin converting enzyme. Gallic acid qualifies as a drug candidate to be tested in the diabetic nephropathy, one of the important complication of diabetes. Streptozotocin (55 mg/kg body weight, i.p.) induced diabetic nephropathy was used as an experimental model. Gallic acid was evaluated for its possible effect at the dose of 20 and 40 mg/kg body weight. Gallic acid treatment significantly lowered plasma levels of the creatinine and blood urea nitrogen and elevated the levels of the protein and albumin. Gallic acid also improved creatinine clearance. Determination of oxidative stress parameters showed that the oxidative stress in kidney tissues was reduced significantly in gallic acid treated animals. Results of the plasma, urine and oxidative stress parameters were also reflected in the histopathological evaluation showing improvement in kidney pathophysiology. ELISA assay for circulating TGF-β1 evaluation and immunohistochemical study for determination of kidney expression of TGF-β1 revealed that gallic acid significantly lowered both the circulating and tissue levels of TGF-β1. Results support the hypothesis that gallic acid can be effectively used in the treatment of diabetic nephropathy. Copyright © 2018 Elsevier B.V. All rights reserved.

A Nonlinear Multigrid Solver for an Atmospheric General Circulation Model Based on Semi-Implicit Semi-Lagrangian Advection of Potential Vorticity

NASA Technical Reports Server (NTRS)

McCormick, S.; Ruge, John W.

1998-01-01

This work represents a part of a project to develop an atmospheric general circulation model based on the semi-Lagrangian advection of potential vorticity (PC) with divergence as the companion prognostic variable.

Multimodel Evidence for an Atmospheric Circulation Response to Arctic Sea Ice Loss in the CMIP5 Future Projections

NASA Astrophysics Data System (ADS)

Zappa, G.; Pithan, F.; Shepherd, T. G.

2018-01-01

Previous single-model experiments have found that Arctic sea ice loss can influence the atmospheric circulation. To evaluate this process in a multimodel ensemble, a novel methodology is here presented and applied to infer the influence of Arctic sea ice loss in the CMIP5 future projections. Sea ice influence is estimated by comparing the circulation response in the RCP8.5 scenario against the circulation response to sea surface warming and CO2 increase inferred from the AMIPFuture and AMIP4xCO2 experiments, where sea ice is unperturbed. Multimodel evidence of the impact of sea ice loss on midlatitude atmospheric circulation is identified in late winter (January-March), when the sea ice-related surface heat flux perturbation is largest. Sea ice loss acts to suppress the projected poleward shift of the North Atlantic jet, to increase surface pressure in northern Siberia, and to lower it in North America. These features are consistent with previous single-model studies, and the present results indicate that they are robust to model formulation.

Multimodel Evidence for an Atmospheric Circulation Response to Arctic Sea Ice Loss in the CMIP5 Future Projections.

PubMed

Zappa, G; Pithan, F; Shepherd, T G

2018-01-28

Previous single-model experiments have found that Arctic sea ice loss can influence the atmospheric circulation. To evaluate this process in a multimodel ensemble, a novel methodology is here presented and applied to infer the influence of Arctic sea ice loss in the CMIP5 future projections. Sea ice influence is estimated by comparing the circulation response in the RCP8.5 scenario against the circulation response to sea surface warming and CO 2 increase inferred from the AMIPFuture and AMIP4xCO2 experiments, where sea ice is unperturbed. Multimodel evidence of the impact of sea ice loss on midlatitude atmospheric circulation is identified in late winter (January-March), when the sea ice-related surface heat flux perturbation is largest. Sea ice loss acts to suppress the projected poleward shift of the North Atlantic jet, to increase surface pressure in northern Siberia, and to lower it in North America. These features are consistent with previous single-model studies, and the present results indicate that they are robust to model formulation.

Plausible Effect of Weather on Atlantic Meridional Overturning Circulation with a Coupled General Circulation Model

NASA Astrophysics Data System (ADS)

Liu, Zedong; Wan, Xiuquan

2018-04-01

The Atlantic meridional overturning circulation (AMOC) is a vital component of the global ocean circulation and the heat engine of the climate system. Through the use of a coupled general circulation model, this study examines the role of synoptic systems on the AMOC and presents evidence that internally generated high-frequency, synoptic-scale weather variability in the atmosphere could play a significant role in maintaining the overall strength and variability of the AMOC, thereby affecting climate variability and change. Results of a novel coupling technique show that the strength and variability of the AMOC are greatly reduced once the synoptic weather variability is suppressed in the coupled model. The strength and variability of the AMOC are closely linked to deep convection events at high latitudes, which could be strongly affected by the weather variability. Our results imply that synoptic weather systems are important in driving the AMOC and its variability. Thus, interactions between atmospheric weather variability and AMOC may be an important feedback mechanism of the global climate system and need to be taken into consideration in future climate change studies.

NOAA Climate Program Office Contributions to National ESPC

NASA Astrophysics Data System (ADS)

Higgins, W.; Huang, J.; Mariotti, A.; Archambault, H. M.; Barrie, D.; Lucas, S. E.; Mathis, J. T.; Legler, D. M.; Pulwarty, R. S.; Nierenberg, C.; Jones, H.; Cortinas, J. V., Jr.; Carman, J.

2016-12-01

NOAA is one of five federal agencies (DOD, DOE, NASA, NOAA, and NSF) which signed an updated charter in 2016 to partner on the National Earth System Prediction Capability (ESPC). Situated within NOAA's Office of Oceanic and Atmospheric Research (OAR), NOAA Climate Program Office (CPO) programs contribute significantly to the National ESPC goals and activities. This presentation will provide an overview of CPO contributions to National ESPC. First, we will discuss selected CPO research and transition activities that directly benefit the ESPC coupled model prediction capability, including The North American Multi-Model Ensemble (NMME) seasonal prediction system The Subseasonal Experiment (SubX) project to test real-time subseasonal ensemble prediction systems. Improvements to the NOAA operational Climate Forecast System (CFS), including software infrastructure and data assimilation. Next, we will show how CPO's foundational research activities are advancing future ESPC capabilities. Highlights will include: The Tropical Pacific Observing System (TPOS) to provide the basis for predicting climate on subseasonal to decadal timescales. Subseasonal-to-Seasonal (S2S) processes and predictability studies to improve understanding, modeling and prediction of the MJO. An Arctic Research Program to address urgent needs for advancing monitoring and prediction capabilities in this major area of concern. Advances towards building an experimental multi-decadal prediction system through studies on the Atlantic Meridional Overturning Circulation (AMOC). Finally, CPO has embraced Integrated Information Systems (IIS's) that build on the innovation of programs such as the National Integrated Drought Information System (NIDIS) to develop and deliver end to end environmental information for key societal challenges (e.g. extreme heat; coastal flooding). These contributions will help the National ESPC better understand and address societal needs and decision support requirements.

Simulations of the north sea circulation, its variability, and its implementation as hydrodynamical forcing in ERSEM

NASA Astrophysics Data System (ADS)

Lenhart, Hermann J.; Radach, Günther; Backhaus, Jan O.; Pohlmann, Thomas

The rationale is given of how the gross physical features of the circulation and the stratification of the North Sea have been aggregated for inclusion in the ecosystem box model ERSEM. As the ecosystem dynamics are to a large extent determined by small-scale physical events, the ecosystem model is forced with the circulation of a specific year rather than using the long-term mean circulation field. Especially the vertical exchange processes have been explicitly included, because the primary production strongly depends on them. Simulations with a general circulation model (GCM), forced by three-hourly meteorological fields, have been utilized to derive daily horizontal transport values driving ERSEM on boxes of sizes of a few 100 km. The daily vertical transports across a fixed 30-m interface provide the necessary short-term event character of the vertical exchange. For the years 1988 and 1989 the properties of the hydrodynamic flow fields are presented in terms of trajectories of the flow, thermocline depths, of water budgets, flushing times and diffusion rates. The results of the standard simulation with ERSEM show that the daily variability of the circulation, being smoothed by the box integration procedure, is transferred to the chemical and biological state variables to a very limited degree only.

Can preferred atmospheric circulation patterns over the North-Atlantic-Eurasian region be associated with arctic sea ice loss?

NASA Astrophysics Data System (ADS)

Crasemann, Berit; Handorf, Dörthe; Jaiser, Ralf; Dethloff, Klaus; Nakamura, Tetsu; Ukita, Jinro; Yamazaki, Koji

2017-12-01

In the framework of atmospheric circulation regimes, we study whether the recent Arctic sea ice loss and Arctic Amplification are associated with changes in the frequency of occurrence of preferred atmospheric circulation patterns during the extended winter season from December to March. To determine regimes we applied a cluster analysis to sea-level pressure fields from reanalysis data and output from an atmospheric general circulation model. The specific set up of the two analyzed model simulations for low and high ice conditions allows for attributing differences between the simulations to the prescribed sea ice changes only. The reanalysis data revealed two circulation patterns that occur more frequently for low Arctic sea ice conditions: a Scandinavian blocking in December and January and a negative North Atlantic Oscillation pattern in February and March. An analysis of related patterns of synoptic-scale activity and 2 m temperatures provides a synoptic interpretation of the corresponding large-scale regimes. The regimes that occur more frequently for low sea ice conditions are resembled reasonably well by the model simulations. Based on those results we conclude that the detected changes in the frequency of occurrence of large-scale circulation patterns can be associated with changes in Arctic sea ice conditions.

Collaborative Research: Improving Decadal Prediction of Arctic Climate Variability and Change Using a Regional Arctic

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gutowski, William J.

This project developed and applied a regional Arctic System model for enhanced decadal predictions. It built on successful research by four of the current PIs with support from the DOE Climate Change Prediction Program, which has resulted in the development of a fully coupled Regional Arctic Climate Model (RACM) consisting of atmosphere, land-hydrology, ocean and sea ice components. An expanded RACM, a Regional Arctic System Model (RASM), has been set up to include ice sheets, ice caps, mountain glaciers, and dynamic vegetation to allow investigation of coupled physical processes responsible for decadal-scale climate change and variability in the Arctic. RASMmore » can have high spatial resolution (~4-20 times higher than currently practical in global models) to advance modeling of critical processes and determine the need for their explicit representation in Global Earth System Models (GESMs). The pan-Arctic region is a key indicator of the state of global climate through polar amplification. However, a system-level understanding of critical arctic processes and feedbacks needs further development. Rapid climate change has occurred in a number of Arctic System components during the past few decades, including retreat of the perennial sea ice cover, increased surface melting of the Greenland ice sheet, acceleration and thinning of outlet glaciers, reduced snow cover, thawing permafrost, and shifts in vegetation. Such changes could have significant ramifications for global sea level, the ocean thermohaline circulation and heat budget, ecosystems, native communities, natural resource exploration, and commercial transportation. The overarching goal of the RASM project has been to advance understanding of past and present states of arctic climate and to improve seasonal to decadal predictions. To do this the project has focused on variability and long-term change of energy and freshwater flows through the arctic climate system. The three foci of this research are: - Changes in the freshwater flux between arctic climate system components resulting from decadal changes in land and sea ice, seasonal snow, vegetation, and ocean circulation. - Changing energetics due to decadal changes in ice mass, vegetation, and air-sea interactions. - The role of small-scale atmospheric and oceanic processes that influence decadal variability. This research has been addressing modes of natural climate variability as well as extreme and rapid climate change. RASM can facilitate studies of climate impacts (e.g., droughts and fires) and of ecosystem adaptations to these impacts.« less

Impacts of aerosol-monsoon interaction on rainfall and circulation over Northern India and the Himalaya Foothills

NASA Astrophysics Data System (ADS)

Lau, William K. M.; Kim, Kyu-Myong; Shi, Jainn-Jong; Matsui, T.; Chin, M.; Tan, Qian; Peters-Lidard, C.; Tao, W. K.

