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Sample records for advanced three-dimensional computational

  1. Advances in three-dimensional coronary imaging and computational fluid dynamics: is virtual fractional flow reserve more than just a pretty picture?

    PubMed

    Poon, Eric K W; Hayat, Umair; Thondapu, Vikas; Ooi, Andrew S H; Ul Haq, Muhammad Asrar; Moore, Stephen; Foin, Nicolas; Tu, Shengxian; Chin, Cheng; Monty, Jason P; Marusic, Ivan; Barlis, Peter

    2015-08-01

    Percutaneous coronary intervention (PCI) has shown a high success rate in the treatment of coronary artery disease. The decision to perform PCI often relies on the cardiologist's visual interpretation of coronary lesions during angiography. This has inherent limitations, particularly due to the low resolution and two-dimensional nature of angiography. State-of-the-art modalities such as three-dimensional quantitative coronary angiography, optical coherence tomography and invasive fractional flow reserve (FFR) may improve clinicians' understanding of both the anatomical and physiological importance of coronary lesions. While invasive FFR is the gold standard technique for assessment of the haemodynamic significance of coronary lesions, recent studies have explored a surrogate for FFR derived solely from three-dimensional reconstruction of the invasive angiogram, and therefore eliminating need for a pressure wire. Utilizing advanced computational fluid dynamics research, this virtual fractional flow reserve (vFFR) has demonstrated reasonable correlation with invasive measurements and remains an intense area of ongoing study. However, at present, several limitations and computational fluid dynamic assumptions may preclude vFFR from widespread clinical use. This review demonstrates the tight integration of advanced three-dimensional imaging techniques and vFFR in assessing coronary artery disease, reviews the advantages and disadvantages of such techniques and attempts to provide a glimpse of how such advances may benefit future clinical decision-making during PCI. PMID:26247271

  2. Advanced Three-Dimensional Display System

    NASA Technical Reports Server (NTRS)

    Geng, Jason

    2005-01-01

    A desktop-scale, computer-controlled display system, initially developed for NASA and now known as the VolumeViewer(TradeMark), generates three-dimensional (3D) images of 3D objects in a display volume. This system differs fundamentally from stereoscopic and holographic display systems: The images generated by this system are truly 3D in that they can be viewed from almost any angle, without the aid of special eyeglasses. It is possible to walk around the system while gazing at its display volume to see a displayed object from a changing perspective, and multiple observers standing at different positions around the display can view the object simultaneously from their individual perspectives, as though the displayed object were a real 3D object. At the time of writing this article, only partial information on the design and principle of operation of the system was available. It is known that the system includes a high-speed, silicon-backplane, ferroelectric-liquid-crystal spatial light modulator (SLM), multiple high-power lasers for projecting images in multiple colors, a rotating helix that serves as a moving screen for displaying voxels [volume cells or volume elements, in analogy to pixels (picture cells or picture elements) in two-dimensional (2D) images], and a host computer. The rotating helix and its motor drive are the only moving parts. Under control by the host computer, a stream of 2D image patterns is generated on the SLM and projected through optics onto the surface of the rotating helix. The system utilizes a parallel pixel/voxel-addressing scheme: All the pixels of the 2D pattern on the SLM are addressed simultaneously by laser beams. This parallel addressing scheme overcomes the difficulty of achieving both high resolution and a high frame rate in a raster scanning or serial addressing scheme. It has been reported that the structure of the system is simple and easy to build, that the optical design and alignment are not difficult, and that the

  3. Advances in three-dimensional diagnostic radiology.

    PubMed

    ter Haar Romeny, B M; Zuiderveld, K J; Van Waes, P F; Van Walsum, T; Van Der Weijden, R; Weickert, J; Stokking, R; Wink, O; Kalitzin, S; Maintz, T; Zonneveld, F; Viergever, M A

    1998-10-01

    The maturity of current 3D rendering software in combination with recent developments in computer vision techniques enable an exciting range of applications for the visualisation, measurement and interactive manipulation of volumetric data, relevant both for diagnostic imaging and for anatomy. This paper reviews recent work in this area from the Image Sciences Institute at Utrecht University. The processes that yield a useful visual presentation are sequential. After acquisition and before any visualisation, an essential step is to prepare the data properly: this field is known as 'image processing' or 'computer vision' in analogy with the processing in human vision. Examples will be discussed of modern image enhancement and denoising techniques, and the complex process of automatically finding the objects or regions of interest, i.e. segmentation. One of the newer and promising methodologies for image analysis is based on a mathematical analysis of the human (cortical) visual processing: multiscale image analysis. After preprocessing the 3D rendering can be acquired by simulating the 'ray casting' in the computer. New possibilities are presented, such as the integrated visualisation in one image of (accurately registered) datasets of the same patient acquired in different modality scanners. Other examples include colour coding of functional data such as SPECT brain perfusion or functional magnetic resonance (MR) data and even metric data such as skull thickness on the rendered 3D anatomy from MR or computed tomography (CT). Optimal use and perception of 3D visualisation in radiology requires fast display and truly interactive manipulation facilities. Modern and increasingly cheaper workstations ( < $10000) allow this to be a reality. It is now possible to manipulate 3D images of 256 at 15 frames per second interactively, placing virtual reality within reach. The possibilities of modern workstations become increasingly more sophisticated and versatile. Examples

  4. Three-dimensional registration of synchrotron radiation-based micro-computed tomography images with advanced laboratory micro-computed tomography data from murine kidney casts

    NASA Astrophysics Data System (ADS)

    Thalmann, Peter; Hieber, Simone E.; Schulz, Georg; Deyhle, Hans; Khimchenko, Anna; Kurtcuoglu, Vartan; Olgac, Ufuk; Marmaras, Anastasios; Kuo, Willy; Meyer, Eric P.; Beckmann, Felix; Herzen, Julia; Ehrbar, Stefanie; Müller, Bert

    2014-09-01

    Malfunction of oxygen regulation in kidney and liver may lead to the pathogenesis of chronic diseases. The underlying mechanisms are poorly understood. In kidney, it is hypothesized that renal gas shunting from arteries to veins eliminates excess oxygen. Such shunting is highly dependent on the structure of the renal vascular network. The vascular tree has so far not been quantified under maintenance of its connectivity as three-dimensional imaging of the vessel tree down to the smallest capillaries, which in mouse model are smaller than 5 μm in diameter, is a challenging task. An established protocol uses corrosion casts and applies synchrotron radiation-based micro-computed tomography (SRμCT), which provides the desired spatial resolution with the necessary contrast. However, SRμCT is expensive and beamtime access is limited. We show here that measurements with a phoenix nanotomrm (General Electric, Wunstorf, Germany) can provide comparable results to those obtained with SRμCT, except for regions with small vessel structures, where the signal-to-noise level was significantly reduced. For this purpose the nanotom®m measurement was compared with its corresponding measurement acquired at the beamline P05 at PETRA III at DESY, Hamburg, Germany.

  5. Three-Dimensional Computational Fluid Dynamics

    SciTech Connect

    Haworth, D.C.; O'Rourke, P.J.; Ranganathan, R.

    1998-09-01

    Computational fluid dynamics (CFD) is one discipline falling under the broad heading of computer-aided engineering (CAE). CAE, together with computer-aided design (CAD) and computer-aided manufacturing (CAM), comprise a mathematical-based approach to engineering product and process design, analysis and fabrication. In this overview of CFD for the design engineer, our purposes are three-fold: (1) to define the scope of CFD and motivate its utility for engineering, (2) to provide a basic technical foundation for CFD, and (3) to convey how CFD is incorporated into engineering product and process design.

  6. Three-dimensional cardiac computational modelling: methods, features and applications.

    PubMed

    Lopez-Perez, Alejandro; Sebastian, Rafael; Ferrero, Jose M

    2015-01-01

    The combination of computational models and biophysical simulations can help to interpret an array of experimental data and contribute to the understanding, diagnosis and treatment of complex diseases such as cardiac arrhythmias. For this reason, three-dimensional (3D) cardiac computational modelling is currently a rising field of research. The advance of medical imaging technology over the last decades has allowed the evolution from generic to patient-specific 3D cardiac models that faithfully represent the anatomy and different cardiac features of a given alive subject. Here we analyse sixty representative 3D cardiac computational models developed and published during the last fifty years, describing their information sources, features, development methods and online availability. This paper also reviews the necessary components to build a 3D computational model of the heart aimed at biophysical simulation, paying especial attention to cardiac electrophysiology (EP), and the existing approaches to incorporate those components. We assess the challenges associated to the different steps of the building process, from the processing of raw clinical or biological data to the final application, including image segmentation, inclusion of substructures and meshing among others. We briefly outline the personalisation approaches that are currently available in 3D cardiac computational modelling. Finally, we present examples of several specific applications, mainly related to cardiac EP simulation and model-based image analysis, showing the potential usefulness of 3D cardiac computational modelling into clinical environments as a tool to aid in the prevention, diagnosis and treatment of cardiac diseases. PMID:25928297

  7. Three-dimensional viscous design methodology for advanced technology aircraft supersonic inlet systems

    NASA Technical Reports Server (NTRS)

    Anderson, B. H.

    1983-01-01

    A broad program to develop advanced, reliable, and user oriented three-dimensional viscous design techniques for supersonic inlet systems, and encourage their transfer into the general user community is discussed. Features of the program include: (1) develop effective methods of computing three-dimensional flows within a zonal modeling methodology; (2) ensure reasonable agreement between said analysis and selective sets of benchmark validation data; (3) develop user orientation into said analysis; and (4) explore and develop advanced numerical methodology.

  8. High-definition three-dimensional television disparity map computation

    NASA Astrophysics Data System (ADS)

    Chammem, Afef; Mitrea, Mihai; Prêteux, Françoise

    2012-10-01

    By reconsidering some two-dimensional video inherited approaches and by adapting them to the stereoscopic video content and to the human visual system peculiarities, a new disparity map is designed. First, the inner relation between the left and the right views is modeled by some weights discriminating between the horizontal and vertical disparities. Second, the block matching operation is achieved by considering a visual related measure (normalized cross correlation) instead of the traditional pixel differences (mean squared error or sum of absolute differences). The advanced three-dimensional (3-D) video-new three step search (3DV-NTSS) disparity map (3-D Video-New Three Step Search) is benchmarked against two state-of-the-art algorithms, namely NTSS and full-search MPEG (FS-MPEG), by successively considering two corpora. The first corpus was organized during the 3DLive French national project and regroups 20 min of stereoscopic video sequences. The second one, with similar size, is provided by the MPEG community. The experimental results demonstrate the effectiveness of 3DV-NTSS in both reconstructed image quality (average gains between 3% and 7% in both PSNR and structural similarity, with a singular exception) and computational cost (search operation number reduced by average factors between 1.3 and 13). The 3DV-NTSS was finally validated by designing a watermarking method for high definition 3-D TV content protection.

  9. Three-dimensional surface reconstruction for industrial computed tomography

    NASA Technical Reports Server (NTRS)

    Vannier, M. W.; Knapp, R. H.; Gayou, D. E.; Sammon, N. P.; Butterfield, R. L.; Larson, J. W.

    1985-01-01

    Modern high resolution medical computed tomography (CT) scanners can produce geometrically accurate sectional images of many types of industrial objects. Computer software has been developed to convert serial CT scans into a three-dimensional surface form, suitable for display on the scanner itself. This software, originally developed for imaging the skull, has been adapted for application to industrial CT scanning, where serial CT scans thrrough an object of interest may be reconstructed to demonstrate spatial relationships in three dimensions that cannot be easily understood using the original slices. The methods of three-dimensional reconstruction and solid modeling are reviewed, and reconstruction in three dimensions from CT scans through familiar objects is demonstrated.

  10. Three dimensional flow computations in a turbine scroll

    NASA Technical Reports Server (NTRS)

    Hamed, A.; Ghantous, C. A.

    1982-01-01

    The compressible three dimensional inviscid flow in the scroll and vaneless nozzle of radial inflow turbines is analyzed. A FORTRAN computer program for the numerical solution of this complex flow field using the finite element method is presented. The program input consists of the mass flow rate and stagnation conditions at the scroll inlet and of the finite element discretization parameters and nodal coordinates. The output includes the pressure, Mach number and velocity magnitude and direction at all the nodal points.

  11. Three-dimensional viscous design methodology for advanced technology aircraft supersonic inlet systems

    NASA Technical Reports Server (NTRS)

    Anderson, B. H.

    1984-01-01

    A broad program to develop advanced, reliable, and user oriented three-dimensional viscous design techniques for supersonic inlet systems, and encourage their transfer into the general user community is discussed. Features of the program include: (1) develop effective methods of computing three-dimensional flows within a zonal modeling methodology; (2) ensure reasonable agreement between said analysis and selective sets of benchmark validation data; (3) develop user orientation into said analysis; and (4) explore and develop advanced numerical methodology. Previously announced in STAR as N84-13190

  12. Three-Dimensional Computer Aided Design of a Vertical Winnower

    NASA Astrophysics Data System (ADS)

    Bao, Yumei; Lin, Saijia; Weng, Lijie

    The research states home and abroad of the winnowing technology and winnowers are reviewed in brief. For the air duct, the core component of the winnower, the relevant technical parameters in the winnowing process are calculated based on the winnowing principle. The three-dimensional computer aided design (3D-CAD) software Solidworks is applied. The designed vertical winnower is able to separate different raw materials by adjusting the air speed and has been put into practical production to separate the Chinese traditional medicine with high separating effect.

  13. Three-dimensional volumetric object reconstruction using computational integral imaging.

    PubMed

    Hong, Seung-Hyun; Jang, Ju-Seog; Javidi, Bahram

    2004-02-01

    We propose a three-dimensional (3D) imaging technique that can sense a 3D scene and computationally reconstruct it as a 3D volumetric image. Sensing of the 3D scene is carried out by obtaining elemental images optically using a pickup microlens array and a detector array. Reconstruction of volume pixels of the scene is accomplished by computationally simulating optical reconstruction according to ray optics. The entire pixels of the recorded elemental images contribute to volumetric reconstruction of the 3D scene. Image display planes at arbitrary distances from the display microlens array are computed and reconstructed by back propagating the elemental images through a computer synthesized pinhole array based on ray optics. We present experimental results of 3D image sensing and volume pixel reconstruction to test and verify the performance of the algorithm and the imaging system. The volume pixel values can be used for 3D image surface reconstruction.

  14. Three-dimensional geospatial information service based on cloud computing

    NASA Astrophysics Data System (ADS)

    Zhai, Xi; Yue, Peng; Jiang, Liangcun; Wang, Linnan

    2014-01-01

    Cloud computing technologies can support high-performance geospatial services in various domains, such as smart city and agriculture. Apache Hadoop, an open-source software framework, can be used to build a cloud environment on commodity clusters for storage and large-scale processing of data sets. The Open Geospatial Consortium (OGC) Web 3-D Service (W3DS) is a portrayal service for three-dimensional (3-D) geospatial data. Its performance could be improved by cloud computing technologies. This paper investigates how OGC W3DS could be developed in a cloud computing environment. It adopts the Apache Hadoop as the framework to provide a cloud implementation. The design and implementation of the 3-D geospatial information cloud service is presented. The performance evaluation is performed over data retrieval tests running in a cloud platform built by Hadoop clusters. The evaluation results provide a valuable reference on providing high-performance 3-D geospatial information cloud services.

  15. New advances in three-dimensional controlled-sourceelectromagnetic inversion

    SciTech Connect

    Commer, Michael; Newman, Gregory A.

    2007-05-19

    New techniques for improving both the computational andimaging performance of the three dimensional (3D) electromagnetic inverseproblem are presented. A non-linear conjugate gradient algorithm is theframework of the inversion scheme. Full wave equation modelling forcontrolled sources is utilized for data simulation along with anefficient gradient computation approach for the model update. Improvingthe modelling efficiency of the 3D finite difference method involves theseparation of the potentially large modelling mesh, defining the set ofmodel parameters, from the computational finite difference meshes usedfor field simulation. Grid spacings and thus overall grid sizes can bereduced and optimized according to source frequencies and source-receiveroffsets of a given input data set. Further computational efficiency isobtained by combining different levels of parallelization. While theparallel scheme allows for an arbitrarily large number of parallel tasks,the relative amount of message passing is kept constant. Imageenhancement is achieved by model parameter transformation functions,which enforce bounded conductivity parameters and thus prevent parameterovershoots. Further, a remedy for treating distorted data within theinversion process is presented. Data distortions simulated here includepositioning errors and a highly conductive overburden, hiding the desiredtarget signal. The methods are demonstrated using both synthetic andfield data.

  16. Topological analysis of computed three-dimensional viscous flow fields

    NASA Technical Reports Server (NTRS)

    Deiwert, G. S.

    1982-01-01

    Computed solutions of the time-dependent, Reynolds-averaged Navier-Stokes equations for three dimensional flows having thin shear layers are analyzed using topological concepts. Specific examples include the transonic flow over a body of revolution with conical afterbody at moderate angles of incidence to the free stream. Experimental flow-visualization techniques are simulated graphically to visualize the computed flow. Scalar and vector fluid dynamics properties such as pressure, shear stress, and vorticity on the body surface are presented as topological maps, and their relationship to one another in terms of orientation and singular points is discussed. The extrapolation from these surface topologies toward the understanding of external flow-field behavior is and demonstrated.

  17. A three-dimensional magnetostatics computer code for insertion devices.

    PubMed

    Chubar, O; Elleaume, P; Chavanne, J

    1998-05-01

    RADIA is a three-dimensional magnetostatics computer code optimized for the design of undulators and wigglers. It solves boundary magnetostatics problems with magnetized and current-carrying volumes using the boundary integral approach. The magnetized volumes can be arbitrary polyhedrons with non-linear (iron) or linear anisotropic (permanent magnet) characteristics. The current-carrying elements can be straight or curved blocks with rectangular cross sections. Boundary conditions are simulated by the technique of mirroring. Analytical formulae used for the computation of the field produced by a magnetized volume of a polyhedron shape are detailed. The RADIA code is written in object-oriented C++ and interfaced to Mathematica [Mathematica is a registered trademark of Wolfram Research, Inc.]. The code outperforms currently available finite-element packages with respect to the CPU time of the solver and accuracy of the field integral estimations. An application of the code to the case of a wedge-pole undulator is presented.

  18. Advanced three-dimensional Eulerian hydrodynamic algorithm development

    SciTech Connect

    Rider, W.J.; Kothe, D.B.; Mosso, S.

    1998-11-01

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The purpose of this project is to investigate, implement, and evaluate algorithms that have high potential for improving the robustness, fidelity and accuracy of three-dimensional Eulerian hydrodynamic simulations. Eulerian computations are necessary to simulate a number of important physical phenomena ranging from the molding process for metal parts to nuclear weapons safety issues to astrophysical phenomena such as that associated with a Type 2 supernovae. A number of algorithmic issues were explored in the course of this research including interface/volume tracking, surface physics integration, high resolution integration techniques, multilevel iterative methods, multimaterial hydrodynamics and coupling radiation with hydrodynamics. This project combines core strengths of several Laboratory divisions. The project has high institutional benefit given the renewed emphasis on numerical simulations in Science-Based Stockpile Stewardship and the Accelerated Strategic Computing Initiative and LANL`s tactical goals related to high performance computing and simulation.

  19. THERM: A three-dimensional transient heat conduction computer program

    SciTech Connect

    Cook, W.A.

    1991-10-01

    THERM is a three-dimensional finite-element computer program for solving transient heat conduction problems. This report presents the techniques used to develop THERM. The theory described consists of a governing equation, boundary conditions, and an equivalent variational principle. The matrix equations used in THERM are derived using both vector and tensor analysis. These equations used finite-element approximations for the geometry and a finite-difference approximation for the time. THERM has finite-element formulations using both Cartesian or cylindrical coordinates. Several example problems are included to demonstrate that the THERM formulations are correct and that THERM can be used to solve meaningful problems. 7 refs., 4 figs., 6 tabs.

  20. Three Dimensional Display Of Tumors Via Computed Tomography

    NASA Astrophysics Data System (ADS)

    Smathers, Ralph L.

    1985-09-01

    Computed tomography is widely utilized for the detection and staging of neoplasm. Typical chest, abdomen or pelvis CT scans may produce 10 to 20 transverse slices for each region. The mental reconstruction of the three dimensional anatomy from these transverse sections can be done by a physician who has had training in the analysis and interpretation of cross sectional anatomy and pathology. This mental reconstruction, however, may take years to develop into an efficient tool. With the 3-D reconstructions used in this study, diagnostic information concerning the location, shape and spread of tumor masses can be presented in a simple, intuitive 3-dimensional display. This technique has been found to be useful for improving communication between diagnostic radiologists and consulting physicians.

  1. Advancing three-dimensional MEMS by complimentary laser micro manufacturing

    NASA Astrophysics Data System (ADS)

    Palmer, Jeremy A.; Williams, John D.; Lemp, Tom; Lehecka, Tom M.; Medina, Francisco; Wicker, Ryan B.

    2006-01-01

    This paper describes improvements that enable engineers to create three-dimensional MEMS in a variety of materials. It also provides a means for selectively adding three-dimensional, high aspect ratio features to pre-existing PMMA micro molds for subsequent LIGA processing. This complimentary method involves in situ construction of three-dimensional micro molds in a stand-alone configuration or directly adjacent to features formed by x-ray lithography. Three-dimensional micro molds are created by micro stereolithography (MSL), an additive rapid prototyping technology. Alternatively, three-dimensional features may be added by direct femtosecond laser micro machining. Parameters for optimal femtosecond laser micro machining of PMMA at 800 nanometers are presented. The technical discussion also includes strategies for enhancements in the context of material selection and post-process surface finish. This approach may lead to practical, cost-effective 3-D MEMS with the surface finish and throughput advantages of x-ray lithography. Accurate three-dimensional metal microstructures are demonstrated. Challenges remain in process planning for micro stereolithography and development of buried features following femtosecond laser micro machining.

  2. Computations of Complex Three-Dimensional Turbulent Free Jets

    NASA Technical Reports Server (NTRS)

    Wilson, Robert V.; Demuren, Ayodeji O.

    1997-01-01

    Three-dimensional, incompressible turbulent jets with rectangular and elliptical cross-sections are simulated with a finite-difference numerical method. The full Navier- Stokes equations are solved at low Reynolds numbers, whereas at high Reynolds numbers filtered forms of the equations are solved along with a sub-grid scale model to approximate the effects of the unresolved scales. A 2-N storage, third-order Runge-Kutta scheme is used for temporary discretization and a fourth-order compact scheme is used for spatial discretization. Although such methods are widely used in the simulation of compressible flows, the lack of an evolution equation for pressure or density presents particular difficulty in incompressible flows. The pressure-velocity coupling must be established indirectly. It is achieved, in this study, through a Poisson equation which is solved by a compact scheme of the same order of accuracy. The numerical formulation is validated and the dispersion and dissipation errors are documented by the solution of a wide range of benchmark problems. Three-dimensional computations are performed for different inlet conditions which model the naturally developing and forced jets. The experimentally observed phenomenon of axis-switching is captured in the numerical simulation, and it is confirmed through flow visualization that this is based on self-induction of the vorticity field. Statistical quantities such as mean velocity, mean pressure, two-point velocity spatial correlations and Reynolds stresses are presented. Detailed budgets of the mean momentum and Reynolds stresses are presented. Detailed budgets of the mean momentum and Reynolds stress equations are presented to aid in the turbulence modeling of complex jets. Simulations of circular jets are used to quantify the effect of the non-uniform curvature of the non-circular jets.

  3. Three-dimensional computer modeling of hydrogen injection and combustion

    SciTech Connect

    Johnson, N.L.; Amsden, A.A.; Naber, J.D.; Siebers, D.L.

    1995-02-01

    The hydrodynamics of hydrogen gas injection into a fixed-volume combustion chamber is analyzed and simulated using KIVA-3, a three-dimensional, reactive flow computer code. Comparisons of the simulation results are made to data obtained at the Combustion Research Facility at Sandia National Laboratory-California (SNL-CA). Simulation of the gas injection problem is found to be of comparable difficulty as the liquid fuel injection in diesel engines. The primary challenge is the large change of length scale from the flow of gas in the orifice to the penetration in the combustion chamber. In the current experiments, the change of length scale is about 4,000. A reduction of the full problem is developed that reduces the change in length scale in the simulation to about 400, with a comparable improvement in computational times. Comparisons of the simulation to the experimental data shows good agreement in the penetration history and pressure rise in the combustion chamber. At late times the comparison is sensitive to the method of determination of the penetration in the simulations. In a comparison of the combustion modeling of methane and hydrogen, hydrogen combustion is more difficult to model, and currently available kinetic models fail to predict the observed autoignition delay at these conditions.

  4. True Three-Dimensional Display Of Computer Data

    NASA Astrophysics Data System (ADS)

    Stover, Hank

    1983-04-01

    The display of data in three dimensions overcomes the ambiguity often found in two dimensional displays. It allows a truly objective examination of the display data while two-dimensional displays require a subjective interpretation of what might exist in the Z direction. SpaceGraph allows the display of data in a volume filling manner. The data can occupy a volume of 20 x 25 x 30 centimeters. The display volume is generated by observing the reflection of a CRT in a circular mirror. This mirror is flexed about a rubber hinge located on a concentric circle several inches from the edge. By exciting this assembly with a hi-fi woofer, the mirror is caused to vibrate and takes on concave and convex optical shapes thus varying the focal length. This varying focal length causes the image of the CRT to sweep out apparent distance in Z of about 30 centimeters. By plotting points on the CRT in X and Y, these points permit us to draw vectors which can describe a wide variety of three-dimensional objects, such as mechanical parts, molecules, mechanical subassemblies or total assemblies such as aircraft and ships. In the vector mode, SpaceGraph provides 23 meters of vectors which can appear in as many segments as required by the object being displayed. The three-dimensional display can also be used in a second mode which we will call the image mode. In this mode, X and Y are controlled to generate a raster much like one generated in a conventional home TV. While the raster is being swept, brightness is varied to provide an image in gray shades. As this process takes place, the Z is continuously swept by the mirror as in the vector mode and a volume filling image is created. This mode appears to be of particular interest to seismologists and in computer aided tomography. Other applications or views of science which appear promising for 3-D display are computer-aided design, air traffic control, ultra sound analysis and anti-submarine warfare.

  5. [Simulation of thoracoscopic esophagectomy by three-dimensional computed tomography].

    PubMed

    Ichikawa, Hirofumi

    2007-07-01

    The virtual operative field of thoracoscopic surgery for esophageal cancer was created by three-dimensional (3D) computed tomography (CT) imaging. Major vessels, bone, trachea, bronchi, lung, esophagus, lymph nodes and broncial arteries were constructed by a Zio M900 workstation from multidetector-row CT scanning data. The mediastinal lymph nodes and bilateral bronchial arteries were drawn by a free-hand tool. The static images and fry-through movies by a virtual endoscopy mode were useful for simulation of the endoscopic surgery, which is usually performed in very limited viewing. The location of lymph nodes and bronchial arteries in relation to the adjacent anatomical structures was realized by this virtual vision. The bronchial arteries should be preserved to avoid tracheobronchial ischemia, especially in case of salvage surgery after definitive chemoradiotherapy. The left bronchial arteries had many anatomical variations, so that 3D CT images were helpful to identify and to preserve the left bronchial arteries. In conclusion, the simulation of thoracoscopic esophagectomy by 3D CT is thought to contribute to safty and precise navigation for this kind of surgery. PMID:17763681

  6. A Three-Dimensional Computational Model of Collagen Network Mechanics

    PubMed Central

    Lee, Byoungkoo; Zhou, Xin; Riching, Kristin; Eliceiri, Kevin W.; Keely, Patricia J.; Guelcher, Scott A.; Weaver, Alissa M.; Jiang, Yi

    2014-01-01

    Extracellular matrix (ECM) strongly influences cellular behaviors, including cell proliferation, adhesion, and particularly migration. In cancer, the rigidity of the stromal collagen environment is thought to control tumor aggressiveness, and collagen alignment has been linked to tumor cell invasion. While the mechanical properties of collagen at both the single fiber scale and the bulk gel scale are quite well studied, how the fiber network responds to local stress or deformation, both structurally and mechanically, is poorly understood. This intermediate scale knowledge is important to understanding cell-ECM interactions and is the focus of this study. We have developed a three-dimensional elastic collagen fiber network model (bead-and-spring model) and studied fiber network behaviors for various biophysical conditions: collagen density, crosslinker strength, crosslinker density, and fiber orientation (random vs. prealigned). We found the best-fit crosslinker parameter values using shear simulation tests in a small strain region. Using this calibrated collagen model, we simulated both shear and tensile tests in a large linear strain region for different network geometry conditions. The results suggest that network geometry is a key determinant of the mechanical properties of the fiber network. We further demonstrated how the fiber network structure and mechanics evolves with a local formation, mimicking the effect of pulling by a pseudopod during cell migration. Our computational fiber network model is a step toward a full biomechanical model of cellular behaviors in various ECM conditions. PMID:25386649

  7. True Three-Dimensional Display Of Computer Generated Images

    NASA Astrophysics Data System (ADS)

    Stover, Hank; Fletcher, John

    1983-12-01

    The display of data in three dimensions overcomes the ambiguity often found in two dimensional displays. A truly objective examination of the display data is allowed while two-dimensional displays require a subjective interpretation of what might exist in the Z direction. Data can occupy a volume of 20 X 25 X 30 centimeters since SpaceGraph allows the display of data in a volume filling manner. The display volume is generated by observing the reflection of a CRT in a circular mirror. The mirror is flexed about a rubber hinge located on a concentric circle several inches from the edge. By exciting this assembly with a hi-fi woofer, the mirror is caused to vibrate and takes on concave and convex optical shapes thus varying the focal length. The varying focal length causes the image of the CRT to sweep out apparent distance in Z of about 30 centimeters. By plotting points on the CRT in X and Y, these points permit us to draw vectors which can describe a wide variety of three-dimensional objects, such as molecules, mechanical subassemblies or total assemblies such as aircraft and ships. In the vector mode, SpaceGraph provides 23 meters of vectors which can appear in as many segments as required by the object being displayed. The three-dimensional display can also be used in a second mode which can be called the image mode. In this mode, X and Y are controlled to generate a raster much like one generated in a conventional home TV. While the raster is being swept, brightness is varied to provide an image in gray shades. As this process takes place, the Z is continuously swept by the mirror as in the vector mode and a volume filling image is created. This mode appears to be of particular interest in computer-aided tomography and to seismologists. Computeraided design, ultra sound analysis, anti-submarine warfare and air traffic control are other applications or views of science which appear promising for 3-D displays.

  8. Three-dimensional optical computed-tomography microscope

    NASA Astrophysics Data System (ADS)

    Chamgoulov, Ravil; Lane, Pierre; MacAulay, Calum

    2005-03-01

    We present our recent results on the development of three-dimensional (3-D) optical computed- tomography microscope. The instrument is a novel imaging device for the 3-D visualization and quantitative analysis of absorption-stained biological samples. The first instrument developed by our group at the BC Cancer Research Centre used a digital micromirror device (DMD) as a spatial light modulator to control the angles of illumination. This new embodiment employs an optical scanner instead of the DMD. The optical scanner is placed in the illumination path of the microscope system, conjugate to the field plane. The optical system includes also two high numerical aperture objective lenses, a sample stage, a light source, and a CCD camera. Projections are acquired by illuminating a specimen at a number of selected angles within the numerical aperture of the objective (0 < φ < 135°). A new reconstruction algorithm that employs both transform-based and iterative methods is developed to address the limited-angle reconstruction problem. A transform-based reconstruction is used as an initial starting point for the following iterative reconstruction. A feedback correction of the reconstructed image is made on each iteration step. The algorithm enables to incorporate previously known information about the object into the reconstruction process, and improves the reconstruction accuracy. Microscopic 3-D volume reconstructions of quantitatively absorption-stained cells have been generated. The system enables one to look at multiple optical levels of a specimen, and at more natural tissue architecture, including intact cells. Axial and lateral resolutions were measured to be better than 6 microns.

  9. Three-dimensional forecasting models on a desk-top computer

    SciTech Connect

    Yamada, T.; Bunker, S.

    1990-01-01

    Recent advances in the desk-top computer capabilities, particularly those of an engineering workstation, are truly astonishing. A high performance workstation reportedly exceeded a supercomputer in certain scaler operations. Affordability and portability of a desk- top computer opened doors to many applications which were previously considered impossible. The purpose of the present study is to demonstrate the feasibility of using and engineering workstation to operate a three-dimensional mesoscale modeling system to describe the transport and dispersion of atmospheric pollutants over complex terrain surrounding Vandenberg Air Force Base (VAFB), Vandenberg, California. Our modeling system is composed of two numerical codes, HOTMAC, and RAPTAD. HOTMAC is a mesoscale forecast code that is able to model three-dimensional distributions of wind speed, wind direction, turbulence, temperature, and water vapor. RAPTAD is a Lagrangian puff code based on the Monte Carlo statistical diffusion process. RAPTAD can be used under extreme conditions where a conventional Gaussian plume model may fail.

  10. Three-dimensional analysis of condylar hyperplasia with computed tomography.

    PubMed

    Mutoh, Y; Ohashi, Y; Uchiyama, N; Terada, K; Hanada, K; Sasaki, F

    1991-02-01

    Three-dimensional surface reconstruction imaging from CT scans was used to study the deformity of the mandible in six patients with mandibular asymmetry. High-resolution axial CT scans of the mandible were obtained using Somatom-DR3 (Siemens). COSMOZONE-2SA (Nikon) with PC-9801VX21 (NEC) was used to reconstruct the three-dimensional images. The six patients were divided into two groups. One group was classified as unilateral hybrid forms and the other group was classified hemimandibular elongation on the diagnostic criteria of Obwegeser and Makek (1986). In the three-dimensional surface reconstruction, exact location and the degree of the deformity in the region from the ascending ramus to the condylar head and the lingual aspect from the ascending ramus to the mandibular body were accurately represented. In addition, the three-dimensional images could be easily rotated arbitrarily, precise evaluation could be done at every part of the mandible. On diagnosis, the mandibular morphology classified into the unilateral hybrid forms was presumed to vary from case to case even in the same classification. PMID:2037691

  11. Advancements for Three-Dimensional Remote Sensing of the Atmosphere

    NASA Astrophysics Data System (ADS)

    Martin, William George Kulesz

    Climate modeling efforts depend on remote sensing observations of clouds and aerosols in the atmosphere. This dissertation presents a foundation for using three-dimensional (3D) remote sensing techniques to retrieve cloud and aerosol properties in complex cloud fields. The initial research was aimed at establishing a set of single-scattering properties that could be used in subsequent 3D remote sensing applications. A theoretical stability analysis was used to evaluate what information about the particulate scattering material could be determined from in situ radiance and polarization measurements, and particle size and refractive index were retrieved from synthetic measurements with noise levels comparable to those of existing laboratory instruments. Subsequent research focused on the techniques necessary to retrieve 3D atmosphere and surface properties from images taken by an airborne or space-borne instrument. With the goal of using 3D retrieval methods to extend monitoring capabilities to regions with broken cloud fields, we formulated an efficient procedure for using codes that solve the 3D vector radiative transfer equation (VRTE) to adjust atmosphere and surface properties to fit multi-angle/multi-pixel polarimetric measurements of the atmosphere. Taken together, these two bodies of work contribute to ongoing research which focuses on developing new methods for retrieving aerosols in complex 3D cloud fields, and may extend monitoring capabilities to these currently unresolved scenes.

  12. Three dimensional optical coherence tomography imaging: advantages and advances.

    PubMed

    Gabriele, Michelle L; Wollstein, Gadi; Ishikawa, Hiroshi; Xu, Juan; Kim, Jongsick; Kagemann, Larry; Folio, Lindsey S; Schuman, Joel S

    2010-11-01

    Three dimensional (3D) ophthalmic imaging using optical coherence tomography (OCT) has revolutionized assessment of the eye, the retina in particular. Recent technological improvements have made the acquisition of 3D-OCT datasets feasible. However, while volumetric data can improve disease diagnosis and follow-up, novel image analysis techniques are now necessary in order to process the dense 3D-OCT dataset. Fundamental software improvements include methods for correcting subject eye motion, segmenting structures or volumes of interest, extracting relevant data post hoc and signal averaging to improve delineation of retinal layers. In addition, innovative methods for image display, such as C-mode sectioning, provide a unique viewing perspective and may improve interpretation of OCT images of pathologic structures. While all of these methods are being developed, most remain in an immature state. This review describes the current status of 3D-OCT scanning and interpretation, and discusses the need for standardization of clinical protocols as well as the potential benefits of 3D-OCT scanning that could come when software methods for fully exploiting these rich datasets are available clinically. The implications of new image analysis approaches include improved reproducibility of measurements garnered from 3D-OCT, which may then help improve disease discrimination and progression detection. In addition, 3D-OCT offers the potential for preoperative surgical planning and intraoperative surgical guidance.

  13. Application of three-dimensional computed tomography in craniofacial clinical practice and research.

    PubMed

    Anderson, P J; Yong, R; Surman, T L; Rajion, Z A; Ranjitkar, S

    2014-06-01

    Following the invention of the first computed tomography (CT) scanner in the early 1970s, many innovations in three-dimensional (3D) diagnostic imaging technology have occurred, leading to a wide range of applications in craniofacial clinical practice and research. Three-dimensional image analysis provides superior and more detailed information compared with conventional plain two-dimensional (2D) radiography, with the added benefit of 3D printing for preoperative treatment planning and regenerative therapy. Current state-of-the-art multidetector CT (MDCT), also known as medical CT, has an important role in the diagnosis and management of craniofacial injuries and pathology. Three-dimensional cone beam CT (CBCT), pioneered in the 1990s, is gaining increasing popularity in dental and craniofacial clinical practice because of its faster image acquisition at a lower radiation dose, but sound guidelines are needed to ensure its optimal clinical use. Recent innovations in micro-computed tomography (micro-CT) have revolutionized craniofacial biology research by enabling higher resolution scanning of teeth beyond the capabilities of MDCT and CBCT, presenting new prospects for translational clinical research. Even after four decades of refinement, CT technology continues to advance and broaden the horizons of craniofacial clinical practice and phenomics research. PMID:24611727

  14. Three-dimensional hybrid grid generation using advancing front techniques

    NASA Technical Reports Server (NTRS)

    Steinbrenner, John P.; Noack, Ralph W.

    1995-01-01

    A new 3-dimensional hybrid grid generation technique has been developed, based on ideas of advancing fronts for both structured and unstructured grids. In this approach, structured grids are first generate independently around individual components of the geometry. Fronts are initialized on these structure grids, and advanced outward so that new cells are extracted directly from the structured grids. Employing typical advancing front techniques, cells are rejected if they intersect the existing front or fail other criteria When no more viable structured cells exist further cells are advanced in an unstructured manner to close off the overall domain, resulting in a grid of 'hybrid' form. There are two primary advantages to the hybrid formulation. First, generating blocks with limited regard to topology eliminates the bottleneck encountered when a multiple block system is used to fully encapsulate a domain. Individual blocks may be generated free of external constraints, which will significantly reduce the generation time. Secondly, grid points near the body (presumably with high aspect ratio) will still maintain a structured (non-triangular or tetrahedral) character, thereby maximizing grid quality and solution accuracy near the surface.

  15. Computation of three-dimensional mixed convective boundary layer flow

    NASA Technical Reports Server (NTRS)

    Gadepalli, Prashandt; Rahman, Muhammad M.

    1995-01-01

    The paper presents the numerical solution of heat and mass transfer during cross-flow (orthogonal) mixed convection. In this class of flow, a buoyancy-driven transport in the vertical direction and a forced convective flow in the horizontal direction results in a three-dimensional boundary layer structure adjacent to the plate. The rates of heat and mass transfer are determined by a combined influence of the two transport processes. The equations for the conservation of mass, momentum, energy, and species concentration were solved along with appropriate boundary conditions to determine the distributions of velocity components, temperature, and concentration across the thickness of the boundary layer at different locations on the plate. Results were expressed in dimensionless form using Reynolds number, Richardson number for heat transfer, Richardson number for mass transfer, Prandtl number, and Schmidt number as parameters. It was found that the transport is dominated by buoyancy at smaller vertical locations and at larger distances away from the forced convection leading edge. Effects of forced convection appeared to be very strong at smaller horizontal distances from the leading edge. The cross stream forced convection enhanced the rate of heat and mass transfer by a very significant amount.

  16. The development of a three-dimensional partially elliptic flow computer program for combustor research

    NASA Technical Reports Server (NTRS)

    Pan, Y. S.

    1978-01-01

    A three dimensional, partially elliptic, computer program was developed. Without requiring three dimensional computer storage locations for all flow variables, the partially elliptic program is capable of predicting three dimensional combustor flow fields with large downstream effects. The program requires only slight increase of computer storage over the parabolic flow program from which it was developed. A finite difference formulation for a three dimensional, fully elliptic, turbulent, reacting, flow field was derived. Because of the negligible diffusion effects in the main flow direction in a supersonic combustor, the set of finite-difference equations can be reduced to a partially elliptic form. Only the pressure field was governed by an elliptic equation and requires three dimensional storage; all other dependent variables are governed by parabolic equations. A numerical procedure which combines a marching integration scheme with an iterative scheme for solving the elliptic pressure was adopted.

  17. Parallel computation of three-dimensional nonlinear magnetostatic problems.

    SciTech Connect

    Levine, D.; Gropp, W.; Forsman, K.; Kettunen, L.; Mathematics and Computer Science; Tampere Univ. of Tech.

    1999-02-01

    We describe a general-purpose parallel electromagnetic code for computing accurate solutions to large computationally demanding, 3D, nonlinear magnetostatic problems. The code, CORAL, is based on a volume integral equation formulation. Using an IBM SP parallel computer and iterative solution methods, we successfully solved the dense linear systems inherent in such formulations. A key component of our work was the use of the PETSc library, which provides parallel portability and access to the latest linear algebra solution technology.

  18. The three-dimensional Multi-Block Advanced Grid Generation System (3DMAGGS)

    NASA Technical Reports Server (NTRS)

    Alter, Stephen J.; Weilmuenster, Kenneth J.