2017-09-01

The boreal summer of 2008 was unusual for the Indian monsoon, featuring exceptional heavy loading of dust aerosols over the Arabian Sea and northern-central India, near normal all-India rainfall, but excessive heavy rain, causing disastrous flooding in the Northern Indian Himalaya Foothills (NIHF) regions, accompanied by persistent drought conditions in central and southern India. Using the NASA Unified-physics Weather Research Forecast (NUWRF) model with fully interactive aerosol physics and dynamics, we carried out three sets of 7-day ensemble model forecast experiments: (1) control with no aerosol, (2) aerosol radiative effect only and (3) aerosol radiative and aerosol-cloud-microphysics effects, to study the impacts of aerosol-monsoon interactions on monsoon variability over the NIHF during the summer of 2008. Results show that aerosol-radiation interaction (ARI), i.e., dust aerosol transport, and dynamical feedback processes induced by aerosol-radiative heating, plays a key role in altering the large-scale monsoon circulation system, reflected by an increased north-south tropospheric temperature gradient, a northward shift of heavy monsoon rainfall, advancing the monsoon onset by 1-5 days over the HF, consistent with the EHP hypothesis (Lau et al. in Clim Dyn 26(7-8):855-864, 2006). Additionally, we found that dust aerosols, via the semi-direct effect, increase atmospheric stability, and cause the dissipation of a developing monsoon onset cyclone over northeastern India/northern Bay of Bengal. Eventually, in a matter of several days, ARI transforms the developing monsoon cyclone into meso-scale convective cells along the HF slopes. Aerosol-Cloud-microphysics Interaction (ACI) further enhances the ARI effect in invigorating the deep convection cells and speeding up the transformation processes. Results indicate that even in short-term (up to weekly) numerical forecasting of monsoon circulation and rainfall, effects of aerosol-monsoon interaction can be substantial and cannot be ignored.

Downscaling Reanalysis over Continental Africa with a Regional Model: NCEP Versus ERA Interim Forcing

NASA Technical Reports Server (NTRS)

Druyan, Leonard M.; Fulakeza, Matthew B.

2013-01-01

Five annual climate cycles (1998-2002) are simulated for continental Africa and adjacent oceans by a regional atmospheric model (RM3). RM3 horizontal grid spacing is 0.44deg at 28 vertical levels. Each of 2 simulation ensembles is driven by lateral boundary conditions from each of 2 alternative reanalysis data sets. One simulation downs cales National Center for Environmental Prediction reanalysis 2 (NCPR2) and the other the European Centre for Medium Range Weather Forecasts Interim reanalysis (ERA-I). NCPR2 data are archived at 2.5deg grid spacing, while a recent version of ERA-I provides data at 0.75deg spacing. ERA-I-forced simulations are recomrp. ended by the Coordinated Regional Downscaling Experiment (CORDEX). Comparisons of the 2 sets of simulations with each other and with observational evidence assess the relative performance of each downscaling system. A third simulation also uses ERA-I forcing, but degraded to the same horizontal resolution as NCPR2. RM3-simulated pentad and monthly mean precipitation data are compared to Tropical Rainfall Measuring Mission (TRMM) data, gridded at 0.5deg, and RM3-simulated circulation is compared to both reanalyses. Results suggest that each downscaling system provides advantages and disadvantages relative to the other. The RM3/NCPR2 achieves a more realistic northward advance of summer monsoon rains over West Africa, but RM3/ERA-I creates the more realistic monsoon circulation. Both systems recreate some features of JulySeptember 1999 minus 2002 precipitation differences. Degrading the resolution of ERA-I driving data unrealistically slows the monsoon circulation and considerably diminishes summer rainfall rates over West Africa. The high resolution of ERA-I data, therefore, contributes to the quality of the downscaling, but NCPR2laterai boundary conditions nevertheless produce better simulations of some features.

Linkages Between Global Vegetation and Climate: An Analysis Based on NOAA Advanced Very High Resolution Radiometer Data. Degree awarded by Vrije Universiteit, Amsterdam, Netherlands

NASA Technical Reports Server (NTRS)

Los, Sietse Oene

1998-01-01

A monthly global 1 degree by 1 degree data set from 1982 until 1990 was derived from data collected by the Advanced Very High Resolution Radiometer on board the NOAA 7, 9, and 11 satellites. This data set was used to study the interactions between variations in climate and variations in the "greenness" of vegetation. Studies with the Colorado State University atmospheric general circulation model coupled to the Simple Biosphere model showed a large sensitivity of the hydrological balance to changes in vegetation at low latitudes. The depletion of soil moisture as a result of increased vegetation density provided a negative feedback in an otherwise positive association between increased vegetation, increased evaporation, and increased precipitation proposed by Charney and coworkers. Analysis of climate data showed, at temperate to high latitudes, a positive association between variation in land surface temperature, sea surface temperature and vegetation greenness. At low latitudes the data indicated a positive association between variations in sea surface temperature, rainfall and vegetation greenness. The variations in mid- to high latitude temperatures affected the global average greenness and this could provide an explanation for the increased carbon uptake by the terrestrial surface over the past couple of decades.

Studies of longitudinal profile of electron bunches and impedance measurements at Indus-2 synchrotron radiation source

NASA Astrophysics Data System (ADS)

Garg, Akash Deep; Yadav, S.; Kumar, Mukesh; Shrivastava, B. B.; Karnewar, A. K.; Ojha, A.; Puntambekar, T. A.

2016-04-01

Indus-2 is a 3rd generation synchrotron radiation source at the Raja Ramanna Centre for Advanced Technology (RRCAT) in India. We study the longitudinal profile of electrons in Indus-2 by using dual sweep synchroscan streak camera at visible diagnostic beamline. In this paper, the longitudinal profiles of electron bunch are analyzed by filling beam current in a single bunch mode. These studies are carried at injection energy (550 MeV) and at ramped beam energy (2.5 GeV). The effects of the wakefield generated interactions between the circulating electrons and the surrounding vacuum chamber are analyzed in terms of measured effects on longitudinal beam distribution. The impedance of the storage ring is obtained by fitting the solutions of Haissinski equation to the measured bunch lengthening with different impedance models. The impedance of storage ring obtained by a series R+L impedance model indicates a resistance (R) of 1350±125 Ω, an inductance (L) of 180±25 nH and broadband impedance of 2.69 Ω. These results are also compared with the values obtained from measured synchronous phase advancing and scaling laws. These studies are very useful in better understanding and control of the electromagnetic interactions.

Cloud Feedback in Atmospheric General Circulation Models: An Update

NASA Technical Reports Server (NTRS)

Cess, R. D.; Zhang, M. H.; Ingram, W. J.; Potter, G. L.; Alekseev, V.; Barker, H. W.; Cohen-Solal, E.; Colman, R. A.; Dazlich, D. A.; DelGenio, A. D.;

Mars atmospheric circulation - Aspects from Viking Landers

NASA Technical Reports Server (NTRS)

Ryan, J. A.

1985-01-01

Winds measured by the two Viking Landers have been filtered and then compared with predictions from the general circulation model and to Orbiter observations of clouds and surface phenomena that indicate wind direction. This was done to determine the degree to which filtered winds may represent aspects of the general circulation. Excellent agreement was found between wind direction data from Lander 1 and the model predictions and Orbiter observations. For Lander 2, agreement was generally good, but there were periods of disagreement which indicate that the filtering did not remove other extraneous effects. It is concluded that Lander 1 gives a good representation of the general circulation at 22.5 deg N latitude but that Lander 2 is suspect. Most wind data from Lander 1 have yet to be analyzed. It appears that when analyzed these Lander 1 data (covering 3.5 Mars years) can provide information about interannual variations in the general circulation at the Lander latitude.

The key role of ozone depleting substances in weakening the Walker Circulation over the second half of the 20th Century

NASA Astrophysics Data System (ADS)

Bellomo, K.; Polvani, L. M.

2017-12-01

It is widely believed that the Walker Circulation will weaken in response to increasing greenhouse gases (GHG) by the end of the 21st century. But over the 20th century, the existence of a statistical significant weakening trends in the observations remains unclear. We here present new modelling evidence showing that Ozone Depleting Substances (ODS) may have significantly contributed to the weakening of the Walker Circulation over the years 1955-2005. While the primary impact of increasing ODS has been the formation of the ozone hole, it is perhaps not as widely appreciated that ODS are also powerful greenhouse gases. Using an ensemble of integrations with the the Whole Atmosphere Chemistry Climate Model, we show that the surface warming caused by increasing ODS over the second half of the 20th century causes a statistically significant weakening of the Walker Circulation in the model. In fact, we find that the increase of the other well-mixed GHG alone leads to a strengthening, not a weakening of the Walker Circulation, over that period in our model. When ODS concentrations are held fixed at 1950's levels, the effect of the other GHG is not sufficient, and a warming delay in the eastern tropical Pacific SST leads to an increase in the east-west SST gradient which is accompanied by a strengthening of the Walker Circulation. But, when the forcing from ODS is added in, the additional radiative forcing causes the eastern Pacific to warm faster, and the trend in the Walker Circulation reverses sign and becomes negative over the second half of the 20th century.

Variational data assimilative modeling of the Gulf of Maine in spring and summer 2010

NASA Astrophysics Data System (ADS)

Li, Yizhen; He, Ruoying; Chen, Ke; McGillicuddy, Dennis J.

2015-05-01

A data assimilative ocean circulation model is used to hindcast the Gulf of Maine [GOM) circulation in spring and summer 2010. Using the recently developed incremental strong constraint 4D Variational data assimilation algorithm, the model assimilates satellite sea surface temperature and in situ temperature and salinity profiles measured by expendable bathythermograph, Argo floats, and shipboard CTD casts. Validation against independent observations shows that the model skill is significantly improved after data assimilation. The data-assimilative model hindcast reproduces the temporal and spatial evolution of the ocean state, showing that a sea level depression southwest of the Scotian Shelf played a critical role in shaping the gulf-wide circulation. Heat budget analysis further demonstrates that both advection and surface heat flux contribute to temperature variability. The estimated time scale for coastal water to travel from the Scotian Shelf to the Jordan Basin is around 60 days, which is consistent with previous estimates based on in situ observations. Our study highlights the importance of resolving upstream and offshore forcing conditions in predicting the coastal circulation in the GOM.

Stratospheric wind errors, initial states and forecast skill in the GLAS general circulation model

NASA Technical Reports Server (NTRS)

Tenenbaum, J.

1983-01-01

Relations between stratospheric wind errors, initial states and 500 mb skill are investigated using the GLAS general circulation model initialized with FGGE data. Erroneous stratospheric winds are seen in all current general circulation models, appearing also as weak shear above the subtropical jet and as cold polar stratospheres. In this study it is shown that the more anticyclonic large-scale flows are correlated with large forecast stratospheric winds. In addition, it is found that for North America the resulting errors are correlated with initial state jet stream accelerations while for East Asia the forecast winds are correlated with initial state jet strength. Using 500 mb skill scores over Europe at day 5 to measure forecast performance, it is found that both poor forecast skill and excessive stratospheric winds are correlated with more anticyclonic large-scale flows over North America. It is hypothesized that the resulting erroneous kinetic energy contributes to the poor forecast skill, and that the problem is caused by a failure in the modeling of the stratospheric energy cycle in current general circulation models independent of vertical resolution.

A sigma-coordinate primitive equation model for studying the circulation in the South Atlantic Part II: Meridional transports and seasonal variability

NASA Astrophysics Data System (ADS)

Marchesiello, P.; Barnier, B.; de Miranda, A. P.

1998-04-01

The mean and seasonal variability of the circulation and meridional heat transport in the South Atlantic are investigated using a set of numerical experiments. The primitive equation model uses a topography-following (sigma) coordinate. The model domain is limited to the South Atlantic basin. Artificial boundaries at Drake Passage, between Brazil and Angola, and between South Africa and Antarctica are treated as open boundaries. Finally, recent and self-consistent estimates of seasonal fluxes are used to define a model-dependent atmospheric forcing. Quasi-diagnostic simulations forced by constant climatological winds are first conducted to determine the sensitivity of model solutions to bottom topography smoothing, and to diagnose meridional fluxes from a mass field that is relaxed to the annual climatology of Levitus (1982). Model results show good agreement with known climatological circulation features in this basin, especially in the Confluence Region, where coarse resolution models usually give smooth structures. Sensitivity studies show that the more detailed features of the circulation are influenced by the model bathymetry. The model simulates a meridional circulation whose upper branch (the return flow that balances the southward flow of North Atlantic Deep Water) is composed of Intermediate (IW) and Thermocline (TW) Waters. The transport of IW is found to be predominant, and the value of meridional heat transport consequently falls within the low estimates. We notice that the meridional heat balance is sensitive to the position of the Confluence. When this region occurs too far south, the amount of IW contributing to the return flow of the overturning cell is reduced. Prognostic simulations forced by seasonal winds and heat fluxes are studied to quantify the impact of wind forcing on the circulation in the South Atlantic. Particular attention is focused on meridional transports at 30°S. Analysis of the mean annual circulation confirms that the upper branch of the meridional circulation is predominantly composed of IW (9 Sv), rather than TW (5.3 Sv). The mean transport of the lower branch is 16 Sv, in agreement with recent estimates by Schlitzer (1996). The annual meridional heat transport (0.29 PW) is still within the low estimates, but agrees well with other estimates that give a dominant role to IW (Rintoul, 1991). Original results also concern the variability of the upper branch of the meridional circulation. It is shown that the wind creates seasonal variability in the Subtropical Gyre, which has a marked impact on the water mass balance in the South Atlantic. In winter, a large convergence to the north of the Subtropical Gyre (27°S) reduces the northward flow of IW, whereas stronger Ekman pumping favors an equatorward transport of TW. In summer, this convergence disappears and a larger transport of IW is allowed. Thus a more complex scheme is proposed for the meridional circulation, in which local wind forcing in the South Atlantic Basin has a significant role in preconditioning the surface waters of the global overturning cell.

The Numerical Studies Program for the Atmospheric General Circulation Experiment (AGCE) for Spacelab Flights

NASA Technical Reports Server (NTRS)

Fowlis, W. W. (Editor); Davis, M. H. (Editor)

1981-01-01

The atmospheric general circulation experiment (AGCE) numerical design for Spacelab flights was studied. A spherical baroclinic flow experiment which models the large scale circulations of the Earth's atmosphere was proposed. Gravity is simulated by a radial dielectric body force. The major objective of the AGCE is to study nonlinear baroclinic wave flows in spherical geometry. Numerical models must be developed which accurately predict the basic axisymmetric states and the stability of nonlinear baroclinic wave flows. A three dimensional, fully nonlinear, numerical model and the AGCE based on the complete set of equations is required. Progress in the AGCE numerical design studies program is reported.

Can the Ocean's Heat Engine Control Horizontal Circulation? Insights From the Caspian Sea

NASA Astrophysics Data System (ADS)

Bruneau, Nicolas; Zika, Jan; Toumi, Ralf

2017-10-01

We investigate the role of the ocean's heat engine in setting horizontal circulation using a numerical model of the Caspian Sea. The Caspian Sea can be seen as a virtual laboratory—a compromise between realistic global models that are hampered by long equilibration times and idealized basin geometry models, which are not constrained by observations. We find that increases in vertical mixing drive stronger thermally direct overturning and consequent conversion of available potential to kinetic energy. Numerical solutions with water mass structures closest to observations overturn 0.02-0.04 × 106 m3/s (sverdrup) representing the first estimate of Caspian Sea overturning. Our results also suggest that the overturning is thermally forced increasing in intensity with increasing vertical diffusivity. Finally, stronger thermally direct overturning is associated with a stronger horizontal circulation in the Caspian Sea. This suggests that the ocean's heat engine can strongly impact broader horizontal circulations in the ocean.

A continuum model for pressure-flow relationship in human pulmonary circulation.

PubMed

Huang, Wei; Zhou, Qinlian; Gao, Jian; Yen, R T

2011-06-01

A continuum model was introduced to analyze the pressure-flow relationship for steady flow in human pulmonary circulation. The continuum approach was based on the principles of continuum mechanics in conjunction with detailed measurement of vascular geometry, vascular elasticity and blood rheology. The pulmonary arteries and veins were considered as elastic tubes and the "fifth-power law" was used to describe the pressure-flow relationship. For pulmonary capillaries, the "sheet-flow" theory was employed and the pressure-flow relationship was represented by the "fourth-power law". In this paper, the pressure-flow relationship for the whole pulmonary circulation and the longitudinal pressure distribution along the streamlines were studied. Our computed data showed general agreement with the experimental data for the normal subjects and the patients with mitral stenosis and chronic bronchitis in the literature. In conclusion, our continuum model can be used to predict the changes of steady flow in human pulmonary circulation.

Linear thermal circulator based on Coriolis forces.

PubMed

Li, Huanan; Kottos, Tsampikos

2015-02-01

We show that the presence of a Coriolis force in a rotating linear lattice imposes a nonreciprocal propagation of the phononic heat carriers. Using this effect we propose the concept of Coriolis linear thermal circulator which can control the circulation of a heat current. A simple model of three coupled harmonic masses on a rotating platform permits us to demonstrate giant circulating rectification effects for moderate values of the angular velocities of the platform.

Critical Appraisal of Advanced Glycation End Products (AGEs) and Circulating Soluble Receptors for Advanced Glycation End Products (sRAGE) as a Predictive Biomarkers for Cardiovascular Disease in Hemodialysis Patients.

PubMed

Assiri, Adel M A; Kamel, Hala F M; ALrefai, Abeer A

2018-05-22

The interaction of advanced glycation end products (AGE) and their receptors promote vascular complications of diabetes in hemodialysis (HD) patients. The soluble form of the receptor for the advanced glycation end-products (sRAGE) has been studied as a vascular biomarker in various diseases with controversial results. Our aim was to evaluate the association of the serum levels of the AGEs and their receptor sRAGE with cardiovascular disease (CVD) and the cardiovascular risk factors among HD patients. There were 130 HD patients and 80 age and gender matched control subjects were involved; 31.5% of the HD group were diabetic, which was an underlying cause of renal impairment; 36.1% had CVD, which was comprising 44.7% of diabetics and 55.3% of non-diabetic patients. The AGEs and sRAGE were assessed by enzyme linked immunosorbent assay (ELISA). In addition, the lipid profile, glycemic indices, pre-dialysis renal function tests, and hemoglobin % (Hb) were evaluated. The results show that the circulating AGEs and sRAGE levels were significantly higher in the HD patients. Those with underlying diabetes displayed higher sRAGE levels, which were positively correlated with hyperglycemia, HbA1C, and total cholesterol (TC). The HD patients with an increased serum sRAGE exhibited more cardiovascular risk factors (hypercholesterolemia and anemia) with a high prevalence of CVD. Using a linear regression analysis, we found a significant association of sRAGE with CVD and TC among HD patients, regardless of whether associating diabetes was an underlying cause of renal impairment. Overall, the HD patients displayed significantly higher serum AGEs with a concomitant increase in the circulating sRAGE levels, mainly in the diabetic HD, which were significantly associated with the CVD (independent predictors) and CV risk factors (hypercholesterolemia), mainly sRAGEs, regardless of the underlying diabetes mellitus. This highlights the prognostic role of AGEs and sRAGE in HD patients regardless of underlying cause in order to predict the risk for CVD.

SpaceX Dragon Air Circulation System

NASA Technical Reports Server (NTRS)

Hernandez, Brenda; Piatrovich, Siarhei; Prina, Mauro

2011-01-01

The Dragon capsule is a reusable vehicle being developed by Space Exploration Technologies (SpaceX) that will provide commercial cargo transportation to the International Space Station (ISS). Dragon is designed to be a habitable module while it is berthed to ISS. As such, the Dragon Environmental Control System (ECS) consists of pressure control and pressure equalization, air sampling, fire detection, illumination, and an air circulation system. The air circulation system prevents pockets of stagnant air in Dragon that can be hazardous to the ISS crew. In addition, through the inter-module duct, the air circulation system provides fresh air from ISS into Dragon. To utilize the maximum volume of Dragon for cargo packaging, the Dragon ECS air circulation system is designed around cargo rack optimization. At the same time, the air circulation system is designed to meet the National Aeronautics Space Administration (NASA) inter-module and intra-module ventilation requirements and acoustic requirements. A flight like configuration of the Dragon capsule including the air circulation system was recently assembled for testing to assess the design for inter-module and intra-module ventilation and acoustics. The testing included the Dragon capsule, and flight configuration in the pressure section with cargo racks, lockers, all of the air circulation components, and acoustic treatment. The air circulation test was also used to verify the Computational Fluid Dynamics (CFD) model of the Dragon capsule. The CFD model included the same Dragon internal geometry that was assembled for the test. This paper will describe the Dragon air circulation system design which has been verified by testing the system and with CFD analysis.