    1993-01-01

    As the size and complexity of three dimensional volume grids increases, there is a growing need for fast and efficient 3D volumetric elliptic grid solvers. Present day solvers are limited by computational speed and do not have all the capabilities such as interior volume grid clustering control, viscous grid clustering at the wall of a configuration, truncation error limiters, and convergence optimization residing in one code. A new volume grid generator, 3DMAGGS (Three-Dimensional Multi-Block Advanced Grid Generation System), which is based on the 3DGRAPE code, has evolved to meet these needs. This is a manual for the usage of 3DMAGGS and contains five sections, including the motivations and usage, a GRIDGEN interface, a grid quality analysis tool, a sample case for verifying correct operation of the code, and a comparison to both 3DGRAPE and GRIDGEN3D. Since it was derived from 3DGRAPE, this technical memorandum should be used in conjunction with the 3DGRAPE manual (NASA TM-102224).

  19. Computer-assisted three-dimensional reconstruction and simulations of vestibular macular neural connectivities

    NASA Technical Reports Server (NTRS)

    Ross, Muriel D.; Chimento, Thomas; Doshay, David; Cheng, Rei

    1992-01-01

    Results of computer-assisted research concerned with the three-dimensional reconstruction and simulations of vestibular macular neural connectivities are summarized. The discussion focuses on terminal/receptive fields, the question of synapses across the striola, endoplasmic reticulum and its potential role in macular information processing, and the inner epithelial plexus. Also included are preliminary results of computer simulations of nerve fiber collateral functioning, an essential step toward the three-dimensional simulation of a functioning macular neural network.

  20. Numerical procedures for three-dimensional computational surface thermochemistry

    NASA Technical Reports Server (NTRS)

    Milos, Frank S.; Rasky, Daniel J.

    1992-01-01

    Models and equations for surface thermochemistry and near-surface thermophysics of aerodynamically-heated thermal protection materials are reviewed, with particular emphasis on computational boundary conditions for surface mass and energy transfer. The surface energy and mass balances, coupled with an appropriate ablation or surface catalysis model, provide complete thermochemical boundary conditions for a true multidisciplinary solution of the fully coupled fluid-dynamics/solid mechanics problem. Practical approximate solutions can be obtained by using a detailed model with full thermophysics for either the solid or fluid phase amd a semianalytic method for the other half of the problem. A significant increase in the state-of-the-art in aerothermal computational fluid dynamics is possible by uniting CFD methodology with surface thermochemistry boundary conditions and the heat-balance-integral method.

  1. Hydrogen program combustion research: Three dimensional computational modeling

    SciTech Connect

    Johnson, N.L.; Amsden, A.A.; Butler, T.D.

    1995-05-01

    We have significantly increased our computational modeling capability by the addition of a vertical valve model in KIVA-3, code used internationally for engine design. In this report the implementation and application of the valve model is described. The model is shown to reproduce the experimentally verified intake flow problem examined by Hessel. Furthermore, the sensitivity and performance of the model is examined for the geometry and conditions of the hydrogen-fueled Onan engine in development at Sandia National Laboratory. Overall the valve model is shown to have comparable accuracy as the general flow simulation capability in KIVA-3, which has been well validated by past comparisons to experiments. In the exploratory simulations of the Onan engine, the standard use of the single kinetic reaction for hydrogen oxidation was found to be inadequate for modeling the hydrogen combustion because of its inability to describe both the observed laminar flame speed and the absence of autoignition in the Onan engine. We propose a temporary solution that inhibits the autoignition without sacrificing the ability to model spark ignition. In the absence of experimental data on the Onan engine, a computational investigation was undertaken to evaluate the importance of modeling the intake flow on the combustion and NO{sub x} emissions. A simulation that began with the compression of a quiescent hydrogen-air mixture was compared to a simulation of the full induction process with resolved opening and closing of the intake valve. Although minor differences were observed in the cylinder-averaged pressure, temperature, bulk-flow kinetic energy and turbulent kinetic energy, large differences where observed in the hydrogen combustion rate and NO{sub x} emissions. The flow state at combustion is highly heterogeneous and sensitive to the details of the bulk and turbulent flow and that an accurate simulation of the Onan engine must include the modeling of the air-fuel induction.

  2. Three Dimensional Computer Graphics Federates for the 2012 Smackdown Simulation

    NASA Technical Reports Server (NTRS)

    Fordyce, Crystal; Govindaiah, Swetha; Muratet, Sean; O'Neil, Daniel A.; Schricker, Bradley C.

    2012-01-01

    The Simulation Interoperability Standards Organization (SISO) Smackdown is a two-year old annual event held at the 2012 Spring Simulation Interoperability Workshop (SIW). A primary objective of the Smackdown event is to provide college students with hands-on experience in developing distributed simulations using High Level Architecture (HLA). Participating for the second time, the University of Alabama in Huntsville (UAHuntsville) deployed four federates, two federates simulated a communications server and a lunar communications satellite with a radio. The other two federates generated 3D computer graphics displays for the communication satellite constellation and for the surface based lunar resupply mission. Using the Light-Weight Java Graphics Library, the satellite display federate presented a lunar-texture mapped sphere of the moon and four Telemetry Data Relay Satellites (TDRS), which received object attributes from the lunar communications satellite federate to drive their motion. The surface mission display federate was an enhanced version of the federate developed by ForwardSim, Inc. for the 2011 Smackdown simulation. Enhancements included a dead-reckoning algorithm and a visual indication of which communication satellite was in line of sight of Hadley Rille. This paper concentrates on these two federates by describing the functions, algorithms, HLA object attributes received from other federates, development experiences and recommendations for future, participating Smackdown teams.

  3. Three-dimensional radiative transfer on a massively parallel computer

    NASA Technical Reports Server (NTRS)

    Vath, H. M.

    1994-01-01

    We perform 3D radiative transfer calculations in non-local thermodynamic equilibrium (NLTE) in the simple two-level atom approximation on the Mas-Par MP-1, which contains 8192 processors and is a single instruction multiple data (SIMD) machine, an example of the new generation of massively parallel computers. On such a machine, all processors execute the same command at a given time, but on different data. To make radiative transfer calculations efficient, we must re-consider the numerical methods and storage of data. To solve the transfer equation, we adopt the short characteristic method and examine different acceleration methods to obtain the source function. We use the ALI method and test local and non-local operators. Furthermore, we compare the Ng and the orthomin methods of acceleration. We also investigate the use of multi-grid methods to get fast solutions for the NLTE case. In order to test these numerical methods, we apply them to two problems with and without periodic boundary conditions.

  4. Real-time application of advanced three-dimensional graphic techniques for research aircraft simulation

    NASA Technical Reports Server (NTRS)

    Davis, Steven B.

    1990-01-01

    Visual aids are valuable assets to engineers for design, demonstration, and evaluation. Discussed here are a variety of advanced three-dimensional graphic techniques used to enhance the displays of test aircraft dynamics. The new software's capabilities are examined and possible future uses are considered.

  5. Assessment of three-dimensional inviscid codes and loss calculations for turbine aerodynamic computations

    NASA Technical Reports Server (NTRS)

    Povinelli, L. A.

    1984-01-01

    An assessment of several three dimensional inviscid turbine aerodynamic computer codes and loss models used at the NASA Lewis Research Center is presented. Five flow situations are examined, for which both experimental data and computational results are available. The five flows form a basis for the evaluation of the computational procedures. It was concluded that stator flows may be calculated with a high degree of accuracy, whereas, rotor flow fields are less accurately determined. Exploitation of contouring, learning, bowing, and sweeping will require a three dimensional viscous analysis technique.

  6. THREED: A computer program for three dimensional transformation of coordinates. [in lunar photo triangulation mapping

    NASA Technical Reports Server (NTRS)

    Wong, K. W.

    1974-01-01

    Program THREED was developed for the purpose of a research study on the treatment of control data in lunar phototriangulation. THREED is the code name of a computer program for performing absolute orientation by the method of three-dimensional projective transformation. It has the capability of performing complete error analysis on the computed transformation parameters as well as the transformed coordinates.

  7. Three-dimensional position changes of the midface following Le Fort III advancement in syndromic craniosynostosis.

    PubMed

    Bouw, Frederik P; Nout, Erik; van Bezooijen, Jine S; Koudstaal, Maarten J; Veenland, Jifke F; Wolvius, Eppo B

    2015-07-01

    Little is known about the positional change of the Le Fort III segment following advancement. To study this, pre- and postoperative computed tomography scans of 18 craniosynosthosis patients were analyzed. The Le Fort III segment movement was measured by creating a reference coordinate system and by superpositioning the postoperative over the preoperative scan. On both the pre- and postoperative scans, four anatomical landmarks were marked: the most anterior point of the left and right foramen infraorbitale, the nasion, and the anterior nasal spine. A significant anterior movement of the four reference points was observed. No significant transversal differences were found. A significant difference between the anterior movement of the nasion and anterior nasal spine was found. In vertical dimension, there was a significant cranial movement of nasion in the study group. In addition, from all patients standardized lateral X-rays were viewed to determine the location and direction of force application that were linked to the outcomes of the three-dimensional movement of the nasion and anterior nasal spine (ANS) and the surgical technique. Conclusively, a significant advancement of the midface can be achieved with Le Fort III distraction osteogenesis in this specific patient group. Counterclockwise movement seemed to be the most dominant movement despite different modes of anchorage.

  8. Computational hemodynamics of an implanted coronary stent based on three-dimensional cine angiography reconstruction.

    PubMed

    Chen, Mounter C Y; Lu, Po-Chien; Chen, James S Y; Hwang, Ned H C

    2005-01-01

    Coronary stents are supportive wire meshes that keep narrow coronary arteries patent, reducing the risk of restenosis. Despite the common use of coronary stents, approximately 20-35% of them fail due to restenosis. Flow phenomena adjacent to the stent may contribute to restenosis. Three-dimensional computational fluid dynamics (CFD) and reconstruction based on biplane cine angiography were used to assess coronary geometry and volumetric blood flows. A patient-specific left anterior descending (LAD) artery was reconstructed from single-plane x-ray imaging. With corresponding electrocardiographic signals, images from the same time phase were selected from the angiograms for dynamic three-dimensional reconstruction. The resultant three-dimensional LAD artery at end-diastole was adopted for detailed analysis. Both the geometries and flow fields, based on a computational model from CAE software (ANSYS and CATIA) and full three-dimensional Navier-Stroke equations in the CFD-ACE+ software, respectively, changed dramatically after stent placement. Flow fields showed a complex three-dimensional spiral motion due to arterial tortuosity. The corresponding wall shear stresses, pressure gradient, and flow field all varied significantly after stent placement. Combined angiography and CFD techniques allow more detailed investigation of flow patterns in various segments. The implanted stent(s) may be quantitatively studied from the proposed hemodynamic modeling approach.

  9. GEO3D - Three-Dimensional Computer Model of a Ground Source Heat Pump System

    SciTech Connect

    James Menart

    2013-06-07

    This file is the setup file for the computer program GEO3D. GEO3D is a computer program written by Jim Menart to simulate vertical wells in conjunction with a heat pump for ground source heat pump (GSHP) systems. This is a very detailed three-dimensional computer model. This program produces detailed heat transfer and temperature field information for a vertical GSHP system.

  10. An Exploration of Three-Dimensional Integrated Assessment for Computational Thinking

    ERIC Educational Resources Information Center

    Zhong, Baichang; Wang, Qiyun; Chen, Jie; Li, Yi

    2016-01-01

    Computational thinking (CT) is a fundamental skill for students, and assessment is a critical factor in education. However, there is a lack of effective approaches to CT assessment. Therefore, we designed the Three-Dimensional Integrated Assessment (TDIA) framework in this article. The TDIA has two aims: one was to integrate three dimensions…

  11. Angular interpolations and splice options for three-dimensional transport computations

    SciTech Connect

    Abu-Shumays, I.K.; Yehnert, C.E.

    1996-01-01

    New, accurate and mathematically rigorous angular Interpolation strategies are presented. These strategies preserve flow and directionality separately over each octant of the unit sphere, and are based on a combination of spherical harmonics expansions and least squares algorithms. Details of a three-dimensional to three-dimensional (3-D to 3-D) splice method which utilizes the new angular interpolations are summarized. The method has been implemented in a multidimensional discrete ordinates transport computer program. Various features of the splice option are illustrated by several applications to a benchmark Dog-Legged Void Neutron (DLVN) streaming and transport experimental assembly.

  12. Anatrecon: a user guide to software package for computer-aided three-dimensional reconstructions.

    PubMed

    Spacek, J

    1994-01-01

    "Anatrecon" is an original Czech software package. It enables one to make easy three-dimensional reconstructions from serial sections of cells and tissues. It offers very acceptable information on the three-dimensional structure and especially on mutual relationships of biological objects in such cases when other methodical approaches, e.g., scanning electron microscopy or laser scanning confocal light microscopy, cannot be applied. The program runs on a standard IBM compatible personal computer supplemented with a digitizing tablet. The author describes the program in detail and presents examples of reconstructions of dendritic spine and nucleus of nerve cell. PMID:7873799

  13. The direct examination of three-dimensional bone architecture in vitro by computed tomography.

    PubMed

    Feldkamp, L A; Goldstein, S A; Parfitt, A M; Jesion, G; Kleerekoper, M

    1989-02-01

    We describe a new method for the direct examination of three-dimensional bone structure in vitro based on high-resolution computed tomography (CT). Unlike clinical CT, a three-dimensional reconstruction array is created directly, rather than a series of two-dimensional slices. All structural indices commonly determined from two-dimensional histologic sections can be obtained nondestructively from a large number of slices in each of three orthogonal directions. This permits a comprehensive description of structural variation within a specimen and greatly facilitates the study of structural anisotropy. A measure of three-dimensional connectivity (Euler number/tissue volume) has been determined for the first time in human cancellous bone and shown to correlate with several two-dimensional histomorphometric indices. The method has the potential for overcoming many of the limitations of current approaches to the study of bone architecture at the microscopic level.

  14. Computational strategies for three-dimensional flow simulations on distributed computer systems

    NASA Technical Reports Server (NTRS)

    Sankar, Lakshmi N.; Weed, Richard A.

    1995-01-01

    This research effort is directed towards an examination of issues involved in porting large computational fluid dynamics codes in use within the industry to a distributed computing environment. This effort addresses strategies for implementing the distributed computing in a device independent fashion and load balancing. A flow solver called TEAM presently in use at Lockheed Aeronautical Systems Company was acquired to start this effort. The following tasks were completed: (1) The TEAM code was ported to a number of distributed computing platforms including a cluster of HP workstations located in the School of Aerospace Engineering at Georgia Tech; a cluster of DEC Alpha Workstations in the Graphics visualization lab located at Georgia Tech; a cluster of SGI workstations located at NASA Ames Research Center; and an IBM SP-2 system located at NASA ARC. (2) A number of communication strategies were implemented. Specifically, the manager-worker strategy and the worker-worker strategy were tested. (3) A variety of load balancing strategies were investigated. Specifically, the static load balancing, task queue balancing and the Crutchfield algorithm were coded and evaluated. (4) The classical explicit Runge-Kutta scheme in the TEAM solver was replaced with an LU implicit scheme. And (5) the implicit TEAM-PVM solver was extensively validated through studies of unsteady transonic flow over an F-5 wing, undergoing combined bending and torsional motion. These investigations are documented in extensive detail in the dissertation, 'Computational Strategies for Three-Dimensional Flow Simulations on Distributed Computing Systems', enclosed as an appendix.

  15. Insights on slab-driven mantle flow from advances in three-dimensional modelling

    NASA Astrophysics Data System (ADS)

    Jadamec, Margarete A.

    2016-10-01

    The wealth of seismic observations collected over the past 20 years has raised intriguing questions about the three-dimensional (3D) nature of the mantle flow field close to subduction zones and provided a valuable constraint for how the plate geometry may influence mantle flow proximal to the slab. In geodynamics, there has been a new direction of subduction zone modelling that has explored the 3D nature of slab-driven mantle flow, motivated in part by the observations from shear wave splitting, but also by the observed variations in slab geometries worldwide. Advances in high-performance computing are now allowing for an unprecedented level of detail to be incorporated into numerical models of subduction. This paper summarizes recent advances from 3D geodynamic models that reveal the complex nature of slab-driven mantle flow, including trench parallel flow, toroidal flow around slab edges, mantle upwelling at lateral slab edges, and small scale convection within the mantle wedge. This implies slab-driven mantle deformation zones occur in the asthenosphere proximal to the slab, wherein the mantle may commonly flow in a different direction and rate than the surface plates, implying laterally variable plate-mantle coupling. The 3D slab-driven mantle flow can explain, in part, the lateral transport of geochemical signatures in subduction zones. In addition, high-resolution geographically referenced models can inform the interpretation of slab structure, where seismic data are lacking. The incorporation of complex plate boundaries into high-resolution, 3D numerical models opens the door to a new avenue of research in model construction, data assimilation, and modelling workflows, and gives 3D immersive visualization a new role in scientific discovery.

  16. Computational study of three dimensional viscous flow through a turbine cascade using a multi-domain spectral technique

    NASA Technical Reports Server (NTRS)

    Renaud, Earl W.; Tan, Choon S.

    1991-01-01

    The three dimensional viscous flow through a planar turbine cascade is numerically simulated by direct solution of the incompressible Navier-Stokes equations. Flow dependence in the spanwise direction is represented by direct expansion in Chebyshev polynomials, while the discretization on planes parallel to the endwalls is accomplished using the spectral element method. Elemental mapping from the physical to the computational space uses an algebraic mapping technique. A fractional time stepping method that consists of an explicit nonlinear convective step, an implicit pressure correction step, and an implicit viscous step is used to advance the Navier-Stokes equations forward in time. Results computed at moderate Reynolds numbers show a three dimensional endwall flow separation, a midspan separation of the blade suction surface boundary layer, and other three-dimensional features such as the presence of a saddle point flow in the endwall region. In addition, the computed skin friction lines are shown to be orthogonal to the surface vorticity lines, demonstrating the accuracy achievable in the present method.

  17. A three-dimensional adaptive grid method. [for computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Nakahashi, K.; Deiwert, G. S.

    1985-01-01

    A three-dimensional solution-adaptive-grid scheme is described which is suitable for complex fluid flows. This method, using tension and torsion spring analogies, was previously developed and successfully applied for two-dimensional flows. In the present work, a collection of three-dimensional flow fields are used to demonstrate the feasibility and versatility of this concept to include an added dimension. Flow fields considered include: (1) supersonic flow past an aerodynamic afterbody with a propulsive jet at incidence to the free stream, (2) supersonic flow past a blunt fin mounted on a solid wall, and (3) supersonic flow over a bump. In addition to generating three-dimensional solution-adapted grids, the method can also be used effectively as an initial grid generator. The utility of the method lies in: (1) optimum distribution of discrete grid points, (2) improvement of accuracy, (3) improved computational efficiency, (4) minimization of data base sizes, and (5) simplified three-dimensional grid generation.

  18. A computer code for three-dimensional incompressible flows using nonorthogonal body-fitted coordinate systems

    NASA Astrophysics Data System (ADS)

    Chen, Y. S.

    1986-03-01

    In this report, a numerical method for solving the equations of motion of three-dimensional incompressible flows in nonorthogonal body-fitted coordinate (BFC) systems has been developed. The equations of motion are transformed to a generalized curvilinear coordinate system from which the transformed equations are discretized using finite difference approximations in the transformed domain. The hybrid scheme is used to approximate the convection terms in the governing equations. Solutions of the finite difference equations are obtained iteratively by using a pressure-velocity correction algorithm (SIMPLE-C). Numerical examples of two- and three-dimensional, laminar and turbulent flow problems are employed to evaluate the accuracy and efficiency of the present computer code. The user's guide and computer program listing of the present code are also included.

  19. A computer code for three-dimensional incompressible flows using nonorthogonal body-fitted coordinate systems

    NASA Technical Reports Server (NTRS)

    Chen, Y. S.

    1986-01-01

    In this report, a numerical method for solving the equations of motion of three-dimensional incompressible flows in nonorthogonal body-fitted coordinate (BFC) systems has been developed. The equations of motion are transformed to a generalized curvilinear coordinate system from which the transformed equations are discretized using finite difference approximations in the transformed domain. The hybrid scheme is used to approximate the convection terms in the governing equations. Solutions of the finite difference equations are obtained iteratively by using a pressure-velocity correction algorithm (SIMPLE-C). Numerical examples of two- and three-dimensional, laminar and turbulent flow problems are employed to evaluate the accuracy and efficiency of the present computer code. The user's guide and computer program listing of the present code are also included.

  20. Incorporating core hysteresis properties in three-dimensional computations of transformer inrush current forces

    NASA Astrophysics Data System (ADS)

    Adly, A. A.; Hanafy, H. H.

    2009-04-01

    It is well known that transformer inrush currents depend upon the core properties, residual flux, switching instant, and the overall circuit parameters. Large transient inrush currents introduce abnormal electromagnetic forces which may destroy the transformer windings. This paper presents an approach through which core hysteresis may be incorporated in three-dimensional computations of transformer inrush current forces. Details of the approach, measurements, and simulations for a shell-type transformer are given in the paper.

  1. Computer programs for estimating aircraft takeoff performance in three dimensional space

    NASA Technical Reports Server (NTRS)

    Bowles, J. V.

    1974-01-01

    A set of computer programs has been developed to estimate the takeoff and initial climb-out maneuver of a given aircraft in three-dimensional space. The program is applicable to conventional, vectored lift and power-lift concept aircraft. The aircraft is treated as a point mass flying over a flat earth with no side slip, and the rotational dynamics have been neglected. The required input is described and a sample case presented.

  2. Three-dimensional computed tomography from interferometric measurements within a narrow cone of views

    NASA Technical Reports Server (NTRS)

    Decker, Arthur J.; Izen, Steven H.

    1991-01-01

    A theory to determine the properties of a fluid from measurements of its projections was developed and tested. Viewing cones as small as 10 degrees were evaluated, with the only assumption being that the property was space limited. The results of applying the theory to numerical and actual interferograms of a spherical discontinuity of refractive index are presented. The theory was developed to test the practicality and limits of using three-dimensional computer tomography in internal fluid dynamics.

  3. Three-Dimensional Computational Model for Flow in an Over-Expanded Nozzle With Porous Surfaces

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, K. S.; Elmiligui, Alaa; Hunter, Craig A.; Massey, Steven J.

    2006-01-01

    A three-Dimensional computational model is used to simulate flow in a non-axisymmetric, convergent-divergent nozzle incorporating porous cavities for shock-boundary layer interaction control. The nozzle has an expansion ratio (exit area/throat area) of 1.797 and a design nozzle pressure ratio of 8.78. Flow fields for the baseline nozzle (no porosity) and for the nozzle with porous surfaces of 10% openness are computed for Nozzle Pressure Ratio (NPR) varying from 1.29 to 9.54. The three dimensional computational results indicate that baseline (no porosity) nozzle performance is dominated by unstable, shock-induced, boundary-layer separation at over-expanded conditions. For NPR less than or equal to 1.8, the separation is three dimensional, somewhat unsteady, and confined to a bubble (with partial reattachment over the nozzle flap). For NPR greater than or equal to 2.0, separation is steady and fully detached, and becomes more two dimensional as NPR increased. Numerical simulation of porous configurations indicates that a porous patch is capable of controlling off design separation in the nozzle by either alleviating separation or by encouraging stable separation of the exhaust flow. In the present paper, computational simulation results, wall centerline pressure, mach contours, and thrust efficiency ratio are presented, discussed and compared with experimental data. Results indicate that comparisons are in good agreement with experimental data. The three-dimensional simulation improves the comparisons for over-expanded flow conditions as compared with two-dimensional assumptions.

  4. Three-dimensional assessment of mandibular advancement 1 year after surgery

    PubMed Central

    de Assis Ribeiro Carvalho, Felipe; Cevidanes, Lucia Helena Soares; Motta, Alexandre Trindade Simões da; de Oliveira Almeida, Marco Antonio; Phillips, Ceib

    2010-01-01

    Introduction This prospective observational study evaluated changes in the 3-dimensional position and remodeling of the mandibular rami, condyles, and chin at splint removal and 1 year after mandibular advancement surgery. Methods Presurgery, splint removal (4–6 weeks postsurgery), and 1-year postsurgery cone-beam computed tomography scans of 27 subjects were used. Superimposition on the cranial base was used to assess positional or remodeling changes in the anatomic regions of interest. Surface distance displacements were visually displayed and quantified by 3-dimensional color maps. A 1-sample t test was used to assess the average postsurgical changes of each region of interest. The level of significance was set at 0.05. Results After antero-inferior chin displacement with surgery (mean, 6.81 ± 3.2 mm at splint removal), the average 1-year post-surgery displacement was not statistically significant (P = 0.44). Postsurgical adaptations greater than 2 mm were observed in 48% of the patients: 16% with an additional anterior-inferior displacement of the chin of 2 to 4 mm, and 4% with ≥4 mm; 20% had postero-superior movement of 2 to 4 mm, and 8% had postero-superior movement of ≥4 mm. The condyles tended to move, on average, ≤2 mm supero-posteriorly with surgery, and this small positional displacement was maintained 1 year postsurgery (right condyle, P = 0.58; left, P = 0.88). The rami exhibited outward (lateral) movements with surgery, with greater displacement of the inferior part of the rami (≥2 mm in 65% of the subjects). This torque of the ramus with surgery was stable 1 year postsurgery. Conclusions Three-dimensional assessment of skeletal changes with mandibular advancement surgery shows that nearly half of the patients have >2 mm change in chin position from splint removal to the 1-year follow-up, with approximately equal chances of anterior and posterior movement. Torque of the rami usually occurs with mandibular advancement surgery. PMID:20381760

  5. Three-dimensional computations of transverse hydrogen jet combustion in a supersonic airstream

    NASA Technical Reports Server (NTRS)

    Uenishi, K.; Rogers, R. C.; Northam, G. B.

    1987-01-01

    A computational fluid dynamics (CFD) code is being developed to compute the mixing and combustion of hydrogen fuel in the turbulent flow fields of supersonic combustion ramjets (scramjet). The code solves the three-dimensional Reynolds time-averaged complete Navier-Stokes equations including transport equations for a four species, two reaction, global finite rate chemistry model. The code was applied to the case of transverse injection of hydrogen from a sonic circular orifice into a supersonic airstream. The equations were numerically integrated using MacCormack's explicit method, and the algebraic eddy viscosity model of Baldwin-Lomax was used to model the turbulence. In the species transport and energy equations, diffusion coefficients based on Fick's Law and an assumption of unit Lewis number were applied. Computed features of the three-dimensional flow field are depicted by static pressure, static temperature, mass fraction of species, and velocity vectors. For engineering interest, mixing and combustion parameters were examined to assess the effect of injector diameter, injected fuel pressure, fuel-air ratio, and spacing of fuel injectors. The objective of the present paper is to demonstrate the capability of the present three-dimensional spatially elliptic, CFD code for turbulent, reacting flow. Application of the code to specific supersonic combustion configurations is planned.

  6. A combined direct/inverse three-dimensional transonic wing design method for vector computers

    NASA Technical Reports Server (NTRS)

    Weed, R. A.; Carlson, L. A.; Anderson, W. K.

    1984-01-01

    A three-dimensional transonic-wing design algorithm for vector computers is developed, and the results of sample computations are presented graphically. The method incorporates the direct/inverse scheme of Carlson (1975), a Cartesian grid system with boundary conditions applied at a mean plane, and a potential-flow solver based on the conservative form of the full potential equation and using the ZEBRA II vectorizable solution algorithm of South et al. (1980). The accuracy and consistency of the method with regard to direct and inverse analysis and trailing-edge closure are verified in the test computations.

  7. Computer-assisted three-dimensional surgical planning and simulation: 3D virtual osteotomy.

    PubMed

    Xia, J; Ip, H H; Samman, N; Wang, D; Kot, C S; Yeung, R W; Tideman, H

    2000-02-01

    A computer-assisted three-dimensional virtual osteotomy system for orthognathic surgery (CAVOS) is presented. The virtual reality workbench is used for surgical planning. The surgeon immerses in a virtual reality environment with stereo eyewear, holds a virtual "scalpel" (3D Mouse) and operates on a "real" patient (3D visualization) to obtain pre-surgical prediction (3D bony segment movements). Virtual surgery on a computer-generated 3D head model is simulated and can be visualized from any arbitrary viewing point in a personal computer system.

  8. Interactive computer graphic surface modeling of three-dimensional solid domains for boundary element analysis

    NASA Technical Reports Server (NTRS)

    Perucchio, R.; Ingraffea, A. R.

    1984-01-01

    The establishment of the boundary element method (BEM) as a valid tool for solving problems in structural mechanics and in other fields of applied physics is discussed. The development of an integrated interactive computer graphic system for the application of the BEM to three dimensional problems in elastostatics is described. The integration of interactive computer graphic techniques and the BEM takes place at the preprocessing and postprocessing stages of the analysis process, when, respectively, the data base is generated and the results are interpreted. The interactive computer graphic modeling techniques used for generating and discretizing the boundary surfaces of a solid domain are outlined.

  9. Computation of pair distribution functions and three-dimensional densities with a reduced variance principle

    NASA Astrophysics Data System (ADS)

    Borgis, Daniel; Assaraf, Roland; Rotenberg, Benjamin; Vuilleumier, Rodolphe

    2013-12-01

    No fancy statistical objects here, we go back to the computation of one of the most basic and fundamental quantities in the statistical mechanics of fluids, namely the pair distribution functions. Those functions are usually computed in molecular simulations by using histogram techniques. We show here that they can be estimated using a global information on the instantaneous forces acting on the particles, and that this leads to a reduced variance compared to the standard histogram estimators. The technique is extended successfully to the computation of three-dimensional solvent densities around tagged molecular solutes, quantities that are noisy and very long to converge, using histograms.

  10. Advances in high-resolution imaging – techniques for three-dimensional imaging of cellular structures

    PubMed Central

    Lidke, Diane S.; Lidke, Keith A.

    2012-01-01

    A fundamental goal in biology is to determine how cellular organization is coupled to function. To achieve this goal, a better understanding of organelle composition and structure is needed. Although visualization of cellular organelles using fluorescence or electron microscopy (EM) has become a common tool for the cell biologist, recent advances are providing a clearer picture of the cell than ever before. In particular, advanced light-microscopy techniques are achieving resolutions below the diffraction limit and EM tomography provides high-resolution three-dimensional (3D) images of cellular structures. The ability to perform both fluorescence and electron microscopy on the same sample (correlative light and electron microscopy, CLEM) makes it possible to identify where a fluorescently labeled protein is located with respect to organelle structures visualized by EM. Here, we review the current state of the art in 3D biological imaging techniques with a focus on recent advances in electron microscopy and fluorescence super-resolution techniques. PMID:22685332

  11. High performance computing for three-dimensional agent-based molecular models.

    PubMed

    Pérez-Rodríguez, G; Pérez-Pérez, M; Fdez-Riverola, F; Lourenço, A

    2016-07-01

    Agent-based simulations are increasingly popular in exploring and understanding cellular systems, but the natural complexity of these systems and the desire to grasp different modelling levels demand cost-effective simulation strategies and tools. In this context, the present paper introduces novel sequential and distributed approaches for the three-dimensional agent-based simulation of individual molecules in cellular events. These approaches are able to describe the dimensions and position of the molecules with high accuracy and thus, study the critical effect of spatial distribution on cellular events. Moreover, two of the approaches allow multi-thread high performance simulations, distributing the three-dimensional model in a platform independent and computationally efficient way. Evaluation addressed the reproduction of molecular scenarios and different scalability aspects of agent creation and agent interaction. The three approaches simulate common biophysical and biochemical laws faithfully. The distributed approaches show improved performance when dealing with large agent populations while the sequential approach is better suited for small to medium size agent populations. Overall, the main new contribution of the approaches is the ability to simulate three-dimensional agent-based models at the molecular level with reduced implementation effort and moderate-level computational capacity. Since these approaches have a generic design, they have the major potential of being used in any event-driven agent-based tool. PMID:27372059

  12. High performance computing for three-dimensional agent-based molecular models.

    PubMed

    Pérez-Rodríguez, G; Pérez-Pérez, M; Fdez-Riverola, F; Lourenço, A

    2016-07-01

    Agent-based simulations are increasingly popular in exploring and understanding cellular systems, but the natural complexity of these systems and the desire to grasp different modelling levels demand cost-effective simulation strategies and tools. In this context, the present paper introduces novel sequential and distributed approaches for the three-dimensional agent-based simulation of individual molecules in cellular events. These approaches are able to describe the dimensions and position of the molecules with high accuracy and thus, study the critical effect of spatial distribution on cellular events. Moreover, two of the approaches allow multi-thread high performance simulations, distributing the three-dimensional model in a platform independent and computationally efficient way. Evaluation addressed the reproduction of molecular scenarios and different scalability aspects of agent creation and agent interaction. The three approaches simulate common biophysical and biochemical laws faithfully. The distributed approaches show improved performance when dealing with large agent populations while the sequential approach is better suited for small to medium size agent populations. Overall, the main new contribution of the approaches is the ability to simulate three-dimensional agent-based models at the molecular level with reduced implementation effort and moderate-level computational capacity. Since these approaches have a generic design, they have the major potential of being used in any event-driven agent-based tool.

  13. Determination of midsagittal plane for evaluation of facial asymmetry using three-dimensional computed tomography

    PubMed Central

    Kim, Tae-Young; Baik, Jee-Seon; Park, Joo-Young; Chae, Hwa-Sung; Choi, Soon-Chul

    2011-01-01

    Purpose The aim of the present study was to investigate the disagreement of cephalometric analysis depending on the reference determination of midsagittal plane on three-dimensional computed tomography. Materials and Methods A total of 102 young women with class III dentofacial deformity were evaluated using three-dimensional computed tomography. The cranial and facial midsagittal planes were defined and the amounts of jaw deviation were calculated. The amounts of jaw deviation were compared with paired t-test (2-tailed) and Bland-Altman plot was drawn. Results The landmark tracing were reproducible (r≥.978). The jaws relative to the cranial midsagittal plane were 10-17 times more significantly deviated than to the facial midsagittal plane (P<.001). Bland-Altman plot demonstrated that the differences between the amounts of jaw deviation from two midsagittal planes were not normally distributed versus the average of the amounts of jaw deviation from two midsagittal planes. Conclusion The cephalometric analyses of facial asymmetry were significantly inconsistent depending on the reference determination of midsagittal plane. The reference for midsagittal plane should be carefully determined in three-dimensional cephalometric analysis of facial asymmetry of patients with class III dentofacial deformity. PMID:21977479

  14. WIND: Computer program for calculation of three dimensional potential compressible flow about wind turbine rotor blades

    NASA Technical Reports Server (NTRS)

    Dulikravich, D. S.

    1980-01-01

    A computer program is presented which numerically solves an exact, full potential equation (FPE) for three dimensional, steady, inviscid flow through an isolated wind turbine rotor. The program automatically generates a three dimensional, boundary conforming grid and iteratively solves the FPE while fully accounting for both the rotating cascade and Coriolis effects. The numerical techniques incorporated involve rotated, type dependent finite differencing, a finite volume method, artificial viscosity in conservative form, and a successive line overrelaxation combined with the sequential grid refinement procedure to accelerate the iterative convergence rate. Consequently, the WIND program is capable of accurately analyzing incompressible and compressible flows, including those that are locally transonic and terminated by weak shocks. The program can also be used to analyze the flow around isolated aircraft propellers and helicopter rotors in hover as long as the total relative Mach number of the oncoming flow is subsonic.

  15. Evaluation of the three-dimensional parabolic flow computer program SHIP

    NASA Technical Reports Server (NTRS)

    Pan, Y. S.

    1978-01-01

    The three-dimensional parabolic flow program SHIP designed for predicting supersonic combustor flow fields is evaluated to determine its capabilities. The mathematical foundation and numerical procedure are reviewed; simplifications are pointed out and commented upon. The program is then evaluated numerically by applying it to several subsonic and supersonic, turbulent, reacting and nonreacting flow problems. Computational results are compared with available experimental or other analytical data. Good agreements are obtained when the simplifications on which the program is based are justified. Limitations of the program and the needs for improvement and extension are pointed out. The present three dimensional parabolic flow program appears to be potentially useful for the development of supersonic combustors.

  16. Numerical computation of three-dimensional blunt body flow fields with an impinging shock

    NASA Technical Reports Server (NTRS)

    Holst, T. L.; Tannehill, J. C.

    1975-01-01

    A time-marching finite-difference method was used to solve the compressible Navier-Stokes equations for the three-dimensional wing-leading-edge shock impingement problem. The bow shock was treated as a discontinuity across which the exact shock jump conditions were applied. All interior shock layer detail such as shear layers, shock waves, jets, and the wall boundary layer were automatically captured in the solution. The impinging shock was introduced by discontinuously changing the freestream conditions across the intersection line at the bow shock. A special storage-saving procedure for sweeping through the finite-difference mesh was developed which reduces the required amount of computer storage by at least a factor of two without sacrificing the execution time. Numerical results are presented for infinite cylinder blunt body cases as well as the three-dimensional shock impingement case. The numerical results are compared with existing experimental and theoretical results.

  17. Computations of two- and three-dimensional flows using an adaptive mesh

    NASA Astrophysics Data System (ADS)

    Nakahashi, K.

    1985-11-01

    Two- and three-dimensional, steady and unsteady viscous flow fields are numerically simulated by solving the Navier-Stokes equations. A solution-adaptive-grid method is used to redistribute the grid points so as to improve the resolution of shock waves and shear layers without increasing the number of grid points. Flow fields considered include two-dimensional transonic flows about airfoils, two- and three-dimensional supersonic flow past an aerodynamic afterbody with a propulsive jet, supersonic flow over a blunt fin mounted on a wall, and supersonic flow over a bump. The computed results demonstrate a significant improvement in accuracy and quality of the solutions owing to the solution-adaptive mesh.

  18. A Computer Program for the Calculation of Three-Dimensional Transonic Nacelle/Inlet Flowfields

    NASA Technical Reports Server (NTRS)

    Vadyak, J.; Atta, E. H.

    1983-01-01

    A highly efficient computer analysis was developed for predicting transonic nacelle/inlet flowfields. This algorithm can compute the three dimensional transonic flowfield about axisymmetric (or asymmetric) nacelle/inlet configurations at zero or nonzero incidence. The flowfield is determined by solving the full-potential equation in conservative form on a body-fitted curvilinear computational mesh. The difference equations are solved using the AF2 approximate factorization scheme. This report presents a discussion of the computational methods used to both generate the body-fitted curvilinear mesh and to obtain the inviscid flow solution. Computed results and correlations with existing methods and experiment are presented. Also presented are discussions on the organization of the grid generation (NGRIDA) computer program and the flow solution (NACELLE) computer program, descriptions of the respective subroutines, definitions of the required input parameters for both algorithms, a brief discussion on interpretation of the output, and sample cases to illustrate application of the analysis.

  19. Computational And Experimental Studies Of Three-Dimensional Flame Spread Over Liquid Fuel Pools

    NASA Technical Reports Server (NTRS)

    Ross, Howard D. (Technical Monitor); Cai, Jinsheng; Liu, Feng; Sirignano, William A.; Miller, Fletcher J.

    2003-01-01

    Schiller, Ross, and Sirignano (1996) studied ignition and flame spread above liquid fuels initially below the flashpoint temperature by using a two-dimensional computational fluid dynamics code that solves the coupled equations of both the gas and the liquid phases. Pulsating flame spread was attributed to the establishment of a gas-phase recirculation cell that forms just ahead of the flame leading edge because of the opposing effect of buoyancy-driven flow in the gas phase and the thermocapillary-driven flow in the liquid phase. Schiller and Sirignano (1996) extended the same study to include flame spread with forced opposed flow in the gas phase. A transitional flow velocity was found above which an originally uniform spreading flame pulsates. The same type of gas-phase recirculation cell caused by the combination of forced opposed flow, buoyancy-driven flow, and thermocapillary-driven concurrent flow was responsible for the pulsating flame spread. Ross and Miller (1998) and Miller and Ross (1998) performed experimental work that corroborates the computational findings of Schiller, Ross, and Sirignano (1996) and Schiller and Sirignano (1996). Cai, Liu, and Sirignano (2002) developed a more comprehensive three-dimensional model and computer code for the flame spread problem. Many improvements in modeling and numerical algorithms were incorporated in the three-dimensional model. Pools of finite width and length were studied in air channels of prescribed height and width. Significant three-dimensional effects around and along the pool edge were observed. The same three-dimensional code is used to study the detailed effects of pool depth, pool width, opposed air flow velocity, and different levels of air oxygen concentration (Cai, Liu, and Sirignano, 2003). Significant three-dimensional effects showing an unsteady wavy flame front for cases of wide pool width are found for the first time in computation, after being noted previously by experimental observers (Ross

  20. Three-Dimensional Characterization of Tissue-Engineered Constructs by Contrast-Enhanced Nanofocus Computed Tomography

    PubMed Central

    Papantoniou, Ioannis; Sonnaert, Maarten; Geris, Liesbet; Luyten, Frank P.; Kerckhofs, Greet

    2014-01-01

    To successfully implement tissue-engineered (TE) constructs as part of a clinical therapy, it is necessary to develop quality control tools that will ensure accurate and consistent TE construct release specifications. Hence, advanced methods to monitor TE construct properties need to be further developed. In this study, we showed proof of concept for contrast-enhanced nanofocus computed tomography (CE-nano-CT) as a whole-construct imaging technique with a noninvasive potential that enables three-dimensional (3D) visualization and quantification of in vitro engineered extracellular matrix (ECM) in TE constructs. In particular, we performed a 3D qualitative and quantitative structural and spatial assessment of the in vitro engineered ECM, formed during static and perfusion bioreactor cell culture in 3D TE scaffolds, using two contrast agents, namely, Hexabrix® and phosphotungstic acid (PTA). To evaluate the potential of CE-nano-CT, a comparison was made to standardly used techniques such as Live/Dead viability/cytotoxicity, Picrosirius Red staining, and to net dry weight measurements of the TE constructs. When using Hexabrix as the contrast agent, the ECM volume fitted linearly with the net dry ECM weight independent from the flow rate used, thus suggesting that it stains most of the ECM. When using PTA as the contrast agent, comparing to net weight measurements showed that PTA only stains a part of the ECM. This was attributed to the binding specificity of this contrast agent. In addition, the PTA-stained CE-nano-CT data showed pronounced distinction between flow conditions when compared to Hexabrix, indicating culture-specific structural ECM differences. This novel type of information can contribute to optimize bioreactor culture conditions and potentially critical quality characteristics of TE constructs such as ECM quantity and homogeneity, facilitating the gradual transformation of TE constructs in well-characterized TE products. PMID:23800097

  1. Hypertext and three-dimensional computer graphics in an all digital PC-based CAI workstation.

    PubMed

    Schwarz, D L; Wind, G G

    1991-01-01

    In the past several years there has been an enormous increase in the number of computer-assisted instructional (CAI) applications. Many medical educators and physicians have recognized the power and utility of hypertext. Some developers have incorporated simple diagrams, scanned monochrome graphics or still frame photographs from a laser disc or CD-ROM into their hypertext applications. These technologies have greatly increased the role of the microcomputer in education and training. There still remain numerous applications for these tools which are yet to be explored. One of these exciting areas involves the use of three-dimensional computer graphics. An all digital platform increases application portability.