Global 7 km mesh nonhydrostatic Model Intercomparison Project for improving TYphoon forecast (TYMIP-G7): experimental design and preliminary results

NASA Astrophysics Data System (ADS)

Nakano, Masuo; Wada, Akiyoshi; Sawada, Masahiro; Yoshimura, Hiromasa; Onishi, Ryo; Kawahara, Shintaro; Sasaki, Wataru; Nasuno, Tomoe; Yamaguchi, Munehiko; Iriguchi, Takeshi; Sugi, Masato; Takeuchi, Yoshiaki

2017-03-01

Recent advances in high-performance computers facilitate operational numerical weather prediction by global hydrostatic atmospheric models with horizontal resolutions of ˜ 10 km. Given further advances in such computers and the fact that the hydrostatic balance approximation becomes invalid for spatial scales < 10 km, the development of global nonhydrostatic models with high accuracy is urgently required. The Global 7 km mesh nonhydrostatic Model Intercomparison Project for improving TYphoon forecast (TYMIP-G7) is designed to understand and statistically quantify the advantages of high-resolution nonhydrostatic global atmospheric models to improve tropical cyclone (TC) prediction. A total of 137 sets of 5-day simulations using three next-generation nonhydrostatic global models with horizontal resolutions of 7 km and a conventional hydrostatic global model with a horizontal resolution of 20 km were run on the Earth Simulator. The three 7 km mesh nonhydrostatic models are the nonhydrostatic global spectral atmospheric Double Fourier Series Model (DFSM), the Multi-Scale Simulator for the Geoenvironment (MSSG) and the Nonhydrostatic ICosahedral Atmospheric Model (NICAM). The 20 km mesh hydrostatic model is the operational Global Spectral Model (GSM) of the Japan Meteorological Agency. Compared with the 20 km mesh GSM, the 7 km mesh models reduce systematic errors in the TC track, intensity and wind radii predictions. The benefits of the multi-model ensemble method were confirmed for the 7 km mesh nonhydrostatic global models. While the three 7 km mesh models reproduce the typical axisymmetric mean inner-core structure, including the primary and secondary circulations, the simulated TC structures and their intensities in each case are very different for each model. In addition, the simulated track is not consistently better than that of the 20 km mesh GSM. These results suggest that the development of more sophisticated initialization techniques and model physics is needed to further improve the TC prediction.

Validation of the BASALT model for simulating off-axis hydrothermal circulation in oceanic crust

NASA Astrophysics Data System (ADS)

Farahat, Navah X.; Archer, David; Abbot, Dorian S.

2017-08-01

Fluid recharge and discharge between the deep ocean and the porous upper layer of off-axis oceanic crust tends to concentrate in small volumes of rock, such as seamounts and fractures, that are unimpeded by low-permeability sediments. Basement structure, sediment burial, heat flow, and other regional characteristics of off-axis hydrothermal systems appear to produce considerable diversity of circulation behaviors. Circulation of seawater and seawater-derived fluids controls the extent of fluid-rock interaction, resulting in significant geochemical impacts. However, the primary regional characteristics that control how seawater is distributed within upper oceanic crust are still poorly understood. In this paper we present the details of the two-dimensional (2-D) BASALT (Basement Activity Simulated At Low Temperatures) numerical model of heat and fluid transport in an off-axis hydrothermal system. This model is designed to simulate a wide range of conditions in order to explore the dominant controls on circulation. We validate the BASALT model's ability to reproduce observations by configuring it to represent a thoroughly studied transect of the Juan de Fuca Ridge eastern flank. The results demonstrate that including series of narrow, ridge-parallel fractures as subgrid features produces a realistic circulation scenario at the validation site. In future projects, a full reactive transport version of the validated BASALT model will be used to explore geochemical fluxes in a variety of off-axis hydrothermal environments.

The Response of the South Asian Summer Monsoon Circulation to Intensified Irrigation in Global Climate Model Simulations

NASA Technical Reports Server (NTRS)

Shukla, Sonali P.; Puma, Michael J.; Cook, Benjamin I.

2013-01-01

Agricultural intensification in South Asia has resulted in the expansion and intensification of surface irrigation over the twentieth century. The resulting changes to the surface energy balance could affect the temperature contrasts between the South Asian land surface and the equatorial Indian Ocean, potentially altering the South Asian Summer Monsoon (SASM) circulation. Prior studies have noted apparent declines in the monsoon intensity over the twentieth century and have focused on how altered surface energy balances impact the SASM rainfall distribution. Here, we use the coupled Goddard Institute for Space Studies ModelE-R general circulation model to investigate the impact of intensifying irrigation on the large-scale SASM circulation over the twentieth century, including how the effect of irrigation compares to the impact of increasing greenhouse gas (GHG) forcing. We force our simulations with time-varying, historical estimates of irrigation, both alone and with twentieth century GHGs and other forcings. In the irrigation only experiment, irrigation rates correlate strongly with lower and upper level temperature contrasts between the Indian sub-continent and the Indian Ocean (Pearson's r = -0.66 and r = -0.46, respectively), important quantities that control the strength of the SASM circulation. When GHG forcing is included, these correlations strengthen: r = -0.72 and r = -0.47 for lower and upper level temperature contrasts, respectively. Under irrigated conditions, the mean SASM intensity in the model decreases only slightly and insignificantly. However, in the simulation with irrigation and GHG forcing, inter-annual variability of the SASM circulation decreases by *40 %, consistent with trends in the reanalysis products. This suggests that the inclusion of irrigation may be necessary to accurately simulate the historical trends and variability of the SASM system over the last 50 years. These findings suggest that intensifying irrigation, in concert with increased GHG forcing, is capable of reducing the variability of the simulated SASM circulation and altering the regional moisture transport by limiting the surface warming and reducing land-sea temperature gradients.

Uncertainties in Carbon Dioxide Radiative Forcing in Atmospheric General Circulation Models

NASA Technical Reports Server (NTRS)

Cess, R. D.; Zhang, M.-H.; Potter, G. L.; Gates, W. L.; Taylor, K. E.; Barker, H. W.; Colman, R. A.; Fraser, J. R.; McAvaney, B. J.; Dazlich, D. A.;

Do Coupled Climate Models Correctly SImulate the Upward Branch of the Deept Ocean Global Conveyor?

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sarmiento, Jorge L; Downes, Stephanie; Bianchi, Daniele

The large-scale meridional overturning circulation (MOC) connects the deep ocean, a major reservoir of carbon, to the other components of the climate system and must therefore be accurately represented in Earth System Models. Our project aims to address the specific question of the pathways and mechanisms controlling the upwelling branch of the MOC, a subject of significant disagreement between models and observational syntheses, and among general circulation models. Observations of these pathways are limited, particularly in regions of complex hydrography such as the Southern Ocean. As such, we rely on models to examine theories of the overturning circulation, both physicallymore » and biogeochemically. This grant focused on a particular aspect of the meridional overturning circulation (MOC) where there is currently significant disagreement between models and observationally based analyses of the MOC, and amongst general circulation models. In particular, the research focused on addressing the following questions: 1. Where does the deep water that sinks in the polar regions rise to the surface? 2. What processes are responsible for this rise? 3. Do state-of-the-art coupled GCMs capture these processes? Our research had three key components: observational synthesis, model development and model analysis. In this final report we outline the key results from these areas of research for the 2007 to 2012 grant period. The research described here was carried out primarily by graduate student, Daniele Bianchi (now a Postdoc at McGill University, Canada), and Postdoc Stephanie Downes (now a Research Fellow at The Australian national University, Australia). Additional support was provided for programmers Jennifer Simeon as well as Rick Slater.« less

Multi-scale modeling of Puget Sound using an unstructured-grid coastal ocean model: from tide flats to estuaries and coastal waters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Zhaoqing; Khangaonkar, Tarang

2010-11-19

Water circulation in Puget Sound, a large complex estuary system in the Pacific Northwest coastal ocean of the United States, is governed by multiple spatially and temporally varying forcings from tides, atmosphere (wind, heating/cooling, precipitation/evaporation, pressure), and river inflows. In addition, the hydrodynamic response is affected strongly by geomorphic features, such as fjord-like bathymetry and complex shoreline features, resulting in many distinguishing characteristics in its main and sub-basins. To better understand the details of circulation features in Puget Sound and to assist with proposed nearshore restoration actions for improving water quality and the ecological health of Puget Sound, a high-resolutionmore » (around 50 m in estuaries and tide flats) hydrodynamic model for the entire Puget Sound was needed. Here, a threedimensional circulation model of Puget Sound using an unstructured-grid finite volume coastal ocean model is presented. The model was constructed with sufficient resolution in the nearshore region to address the complex coastline, multi-tidal channels, and tide flats. Model open boundaries were extended to the entrance of the Strait of Juan de Fuca and the northern end of the Strait of Georgia to account for the influences of ocean water intrusion from the Strait of Juan de Fuca and the Fraser River plume from the Strait of Georgia, respectively. Comparisons of model results, observed data, and associated error statistics for tidal elevation, velocity, temperature, and salinity indicate that the model is capable of simulating the general circulation patterns on the scale of a large estuarine system as well as detailed hydrodynamics in the nearshore tide flats. Tidal characteristics, temperature/salinity stratification, mean circulation, and river plumes in estuaries with tide flats are discussed.« less

Evaluation of a Mineral Dust Simulation in the Atmospheric-Chemistry General Circulation Model-EMAC

NASA Astrophysics Data System (ADS)

Abdel Kader, M.; Astitha, M.; Lelieveld, J.

2012-04-01

This study presents an evaluation of the atmospheric mineral dust cycle in the Atmospheric Chemistry General Circulation Model (AC-GCM) using new developed dust emissions scheme. The dust cycle, as an integral part of the Earth System, plays an important role in the Earth's energy balance by both direct and indirect ways. As an aerosol, it significantly impacts the absorption and scattering of radiation in the atmosphere and can modify the optical properties of clouds and snow/ice surfaces. In addition, dust contributes to a range of physical, chemical and bio-geological processes that interact with the cycles of carbon and water. While our knowledge of the dust cycle, its impacts and interactions with the other global-scale bio-geochemical cycles has greatly advanced in the last decades, large uncertainties and knowledge gaps still exist. Improving the dust simulation in global models is essential to minimize the uncertainties in the model results related to dust. In this study, the results are based on the ECHAM5 Modular Earth Submodel System (MESSy) AC-GCM simulations using T106L31 spectral resolution (about 120km ) with 31 vertical levels. The GMXe aerosol submodel is used to simulate the phase changes of the dust particles between soluble and insoluble modes. Dust emission, transport and deposition (wet and dry) are calculated on-line along with the meteorological parameters in every model time step. The preliminary evaluation of the dust concentration and deposition are presented based on ground observations from various campaigns as well as the evaluation of the optical properties of dust using AERONET and satellite (MODIS and MISR) observations. Preliminarily results show good agreement with observations for dust deposition and optical properties. In addition, the global dust emissions, load, deposition and lifetime is in good agreement with the published results. Also, the uncertainties in the dust cycle that contribute to the overall model performance will be briefly discussed as it is a subject of future work.

Global Analysis, Interpretation and Modelling: An Earth Systems Modelling Program

NASA Technical Reports Server (NTRS)

Moore, Berrien, III; Sahagian, Dork

1997-01-01

The Goal of the GAIM is: To advance the study of the coupled dynamics of the Earth system using as tools both data and models; to develop a strategy for the rapid development, evaluation, and application of comprehensive prognostic models of the Global Biogeochemical Subsystem which could eventually be linked with models of the Physical-Climate Subsystem; to propose, promote, and facilitate experiments with existing models or by linking subcomponent models, especially those associated with IGBP Core Projects and with WCRP efforts. Such experiments would be focused upon resolving interface issues and questions associated with developing an understanding of the prognostic behavior of key processes; to clarify key scientific issues facing the development of Global Biogeochemical Models and the coupling of these models to General Circulation Models; to assist the Intergovernmental Panel on Climate Change (IPCC) process by conducting timely studies that focus upon elucidating important unresolved scientific issues associated with the changing biogeochemical cycles of the planet and upon the role of the biosphere in the physical-climate subsystem, particularly its role in the global hydrological cycle; and to advise the SC-IGBP on progress in developing comprehensive Global Biogeochemical Models and to maintain scientific liaison with the WCRP Steering Group on Global Climate Modelling.

Montane ecosystem productivity responds more to global circulation patterns than climatic trends.

PubMed

Desai, A R; Wohlfahrt, G; Zeeman, M J; Katata, G; Eugster, W; Montagnani, L; Gianelle, D; Mauder, M; Schmid, H-P

2016-02-01

Regional ecosystem productivity is highly sensitive to inter-annual climate variability, both within and outside the primary carbon uptake period. However, Earth system models lack sufficient spatial scales and ecosystem processes to resolve how these processes may change in a warming climate. Here, we show, how for the European Alps, mid-latitude Atlantic ocean winter circulation anomalies drive high-altitude summer forest and grassland productivity, through feedbacks among orographic wind circulation patterns, snowfall, winter and spring temperatures, and vegetation activity. Therefore, to understand future global climate change influence to regional ecosystem productivity, Earth systems models need to focus on improvements towards topographic downscaling of changes in regional atmospheric circulation patterns and to lagged responses in vegetation dynamics to non-growing season climate anomalies.

Montane ecosystem productivity responds more to global circulation patterns than climatic trends

NASA Astrophysics Data System (ADS)

Desai, A. R.; Wohlfahrt, G.; Zeeman, M. J.; Katata, G.; Eugster, W.; Montagnani, L.; Gianelle, D.; Mauder, M.; Schmid, H.-P.

2016-02-01

Regional ecosystem productivity is highly sensitive to inter-annual climate variability, both within and outside the primary carbon uptake period. However, Earth system models lack sufficient spatial scales and ecosystem processes to resolve how these processes may change in a warming climate. Here, we show, how for the European Alps, mid-latitude Atlantic ocean winter circulation anomalies drive high-altitude summer forest and grassland productivity, through feedbacks among orographic wind circulation patterns, snowfall, winter and spring temperatures, and vegetation activity. Therefore, to understand future global climate change influence to regional ecosystem productivity, Earth systems models need to focus on improvements towards topographic downscaling of changes in regional atmospheric circulation patterns and to lagged responses in vegetation dynamics to non-growing season climate anomalies.

On the reduced lifetime of nitrous oxide due to climate change induced acceleration of the Brewer-Dobson circulation as simulated by the MPI Earth System Model

NASA Astrophysics Data System (ADS)

Kracher, D.; Manzini, E.; Reick, C. H.; Schultz, M. G.; Stein, O.

2014-12-01

Greenhouse gas induced climate change will modify the physical conditions of the atmosphere. One of the projected changes is an acceleration of the Brewer-Dobson circulation in the stratosphere, as it has been shown in many model studies. This change in the stratospheric circulation consequently bears an effect on the transport and distribution of atmospheric components such as N2O. Since N2O is involved in ozone destruction, a modified distribution of N2O can be of importance for ozone chemistry. N2O is inert in the troposphere and decays only in the stratosphere. Thus, changes in the exchange between troposphere and stratosphere can also affect the stratospheric sink of N2O, and consequently its atmospheric lifetime. N2O is a potent greenhouse gas with a global warming potential of currently approximately 300 CO2-equivalents in a 100-year perspective. A faster decay in atmospheric N2O mixing ratios, i.e. a decreased atmospheric lifetime of N2O, will also reduce its global warming potential. In order to assess the impact of climate change on atmospheric circulation and implied effects on the distribution and lifetime of atmospheric N2O, we apply the Max Planck Institute Earth System Model, MPI-ESM. MPI-ESM consists of the atmospheric general circulation model ECHAM, the land surface model JSBACH, and MPIOM/HAMOCC representing ocean circulation and ocean biogeochemistry. Prognostic atmospheric N2O concentrations in MPI-ESM are determined by land N2O emissions, ocean-atmosphere N2O exchange and atmospheric tracer transport. As stratospheric chemistry is not explicitly represented in MPI-ESM, stratospheric decay rates of N2O are prescribed from a MACC MOZART simulation. Increasing surface temperatures and CO2 concentrations in the stratosphere impact atmospheric circulation differently. Thus, we conduct a series of transient runs with the atmospheric model of MPI-ESM to isolate different factors governing a shift in atmospheric circulation. From those transient simulations we diagnose decreasing tropospheric N2O concentrations, increased transport of N2O from the troposphere to the stratosphere, and increasing stratospheric decay of N2O leading to a reduction in atmospheric lifetime of N2O, in dependency to climate change evolution.

Circulating a Good Service Model at Its Core: Circulation!

ERIC Educational Resources Information Center

Hernandez, Edmee Sofia; Germain, Carol Anne, Ed.

2009-01-01

Circulation is the library's tireless foot soldier: it serves as the front gate to the library's services and resources. This service point is where most patrons enter and leave; and experience their first and last impressions--impressions that linger. In an age when academic libraries are facing meager budgets and declining usage statistics, this…

Dispensing with the DVD Circulation Dilemma

ERIC Educational Resources Information Center

Ellis, Mark

2008-01-01

Richmond Public Library (RPL) is a four-branch suburban library with the highest per capita circulation of any comparable library in Canada. While DVDs naturally fit into RPL's emphasis on popular material, circulating them using the standard model proved problematic: Long hold queues built up, DVDs idled on the hold shelves, and the circulation…

A comparison of two- and three-dimensional tracer transport within a stratospheric circulation model

NASA Technical Reports Server (NTRS)

Schneider, H.-R.; Geller, M. A.

1985-01-01

Use of the residual circulation for stratospheric tracer transport has been compared to a fully three-dimensional calculation. The wind fields used in this study were obtained from a global, semispectral, primitive equation model, extending from 10 to 100 km in altitude. Comparisons were done with a passive tracer and an ozone-like substance over a two-month period corresponding to a Northern Hemisphere winter. It was found that the use of the residual circulation can lead to errors in the tracer concentrations of about a factor of 2. The error is made up of two components. One is fluctuating with a period of approximately one month and reflects directly the wave transience that occurs on that time-scale. The second part is increasing steadily over the integration period and results from an overestimate of the vertical transport by the residual circulation. Furthermore, the equatorward and upward mixing that occurs with transport by the three-dimensional circulation at low latitudes is not well reproduced when the residual circulation is used.

Wind effect on the Atlantic meridional overturning circulation via sea ice and vertical diffusion

NASA Astrophysics Data System (ADS)

Yang, Haijun; Wang, Kun; Dai, Haijin; Wang, Yuxing; Li, Qing

2016-06-01

Effects of wind and fresh water on the Atlantic meridional overturning circulation (AMOC) are investigated using a fully coupled climate model. The AMOC can change significantly when perturbed by either wind stress or freshwater flux in the North Atlantic. This study focuses on wind stress effect. Our model results show that the wind forcing is crucial in maintaining the AMOC. Reducing wind forcing over the ocean can cause immediately weakening of the vertical salinity diffusion and convection in the mid-high latitudes Atlantic, resulting in an enhancement of vertical salinity stratification that restrains the deep water formation there, triggering a slowdown of the thermohaline circulation. As the thermohaline circulation weakens, the sea ice expands southward and melts, providing the upper ocean with fresh water that weakens the thermohaline circulation further. The wind perturbation experiments suggest a positive feedback between sea-ice and thermohaline circulation strength, which can eventually result in a complete shutdown of the AMOC. This study also suggests that sea-ice variability may be also important to the natural AMOC variability on decadal and longer timescales.

Changes in present and future circulation types frequency in northwest Iberian Peninsula.

PubMed

Lorenzo, María N; Ramos, Alexandre M; Taboada, Juan J; Gimeno, Luis

2011-01-21

The aim of the work described herein was to study projection scenarios in order to find changes in the synoptic variability of the northwest Iberian Peninsula in the 21st century. To this end, we investigated the changes in the frequency of the different circulation types computed for the study area using three different models used in the IPCC 4(th) assessment report. The circulation types were computed using the procedure known as Lamb circulation types. The control simulation for the late 20th century was evaluated objectively from the results obtained using data from the NCEP/NCAR reanalysis, as to evaluate the ability of the model to reproduce the present climate. We have compared not only seasonal mean sea level pressure fields but also the mean seasonal frequency of circulation types. The results for the end of the 21st century show a decrease in the frequency of cyclonic, W, and SW circulation types in the spring and summer months. This trend also appears in the autumn, with a concomitant increase in the anticyclonic types.

Changes in Present and Future Circulation Types Frequency in Northwest Iberian Peninsula

PubMed Central

Lorenzo, María N.; Ramos, Alexandre M.; Taboada, Juan J.; Gimeno, Luis

2011-01-01

The aim of the work described herein was to study projection scenarios in order to find changes in the synoptic variability of the northwest Iberian Peninsula in the 21st century. To this end, we investigated the changes in the frequency of the different circulation types computed for the study area using three different models used in the IPCC 4th assessment report. The circulation types were computed using the procedure known as Lamb circulation types. The control simulation for the late 20th century was evaluated objectively from the results obtained using data from the NCEP/NCAR reanalysis, as to evaluate the ability of the model to reproduce the present climate. We have compared not only seasonal mean sea level pressure fields but also the mean seasonal frequency of circulation types. The results for the end of the 21st century show a decrease in the frequency of cyclonic, W, and SW circulation types in the spring and summer months. This trend also appears in the autumn, with a concomitant increase in the anticyclonic types. PMID:21283703

Using the Gamma-Poisson Model to Predict Library Circulations.