  2. Three-dimensional unsteady flow calculations in an advanced gas generator turbine

    NASA Technical Reports Server (NTRS)

    Rangwalla, Akil A.

    1993-01-01

    This paper deals with the application of a three-dimensional, unsteady Navier-Stokes code for predicting the unsteady flow in a single stage of an advanced gas generator turbine. The numerical method solves the three-dimensional thin-layer Navier-Stokes equations, using a system of overlaid grids, which allow for relative motion between the rotor and stator airfoils. Results in the form of time averaged pressures and pressure amplitudes on the airfoil surfaces will be shown. In addition, instantaneous contours of pressure, Mach number, etc. will be presented in order to provide a greater understanding of the inviscid as well as the viscous aspects of the flowfield. Also, relevant secondary flow features such as cross-plane velocity vectors and total pressure contours will be presented. Prior work in two-dimensions has indicated that for the advanced designs, the unsteady interactions can play a significant role in turbine performance. These interactions affect not only the stage efficiency but can substantially alter the time-averaged features of the flow. This work is a natural extension of the work done in two-dimensions and hopes to address some of the issues raised by the two-dimensional calculations. These calculations are being performed as an integral part of an actual design process and demonstrate the value of unsteady rotor-stator interaction calculations in the design of turbomachines.

  3. Mach 10 computational study of a three-dimensional scramjet inlet flow field

    NASA Technical Reports Server (NTRS)

    Holland, Scott D.

    1995-01-01

    The present work documents the computational results for a combined computational and experimental parametric study of the internal aerodynamics of a generic three-dimensional sidewall-compression scramjet inlet configuration at Mach 10. The three-dimensional Navier-Stokes code SCRAMIN was chosen for the computational portion of the study because it uses a well-known and well-proven numerical scheme and has shown favorable comparison with experiment at Mach numbers between 2 and 6. One advantage of CFD was that it provided flow field data for a detailed examination of the internal flow characteristics in addition to the surface properties. The experimental test matrix at Mach 10 included three geometric contraction ratios (3, 5, and 9), three Reynolds numbers (0.55 x 10(exp 6) per foot, 1.14 x 10(exp 6) per foot, and 2.15 x 10(exp 6) per foot), and three cowl positions (at the throat and two forward positions). Computational data for two of these configurations (the contraction ratio of 3, Re = 2.15 x 10(exp 6) per foot, at two cowl positions) are presented along with a detailed analysis of the flow interactions in successive computational planes.

  4. Mach 10 computational study of a three-dimensional scramjet inlet flow field

    NASA Technical Reports Server (NTRS)

    Holland, Scott D.

    1995-01-01

    The present work documents the computational results for a combined computational and experimental parametric study of the internal aerodynamics of a generic three-dimensional sidewall-compression scramjet inlet configuration at Mach 10. The three-dimensional Navier-Stokes code SCRAMIN was chosen for the computational portion of the study because it uses a well-known and well-proven numerical scheme and has shown favorable comparison with experiment at Mach numbers between 2 and 6. One advantage of CFD was that it provided flow field data for a detailed examination of the internal flow characteristics in addition to the surface properties. The experimental test matrix at mach 10 included three geometric contraction ratios (3, 5, and 9), three Reynolds numbers (0.55 x 10(exp 6) per foot, 1.14 x 10(exp 6) per foot, and 2.15 x 10(exp 6) per foot), and three cowl positions (at the throat and two forward positions). Computational data for two of these configurations (the contraction ratio of 3, Re = 2.15 x 10 (exp 6) per foot, at two cowl positions) are presented along with a detailed analysis of the flow interactions in successive computational planes.

  5. Three-dimensional ray-tracing model for the study of advanced refractive errors in keratoconus.

    PubMed

    Schedin, Staffan; Hallberg, Per; Behndig, Anders

    2016-01-20

    We propose a numerical three-dimensional (3D) ray-tracing model for the analysis of advanced corneal refractive errors. The 3D modeling was based on measured corneal elevation data by means of Scheimpflug photography. A mathematical description of the measured corneal surfaces from a keratoconus (KC) patient was used for the 3D ray tracing, based on Snell's law of refraction. A model of a commercial intraocular lens (IOL) was included in the analysis. By modifying the posterior IOL surface, it was shown that the imaging quality could be significantly improved. The RMS values were reduced by approximately 50% close to the retina, both for on- and off-axis geometries. The 3D ray-tracing model can constitute a basis for simulation of customized IOLs that are able to correct the advanced, irregular refractive errors in KC.

  6. Simulations of Failure via Three-Dimensional Cracking in Fuel Cladding for Advanced Nuclear Fuels

    SciTech Connect

    Lu, Hongbing; Bukkapatnam, Satish; Harimkar, Sandip; Singh, Raman; Bardenhagen, Scott

    2014-01-09

    Enhancing performance of fuel cladding and duct alloys is a key means of increasing fuel burnup. This project will address the failure of fuel cladding via three-dimensional cracking models. Researchers will develop a simulation code for the failure of the fuel cladding and validate the code through experiments. The objective is to develop an algorithm to determine the failure of fuel cladding in the form of three-dimensional cracking due to prolonged exposure under varying conditions of pressure, temperature, chemical environment, and irradiation. This project encompasses the following tasks: 1. Simulate 3D crack initiation and growth under instantaneous and/or fatigue loads using a new variant of the material point method (MPM); 2. Simulate debonding of the materials in the crack path using cohesive elements, considering normal and shear traction separation laws; 3. Determine the crack propagation path, considering damage of the materials incorporated in the cohesive elements to allow the energy release rate to be minimized; 4. Simulate the three-dimensional fatigue crack growth as a function of loading histories; 5. Verify the simulation code by comparing results to theoretical and numerical studies available in the literature; 6. Conduct experiments to observe the crack path and surface profile in unused fuel cladding and validate against simulation results; and 7. Expand the adaptive mesh refinement infrastructure parallel processing environment to allow adaptive mesh refinement at the 3D crack fronts and adaptive mesh merging in the wake of cracks. Fuel cladding is made of materials such as stainless steels and ferritic steels with added alloying elements, which increase stability and durability under irradiation. As fuel cladding is subjected to water, chemicals, fission gas, pressure, high temperatures, and irradiation while in service, understanding performance is essential. In the fast fuel used in advanced burner reactors, simulations of the nuclear

  7. Computer-assisted three-dimensional reconstruction of human dermal dendrocytes.

    PubMed

    Sueki, H; Telegan, B; Murphy, G F

    1995-11-01

    We attempted to characterize the three-dimensional structure of dermal dendrocytes and to clarify the spatial relationships between dermal dendrocytes and mast cells, macrophages, and nerves. Normal human adult skin (breast, n = 2) was routinely processed for electron microscopy. Every other section (about 50 per data set) was collected at 80-nm intervals traversing about 8 microns of tissue. Grids showing the same cells were photographed by electron microscopy at a magnification of 4000x. Based on the 10-20 photographs per data set, cell outlines were digitized into the reconstruction program at appropriate layers and aligned. Thin, elongated cytoplasmic "dendrites" of dermal dendrocytes in two-dimensional micrographs proved to be thin, membrane-bound flaps in three-dimensional reconstruction. For dermal dendrocytes concentrated about superficial vessels (perivascular dendrocytes), the flaps enshrouded the vessel wall, and for dermal dendrocytes directly beneath the epidermis (subepidermal dendrocytes), these flaps were aligned parallel to the dermal-epidermal junction. The three-dimensional feature of dermal dendrocytes (perivascular and subepidermal) is quite similar to that of perivascular adventitial veil cells, suggesting ultrastructurally identified perivascular dendrocytes and veil cells must be identical cells. In conventional ultrathin sections, 20-40% of perivascular dendrocytes and occasional subepidermal dendrocytes were closely associated with mast cells. When viewed by computer-assisted three-dimensional reconstruction, membrane flaps of dermal dendrocytes consistently shrouded mast cell membranes for 50-90% of their perimeter; mast cells resembled a ball in a baseball glove (dermal dendrocytes). Occasional dermal dendrocytes surrounded non-myelinated nerves in the superficial dermis. Membrane flaps also enabled dermal dendrocytes to present extensive areas to the plasma membranes of adjacent monocyte/macrophages. These findings indicate that dermal

  8. Anomalous Morphology of an Ectopic Tooth in the Maxillary Sinus on Three-Dimensional Computed Tomography Images

    PubMed Central

    Lai, Yee-Tak Alta; Luk, Yiu Shiobhon; Fung, Kai-Hung

    2013-01-01

    We describe a case of an incidentally-diagnosed ectopic tooth showing anomalous morphology in the maxillary antrum, using three-dimensional reconstruction of computed tomography images of the tooth obtained by multi-detector computed tomography. PMID:23705035

  9. Computer-assisted three-dimensional gait analysis of amphotericin-induced carpal lameness in horses.

    PubMed

    Peloso, J G; Stick, J A; Soutas-Little, R W; Caron, J C; DeCamp, C E; Leach, D H

    1993-09-01

    Motion of 6 clinically sound horses trotting at a speed of 4 m/s on a treadmill was captured by video cameras before and 9, 16, and 23 days after amphotericin-induced lameness to determine the quantitative variables of three-dimensional computer-assisted image analysis that objectively describe carpal lameness. Amphotericin-B was used to induce lameness, and phenylbutazone (2.2 mg/kg of body weight, PO, once) and butorphanol tartrate (0.1 mg/kg IM, q 6 h, to effect) were used to control discomfort. Four 60-Hz cameras were symmetrically placed around the treadmill to capture 6 seconds of images from retro-reflective spheres taped to the trotting horses. Images were transferred to a video-based digitizer and a computer work station, where 4 files of two-dimensional data were reduced to 1 file of three-dimensional data. The effect of lameness on motion analyzed was assessed by use of two-way ANOVA. Differences between means were assessed, using the Student-Newman-Keul's test (P < or = 0.05). Head and withers excursions, (dorsal vertical displacement of head and withers targets, respectively) during the sound forelimb support phase were increased significantly during all lameness measurement periods. Head excursion, but not withers excursion, during the lame forelimb support phase, was decreased significantly during all lameness measurement periods. Computer determinations of stride length swing phase, stance phase, forelimb abduction, and carpal and fetlock ranges of motion did not consistently characterize the lameness. It was concluded that three-dimensional computer-assisted image analysis could be used for objective lameness evaluation in horses and that head and withers excursions were the most consistent variables for assessing equine carpal lameness.

  10. Mechanically Self-Assembled, Three-Dimensional Graphene-Gold Hybrid Nanostructures for Advanced Nanoplasmonic Sensors.

    PubMed

    Leem, Juyoung; Wang, Michael Cai; Kang, Pilgyu; Nam, SungWoo

    2015-11-11

    Hybrid structures of graphene and metal nanoparticles (NPs) have been actively investigated as higher quality surface enhanced Raman spectroscopy (SERS) substrates. Compared with SERS substrates, which only contain metal NPs, the additional graphene layer provides structural, chemical, and optical advantages. However, the two-dimensional (2D) nature of graphene limits the fabrication of the hybrid structure of graphene and NPs to 2D. Introducing three-dimensionality to the hybrid structure would allow higher detection sensitivity of target analytes by utilizing the three-dimensional (3D) focal volume. Here, we report a mechanical self-assembly strategy to enable a new class of 3D crumpled graphene-gold (Au) NPs hybrid nanoplasmonic structures for SERS applications. We achieve a 3D crumpled graphene-Au NPs hybrid structure by the delamination and buckling of graphene on a thermally activated, shrinking polymer substrate. We also show the precise control and optimization of the size and spacing of integrated Au NPs on crumpled graphene and demonstrate the optimized NPs' size and spacing for higher SERS enhancement. The 3D crumpled graphene-Au NPs exhibits at least 1 order of magnitude higher SERS detection sensitivity than that of conventional, flat graphene-Au NPs. The hybrid structure is further adapted to arbitrary curvilinear structures for advanced, in situ, nonconventional, nanoplasmonic sensing applications. We believe that our approach shows a promising material platform for universally adaptable SERS substrate with high sensitivity.

  11. Lighting effects rendering in three-dimensional computer-generated holographic display

    NASA Astrophysics Data System (ADS)

    Zhang, Hao; Cao, Liangcai; Jin, Guofan

    2016-07-01

    We present a technique for generating three-dimensional (3-D) computer-generated holograms (CGHs) with realistic lighting effects based on a phase-only spatial light modulator (SLM). Phong reflection model is employed in the calculation of reflectance distribution for CGH synthesizing. Directional point-based algorithm produces realistic lighting effects of the 3-D scenes in processing the ambient, diffuse and specular reflections. A phase-only SLM is used to perform the optical experiments, and the results show that the proposed technique can perform quality reconstructions of the 3-D scenes with high optical efficiency and efficient utilization of the system space-bandwidth product.

  12. Three-dimensional computational study of asymmetric flows using Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Cheung, Y. K. (Editor); Lee, J. H. W. (Editor); Leung, A. Y. T. (Editor); Wong, Tin-Chee; Kandil, Osama A.; Liu, C. H.

    1992-01-01

    The unsteady, compressible, thin-layer Navier-Stokes equations are used to obtain three-dimensional, asymmetric, vortex-flow solutions around cones and cone-cylinder configurations. The equations are solved using an implicit, upwind, flux-difference splitting, finite-volume scheme. The computational applications cover asymmetric flows around a 5 semi-apex angle cone of unit length at various Reynolds number. Next, a cylindrical afterbody of various length is added to the conical forebody to study the effect of the length of cylindrical afterbody on the flow asymmetry. All the asymmetric flow solutions are obtained by using a short-duration side-slip disturbance.

  13. Computation of zero. beta. three-dimensional equilibria with magnetic islands

    SciTech Connect

    Reiman, A.H.; Greenside, H.S.

    1989-01-01

    A Picard iteration scheme has been implemented for the computation of toroidal, fully three-dimensional, zero ..beta.. equilibria with islands and stochastic regions. Representation of the variables in appropriate coordinate systems has been found to be a key to making the scheme work well. In particular, different coordinate systems are used for solving magnetic differential equations and Ampere's law. The current profile is adjusted when islands and stochastic regions appear. An underrelaxation of the current profile modifications is generally needed for stable iteration of the algorithm. Some examples of equilibrium calculations are presented. 16 refs., 6 figs., 1 tab.

  14. Use of CYBER 203 and CYBER 205 computers for three-dimensional transonic flow calculations

    NASA Astrophysics Data System (ADS)

    Melson, N. D.; Keller, J. D.

    1983-04-01

    Experiences are discussed for modifying two three-dimensional transonic flow computer programs (FLO 22 and FLO 27) for use on the CDC CYBER 203 computer system. Both programs were originally written for use on serial machines. Several methods were attempted to optimize the execution of the two programs on the vector machine: leaving the program in a scalar form (i.e., serial computation) with compiler software used to optimize and vectorize the program, vectorizing parts of the existing algorithm in the program, and incorporating a vectorizable algorithm (ZEBRA I or ZEBRA II) in the program. Comparison runs of the programs were made on CDC CYBER 175. CYBER 203, and two pipe CDC CYBER 205 computer systems.

  15. Use of CYBER 203 and CYBER 205 computers for three-dimensional transonic flow calculations

    NASA Technical Reports Server (NTRS)

    Melson, N. D.; Keller, J. D.

    1983-01-01

    Experiences are discussed for modifying two three-dimensional transonic flow computer programs (FLO 22 and FLO 27) for use on the CDC CYBER 203 computer system. Both programs were originally written for use on serial machines. Several methods were attempted to optimize the execution of the two programs on the vector machine: leaving the program in a scalar form (i.e., serial computation) with compiler software used to optimize and vectorize the program, vectorizing parts of the existing algorithm in the program, and incorporating a vectorizable algorithm (ZEBRA I or ZEBRA II) in the program. Comparison runs of the programs were made on CDC CYBER 175. CYBER 203, and two pipe CDC CYBER 205 computer systems.

  16. Three-dimensional morphology of heel fat pad: an in vivo computed tomography study

    PubMed Central

    Campanelli, Valentina; Fantini, Massimiliano; Faccioli, Niccolò; Cangemi, Alessio; Pozzo, Antonio; Sbarbati, Andrea

    2011-01-01

    Heel fat pad cushioning efficiency is the result of its structure, shape and thickness. However, while a number of studies have investigated heel fat pad (HFP) anatomy, structural behavior and material properties, no previous study has described its three-dimensional morphology in situ. The assessment of the healthy, unloaded, three-dimensional morphology of heel pad may contribute to deepen the understanding of its role and behavior during locomotion. It is the basis for the assessment of possible HFP morphological modifications due to changes in the amount or distribution of the loads normally sustained by the foot. It may also help in guiding the surgical reconstruction of the pad and in improving footwear design, as well as in developing a correct heel pad geometry for finite element models of the foot. Therefore the purpose of this study was to obtain a complete analysis of HFP three-dimensional morphology in situ. The right foot of nine healthy volunteers was scanned with computed tomography. A methodological approach that maximizes reliability and repeatability of the data was developed by building a device to lock the foot in a neutral position with respect to the scan planes during image acquisition. Scan data were used to reconstruct virtual three-dimensional models for both the calcaneus and HFP. A set of virtual coronal and axial sections were extracted from the three-dimensional model of each HFP and processed to extract a set of one- and two-dimensional morphometrical measurements for a detailed description of heel pad morphology. The tissue exhibited a consistent and sophisticated morphology that may reflect the biomechanics of the foot support. HFP was found to be have a crest on its anterior dorsal surface, flanges on the sides and posteriorly, and a thick portion that reached and covered the posterior surface of the calcaneus and the achilles tendon insertion. Its anterior internal portion was thinner and a lump of fat was consistently present in

  17. Computer prediction of three-dimensional potential flow fields in which aircraft propellers operate: Computer program description and users manual

    NASA Technical Reports Server (NTRS)

    Jumper, S. J.

    1979-01-01

    A method was developed for predicting the potential flow velocity field at the plane of a propeller operating under the influence of a wing-fuselage-cowl or nacelle combination. A computer program was written which predicts the three dimensional potential flow field. The contents of the program, its input data, and its output results are described.

  18. Advanced numerical methods for three dimensional two-phase flow calculations

    SciTech Connect

    Toumi, I.; Caruge, D.

    1997-07-01

    This paper is devoted to new numerical methods developed for both one and three dimensional two-phase flow calculations. These methods are finite volume numerical methods and are based on the use of Approximate Riemann Solvers concepts to define convective fluxes versus mean cell quantities. The first part of the paper presents the numerical method for a one dimensional hyperbolic two-fluid model including differential terms as added mass and interface pressure. This numerical solution scheme makes use of the Riemann problem solution to define backward and forward differencing to approximate spatial derivatives. The construction of this approximate Riemann solver uses an extension of Roe`s method that has been successfully used to solve gas dynamic equations. As far as the two-fluid model is hyperbolic, this numerical method seems very efficient for the numerical solution of two-phase flow problems. The scheme was applied both to shock tube problems and to standard tests for two-fluid computer codes. The second part describes the numerical method in the three dimensional case. The authors discuss also some improvements performed to obtain a fully implicit solution method that provides fast running steady state calculations. Such a scheme is not implemented in a thermal-hydraulic computer code devoted to 3-D steady-state and transient computations. Some results obtained for Pressurised Water Reactors concerning upper plenum calculations and a steady state flow in the core with rod bow effect evaluation are presented. In practice these new numerical methods have proved to be stable on non staggered grids and capable of generating accurate non oscillating solutions for two-phase flow calculations.

  19. Fiber pushout test: A three-dimensional finite element computational simulation

    NASA Technical Reports Server (NTRS)

    Mital, Subodh K.; Chamis, Christos C.

    1990-01-01

    A fiber pushthrough process was computationally simulated using three-dimensional finite element method. The interface material is replaced by an anisotropic material with greatly reduced shear modulus in order to simulate the fiber pushthrough process using a linear analysis. Such a procedure is easily implemented and is computationally very effective. It can be used to predict fiber pushthrough load for a composite system at any temperature. The average interface shear strength obtained from pushthrough load can easily be separated into its two components: one that comes from frictional stresses and the other that comes from chemical adhesion between fiber and the matrix and mechanical interlocking that develops due to shrinkage of the composite because of phase change during the processing. Step-by-step procedures are described to perform the computational simulation, to establish bounds on interfacial bond strength and to interpret interfacial bond quality.

  20. An Improved Treatment of External Boundary for Three-Dimensional Flow Computations

    NASA Technical Reports Server (NTRS)

    Tsynkov, Semyon V.; Vatsa, Veer N.

    1997-01-01

    We present an innovative numerical approach for setting highly accurate nonlocal boundary conditions at the external computational boundaries when calculating three-dimensional compressible viscous flows over finite bodies. The approach is based on application of the difference potentials method by V. S. Ryaben'kii and extends our previous technique developed for the two-dimensional case. The new boundary conditions methodology has been successfully combined with the NASA-developed code TLNS3D and used for the analysis of wing-shaped configurations in subsonic and transonic flow regimes. As demonstrated by the computational experiments, the improved external boundary conditions allow one to greatly reduce the size of the computational domain while still maintaining high accuracy of the numerical solution. Moreover, they may provide for a noticeable speedup of convergence of the multigrid iterations.

  1. Efficient computation of the stability of three-dimensional compressible boundary layers

    NASA Technical Reports Server (NTRS)

    Malik, M. R.; Orszag, S. A.

    1981-01-01

    Methods for the computer analysis of the stability of three-dimensional compressible boundary layers are discussed and the user-oriented Compressible Stability Analysis (COSAL) computer code is described. The COSAL code uses a matrix finite-difference method for local eigenvalue solution when a good guess for the eigenvalue is available and is significantly more computationally efficient than the commonly used initial-value approach. The local eigenvalue search procedure also results in eigenfunctions and, at little extra work, group velocities. A globally convergent eigenvalue procedure is also developed which may be used when no guess for the eigenvalue is available. The global problem is formulated in such a way that no unstable spurious modes appear so that the method is suitable for use in a black-box stability code. Sample stability calculations are presented for the boundary layer profiles of an LFC swept wing.

  2. Computational Simulation of Damage Propagation in Three-Dimensional Woven Composites

    NASA Technical Reports Server (NTRS)

    Huang, Dade; Minnetyan, Levon

    2005-01-01

    Three dimensional (3D) woven composites have demonstrated multi-directional properties and improved transverse strength, impact resistance, and shear characteristics. The objective of this research is to develop a new model for predicting the elastic constants, hygrothermal effects, thermomechanical response, and stress limits of 3D woven composites; and to develop a computational tool to facilitate the evaluation of 3D woven composite structures with regard to damage tolerance and durability. Fiber orientations of weave and braid patterns are defined with reference to composite structural coordinates. Orthotropic ply properties and stress limits computed via micromechanics are transformed to composite structural coordinates and integrated to obtain the 3D properties. The various stages of degradation, from damage initiation to collapse of structures, in the 3D woven structures are simulated for the first time. Three dimensional woven composite specimens with various woven patterns under different loading conditions, such as tension, compression, bending, and shear are simulated in the validation process of this research. Damage initiation, growth, accumulation, and propagation to fracture are included in these simulations.

  3. A computational approach to continuum damping of Alfven waves in two and three-dimensional geometry

    SciTech Connect

    Koenies, Axel; Kleiber, Ralf

    2012-12-15

    While the usual way of calculating continuum damping of global Alfven modes is the introduction of a small artificial resistivity, we present a computational approach to the problem based on a suitable path of integration in the complex plane. This approach is implemented by the Riccati shooting method and it is shown that it can be transferred to the Galerkin method used in three-dimensional ideal magneto-hydrodynamics (MHD) codes. The new approach turns out to be less expensive with respect to resolution and computation time than the usual one. We present an application to large aspect ratio tokamak and stellarator equilibria retaining a few Fourier harmonics only and calculate eigenfunctions and continuum damping rates. These may serve as an input for kinetic MHD hybrid models making it possible to bypass the problem of having singularities on the path of integration on one hand and considering continuum damping on the other.

  4. The Proteus Navier-Stokes code. [two and three dimensional computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Towne, Charles E.; Schwab, John R.

    1992-01-01

    An effort is currently underway at NASA Lewis to develop two and three dimensional Navier-Stokes codes, called Proteus, for aerospace propulsion applications. Proteus solves the Reynolds-averaged, unsteady, compressible Navier-Stokes equations in strong conservation law form. Turbulence is modeled using a Baldwin-Lomax based algebraic eddy viscosity model. In addition, options are available to solve thin layer or Euler equations, and to eliminate the energy equation by assuming constant stagnation enthalpy. An extensive series of validation cases have been run, primarily using the two dimensional planar/axisymmetric version of the code. Several flows were computed that have exact solution such as: fully developed channel and pipe flow; Couette flow with and without pressure gradients; unsteady Couette flow formation; flow near a suddenly accelerated flat plate; flow between concentric rotating cylinders; and flow near a rotating disk. The two dimensional version of the Proteus code has been released, and the three dimensional code is scheduled for release in late 1991.

  5. Advanced treatment of biologically pretreated coking wastewater by a bipolar three-dimensional electrode reactor.

    PubMed

    Zhang, Chunhui; Lin, Hui; Chen, Jun; Zhang, Wenwen

    2013-01-01

    Electrochemical oxidation is a promising technology for the treatment ofbio-refractory wastewater. In this research, advanced treatment of coking wastewater which had previously undergone A/O (anaerobic-aerobic biological) treatment was investigated over Ti/RuO2 x IrO2 anode, stainless steel cathode and coke powder particle electrodes which were packed into the electrodes in a bipolar three-dimensional electrode reactor (BTDR). The results showed that the removal efficiency of COD and ammonia nitrogen increased with applied current density. The main influencing factors of BTDR were evaluated by an orthogonal test, including reaction time, plate distance, current density, plate amounts and aeration flow rate. With reaction time of 60 min, plate distance of 1.0 cm, current density of 20 mA/cm2 and plate amounts of four pairs, most of the contaminants in coking wastewater can be remediated by BTDR, which can then meet the discharge limit for coking wastewater in China. For organic pollutants, 12 kinds of organic pollutants can be completely removed, and the removal efficiencies of 11 kinds of organic pollutants are between 13.3 and 70.3% by advanced treatment with BTDR. We conclude that there is great potential for BTDR in engineering applications as a final treatment for coking wastewater. PMID:24350493

  6. Three-Dimensional Computed Tomography as a Method for Finding Die Attach Voids in Diodes

    NASA Technical Reports Server (NTRS)

    Brahm, E. N.; Rolin, T. D.

    2010-01-01

    NASA analyzes electrical, electronic, and electromechanical (EEE) parts used in space vehicles to understand failure modes of these components. The diode is an EEE part critical to NASA missions that can fail due to excessive voiding in the die attach. Metallography, one established method for studying the die attach, is a time-intensive, destructive, and equivocal process whereby mechanical grinding of the diodes is performed to reveal voiding in the die attach. Problems such as die attach pull-out tend to complicate results and can lead to erroneous conclusions. The objective of this study is to determine if three-dimensional computed tomography (3DCT), a nondestructive technique, is a viable alternative to metallography for detecting die attach voiding. The die attach voiding in two- dimensional planes created from 3DCT scans was compared to several physical cross sections of the same diode to determine if the 3DCT scan accurately recreates die attach volumetric variability

  7. Three-dimensional computational prediction of cerebrospinal fluid flow in the human brain.

    PubMed

    Sweetman, Brian; Xenos, Michalis; Zitella, Laura; Linninger, Andreas A

    2011-02-01

    A three-dimensional model of the human cerebrospinal fluid (CSF) spaces is presented. Patient-specific brain geometries were reconstructed from magnetic resonance images. The model was validated by comparing the predicted flow rates with Cine phase-contrast MRI measurements. The model predicts the complex CSF flow patterns and pressures in the ventricular system and subarachnoid space of a normal subject. The predicted maximum rostral to caudal CSF flow in the pontine cistern precedes the maximum rostral to caudal flow in the ventricles by about 10% of the cardiac cycle. This prediction is in excellent agreement with the subject-specific flow data. The computational results quantify normal intracranial dynamics and provide a basis for analyzing diseased intracranial dynamics.

  8. Investigation and evaluation of a computer program to minimize three-dimensional flight time tracks

    NASA Technical Reports Server (NTRS)

    Parke, F. I.

    1981-01-01

    The program for the DC 8-D3 flight planning was slightly modified for the three dimensional flight planning for DC 10 aircrafts. Several test runs of the modified program over the North Atlantic and North America were made for verifying the program. While geopotential height and temperature were used in a previous program as meteorological data, the modified program uses wind direction and speed and temperature received from the National Weather Service. A scanning program was written to collect required weather information from the raw data received in a packed decimal format. Two sets of weather data, the 12-hour forecast and 24-hour forecast based on 0000 GMT, are used for dynamic processes in testruns. In order to save computing time only the weather data of the North Atlantic and North America is previously stored in a PCF file and then scanned one by one.

  9. Simulation of radiation effects on three-dimensional computer optical memories

    NASA Technical Reports Server (NTRS)

    Moscovitch, M.; Emfietzoglou, D.

    1997-01-01

    A model was developed to simulate the effects of heavy charged-particle (HCP) radiation on the information stored in three-dimensional computer optical memories. The model is based on (i) the HCP track radial dose distribution, (ii) the spatial and temporal distribution of temperature in the track, (iii) the matrix-specific radiation-induced changes that will affect the response, and (iv) the kinetics of transition of photochromic molecules from the colored to the colorless isomeric form (bit flip). It is shown that information stored in a volume of several nanometers radius around the particle's track axis may be lost. The magnitude of the effect is dependent on the particle's track structure.

  10. Three-dimensional reconstruction of New Zealand rabbit antebrachium by multidetector computed tomography

    PubMed Central

    Özkadif, S; Eken, E; Beşoluk, K; Dayan, M. O.

    2015-01-01

    The aim of this study was to reveal biometric peculiarities of New Zealand white rabbit antebrachium (radius and ulna) by means of three-dimensional (3D) reconstruction of multidetector computed tomography (MDCT) images. Under general anesthesia, the antebrachiums of a total of sixteen rabbits of both sexes were scanned with a general diagnostic MDCT. Biometric measurements of the reconstructed models from high resolution MDCT images were analyzed statistically. Consequently, when biometric measurement values of corresponding bones of antebrachium were compared, it was revealed that there was no statistical significance within both sexes but there were statistically important differences between both sexes in some biometric measurements. It has been suggested that the results from the study can shed light on future studies on the skeletal system and can form a modern point of view to anatomical education. PMID:27175177

  11. User's manual for PELE3D: a computer code for three-dimensional incompressible fluid dynamics

    SciTech Connect

    McMaster, W H

    1982-05-07

    The PELE3D code is a three-dimensional semi-implicit Eulerian hydrodynamics computer program for the solution of incompressible fluid flow coupled to a structure. The fluid and coupling algorithms have been adapted from the previously developed two-dimensional code PELE-IC. The PELE3D code is written in both plane and cylindrical coordinates. The coupling algorithm is general enough to handle a variety of structural shapes. The free surface algorithm is able to accommodate a top surface and several independent bubbles. The code is in a developmental status since all the intended options have not been fully implemented and tested. Development of this code ended in 1980 upon termination of the contract with the Nuclear Regulatory Commission.

  12. Numerical computation of multishocked, three-dimensional supersonic flow fields with real gas effects.

    NASA Technical Reports Server (NTRS)

    Kutler, P.; Reinhardt, W. A.; Warming, R. F.

    1972-01-01

    A computational procedure is presented which is capable of determining the supersonic flow field surrounding three-dimensional wing-body configurations such as a delta-wing space shuttle. The governing equations in conservation-law form are solved by a finite difference method using a second-order noncentered algorithm between the body and the outermost shock wave, which is treated as a sharp discontinuity. Secondary shocks which form between these boundaries are captured automatically, and the intersection of these shocks with the bow shock posed no difficulty. Resulting flow fields about typical blunt nose shuttle-like configurations at angle of attack are presented. The differences between perfect and real gas effects for high Mach number flows are shown.

  13. Three-dimensional object motion and velocity estimation using a single computational RGB-D camera.

    PubMed

    Lee, Seungwon; Jeong, Kyungwon; Park, Jinho; Paik, Joonki

    2015-01-08

    In this paper, a three-dimensional (3D) object moving direction and velocity estimation method is presented using a dual off-axis color-filtered aperture (DCA)-based computational camera. Conventional object tracking methods provided only two-dimensional (2D) states of an object in the image for the target representation. The proposed method estimates depth information in the object region from a single DCA camera that transforms 2D spatial information into 3D model parameters of the object. We also present a calibration method of the DCA camera to estimate the entire set of camera parameters for a practical implementation. Experimental results show that the proposed DCA-based color and depth (RGB-D) camera can calculate the 3D object moving direction and velocity of a randomly moving object in a single-camera framework.

  14. A numerical method for computing three dimensional viscous supersonic flow fields about slender bodies

    NASA Technical Reports Server (NTRS)

    Walitt, L.; Trulio, J. G.

    1971-01-01

    A numerical method is presented for the calculation of steady, three-dimensional, viscous, compressible flow fields about slender bodies at angle of attack and at supersonic speeds. Approximations are introduced in modeling the flow in the longitudinal direction. Accordingly, the flow fields calculated with the program were computed with a model that permits viscous crossflow together with inviscid axial flow. An analysis of the errors introduced by such a treatment is presented. Numerical calculations were made and compared with experimental results for an ogive-cylinder and an airplane fuselage configuration. Generally, good agreement with experiment was obtained. However, boundary layer separation and body vortex positions differed from experimental locations on the ogive-cylinder, and the shock induced by the fuselage canopy was predicted at a slightly different location.

  15. A three-dimensional meso-scale computer modeling for bubble growth in metals

    NASA Astrophysics Data System (ADS)

    Suzudo, T.; Kaburaki, H.; Itakura, M.; Wakai, E.

    2008-07-01

    A new meso-scale three-dimensional computer model has been proposed to enhance the modeling capability of the bubble growth in metals, particularly helium bubble growth under conditions of post-irradiation annealing. We assume that the bubble growth is modeled by a process driven by energy minimization of the surface energy and thermal fluctuation within the framework of a Monte Carlo simulation method. We found that it is possible to simulate growing bubbles following the ideal gas law and in equilibrium with the surface tension. The simulation results show good agreement with some experimental evidence, in particular, of the log-normal bubble-size distribution. The extension of the model to the bubble growth on grain boundaries with reference to helium embrittlement has succeeded in reproducing a particular bubble shape observed in experiments.

  16. Three-dimensional graphics simulator for testing mine machine computer-controlled algorithms -- phase 1 development

    SciTech Connect

    Ambrose, D.H. )

    1993-01-01

    Using three-dimensional (3-D) graphics computing to evaluate new technologies for computer-assisted mining systems illustrates how these visual techniques can redefine the way researchers look at raw scientific data. The US Bureau of Mines is using 3-D graphics computing to obtain cheaply, easily, and quickly information about the operation and design of current and proposed mechanical coal and metal-nonmetal mining systems. Bureau engineers developed a graphics simulator for a continuous miner that enables a realistic test for experimental software that controls the functions of a machine. Some of the specific simulated functions of the continuous miner are machine motion, appendage motion, machine position, and machine sensors. The simulator uses data files generated in the laboratory or mine using a computer-assisted mining machine. The data file contains information from a laser-based guidance system and a data acquisition system that records all control commands given to a computer-assisted mining machine. This report documents the first phase in developing the simulator and discusses simulator requirements, features of the initial simulator, and several examples of its application. During this endeavor, Bureau engineers discovered and appreciated the simulator's potential to assist their investigations of machine controls and navigation systems.

  17. A computational investigation of the three-dimensional unsteady aerodynamics of Drosophila hovering and maneuvering.

    PubMed

    Ramamurti, Ravi; Sandberg, William C

    2007-03-01

    Three-dimensional unsteady computations of the flow past a fruit fly Drosophila under hovering and free flight conditions are computed. The kinematics of the wings and the body of the fruit fly are prescribed from experimental observations. The computed unsteady lift and thrust forces are validated with experimental results and are in excellent agreement. The unsteady aerodynamic origin of the time-varying yaw moment is identified. The differences in the kinematics between the right and the left wings show that subtle change in the stroke angle and deviation angle can result in the yaw moment for the turning maneuver. The computed yaw moment reaches a peak value at the beginning of the maneuver and remains positive throughout the remainder of the maneuver. The origin of the yaw moment is investigated by computing the center of pressures on each wing and the individual moment arms. This investigation leads to the conclusion that it is the forward force and a component of the lift force that combine to produce the turning moment while the side force alone produces the restoring torque during the maneuver. The vorticity shed from the wing's leading edge and the tips show a loop like structure that during stroke reversals pinches off into Lambda-like structures that have not been previously observed in the wakes of flapping fliers.

  18. Validity of three-dimensional computed tomography measurements for Le Fort I osteotomy.

    PubMed

    Gaia, B F; Pinheiro, L R; Umetsubo, O S; Costa, F F; Cavalcanti, M G P

    2014-02-01

    The purpose of this study was to test the precision and accuracy of three-dimensional (3D) linear measurements for Le Fort I osteotomy, obtained from multi-slice computed tomography (MSCT) and cone beam computed tomography (CBCT) scans. The study population consisted of 11 dried skulls submitted to 64-row MSCT and CBCT scans. Three-dimensional reconstructed images (3D-CT) were generated, and linear measurements (n=11) based on anatomical structures and landmarks of interest for Le Fort I osteotomy were performed independently by two oral and maxillofacial radiologists, twice each, using Vitrea software; this allows true 3D measurement on 3D-CT images. The results demonstrated no statistically significant differences between the inter-examiner and intra-examiner analyses, and physical and true 3D linear measurements using MSCT and CBCT images. Regarding examiner accuracy, no statistically significant differences were found for the comparisons among the physical and the MSCT and the CBCT linear measurements by either examiner. For examiners 1 and 2, the analysis intra-examiner correlation coefficient ranged from 0.87 to 0.96 and 0.82 to 0.98, respectively, using MSCT, and from 0.84 to 0.98 and 0.80 to 0.98, respectively, using CBCT, indicating almost perfect agreement for all analyses performed. 3D linear measurements obtained from MSCT and CBCT images were considered precise and accurate for Le Fort I osteotomy and thus accurate and helpful for Le Fort I osteotomy planning.

  19. External Boundary Conditions for Three-Dimensional Problems of Computational Aerodynamics

    NASA Technical Reports Server (NTRS)

    Tsynkov, Semyon V.

    1997-01-01

    We consider an unbounded steady-state flow of viscous fluid over a three-dimensional finite body or configuration of bodies. For the purpose of solving this flow problem numerically, we discretize the governing equations (Navier-Stokes) on a finite-difference grid. The grid obviously cannot stretch from the body up to infinity, because the number of the discrete variables in that case would not be finite. Therefore, prior to the discretization we truncate the original unbounded flow domain by introducing some artificial computational boundary at a finite distance of the body. Typically, the artificial boundary is introduced in a natural way as the external boundary of the domain covered by the grid. The flow problem formulated only on the finite computational domain rather than on the original infinite domain is clearly subdefinite unless some artificial boundary conditions (ABC's) are specified at the external computational boundary. Similarly, the discretized flow problem is subdefinite (i.e., lacks equations with respect to unknowns) unless a special closing procedure is implemented at this artificial boundary. The closing procedure in the discrete case is called the ABC's as well. In this paper, we present an innovative approach to constructing highly accurate ABC's for three-dimensional flow computations. The approach extends our previous technique developed for the two-dimensional case; it employs the finite-difference counterparts to Calderon's pseudodifferential boundary projections calculated in the framework of the difference potentials method (DPM) by Ryaben'kii. The resulting ABC's appear spatially nonlocal but particularly easy to implement along with the existing solvers. The new boundary conditions have been successfully combined with the NASA-developed production code TLNS3D and used for the analysis of wing-shaped configurations in subsonic (including incompressible limit) and transonic flow regimes. As demonstrated by the computational experiments

  20. Turning intractable counting into sampling: Computing the configurational entropy of three-dimensional jammed packings.

    PubMed

    Martiniani, Stefano; Schrenk, K Julian; Stevenson, Jacob D; Wales, David J; Frenkel, Daan

    2016-01-01

    We present a numerical calculation of the total number of disordered jammed configurations Ω of N repulsive, three-dimensional spheres in a fixed volume V. To make these calculations tractable, we increase the computational efficiency of the approach of Xu et al. [Phys. Rev. Lett. 106, 245502 (2011)10.1103/PhysRevLett.106.245502] and Asenjo et al. [Phys. Rev. Lett. 112, 098002 (2014)10.1103/PhysRevLett.112.098002] and we extend the method to allow computation of the configurational entropy as a function of pressure. The approach that we use computes the configurational entropy by sampling the absolute volume of basins of attraction of the stable packings in the potential energy landscape. We find a surprisingly strong correlation between the pressure of a configuration and the volume of its basin of attraction in the potential energy landscape. This relation is well described by a power law. Our methodology to compute the number of minima in the potential energy landscape should be applicable to a wide range of other enumeration problems in statistical physics, string theory, cosmology, and machine learning that aim to find the distribution of the extrema of a scalar cost function that depends on many degrees of freedom. PMID:26871142

  1. High Speed Data Acquisition System for Three-Dimensional X-Ray and Neutron Computed Tomography

    SciTech Connect

    Davis, A.W.; Claytor, T.N.; Sheats, M.J.