ERIC Educational Resources Information Center

Burrell, Quentin L.

1990-01-01

Argues that the gamma mixture of Poisson processes, for all its perceived defects, can be used to make predictions regarding future library book circulations of a quality adequate for general management requirements. The use of the model is extensively illustrated with data from two academic libraries. (Nine references) (CLB)

Simulating the impact of the large-scale circulation on the 2-m temperature and precipitation climatology

EPA Science Inventory

The impact of the simulated large-scale atmospheric circulation on the regional climate is examined using the Weather Research and Forecasting (WRF) model as a regional climate model. The purpose is to understand the potential need for interior grid nudging for dynamical downscal...

An integrated coronary circulation teaching model.

PubMed

van Oostrom, Johannes H; Kentgens, S; Beneken, J E W; Gravenstein, J S

2006-08-01

We present in this paper a model of the coronary circulation. This model is integrated with a model of the systemic circulation, and contains models for oxygen supply and demand. Three compartments are created: one for the right ventricle, one for the epicardial segment of the left ventricle and one for the endo-cardial segment of the left ventricle. The model was implemented in the Java programming language and contains a visual representation of the left and right ventricles which beat in real time. Color shading is used to represent the partial pressure of oxygen in the segments. A multitude of model parameters can be changed to simulate different scenarios. The output of the model was characterized under different conditions and the results verified by clinicians. Educational models of human physiology can be very useful for a more in depth understanding of complete physiologic systems. The models must however have enough complexity, interaction with other systems, and realism to show the concepts being taught.

Asynchronous Glacial Chronologies in the Central Andes (15-40°S) and Paleoclimatic Implications

NASA Astrophysics Data System (ADS)

Zech, R.; Kull, C.; Kubik, P. W.; Veit, H.

2006-12-01

We have established glacial chronologies along a N-S transect over the Central Andes using 10Be surface exposure dating. Our results show that maximum glacial advances occurred asynchronously and reflect the varying influence and shifts of the major atmospheric circulation systems during the Late Quaternary: the tropical circulation in the north and the westerlies in the south. In Bolivia (three research areas in the Cordillera Real and the Cordillera Cochabamba, ~15°S) glacial advances could be dated to ~20 and 12 ka BP. This is in good agreement with published exposure age data from moraines in Bolivia and Peru (provided that all ages are calculated following the same scaling system). Accordingly, the maximum glaciation there probably occurred roughly synchronous to the temperature minimum of the global Last Glacial Maximum (LGM) and the lateglacial cold reversals. Strict correlation with neither the Younger Dryas in the northern hemisphere, nor the Antarctic Cold Reversal is possible due to the current systematic exposure age uncertainties (~10%). Glacier-Climate-Modelling corroborates the sensitivity of the reconstructed glaciers to temperature changes, rather than precipitation. On the contrary, there is good evidence for the dominant role of precipitation changes on the glacial chronologies in the lee of the Cordillera Occidental, i.e. on the Altiplano and further south. The pronounced lateglacial wet phase, which is well documented in lake transgression phases as far south as 28°S (-> tropical moisture source), seems to have caused glacial advances even at ~30°S. In two research areas in Chile at that latitude, we were able to date several lateglacial moraines. Besides, the maximum datable glaciation there occurred at ~30 ka BP. That is significantly earlier than the LGM (sensu strictu) and points to favourable climate conditions for glaciation at that time (particularly increased precipitation). We conclude that the westerlies were more intensive or shifted northward at ~30 ka BP. We have not yet been able to date LGM moraines as far south as ~40°, which would indicate the transition of precipitation- to temperature-sensitive glaciers. Instead, our preliminary exposure age chronology from Valle Rucachoroi (~39°S, Argentina) suggests that the maximum glaciation there occurred also at ~30 ka BP, but that the valleys became ice-free only by ~15 ka BP. Samples from moraines in the cirques are currently in progress and may document lateglacial re-advances.

Adaptation of a general circulation model to ocean dynamics

NASA Technical Reports Server (NTRS)

Turner, R. E.; Rees, T. H.; Woodbury, G. E.

1976-01-01

A primitive-variable general circulation model of the ocean was formulated in which fast external gravity waves are suppressed with rigid-lid surface constraint pressires which also provide a means for simulating the effects of large-scale free-surface topography. The surface pressure method is simpler to apply than the conventional stream function models, and the resulting model can be applied to both global ocean and limited region situations. Strengths and weaknesses of the model are also presented.

On a sparse pressure-flow rate condensation of rigid circulation models

PubMed Central

Schiavazzi, D. E.; Hsia, T. Y.; Marsden, A. L.

2015-01-01

Cardiovascular simulation has shown potential value in clinical decision-making, providing a framework to assess changes in hemodynamics produced by physiological and surgical alterations. State-of-the-art predictions are provided by deterministic multiscale numerical approaches coupling 3D finite element Navier Stokes simulations to lumped parameter circulation models governed by ODEs. Development of next-generation stochastic multiscale models whose parameters can be learned from available clinical data under uncertainty constitutes a research challenge made more difficult by the high computational cost typically associated with the solution of these models. We present a methodology for constructing reduced representations that condense the behavior of 3D anatomical models using outlet pressure-flow polynomial surrogates, based on multiscale model solutions spanning several heart cycles. Relevance vector machine regression is compared with maximum likelihood estimation, showing that sparse pressure/flow rate approximations offer superior performance in producing working surrogate models to be included in lumped circulation networks. Sensitivities of outlets flow rates are also quantified through a Sobol’ decomposition of their total variance encoded in the orthogonal polynomial expansion. Finally, we show that augmented lumped parameter models including the proposed surrogates accurately reproduce the response of multiscale models they were derived from. In particular, results are presented for models of the coronary circulation with closed loop boundary conditions and the abdominal aorta with open loop boundary conditions. PMID:26671219

Effect of Vortex Circulation on Injectant from a Single Film-Cooling Hole and a Row of Film-Cooling Holes in a Turbulent Boundary Layer. Part 1. Injection Beneath the Vortex Downwash

DTIC Science & Technology

1989-06-01

coefficients vortex circulation, symbols used in vorticity plots representing circulation values derived from different vortex core models injection...derived from different vortex core models dimensionless core size parameter: t wice the a verage core radius divided by t h e i n jection hole...Wall Heating, xjd=109.2, m=0.5, Single Injection Hole Vortex w, Temp. Difference Range (.5- 2.5) degree s 91. Local Temperature Distribution

Mixing parametrizations for ocean climate modelling

NASA Astrophysics Data System (ADS)

Gusev, Anatoly; Moshonkin, Sergey; Diansky, Nikolay; Zalesny, Vladimir

2016-04-01

The algorithm is presented of splitting the total evolutionary equations for the turbulence kinetic energy (TKE) and turbulence dissipation frequency (TDF), which is used to parameterize the viscosity and diffusion coefficients in ocean circulation models. The turbulence model equations are split into the stages of transport-diffusion and generation-dissipation. For the generation-dissipation stage, the following schemes are implemented: the explicit-implicit numerical scheme, analytical solution and the asymptotic behavior of the analytical solutions. The experiments were performed with different mixing parameterizations for the modelling of Arctic and the Atlantic climate decadal variability with the eddy-permitting circulation model INMOM (Institute of Numerical Mathematics Ocean Model) using vertical grid refinement in the zone of fully developed turbulence. The proposed model with the split equations for turbulence characteristics is similar to the contemporary differential turbulence models, concerning the physical formulations. At the same time, its algorithm has high enough computational efficiency. Parameterizations with using the split turbulence model make it possible to obtain more adequate structure of temperature and salinity at decadal timescales, compared to the simpler Pacanowski-Philander (PP) turbulence parameterization. Parameterizations with using analytical solution or numerical scheme at the generation-dissipation step of the turbulence model leads to better representation of ocean climate than the faster parameterization using the asymptotic behavior of the analytical solution. At the same time, the computational efficiency left almost unchanged relative to the simple PP parameterization. Usage of PP parametrization in the circulation model leads to realistic simulation of density and circulation with violation of T,S-relationships. This error is majorly avoided with using the proposed parameterizations containing the split turbulence model. The high sensitivity of the eddy-permitting circulation model to the definition of mixing is revealed, which is associated with significant changes of density fields in the upper baroclinic ocean layer over the total considered area. For instance, usage of the turbulence parameterization instead of PP algorithm leads to increasing circulation velocity in the Gulf Stream and North Atlantic Current, as well as the subpolar cyclonic gyre in the North Atlantic and Beaufort Gyre in the Arctic basin are reproduced more realistically. Consideration of the Prandtl number as a function of the Richardson number significantly increases the modelling quality. The research was supported by the Russian Foundation for Basic Research (grant № 16-05-00534) and the Council on the Russian Federation President Grants (grant № MK-3241.2015.5)

IAS Mesoscale Surface Circulation Observed Through Satellite Altimetry and its Influence in a Small Scale, Coastal Domain, Studied with a ROMS Model of the Cariaco Basin.

NASA Astrophysics Data System (ADS)

Alvera-Azcarate, A.; Barth, A.; Virmani, J. I.; Weisberg, R. H.

2007-05-01

The Intra-Americas Sea (IAS) surface circulation is characterized by large scale currents. The Caribbean current, which originates in the Lesser Antilles, travels westwards through the Caribbean Sea and eastern Mexico and passes through the Gulf of Mexico to finally form the Gulf Stream. This complex system of currents is also characterized by a high mesoscale variability, such as eddies and meanders. The objectives of this work are twofold: first, the multi-scale surface circulation of the IAS is described using satellite altimetry. The topographic influence of the different basins forming the IAS, the characteristic time and spatial scales, and the time variability of the surface circulation will be addressed. The second objective is to analyze the influence of this large scale circulation on a small scale coastal domain with a ROMS-based model of the Cariaco basin (Venezuela). Cariaco is a deep (1400 m), semi-enclosed basin connected to the open ocean by two shallow channels (Tortuga and Centinela Channels). Its connection with the open sea, and therefore the ventilation of the basin, occurs in the surface layers. The Cariaco ROMS model will be used to study the exchanges of mass, heat and salt through the channels. A 1/60 degree ROMS model nested in the global 1/12 degree HYCOM model from the Naval Research Laboratory will be used for this study. In addition, a series of observations (satellite altimetry and in situ temperature, salinity and velocity data), will be used to assess the influence of the Caribbean circulation on the basin.

The Southern Ocean's role in ocean circulation and climate transients

NASA Astrophysics Data System (ADS)

Thompson, A. F.; Stewart, A.; Hines, S.; Adkins, J. F.

2017-12-01

The ventilation of deep and intermediate density classes at the surface of the Southern Ocean impacts water mass modification and the air-sea exchange of heat and trace gases, which in turn influences the global overturning circulation and Earth's climate. Zonal variability occurs along the Antarctic Circumpolar Current and the Antarctic margins related to flow-topography interactions, variations in surface boundary conditions, and exchange with northern basins. Information about these zonal variations, and their impact on mass and tracer transport, are suppressed when the overturning is depicted as a two-dimensional (depth-latitude) streamfunction. Here we present an idealized, multi-basin, time-dependent circulation model that applies residual circulation theory in the Southern Ocean and allows for zonal water mass transfer between different ocean basins. This model efficiently determines the temporal evolution of the ocean's stratification, ventilation and overturning strength in response to perturbations in the external forcing. With this model we explore the dynamics that lead to transitions in the circulation structure between multiple, isolated cells and a three-dimensional, "figure-of-eight," circulation in which traditional upper and lower cells are interleaved. The transient model is also used to support a mechanistic explanation of the hemispheric asymmetry and phase lag associated with Dansgaard-Oeschger (DO) events during the last glacial period. In particular, the 200 year lag in southern hemisphere temperatures, following a perturbation in North Atlantic deep water formation, depends critically on the migration of Southern Ocean isopycnal outcropping in response to low-latitude stratification changes. Our results provide a self-consistent dynamical framework to explain various ocean overturning transitions that have occurred over the Earth's last 100,000 years, and motivate an exploration of these mechanisms in more sophisticated climate models.

Surrogate modeling of joint flood risk across coastal watersheds

NASA Astrophysics Data System (ADS)

Bass, Benjamin; Bedient, Philip

2018-03-01

This study discusses the development and performance of a rapid prediction system capable of representing the joint rainfall-runoff and storm surge flood response of tropical cyclones (TCs) for probabilistic risk analysis. Due to the computational demand required for accurately representing storm surge with the high-fidelity ADvanced CIRCulation (ADCIRC) hydrodynamic model and its coupling with additional numerical models to represent rainfall-runoff, a surrogate or statistical model was trained to represent the relationship between hurricane wind- and pressure-field characteristics and their peak joint flood response typically determined from physics based numerical models. This builds upon past studies that have only evaluated surrogate models for predicting peak surge, and provides the first system capable of probabilistically representing joint flood levels from TCs. The utility of this joint flood prediction system is then demonstrated by improving upon probabilistic TC flood risk products, which currently account for storm surge but do not take into account TC associated rainfall-runoff. Results demonstrate the source apportionment of rainfall-runoff versus storm surge and highlight that slight increases in flood risk levels may occur due to the interaction between rainfall-runoff and storm surge as compared to the Federal Emergency Management Association's (FEMAs) current practices.

Processes and mechanisms of persistent extreme precipitation events in East China

NASA Astrophysics Data System (ADS)

Zhai, Panmao; Chen, Yang

2014-11-01

This study mainly presents recent progresses on persistent extreme precipitation events (PEPEs) in East China. A definition focusing both persistence and extremity of daily precipitation is firstly proposed. An identification method for quasi-stationary regional PEPEs is then designed. By utilizing the identified PEPEs in East China, typical circulation configurations from the lower to the upper troposphere are confirmed, followed by investigations of synoptic precursors for key components with lead time of 1-2 weeks. Two characteristic circulation patterns responsible for PEPEs in East China are identified: a double blocking high type and a single blocking high type. They may account for occurrence of nearly 80% PEPEs during last 60 years. For double blocking high type, about two weeks prior to PEPEs, two blockings developed and progressed towards the Ural Mountains and the Sea of Okhotsk, respectively. A northwestward progressive anomalous anticyclone conveying abundant moisture and eastward-extended South Asia High favoring divergence can be detected about one week in advance. A dominant summertime teleconnection over East Asia, East Asia/ Pacific (EAP) pattern, is deemed as another typical regime inducing PEPEs in the East China. Key elements of the EAP pattern initiated westward movement since one week prior to PEPEs. Eastward energy dispersion and poleward energy dispersion contributed to early development and subsequent maintenance of this teleconnection pattern, respectively. These typical circulation patterns and significant precursors may offer local forecasters some useful clues in identifying and predicting such high-impact precipitation events about 1-2 weeks in advance.

Crystal digital droplet PCR for detection and quantification of circulating EGFR sensitizing and resistance mutations in advanced non-small cell lung cancer

PubMed Central

Madic, Jordan; Remon, Jordi; Honoré, Aurélie; Girard, Romain; Rouleau, Etienne; André, Barbara; Besse, Benjamin; Droniou, Magali; Lacroix, Ludovic

2017-01-01

Over the past years, targeted therapies using tyrosine kinase inhibitors (TKI) have led to an increase in progression-free survival and response rate for a subgroup of non-small cell lung cancer (NSCLC) patients harbouring specific gene abnormalities compared with chemotherapy. However long-lasting tumor regression is rarely achieved, due to the development of resistant tumoral subclones, which requires alternative therapeutic approaches. Molecular profile at progressive disease is a challenge for making adaptive treatment decisions. The aim of this study was to monitor EGFR-mutant tumors over time based on the quantity of mutant DNA circulating in plasma (ctDNA), comparing two different methods, Crystal™ Digital™ PCR and Massive Parallel Sequencing (MPS). In plasma circulating cell free DNA (cfDNA) of 61 advanced NSCLC patients we found an overall correlation of 78% between mutated allelic fraction measured by Crystal Digital PCR and MPS. 7 additional samples with sensitizing mutations and 4 additional samples with the resistance mutation were detected with Crystal Digital PCR, but not with MPS. Monitoring levels of both mutation types over time showed a correlation between levels and trends of mutated ctDNA detected and clinical assessment of disease for the 6 patients tested. In conclusion, Crystal Digital PCR exhibited good performance for monitoring mutational status in plasma cfDNA, and also appeared as better suited to the detection of known mutations than MPS in terms of features such as time to results. PMID:28829811

Dynamic chest radiography: flat-panel detector (FPD) based functional X-ray imaging.

PubMed

Tanaka, Rie

2016-07-01

Dynamic chest radiography is a flat-panel detector (FPD)-based functional X-ray imaging, which is performed as an additional examination in chest radiography. The large field of view (FOV) of FPDs permits real-time observation of the entire lungs and simultaneous right-and-left evaluation of diaphragm kinetics. Most importantly, dynamic chest radiography provides pulmonary ventilation and circulation findings as slight changes in pixel value even without the use of contrast media; the interpretation is challenging and crucial for a better understanding of pulmonary function. The basic concept was proposed in the 1980s; however, it was not realized until the 2010s because of technical limitations. Dynamic FPDs and advanced digital image processing played a key role for clinical application of dynamic chest radiography. Pulmonary ventilation and circulation can be quantified and visualized for the diagnosis of pulmonary diseases. Dynamic chest radiography can be deployed as a simple and rapid means of functional imaging in both routine and emergency medicine. Here, we focus on the evaluation of pulmonary ventilation and circulation. This review article describes the basic mechanism of imaging findings according to pulmonary/circulation physiology, followed by imaging procedures, analysis method, and diagnostic performance of dynamic chest radiography.

Recent advances in circulating tumor cells and cell-free DNA in metastatic prostate cancer: a review.

PubMed

Parimi, Sunil; Ko, Jenny J

2017-10-01

The treatment landscape of metastatic prostate cancer has changed dramatically over the past five years. As new discoveries are made and further novel therapies become available, there is a heightened urgency to develop biomarkers that can guide prognoses and predict therapy responses. Circulating tumor cells (CTCs) and cell-free circulating tumor DNA (ctDNA) in the blood have emerged as potential promising tumor avatars. Areas covered: In this review, we describe technological breakthroughs and clinical implementation of the CTCs and ctDNA. We also discuss the key challenges that must be overcome before circulating blood-based biomarkers can be universally adopted into the management of patients with metastatic prostate cancer. Expert commentary: Both CTCs and ctDNA have the potential to be incorporated into routine patient care, with increasing numbers of prospective trials incorporating them into clinical designs. CTCs and ctDNA will thus have an increasingly valuable role in augmenting our understanding of prostate cancer at a molecular level, aiding in prognostication of prostate cancer patients, acting as a surrogate for OS in clinical trials, and helping us prioritize our treatment selections by elucidating resistance mechanisms.

Effects of one's sex and sex hormones on sympathetic responses to chemoreflex activation.

PubMed

Usselman, Charlotte W; Steinback, Craig D; Shoemaker, J Kevin

2016-03-01

What is the topic of this review? This review summarizes sex-dependent differences in the sympathetic responses to chemoreflex activation, with a focus on the role of circulating sex hormones on the sympathetic outcomes. What advances does it highlight? The importance of circulating sex hormones for the regulation of sympathetic nerve activity in humans has only recently begun to be elucidated, and few studies have examined this effect during chemoreflex regulation. We review recent studies indicating that changes in circulating sex hormones are associated with alterations to chemoreflex-driven increases in sympathetic activity and highlight those areas which require further study. Sex-dependent differences in baseline sympathetic nerve activity are established, but little information exists on the influence of sex on sympathetic activation during chemoreflex stimulation. In this article, we review the evidence for the effect of sex on chemoreflex-driven increases in sympathetic nerve activity. We also review recent studies which indicate that changes in circulating sex hormones, as initiated by the menstrual cycle and hormonal contraceptive use, elicit notable changes in the muscle sympathetic activation during chemoreflex stimulation. © 2015 The Authors. Experimental Physiology © 2015 The Physiological Society.

Objective estimates of mantle 3He in the ocean and implications for constraining the deep ocean circulation

NASA Astrophysics Data System (ADS)

Holzer, Mark; DeVries, Timothy; Bianchi, Daniele; Newton, Robert; Schlosser, Peter; Winckler, Gisela

2017-01-01

Hydrothermal vents along the ocean's tectonic ridge systems inject superheated water and large amounts of dissolved metals that impact the deep ocean circulation and the oceanic cycling of trace metals. The hydrothermal fluid contains dissolved mantle helium that is enriched in 3He relative to the atmosphere, providing an isotopic tracer of the ocean's deep circulation and a marker of hydrothermal sources. This work investigates the potential for the 3He/4He isotope ratio to constrain the ocean's mantle 3He source and to provide constraints on the ocean's deep circulation. We use an ensemble of 11 data-assimilated steady-state ocean circulation models and a mantle helium source based on geographically varying sea-floor spreading rates. The global source distribution is partitioned into 6 regions, and the vertical profile and source amplitude of each region are varied independently to determine the optimal 3He source distribution that minimizes the mismatch between modeled and observed δ3He. In this way, we are able to fit the observed δ3He distribution to within a relative error of ∼15%, with a global 3He source that ranges from 640 to 850 mol yr-1, depending on circulation. The fit captures the vertical and interbasin gradients of the δ3He distribution very well and reproduces its jet-sheared saddle point in the deep equatorial Pacific. This demonstrates that the data-assimilated models have much greater fidelity to the deep ocean circulation than other coarse-resolution ocean models. Nonetheless, the modelled δ3He distributions still display some systematic biases, especially in the deep North Pacific where δ3He is overpredicted by our models, and in the southeastern tropical Pacific, where observed westward-spreading δ3He plumes are not well captured. Sources inferred by the data-assimilated transport with and without isopycnally aligned eddy diffusivity differ widely in the Southern Ocean, in spite of the ability to match the observed distributions of CFCs and radiocarbon for either eddy parameterization.