    1999-07-01

    Computed tomography for nondestructive evaluation applications has been limited by system cost, resolution, and time requirements for three-dimensional data sets. FlashCT (Flat panel Amorphous Silicon High-Resolution Computed Tomography) is a system developed at Los Alamos National Laboratory to address these three problems. Developed around a flat panel amorphous silicon detector array, FlashCT is suitable for low to medium energy x-ray and neutron computed tomography at 127-micron resolution. Overall system size is small, allowing rapid transportation to a variety of radiographic sources. System control software was developed in LabVIEW for Windows NT to allow multithreading of data acquisition, data correction, and staging motor control. The system control software simplifies data collection and allows fully automated control of the data acquisition process, leading toward remote or unattended operation. The first generation of the FlashCT Data Acquisition System was completed in Au gust 1998, and since that time the system has been tested using x-ray sources ranging in energy from 60 kV to 20MV. The system has also been used to collect data for thermal neutron computed tomography at Los Alamos Neutron Science Center (LANSCE). System improvements have been proposed to provide faster data collection and greater dynamic range during data collection.

  2. Computational models for the analysis of three-dimensional internal and exhaust plume flowfields

    NASA Technical Reports Server (NTRS)

    Dash, S. M.; Delguidice, P. D.

    1977-01-01

    This paper describes computational procedures developed for the analysis of three-dimensional supersonic ducted flows and multinozzle exhaust plume flowfields. The models/codes embodying these procedures cater to a broad spectrum of geometric situations via the use of multiple reference plane grid networks in several coordinate systems. Shock capturing techniques are employed to trace the propagation and interaction of multiple shock surfaces while the plume interface, separating the exhaust and external flows, and the plume external shock are discretely analyzed. The computational grid within the reference planes follows the trace of streamlines to facilitate the incorporation of finite-rate chemistry and viscous computational capabilities. Exhaust gas properties consist of combustion products in chemical equilibrium. The computational accuracy of the models/codes is assessed via comparisons with exact solutions, results of other codes and experimental data. Results are presented for the flows in two-dimensional convergent and divergent ducts, expansive and compressive corner flows, flow in a rectangular nozzle and the plume flowfields for exhausts issuing out of single and multiple rectangular nozzles.

  3. Turning intractable counting into sampling: Computing the configurational entropy of three-dimensional jammed packings

    NASA Astrophysics Data System (ADS)

    Martiniani, Stefano; Schrenk, K. Julian; Stevenson, Jacob D.; Wales, David J.; Frenkel, Daan

    2016-01-01

    We present a numerical calculation of the total number of disordered jammed configurations Ω of N repulsive, three-dimensional spheres in a fixed volume V . To make these calculations tractable, we increase the computational efficiency of the approach of Xu et al. [Phys. Rev. Lett. 106, 245502 (2011), 10.1103/PhysRevLett.106.245502] and Asenjo et al. [Phys. Rev. Lett. 112, 098002 (2014), 10.1103/PhysRevLett.112.098002] and we extend the method to allow computation of the configurational entropy as a function of pressure. The approach that we use computes the configurational entropy by sampling the absolute volume of basins of attraction of the stable packings in the potential energy landscape. We find a surprisingly strong correlation between the pressure of a configuration and the volume of its basin of attraction in the potential energy landscape. This relation is well described by a power law. Our methodology to compute the number of minima in the potential energy landscape should be applicable to a wide range of other enumeration problems in statistical physics, string theory, cosmology, and machine learning that aim to find the distribution of the extrema of a scalar cost function that depends on many degrees of freedom.

  4. Comparison between computations and experimental data in unsteady three-dimensional transonic aerodynamics, including aeroelastic applications

    NASA Technical Reports Server (NTRS)

    Guruswamy, P.; Goorjian, P. M.

    1982-01-01

    Comparisons were made of computed and experimental data in three-dimensional unsteady transonic aerodynamics, including aeroelastic applications. The computer code LTRAN3, which is based on small-disturbance aerodynamic theory, was used to obtain the aerodynamic data. A procedure based on the U-g method was developed to compute flutter boundaries by using the unsteady aerodynamic coefficients obtained from LTRAN3. The experimental data were obtained from available NASA publications. All the studies were conducted for thin, unswept, rectangular wings with circular-arc cross sections. Numerical and experimental steady and unsteady aerodynamic data were compared for a wing with an aspect ratio of 3 and a thickness ratio of 5% at Mach numbers of 0.7 and 0.9. Flutter data were compared for a wing with an aspect ratio of 5. Two thickness ratios, 6% at Mach numbers of 0.715, 0.851, and 0.913, and 4% at Mach number of 0.904, were considered. Based on the unsteady aerodynamic data obtained from LTRAN3, flutter boundaries were computed; they were compared with those obtained from experiments and the code NASTRAN, which uses linear aerodynamics.

  5. Computer-assisted morphometry: point, intersection, and profile counting and three-dimensional reconstruction.

    PubMed

    Hyde, D M; Magliano, D J; Reus, E; Tyler, N K; Nichols, S; Tyler, W S

    1992-06-01

    The use of computers in morphometry can involve 1) automated image analysis, semiautomated image analysis and point, intersection, intercept and profile counts of two-dimensional images on tissue sections with mathematical extrapolation to the third dimension, 2) direct measurement of volumes, surfaces, lengths, and curvature using x,y,z coordinates of serial sectioned images, or 3) stereologic techniques and serial sections which is a combination of 1 and 2 above. Automated and semiautomated image analysis are generally restricted to specimens that are characterized by differential contrast such as interalveolar septa in the lung or histochemically stained mucous granules in pulmonary epithelium. Point, intersection, and profile counts using hand-held, notebook PCs, portable PCs, or standard PCs and MS-DOS-based application programs are extremely efficient, precise, affordable, and convenient methods of quantitating average values of a population. When morphometric measurements of individual structures are required, computer-assisted three-dimensional reconstruction using x,y,z coordinates of the surface outline from serial sections is a tedious yet precise method. We describe a computer program that efficiently estimates mean caliper diameter, volume, and surface area with less than five percent error with five sections per structure. We also describe a program that does digital image subtraction on serial sections, superimposes digitally generated test systems on biological images, and accumulates point, intersection, and profile counts using a Macintosh II series computer.

  6. Advances in three-dimensional integration technologies in support of infrared focal plane arrays

    NASA Astrophysics Data System (ADS)

    Temple, D. S.; Vick, E. P.; Malta, D.; Lueck, M. R.; Skokan, M. R.; Masterjohn, C. M.; Muzilla, M. S.

    2015-01-01

    Staring infrared focal plane arrays (FPAs) require pixel-level, three-dimensional (3D) integration with silicon readout integrated circuits (ROICs) that provide detector bias, integrate detector current, and may further process the signals. There is an increased interest in ROIC technology as a result of two trends in the evolution of infrared FPAs. The first trend involves decreasing the FPA pixel size, which leads to the increased information content within the same FPA die size. The second trend involves the desire to enhance signal processing capability at the FPA level, which opens the door to the detector behaving like a smart peripheral rather than a passive component—with complex signal processing functions being executed on, rather than off, the FPA chip. In this paper, we review recent advances in 3D integration process technologies that support these key trends in the development of infrared FPAs. Specifically, we discuss approaches in which the infrared sensor is integrated with 3D ROIC stacks composed of multiple layers of silicon circuitry interconnected using metal-filled through-silicon vias. We describe the continued development of the 3D integration technology and summarize key demonstrations that show its viability for pixels as small as 5 microns.

  7. Three-dimensional modeling of an ideal nozzle for advanced propulsion

    NASA Astrophysics Data System (ADS)

    Schillo, Kevin

    Advanced propulsion systems such as pulsed fission and fusion rockets hold the potential for opening up the solar system in ways few other propulsion technologies can. The University of Alabama in Huntsville is exploring one such concept in the form of pulsed z-pinch fusion propulsion. One of the technical hurdles to utilizing any pulsed fusion concept is the conversion from an isotropic expansion of a plasma into directed motion to produce thrust. This thesis investigates three dimensional modeling of pulsed nozzle performance in which the initial gas is a cylindrical gas column, emulating the initial conditions found in pulsed plasma discharges common in fusion experiments. Two nozzle geometries were investigated, a pusher plate and a hemispherical nozzle. Simulations of these systems were conducted using SPFMax, a recently developed smoothed particle hydrodynamics code (SPH). The SPH method was chosen because it is naturally adaptive and accurate for resolving the vacuum/gas boundary which always exists in pulsed fusion systems. Argon plasma was used to compare the two systems to determine which offers better performance. The plasma was also subjected to a wide variety of shapes and initial conditions to determine what would offer higher performance for the two systems.

  8. Vortical flow in human elbow joints: a three-dimensional computed tomography modeling study.

    PubMed

    Adikrishna, Arnold; Kekatpure, Aashay L; Tan, Jun; Lee, Hyun-Joo; Deslivia, Maria Florencia; Jeon, In-Ho

    2014-10-01

    The human elbow joint has been regarded as a loose hinge joint, with a unique helical motion of the axis during extension-flexion. This study was designed to identify the helical axis in the ulnohumeral joint during elbow extension-flexion by tracking the midpoint between the coronoid tip and the olecranon tip of the proximal ulna in a three-dimensional (3D) computed tomography (CT) image model. The elbows of four volunteers were CT-scanned at four flexion angles (0°, 45°, 90°, and 130°) at neutral rotation with a custom-made holding device to control any motion during scanning. Three-dimensional models of each elbow were reconstructed and a 3D ulnohumeral joint at 45°, 90°, and 130° was superimposed onto a fully extended joint (0°) by rotating and translating each 3D ulnohumeral joint along the axes. The midpoints of the olecranon and coronoid tips were interpolated using cubic spline technique and the dynamic elbow motion was plotted to determine the motion of the helical axis. The means and standard deviations were subsequently calculated. The average midpoint pattern of joint motion from extension to flexion was elliptical-orbit-like when projected onto a sagittal plane and continuously translated a mean 2.14 ± 0.34 mm (range, 1.83-2.52 mm) to the lateral side during elbow extension-flexion. In 3D space, the average midpoint pattern of the ulnohumeral joint resembles a vortical flow, spinning along an imaginary axis, with an inconsistent radius from 0° to 130° flexion. The ulnohumeral joint axis both rotates and translates during elbow extension-flexion, with a vortex-flow motion occurring during flexion in 3D model analysis. This motion should be considered when performing hinged external fixation, total elbow replacement and medial collateral ligament reconstruction surgery.

  9. Long-term three-dimensional stability of mandibular advancement surgery

    PubMed Central

    Franco, Alexandre A.; Cevidanes, Lucia Helena S.; Phillips, Ceib; Rossouw, Paul Emile; Turvey, Timothy A.; Carvalho, Felipe de Assis R.; de Paula, Leonardo K.; Quintão, Cátia Cardoso A.; Almeida, Marco Antonio O.

    2013-01-01

    PURPOSE To evaluate the three-dimensional changes in the position of the condyles, rami, and chin from 1 to 3 years after mandibular advancement surgery. METHOD This prospective observational study used pre and postoperative CBCT scans of 27 subjects with skeletal Class II jaw relationship and normal or deep overbite. An automatic technique of cranial base superimposition was used to assess positional and/or bone remodeling changes that were visually displayed and quantified using 3D color maps. An analysis of covariance with presence of genioplasty, age at the time of surgery, and sex as explanatory variables was used to estimate and test the adjusted mean changes for each region of interest. RESULTS The chin rotated downward and backwards between the 1 and 3 years post-surgery. Changes ≥ 2mm were observed in 17% of the cases. The mandibular condyles presented displacements and/or bone remodeling ≥ 2mm on the anterior surface (21% of the cases on the left and 13% on the right side), superior surfaces (8% on both sides) and lateral poles (17% on the left and 4% on the right side). The posterior borders of the rami exhibited symmetric lateral or rotational displacements in 4% of the cases. CONCLUSION In the hierarchy of surgical stability, mandibular advancement surgery is considered one of the most stable surgical procedures However, between 1 and 3 years post-surgery approximately 20% of the patients had 2-4 mm changes in the horizontal and vertical chin position, and/or changes in condylar position and adaptive bone remodeling. PMID:23769460

  10. Constructing three-dimensional detachable and composable computer models of the head and neck.

    PubMed

    Fan, Min; Dai, Peishan; Zheng, Buhong; Li, Xinchun

    2015-06-01

    The head and neck region has a complex spatial and topological structure, three-dimensional (3D) computer model of the region can be used in anatomical education, radiotherapy planning and surgical training. However, most of the current models only consist of a few parts of the head and neck, and the 3D models are not detachable and composable. In this study, a high-resolution 3D detachable and composable model of the head and neck was constructed based on computed tomography (CT) serial images. First, fine CT serial images of the head and neck were obtained. Then, a color lookup table was created for 58 structures, which was used to create anatomical atlases of the head and neck. Then, surface and volume rendering methods were used to reconstruct 3D models of the head and neck. Smoothing and polygon reduction steps were added to improve 3D rendering effects. 3D computer models of the head and neck, including the sinus, pharynx, vasculature, nervous system, endocrine system and glands, muscles, bones and skin, were reconstructed. The models consisted of 58 anatomical detachable and composable structures and each structure can be displayed individually or together with other structures.

  11. Improved depth perception with three-dimensional auxiliary display and computer generated three-dimensional panoramic overviews in robot-assisted laparoscopy.

    PubMed

    Wieringa, Fokko P; Bouma, Henri; Eendebak, Pieter T; van Basten, Jean-Paul A; Beerlage, Harrie P; Smits, Geert A H J; Bos, Jelte E

    2014-04-01

    In comparison to open surgery, endoscopic surgery offers impaired depth perception and narrower field-of-view. To improve depth perception, the Da Vinci robot offers three-dimensional (3-D) video on the console for the surgeon but not for assistants, although both must collaborate. We improved the shared perception of the whole surgical team by connecting live 3-D monitors to all three available Da Vinci generations, probed user experience after two years by questionnaire, and compared time measurements of a predefined complex interaction task performed with a 3-D monitor versus two-dimensional. Additionally, we investigated whether the complex mental task of reconstructing a 3-D overview from an endoscopic video can be performed by a computer and shared among users. During the study, 925 robot-assisted laparoscopic procedures were performed in three hospitals, including prostatectomies, cystectomies, and nephrectomies. Thirty-one users participated in our questionnaire. Eighty-four percent preferred 3-D monitors and 100% reported spatial-perception improvement. All participating urologists indicated quicker performance of tasks requiring delicate collaboration (e.g., clip placement) when assistants used 3-D monitors. Eighteen users participated in a timing experiment during a delicate cooperation task in vitro. Teamwork was significantly (40%) faster with the 3-D monitor. Computer-generated 3-D reconstructions from recordings offered very wide interactive panoramas with educational value, although the present embodiment is vulnerable to movement artifacts.

  12. Computer-assisted three-dimensional surgical planing and simulation. 3D soft tissue planning and prediction.

    PubMed

    Xia, J; Samman, N; Yeung, R W; Wang, D; Shen, S G; Ip, H H; Tideman, H

    2000-08-01

    The purpose of this paper is to report a new technique for three-dimensional facial soft-tissue-change prediction after simulated orthognathic surgical planning. A scheme for soft tissue deformation, "Computer-assisted three-dimensional virtual reality soft tissue planning and prediction for orthognathic surgery (CASP)", is presented. The surgical planning was based on three-dimensional reconstructed CT visualization. Soft tissue changes were predicted by two newly devised algorithms: Surface Normal-based Model Deformation Algorithm and Ray Projection-based Model Deformation Algorithm. A three-dimensional color facial texture-mapping technique was also used for generating the color photo-realistic facial model. As a final result, a predicted and simulated patient's color facial model can be visualized from arbitrary viewing points.

  13. Computational Study of Effects of Tension Imbalance on Phonation in a Three Dimensional Tubular Larynx Model

    PubMed Central

    Xue, Qian; Zheng, Xudong; Mittal, Rajat; Bielamowicz, Steve

    2014-01-01

    Summary Objective The current study explores the use of a continuum based computational model to investigate the effect of left right tension imbalance on vocal fold vibrations and glottal aerodynamics, as well as its implication on phonation. The study allows us to gain new insights into the underlying physical mechanism of irregularities induced by vocal fold tension imbalance associated with unilateral cricothyroid muscle paralysis. Method A three dimensional simulation of glottal flow and vocal fold dynamics in a tubular laryngeal model with tension imbalance was conducted by using a coupled flow-structure interaction computational model. Tension imbalance was modeled by reducing by 20% the Young’s modulus of one of the vocal folds, while holding vocal fold length constant. Effects of tension imbalance on vibratory characteristic of the vocal folds and on the time-varying properties of glottal airflow as well as the aerodynamic energy transfer are comprehensively analyzed. Results and Conclusions The analysis demonstrates that the continuum based biomechanical model can provide a good description of phonatory dynamics in tension imbalance conditions. It is found that while 20% tension imbalance does not have noticeable effects on the fundamental frequency, it does lead to a larger glottal flow leakage and asymmetric vibrations of the two vocal folds. A detailed analysis of the energy transfer suggests that the majority of the energy is consumed by the lateral motion of the vocal folds and the net energy transferred to the softer fold is less than the one transferred to the normal fold. PMID:24725589

  14. Three-dimensional computed tomography cephalometric craniofacial analysis: experimental validation in vitro.

    PubMed

    Olszewski, R; Zech, F; Cosnard, G; Nicolas, V; Macq, B; Reychler, H

    2007-09-01

    The development of three-dimensional (3D) cephalometric analysis is essential for the computer-assisted planning of orthognathic surgery. The aim of this study was to transform and adapt Delaire's two-dimensional cephalometric analysis into the third dimension; this transposition was then validated. The comparative advantage of using 3D computed tomography (CT) surface renderings over profile X-rays was analysed. Comparison was made of inter- and intra-observer reproducibility of the cephalometric measurements done on profile X-rays and on 3D CT surface renderings on the same 26 dry skulls. The accuracy was also tested of the measurements done on 3D CT surface renderings (ACRO 3D) in relation to those directly taken on dry skulls with the help of a 3D measuring instrument. Inter- and intra-observer reproducibility proved significantly superior (p<0.0001) following the 3D CT method. There were no significant differences in the accuracy of measurements between the ACRO 3D software and the 3D measuring instrument. The ACRO 3D software was confirmed as being a reliable tool for developing 3D CT cephalometric analyses. Further research may entail clinical validation of the 3D CT craniofacial cephalometric method of analysis.

  15. Synchrotron X-ray computed laminography of the three-dimensional anatomy of tomato leaves.

    PubMed

    Verboven, Pieter; Herremans, Els; Helfen, Lukas; Ho, Quang T; Abera, Metadel; Baumbach, Tilo; Wevers, Martine; Nicolaï, Bart M

    2015-01-01

    Synchrotron radiation computed laminography (SR-CL) is presented as an imaging method for analyzing the three-dimensional (3D) anatomy of leaves. The SR-CL method was used to provide 3D images of 1-mm² samples of intact leaves at a pixel resolution of 750 nm. The method allowed visualization and quantitative analysis of palisade and spongy mesophyll cells, and showed local venation patterns, aspects of xylem vascular structure and stomata. The method failed to image subcellular organelles such as chloroplasts. We constructed 3D computer models of leaves that can provide a basis for calculating gas exchange, light penetration and water and solute transport. The leaf anatomy of two different tomato genotypes grown in saturating light conditions was compared by 3D analysis. Differences were found in calculated values of tissue porosity, cell number density, cell area to volume ratio and cell volume and cell shape distributions of palisade and spongy cell layers. In contrast, the exposed cell area to leaf area ratio in mesophyll, a descriptor that correlates to the maximum rate of photosynthesis in saturated light conditions, was no different between spongy and palisade cells or between genotypes. The use of 3D image processing avoids many of the limitations of anatomical analysis with two-dimensional sections.

  16. Virtual cerebral ventricular system: an MR-based three-dimensional computer model.

    PubMed

    Adams, Christina M; Wilson, Timothy D

    2011-01-01

    The inherent spatial complexity of the human cerebral ventricular system, coupled with its deep position within the brain, poses a problem for conceptualizing its anatomy. Cadaveric dissection, while considered the gold standard of anatomical learning, may be inadequate for learning the anatomy of the cerebral ventricular system; even with intricate dissection, ventricular structures remain difficult to observe. Three-dimensional (3D) computer reconstruction of the ventricular system offers a solution to this problem. This study aims to create an accurate 3D computer reconstruction of the ventricular system with surrounding structures, including the brain and cerebellum, using commercially available 3D rendering software. Magnetic resonance imaging (MRI) scans of a male cadaver were segmented using both semiautomatic and manual tools. Segmentation involves separating voxels of different grayscale values to highlight specific neural structures. User controls enable adding or removing of structures, altering their opacity, and making cross-sectional slices through the model to highlight inner structures. Complex physiologic concepts, such as the flow of cerebrospinal fluid, are also shown using the 3D model of the ventricular system through a video animation. The model can be projected stereoscopically, to increase depth perception and to emphasize spatial relationships between anatomical structures. This model is suited for both self-directed learning and classroom teaching of the 3D anatomical structure and spatial orientation of the ventricles, their connections, and their relation to adjacent neural and skeletal structures. PMID:21976457

  17. Effects of using two- versus three-dimensional computational modeling of fluidized beds Part I, hydrodynamics

    SciTech Connect

    Xie, Nan; Battaglia, Francine; Pannala, Sreekanth

    2008-01-01

    Simulations of fluidized beds are performed to study and determine the effect on the use of coordinate systems and geometrical configurations to model fluidized bed reactors. Computational fluid dynamics is employed for an Eulerian-Eulerian model, which represents each phase as an interspersed continuum. The transport equation for granular temperature is solved and a hyperbolic tangent function is used to provide a smooth transition between the plastic and viscous regimes for the solid phase. The aim of the present work is to show the range of validity for employing simulations based on a 2D Cartesian coordinate system to approximate both cylindrical and rectangular fluidized beds. Three different fluidization regimes, bubbling, slugging and turbulent regimes, are investigated and the results of 2D and 3D simulations are presented for both cylindrical and rectangular domains. The results demonstrate that a 2D Cartesian system can be used to successfully simulate and predict a bubbling regime. However, caution must be exercised when using 2D Cartesian coordinates for other fluidized regimes. A budget analysis that explains all the differences in detail is presented in Part II [N. Xie, F. Battaglia, S. Pannala, Effects of Using Two-Versus Three-Dimensional Computational Modeling of Fluidized Beds: Part II, budget analysis, 182 (1) (2007) 14] to complement the hydrodynamic theory of this paper.

  18. Three-Dimensional Computational Fluid Dynamics Modeling of Solid Oxide Electrolysis Cells and Stacks

    SciTech Connect

    Grant Hawkes; James O'Brien; Carl Stoots; Stephen Herring

    2008-07-01

    A three-dimensional computational fluid dynamics (CFD) electrochemical model has been created for detailed analysis of a high-temperature electrolysis stack (solid oxide fuel cells operated as electrolyzers). Inlet and outlet plenum flow distributions are discussed. Maldistribution of plena flow show deviations in per-cell operating conditions due to non-uniformity of species concentrations. Models have also been created to simulate experimental conditions and for code validation. Comparisons between model predictions and experimental results are discussed. Mass, momentum, energy, and species conservation and transport are provided via the core features of the commercial CFD code FLUENT. A solid-oxide fuel cell (SOFC) model adds the electrochemical reactions and loss mechanisms and computation of the electric field throughout the cell. The FLUENT SOFC user-defined subroutine was modified for this work to allow for operation in the electrolysis mode. Model results provide detailed profiles of temperature, Nernst potential, operating potential, activation over-potential, anode-side gas composition, cathode-side gas composition, current density and hydrogen production over a range of stack operating conditions. Variations in flow distribution, and species concentration are discussed. End effects of flow and per-cell voltage are also considered. Predicted mean outlet hydrogen and steam concentrations vary linearly with current density, as expected. Contour plots of local electrolyte temperature, current density, and Nernst potential indicate the effects of heat transfer, reaction cooling/heating, and change in local gas composition.

  19. Computation of three-dimensional nozzle-exhaust flow fields with the GIM code

    NASA Technical Reports Server (NTRS)

    Spradley, L. W.; Anderson, P. G.

    1978-01-01

    A methodology is introduced for constructing numerical analogs of the partial differential equations of continuum mechanics. A general formulation is provided which permits classical finite element and many of the finite difference methods to be derived directly. The approach, termed the General Interpolants Method (GIM), can combined the best features of finite element and finite difference methods. A quasi-variational procedure is used to formulate the element equations, to introduce boundary conditions into the method and to provide a natural assembly sequence. A derivation is given in terms of general interpolation functions from this procedure. Example computations for transonic and supersonic flows in two and three dimensions are given to illustrate the utility of GIM. A three-dimensional nozzle-exhaust flow field is solved including interaction with the freestream and a coupled treatment of the shear layer. Potential applications of the GIM code to a variety of computational fluid dynamics problems is then discussed in terms of existing capability or by extension of the methodology.

  20. Three dimensional morphological studies of Larger Benthic Foraminifera at the population level using micro computed tomography

    NASA Astrophysics Data System (ADS)

    Kinoshita, Shunichi; Eder, Wolfgang; Woeger, Julia; Hohenegger, Johann; Briguglio, Antonino; Ferrandez-Canadell, Carles

    2015-04-01

    Symbiont-bearing larger benthic Foraminifera (LBF) are long-living marine (at least 1 year), single-celled organisms with complex calcium carbonate shells. Their morphology has been intensively studied since the middle of the nineteenth century. This led to a broad spectrum of taxonomic results, important from biostratigraphy to ecology in shallow water tropical to warm temperate marine palaeo-environments. However, it was necessary for the traditional investigation methods to cut or destruct specimens for analysing the taxonomically important inner structures. X-ray micro-computed tomography (microCT) is one of the newest techniques used in morphological studies. The greatest advantage is the non-destructive acquisition of inner structures. Furthermore, the running improve of microCT scanners' hard- and software provides high resolution and short time scans well-suited for LBF. Three-dimensional imaging techniques allow to select and extract each chamber and to measure easily its volume, surface and several form parameters used for morphometric analyses. Thus, 3-dimensional visualisation of LBF-tests is a very big step forward from traditional morphology based on 2-dimensional data. The quantification of chamber form is a great opportunity to tackle LBF structures, architectures and the bauplan geometry. The micrometric digital resolution is the only way to solve many controversies in phylogeny and evolutionary trends of LBF. For the present study we used micro-computed tomography to easily investigate the chamber number of every specimen from statistically representative part of populations to estimate population dynamics. Samples of living individuals are collected at monthly intervals from fixed locations. Specific preparation allows to scan up to 35 specimens per scan within 2 hours and to obtain the complete digital dataset for each specimen of the population. MicroCT enables thus a fast and precise count of all chambers built by the foraminifer from its

  1. Computational Aerodynamic Analysis of Three-Dimensional Ice Shapes on a NACA 23012 Airfoil

    NASA Technical Reports Server (NTRS)

    Jun, Garam; Oliden, Daniel; Potapczuk, Mark G.; Tsao, Jen-Ching

    2014-01-01

    The present study identifies a process for performing computational fluid dynamic calculations of the flow over full three-dimensional (3D) representations of complex ice shapes deposited on aircraft surfaces. Rime and glaze icing geometries formed on a NACA23012 airfoil were obtained during testing in the NASA Glenn Research Center's Icing Research Tunnel (IRT). The ice shape geometries were scanned as a cloud of data points using a 3D laser scanner. The data point clouds were meshed using Geomagic software to create highly accurate models of the ice surface. The surface data was imported into Pointwise grid generation software to create the CFD surface and volume grids. It was determined that generating grids in Pointwise for complex 3D icing geometries was possible using various techniques that depended on the ice shape. Computations of the flow fields over these ice shapes were performed using the NASA National Combustion Code (NCC). Results for a rime ice shape for angle of attack conditions ranging from 0 to 10 degrees and for freestream Mach numbers of 0.10 and 0.18 are presented. For validation of the computational results, comparisons were made to test results from rapid-prototype models of the selected ice accretion shapes, obtained from a separate study in a subsonic wind tunnel at the University of Illinois at Urbana-Champaign. The computational and experimental results were compared for values of pressure coefficient and lift. Initial results show fairly good agreement for rime ice accretion simulations across the range of conditions examined. The glaze ice results are promising but require some further examination.

  2. Computational Aerodynamic Analysis of Three-Dimensional Ice Shapes on a NACA 23012 Airfoil

    NASA Technical Reports Server (NTRS)

    Jun, GaRam; Oliden, Daniel; Potapczuk, Mark G.; Tsao, Jen-Ching

    2014-01-01

    The present study identifies a process for performing computational fluid dynamic calculations of the flow over full three-dimensional (3D) representations of complex ice shapes deposited on aircraft surfaces. Rime and glaze icing geometries formed on a NACA23012 airfoil were obtained during testing in the NASA Glenn Research Centers Icing Research Tunnel (IRT). The ice shape geometries were scanned as a cloud of data points using a 3D laser scanner. The data point clouds were meshed using Geomagic software to create highly accurate models of the ice surface. The surface data was imported into Pointwise grid generation software to create the CFD surface and volume grids. It was determined that generating grids in Pointwise for complex 3D icing geometries was possible using various techniques that depended on the ice shape. Computations of the flow fields over these ice shapes were performed using the NASA National Combustion Code (NCC). Results for a rime ice shape for angle of attack conditions ranging from 0 to 10 degrees and for freestream Mach numbers of 0.10 and 0.18 are presented. For validation of the computational results, comparisons were made to test results from rapid-prototype models of the selected ice accretion shapes, obtained from a separate study in a subsonic wind tunnel at the University of Illinois at Urbana-Champaign. The computational and experimental results were compared for values of pressure coefficient and lift. Initial results show fairly good agreement for rime ice accretion simulations across the range of conditions examined. The glaze ice results are promising but require some further examination.

  3. Locally Advanced Prostate Cancer: Three-Dimensional Magnetic Resonance Spectroscopy to Monitor Prostate Response to Therapy

    SciTech Connect

    Valentini, Anna Lia; Gui, Benedetta; D'Agostino, Giuseppe Roberto; Mattiucci, Giancarlo; Clementi, Valeria; Di Molfetta, Ippolita Valentina; Bonomo, Pierluigi; Mantini, Giovanna

    2012-11-01

    Purpose: To correlate results of three-dimensional magnetic resonance spectroscopic imaging (MRSI) with prostate-specific antigen (PSA) levels and time since external beam irradiation (EBRT) in patients treated with long-term hormone therapy (HT) and EBRT for locally advanced disease to verify successful treatment by documenting the achievement of metabolic atrophy (MA). Methods and Materials: Between 2006 and 2008, 109 patients were consecutively enrolled. MA was assessed by choline and citrate peak area-to-noise-ratio <5:1. Cancerous metabolism (CM) was defined by choline-to-creatine ratio >1.5:1 or choline signal-to-noise-ratio >5:1. To test the strength of association between MRSI results and the time elapsed since EBRT (TEFRT), PSA levels, Gleason score (GS), and stage, logistic regression (LR) was performed. p value <0.05 was statistically significant. The patients' outcomes were verified in 2011. Results: MRSI documented MA in 84 of 109 and CM in 25 of 109 cases. LR showed that age, GS, stage, and initial and recent PSA had no significant impact on MRSI results which were significantly related to PSA values at the time of MRSI and to TEFRT. Patients were divided into three groups according to TEFRT: <1 year, 1-2 years, and >2 years. MA was detected in 54.1% of patients of group 1, 88.9% of group 2, and in 94.5% of group 3 (100% when PSA nadir was reached). CM was detected in 50% of patients with reached PSA nadir in group 1. Local relapse was found in 3 patients previously showing CM at long TEFRT. Conclusion: MA detection, indicative of successful treatment because growth of normal or abnormal cells cannot occur without metabolism, increases with decreasing PSA levels and increasing time on HT after EBRT. This supports long-term HT in advanced prostate cancer. Larger study series are needed to assess whether MRSI could predict local relapse by detecting CM at long TEFRT.

  4. A computational model to generate simulated three-dimensional breast masses

    PubMed Central

    de Sisternes, Luis; Brankov, Jovan G.; Zysk, Adam M.; Schmidt, Robert A.; Nishikawa, Robert M.; Wernick, Miles N.

    2015-01-01

    Purpose: To develop algorithms for creating realistic three-dimensional (3D) simulated breast masses and embedding them within actual clinical mammograms. The proposed techniques yield high-resolution simulated breast masses having randomized shapes, with user-defined mass type, size, location, and shape characteristics. Methods: The authors describe a method of producing 3D digital simulations of breast masses and a technique for embedding these simulated masses within actual digitized mammograms. Simulated 3D breast masses were generated by using a modified stochastic Gaussian random sphere model to generate a central tumor mass, and an iterative fractal branching algorithm to add complex spicule structures. The simulated masses were embedded within actual digitized mammograms. The authors evaluated the realism of the resulting hybrid phantoms by generating corresponding left- and right-breast image pairs, consisting of one breast image containing a real mass, and the opposite breast image of the same patient containing a similar simulated mass. The authors then used computer-aided diagnosis (CAD) methods and expert radiologist readers to determine whether significant differences can be observed between the real and hybrid images. Results: The authors found no statistically significant difference between the CAD features obtained from the real and simulated images of masses with either spiculated or nonspiculated margins. Likewise, the authors found that expert human readers performed very poorly in discriminating their hybrid images from real mammograms. Conclusions: The authors’ proposed method permits the realistic simulation of 3D breast masses having user-defined characteristics, enabling the creation of a large set of hybrid breast images containing a well-characterized mass, embedded within real breast background. The computational nature of the model makes it suitable for detectability studies, evaluation of computer aided diagnosis algorithms, and

  5. A computational model to generate simulated three-dimensional breast masses

    SciTech Connect

    Sisternes, Luis de; Brankov, Jovan G.; Zysk, Adam M.; Wernick, Miles N.; Schmidt, Robert A.; Nishikawa, Robert M.

    2015-02-15

    Purpose: To develop algorithms for creating realistic three-dimensional (3D) simulated breast masses and embedding them within actual clinical mammograms. The proposed techniques yield high-resolution simulated breast masses having randomized shapes, with user-defined mass type, size, location, and shape characteristics. Methods: The authors describe a method of producing 3D digital simulations of breast masses and a technique for embedding these simulated masses within actual digitized mammograms. Simulated 3D breast masses were generated by using a modified stochastic Gaussian random sphere model to generate a central tumor mass, and an iterative fractal branching algorithm to add complex spicule structures. The simulated masses were embedded within actual digitized mammograms. The authors evaluated the realism of the resulting hybrid phantoms by generating corresponding left- and right-breast image pairs, consisting of one breast image containing a real mass, and the opposite breast image of the same patient containing a similar simulated mass. The authors then used computer-aided diagnosis (CAD) methods and expert radiologist readers to determine whether significant differences can be observed between the real and hybrid images. Results: The authors found no statistically significant difference between the CAD features obtained from the real and simulated images of masses with either spiculated or nonspiculated margins. Likewise, the authors found that expert human readers performed very poorly in discriminating their hybrid images from real mammograms. Conclusions: The authors’ proposed method permits the realistic simulation of 3D breast masses having user-defined characteristics, enabling the creation of a large set of hybrid breast images containing a well-characterized mass, embedded within real breast background. The computational nature of the model makes it suitable for detectability studies, evaluation of computer aided diagnosis algorithms, and

  6. Comparison of Experimental Data and Computations Fluid Dynamics Analysis for a Three Dimensional Linear Plug Nozzle

    NASA Technical Reports Server (NTRS)

    Ruf, J. H.; Hagemann, G.; Immich, H.

    2003-01-01

    A three dimensional linear plug nozzle of area ratio 12.79 was designed by Astrium. The nozzle was tested within the German National Technology Program LION in a cold air wind tunnel by TU Dresden. The experimental hardware and test conditions are described. Experimental data was obtained for the nozzle without plug side wall fences and then with plug side wall fences. Experimental data for two nozzle pressure ratios (NPR), 116 and 45, are presented for the without fence and with fence configurations. Schlieren images of both NPR were recorded. Axial profiles of plug wall static pressures were measured at several spanwise locations and on the plug base. Detailed computational fluid dynamics (CFD) analysis was performed for these nozzle configurations by NASA MSFC. The CFD exhibits good agreement with the experimental data. A detailed comparison of the CFD results and the experimental plug wall pressure data is given for four test conditions; at both NPRs, without and with plug side wall fences. Numerical schlieren images are compared to experimental schlieren images. Nozzle thrust efficiencies are calculated from the CFD results. The CFD results are used to illustrate the plug nozzle fluid dynamics for all four test conditions. The effect of the plug side wall fences at both NPRs is emphasized.

  7. Cellular Nutrition in Complex Three-Dimensional Scaffolds: A Comparison between Experiments and Computer Simulations

    PubMed Central

    Bergemann, Claudia; Elter, Patrick; Lange, Regina; Weißmann, Volker; Hansmann, Harald; Klinkenberg, Ernst-Dieter; Nebe, Barbara

    2015-01-01

    Studies on bone cell ingrowth into synthetic, porous three-dimensional (3D) implants showed difficulties arising from impaired cellular proliferation and differentiation in the core region of these scaffolds with increasing scaffold volume in vitro. Therefore, we developed an in vitro perfusion cell culture module, which allows the analysis of cells in the interior of scaffolds under different medium flow rates. For each flow rate the cell viability was measured and compared with results from computer simulations that predict the local oxygen supply and shear stress inside the scaffold based on the finite element method. We found that the local cell viability correlates with the local oxygen concentration and the local shear stress. On the one hand the oxygen supply of the cells in the core becomes optimal with a higher perfusion flow. On the other hand shear stress caused by high flow rates impedes cell vitality, especially at the surface of the scaffold. Our results demonstrate that both parameters must be considered to derive an optimal nutrient flow rate. PMID:26539216

  8. Three-dimensional computational fluid dynamics simulations of particle deposition in the tracheobronchial tree.

    PubMed

    Isaacs, Kristin K; Schlesinger, R B; Martonen, Ted B

    2006-01-01

    Simulation of the dynamics and disposition of inhaled particles within human lungs is an invaluable tool in both the development of inhaled pharmacologic drugs and the risk assessment of environmental particulate matter (PM). The goal of the present focused study was to assess the utility of three-dimensional computational fluid dynamics (CFD) models in studying the local deposition patterns of PM in respiratory airways. CFD models were validated using data from published experimental studies in human lung casts. The ability of CFD to appropriately simulate trends in deposition patterns due to changing ventilatory conditions was specifically addressed. CFD simulations of airflow and particle motion were performed in a model of the trachea and main bronchi using Fluent Inc.'s FIDAP CFD software. Particle diameters of 8 microm were considered for input flow rates of 15 and 60 L/min. CFD was able to reproduce the observed spatial heterogeneities of deposition within the modeled bifurcations, and correctly predicted the "hot-spots" of particle deposition on carinal ridges. The CFD methods also predicted observed differences in deposition for high-versus-low flow rates. CFD models may provide an efficient means of studying the complex effects of airway geometry, particle characteristics, and ventilatory parameters on particle deposition and therefore aid in the design of human subject experiments.

  9. The role of three-dimensional computed tomography in the evaluation of temporomandibular joint ankylosis

    PubMed Central

    Kavin, Thangavelu; John, Reena; Venkataraman, Siva Subramaniyam

    2012-01-01

    Aims: The aim of the study was to evaluate the role of three-dimensional computed tomography (3D-CT) in the assessment of temporomandibular joint (TMJ) ankylosis and its importance in treatment planning. The objectives of study were to measure and assess the mediolateral extent of ankylosis mass in 3D-CT and to compare the extent with intraoperative assessment. The study was also aimed to measure the coronoid process elongation in 3D-CT and its significance in treatment planning. Materials and Methods: This prospective study included 3D-CT evaluation of 11 patients with TMJ ankylosis during the period of February 2006–October 2007. Results: The 3D-CT assessment provided the length of the coronoid process and the relation of vital structures including maxillary artery to the ankylosed mass. Measurement of ankylosed mass also aids in preoperative measurement of the graft required to reconstruct the defect following removal of the ankylosed mass. Conclusion: Our study concludes that 3D-CT is a useful tool in the diagnosis and treatment planning of TMJ ankylosis. PMID:23066255

  10. Fast three-dimensional superimposition of cone beam computed tomography for orthopaedics and orthognathic surgery evaluation

    PubMed Central

    Weissheimer, A.; Menezes, L. M.; Koerich, L.; Pham, J.; Cevidanes, L. H. S.

    2015-01-01

    The aim of this study was to validate a method for fast three-dimensional (3D) superimposition of cone beam computed tomography (CBCT) in growing patients and adults (surgical cases). The sample consisted of CBCT scans of 18 patients. For 10 patients, as the gold standard, the spatial position of the pretreatment CBCT was reoriented, saved as a reoriented volume, and then superimposed on the original image. For eight patients, four non-growing and four growing, the pre- and post-treatment scans were superimposed. Fast voxel-based superimposition was performed, with registration at the anterior cranial base. This superimposition process took 10–15 s. The fit of the cranial base superimposition was verified by qualitative visualization of the semi-transparent axial, sagittal, and coronal cross-sectional slices of all corresponding anatomical structures. Virtual 3D surface models of the skull were generated via threshold segmentation, and superimposition errors in the reoriented models and the results of treatment for the treated cases were evaluated by 3D surface distances on colour-coded maps. The superimposition error of the spatial reorientation and for growing and non-growing patients was <0.5 mm, which is acceptable and clinically insignificant. The voxel-based superimposition method evaluated was reproducible in different clinical conditions, rapid, and applicable for research and clinical practice. PMID:25935632

  11. Alveolar duct expansion greatly enhances aerosol deposition: a three-dimensional computational fluid dynamics study

    PubMed Central

    Darquenne, C.; Harrington, L.; Prisk, G.K.

    2009-01-01

    Obtaining in vivo data of particle transport in the human lung is often difficult, if not impossible. Computational fluid dynamics (CFD) can provide detailed information on aerosol transport in realistic airway geometries. This paper provides a review of the key CFD studies of aerosol transport in the acinar region of the human lung. It also describes the first ever three-dimensional model of a single fully alveolated duct with moving boundaries allowing for the cyclic expansion and contraction that occurs during breathing. Studies of intra-acinar aerosol transport performed in models with stationary walls (SWs) showed that flow patterns were influenced by the geometric characteristics of the alveolar aperture, the presence of the alveolar septa contributed to the penetration of the particles into the lung periphery and there were large inhomogeneities in deposition patterns within the acinar structure. Recent studies have now used acinar models with moving walls. In these cases, particles penetrate the alveolar cavities not only as a result of sedimentation and diffusion but also as a result of convective transport, resulting in a much higher deposition prediction than that in SW models. Thus, models that fail to incorporate alveolar wall motions probably underestimate aerosol deposition in the acinar region of the lung. PMID:19414458

  12. Building a three-dimensional model of the upper gastrointestinal tract for computer simulations of swallowing.

    PubMed

    Gastelum, Alfonso; Mata, Lucely; Brito-de-la-Fuente, Edmundo; Delmas, Patrice; Vicente, William; Salinas-Vázquez, Martín; Ascanio, Gabriel; Marquez, Jorge

    2016-03-01

    We aimed to provide realistic three-dimensional (3D) models to be used in numerical simulations of peristaltic flow in patients exhibiting difficulty in swallowing, also known as dysphagia. To this end, a 3D model of the upper gastrointestinal tract was built from the color cryosection images of the Visible Human Project dataset. Regional color heterogeneities were corrected by centering local histograms of the image difference between slices. A voxel-based model was generated by stacking contours from the color images. A triangle mesh was built, smoothed and simplified. Visualization tools were developed for browsing the model at different stages and for virtual endoscopy navigation. As result, a computer model of the esophagus and the stomach was obtained, mainly for modeling swallowing disorders. A central-axis curve was also obtained for virtual navigation and to replicate conditions relevant to swallowing disorders modeling. We show renderings of the model and discuss its use for simulating swallowing as a function of bolus rheological properties. The information obtained from simulation studies with our model could be useful for physicians in selecting the correct nutritional emulsions for patients with dysphagia.

  13. Three-dimensional time-dependent computer modeling of the electrothermal atomizers for analytical spectrometry

    NASA Astrophysics Data System (ADS)

    Tsivilskiy, I. V.; Nagulin, K. Yu.; Gilmutdinov, A. Kh.

    2016-02-01

    A full three-dimensional nonstationary numerical model of graphite electrothermal atomizers of various types is developed. The model is based on solution of a heat equation within solid walls of the atomizer with a radiative heat transfer and numerical solution of a full set of Navier-Stokes equations with an energy equation for a gas. Governing equations for the behavior of a discrete phase, i.e., atomic particles suspended in a gas (including gas-phase processes of evaporation and condensation), are derived from the formal equations molecular kinetics by numerical solution of the Hertz-Langmuir equation. The following atomizers test the model: a Varian standard heated electrothermal vaporizer (ETV), a Perkin Elmer standard THGA transversely heated graphite tube with integrated platform (THGA), and the original double-stage tube-helix atomizer (DSTHA). The experimental verification of computer calculations is carried out by a method of shadow spectral visualization of the spatial distributions of atomic and molecular vapors in an analytical space of an atomizer.

  14. Affective three-dimensional brain-computer interface created using a prism array-based display

    NASA Astrophysics Data System (ADS)

    Mun, Sungchul; Park, Min-Chul

    2014-12-01

    To avoid the vergence-accommodation mismatch and provide a strong sense of presence to users, we applied a prism array-based display when presenting three-dimensional (3-D) objects. Emotional pictures were used as visual stimuli to increase the signal-to-noise ratios of steady-state visually evoked potentials (SSVEPs) because involuntarily motivated selective attention by affective mechanisms can enhance SSVEP amplitudes, thus producing increased interaction efficiency. Ten male and nine female participants voluntarily participated in our experiments. Participants were asked to control objects under three viewing conditions: two-dimension (2-D), stereoscopic 3-D, and prism. The participants performed each condition in a counter-balanced order. One-way repeated measures analysis of variance showed significant increases in the positive predictive values in the prism condition compared to the 2-D and 3-D conditions. Participants' subjective ratings of realness and engagement were also significantly greater in the prism condition than in the 2-D and 3-D conditions, while the ratings for visual fatigue were significantly reduced in the prism condition than in the 3-D condition. The proposed methods are expected to enhance the sense of reality in 3-D space without causing critical visual fatigue. In addition, people who are especially susceptible to stereoscopic 3-D may be able to use the affective brain-computer interface.

  15. Bilateral and pseudobilateral tonsilloliths: Three dimensional imaging with cone-beam computed tomography

    PubMed Central

    Mısırlıoglu, Melda; Nalcaci, Rana; Yardımcı, Selmi

    2013-01-01

    Purpose Tonsilloliths are calcifications found in the crypts of the palatal tonsils and can be detected on routine panoramic examinations. This study was performed to highlight the benefits of cone-beam computed tomography (CBCT) in the diagnosis of tonsilloliths appearing bilaterally on panoramic radiographs. Materials and Methods The sample group consisted of 7 patients who had bilateral radiopaque lesions at the area of the ascending ramus on panoramic radiographs. CBCT images for every patient were obtained from both sides of the jaw to determine the exact locations of the lesions and to rule out other calcifications. The calcifications were evaluated on the CBCT images using Ez3D2009 software. Additionally, the obtained images in DICOM format were transferred to ITK SNAP 2.4.0 pc software for semiautomatic segmentation. Segmentation was performed using contrast differences between the soft tissues and calcifications on grayscale images, and the volume in mm3 of the segmented three dimensional models were obtained. Results CBCT scans revealed that what appeared on panoramic radiographs as bilateral images were in fact unilateral lesions in 2 cases. The total volume of the calcifications ranged from 7.92 to 302.5mm3. The patients with bilaterally multiple and large calcifications were found to be symptomatic. Conclusion The cases provided the evidence that tonsilloliths should be considered in the differential diagnosis of radiopaque masses involving the mandibular ramus, and they highlight the need for a CBCT scan to differentiate pseudo- or ghost images from true bilateral pathologies. PMID:24083209

  16. Three-Dimensional Computer-Aided Detection of Microcalcification Clusters in Digital Breast Tomosynthesis.

    PubMed

    Jeong, Ji-Wook; Chae, Seung-Hoon; Chae, Eun Young; Kim, Hak Hee; Choi, Young-Wook; Lee, Sooyeul

    2016-01-01

    We propose computer-aided detection (CADe) algorithm for microcalcification (MC) clusters in reconstructed digital breast tomosynthesis (DBT) images. The algorithm consists of prescreening, MC detection, clustering, and false-positive (FP) reduction steps. The DBT images containing the MC-like objects were enhanced by a multiscale Hessian-based three-dimensional (3D) objectness response function and a connected-component segmentation method was applied to extract the cluster seed objects as potential clustering centers of MCs. Secondly, a signal-to-noise ratio (SNR) enhanced image was also generated to detect the individual MC candidates and prescreen the MC-like objects. Each cluster seed candidate was prescreened by counting neighboring individual MC candidates nearby the cluster seed object according to several microcalcification clustering criteria. As a second step, we introduced bounding boxes for the accepted seed candidate, clustered all the overlapping cubes, and examined. After the FP reduction step, the average number of FPs per case was estimated to be 2.47 per DBT volume with a sensitivity of 83.3%. PMID:27274993

  17. Quantitative assessment of myocardial perfusion using dynamic three-dimensional x-ray computed angiography

    SciTech Connect

    Teslow, T.N.

    1985-01-01

    Using computed tomogram time series, myocardial perfusion was angiographically measured as distributions of x-ray circulatory indicators in three dimensions. By separating the dynamic function from the cardiac structure, these separate components were tested using region-of-interest (ROI) mensuration in simulation, phantom, and in vivo experiments. Statistical criteria were used to evaluate the dynamic component which was represented by analytic mathematical models of indicator dilution. The spatial component was represented by three-dimensional (3-D) and two-dimensional (2-D) geometric models of the heart. Each of these components were determined in individual ROI's and globally integrated to manifest the perfusion heterogeneities. A physical heart phantom with controllable regional perfusion characteristics was also developed and studied. Experiments conducted on dogs compared the accuracy of 2-D and 3-D perfusion measurements by imaging to those using gamma-radioactive microspheres. Accurate reproducible localization of the heart was found to be important for obtaining accurate measures of regional perfusion in 3-D volume images exhibiting high noise.

  18. Three-dimensional radiation dose mapping with the TORT computer code

    SciTech Connect

    Slater, C.O.; Pace, J.V. III; Childs, R.L.; Haire, M.J. ); Koyama, T. )

    1991-01-01

    The Consolidated Fuel Reprocessing Program (CFRP) at Oak Ridge National Laboratory (ORNL) has performed radiation shielding studies in support of various facility designs for many years. Computer codes employing the point-kernel method have been used, and the accuracy of these codes is within acceptable limits. However, to further improve the accuracy and to calculate dose at a larger number of locations, a higher order method is desired, even for analyses performed in the early stages of facility design. Consequently, the three-dimensional discrete ordinates transport code TORT, developed at ORNL in the mid-1980s, was selected to examine in detail the dose received at equipment locations. The capabilities of the code have been previously reported. Recently, the Power Reactor and Nuclear Fuel Development Corporation in Japan and the US Department of Energy have used the TORT code as part of a collaborative agreement to jointly develop breeder reactor fuel reprocessing technology. In particular, CFRP used the TORT code to estimate radiation dose levels within the main process cell for a conceptual plant design and to establish process equipment lifetimes. The results reported in this paper are for a conceptual plant design that included the mechanical head and (i.e., the disassembly and shear machines), solvent extraction equipment, and miscellaneous process support equipment.

  19. Three-dimensional analysis of root canal geometry by high-resolution computed tomography.

    PubMed

    Peters, O A; Laib, A; Rüegsegger, P; Barbakow, F

    2000-06-01

    A detailed understanding of the complexity of root canal systems is imperative to ensure successful root canal preparation. The aim of this study was to evaluate the potential and accuracy of a three-dimensional, non-destructive technique for detailing root canal geometry by means of high-resolution tomography. The anatomy of root canals in 12 extracted human maxillary molars was analyzed by means of a micro-computed tomography scanner (microCT, cubic resolution 34 microm). A special mounting device facilitated repeated precise repositioning of the teeth in the microCT. Surface areas and volumes of each canal were calculated by triangulation, and means were determined. Model-independent methods were used to evaluate the canals' diameters and configuration. The calculated and measured volumes and the areas of artificial root canals, produced by the drilling of precision holes into dentin disks, were well-correlated. Semi-automated repositioning of specimens resulted in near-perfect matching (< 1 voxel) when outer canal contours were assessed. Root canal geometry was accurately assessed by this innovative technique; therefore, variables and indices presented may serve as a basis for further analyses of root canal anatomy in experimental endodontology. PMID:10890720

  20. Anthropometry of the Human Scaphoid Waist by Three-Dimensional Computed Tomography.

    PubMed

    Smith, Jennifer; Hofmeister, Eric P; Renninger, Christopher; Kroonen, Leo T

    2015-01-01

    Published measurements for the scaphoid are scarce. The purpose of this study is to define anthropometric norms for the waist of the scaphoid to assist in optimizing bone graft quantity and implant use. Computed tomography images of the wrist were reviewed by three surgeons. Anthropometric data were gathered, including the scaphoid waist diameter in two dimensions and the scaphoid waist volume. Each study was measured twice, allowing for determination of inter- and intraobserver reliability. Forty-three studies were examined (23 female and 20 male). Average measurements of the scaphoid waist were 11.28 ± 0.26 mm in the sagittal plane and 8.70 ± 0.17 mm in the coronal plane, and the waist volume was 715 ± 33.0 mm3. Specific measures of the narrowest portion of the scaphoid are provided by this study. Measurements of the scaphoid waist through the use of three-dimensional imaging are an accurate method with good inter- and intraobserver reliability. The measurements obtained from this study can be applied to guide graft and implant selection for treatment of scaphoid waist fractures and nonunions. PMID:26688990

  1. Cellular Nutrition in Complex Three-Dimensional Scaffolds: A Comparison between Experiments and Computer Simulations.

    PubMed

    Bergemann, Claudia; Elter, Patrick; Lange, Regina; Weißmann, Volker; Hansmann, Harald; Klinkenberg, Ernst-Dieter; Nebe, Barbara

    2015-01-01

    Studies on bone cell ingrowth into synthetic, porous three-dimensional (3D) implants showed difficulties arising from impaired cellular proliferation and differentiation in the core region of these scaffolds with increasing scaffold volume in vitro. Therefore, we developed an in vitro perfusion cell culture module, which allows the analysis of cells in the interior of scaffolds under different medium flow rates. For each flow rate the cell viability was measured and compared with results from computer simulations that predict the local oxygen supply and shear stress inside the scaffold based on the finite element method. We found that the local cell viability correlates with the local oxygen concentration and the local shear stress. On the one hand the oxygen supply of the cells in the core becomes optimal with a higher perfusion flow. On the other hand shear stress caused by high flow rates impedes cell vitality, especially at the surface of the scaffold. Our results demonstrate that both parameters must be considered to derive an optimal nutrient flow rate.

  2. Fast three-dimensional superimposition of cone beam computed tomography for orthopaedics and orthognathic surgery evaluation.

    PubMed

    Weissheimer, A; Menezes, L M; Koerich, L; Pham, J; Cevidanes, L H S

    2015-09-01

    The aim of this study was to validate a method for fast three-dimensional (3D) superimposition of cone beam computed tomography (CBCT) in growing patients and adults (surgical cases). The sample consisted of CBCT scans of 18 patients. For 10 patients, as the gold standard, the spatial position of the pretreatment CBCT was reoriented, saved as a reoriented volume, and then superimposed on the original image. For eight patients, four non-growing and four growing, the pre- and post-treatment scans were superimposed. Fast voxel-based superimposition was performed, with registration at the anterior cranial base. This superimposition process took 10-15s. The fit of the cranial base superimposition was verified by qualitative visualization of the semi-transparent axial, sagittal, and coronal cross-sectional slices of all corresponding anatomical structures. Virtual 3D surface models of the skull were generated via threshold segmentation, and superimposition errors in the reoriented models and the results of treatment for the treated cases were evaluated by 3D surface distances on colour-coded maps. The superimposition error of the spatial reorientation and for growing and non-growing patients was <0.5mm, which is acceptable and clinically insignificant. The voxel-based superimposition method evaluated was reproducible in different clinical conditions, rapid, and applicable for research and clinical practice. PMID:25935632

  3. Three-Dimensional Computer-Aided Detection of Microcalcification Clusters in Digital Breast Tomosynthesis

    PubMed Central

    Jeong, Ji-wook; Chae, Seung-Hoon; Chae, Eun Young; Kim, Hak Hee; Choi, Young-Wook; Lee, Sooyeul

    2016-01-01

    We propose computer-aided detection (CADe) algorithm for microcalcification (MC) clusters in reconstructed digital breast tomosynthesis (DBT) images. The algorithm consists of prescreening, MC detection, clustering, and false-positive (FP) reduction steps. The DBT images containing the MC-like objects were enhanced by a multiscale Hessian-based three-dimensional (3D) objectness response function and a connected-component segmentation method was applied to extract the cluster seed objects as potential clustering centers of MCs. Secondly, a signal-to-noise ratio (SNR) enhanced image was also generated to detect the individual MC candidates and prescreen the MC-like objects. Each cluster seed candidate was prescreened by counting neighboring individual MC candidates nearby the cluster seed object according to several microcalcification clustering criteria. As a second step, we introduced bounding boxes for the accepted seed candidate, clustered all the overlapping cubes, and examined. After the FP reduction step, the average number of FPs per case was estimated to be 2.47 per DBT volume with a sensitivity of 83.3%. PMID:27274993

  4. Computer-aided three-dimensional reconstruction of main vessels in hemangiomas

    PubMed Central

    Wang, Guanghuan; Zhong, Jun; Li, Jianhong; Zhang, Xuan; Duan, Shouxing; Fu, Maxian; Wang, Fusheng; Jiang, Xuewu

    2015-01-01

    This study aimed to investigate three-dimensional (3-D) morphological features of the main vessel architecture of human hemangioma. Serial sections of specimens from three cases of children hemangioma were stained with hematoxylin and eosin (HE) to visualize the vessels. Serial images were taken and processed with computer-assisted 3-D reconstruction. Partial 3-D structure reconstruction of vessel morphology in hemangioma revealed strange distribution and branching, which were different from normal vessels of the human skin. The 3-5 microvascular was most common in hemangioma. We observed respective characteristics of three cases: 1 case showed uniform artery vein distribution accompanied by running trend; 1 case showed main artery distribution and less vein distribution, and there were many blood sinus in the shallow surface close to the skin; another case showed vein distribution in the middle of antrum. In conclusion, digital vascular model of 3-D structure of main vessel hemangioma provides a new way for the diagnosis and treatment of hemangioma of children. PMID:25932103

  5. Computational synthesis of ultrasound breast images from a three-dimensional anatomical model

    NASA Astrophysics Data System (ADS)

    Shen, Yi-Ting; Lacefield, James C.

    2005-04-01

    A three-dimensional breast anatomy model has been implemented using spline surfaces and fractal structures to represent the architecture of the lactiferous ducts, mammary fat lobules, skin, and supporting connective tissues. The model randomly varies user-specified structural parameters to provide an unlimited number of realizations of the gross anatomy. Cross-sectional views extracted by slicing through a realization of the model are input to a two-dimensional k-space (i.e., spatial frequency domain) ultrasound propagation simulator. The k-space simulator iterates pressure and particle velocity fields in 30-ns steps to compute scattering from the structures defined by the anatomical model and small random variations in compressibility that are added to generate speckle. A synthetic aperture method is employed to simulate B-mode imaging with a 5 MHz, 192-element linear array operated using multiple transmit focal zones and dynamic receive focusing. Simulated images of random-scattering phantoms possess approximately Rayleigh speckle statistics. The anatomical model is expected to yield images with speckle statistics comparable to clinical breast images. The long-term objectives of these simulations are to investigate sources of focus aberration in ultrasound breast imaging and the impact of aberration on cancer detection. [Work supported by an NSERC Discovery Grant.

  6. Percutaneous Transcatheter Mitral Valve Replacement: Patient-specific Three-dimensional Computer-based Heart Model and Prototyping.

    PubMed

    Vaquerizo, Beatriz; Theriault-Lauzier, Pascal; Piazza, Nicolo

    2015-12-01

    Mitral regurgitation is the most prevalent valvular heart disease worldwide. Despite the widespread availability of curative surgical intervention, a considerable proportion of patients with severe mitral regurgitation are not referred for treatment, largely due to the presence of left ventricular dysfunction, advanced age, and comorbid illnesses. Transcatheter mitral valve replacement is a promising therapeutic alternative to traditional surgical valve replacement. The complex anatomical and pathophysiological nature of the mitral valvular complex, however, presents significant challenges to the successful design and implementation of novel transcatheter mitral replacement devices. Patient-specific 3-dimensional computer-based models enable accurate assessment of the mitral valve anatomy and preprocedural simulations for transcatheter therapies. Such information may help refine the design features of novel transcatheter mitral devices and enhance procedural planning. Herein, we describe a novel medical image-based processing tool that facilitates accurate, noninvasive assessment of the mitral valvular complex, by creating precise three-dimensional heart models. The 3-dimensional computer reconstructions are then converted to a physical model using 3-dimensional printing technology, thereby enabling patient-specific assessment of the interaction between device and patient. It may provide new opportunities for a better understanding of the mitral anatomy-pathophysiology-device interaction, which is of critical importance for the advancement of transcatheter mitral valve replacement.

  7. Three-dimensional computed tomographic evaluation of Le Fort III distraction osteogenesis with an external device in syndromic craniosynostosis.

    PubMed

    Wery, M F; Nada, R M; van der Meulen, J J; Wolvius, E B; Ongkosuwito, E M

    2015-03-01

    There is little anteroposterior growth of the midface in patients with syndromic craniosynostosis who are followed up over time without intervention. A Le Fort III with distraction osteogenesis can be done to correct this. This is a controlled way in which to achieve appreciable stable advancement of the midface without the need for bone grafting, but the vector of the movement is not always predictable. The purpose of this study was to evaluate the 3-dimensional effect of Le Fort III distraction osteogenesis with an external frame. Ten patients (aged 7-19 years) who had the procedure were included in the study. The le Fort III procedure and the placement of the external frame were followed by an activation period and then a 3-month retention period. Computed tomographic (CT) images taken before and after operation were converted and loaded into 3-dimensional image rendering software and compared with the aid of a paired sample t test and a colour-coded qualitative analysis. Comparison of the CT data before and after distraction indicated that the amount of midface advancement was significant. Le Fort III distraction osteogenesis is an effective way to advance the midface. However, the movement during osteogenesis is not always exactly in the intended direction, and a secondary operation is often necessary. Three-dimensional evaluation over a longer period of time is necessary.

  8. Three-dimensional computed tomographic evaluation of Le Fort III distraction osteogenesis with an external device in syndromic craniosynostosis.

    PubMed

    Wery, M F; Nada, R M; van der Meulen, J J; Wolvius, E B; Ongkosuwito, E M

    2015-03-01

    There is little anteroposterior growth of the midface in patients with syndromic craniosynostosis who are followed up over time without intervention. A Le Fort III with distraction osteogenesis can be done to correct this. This is a controlled way in which to achieve appreciable stable advancement of the midface without the need for bone grafting, but the vector of the movement is not always predictable. The purpose of this study was to evaluate the 3-dimensional effect of Le Fort III distraction osteogenesis with an external frame. Ten patients (aged 7-19 years) who had the procedure were included in the study. The le Fort III procedure and the placement of the external frame were followed by an activation period and then a 3-month retention period. Computed tomographic (CT) images taken before and after operation were converted and loaded into 3-dimensional image rendering software and compared with the aid of a paired sample t test and a colour-coded qualitative analysis. Comparison of the CT data before and after distraction indicated that the amount of midface advancement was significant. Le Fort III distraction osteogenesis is an effective way to advance the midface. However, the movement during osteogenesis is not always exactly in the intended direction, and a secondary operation is often necessary. Three-dimensional evaluation over a longer period of time is necessary. PMID:25605236

  9. TEMPEST: A three-dimensional time-dependent computer program for hydrothermal analysis: Volume 1, Numerical methods and input instructions

    SciTech Connect

    Trent, D.S.; Eyler, L.L.; Budden, M.J.

    1983-09-01

    This document describes the numerical methods, current capabilities, and the use of the TEMPEST (Version L, MOD 2) computer program. TEMPEST is a transient, three-dimensional, hydrothermal computer program that is designed to analyze a broad range of coupled fluid dynamic and heat transfer systems of particular interest to the Fast Breeder Reactor thermal-hydraulic design community. The full three-dimensional, time-dependent equations of motion, continuity, and heat transport are solved for either laminar or turbulent fluid flow, including heat diffusion and generation in both solid and liquid materials. 10 refs., 22 figs., 2 tabs.

  10. A method for computation of inviscid three-dimensional flow over blunt bodies having large embedded subsonic regions

    NASA Technical Reports Server (NTRS)

    Weilmuenster, K. J.; Hamilton, H. H., II

    1981-01-01

    A computational technique for computing the three-dimensional inviscid flow over blunt bodies having large regions of embedded subsonic flow is detailed. Results, which were obtained using the CDC Cyber 203 vector processing computer, are presented for several analytic shapes with some comparison to experimental data. Finally, windward surface pressure computations over the first third of the Space Shuttle vehicle are compared with experimental data for angles of attack between 25 and 45 degrees.

  11. Three dimensional automatic refinement method for transient small strain elastoplastic finite element computations

    NASA Astrophysics Data System (ADS)

    Biotteau, E.; Gravouil, A.; Lubrecht, A. A.; Combescure, A.

    2012-01-01

    In this paper, the refinement strategy based on the "Non-Linear Localized Full MultiGrid" solver originally published in Int. J. Numer. Meth. Engng 84(8):947-971 (2010) for 2-D structural problems is extended to 3-D simulations. In this context, some extra information concerning the refinement strategy and the behavior of the error indicators are given. The adaptive strategy is dedicated to the accurate modeling of elastoplastic materials with isotropic hardening in transient dynamics. A multigrid solver with local mesh refinement is used to reduce the amount of computational work needed to achieve an accurate calculation at each time step. The locally refined grids are automatically constructed, depending on the user prescribed accuracy. The discretization error is estimated by a dedicated error indicator within the multigrid method. In contrast to other adaptive procedures, where grids are erased when new ones are generated, the previous solutions are used recursively to reduce the computing time on the new mesh. Moreover, the adaptive strategy needs no costly coarsening method as the mesh is reassessed at each time step. The multigrid strategy improves the convergence rate of the non-linear solver while ensuring the information transfer between the different meshes. It accounts for the influence of localized non-linearities on the whole structure. All the steps needed to achieve the adaptive strategy are automatically performed within the solver such that the calculation does not depend on user experience. This paper presents three-dimensional results using the adaptive multigrid strategy on elastoplastic structures in transient dynamics and in a linear geometrical framework. Isoparametric cubic elements with energy and plastic work error indicators are used during the calculation.

  12. Generalization of Spatial Channel Theory to Three-Dimensional x-y-z Transport Computations

    SciTech Connect

    I. K. Abu-Shumays; M. A. Hunter; R. L. Martz; J. M. Risner

    2002-03-12

    Spatial channel theory, initially introduced in 1977 by M. L. Williams and colleagues at ORNL, is a powerful tool for shield design optimization. It focuses on so called ''contributon'' flux and current of particles (a fraction of the total of neutrons, photons, etc.) which contribute directly or through their progeny to a pre-specified response, such as a detector reading, dose rate, reaction rate, etc., at certain locations of interest. Particles that do not contribute directly or indirectly to the pre-specified response, such as particles that are absorbed or leak out, are ignored. Contributon fluxes and currents are computed based on combined forward and adjoint transport solutions. The initial concepts were considerably improved by Abu-Shumays, Selva, and Shure by introducing steam functions and response flow functions. Plots of such functions provide both qualitative and quantitative information on dominant particle flow paths and identify locations within a shield configuration that are important in contributing to the response of interest. Previous work was restricted to two dimensional (2-D) x-y rectangular and r-z cylindrical geometries. This paper generalizes previous work to three-dimensional x-y-z geometry, since it is now practical to solve realistic 3-D problems with multidimensional transport programs. As in previous work, new analytic expressions are provided for folding spherical harmonics representations of forward and adjoint transport flux solutions. As a result, the main integrals involve in spatial channel theory are computed exactly and more efficiently than by numerical quadrature. The analogy with incompressible fluid flow is also applied to obtain visual qualitative and quantitative measures of important streaming paths that could prove vital for shield design optimization. Illustrative examples are provided. The connection between the current paper and the excellent work completed by M. L. Williams in 1991 is also discussed.

  13. Parallel Computation of Three-Dimensional Flows using Overlapping Grids with Adaptive Mesh Refinement

    SciTech Connect

    Henshaw, W; Schwendeman, D

    2007-11-15

    This paper describes an approach for the numerical solution of time-dependent partial differential equations in complex three-dimensional domains. The domains are represented by overlapping structured grids, and block-structured adaptive mesh refinement (AMR) is employed to locally increase the grid resolution. In addition, the numerical method is implemented on parallel distributed-memory computers using a domain-decomposition approach. The implementation is flexible so that each base grid within the overlapping grid structure and its associated refinement grids can be independently partitioned over a chosen set of processors. A modified bin-packing algorithm is used to specify the partition for each grid so that the computational work is evenly distributed amongst the processors. All components of the AMR algorithm such as error estimation, regridding, and interpolation are performed in parallel. The parallel time-stepping algorithm is illustrated for initial-boundary-value problems involving a linear advection-diffusion equation and the (nonlinear) reactive Euler equations. Numerical results are presented for both equations to demonstrate the accuracy and correctness of the parallel approach. Exact solutions of the advection-diffusion equation are constructed, and these are used to check the corresponding numerical solutions for a variety of tests involving different overlapping grids, different numbers of refinement levels and refinement ratios, and different numbers of processors. The problem of planar shock diffraction by a sphere is considered as an illustration of the numerical approach for the Euler equations, and a problem involving the initiation of a detonation from a hot spot in a T-shaped pipe is considered to demonstrate the numerical approach for the reactive case. For both problems, the solutions are shown to be well resolved on the finest grid. The parallel performance of the approach is examined in detail for the shock diffraction problem.

  14. Computer-aided three dimensional assessment of knee-joint cartilage with magnetic resonance imaging.

    PubMed

    Muensterer, O J; Eckstein, F; Hahn, D; Putz, R

    1996-07-01

    OBJECTIVE: An MRI-based technique for non-invasive assessment of the quantitative distribution of articular cartilage in the knee-joint was to be developed, and its accuracy and reproducibility tested. DESIGN: Three cadaveric specimens and one patient were studied and MRI measurements compared with anatomical sections or arthroscopy. BACKGROUND: Data on articular cartilage thickness is needed for the design of computer models, determination of cartilage material properties from arthroscopy and staging of osteoarthrosis. METHODS: The knees were imaged using strongly T2-weighted spin-echo and FISP-3D sequences. After digital subtraction and automatic segmentation, three-dimensional reconstruction of the cartilages was performed. Surface areas, volumes and the mean cartilage thickness were calculated, and the regional distribution displayed after trigonometric correction. RESULTS: The difference between MRI volumes and those obtained from the sections ranged from 4 to 21% with a reproducibility of +/-4 to +/-12% after repositioning. The thickness maps obtained with MRI were very similar to those from the sections. In the patient, a full-thickness defect demonstrated with MRI was verified by arthroscopy. CONCLUSIONS: Using the technique presented, the quantitative distribution of knee-joint cartilage may be analysed non-invasively, accurately, and in a very time-effective manner, in cadavers and in living subjects. RELEVANCE: To date there exists no accepted method for the accurate, fast and non-invasive assessment of articular cartilage thickness. Such a technique is, however, very helpful for generating computer models of diarthrodial joints, determination of cartilage material properties during arthroscopy, staging of joint disease, and objective control of chondroprotective treatment.

  15. Rigorous joining of advanced reduced-dimensional beam models to three-dimensional finite element models

    NASA Astrophysics Data System (ADS)

    Song, Huimin

    In the aerospace and automotive industries, many finite element analyses use lower-dimensional finite elements such as beams, plates and shells, to simplify the modeling. These simplified models can greatly reduce the computation time and cost; however, reduced-dimensional models may introduce inaccuracies, particularly near boundaries and near portions of the structure where reduced-dimensional models may not apply. Another factor in creation of such models is that beam-like structures frequently have complex geometry, boundaries and loading conditions, which may make them unsuitable for modeling with single type of element. The goal of this dissertation is to develop a method that can accurately and efficiently capture the response of a structure by rigorous combination of a reduced-dimensional beam finite element model with a model based on full two-dimensional (2D) or three-dimensional (3D) finite elements. The first chapter of the thesis gives the background of the present work and some related previous work. The second chapter is focused on formulating a system of equations that govern the joining of a 2D model with a beam model for planar deformation. The essential aspect of this formulation is to find the transformation matrices to achieve deflection and load continuity on the interface. Three approaches are provided to obtain the transformation matrices. An example based on joining a beam to a 2D finite element model is examined, and the accuracy of the analysis is studied by comparing joint results with the full 2D analysis. The third chapter is focused on formulating the system of equations for joining a beam to a 3D finite element model for static and free-vibration problems. The transition between the 3D elements and beam elements is achieved by use of the stress recovery technique of the variational-asymptotic method as implemented in VABS (the Variational Asymptotic Beam Section analysis). The formulations for an interface transformation matrix and

  16. Performance analysis of three dimensional integral equation computations on a massively parallel computer. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Logan, Terry G.

    1994-01-01

    The purpose of this study is to investigate the performance of the integral equation computations using numerical source field-panel method in a massively parallel processing (MPP) environment. A comparative study of computational performance of the MPP CM-5 computer and conventional Cray-YMP supercomputer for a three-dimensional flow problem is made. A serial FORTRAN code is converted into a parallel CM-FORTRAN code. Some performance results are obtained on CM-5 with 32, 62, 128 nodes along with those on Cray-YMP with a single processor. The comparison of the performance indicates that the parallel CM-FORTRAN code near or out-performs the equivalent serial FORTRAN code for some cases.

  17. Three Dimensional Imaging of Paraffin Embedded Human Lung Tissue Samples by Micro-Computed Tomography

    PubMed Central

    Scott, Anna E.; Vasilescu, Dragos M.; Seal, Katherine A. D.; Keyes, Samuel D.; Mavrogordato, Mark N.; Hogg, James C.; Sinclair, Ian; Warner, Jane A.; Hackett, Tillie-Louise; Lackie, Peter M.

    2015-01-01

    Background Understanding the three-dimensional (3-D) micro-architecture of lung tissue can provide insights into the pathology of lung disease. Micro computed tomography (µCT) has previously been used to elucidate lung 3D histology and morphometry in fixed samples that have been stained with contrast agents or air inflated and dried. However, non-destructive microstructural 3D imaging of formalin-fixed paraffin embedded (FFPE) tissues would facilitate retrospective analysis of extensive tissue archives of lung FFPE lung samples with linked clinical data. Methods FFPE human lung tissue samples (n = 4) were scanned using a Nikon metrology µCT scanner. Semi-automatic techniques were used to segment the 3D structure of airways and blood vessels. Airspace size (mean linear intercept, Lm) was measured on µCT images and on matched histological sections from the same FFPE samples imaged by light microscopy to validate µCT imaging. Results The µCT imaging protocol provided contrast between tissue and paraffin in FFPE samples (15mm x 7mm). Resolution (voxel size 6.7 µm) in the reconstructed images was sufficient for semi-automatic image segmentation of airways and blood vessels as well as quantitative airspace analysis. The scans were also used to scout for regions of interest, enabling time-efficient preparation of conventional histological sections. The Lm measurements from µCT images were not significantly different to those from matched histological sections. Conclusion We demonstrated how non-destructive imaging of routinely prepared FFPE samples by laboratory µCT can be used to visualize and assess the 3D morphology of the lung including by morphometric analysis. PMID:26030902

  18. The Availability of Radiological Measurement of Femoral Anteversion Angle: Three-Dimensional Computed Tomography Reconstruction

    PubMed Central

    Byun, Ha Young; Shin, Heesuk; Lee, Eun Shin; Kong, Min Sik; Lee, Seung Hun

    2016-01-01

    Objective To assess the intra-rater and inter-rater reliability for measuring femoral anteversion angle (FAA) by a radiographic method using three-dimensional computed tomography reconstruction (3D-CT). Methods The study included 82 children who presented with intoeing gait. 3D-CT data taken between 2006 and 2014 were retrospectively reviewed. FAA was measured by 3D-CT. FAA is defined as the angle between the long axis of the femur neck and condylar axis of the distal femur. FAA measurement was performed twice at both lower extremities by each rater. The intra-rater and inter-rater reliability were calculated by intraclass correlation coefficient (ICC). Results One hundred and sixty-four lower limbs of 82 children (31 boys and 51 girls, 6.3±3.2 years old) were included. The ICCs of intra-rater measurement for the angle of femoral neck axis (NA) were 0.89 for rater A and 0.96 for rater B, and those of condylar axis (CA) were 0.99 for rater A and 0.99 for rater B, respectively. The ICC of inter-rater measurement for the angle of NA was 0.89 and that of CA was 0.92. By each rater, the ICCs of the intrarater measurement for FAA were 0.97 for rater A and 0.95 for rater B, respectively and the ICC of the inter-rater measurement for FAA was 0.89. Conclusion The 3D-CT measures for FAA are reliable within individual raters and between different raters. The 3D-CT measures of FAA can be a useful method for accurate diagnosis and follow-up of femoral anteversion. PMID:27152273

  19. High-immersion three-dimensional display of the numerical computer model

    NASA Astrophysics Data System (ADS)

    Xing, Shujun; Yu, Xunbo; Zhao, Tianqi; Cai, Yuanfa; Chen, Duo; Chen, Zhidong; Sang, Xinzhu

    2013-08-01

    High-immersion three-dimensional (3D) displays making them valuable tools for many applications, such as designing and constructing desired building houses, industrial architecture design, aeronautics, scientific research, entertainment, media advertisement, military areas and so on. However, most technologies provide 3D display in the front of screens which are in parallel with the walls, and the sense of immersion is decreased. To get the right multi-view stereo ground image, cameras' photosensitive surface should be parallax to the public focus plane and the cameras' optical axes should be offset to the center of public focus plane both atvertical direction and horizontal direction. It is very common to use virtual cameras, which is an ideal pinhole camera to display 3D model in computer system. We can use virtual cameras to simulate the shooting method of multi-view ground based stereo image. Here, two virtual shooting methods for ground based high-immersion 3D display are presented. The position of virtual camera is determined by the people's eye position in the real world. When the observer stand in the circumcircle of 3D ground display, offset perspective projection virtual cameras is used. If the observer stands out the circumcircle of 3D ground display, offset perspective projection virtual cameras and the orthogonal projection virtual cameras are adopted. In this paper, we mainly discussed the parameter setting of virtual cameras. The Near Clip Plane parameter setting is the main point in the first method, while the rotation angle of virtual cameras is the main point in the second method. In order to validate the results, we use the D3D and OpenGL to render scenes of different viewpoints and generate a stereoscopic image. A realistic visualization system for 3D models is constructed and demonstrated for viewing horizontally, which provides high-immersion 3D visualization. The displayed 3D scenes are compared with the real objects in the real world.

  20. Development of a percentile based three-dimensional model of the buttocks in computer system

    NASA Astrophysics Data System (ADS)

    Wang, Lijing; He, Xueli; Li, Hongpeng

    2016-05-01

    There are diverse products related to human buttocks, which need to be designed, manufactured and evaluated with 3D buttock model. The 3D buttock model used in present research field is just simple approximate model similar to human buttocks. The 3D buttock percentile model is highly desired in the ergonomics design and evaluation for these products. So far, there is no research on the percentile sizing system of human 3D buttock model. So the purpose of this paper is to develop a new method for building three-dimensional buttock percentile model in computer system. After scanning the 3D shape of buttocks, the cloud data of 3D points is imported into the reverse engineering software (Geomagic) for the reconstructing of the buttock surface model. Five characteristic dimensions of the buttock are measured through mark-points after models being imported into engineering software CATIA. A series of space points are obtained by the intersecting of the cutting slices and 3D buttock surface model, and then are ordered based on the sequence number of the horizontal and vertical slices. The 1st, 5th, 50th, 95th, 99th percentile values of the five dimensions and the spatial coordinate values of the space points are obtained, and used to reconstruct percentile buttock models. This research proposes a establishing method of percentile sizing system of buttock 3D model based on the percentile values of the ischial tuberosities diameter, the distances from margin to ischial tuberosity and the space coordinates value of coordinate points, for establishing the Nth percentile 3D buttock model and every special buttock types model. The proposed method also serves as a useful guidance for the other 3D percentile models establishment for other part in human body with characteristic points.

  1. Three-dimensional imaging of trabecular bone using the computer numerically controlled milling technique.

    PubMed

    Beck, J D; Canfield, B L; Haddock, S M; Chen, T J; Kothari, M; Keaveny, T M

    1997-09-01

    Although various techniques exist for high-resolution, three-dimensional imaging of trabecular bone, a common limitation is that resolution depends on specimen size. Most techniques also have limited availability due to their expense and complexity. We therefore developed a simple, accurate technique that has a resolution that is independent of specimen size. Thin layers are serially removed from an embedded bone specimen using a computer numerically controlled (CNC) milling machine, and each exposed cross section is imaged using a low-magnification digital camera. Precise positioning of the specimen under the camera is achieved using the programmable feature of the CNC milling machine. Large specimens are imaged without loss of resolution by moving the specimen under the camera such that an array of field-of-views spans the full cross section. The images from each field-of-view are easily assembled and registered in the postprocessing. High-contrast sections are achieved by staining the bone black with silver nitrate and embedding it in whitened methylmethacrylate. Due to the high contrast nature and high resolution of the images, thresholding at a single value yielded excellent predictions of morphological parameters such as bone volume fraction (mean +/- SD percent error = 0.70 +/- 4.28%). The main limitations of this fully automated "CNC milling technique" are that the specimen is destroyed and the process is relatively slow. However, because of its accuracy, independence of image resolution from specimen size, and ease of implementation, this new technique is an excellent method for ex situ imaging of trabecular architecture, particularly when high resolution is required.

  2. Application of computer generated color graphic techniques to the processing and display of three dimensional fluid dynamic data

    NASA Technical Reports Server (NTRS)

    Anderson, B. H.; Putt, C. W.; Giamati, C. C.

    1981-01-01

    Color coding techniques used in the processing of remote sensing imagery were adapted and applied to the fluid dynamics problems associated with turbofan mixer nozzles. The computer generated color graphics were found to be useful in reconstructing the measured flow field from low resolution experimental data to give more physical meaning to this information and in scanning and interpreting the large volume of computer generated data from the three dimensional viscous computer code used in the analysis.

  3. Computer program for quasi-three-dimensional calculation of surface velocities and choking flow for turbomachine blade rows

    NASA Technical Reports Server (NTRS)

    Katsanis, T.

    1972-01-01

    Computer program, CHANEL, can obtain quasi-three-dimensional solutions in any well-guided channel. Conditions that can be handled by program that could not be handled previously are nonuniform inlet temperature, pressure, prewhirl, nonaxial flow where meridional flow angle, meridional stream-line curvature, and radius can vary as desired from hub to tip.