The effect of non-zero radial velocity on the impulse and circulation of starting jets

NASA Astrophysics Data System (ADS)

Krieg, Michael; Mohseni, Kamran

2011-11-01

Vortex ring formation dynamics are generally studied using two basic types of vortex generators. Piston cylinder vortex generators eject fluid through a long tube which ensures a purely axial jet; whereas, vortex ring generators which expel fluid through a flat plate with a circular orifice produce 2-D jets (non-zero radial velocity). At the nozzle exit plane of the orifice type vortex generator the radial component of velocity is linearly proportional to the radial distance from the axis of symmetry, reaching a maximum at the edge of the orifice with a magnitude around 10 % of the piston velocity (the ratio of the volume flux and the nozzle area). As the jet advances downstream the radial velocity quickly dissipates, and becomes purely axial less than a diameter away from the nozzle exit plane. The radial velocity gradient in the axial direction plays a key role in the rate at which circulation and impulse are ejected from the vortex generator. Though the radial component of velocity is small compared to the axial velocity, it has a significant effect on both the circulation and impulse of the starting jet because of this gradient. The extent of circulation and impulse enhancement is investigated through experimental DPIV data showing that the orifice device produces nearly double both circulation and energy (with identical piston velocity and stroke ratios).

Tropospheric jet response to Antarctic ozone depletion: An update with Chemistry-Climate Model Initiative (CCMI) models

NASA Astrophysics Data System (ADS)

Son, Seok-Woo; Han, Bo-Reum; Garfinkel, Chaim I.; Kim, Seo-Yeon; Park, Rokjin; Abraham, N. Luke; Akiyoshi, Hideharu; Archibald, Alexander T.; Butchart, N.; Chipperfield, Martyn P.; Dameris, Martin; Deushi, Makoto; Dhomse, Sandip S.; Hardiman, Steven C.; Jöckel, Patrick; Kinnison, Douglas; Michou, Martine; Morgenstern, Olaf; O’Connor, Fiona M.; Oman, Luke D.; Plummer, David A.; Pozzer, Andrea; Revell, Laura E.; Rozanov, Eugene; Stenke, Andrea; Stone, Kane; Tilmes, Simone; Yamashita, Yousuke; Zeng, Guang

2018-05-01

The Southern Hemisphere (SH) zonal-mean circulation change in response to Antarctic ozone depletion is re-visited by examining a set of the latest model simulations archived for the Chemistry-Climate Model Initiative (CCMI) project. All models reasonably well reproduce Antarctic ozone depletion in the late 20th century. The related SH-summer circulation changes, such as a poleward intensification of westerly jet and a poleward expansion of the Hadley cell, are also well captured. All experiments exhibit quantitatively the same multi-model mean trend, irrespective of whether the ocean is coupled or prescribed. Results are also quantitatively similar to those derived from the Coupled Model Intercomparison Project phase 5 (CMIP5) high-top model simulations in which the stratospheric ozone is mostly prescribed with monthly- and zonally-averaged values. These results suggest that the ozone-hole-induced SH-summer circulation changes are robust across the models irrespective of the specific chemistry-atmosphere-ocean coupling.

A simple biosphere model (SiB) for use within general circulation models

NASA Technical Reports Server (NTRS)

Sellers, P. J.; Mintz, Y.; Sud, Y. C.; Dalcher, A.

1986-01-01

A simple realistic biosphere model for calculating the transfer of energy, mass and momentum between the atmosphere and the vegetated surface of the earth has been developed for use in atmospheric general circulation models. The vegetation in each terrestrial model grid is represented by an upper level, representing the perennial canopy of trees and shrubs, and a lower level, representing the annual cover of grasses and other heraceous species. The vegetation morphology and the physical and physiological properties of the vegetation layers determine such properties as: the reflection, transmission, absorption and emission of direct and diffuse radiation; the infiltration, drainage, and storage of the residual rainfall in the soil; and the control over the stomatal functioning. The model, with prescribed vegetation parameters and soil interactive soil moisture, can be used for prediction of the atmospheric circulation and precipitaion fields for short periods of up to a few weeks.

On the validation of a code and a turbulence model appropriate to circulation control airfoils

NASA Technical Reports Server (NTRS)

Viegas, J. R.; Rubesin, M. W.; Maccormack, R. W.

1988-01-01

A computer code for calculating flow about a circulation control airfoil within a wind tunnel test section has been developed. This code is being validated for eventual use as an aid to design such airfoils. The concept of code validation being used is explained. The initial stages of the process have been accomplished. The present code has been applied to a low-subsonic, 2-D flow about a circulation control airfoil for which extensive data exist. Two basic turbulence models and variants thereof have been successfully introduced into the algorithm, the Baldwin-Lomax algebraic and the Jones-Launder two-equation models of turbulence. The variants include adding a history of the jet development for the algebraic model and adding streamwise curvature effects for both models. Numerical difficulties and difficulties in the validation process are discussed. Turbulence model and code improvements to proceed with the validation process are also discussed.

Simulation of the atmospheric thermal circulation of a martian volcano using a mesoscale numerical model.

PubMed

Rafkin, Scot C R; Sta Maria, Magdalena R V; Michaels, Timothy I

2002-10-17

Mesoscale (<100 km) atmospheric phenomena are ubiquitous on Mars, as revealed by Mars Orbiter Camera images. Numerical models provide an important means of investigating martian atmospheric dynamics, for which data availability is limited. But the resolution of general circulation models, which are traditionally used for such research, is not sufficient to resolve mesoscale phenomena. To provide better understanding of these relatively small-scale phenomena, mesoscale models have recently been introduced. Here we simulate the mesoscale spiral dust cloud observed over the caldera of the volcano Arsia Mons by using the Mars Regional Atmospheric Modelling System. Our simulation uses a hierarchy of nested models with grid sizes ranging from 240 km to 3 km, and reveals that the dust cloud is an indicator of a greater but optically thin thermal circulation that reaches heights of up to 30 km, and transports dust horizontally over thousands of kilometres.

Intercomparison and interpretation of climate feedback processes in 19 atmospheric general circulation models

NASA Technical Reports Server (NTRS)

Cess, R. D.; Potter, G. L.; Blanchet, J. P.; Boer, G. J.; Del Genio, A. D.

1990-01-01

The present study provides an intercomparison and interpretation of climate feedback processes in 19 atmospheric general circulation models. This intercomparison uses sea surface temperature change as a surrogate for climate change. The interpretation of cloud-climate interactions is given special attention. A roughly threefold variation in one measure of global climate sensitivity is found among the 19 models. The important conclusion is that most of this variation is attributable to differences in the models' depiction of cloud feedback, a result that emphasizes the need for improvements in the treatment of clouds in these models if they are ultimately to be used as reliable climate predictors. It is further emphazied that cloud feedback is the consequence of all interacting physical and dynamical processes in a general circulation model. The result of these processes is to produce changes in temperature, moisture distribution, and clouds which are integrated into the radiative response termed cloud feedback.

Integrated and spectral energetics of the GLAS general circulation model

NASA Technical Reports Server (NTRS)

Tenenbaum, J.

1981-01-01

Integrated and spectral error energetics of the Goddard Laboratory for Atmospheric Sciences (GLAS) general circulation model are compared with observations for periods in January 1975, 1976, and 1977. For two cases the model shows significant skill in predicting integrated energetics quantities out to two weeks, and for all three cases, the integrated monthly mean energetics show qualitative improvements over previous versions of the model in eddy kinetic energy and barotropic conversions. Fundamental difficulties remain with leakage of energy to the stratospheric level. General circulation model spectral energetics predictions are compared with the corresponding observational spectra on a day by day basis. Eddy kinetic energy can be correct while significant errors occur in the kinetic energy of wavenumber three. Single wavenumber dominance in eddy kinetic energy and the correlation of spectral kinetic and potential energy are demonstrated.

[Low-energy wideband electromagnetic radiation and manual therapy in the treatment of neurological manifestations of spinal osteochondrosis].

PubMed

Afoshin, S A; Gerasimenko, M Iu

2006-01-01

It is shown that the advanced technique of low-energy wideband electromagnetic radiation improves vascular tonicity and peripheral circulation while a modified technique of manual therapy facilitates movements in the affected part of the spine and reduces tonicity of the muscles involved in the pathological process.

SARS-CoV and Emergent Coronaviruses: Viral Determinants of Interspecies Transmission

PubMed Central

Bolles, Meagan; Donaldson, Eric; Baric, Ralph

2011-01-01

Most new emerging viruses are derived from strains circulating in zoonotic reservoirs. Coronaviruses, which had an established potential for cross-species transmission within domesticated animals, suddenly became relevant with the unexpected emergence of the highly pathogenic human SARS-CoV strain from zoonotic reservoirs in 2002. SARS-CoV infected approximately 8000 people worldwide before public health measures halted the epidemic. Supported by robust time-ordered sequence variation, structural biology, well-characterized patient pools, and biological data, the emergence of SARS-CoV represents one of the best studied natural models of viral disease emergence from zoonotic sources. This review article summarizes previous and more recent advances into the molecular and structural characteristics, with particular emphasis on host-receptor interactions, that drove this remarkable virus disease outbreak in human populations. PMID:22180768

Sexual dimorphism in ischemic stroke: lessons from the laboratory

PubMed Central

Manwani, Bharti; McCullough, Louise D

2011-01-01

Ischemic stroke is emerging as a major health problem for elderly women. Women have lower stroke incidence than men until an advanced age, when the epidemiology of ischemic stroke shifts and incidence rises dramatically in women. Experimental models of rodent stroke have replicated this clinical epidemiology, with exacerbated injury in older compared with young female rodents Many of the detrimental effects of aging on ischemic stroke outcome in females can be replicated by ovariectomy, suggesting that hormones such as estrogen play a neuroprotective role. However, emerging data suggest that the molecular mechanisms leading to ischemic cell death differ in the two sexes, and these effects may be independent of circulating hormone levels. This article highlights recent clinical and experimental literature on sex differences in stroke outcomes and mechanisms. PMID:21612353