  4. The Impact of Three-Dimensional Computational Modeling on Student Understanding of Astronomy Concepts: A Qualitative Analysis. Research Report

    ERIC Educational Resources Information Center

    Hansen, John; Barnett, Michael; MaKinster, James; Keating, Thomas

    2004-01-01

    In this study, we explore an alternate mode for teaching and learning the dynamic, three-dimensional (3D) relationships that are central to understanding astronomical concepts. To this end, we implemented an innovative undergraduate course in which we used inexpensive computer modeling tools. As the second of a two-paper series, this report…

  5. The Virtual Solar System Project: Developing Conceptual Understanding of Astronomical Concepts through Building Three-Dimensional Computational Models.

    ERIC Educational Resources Information Center

    Keating, Thomas; Barnett, Michael; Barab, Sasha A.; Hay, Kenneth E.

    2002-01-01

    Describes the Virtual Solar System (VSS) course which is one of the first attempts to integrate three-dimensional (3-D) computer modeling as a central component of introductory undergraduate education. Assesses changes in student understanding of astronomy concepts as a result of participating in an experimental introductory astronomy course in…

  6. A three-dimensional turbulent heat transfer analysis for advanced tubular rocket thrust chambers

    NASA Technical Reports Server (NTRS)

    Kacynski, Kenneth J.

    1990-01-01

    Heat transfer was analyzed in the throat region of a plug and spool rocket engine for both smooth and corrugated walls. A three-dimensional, Navier-Stokes code was used for the analysis. The turbulence model in the code was modified to handle turbulence suppression in the crevice region of the corrugated wall. The overall heat transfer at the throat for the corrugated wall was 34 percent higher than it was for the smooth wall for comparable rocket flow conditions.

  7. Three-dimensional computations of cross-flow injection and combustion in a supersonic flow

    NASA Technical Reports Server (NTRS)

    Carpenter, M. H.

    1989-01-01

    A low-storage version of the SPARK3D code which is based on the temporally second-order accurate MacCormack (1969) explicit scheme is used to solve the governing equations for three-dimensional chemically reacting flows with finite-rate chemistry. The code includes a fourth-order compact spatial scheme capable of providing higher order spatial accuracy, and it is used to study two-dimensional linear advection, two-dimensional Euler flow, and three-dimensional viscous flow. Also considered are the injection, mixing, and combustion of hydrogen in a supersonic cross stream.

  8. High-speed, sparse-sampling three-dimensional photoacoustic computed tomography in vivo based on principal component analysis

    NASA Astrophysics Data System (ADS)

    Meng, Jing; Jiang, Zibo; Wang, Lihong V.; Park, Jongin; Kim, Chulhong; Sun, Mingjian; Zhang, Yuanke; Song, Liang

    2016-07-01

    Photoacoustic computed tomography (PACT) has emerged as a unique and promising technology for multiscale biomedical imaging. To fully realize its potential for various preclinical and clinical applications, development of systems with high imaging speed, reasonable cost, and manageable data flow are needed. Sparse-sampling PACT with advanced reconstruction algorithms, such as compressed-sensing reconstruction, has shown potential as a solution to this challenge. However, most such algorithms require iterative reconstruction and thus intense computation, which may lead to excessively long image reconstruction times. Here, we developed a principal component analysis (PCA)-based PACT (PCA-PACT) that can rapidly reconstruct high-quality, three-dimensional (3-D) PACT images with sparsely sampled data without requiring an iterative process. In vivo images of the vasculature of a human hand were obtained, thus validating the PCA-PACT method. The results showed that, compared with the back-projection (BP) method, PCA-PACT required ˜50% fewer measurements and ˜40% less time for image reconstruction, and the imaging quality was almost the same as that for BP with full sampling. In addition, compared with compressed sensing-based PACT, PCA-PACT had approximately sevenfold faster imaging speed with higher imaging accuracy. This work suggests a promising approach for low-cost, 3-D, rapid PACT for various biomedical applications.

  9. Three-Dimensional Computational Reconstruction of Tissues with Hollow Spherical Morphologies using Single-Cell Gene Expression Data

    PubMed Central

    Heller, Stefan

    2015-01-01

    Single-cell gene expression analysis has contributed to a better understanding of the transcriptional heterogeneity in a variety of model systems, including those used in research in developmental, cancer, and stem cell biology. Nowadays, technological advances facilitate the generation of large gene expression datasets in high-throughput format. Strategies are needed to pertinently visualize this information in a tissue–structure related context, so as to improve data analysis and aid the drawing of meaningful conclusions. Here we describe an approach that utilizes spatial properties of the tissue source to enable the reconstruction of hollow sphere–shaped tissues and organs from single-cell gene expression data in three-dimensional space. To demonstrate our method, we used cells of the mouse otocyst and the renal vesicle as examples. This protocol presents a straightforward computational expression analysis workflow and is implemented on the MATLAB and R statistical computing and graphics software platforms. Hands-on time for typical experiments can be less than 1 h using a standard desktop PC or Mac. PMID:25675210

  10. Locomotion in ornithischian dinosaurs: an assessment using three-dimensional computational modelling.

    PubMed

    Maidment, Susannah C R; Bates, Karl T; Falkingham, Peter L; VanBuren, Collin; Arbour, Victoria; Barrett, Paul M

    2014-08-01

    Ornithischian dinosaurs were primitively bipedal with forelimbs modified for grasping, but quadrupedalism evolved in the clade on at least three occasions independently. Outside of Ornithischia, quadrupedality from bipedal ancestors has only evolved on two other occasions, making this one of the rarest locomotory transitions in tetrapod evolutionary history. The osteological and myological changes associated with these transitions have only recently been documented, and the biomechanical consequences of these changes remain to be examined. Here, we review previous approaches to understanding locomotion in extinct animals, which can be broadly split into form-function approaches using analogy based on extant animals, limb-bone scaling, and computational approaches. We then carry out the first systematic attempt to quantify changes in locomotor muscle function in bipedal and quadrupedal ornithischian dinosaurs. Using three-dimensional computational modelling of the major pelvic locomotor muscle moment arms, we examine similarities and differences among individual taxa, between quadrupedal and bipedal taxa, and among taxa representing the three major ornithischian lineages (Thyreophora, Ornithopoda, Marginocephalia). Our results suggest that the ceratopsid Chasmosaurus and the ornithopod Hypsilophodon have relatively low moment arms for most muscles and most functions, perhaps suggesting poor locomotor performance in these taxa. Quadrupeds have higher abductor moment arms than bipeds, which we suggest is due to the overall wider bodies of the quadrupeds modelled. A peak in extensor moment arms at more extended hip angles and lower medial rotator moment arms in quadrupeds than in bipeds may be due to a more columnar hindlimb and loss of medial rotation as a form of lateral limb support in quadrupeds. We are not able to identify trends in moment arm evolution across Ornithischia as a whole, suggesting that the bipedal ancestry of ornithischians did not constrain the

  11. Locomotion in ornithischian dinosaurs: an assessment using three-dimensional computational modelling.

    PubMed

    Maidment, Susannah C R; Bates, Karl T; Falkingham, Peter L; VanBuren, Collin; Arbour, Victoria; Barrett, Paul M

    2014-08-01

    Ornithischian dinosaurs were primitively bipedal with forelimbs modified for grasping, but quadrupedalism evolved in the clade on at least three occasions independently. Outside of Ornithischia, quadrupedality from bipedal ancestors has only evolved on two other occasions, making this one of the rarest locomotory transitions in tetrapod evolutionary history. The osteological and myological changes associated with these transitions have only recently been documented, and the biomechanical consequences of these changes remain to be examined. Here, we review previous approaches to understanding locomotion in extinct animals, which can be broadly split into form-function approaches using analogy based on extant animals, limb-bone scaling, and computational approaches. We then carry out the first systematic attempt to quantify changes in locomotor muscle function in bipedal and quadrupedal ornithischian dinosaurs. Using three-dimensional computational modelling of the major pelvic locomotor muscle moment arms, we examine similarities and differences among individual taxa, between quadrupedal and bipedal taxa, and among taxa representing the three major ornithischian lineages (Thyreophora, Ornithopoda, Marginocephalia). Our results suggest that the ceratopsid Chasmosaurus and the ornithopod Hypsilophodon have relatively low moment arms for most muscles and most functions, perhaps suggesting poor locomotor performance in these taxa. Quadrupeds have higher abductor moment arms than bipeds, which we suggest is due to the overall wider bodies of the quadrupeds modelled. A peak in extensor moment arms at more extended hip angles and lower medial rotator moment arms in quadrupeds than in bipeds may be due to a more columnar hindlimb and loss of medial rotation as a form of lateral limb support in quadrupeds. We are not able to identify trends in moment arm evolution across Ornithischia as a whole, suggesting that the bipedal ancestry of ornithischians did not constrain the

  12. Parallel Computation and Visualization of Three-dimensional, Time-dependent, Thermal Convective Flows

    NASA Technical Reports Server (NTRS)

    Wang, P.; Li, P.

    1998-01-01

    A high-resolution numerical study on parallel systems is reported on three-dimensional, time-dependent, thermal convective flows. A parallel implentation on the finite volume method with a multigrid scheme is discussed, and a parallel visualization systemm is developed on distributed systems for visualizing the flow.

  13. Interferograms, schlieren, and shadowgraphs constructed from real- and ideal-gas, two- and three-dimensional computed flowfields

    NASA Technical Reports Server (NTRS)

    Yates, Leslie A.

    1993-01-01

    The construction of interferograms, schlieren, and shadowgraphs from computed flowfield solutions permits one-to-one comparisons of computed and experimental results. A method of constructing these images from both ideal- and real-gas, two and three-dimensional computed flowfields is described. The computational grids can be structured or unstructured, and multiple grids are an option. Constructed images are shown for several types of computed flows including nozzle, wake, and reacting flows; comparisons to experimental images are also shown. In addition, th sensitivity of these images to errors in the flowfield solution is demonstrated, and the constructed images can be used to identify problem areas in the computations.

  14. Interferograms, Schlieren, and Shadowgraphs Constructed from Real- and Ideal-Gas, Two- and Three-Dimensional Computed Flowfields

    NASA Technical Reports Server (NTRS)

    Yates, Leslie A.

    1992-01-01

    The construction of interferograms, schlieren, and shadowgraphs from computed flowfield solutions permits one-to-one comparisons of computed and experimental results. A method for constructing these images from both ideal- and real-gas, two- and three-dimensional computed flowfields is described. The computational grids can be structured or unstructured, and multiple grids are an option. Constructed images are shown for several types of computed flows including nozzle, wake, and reacting flows; comparisons to experimental images are also shown. In addition, the sensitivity of these images to errors in the flowfield solution is demonstrated, and the constructed images can be used to identify problem areas in the computations.

  15. A Three-Dimensional Turbulent Heat Transfer Analysis for Advanced Tubular Rocket Thrust Chambers

    NASA Technical Reports Server (NTRS)

    Kacynski, Kenneth J.

    1990-01-01

    Heat transfer was analyzed in the throat region of a plug and spool rocket engine for both smooth and corrugated walls. A three-dimensional, Navier-Strokes code was used for the analysis. The turbulence model in the code was modified to handle turbulence suppression in the crevice region of the corrugated wall. Circumferential variations in the wall heat transfer was predicted for the corrugated wall. The overall heat transfer at the throat of the corrugated wall was 34 percent higher than it was for the smooth wall for comparable rocket flow conditions.

  16. Dedicated Three-dimensional Breast Computed Tomography: Lesion Characteristic Perception by Radiologists

    PubMed Central

    Kuzmiak, Cherie Marie; Cole, Elodia B; Zeng, Donglin; Tuttle, Laura A; Steed, Doreen; Pisano, Etta D

    2016-01-01

    Objectives: To assess radiologist confidence in the characterization of suspicious breast lesions with a dedicated three-dimensional breast computed tomography (DBCT) system in comparison to diagnostic two-dimensional digital mammography (dxDM). Materials and Methods: Twenty women were recruited who were to undergo a breast biopsy for a Breast Imaging-Reporting and Data System (BI-RADS) 4 or 5 lesion evaluated with dxDM in this Institutional Review Board-approved study. The enrolled subjects underwent imaging of the breast(s) of concern using DBCT. Seven radiologists reviewed the cases. Each reader compared DBCT to the dxDM and was asked to specify the lesion type and BI-RADS score for each lesion and modality. They also compared lesion characteristics: Shape for masses or morphology for calcifications; and margins for masses or distribution for calcifications between the modalities using confidence scores (0–100). Results: Twenty-four biopsied lesions were included in this study: 17 (70.8%) masses and 7 (29.2%) calcifications. Eight (33.3%) lesions were malignant, and 16 (66.7%) were benign. Across all lesions, there was no significant difference in the margin/distribution (Δ = −0.99, P = 0.84) and shape/morphology (Δ = −0.10, P = 0.98) visualization confidence scores of DBCT in relation to dxDM. However, analysis by lesion type showed a statistically significant increase in reader shape (Δ =11.34, P = 0.013) and margin (Δ =9.93, P = 0.023) visualization confidence with DBCT versus dxDM for masses and significant decrease in reader morphology (Δ = −29.95, P = 0.001) and distribution (Δ = −28.62, P = 0.002) visualization confidence for calcifications. Conclusion: Reader confidence in the characterization of suspicious masses is significantly improved with DBCT, but reduced for calcifications. Further study is needed to determine whether this technology can be used for breast cancer screening. PMID:27195180

  17. Combined three-dimensional computer vision and epi-illumination fluorescence imaging system

    NASA Astrophysics Data System (ADS)

    Gorpas, Dimitris; Yova, Dido; Politopoulos, Kostas

    2012-03-01

    Most of the reported fluorescence imaging methods and systems highlight the need for three-dimensional information of the inspected region surface geometry. The scope of this manuscript is to introduce an epi-illumination fluorescence imaging system, which has been enhanced with a binocular machine vision system for the translation of the inverse problem solution to the global coordinates system. The epi-illumination fluorescence imaging system is consisted of a structured scanning excitation source, which increases the spatial differentiation of the measured data, and a telecentric lens, which increases the angular differentiation. On the other hand, the binocular system is based on the projection of a structured light pattern on the inspected area, for the solution of the correspondence problem between the stereo pair. The functionality of the system has been evaluated on tissue phantoms and calibration objects. The reconstruction accuracy of the fluorophores distribution, as resulted from the root mean square error between the actual distribution and the outcome of the forward solver, was more than 80%. On the other hand, the surface three-dimensional reconstruction of the inspected region presented 0.067+/-0.004 mm accuracy, as resulted from the mean Euclidean distance between the three-dimensional position of the real world points and those reconstructed.

  18. Aerodynamic Analyses Requiring Advanced Computers, part 2

    NASA Technical Reports Server (NTRS)

    1975-01-01

    Papers given at the conference present the results of theoretical research on aerodynamic flow problems requiring the use of advanced computers. Topics discussed include two-dimensional configurations, three-dimensional configurations, transonic aircraft, and the space shuttle.

  19. Electron tomography and computer visualisation of a three-dimensional 'photonic' crystal in a butterfly wing-scale.

    PubMed

    Argyros, A; Manos, S; Large, M C J; McKenzie, D R; Cox, G C; Dwarte, D M

    2002-01-01

    A combination of transmission electron tomography and computer modelling has been used to determine the three-dimensional structure of the photonic crystals found in the wing-scales of the Kaiser-I-Hind butterfly (Teinopalpus imperialis). These scales presented challenges for electron microscopy because the periodicity of the structure was comparable to the thickness of a section and because of the complex connectivity of the object. The structure obtained has been confirmed by taking slices of the three-dimensional computer model constructed from the tomography and comparing these with transmission electron microscope (TEM) images of microtomed sections of the actual scale. The crystal was found to have chiral tetrahedral repeating units packed in a triclinic lattice.

  20. The development of an explicit thermochemical nonequilibrium algorithm and its application to compute three dimensional AFE flowfields

    NASA Technical Reports Server (NTRS)

    Palmer, Grant

    1989-01-01

    This study presents a three-dimensional explicit, finite-difference, shock-capturing numerical algorithm applied to viscous hypersonic flows in thermochemical nonequilibrium. The algorithm employs a two-temperature physical model. Equations governing the finite-rate chemical reactions are fully-coupled to the gas dynamic equations using a novel coupling technique. The new coupling method maintains stability in the explicit, finite-rate formulation while allowing relatively large global time steps. The code uses flux-vector accuracy. Comparisons with experimental data and other numerical computations verify the accuracy of the present method. The code is used to compute the three-dimensional flowfield over the Aeroassist Flight Experiment (AFE) vehicle at one of its trajectory points.

  1. GRID3C: Computer program for generation of C type multilevel, three dimensional and boundary conforming periodic grids

    NASA Technical Reports Server (NTRS)

    Dulikravich, D. S.

    1982-01-01

    A fast computer program, GRID3C, was developed for accurately generating periodic, boundary conforming, three dimensional, consecutively refined computational grids applicable to realistic axial turbomachinery geometries. The method is based on using two functions to generate two dimensional grids on a number of coaxial axisymmetric surfaces positioned between the centerbody and the outer radial boundary. These boundary fitted grids are of the C type and are characterized by quasi-orthogonality and geometric periodicity. The built in nonorthogonal coordinate stretchings and shearings cause the grid clustering in the regions of interest. The stretching parameters are part of the input to GRID3C. In its present version GRID3C can generate and store a maximum of four consecutively refined three dimensional grids. The output grid coordinates can be calculated either in the Cartesian or in the cylindrical coordinate system.

  2. Three-dimensional computed topography analysis of a patient with an unusual anatomy of the maxillary second and third molars

    PubMed Central

    Zhao, Jin; Li, Yan; Yang, Zhi-wei; Wang, Wei; Meng, Yan

    2011-01-01

    We present a case of a patient with rare anatomy of a maxillary second molar with three mesiobuccal root canals and a maxillary third molar with four separate roots, identified using multi-slice computed topography (CT) and three-dimensional reconstruction techniques. The described case enriched/might enrich our knowledge about possible anatomical aberrations of maxillary molars. In addition, we demonstrate the role of multi-slice CT as an objective tool for confirmatory diagnosis and successful endodontic management. PMID:22010581

  3. Quadcopter control in three-dimensional space using a noninvasive motor imagery based brain-computer interface

    PubMed Central

    LaFleur, Karl; Cassady, Kaitlin; Doud, Alexander; Shades, Kaleb; Rogin, Eitan; He, Bin

    2013-01-01

    Objective At the balanced intersection of human and machine adaptation is found the optimally functioning brain-computer interface (BCI). In this study, we report a novel experiment of BCI controlling a robotic quadcopter in three-dimensional physical space using noninvasive scalp EEG in human subjects. We then quantify the performance of this system using metrics suitable for asynchronous BCI. Lastly, we examine the impact that operation of a real world device has on subjects’ control with comparison to a two-dimensional virtual cursor task. Approach Five human subjects were trained to modulate their sensorimotor rhythms to control an AR Drone navigating a three-dimensional physical space. Visual feedback was provided via a forward facing camera on the hull of the drone. Individual subjects were able to accurately acquire up to 90.5% of all valid targets presented while travelling at an average straight-line speed of 0.69 m/s. Significance Freely exploring and interacting with the world around us is a crucial element of autonomy that is lost in the context of neurodegenerative disease. Brain-computer interfaces are systems that aim to restore or enhance a user’s ability to interact with the environment via a computer and through the use of only thought. We demonstrate for the first time the ability to control a flying robot in the three-dimensional physical space using noninvasive scalp recorded EEG in humans. Our work indicates the potential of noninvasive EEG based BCI systems to accomplish complex control in three-dimensional physical space. The present study may serve as a framework for the investigation of multidimensional non-invasive brain-computer interface control in a physical environment using telepresence robotics. PMID:23735712

  4. Users' manual for computer program for three-dimensional analysis of coupler-cavity traveling wave tubes

    NASA Technical Reports Server (NTRS)

    Omalley, T. A.

    1984-01-01

    The use of the coupled cavity traveling wave tube for space communications has led to an increased interest in improving the efficiency of the basic interaction process in these devices through velocity resynchronization and other methods. A flexible, three dimensional, axially symmetric, large signal computer program was developed for use on the IBM 370 time sharing system. A users' manual for this program is included.

  5. Three dimensional compressible boundary-layer computations for a finite swept wing

    NASA Technical Reports Server (NTRS)

    Nash, J. F.; Scruggs, R. M.

    1972-01-01

    Three-dimensional, compressible turbulent boundary-layer calculations have been performed for the finite supercritical wing of the NASA modified F8 transonic research airplane. Data on the boundary-layer thickness, displacement thickness, skin friction components, and integrated streamwise skin friction are presented for points along the streamwise stations of which the pressure measurements were previously made. Representative velocity profiles are shown, and boundary-layer-thickness contour plots and skin-friction vector plots are presented. Results are given for a Reynolds number of 1.5 million per foot, and for Mach numbers of 0.50 and 0.99.

  6. Comparisons of computed and measured three-dimensional velocity fields in a motored two-stroke engine

    SciTech Connect

    Amsden, A.A.; O'Rourke, P.J.; Butler, T.D. ); Meintjes, K.; Fansler, T.D. )

    1991-01-01

    Computer simulations are compared with measurements of the three-dimensional, unsteady scavenging flows of a motored two-stroke engine. Laser Doppler velocimetry measurements were made on a modified Suzuki DT-85 ported engine. Calculations were performed using KIVA-3, a computer program that efficiently solves the intake and exhaust port flows along with those in the cylinder. Measured and computed cylinder pressures and velocities are compared. Pressures agree well over the cycle as do the velocities at the intake ports. In-cylinder velocities differ in detail, but the tumbling motion in the cylinder is well replicated in vertical plane passing through the cylinder axis. 20 refs., 7 figs., 3 tabs.

  7. User's manual for master: Modeling of aerodynamic surfaces by 3-dimensional explicit representation. [input to three dimensional computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Gibson, S. G.

    1983-01-01

    A system of computer programs was developed to model general three dimensional surfaces. Surfaces are modeled as sets of parametric bicubic patches. There are also capabilities to transform coordinates, to compute mesh/surface intersection normals, and to format input data for a transonic potential flow analysis. A graphical display of surface models and intersection normals is available. There are additional capabilities to regulate point spacing on input curves and to compute surface/surface intersection curves. Input and output data formats are described; detailed suggestions are given for user input. Instructions for execution are given, and examples are shown.

  8. Semi-automatic computer construction of three-dimensional shapes for the finite element method.

    PubMed

    Aharon, S; Bercovier, M

    1993-12-01

    Precise estimation of spatio-temporal distribution of ions (or other constitutives) in three-dimensional geometrical configuration plays a major role in biology. Since a direct experimental information regarding the free intracellular Ca2+ spatio-temporal distribution is not available to date, mathematical models have been developed. Most of the existing models are based on the classical numerical method of finite-difference (FD). Using this method one is limited when dealing with complicated geometry, general boundary conditions and variable or non-linear material properties. These difficulties are easily solved when the finite-element-method (FEM) is employed. The first step in the implementation of the FEM procedure is the mesh generation which is the single most tedious, time consuming task and vulnerable to mistake. In order to overcome these limitations we developed a new interface called AUTOMESH. This tool is used as a preprocessor program which generates two- and three-dimensional meshes for some known and often-used shapes in neurobiology. AUTOMESH creates an appropriate mesh by using the mesh generator commercial tool of FIDAP.

  9. Three-dimensional imaging of drill core samples using synchrotron computed microtomography. Progress report, Year two

    SciTech Connect

    Lindquist, B.; Lee, S.

    1994-05-01

    Fundamental theories of rock structure are limited by the absence of high resolution, pore level, three dimensional images which could be used for statistical analysis. The ability to produce such images in a non-destructive manner would also allow for repeated measurements of dynamic processes such as fluid motion which could be correlated to the medium properties. One aspect of this funded work is the production of cross sectional images of rock, drill core samples with one micron resolution. This work is being done by Keith Jones and Per Spanne of Brookhaven National Laboratory using beam lines X-17 and X-26 of the National Synchrotron Light Source. Jones`s annual report will provide a description of the progress in this area. The second aspect of this work is the geometrical and statistical analysis of the pore structure of the three dimensional images provided. This aspect is being carried out at SUNY-Stony Brook; we report here on the progress that has been accomplished to date. Year one I progress was discussed fully in the previous progress report (DOE/ER/14261-1). Year one effort focused on the problem of voxel-by-voxel pore/grain identification of the tomographic images (image filtering), and on analysis of the filtered images via 2-point correlation structure.

  10. Computational modeling of phonatory dynamics in a tubular three-dimensional model of the human larynx

    PubMed Central

    Xue, Q.; Mittal, R.; Zheng, X.; Bielamowicz, S.

    2012-01-01

    Simulation of the phonatory flow-structure interaction has been conducted in a three-dimensional, tubular shaped laryngeal model that has been designed with a high level of realism with respect to the human laryngeal anatomy. A non-linear spring-based contact force model is also implemented for the purpose of representing contact in more general conditions, especially those associated with three-dimensional modeling of phonation in the presence of vocal fold pathologies. The model is used to study the effects of a moderate (20%) vocal-fold tension imbalance on the phonatory dynamics. The characteristic features of phonation for normal as well as tension-imbalanced vocal folds, such as glottal waveform, glottal jet evolution, mucosal wave-type vocal-fold motion, modal entrainment, and asymmetric glottal jet deflection have been discussed in detail and compared to established data. It is found that while a moderate level of tension asymmetry does not change the vibratory dynamics significantly, it can potentially lead to measurable deterioration in voice quality. PMID:22978889

  11. Advances in three-dimensional integral imaging: sensing, display, and applications [Invited].

    PubMed

    Xiao, Xiao; Javidi, Bahram; Martinez-Corral, Manuel; Stern, Adrian

    2013-02-01

    Three-dimensional (3D) sensing and imaging technologies have been extensively researched for many applications in the fields of entertainment, medicine, robotics, manufacturing, industrial inspection, security, surveillance, and defense due to their diverse and significant benefits. Integral imaging is a passive multiperspective imaging technique, which records multiple two-dimensional images of a scene from different perspectives. Unlike holography, it can capture a scene such as outdoor events with incoherent or ambient light. Integral imaging can display a true 3D color image with full parallax and continuous viewing angles by incoherent light; thus it does not suffer from speckle degradation. Because of its unique properties, integral imaging has been revived over the past decade or so as a promising approach for massive 3D commercialization. A series of key articles on this topic have appeared in the OSA journals, including Applied Optics. Thus, it is fitting that this Commemorative Review presents an overview of literature on physical principles and applications of integral imaging. Several data capture configurations, reconstruction, and display methods are overviewed. In addition, applications including 3D underwater imaging, 3D imaging in photon-starved environments, 3D tracking of occluded objects, 3D optical microscopy, and 3D polarimetric imaging are reviewed. PMID:23385893

  12. Hierarchically designed three-dimensional macro/mesoporous carbon frameworks for advanced electrochemical capacitance storage.

    PubMed

    Yang, Yanbing; Li, Peixu; Wu, Shiting; Li, Xinyang; Shi, Enzheng; Shen, Qicang; Wu, Dehai; Xu, Wenjing; Cao, Anyuan; Yuan, Quan

    2015-04-13

    Mesoporous carbon (m-C) has potential applications as porous electrodes for electrochemical energy storage, but its applications have been severely limited by the inherent fragility and low electrical conductivity. A rational strategy is presented to construct m-C into hierarchical porous structures with high flexibility by using a carbon nanotube (CNT) sponge as a three-dimensional template, and grafting Pt nanoparticles at the m-C surface. This method involves several controllable steps including solution deposition of a mesoporous silica (m-SiO2 ) layer onto CNTs, chemical vapor deposition of acetylene, and etching of m-SiO2 , resulting in a CNT@m-C core-shell or a CNT@m-C@Pt core-shell hybrid structure after Pt adsorption. The underlying CNT network provides a robust yet flexible support and a high electrical conductivity, whereas the m-C provides large surface area, and the Pt nanoparticles improves interfacial electron and ion diffusion. Consequently, specific capacitances of 203 and 311 F g(-1) have been achieved in these CNT@m-C and CNT@m-C@Pt sponges as supercapacitor electrodes, respectively, which can retain 96 % of original capacitance under large degree compression. PMID:25752493

  13. Computed myography: three-dimensional reconstruction of motor functions from surface EMG data

    NASA Astrophysics Data System (ADS)

    van den Doel, Kees; Ascher, Uri M.; Pai, Dinesh K.

    2008-12-01

    We describe a methodology called computed myography to qualitatively and quantitatively determine the activation level of individual muscles by voltage measurements from an array of voltage sensors on the skin surface. A finite element model for electrostatics simulation is constructed from morphometric data. For the inverse problem, we utilize a generalized Tikhonov regularization. This imposes smoothness on the reconstructed sources inside the muscles and suppresses sources outside the muscles using a penalty term. Results from experiments with simulated and human data are presented for activation reconstructions of three muscles in the upper arm (biceps brachii, bracialis and triceps). This approach potentially offers a new clinical tool to sensitively assess muscle function in patients suffering from neurological disorders (e.g., spinal cord injury), and could more accurately guide advances in the evaluation of specific rehabilitation training regimens.

  14. SEISMIC SIMULATIONS USING PARALLEL COMPUTING AND THREE-DIMENSIONAL EARTH MODELS TO IMPROVE NUCLEAR EXPLOSION PHENOMENOLOGY AND MONITORING

    SciTech Connect

    Rodgers, A; Matzel, E; Pasyanos, M; Petersson, A; Sjogreen, B; Bono, C; Vorobiev, O; Antoun, T; Walter, W; Myers, S; Lomov, I

    2008-07-07

    The development of accurate numerical methods to simulate wave propagation in three-dimensional (3D) earth models and advances in computational power offer exciting possibilities for modeling the motions excited by underground nuclear explosions. This presentation will describe recent work to use new numerical techniques and parallel computing to model earthquakes and underground explosions to improve understanding of the wave excitation at the source and path-propagation effects. Firstly, we are using the spectral element method (SEM, SPECFEM3D code of Komatitsch and Tromp, 2002) to model earthquakes and explosions at regional distances using available 3D models. SPECFEM3D simulates anelastic wave propagation in fully 3D earth models in spherical geometry with the ability to account for free surface topography, anisotropy, ellipticity, rotation and gravity. Results show in many cases that 3D models are able to reproduce features of the observed seismograms that arise from path-propagation effects (e.g. enhanced surface wave dispersion, refraction, amplitude variations from focusing and defocusing, tangential component energy from isotropic sources). We are currently investigating the ability of different 3D models to predict path-specific seismograms as a function of frequency. A number of models developed using a variety of methodologies are available for testing. These include the WENA/Unified model of Eurasia (e.g. Pasyanos et al 2004), the global CUB 2.0 model (Shapiro and Ritzwoller, 2002), the partitioned waveform model for the Mediterranean (van der Lee et al., 2007) and stochastic models of the Yellow Sea Korean Peninsula region (Pasyanos et al., 2006). Secondly, we are extending our Cartesian anelastic finite difference code (WPP of Nilsson et al., 2007) to model the effects of free-surface topography. WPP models anelastic wave propagation in fully 3D earth models using mesh refinement to increase computational speed and improve memory efficiency. Thirdly

  15. Toward Improved Nuclear Explosion Monitoring With Complete Waveform Simulations Using Three-Dimensional Models and Parallel Computing

    NASA Astrophysics Data System (ADS)

    Vorobiev, O.; Antoun, T.; Rodgers, A.; Matzel, E.; Myers, S.; Walter, W.; Petersson, A.; Bono, C.; Sjogreen, B.

    2008-12-01

    Next generation methods for lowering seismic monitoring thresholds and reducing uncertainties will likely rely on complete waveform simulations using three-dimensional (3D) earth models. Recent advances in numerical methods for both non-linear (shock wave) and linear (anelastic, seismic wave) propagation, improved 3D models and the steady growth of parallel computing promise to improve the accuracy and efficiency of explosion simulations. These methods implemented in new computer codes can advance physics-based understanding of nuclear explosions as well as the propagation effects caused by path-dependent earth structure. This presentation will summarize new 3D modeling capabilities developed to improve understanding of the seismic waves emerging from an explosion. Specifically we are working in three thrust areas: 1) computation of regional distance intermediate-period (50-10 seconds) synthetic seismograms in 3D earth models to assess the ability of these models to predict observed seismograms from well-characterized events; 2) coupling of non-linear hydrodynamic simulations of explosion shock waves with an anelastic finite difference code for modeling the dependence of seismic wave observables on explosion emplacement conditions and near-source heterogeneity; and 3) implementation of surface topography in our anelastic finite difference code to include scattering and mode-conversion due to a non-planar free surface. Current 3D continental-to-global scale seismic models represent long-wavelength (greater than 100 km) heterogeneity. We are investigating the efficacy of current 3D models to predict complete intermediate (50- 10 seconds) waveforms for well-characterized events (mostly earthquakes) using the spectral element code, SPECFEM3D. Intermediate period seismograms for crustal events at regional distance are strongly impacted by path propagation effects due to laterally variable crustal and upper mantle structure. We are also modeling shock wave propagation

  16. Three-dimensional dynamics of scientific balloon systems in response to sudden gust loadings. [including a computer program user manual

    NASA Technical Reports Server (NTRS)

    Dorsey, D. R., Jr.

    1975-01-01

    A mathematical model was developed of the three-dimensional dynamics of a high-altitude scientific research balloon system perturbed from its equilibrium configuration by an arbitrary gust loading. The platform is modelled as a system of four coupled pendula, and the equations of motion were developed in the Lagrangian formalism assuming a small-angle approximation. Three-dimensional pendulation, torsion, and precessional motion due to Coriolis forces are considered. Aerodynamic and viscous damping effects on the pendulatory and torsional motions are included. A general model of the gust field incident upon the balloon system was developed. The digital computer simulation program is described, and a guide to its use is given.

  17. Computation of three-dimensional temperature distribution in diode-pumped alkali vapor amplifiers

    NASA Astrophysics Data System (ADS)

    Shen, Binglin; Xu, Xingqi; Xia, Chunsheng; Pan, Bailiang

    2016-06-01

    Combining the kinetic and fluid dynamic processes in static and flowing-gas diode-pumped alkali vapor amplifiers, a comprehensive physical model with a cyclic iterative approach for calculating the three-dimensional temperature distribution of the vapor cell is established. Taking into account heat generation, thermal conductivity and convection, the excitation of the alkali atoms to high electronic levels, and their losses due to ionization in the gain medium, the thermal features and output characteristics have been simultaneously obtained. The results are in good agreement with those of the measurement in a static rubidium vapor amplifier. Influences of gas velocity on radial and axial temperature profiles are simulated and analyzed. The results have demonstrated that thermal problems in gaseous gain medium can be significantly reduced by flowing the gain medium with sufficiently high velocity.

  18. Development Of A Three-Dimensional Circuit Integration Technology And Computer Architecture

    NASA Astrophysics Data System (ADS)

    Etchells, R. D.; Grinberg, J.; Nudd, G. R.

    1981-12-01

    This paper is the first of a series 1,2,3 describing a range of efforts at Hughes Research Laboratories, which are collectively referred to as "Three-Dimensional Microelectronics." The technology being developed is a combination of a unique circuit fabrication/packaging technology and a novel processing architecture. The packaging technology greatly reduces the parasitic impedances associated with signal-routing in complex VLSI structures, while simultaneously allowing circuit densities orders of magnitude higher than the current state-of-the-art. When combined with the 3-D processor architecture, the resulting machine exhibits a one- to two-order of magnitude simultaneous improvement over current state-of-the-art machines in the three areas of processing speed, power consumption, and physical volume. The 3-D architecture is essentially that commonly referred to as a "cellular array", with the ultimate implementation having as many as 512 x 512 processors working in parallel. The three-dimensional nature of the assembled machine arises from the fact that the chips containing the active circuitry of the processor are stacked on top of each other. In this structure, electrical signals are passed vertically through the chips via thermomigrated aluminum feedthroughs. Signals are passed between adjacent chips by micro-interconnects. This discussion presents a broad view of the total effort, as well as a more detailed treatment of the fabrication and packaging technologies themselves. The results of performance simulations of the completed 3-D processor executing a variety of algorithms are also presented. Of particular pertinence to the interests of the focal-plane array community is the simulation of the UNICORNS nonuniformity correction algorithms as executed by the 3-D architecture.

  19. Relationship between morphological characteristics of hyoid bone and mandible in Japanese cadavers using three-dimensional computed tomography.

    PubMed

    Ichijo, Yoshifumi; Takahashi, Yusuke; Tsuchiya, Mahito; Marushita, Yoichi; Sato, Toshio; Sugawara, Hitoshi; Hayashi, Shogo; Itoh, Masahiro; Takahashi, Tsuneo

    2016-09-01

    The aim of this study is to obtain a quantitative anatomical description of the hyoid bone and mandible using three-dimensional computed tomography. Hyoid bones were obtained from a total of 101 cadavers varying in age from 67 to 102 years. The percentage of symmetrical U-type and asymmetrical-type hyoid bones was low compared with symmetrical V type (14.9, 15.8, and 69.3 %, respectively), and no significant sex difference was observed. We found bilateral nonfusion in cadavers of advanced age at a rate of 22.7 % and bilateral complete fusion at a rate of 51.5 %. There were significant differences in metric variables (length and width) between males and females, but no significant differences in width among the different fusion types. There was no significant interaction effect of sex and degree of fusion. Strong significant associations were observed between size (length and width) of the hyoid bone and mandible in the nonfusion group, while the complete fusion group revealed a moderate correlation. We also investigated the hypothesis that the junction between the hyoid body and greater horn plays an important role in the movement of bones that have not yet ossified. However, no statistical difference was observed in the width between the two greater horns. The degree of fusion of the greater horn with the hyoid body may also affect relations of interdependencies between the hyoid bone and mandible, an important component to consider when assessing risk factors in the development of masticatory and swallowing function.

  20. A Computational and Experimental Investigation of a Three-Dimensional Hypersonic Scramjet Inlet Flow Field. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Holland, Scott Douglas

    1991-01-01

    A combined computational and experimental parametric study of the internal aerodynamics of a generic three dimensional sidewall compression scramjet inlet configuration was performed. The study was designed to demonstrate the utility of computational fluid dynamics as a design tool in hypersonic inlet flow fields, to provide a detailed account of the nature and structure of the internal flow interactions, and to provide a comprehensive surface property and flow field database to determine the effects of contraction ratio, cowl position, and Reynolds number on the performance of a hypersonic scramjet inlet configuration.

  1. The solution of the three-dimensional viscous-compressible Navier-Stokes equations on a vector computer

    NASA Technical Reports Server (NTRS)

    Smith, R. E.; Pitts, J. I.

    1979-01-01

    The development of a vectorized computer code for the solution of the three-dimensional viscous-compressible Navier-Stokes equations is described. The code is applied on the CDC STAR-100 vector computer which is capable of achieving high result rates when a high degree of parallelism is present in the computations. The computational technique is an explicit time-split MacCormack predictor-corrector algorithm. Since a large volume of data is processed and virtual memory utilized, a data management scheme based on interleaving is used. The program has been applied to obtain the solution of the laminar supersonic flow about a family of three-dimensional corners. The equations of motion are expressed in a generalized form relative to a uniform rectangular computational domain. The metric coefficient and boundary conditions must be supplied for the corresponding physical domain. For calculations with 30,000 grid points, a computational rate of 0.00015 seconds per grid point per time step is observed.

  2. Using High Resolution Computed Tomography to Visualize the Three Dimensional Structure and Function of Plant Vasculature

    PubMed Central

    McElrone, Andrew J.; Choat, Brendan; Parkinson, Dilworth Y.; MacDowell, Alastair A.; Brodersen, Craig R.

    2013-01-01

    High resolution x-ray computed tomography (HRCT) is a non-destructive diagnostic imaging technique with sub-micron resolution capability that is now being used to evaluate the structure and function of plant xylem network in three dimensions (3D) (e.g. Brodersen et al. 2010; 2011; 2012a,b). HRCT imaging is based on the same principles as medical CT systems, but a high intensity synchrotron x-ray source results in higher spatial resolution and decreased image acquisition time. Here, we demonstrate in detail how synchrotron-based HRCT (performed at the Advanced Light Source-LBNL Berkeley, CA, USA) in combination with Avizo software (VSG Inc., Burlington, MA, USA) is being used to explore plant xylem in excised tissue and living plants. This new imaging tool allows users to move beyond traditional static, 2D light or electron micrographs and study samples using virtual serial sections in any plane. An infinite number of slices in any orientation can be made on the same sample, a feature that is physically impossible using traditional microscopy methods. Results demonstrate that HRCT can be applied to both herbaceous and woody plant species, and a range of plant organs (i.e. leaves, petioles, stems, trunks, roots). Figures presented here help demonstrate both a range of representative plant vascular anatomy and the type of detail extracted from HRCT datasets, including scans for coast redwood (Sequoia sempervirens), walnut (Juglans spp.), oak (Quercus spp.), and maple (Acer spp.) tree saplings to sunflowers (Helianthus annuus), grapevines (Vitis spp.), and ferns (Pteridium aquilinum and Woodwardia fimbriata). Excised and dried samples from woody species are easiest to scan and typically yield the best images. However, recent improvements (i.e. more rapid scans and sample stabilization) have made it possible to use this visualization technique on green tissues (e.g. petioles) and in living plants. On occasion some shrinkage of hydrated green plant tissues will cause

  3. Comparison of Experimental Data and Computations Fluid Dynamics Analysis for a Three Dimensional Linear Plug Nozzle

    NASA Technical Reports Server (NTRS)

    Ruf, J. H.; Hagemann, G.; Immich, H.

    2003-01-01

    A three dimensional linear plug nozzle of area ratio 12.79 was designed by EADS Space Transportation (former Astrium Space Infrastructure). The nozzle was tested within the German National Technology Program 'LION' in a cold air wind tunnel by TU Dresden. The experimental hardware and test conditions are described. Experimental data was obtained for the nozzle without plug side wall fences at a nozzle pressure ratio of 116 and then with plug side wall fences at NPR 110. Schlieren images were recorded and axial profiles of plug wall static pressures were measured at several spanwise locations and on the plug base. Detailed CFD analysis was performed for these nozzle configurations at NPR 116 by NASA MSFC. The CFD exhibits good agreement with the experimental data. A detailed comparison of the CFD results and the experimental plug wall pressure data are given. Comparisons are made for both the without and with plug side wall fence configurations. Numerical results for density gradient are compared to experimental Schlieren images. Experimental nozzle thrust efficiencies are calculated based on the CFD results. The CFD results are used to illustrate the plug nozzle fluid dynamics. The effect of the plug side wall is emphasized.

  4. Application and Quantitative Validation of Computer-Automated Three-Dimensional Counting of Cell Nuclei

    NASA Astrophysics Data System (ADS)

    Shain, William; Kayali, Soraya; Szarowski, Donald; Davis-Cox, Margaret; Ancin, Hakan; Bhattacharjya, Anoop K.; Roysam, Badrinath; Turner, James N.

    1999-03-01

    This study provides a quantitative validation of qualitative automated three-dimensional (3-D) analysis methods reported earlier. It demonstrates the applicability and quantitative accuracy of our method to detect, characterize, and count Feulgen stained cell nuclei in two tissues (hippocampus and testes). A laser-scanned confocal light microscope was used to record 3-D images i which our algorithms automatically identified individual nuclei from the optical sections given an estimate of minimum nuclear size. The hippocampal data sets were also manually counted independently by five trained observers using the STERECON 3-D image reconstruction system. The automated and manual counts were compared. A nucleus-by-nucleus comparison of the manual and automated counts verified that the automated analysis was accurate and reproducible, and permitted additional quantitative analyses not available from manual methods. The algorithms also identified subpopulations of nuclei within the hippocampal samples, and haploid and diploid nuclei in the testes. Our methods were shown to be repeatable, accurate, and more consistent than manual counting.

  5. Computational studies of x-ray scattering from three-dimensionally-aligned asymmetric-top molecules

    SciTech Connect

    Pabst, Stefan; Ho, Phay J.; Santra, Robin

    2010-04-15

    We theoretically and numerically analyze x-ray scattering from asymmetric-top molecules three-dimensionally aligned using elliptically polarized laser light. A rigid-rotor model is assumed. The principal axes of the polarizability tensor are assumed to coincide with the principal axes of the moment of inertia tensor. Several symmetries in the Hamiltonian are identified and exploited to enhance the efficiency of solving the time-dependent Schroedinger equation for each rotational state initially populated in a thermal ensemble. Using a phase-retrieval algorithm, the feasibility of structure reconstruction from a quasiadiabatically aligned sample is illustrated for the organic molecule naphthalene. The spatial resolution achievable strongly depends on the laser parameters, the initial rotational temperature, and the x-ray pulse duration. We demonstrate that for a laser peak intensity of 5 TW/cm{sup 2}, a laser pulse duration of 100 ps, a rotational temperature of 10 mK, and an x-ray pulse duration of 1 ps, the molecular structure may be probed at a resolution of 1 A ring .

  6. Computational studies of x-ray scattering from three-dimensionally-aligned asymmetric-top molecules.

    SciTech Connect

    Pabst, S.; Ho, P.; Santra, R.

    2010-01-01

    We theoretically and numerically analyze x-ray scattering from asymmetric-top molecules three-dimensionally aligned using elliptically polarized laser light. A rigid-rotor model is assumed. The principal axes of the polarizability tensor are assumed to coincide with the principal axes of the moment of inertia tensor. Several symmetries in the Hamiltonian are identified and exploited to enhance the efficiency of solving the time-dependent Schroedinger equation for each rotational state initially populated in a thermal ensemble. Using a phase-retrieval algorithm, the feasibility of structure reconstruction from a quasiadiabatically aligned sample is illustrated for the organic molecule naphthalene. The spatial resolution achievable strongly depends on the laser parameters, the initial rotational temperature, and the x-ray pulse duration. We demonstrate that for a laser peak intensity of 5 TW/cm{sup 2}, a laser pulse duration of 100 ps, a rotational temperature of 10 mK, and an x-ray pulse duration of 1 ps, the molecular structure may be probed at a resolution of 1 {angstrom}.

  7. Parallel computation in a three-dimensional elastic-plastic finite-element analysis

    NASA Technical Reports Server (NTRS)

    Shivakumar, K. N.; Bigelow, C. A.; Newman, J. C., Jr.

    1992-01-01

    A CRAY parallel processing technique called autotasking was implemented in a three-dimensional elasto-plastic finite-element code. The technique was evaluated on two CRAY supercomputers, a CRAY 2 and a CRAY Y-MP. Autotasking was implemented in all major portions of the code, except the matrix equations solver. Compiler directives alone were not able to properly multitask the code; user-inserted directives were required to achieve better performance. It was noted that the connect time, rather than wall-clock time, was more appropriate to determine speedup in multiuser environments. For a typical example problem, a speedup of 2.1 (1.8 when the solution time was included) was achieved in a dedicated environment and 1.7 (1.6 with solution time) in a multiuser environment on a four-processor CRAY 2 supercomputer. The speedup on a three-processor CRAY Y-MP was about 2.4 (2.0 with solution time) in a multiuser environment.

  8. Lens-free computational imaging of capillary morphogenesis within three-dimensional substrates

    NASA Astrophysics Data System (ADS)

    Weidling, John; Isikman, Serhan O.; Greenbaum, Alon; Ozcan, Aydogan; Botvinick, Elliot

    2012-12-01

    Endothelial cells cultured in three-dimensional (3-D) extracellular matrices spontaneously form microvessels in response to soluble and matrix-bound factors. Such cultures are common for the study of angiogenesis and may find widespread use in drug discovery. Vascular networks are imaged over weeks to measure the distribution of vessel morphogenic parameters. Measurements require micron-scale spatial resolution, which for light microscopy comes at the cost of limited field-of-view (FOV) and shallow depth-of-focus (DOF). Small FOVs and DOFs necessitate lateral and axial mechanical scanning, thus limiting imaging throughput. We present a lens-free holographic on-chip microscopy technique to rapidly image microvessels within a Petri dish over a large volume without any mechanical scanning. This on-chip method uses partially coherent illumination and a CMOS sensor to record in-line holographic images of the sample. For digital reconstruction of the measured holograms, we implement a multiheight phase recovery method to obtain phase images of capillary morphogenesis over a large FOV (24 mm2) with ˜1.5 μm spatial resolution. On average, measured capillary length in our method was within approximately 2% of lengths measured using a 10× microscope objective. These results suggest lens-free on-chip imaging is a useful toolset for high-throughput monitoring and quantitative analysis of microvascular 3-D networks.

  9. Three-dimensional photovoltaics

    NASA Astrophysics Data System (ADS)

    Myers, Bryan; Bernardi, Marco; Grossman, Jeffrey C.

    2010-02-01

    The concept of three-dimensional (3D) photovoltaics is explored computationally using a genetic algorithm to optimize the energy production in a day for arbitrarily shaped 3D solar cells confined to a given area footprint and total volume. Our simulations demonstrate that the performance of 3D photovoltaic structures scales linearly with height, leading to volumetric energy conversion, and provides power fairly evenly throughout the day. Furthermore, we show that optimal 3D structures are not simple box-like shapes, and that design attributes such as reflectivity could be optimized using three-dimensionality.

  10. Three-dimensional photovoltaics

    NASA Astrophysics Data System (ADS)

    Myers, Bryan; Bernardi, Marco; Grossman, Jeffrey C.

    2010-03-01

    The concept of three-dimensional (3D) photovoltaics is explored computationally using a genetic algorithm to optimize the energy production in a day for arbitrarily shaped 3D solar cells confined to a given area footprint and total volume. Our simulations demonstrate that the performance of 3D photovoltaic structures scales linearly with height, leading to volumetric energy conversion, and provides power fairly evenly throughout the day. Furthermore, we show that optimal 3D shapes are not simple box-like shapes, and that design attributes such as reflectivity can be optimized in new ways using three-dimensionality.

  11. Three-dimensional segmentation of pulmonary artery volume from thoracic computed tomography imaging

    NASA Astrophysics Data System (ADS)

    Lindenmaier, Tamas J.; Sheikh, Khadija; Bluemke, Emma; Gyacskov, Igor; Mura, Marco; Licskai, Christopher; Mielniczuk, Lisa; Fenster, Aaron; Cunningham, Ian A.; Parraga, Grace

    2015-03-01

    Chronic obstructive pulmonary disease (COPD), is a major contributor to hospitalization and healthcare costs in North America. While the hallmark of COPD is airflow limitation, it is also associated with abnormalities of the cardiovascular system. Enlargement of the pulmonary artery (PA) is a morphological marker of pulmonary hypertension, and was previously shown to predict acute exacerbations using a one-dimensional diameter measurement of the main PA. We hypothesized that a three-dimensional (3D) quantification of PA size would be more sensitive than 1D methods and encompass morphological changes along the entire central pulmonary artery. Hence, we developed a 3D measurement of the main (MPA), left (LPA) and right (RPA) pulmonary arteries as well as total PA volume (TPAV) from thoracic CT images. This approach incorporates segmentation of pulmonary vessels in cross-section for the MPA, LPA and RPA to provide an estimate of their volumes. Three observers performed five repeated measurements for 15 ex-smokers with ≥10 pack-years, and randomly identified from a larger dataset of 199 patients. There was a strong agreement (r2=0.76) for PA volume and PA diameter measurements, which was used as a gold standard. Observer measurements were strongly correlated and coefficients of variation for observer 1 (MPA:2%, LPA:3%, RPA:2%, TPA:2%) were not significantly different from observer 2 and 3 results. In conclusion, we generated manual 3D pulmonary artery volume measurements from thoracic CT images that can be performed with high reproducibility. Future work will involve automation for implementation in clinical workflows.

  12. Innervation pattern of the suprascapular nerve within supraspinatus: a three-dimensional computer modeling study.

    PubMed

    Hermenegildo, J A; Roberts, S L; Kim, S Y

    2014-05-01

    The relationship between the innervation pattern of the suprascapular nerve (SSN) and the muscle architecture of supraspinatus has not been thoroughly investigated. The supraspinatus is composed of two architecturally distinct regions: anterior and posterior. Each of these regions is further subdivided into three parts: superficial, middle and deep. The purpose of this study was to investigate the course of the SSN throughout the volume of supraspinatus and to relate the intramuscular branches to the distinct regions and parts of the supraspinatus. The SSN was dissected in thirty formalin embalmed cadaveric specimens and digitized throughout the muscle volume in six of those specimens. The digitized data were modeled using Autodesk(®) Maya(®) 2011. The three-dimensional (3D) models were used to relate the intramuscular innervation pattern to the muscle and tendon architecture defined by Kim et al. (2007, Clin Anat 20:648-655). The SSN bifurcated into two main trunks: medial and lateral. All parts of the anterior region were predominantly innervated by the medial trunk and its proximal and medial branches, whereas all parts of the posterior region predominantly by the lateral trunk and its posterolateral and/or posteromedial branches. The posterior region also received innervation from the proximal branch of the medial trunk in half of the specimens. These findings provide evidence that the anterior and posterior regions are distinct with respect to their innervation. The 3D map of the innervation pattern will aid in planning future clinical studies investigating muscle activation patterns and provide insight into possible injury of the nerve with supraspinatus pathology and surgical techniques. PMID:23649406

  13. Innervation pattern of the suprascapular nerve within supraspinatus: a three-dimensional computer modeling study.

    PubMed

    Hermenegildo, J A; Roberts, S L; Kim, S Y

    2014-05-01

    The relationship between the innervation pattern of the suprascapular nerve (SSN) and the muscle architecture of supraspinatus has not been thoroughly investigated. The supraspinatus is composed of two architecturally distinct regions: anterior and posterior. Each of these regions is further subdivided into three parts: superficial, middle and deep. The purpose of this study was to investigate the course of the SSN throughout the volume of supraspinatus and to relate the intramuscular branches to the distinct regions and parts of the supraspinatus. The SSN was dissected in thirty formalin embalmed cadaveric specimens and digitized throughout the muscle volume in six of those specimens. The digitized data were modeled using Autodesk(®) Maya(®) 2011. The three-dimensional (3D) models were used to relate the intramuscular innervation pattern to the muscle and tendon architecture defined by Kim et al. (2007, Clin Anat 20:648-655). The SSN bifurcated into two main trunks: medial and lateral. All parts of the anterior region were predominantly innervated by the medial trunk and its proximal and medial branches, whereas all parts of the posterior region predominantly by the lateral trunk and its posterolateral and/or posteromedial branches. The posterior region also received innervation from the proximal branch of the medial trunk in half of the specimens. These findings provide evidence that the anterior and posterior regions are distinct with respect to their innervation. The 3D map of the innervation pattern will aid in planning future clinical studies investigating muscle activation patterns and provide insight into possible injury of the nerve with supraspinatus pathology and surgical techniques.

  14. High spatial resolution three-dimensional mapping of vegetation spectral dynamics using computer vision and hobbyist unmanned aerial vehicles

    NASA Astrophysics Data System (ADS)

    Dandois, J. P.; Ellis, E. C.

    2013-12-01

    High spatial resolution three-dimensional (3D) measurements of vegetation by remote sensing are advancing ecological research and environmental management. However, substantial economic and logistical costs limit this application, especially for observing phenological dynamics in ecosystem structure and spectral traits. Here we demonstrate a new aerial remote sensing system enabling routine and inexpensive aerial 3D measurements of canopy structure and spectral attributes, with properties similar to those of LIDAR, but with RGB (red-green-blue) spectral attributes for each point, enabling high frequency observations within a single growing season. This 'Ecosynth' methodology applies photogrammetric ''Structure from Motion'' computer vision algorithms to large sets of highly overlapping low altitude (< 130 m) aerial photographs acquired using off-the-shelf digital cameras mounted on an inexpensive (< USD$4000), lightweight (< 2 kg), hobbyist-grade unmanned aerial system (UAS). Ecosynth 3D point clouds with densities of 30 - 67 points m-2 were produced using commercial computer vision software from digital photographs acquired repeatedly by UAS over three 6.25 ha (250 m x 250 m) Temperate Deciduous forest sites in Maryland USA. Ecosynth canopy height maps (CHMs) were strong predictors of field-measured tree heights (R2 0.63 to 0.84) and were highly correlated with a LIDAR CHM (R 0.87) acquired 4 days earlier, though Ecosynth-based estimates of aboveground biomass densities included significant errors (31 - 36% of field-based estimates). Repeated scanning of a 0.25 ha forested area at six different times across a 16 month period revealed ecologically significant dynamics in canopy color at different heights and a structural shift upward in canopy density, as demonstrated by changes in vertical height profiles of point density and relative RGB brightness. Changes in canopy relative greenness were highly correlated (R2 = 0.88) with MODIS NDVI time series for the same

  15. Advanced computing

    NASA Technical Reports Server (NTRS)

    1991-01-01

    Advanced concepts in hardware, software and algorithms are being pursued for application in next generation space computers and for ground based analysis of space data. The research program focuses on massively parallel computation and neural networks, as well as optical processing and optical networking which are discussed under photonics. Also included are theoretical programs in neural and nonlinear science, and device development for magnetic and ferroelectric memories.

  16. Development of a Computer-Aided-Design-Based Geometry and Mesh Movement Algorithm for Three-Dimensional Aerodynamic Shape Optimization

    NASA Astrophysics Data System (ADS)

    Truong, Anh Hoang

    This thesis focuses on the development of a Computer-Aided-Design (CAD)-based geometry parameterization method and a corresponding surface mesh movement algorithm suitable for three-dimensional aerodynamic shape optimization. The geometry parameterization method includes a geometry control tool to aid in the construction and manipulation of a CAD geometry through a vendor-neutral application interface, CAPRI. It automates the tedious part of the construction phase involving data entry and provides intuitive and effective design variables that allow for both the flexibility and the precision required to control the movement of the geometry. The surface mesh movement algorithm, on the other hand, transforms an initial structured surface mesh to fit the new geometry using a discrete representation of the new CAD surface provided by CAPRI. Using a unique mapping procedure, the algorithm not only preserves the characteristics of the original surface mesh, but also guarantees that the new mesh points are on the CAD geometry. The new surface mesh is then smoothed in the parametric space before it is transformed back into three-dimensional space. The procedure is efficient in that all the processing is done in the parametric space, incurring minimal computational cost. The geometry parameterization and mesh movement tools are integrated into a three-dimensional shape optimization framework, with a linear-elasticity volume-mesh movement algorithm, a Newton-Krylov flow solver for the Euler equations, and a gradient-based optimizer. The validity and accuracy of the CAD-based optimization algorithm are demonstrated through a number of verification and optimization cases.

  17. Advances in three-dimensional rapid prototyping of microfluidic devices for biological applications.

    PubMed

    O'Neill, P F; Ben Azouz, A; Vázquez, M; Liu, J; Marczak, S; Slouka, Z; Chang, H C; Diamond, D; Brabazon, D

    2014-09-01

    The capability of 3D printing technologies for direct production of complex 3D structures in a single step has recently attracted an ever increasing interest within the field of microfluidics. Recently, ultrafast lasers have also allowed developing new methods for production of internal microfluidic channels within the bulk of glass and polymer materials by direct internal 3D laser writing. This review critically summarizes the latest advances in the production of microfluidic 3D structures by using 3D printing technologies and direct internal 3D laser writing fabrication methods. Current applications of these rapid prototyped microfluidic platforms in biology will be also discussed. These include imaging of cells and living organisms, electrochemical detection of viruses and neurotransmitters, and studies in drug transport and induced-release of adenosine triphosphate from erythrocytes.

  18. Interplay of three-dimensional profile change and CD variation in 193-nm advanced binary photomasks

    NASA Astrophysics Data System (ADS)

    Lin, Yun-Yue; Su, Sean; Hsush, Wen-Chang; Lien, Ta-Cheng; Chen, Jia-Jen; Lee, Shin-Chang; Yen, Anthony

    2012-06-01

    In this study, the relationship between the depth profile of features and critical dimension (CD) deviation on MoSi binary photomasks is comprehensively investigated using 3D atomic force microscopy (3D-AFM) and aerial image metrology system (AIMS). Detailed profile description based on various surface analysis techniques, was performed to reconstruct the profile at various stages of the mask fabrication process. It is found that profile change and sidewall byproduct formation are strongly correlated with the etching environment, wet cleaning, and post-treatment. These process-induced profile changes subsequently lead to wafer CD change which can be verified by deviation in AIMS and CDSEM measurements. Visualization of these 3D profile and morphology change clearly reveals that etching gas control forms an outer layer, to enhance etch selectivity, film strength, and immunity to the mask cleaning process. Our finding provides a direction for optimizing advanced photomask materials and processing.

  19. Solving Navier-Stokes Equations with Advanced Turbulence Models on Three-Dimensional Unstructured Grids

    NASA Technical Reports Server (NTRS)

    Wang, Qun-Zhen; Massey, Steven J.; Abdol-Hamid, Khaled S.; Frink, Neal T.

    1999-01-01

    USM3D is a widely-used unstructured flow solver for simulating inviscid and viscous flows over complex geometries. The current version (version 5.0) of USM3D, however, does not have advanced turbulence models to accurately simulate complicated flows. We have implemented two modified versions of the original Jones and Launder k-epsilon two-equation turbulence model and the Girimaji algebraic Reynolds stress model in USM3D. Tests have been conducted for two flat plate boundary layer cases, a RAE2822 airfoil and an ONERA M6 wing. The results are compared with those of empirical formulae, theoretical results and the existing Spalart-Allmaras one-equation model.

  20. Advances in three-dimensional rapid prototyping of microfluidic devices for biological applications

    PubMed Central

    O'Neill, P. F.; Ben Azouz, A.; Vázquez, M.; Liu, J.; Marczak, S.; Slouka, Z.; Chang, H. C.; Diamond, D.; Brabazon, D.

    2014-01-01

    The capability of 3D printing technologies for direct production of complex 3D structures in a single step has recently attracted an ever increasing interest within the field of microfluidics. Recently, ultrafast lasers have also allowed developing new methods for production of internal microfluidic channels within the bulk of glass and polymer materials by direct internal 3D laser writing. This review critically summarizes the latest advances in the production of microfluidic 3D structures by using 3D printing technologies and direct internal 3D laser writing fabrication methods. Current applications of these rapid prototyped microfluidic platforms in biology will be also discussed. These include imaging of cells and living organisms, electrochemical detection of viruses and neurotransmitters, and studies in drug transport and induced-release of adenosine triphosphate from erythrocytes. PMID:25538804

  1. An Elasticity-Based Mesh Scheme Applied to the Computation of Unsteady Three-Dimensional Spoiler and Aeroelastic Problems

    NASA Technical Reports Server (NTRS)

    Bartels, Robert E.

    1999-01-01

    This paper presents a modification of the spring analogy scheme which uses axial linear spring stiffness with selective spring stiffening/relaxation. An alternate approach to solving the geometric conservation law is taken which eliminates the need for storage of metric Jacobians at previous time steps. Efficiency and verification are illustrated with several unsteady 2-D airfoil Euler computations. The method is next applied to the computation of the turbulent flow about a 2-D airfoil and wing with two and three- dimensional moving spoiler surfaces, and the results compared with Benchmark Active Controls Technology (BACT) experimental data. The aeroelastic response at low dynamic pressure of an airfoil to a single large scale oscillation of a spoiler surface is computed. This study confirms that it is possible to achieve accurate solutions with a very large time step for aeroelastic problems using the fluid solver and aeroelastic integrator as discussed in this paper.

  2. Use of Multiple GPUs to Speedup the Execution of a Three-Dimensional Computational Model of the Innate Immune System

    NASA Astrophysics Data System (ADS)

    Xavier, M. P.; do Nascimento, T. M.; dos Santos, R. W.; Lobosco, M.

    2014-03-01

    The development of computational systems that mimics the physiological response of organs or even the entire body is a complex task. One of the issues that makes this task extremely complex is the huge computational resources needed to execute the simulations. For this reason, the use of parallel computing is mandatory. In this work, we focus on the simulation of temporal and spatial behaviour of some human innate immune system cells and molecules in a small three-dimensional section of a tissue. To perform this simulation, we use multiple Graphics Processing Units (GPUs) in a shared-memory environment. Despite of high initialization and communication costs imposed by the use of GPUs, the techniques used to implement the HIS simulator have shown to be very effective to achieve this purpose.

  3. Computer-Generated, Three-Dimensional Character Animation: A Report and Analysis.

    ERIC Educational Resources Information Center

    Kingsbury, Douglas Lee

    This master's thesis details the experience gathered in the production "Snoot and Muttly," a short character animation with 3-D computer generated images, and provides an analysis of the computer-generated 3-D character animation system capabilities. Descriptions are provided of the animation environment at the Ohio State University Computer…

  4. Three-Dimensional Imaging and Image Displays: Surgical Application of Advanced Technologies.

    PubMed

    Satava

    1996-09-01

    One of the cornerstones of modern technology that was ushered in by laparoscopic surgery is the use of the video image. The importance of this "virtual representation" of the patient goes well beyond the application to laparoscopic surgery, and lies at the very heart of the revolution of surgery into the Information Age. Real objects, organs and patients can be represented as 2 and 3-dimensional computer generated images and viewed upon displays beyond the simple video monitor which permit a level of clinical practice not possible on the actual patients. These fundamental concepts that form the foundation of the revolution in surgery are placed in a framework for the future of surgery, and illustrate how their implementation can dramatically improve patient care.

  5. Multi-Scale Computational Model of Three-Dimensional Hemodynamics within a Deformable Full-Body Arterial Network

    PubMed Central

    Xiao, Nan; Humphrey, Jay D.; Figueroa, C. Alberto

    2012-01-01

    In this article, we present a computational multi-scale model of fully three-dimensional and unsteady hemodynamics within the primary large arteries in the human. Computed tomography image data from two different patients were used to reconstruct a nearly complete network of the major arteries from head to foot. A linearized coupled-momentum method for fluid-structure-interaction was used to describe vessel wall deformability and a multi-domain method for outflow boundary condition specification was used to account for the distal circulation. We demonstrated that physiologically realistic results can be obtained from the model by comparing simulated quantities such as regional blood flow, pressure and flow waveforms, and pulse wave velocities to known values in the literature. We also simulated the impact of age-related arterial stiffening on wave propagation phenomena by progressively increasing the stiffness of the central arteries and found that the predicted effects on pressure amplification and pulse wave velocity are in agreement with findings in the clinical literature. This work demonstrates the feasibility of three-dimensional techniques for simulating hemodynamics in a full-body compliant arterial network. PMID:23729840

  6. Multi-scale computational model of three-dimensional hemodynamics within a deformable full-body arterial network

    SciTech Connect

    Xiao, Nan; Humphrey, Jay D.; Figueroa, C. Alberto

    2013-07-01

    In this article, we present a computational multi-scale model of fully three-dimensional and unsteady hemodynamics within the primary large arteries in the human. Computed tomography image data from two different patients were used to reconstruct a nearly complete network of the major arteries from head to foot. A linearized coupled-momentum method for fluid–structure-interaction was used to describe vessel wall deformability and a multi-domain method for outflow boundary condition specification was used to account for the distal circulation. We demonstrated that physiologically realistic results can be obtained from the model by comparing simulated quantities such as regional blood flow, pressure and flow waveforms, and pulse wave velocities to known values in the literature. We also simulated the impact of age-related arterial stiffening on wave propagation phenomena by progressively increasing the stiffness of the central arteries and found that the predicted effects on pressure amplification and pulse wave velocity are in agreement with findings in the clinical literature. This work demonstrates the feasibility of three-dimensional techniques for simulating hemodynamics in a full-body compliant arterial network.

  7. COMMIX-PPC: A three-dimensional transient multicomponent computer program for analyzing performance of power plant condensers

    SciTech Connect

    Chien, T.H.; Domanus, H.M.; Sha, W.T.

    1993-02-01

    The COMMIX-PPC computer pregrain is an extended and improved version of earlier COMMIX codes and is specifically designed for evaluating the thermal performance of power plant condensers. The COMMIX codes are general-purpose computer programs for the analysis of fluid flow and heat transfer in complex Industrial systems. In COMMIX-PPC, two major features have been added to previously published COMMIX codes. One feature is the incorporation of one-dimensional equations of conservation of mass, momentum, and energy on the tube stile and the proper accounting for the thermal interaction between shell and tube side through the porous-medium approach. The other added feature is the extension of the three-dimensional conservation equations for shell-side flow to treat the flow of a multicomponent medium. COMMIX-PPC is designed to perform steady-state and transient. Three-dimensional analysis of fluid flow with heat transfer tn a power plant condenser. However, the code is designed in a generalized fashion so that, with some modification, it can be used to analyze processes in any heat exchanger or other single-phase engineering applications. Volume I (Equations and Numerics) of this report describes in detail the basic equations, formulation, solution procedures, and models for a phenomena. Volume II (User's Guide and Manual) contains the input instruction, flow charts, sample problems, and descriptions of available options and boundary conditions.

  8. COMMIX-PPC: A three-dimensional transient multicomponent computer program for analyzing performance of power plant condensers

    SciTech Connect

    Chien, T.H.; Domanus, H.M.; Sha, W.T.

    1993-02-01

    The COMMIX-PPC computer program is an extended and improved version of earlier COMMIX codes and is specifically designed for evaluating the thermal performance of power plant condensers. The COMMIX codes are general-purpose computer programs for the analysis of fluid flow and heat transfer in complex industrial systems. In COMMIX-PPC, two major features have been added to previously published COMMIX codes. One feature is the incorporation of one-dimensional conservation of mass. momentum, and energy equations on the tube side, and the proper accounting for the thermal interaction between shell and tube side through the porous medium approach. The other added feature is the extension of the three-dimensional conservation equations for shell-side flow to treat the flow of a multicomponent medium. COMMIX-PPC is designed to perform steady-state and transient three-dimensional analysis of fluid flow with heat transfer in a power plant condenser. However, the code is designed in a generalized fashion so that, with some modification. it can be used to analyze processes in any heat exchanger or other single-phase engineering applications.

  9. Fluid dynamics of flapping aquatic flight in the bird wrasse: three-dimensional unsteady computations with fin deformation.

    PubMed

    Ramamurti, Ravi; Sandberg, William C; Löhner, Rainald; Walker, Jeffrey A; Westneat, Mark W

    2002-10-01

    Many fishes that swim with the paired pectoral fins use fin-stroke parameters that produce thrust force from lift in a mechanism of underwater flight. These locomotor mechanisms are of interest to behavioral biologists, biomechanics researchers and engineers. In the present study, we performed the first three-dimensional unsteady computations of fish swimming with oscillating and deforming fins. The objective of these computations was to investigate the fluid dynamics of force production associated with the flapping aquatic flight of the bird wrasse Gomphosus varius. For this computational work, we used the geometry of the wrasse and its pectoral fin, and previously measured fin kinematics, as the starting points for computational investigation of three-dimensional (3-D) unsteady fluid dynamics. We performed a 3-D steady computation and a complete set of 3-D quasisteady computations for a range of pectoral fin positions and surface velocities. An unstructured, grid-based, unsteady Navier-Stokes solver with automatic adaptive remeshing was then used to compute the unsteady flow about the wrasse through several complete cycles of pectoral fin oscillation. The shape deformation of the pectoral fin throughout the oscillation was taken from the experimental kinematics. The pressure distribution on the body of the bird wrasse and its pectoral fins was computed and integrated to give body and fin forces which were decomposed into lift and thrust. The velocity field variation on the surface of the wrasse body, on the pectoral fins and in the near-wake was computed throughout the swimming cycle. We compared our computational results for the steady, quasi-steady and unsteady cases with the experimental data on axial and vertical acceleration obtained from the pectoral fin kinematics experiments. These comparisons show that steady state computations are incapable of describing the fluid dynamics of flapping fins. Quasi-steady state computations, with correct incorporation of

  10. Fluid dynamics of flapping aquatic flight in the bird wrasse: three-dimensional unsteady computations with fin deformation.

    PubMed

    Ramamurti, Ravi; Sandberg, William C; Löhner, Rainald; Walker, Jeffrey A; Westneat, Mark W

    2002-10-01

    Many fishes that swim with the paired pectoral fins use fin-stroke parameters that produce thrust force from lift in a mechanism of underwater flight. These locomotor mechanisms are of interest to behavioral biologists, biomechanics researchers and engineers. In the present study, we performed the first three-dimensional unsteady computations of fish swimming with oscillating and deforming fins. The objective of these computations was to investigate the fluid dynamics of force production associated with the flapping aquatic flight of the bird wrasse Gomphosus varius. For this computational work, we used the geometry of the wrasse and its pectoral fin, and previously measured fin kinematics, as the starting points for computational investigation of three-dimensional (3-D) unsteady fluid dynamics. We performed a 3-D steady computation and a complete set of 3-D quasisteady computations for a range of pectoral fin positions and surface velocities. An unstructured, grid-based, unsteady Navier-Stokes solver with automatic adaptive remeshing was then used to compute the unsteady flow about the wrasse through several complete cycles of pectoral fin oscillation. The shape deformation of the pectoral fin throughout the oscillation was taken from the experimental kinematics. The pressure distribution on the body of the bird wrasse and its pectoral fins was computed and integrated to give body and fin forces which were decomposed into lift and thrust. The velocity field variation on the surface of the wrasse body, on the pectoral fins and in the near-wake was computed throughout the swimming cycle. We compared our computational results for the steady, quasi-steady and unsteady cases with the experimental data on axial and vertical acceleration obtained from the pectoral fin kinematics experiments. These comparisons show that steady state computations are incapable of describing the fluid dynamics of flapping fins. Quasi-steady state computations, with correct incorporation of

  11. Performing three-dimensional neutral particle transport calculations on tera scale computers

    SciTech Connect

    Woodward, C S; Brown, P N; Chang, B; Dorr, M R; Hanebutte, U R

    1999-01-12

    A scalable, parallel code system to perform neutral particle transport calculations in three dimensions is presented. To utilize the hyper-cluster architecture of emerging tera scale computers, the parallel code successfully combines the MPI message passing and paradigms. The code's capabilities are demonstrated by a shielding calculation containing over 14 billion unknowns. This calculation was accomplished on the IBM SP ''ASCI-Blue-Pacific computer located at Lawrence Livermore National Laboratory (LLNL).

  12. Fast parallel algorithm for three-dimensional distance-driven model in iterative computed tomography reconstruction

    NASA Astrophysics Data System (ADS)

    Chen, Jian-Lin; Li, Lei; Wang, Lin-Yuan; Cai, Ai-Long; Xi, Xiao-Qi; Zhang, Han-Ming; Li, Jian-Xin; Yan, Bin

    2015-02-01

    The projection matrix model is used to describe the physical relationship between reconstructed object and projection. Such a model has a strong influence on projection and backprojection, two vital operations in iterative computed tomographic reconstruction. The distance-driven model (DDM) is a state-of-the-art technology that simulates forward and back projections. This model has a low computational complexity and a relatively high spatial resolution; however, it includes only a few methods in a parallel operation with a matched model scheme. This study introduces a fast and parallelizable algorithm to improve the traditional DDM for computing the parallel projection and backprojection operations. Our proposed model has been implemented on a GPU (graphic processing unit) platform and has achieved satisfactory computational efficiency with no approximation. The runtime for the projection and backprojection operations with our model is approximately 4.5 s and 10.5 s per loop, respectively, with an image size of 256×256×256 and 360 projections with a size of 512×512. We compare several general algorithms that have been proposed for maximizing GPU efficiency by using the unmatched projection/backprojection models in a parallel computation. The imaging resolution is not sacrificed and remains accurate during computed tomographic reconstruction. Projected supported by the National High Technology Research and Development Program of China (Grant No. 2012AA011603) and the National Natural Science Foundation of China (Grant No. 61372172).

  13. Computational algorithms for increased control of depth-viewing volume for stereo three-dimensional graphic displays

    NASA Technical Reports Server (NTRS)

    Williams, Steven P.; Parrish, Russell V.

    1992-01-01

    Three-dimensional pictorial displays incorporating depth cues by means of stereopsis offer a potential means of presenting information in a natural way to enhance situational awareness and improve operator performance. Conventional computational techniques rely on asymptotic projection transformations and symmetric clipping to produce the stereo display. Implementation of two new computational techniques, as asymmetric clipping algorithm and piecewise linear projection transformation, provides the display designer with more control and better utilization of the effective depth-viewing volume to allow full exploitation of stereopsis cuing. Asymmetric clipping increases the perceived field of view (FOV) for the stereopsis region. The total horizontal FOV provided by the asymmetric clipping algorithm is greater throughout the scene viewing envelope than that of the symmetric algorithm. The new piecewise linear projection transformation allows the designer to creatively partition the depth-viewing volume, with freedom to place depth cuing at the various scene distances at which emphasis is desired.

  14. Terahertz wave three-dimensional computed tomography based on injection-seeded terahertz wave parametric emitter and detector.

    PubMed

    Tripathi, Saroj R; Sugiyama, Yuya; Murate, Kosuke; Imayama, Kazuki; Kawase, Kodo

    2016-03-21

    We demonstrate a high dynamic range, three-dimensional (3-D) terahertz (THz) wave computed tomography system in which frequency tunable, Fourier transform-limited, high-power THz waves are emitted by an injection-seeded parametric source and ultrasensitive detection of THz waves is accomplished by heterodyne detection. This system covers the frequency range of 0.95 to 2.7 THz and has a maximum dynamic range in excess of nine orders of magnitude, enabling the acquisition of high-resolution 3-D tomographic images of samples with strong THz absorption. As an illustration, we obtained 3-D computed tomographic images of a pencil and a plastic product with an internal defect that demonstrates the potential applications of our imaging system in non-destructive testing and evaluation of industrial products. PMID:27136834

  15. Computer Simulation Study of Human Locomotion with a Three-Dimensional Entire-Body Neuro-Musculo-Skeletal Model

    NASA Astrophysics Data System (ADS)

    Hase, Kazunori; Obinata, Goro

    It is essential for the biomechanical study of human walking motion to consider not only in vivo mechanical load and energy efficiency but also aspects of motor control such as walking stability. In this study, walking stability was investigated using a three-dimensional entire-body neuro-musculo-skeletal model in the computer simulation. In the computational experiments, imaginary constraints, such as no muscular system, were set in the neuro-musculo-skeletal model to investigate their influence on walking stability. The neuronal parameters were adjusted using numerical search techniques in order to adapt walking patterns to constraints on the neuro-musculo-skeletal system. Simulation results revealed that the model of the normal neuro-musculo-skeletal system yielded a higher stability than the imaginary models. Unstable walking by a model with a time delay in the neuronal system suggested significant unknown mechanisms which stabilized walking patterns that have been neglected in previous studies.

  16. Three-Dimensional Computer Animated Graphics: A Tool for Spatial Skill Instruction.

    ERIC Educational Resources Information Center

    Zavotka, Susan Lee

    1987-01-01

    Describes study of home economics students at Ohio State University that investigated whether computer animated graphics that replicate mental images of rotation and dimensional transformation would be useful in the development of spatial skills. Orthographic drawings are described, and results for treatment and control groups are analyzed. (29…

  17. Three-dimensional Computational Fluid Dynamics Investigation of a Spinning Helicopter Slung Load

    NASA Technical Reports Server (NTRS)

    Theorn, J. N.; Duque, E. P. N.; Cicolani, L.; Halsey, R.

    2005-01-01

    After performing steady-state Computational Fluid Dynamics (CFD) calculations using OVERFLOW to validate the CFD method against static wind-tunnel data of a box-shaped cargo container, the same setup was used to investigate unsteady flow with a moving body. Results were compared to flight test data previously collected in which the container is spinning.

  18. Computational methods for a three-dimensional model of the petroleum-discovery process

    USGS Publications Warehouse

    Schuenemeyer, J.H.; Bawiec, W.J.; Drew, L.J.

    1980-01-01

    A discovery-process model devised by Drew, Schuenemeyer, and Root can be used to predict the amount of petroleum to be discovered in a basin from some future level of exploratory effort: the predictions are based on historical drilling and discovery data. Because marginal costs of discovery and production are a function of field size, the model can be used to make estimates of future discoveries within deposit size classes. The modeling approach is a geometric one in which the area searched is a function of the size and shape of the targets being sought. A high correlation is assumed between the surface-projection area of the fields and the volume of petroleum. To predict how much oil remains to be found, the area searched must be computed, and the basin size and discovery efficiency must be estimated. The basin is assumed to be explored randomly rather than by pattern drilling. The model may be used to compute independent estimates of future oil at different depth intervals for a play involving multiple producing horizons. We have written FORTRAN computer programs that are used with Drew, Schuenemeyer, and Root's model to merge the discovery and drilling information and perform the necessary computations to estimate undiscovered petroleum. These program may be modified easily for the estimation of remaining quantities of commodities other than petroleum. ?? 1980.

  19. THREE-DIMENSIONAL COMPUTER MODELING OF THE HUMAN UPPER RESPIRATORY TRACT

    EPA Science Inventory

    ABSTRACT
    Computer simulations of airflow and particle transport phenomena within the human respiratory system have important applications to aerosol therapy (e.g., the targeted delivery of inhaled drugs) and inhalation toxicology (e.g., the risk assessment of air pollutants). ...

  20. Three-Dimensional Effects on Multi-Element High Lift Computations

    NASA Technical Reports Server (NTRS)

    Rumsey, Christopher L.; Lee-Rausch, Elizabeth M.; Watson, Ralph D.

    2002-01-01

    In an effort to discover the causes for disagreement between previous 2-D computations and nominally 2-D experiment for flow over the 3-clement McDonnell Douglas 30P-30N airfoil configuration at high lift, a combined experimental/CFD investigation is described. The experiment explores several different side-wall boundary layer control venting patterns, document's venting mass flow rates, and looks at corner surface flow patterns. The experimental angle of attack at maximum lift is found to be sensitive to the side wall venting pattern: a particular pattern increases the angle of attack at maximum lift by at least 2 deg. A significant amount of spanwise pressure variation is present at angles of attack near maximum lift. A CFD study using 3-D structured-grid computations, which includes the modeling of side-wall venting, is employed to investigate 3-D effects of the flow. Side-wall suction strength is found to affect the angle at which maximum lift is predicted. Maximum lift in the CFD is shown to be limited by the growth of all off-body corner flow vortex and consequent increase in spanwise pressure variation and decrease in circulation. The 3-D computations with and without wall venting predict similar trends to experiment at low angles of attack, but either stall too earl or else overpredict lift levels near maximum lift by as much as 5%. Unstructured-grid computations demonstrate that mounting brackets lower die the levels near maximum lift conditions.

  1. Three-dimensional prediction of the human eyeball and canthi for craniofacial reconstruction using cone-beam computed tomography.

    PubMed

    Kim, Sang-Rok; Lee, Kyung-Min; Cho, Jin-Hyoung; Hwang, Hyeon-Shik

    2016-04-01

    An anatomical relationship between the hard and soft tissues of the face is mandatory for facial reconstruction. The purpose of this study was to investigate the positions of the eyeball and canthi three-dimensionally from the relationships between the facial hard and soft tissues using cone-beam computed tomography (CBCT). CBCT scan data of 100 living subjects were used to obtain the measurements of facial hard and soft tissues. Stepwise multiple regression analyses were carried out using the hard tissue measurements in the orbit, nasal bone, nasal cavity and maxillary canine to predict the most probable positions of the eyeball and canthi within the orbit. Orbital width, orbital height, and orbital depth were strong predictors of the eyeball and canthi position. Intercanine width was also a predictor of the mediolateral position of the eyeball. Statistically significant regression models for the positions of the eyeball and canthi could be derived from the measurements of orbit and maxillary canine. These results suggest that CBCT data can be useful in predicting the positions of the eyeball and canthi three-dimensionally.

  2. A three-dimensional grid generation method for gas-turbine combustor flow computations

    NASA Astrophysics Data System (ADS)

    Shyy, Wei; Braaten, Mark E.; Sober, Janet S.

    1987-02-01

    A special-purpose code suitable for generating a curvilinear nonorthogonal grid system for gas-turbine combustor flow computations has been produced. The code is capable of handling an arbitrary number of dilution holes with any radii as well as film-cooling slots on the top and bottom surfaces. A zonal approach has been developed to handle the fast length scale variations imposed by the geometric constraints and to minimize the overall computational efforts needed to generate the grids. The code combines partial differential equation and algebraic interpolation methods to generate the grid system. The salient features of the grid characteristics are discussed. Also included are sample results of a 3-D turbulent combusting flow field calculated on the grid system produced by this methodology.

  3. Three-dimensional computer-assisted simulation combining facial skeleton with facial morphology for orthognathic surgery.

    PubMed

    Chen, L H; Chen, W H

    1999-01-01

    The purpose of this study was to use a 3-dimensional (3D) computer-aided design (CAD) simulation system to plan surgical procedures and predict postoperative changes in orthognathic surgery patients. A computer-generated imaging model was developed by combining a 3D reconstructed cephalometric skeletal image and a laser-scanned facial surface image. Moreover, postoperative data were studied and linked to the simulator model for programming and executing simulated surgical procedures. Interactive editing capabilities allow surgeons to operate CAD surgical simulation, and predicted results can be presented graphically and numerically. The results indicate that the integration of 3D images and CAD techniques have a potential for simulating surgery and providing graphic information to patients in obtaining an informed consent.

  4. Large-scale three-dimensional geothermal reservoir simulation on small computer systems

    SciTech Connect

    Antunez, E.; Moridis, G.; Pruess, K.

    1995-05-01

    The performance of TOUGH2, Lawrence Berkeley Laboratory`s general purpose simulator for mass and heat flow and transport enhanced with the addition of a set of preconditioned conjugate gradient solvers, was tested on three PCs (486-33, 486-66, Pentium-90), a MacIntosh Quadra 800, and a workstation IBM RISC 6000. A two-phase, single porosity, 3-D geothermal reservoir model with 1,411 irregular grid blocks, with production from and injection into the reservoir was used as the test model. The code modifications to TOUGH2 and its setup in each machine environment are described. Computational work per time step and CPU time requirements are reported for each of the machines used. It is concluded that the current PCs provide the best price/performance platform for running large-scale geothermal field simulations that just a few years ago could only be executed on mainframe computers and high-end workstations.

  5. Development and validation of GWHEAD, a three-dimensional groundwater head computer code

    SciTech Connect

    Beckmeyer, R.R.; Root, R.W.; Routt, K.R.

    1980-03-01

    A computer code has been developed to solve the groundwater flow equation in three dimensions. The code has finite-difference approximations solved by the strongly implicit solution procedure. Input parameters to the code include hydraulic conductivity, specific storage, porosity, accretion (recharge), and initial hydralic head. These parameters may be input as varying spatially. The hydraulic conductivity may be input as isotropic or anisotropic. The boundaries either may permit flow across them or may be impermeable. The code has been used to model leaky confined groundwater conditions and spherical flow to a continuous point sink, both of which have exact analytical solutions. The results generated by the computer code compare well with those of the analytical solutions. The code was designed to be used to model groundwater flow beneath fuel reprocessing and waste storage areas at the Savannah River Plant.

  6. Computational experience with a three-dimensional rotary engine combustion model

    NASA Technical Reports Server (NTRS)

    Raju, M. S.; Willis, E. A.

    1990-01-01

    A new computer code was developed to analyze the chemically reactive flow and spray combustion processes occurring inside a stratified-charge rotary engine. Mathematical and numerical details of the new code were recently described by the present authors. The results are presented of limited, initial computational trials as a first step in a long-term assessment/validation process. The engine configuration studied was chosen to approximate existing rotary engine flow visualization and hot firing test rigs. Typical results include: (1) pressure and temperature histories, (2) torque generated by the nonuniform pressure distribution within the chamber, (3) energy release rates, and (4) various flow-related phenomena. These are discussed and compared with other predictions reported in the literature. The adequacy or need for improvement in the spray/combustion models and the need for incorporating an appropriate turbulence model are also discussed.

  7. Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography

    PubMed Central

    Shemonski, Nathan D.; Ahn, Shawn S.; Liu, Yuan-Zhi; South, Fredrick A.; Carney, P. Scott; Boppart, Stephen A.

    2014-01-01

    Over the years, many computed optical interferometric techniques have been developed to perform high-resolution volumetric tomography. By utilizing the phase and amplitude information provided with interferometric detection, post-acquisition corrections for defocus and optical aberrations can be performed. The introduction of the phase, though, can dramatically increase the sensitivity to motion (most prominently along the optical axis). In this paper, we present two algorithms which, together, can correct for motion in all three dimensions with enough accuracy for defocus and aberration correction in computed optical interferometric tomography. The first algorithm utilizes phase differences within the acquired data to correct for motion along the optical axis. The second algorithm utilizes the addition of a speckle tracking system using temporally- and spatially-coherent illumination to measure motion orthogonal to the optical axis. The use of coherent illumination allows for high-contrast speckle patterns even when imaging apparently uniform samples or when highly aberrated beams cannot be avoided. PMID:25574426

  8. Manual of phosphoric acid fuel cell stack three-dimensional model and computer program

    NASA Technical Reports Server (NTRS)

    Lu, C. Y.; Alkasab, K. A.

    1984-01-01

    A detailed distributed mathematical model of phosphoric acid fuel cell stack have been developed, with the FORTRAN computer program, for analyzing the temperature distribution in the stack and the associated current density distribution on the cell plates. Energy, mass, and electrochemical analyses in the stack were combined to develop the model. Several reasonable assumptions were made to solve this mathematical model by means of the finite differences numerical method.

  9. Computation of the eddy-current modes of three-dimensional conducting bodies

    NASA Astrophysics Data System (ADS)

    Gabbay, Jonathan E.; Scott, Waymond R.

    2016-05-01

    Low-frequency electromagnetic induction (EMI) sensors are commonly used in subsurface detection applications because of their efficacy at detecting even small fragments of metal when they are buried near the surface. This efficacy can become a shortcoming when the detector is expected to locate specific classes of targets that are buried among metallic clutter. For these applications, broadband EMI sensors have shown considerable promise at being able to detect, classify and locate targets such as land mines, and discriminate between them and the clutter with low false-alarm rates. In such cases, where differentiating targets from clutter is a significant obstacle, detection strategies based on the discrete spectrum of relaxation frequencies (DSRF) have been shown to be highly effective. For such purposes, a dictionary of DSRF of targets of interest must be computed a priori. Several classes of targets such as sphere and rings have DSRF that can be derived analytically, however, in general, the DSRF must be computed numerically. Previously, numerical strategies have been presented for thin conducting shells and rotationaly symmetric targets. In this paper, we will present a strategy to compute the DSRF of arbitrary conducting targets using a null space free Jacobi Davidson iteration (NFJD).

  10. Application of computational fluid dynamics to three-dimensional bodies in hypersonic flow

    NASA Astrophysics Data System (ADS)

    Ryan, James Stevenson

    Hypersonic aircraft are now being designed. For that work to be completed, improved computational tools are required. The flow simulation capabilities which are needed are being sought. In order to accomplish this, features of several existing codes were combined and enhanced. The Compressible Navier-Stokes (CNS) computer code solves the thin-layer Navier-Stokes equations in three dimensions for arbitrary vehicle shapes. The solver can capture strong or weak shocks, and can model separated flow. Boundary-layer turbulence is accounted for empirically by use of the Baldwin-Lomax turbulence model. The code uses ideal gas assumptions or an equilibrium real gas model. Geometries are gridded in a zonal fashion, allowing for flexible convergence strategies and use of the best available equation set for each zone. The grid on which the computations are performed is critical to the efficient generation of accurate solutions. Some of the criteria for grid quality are discussed, and a simple method of adapting grids to supersonic flow fields is presented. The code was tested against analytical, experimental, and numerical results, and shows excellent agreement for critical quantities such as heat transfer and skin friction. The zonal approach of the code and its modular structure allow for future inclusion of internal flow options, more complex geometrical models, nonequilibrium air chemistry, combustion chemistry, and other improvements.

  11. GCLgrid: A three-dimensional geographical curvilinear grid library for computational seismology

    NASA Astrophysics Data System (ADS)

    Fan, Chengliang; Pavlis, Gary L.; Tuncay, Kagan

    2006-04-01

    We developed a general library for handling a class of objects we call geographical curvilinear grids (GCLgrids). A GCLgrid is a distorted, uniform grid that is georeferenced. The GCLgrid library is implemented in an object oriented system with methods that relate points in the grid to a geographic reference frame. A simple example is a spherical shell divided along latitude, longitude, and depth, but more elaborate shapes can use the same interface. Scalar and vector fields are derived from the base grid through inheritance. Two algorithms are the core of this library. First, we use the Direction Set method to search for a location in space from a starting point. This algorithm converges reasonably fast if the grid is not extremely distorted. Second, we interpolate the grid using methods known from finite element analysis. A Jacobian matrix for an 8-node cube is computed to transform a distorted cube into a unit one. Shape functions for the standard cube are used to compute interpolation coefficients. Once the interpolation coefficients are computed, we can interpolate n-element vectors almost as quickly as scalar data. We show an application of the library to travel time table calculation at regional distances. Our table interpolator was found to be 10 times faster than one based on the tau-p method and is expected to be several orders of magnitude faster than 3D ray-tracing methods. Travel time interpolation errors are reduced significantly by tabulating delay times relative to a homogenous reference model instead of absolute times. This allows much coarser grids to be used at large scales comparing to one using total time.

  12. TEMPEST: A computer code for three-dimensional analysis of transient fluid dynamics

    SciTech Connect

    Fort, J.A.

    1995-06-01

    TEMPEST (Transient Energy Momentum and Pressure Equations Solutions in Three dimensions) is a powerful tool for solving engineering problems in nuclear energy, waste processing, chemical processing, and environmental restoration because it analyzes and illustrates 3-D time-dependent computational fluid dynamics and heat transfer analysis. It is a family of codes with two primary versions, a N- Version (available to public) and a T-Version (not currently available to public). This handout discusses its capabilities, applications, numerical algorithms, development status, and availability and assistance.

  13. Level set discrete element method for three-dimensional computations with triaxial case study

    NASA Astrophysics Data System (ADS)

    Kawamoto, Reid; Andò, Edward; Viggiani, Gioacchino; Andrade, José E.

    2016-06-01

    In this paper, we outline the level set discrete element method (LS-DEM) which is a discrete element method variant able to simulate systems of particles with arbitrary shape using level set functions as a geometric basis. This unique formulation allows seamless interfacing with level set-based characterization methods as well as computational ease in contact calculations. We then apply LS-DEM to simulate two virtual triaxial specimens generated from XRCT images of experiments and demonstrate LS-DEM's ability to quantitatively capture and predict stress-strain and volume-strain behavior observed in the experiments.

  14. Steady and unsteady three-dimensional transonic flow computations by integral equation method

    NASA Technical Reports Server (NTRS)

    Hu, Hong

    1994-01-01

    This is the final technical report of the research performed under the grant: NAG1-1170, from the National Aeronautics and Space Administration. The report consists of three parts. The first part presents the work on unsteady flows around a zero-thickness wing. The second part presents the work on steady flows around non-zero thickness wings. The third part presents the massively parallel processing implementation and performance analysis of integral equation computations. At the end of the report, publications resulting from this grant are listed and attached.

  15. Three-dimensional computer-assisted surgical simulation and intraoperative navigation in orthognathic surgery: a literature review.

    PubMed

    Lin, Hsiu-Hsia; Lo, Lun-Jou

    2015-04-01

    By incorporating three-dimensional (3D) imaging and computer-aided design and manufacturing techniques, 3D computer-assisted technology has been applied widely to provide accurate guidance for assessment and treatment planning in clinical practice. This technology has recently been used in orthognathic surgery to improve surgical planning and outcome. The modality will gradually become popular. This study reviewed the literature concerning the use of computer-assisted techniques in orthognathic surgery including surgical planning, simulation, intraoperative translation of the virtual surgery, and postoperative evaluation. A Medline, PubMed, ProQuest, and ScienceDirect search was performed to find relevant articles with regard to 3D computer-assisted orthognathic surgery in the past 10 years. A total of 460 articles were revealed, out of which 174 were publications addressed the topic of this study. The purpose of this article is to present an overview of the state-of-art methods for 3D computer-assisted technology in orthognathic surgery. From the review we can conclude that the use of computer-assisted technique in orthognathic surgery provides the benefit of optimal functional and aesthetic results, patient satisfaction, precise translation of the treatment plan, and facilitating intraoperative manipulation.

  16. Computational strategies for three-dimensional flow simulations on distributed computer systems. Ph.D. Thesis Semiannual Status Report, 15 Aug. 1993 - 15 Feb. 1994

    NASA Technical Reports Server (NTRS)

    Weed, Richard Allen; Sankar, L. N.

    1994-01-01

    An increasing amount of research activity in computational fluid dynamics has been devoted to the development of efficient algorithms for parallel computing systems. The increasing performance to price ratio of engineering workstations has led to research to development procedures for implementing a parallel computing system composed of distributed workstations. This thesis proposal outlines an ongoing research program to develop efficient strategies for performing three-dimensional flow analysis on distributed computing systems. The PVM parallel programming interface was used to modify an existing three-dimensional flow solver, the TEAM code developed by Lockheed for the Air Force, to function as a parallel flow solver on clusters of workstations. Steady flow solutions were generated for three different wing and body geometries to validate the code and evaluate code performance. The proposed research will extend the parallel code development to determine the most efficient strategies for unsteady flow simulations.

  17. GPU-accelerated model for fast, three-dimensional fluid-structure interaction computations.

    PubMed

    Nita, Cosmin; Itu, Lucian; Mihalef, Viorel; Sharma, Puneet; Rapaka, Saikiran

    2015-08-01

    In this paper we introduce a methodology for performing one-way Fluid-Structure interaction (FSI), i.e. where the motion of the wall boundaries is imposed. We use a Graphics Processing Unit (GPU) accelerated Lattice-Boltzmann Method (LBM) implementation and present an efficient workflow for embedding the moving geometry, given as a set of polygonal meshes, in the LBM computation. The proposed method is first validated in a synthetic experiment: a vessel which is periodically expanding and contracting. Next, the evaluation focuses on the 3D Peristaltic flow problem: a fluid flows inside a flexible tube, where a periodic wave-like deformation produces a fluid motion along the centerline of the tube. Different geometry configurations are used and results are compared against previously published solutions. The efficient approach leads to an average execution time of approx. one hour per computation, whereas 50% of it is required for the geometry update operations. Finally, we also analyse the effect of changing the Reynolds number on the flow streamlines: the flow regime is significantly affected by the Reynolds number. PMID:26736424

  18. Three-dimensional Computational Fluid Dynamics (CFD) modeling of dry spent nuclear fuel storage canisters

    SciTech Connect

    Lee, S.Y.

    1997-06-01

    One of the interim storage configurations being considered for aluminum-clad foreign research reactor fuel, such as the Material and Testing Reactor (MTR) design, is in a dry storage facility. To support design studies of storage options, a computational and experimental program was conducted at the Savannah River Site (SRS). The objective was to develop computational fluid dynamics (CFD) models which would be benchmarked using data obtained from a full scale heat transfer experiment conducted in the SRS Experimental Thermal Fluids Laboratory. The current work documents the CFD approach and presents comparison of results with experimental data. CFDS-FLOW3D (version 3.3) CFD code has been used to model the 3-dimensional convective velocity and temperature distributions within a single dry storage canister of MTR fuel elements. For the present analysis, the Boussinesq approximation was used for the consideration of buoyancy-driven natural convection. Comparison of the CFD code can be used to predict reasonably accurate flow and thermal behavior of a typical foreign research reactor fuel stored in a dry storage facility.

  19. Analysis of rotary engine combustion processes based on unsteady, three-dimensional computations

    NASA Technical Reports Server (NTRS)

    Raju, M. S.; Willis, E. A.

    1989-01-01

    A new computer code was developed for predicting the turbulent, and chemically reacting flows with sprays occurring inside of a stratified charge rotary engine. The solution procedure is based on an Eulerian Lagrangian approach where the unsteady, 3-D Navier-Stokes equations for a perfect gas mixture with variable properties are solved in generalized, Eulerian coordinates on a moving grid by making use of an implicit finite volume, Steger-Warming flux vector splitting scheme, and the liquid phase equations are solved in Lagrangian coordinates. Both the details of the numerical algorithm and the finite difference predictions of the combustor flow field during the opening of exhaust and/or intake, and also during fuel vaporization and combustion, are presented.

  20. Computer-assisted three-dimensional surgical planning: 3D virtual articulator: technical note.

    PubMed

    Ghanai, S; Marmulla, R; Wiechnik, J; Mühling, J; Kotrikova, B

    2010-01-01

    This study presents a computer-assisted planning system for dysgnathia treatment. It describes the process of information gathering using a virtual articulator and how the splints are constructed for orthognathic surgery. The deviation of the virtually planned splints is shown in six cases on the basis of conventionally planned cases. In all cases the plaster models were prepared and scanned using a 3D laser scanner. Successive lateral and posterior-anterior cephalometric images were used for reconstruction before surgery. By identifying specific points on the X-rays and marking them on the virtual models, it was possible to enhance the 2D images to create a realistic 3D environment and to perform virtual repositioning of the jaw. A hexapod was used to transfer the virtual planning to the real splints. Preliminary results showed that conventional repositioning could be replicated using the virtual articulator.

  1. COMMIX-SA-1: a three-dimensional thermohydrodynamic computer program for solar applications. [Heat-storage water tanks

    SciTech Connect

    Sha, W.T.; Lin, E.I.H.; Schmitt, R.C.; Liu, K.V.; Hull, J.R.; Oras, J.J. Jr.; Domanus, H.M.

    1980-11-01

    COMMIX-SA-1 is a three-dimensional, transient, single-phase, compressible-flow, component computer program for thermohydrodynamic analysis. It was developed for solar applications in general, and for analysis of thermocline storage tanks in particular. The conservation equations (in cylindrical coordinates) for mass, momentum, and energy are solved as an initial-boundary-value problem. The detailed numerical-solution procedure based on a modified ICE (Implicit Continuous-Fluid Eulerian) technique is described. A method for treating the singularity problem arising at the origin of a cylindrical-coordinate system is presented. In addition, the thermal interactions between fluid and structures (tank walls, baffles, etc.) are explicitly accounted for. Finally, the COMMIX-SA-1 code structure is delineated, and an input description and sample problems are presented.

  2. Three-dimensional evaluation of the mandibular third molars’ development in unilateral crossbite patients: A cone beam computed tomography study

    PubMed Central

    Halicioglu, Koray; Celikoglu, Mevlut; Buyuk, Suleyman Kutalmis; Sekerci, Ahmet Ercan; Ucar, Faruk Izzet; Yavuz, Ibrahim

    2014-01-01

    Objectives: The aim was to investigate mandibular third molar (3M)'s maturation in the crossbite and normal sides by two- and three-dimensional analyses using cone beam computed tomography (CBCT). Materials and Methods: A retrospective study was performed using CBCT of 25 patients (16 females and 9 males; mean age: 16.8 ± 2.9 years) with unilateral posterior crossbite. The formation stages and the volume of the mandibular 3Ms were evaluated by means of CBCT data of the patients without knowing the crossbite side of the patients. Results: Statistically no significant differences were found in the development of the 3Ms between the crossbite and the control sides, whereas the volume of 3M was found to be less in the crossbite side than in the normal side (P = 0.021). Conclusions: A volume of 3M was found to be less in the crossbite side than in the normal side. PMID:25202221

  3. Computer program for calculating full potential transonic, quasi-three-dimensional flow through a rotating turbomachinery blade row

    NASA Technical Reports Server (NTRS)

    Farrell, C. A.

    1982-01-01

    A fast, reliable computer code is described for calculating the flow field about a cascade of arbitrary two dimensional airfoils. The method approximates the three dimensional flow in a turbomachinery blade row by correcting for stream tube convergence and radius change in the throughflow direction. A fully conservative solution of the full potential equation is combined with the finite volume technique on a body-fitted periodic mesh, with an artificial density imposed in the transonic region to insure stability and the capture of shock waves. The instructions required to set up and use the code are included. The name of the code is QSONIC. A numerical example is also given to illustrate the output of the program.

  4. A finite element method to compute three-dimensional equilibrium configurations of fluid membranes: Optimal parameterization, variational formulation and applications

    NASA Astrophysics Data System (ADS)

    Rangarajan, Ramsharan; Gao, Huajian

    2015-09-01

    We introduce a finite element method to compute equilibrium configurations of fluid membranes, identified as stationary points of a curvature-dependent bending energy functional under certain geometric constraints. The reparameterization symmetries in the problem pose a challenge in designing parametric finite element methods, and existing methods commonly resort to Lagrange multipliers or penalty parameters. In contrast, we exploit these symmetries by representing solution surfaces as normal offsets of given reference surfaces and entirely bypass the need for artificial constraints. We then resort to a Galerkin finite element method to compute discrete C1 approximations of the normal offset coordinate. The variational framework presented is suitable for computing deformations of three-dimensional membranes subject to a broad range of external interactions. We provide a systematic algorithm for computing large deformations, wherein solutions at subsequent load steps are identified as perturbations of previously computed ones. We discuss the numerical implementation of the method in detail and demonstrate its optimal convergence properties using examples. We discuss applications of the method to studying adhesive interactions of fluid membranes with rigid substrates and to investigate the influence of membrane tension in tether formation.

  5. Three-dimensional localization of impacted canines and root resorption assessment using cone beam computed tomography.

    PubMed

    Almuhtaseb, Eyad; Mao, Jing; Mahony, Derek; Bader, Rawan; Zhang, Zhi-xing

    2014-06-01

    The purpose of this study was to develop a new way to localize the impacted canines from three dimensions and to investigate the root resorption of the adjacent teeth by using cone beam computed tomography (CBCT). Forty-six patients undergoing orthodontic treatments and having impacted canines in Tongji Hospital were examined. The images of CBCT scans were obtained from KaVo 3D exam vision. Angular and linear measurements of the cusp tip and root apex according to the three planes (mid-sagittal, occlusal and frontal) have been taken using the cephalometric tool of the InVivo Dental Anatomage Version 5.1.10. The measurements of the angular and linear coordinates of the maxillary and mandibular canines were obtained. Using this technique the operators could envision the location of the impacted canine according to the three clinical planes. Adjacent teeth root resorption of 28.26 % was in the upper lateral incisors while 17.39% in upper central incisors, but no lower root resorption was found in our samples. Accurate and reliable localization of the impacted canines could be obtained from the novel analysis system, which offers a better surgical and orthodontic treatment for the patients with impacted canines.

  6. Cephalometric Angular Measurements of the Mandible Using Three-Dimensional Computed Tomography Scans in Koreans

    PubMed Central

    Kim, Yong Hyun; Kang, Seok Joo

    2016-01-01

    Background We conducted this study to analyze the values of the key cephalometric angular measurements of the mandible using 3-dimensional (3D) computed tomography scans. Methods In the 106 enrolled patients, a 3D cephalometric analysis was performed to measure the angular variables of the mandible. These values were compared between the two sides and between the two sexes. Results The frontal measurements revealed that the mandibular body curve angle was larger on the left (Lt) side (right [Rt], 141.24±7.54; Lt, 142.68±6.94; P=0.002) and the gonial angle was larger on the right side (Rt, 134.37±8.44; Lt, 131.54±7.14; P<0.001). The sagittal measurements showed that the gonial angle was larger on the right side (Rt, 134.37±8.44; Lt, 131.54±7.14; P>0.05). Further, the transverse measurements revealed that the mandibular body curve angle was larger on the right side (Rt, 140.28±7.05; Lt, 137.56±6.23; P<0.001). Conclusions These results provide an average of the mandibular angular measurements for the Korean population, establishing a standard for determining surgical patient groups and outcome evaluations in the field of mandible contour surgery. PMID:26848443

  7. Consequences of fiducial marker error on three-dimensional computer animation of the temporomandibular joint

    NASA Astrophysics Data System (ADS)

    Leader, J. Ken, III; Boston, J. Robert; Rudy, Thomas E.; Greco, Carol M.; Zaki, Hussein S.

    2001-05-01

    Jaw motion has been used to diagnose jaw pain patients, and we have developed a 3D computer animation technique to study jaw motion. A customized dental clutch was worn during motion, and its consistent and rigid placement was a concern. The experimental protocol involved mandibular movements (vertical opening) and MR imaging. The clutch contained three motion markers used to collect kinematic data and four MR markers used as fiducial markers in the MR images. Fiducial marker misplacement was mimicked by analytically perturbing the position of the MR markers +/- 2, +/- 4, and +/- 6 degrees in the three anatomical planes. The percent difference between the original and perturbed MR marker position was calculated for kinematic parameters. The maximum difference across all perturbations for axial rotation, coronal rotation, sagittal rotation, axial translation, coronal translation, and sagittal translation were 176.85%, 191.84%, 0.64%, 9.76%, 80.75%, and 8.30%, respectively, for perturbing all MR markers, and 86.47%, 93.44%, 0.23%, 7.08%, 42.64%, and 13.64%, respectively, for perturbing one MR marker. The parameters representing movement in the sagittal plane, the dominant plane in vertical opening, were determined to be reasonably robust, while secondary movements in the axial and coronal planes were not considered robust.

  8. Three-dimensional assessment of bone turnover using computed microtomography and laser-scanning confocal microscopy

    NASA Astrophysics Data System (ADS)

    Prevrhal, Sven; Jiang, Yebin; Zhao, Jenny; Genant, Harry K.

    2000-06-01

    Objective: Metabolic activity in trabecular bone is an important indicator in the therapy of bone diseases like osteoporosis. It is reflected by the amount of osteoid (young, not yet mineralized bone) and young calcified tissue (YCT). Our aim was to replace standard 2D histomorphometry with a 3D approach for osteoid and YCT measurement. Measurement Methods: Excised lumbar vertebrae of 5 ovariectomized (OVX) and 5 control rats were 3D-scanned with computed micro-tomography ((mu) CT, isotropic spatial resolution 20 micrometer3) and laser scanning confocal microscopy (LSCM, 20X magnification, 1X1X2 micrometer3 spatial resolution). (mu) CT shows trabecular bone structure; LSCM shows osteoid and YCT by fluorescent light. Image Processing Methods: The fraction of bone to tissue volume (BV/TV) and the number of trabeculae (Tb.N) were calculated from globally thresholded (mu) CT images. LSCM images were enhanced using top-hat transform, globally thresholded and morphologically closed. Separate regions were labeled by volume growing. We measured feature volume to background volume ratio and number of features per unit volume. Results and Conclusions: In the specimens obtained from the OVX rats, a significant increase in the volume fractions of osteoid and YCT could be seen. The (mu) CT-LSCM approach presents a significant improvement over time-consuming, standard histomorphometry. The image processing for both modalities could be achieved automatically.

  9. Three Dimensional Compressible Turbulent Flow Computations for a Diffusing S-Duct With/Without Vortex Generators

    NASA Technical Reports Server (NTRS)

    Cho, Soo-Yong; Greber, Isaac

    1994-01-01

    Numerical investigations on a diffusing S-duct with/without vortex generators and a straight duct with vortex generators are presented. The investigation consists of solving the full three-dimensional unsteady compressible mass averaged Navier-Stokes equations. An implicit finite volume lower-upper time marching code (RPLUS3D) has been employed and modified. A three-dimensional Baldwin-Lomax turbulence model has been modified in conjunction with the flow physics. A model for the analysis of vortex generators in a fully viscous subsonic internal flow is evaluated. A vortical structure for modeling the shed vortex is used as a source term in the computation domain. The injected vortex paths in the straight duct are compared with the analysis by two kinds of prediction models. The flow structure by the vortex generators are investigated along the duct. Computed results of the flow in a circular diffusing S-duct provide an understanding of the flow structure within a typical engine inlet system. These are compared with the experimental wall static-pressure, static- and total-pressure field, and secondary velocity profiles. Additionally, boundary layer thickness, skin friction values, and velocity profiles in wall coordinates are presented. In order to investigate the effect of vortex generators, various vortex strengths are examined in this study. The total-pressure recovery and distortion coefficients are obtained at the exit of the S-duct. The numerical results clearly depict the interaction between the low velocity flow by the flow separation and the injected vortices.

  10. Comparisons of a Three-Dimensional, Full Navier Stokes Computer Model with High Mach Number Combuster Test Data

    NASA Technical Reports Server (NTRS)

    Watkins, William B.

    1990-01-01

    Comparisons between scramjet combustor data and a three-dimensional full Navier-Stokes calculation have been made to verify and substantiate computational fluid dynamics (CFD) codes and application procedures. High Mach number scramjet combustor development will rely heavily on CFD applications to provide wind tunnel-equivalent data of quality sufficient to design, build and fly hypersonic aircraft. Therefore. detailed comparisons between CFD results and test data are imperative. An experimental case is presented, for which combustor wall static pressures were measured and flow-fieid interferograms were obtained. A computer model was done of the experiment, and counterpart parameters are compared with experiment. The experiment involved a subscale combustor designed and fabricated for the National Aero-Space Plane Program, and tested in the Calspan Corporation 96" hypersonic shock tunnel. The combustor inlet ramp was inclined at a 20 angle to the shock tunnel nozzle axis, and resulting combustor entrance flow conditions simulated freestream M=10. The combustor body and cowl walls were instrumented with static pressure transducers, and the combustor lateral walls contained windows through which flowfield holographic interferograms were obtained. The CFD calculation involved a three-dimensional time-averaged full Navier-Stokes code applied to the axial flow segment containing fuel injection and combustion. The full Navier-Stokes approach allowed for mixed supersonic and subsonic flow, downstream-upstream communication in subsonic flow regions, and effects of adverse pressure gradients. The code included hydrogen-air chemistry in the combustor segment which begins near fuel injection and continues through combustor exhaust. Combustor ramp and inlet segments on the combustor lateral centerline were modelled as two dimensional. Comparisons to be shown include calculated versus measured wall static pressures as functions of axial flow coordinate, and calculated path

  11. Three-dimensional electromagnetic modeling and inversion on massively parallel computers

    SciTech Connect

    Newman, G.A.; Alumbaugh, D.L.

    1996-03-01

    This report has demonstrated techniques that can be used to construct solutions to the 3-D electromagnetic inverse problem using full wave equation modeling. To this point great progress has been made in developing an inverse solution using the method of conjugate gradients which employs a 3-D finite difference solver to construct model sensitivities and predicted data. The forward modeling code has been developed to incorporate absorbing boundary conditions for high frequency solutions (radar), as well as complex electrical properties, including electrical conductivity, dielectric permittivity and magnetic permeability. In addition both forward and inverse codes have been ported to a massively parallel computer architecture which allows for more realistic solutions that can be achieved with serial machines. While the inversion code has been demonstrated on field data collected at the Richmond field site, techniques for appraising the quality of the reconstructions still need to be developed. Here it is suggested that rather than employing direct matrix inversion to construct the model covariance matrix which would be impossible because of the size of the problem, one can linearize about the 3-D model achieved in the inverse and use Monte-Carlo simulations to construct it. Using these appraisal and construction tools, it is now necessary to demonstrate 3-D inversion for a variety of EM data sets that span the frequency range from induction sounding to radar: below 100 kHz to 100 MHz. Appraised 3-D images of the earth`s electrical properties can provide researchers opportunities to infer the flow paths, flow rates and perhaps the chemistry of fluids in geologic mediums. It also offers a means to study the frequency dependence behavior of the properties in situ. This is of significant relevance to the Department of Energy, paramount to characterizing and monitoring of environmental waste sites and oil and gas exploration.

  12. Computation of aircraft component flow fields at transonic Mach numbers using a three-dimensional Navier-Stokes algorithm

    NASA Technical Reports Server (NTRS)

    Shrewsbury, George D.; Vadyak, Joseph; Schuster, David M.; Smith, Marilyn J.

    1989-01-01

    A computer analysis was developed for calculating steady (or unsteady) three-dimensional aircraft component flow fields. This algorithm, called ENS3D, can compute the flow field for the following configurations: diffuser duct/thrust nozzle, isolated wing, isolated fuselage, wing/fuselage with or without integrated inlet and exhaust, nacelle/inlet, nacelle (fuselage) afterbody/exhaust jet, complete transport engine installation, and multicomponent configurations using zonal grid generation technique. Solutions can be obtained for subsonic, transonic, or hypersonic freestream speeds. The algorithm can solve either the Euler equations for inviscid flow, the thin shear layer Navier-Stokes equations for viscous flow, or the full Navier-Stokes equations for viscous flow. The flow field solution is determined on a body-fitted computational grid. A fully-implicit alternating direction implicit method is employed for the solution of the finite difference equations. For viscous computations, either a two layer eddy-viscosity turbulence model or the k-epsilon two equation transport model can be used to achieve mathematical closure.

  13. Two-dimensional and three-dimensional imaging of the in vivo lung: combining spiral computed tomography with multiplanar and volumetric rendering techniques.

    PubMed

    Kuhlman, J E; Ney, D R; Fishman, E K

    1994-02-01

    We applied multiplanar techniques and a modified version of our volumetric rendering program for three-dimensional imaging to single-breath hold spiral computed tomography (CT) datasets to generate two- and three-dimensional (2-D and 3-D) images of the in vivo lung. We report details of the combined 2-D/3-D spiral CT technique along with three representative cases from our initial experience.

  14. Comparison of Conventional Versus Spiral Computed Tomography with Three Dimensional Reconstruction in Chronic Otitis Media with Ossicular Chain Destruction

    PubMed Central

    Naghibi, Saeed; Seifirad, Sirous; Adami Dehkordi, Mahboobeh; Einolghozati, Sasan; Ghaffarian Eidgahi Moghadam, Nafiseh; Akhavan Rezayat, Amir; Seifirad, Soroush

    2016-01-01

    Background: Chronic otitis media (COM) can be treated with tympanoplasty with or without mastoidectomy. In patients who have undergone middle ear surgery, three-dimensional spiral computed tomography (CT) scan plays an important role in optimizing surgical planning. Objectives: This study was performed to compare the findings of three-dimensional reconstructed spiral and conventional CT scan of ossicular chain study in patients with COM. Patients and Methods: Fifty patients enrolled in the study underwent plane and three dimensional CT scan (PHILIPS-MX 8000). Ossicles changes, mastoid cavity, tympanic cavity, and presence of cholesteatoma were evaluated. Results of the two methods were then compared and interpreted by a radiologist, recorded in questionnaires, and analyzed. Logistic regression test and Kappa coefficient of agreement were used for statistical analyses. Results: Sixty two ears with COM were found in physical examination. A significant difference was observed between the findings of the two methods in ossicle erosion (11.3% in conventional CT vs. 37.1% in spiral CT, P = 0.0001), decrease of mastoid air cells (82.3% in conventional CT vs. 93.5% in spiral CT, P = 0.001), and tympanic cavity opacity (12.9% in conventional CT vs. 40.3% in spiral CT, P=0.0001). No significant difference was observed between the findings of the two methods in ossicle destruction (6.5% conventional CT vs. 56.4% in spiral CT, P = 0.125), and presence of cholesteatoma (3.2% in conventional CT vs. 42% in spiral CT, P = 0.172). In this study, spiral CT scan demonstrated ossicle dislocation in 9.6%, decrease of mastoid air cells in 4.8%, and decrease of volume in the tympanic cavity in 1.6%; whereas, none of these findings were reported in the patients' conventional CT scans. Conclusion: Spiral-CT scan is superior to conventional CT in the diagnosis of lesions in COM before operation. It can be used for detailed evaluation of ossicular chain in such patients. PMID:27127583

  15. Three-Dimensional Analysis of Voids in AM60B Magnesium Tensile Bars Using Computed Tomography Imagery

    SciTech Connect

    Waters, A M

    2001-05-01

    In an effort to increase automobile fuel efficiency as well as decrease the output of harmful greenhouse gases, the automotive industry has recently shown increased interest in cast light metals such as magnesium alloys in an effort to increase weight savings. Currently several magnesium alloys such as AZ91 and AM60B are being used in structural applications for automobiles. However, these magnesium alloys are not as well characterized as other commonly used structural metals such as aluminum. This dissertation presents a methodology to nondestructively quantify damage accumulation due to void behavior in three dimensions in die-cast magnesium AM60B tensile bars as a function of mechanical load. Computed tomography data was acquired after tensile bars were loaded up to and including failure, and analyzed to characterize void behavior as it relates to damage accumulation. Signal and image processing techniques were used along with a cluster labeling routine to nondestructively quantify damage parameters in three dimensions. Void analyses were performed including void volume distribution characterization, nearest neighbor distance calculations, shape parameters, and volumetric renderings of voids in the alloy. The processed CT data was used to generate input files for use in finite element simulations, both two- and three-dimensional. The void analyses revealed that the overwhelming source of failure in each tensile bar was a ring of porosity within each bar, possibly due to a solidification front inherent to the casting process. The measured damage parameters related to void nucleation, growth, and coalescence were shown to contribute significantly to total damage accumulation. Void volume distributions were characterized using a Weibull function, and the spatial distributions of voids were shown to be clustered. Two-dimensional finite element analyses of the tensile bars were used to fine-tune material damage models and a three-dimensional mesh of an extracted

  16. Acceleration of color computer-generated hologram from three-dimensional scenes with texture and depth information

    NASA Astrophysics Data System (ADS)

    Shimobaba, Tomoyoshi; Kakue, Takashi; Ito, Tomoyoshi

    2014-06-01

    We propose acceleration of color computer-generated holograms (CGHs) from three-dimensional (3D) scenes that are expressed as texture (RGB) and depth (D) images. These images are obtained by 3D graphics libraries and RGB-D cameras: for example, OpenGL and Kinect, respectively. We can regard them as two-dimensional (2D) cross-sectional images along the depth direction. The generation of CGHs from the 2D cross-sectional images requires multiple diffraction calculations. If we use convolution-based diffraction such as the angular spectrum method, the diffraction calculation takes a long time and requires large memory usage because the convolution diffraction calculation requires the expansion of the 2D cross-sectional images to avoid the wraparound noise. In this paper, we first describe the acceleration of the diffraction calculation using "Band-limited double-step Fresnel diffraction," which does not require the expansion. Next, we describe color CGH acceleration using color space conversion. In general, color CGHs are generated on RGB color space; however, we need to repeat the same calculation for each color component, so that the computational burden of the color CGH generation increases three-fold, compared with monochrome CGH generation. We can reduce the computational burden by using YCbCr color space because the 2D cross-sectional images on YCbCr color space can be down-sampled without the impairing of the image quality.

  17. Proteus three-dimensional Navier-Stokes computer code, version 1.0. Volume 2: User's guide

    NASA Technical Reports Server (NTRS)

    Towne, Charles E.; Schwab, John R.; Bui, Trong T.

    1993-01-01

    A computer code called Proteus 3D was developed to solve the three-dimensional, Reynolds-averaged, unsteady compressible Navier-Stokes equations in strong conservation law form. The objective in this effort was to develop a code for aerospace propulsion applications that is easy to use and easy to modify. Code readability, modularity, and documentation were emphasized. The governing equations are solved in generalized nonorthogonal body-fitted coordinates, by marching in time using a fully-coupled ADI solution procedure. The boundary conditions are treated implicitly. All terms, including the diffusion terms, are linearized using second-order Taylor series expansions. Turbulence is modeled using either an algebraic or two-equation eddy viscosity model. The thin-layer or Euler equations may also be solved. The energy equation may be eliminated by the assumption of constant total enthalpy. Explicit and implicit artificial viscosity may be used. Several time step options are available for convergence acceleration. The documentation is divided into three volumes. This User's Guide describes the program's features, the input and output, the procedure for setting up initial conditions, the computer resource requirements, the diagnostic messages that may be generated, the job control language used to run the program, and several test cases.

  18. Incorporating texture features in a computer-aided breast lesion diagnosis system for automated three-dimensional breast ultrasound

    PubMed Central

    Liu, Haixia; Tan, Tao; van Zelst, Jan; Mann, Ritse; Karssemeijer, Nico; Platel, Bram

    2014-01-01

    Abstract. We investigated the benefits of incorporating texture features into an existing computer-aided diagnosis (CAD) system for classifying benign and malignant lesions in automated three-dimensional breast ultrasound images. The existing system takes into account 11 different features, describing different lesion properties; however, it does not include texture features. In this work, we expand the system by including texture features based on local binary patterns, gray level co-occurrence matrices, and Gabor filters computed from each lesion to be diagnosed. To deal with the resulting large number of features, we proposed a combination of feature-oriented classifiers combining each group of texture features into a single likelihood, resulting in three additional features used for the final classification. The classification was performed using support vector machine classifiers, and the evaluation was done with 10-fold cross validation on a dataset containing 424 lesions (239 benign and 185 malignant lesions). We compared the classification performance of the CAD system with and without texture features. The area under the receiver operating characteristic curve increased from 0.90 to 0.91 after adding texture features (p<0.001). PMID:26158036

  19. Computer prediction of three-dimensional potential flow fields in which aircraft propellers operate. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Jumper, S. J.

    1982-01-01

    A computer program was developed to calculate the three dimensional, steady, incompressible, inviscid, irrotational flow field at the propeller plane (propeller removed) located upstream of an arbitrary airframe geometry. The program uses a horseshoe vortex of known strength to model the wing. All other airframe surfaces are modeled by a network source panels of unknown strength which is exposed to a uniform free stream and the wing-induced velocity field. By satisfying boundary conditions on each panel (the Neumann problem), relaxed boundary conditions being used on certain panels to simulate inlet inflow, the source strengths are determined. From the known source and wing vortex strengths, the resulting velocity fields on the airframe surface and at the propeller plane are obtained. All program equations are derived in detail, and a brief description of the program structure is presented. A user's manual which fully documents the program is cited. Computer predictions of the flow on the surface of a sphere and at a propeller plane upstream of the sphere are compared with the exact mathematical solutions. Agreement is good, and correct program operation is verified.

  20. Towards a fully automated computation of RG functions for the three-dimensional O(N) vector model: parametrizing amplitudes

    NASA Astrophysics Data System (ADS)

    Guida, Riccardo; Ribeca, Paolo

    2006-02-01

    Within the framework of field-theoretical description of second-order phase transitions via the three-dimensional O(N) vector model, accurate predictions for critical exponents can be obtained from (resummation of) the perturbative series of renormalization-group functions, which are in turn derived—following Parisi's approach—from the expansions of appropriate field correlators evaluated at zero external momenta. Such a technique was fully exploited 30 years ago in two seminal works of Baker, Nickel, Green and Meiron, which led to the knowledge of the β-function up to the six-loop level; they succeeded in obtaining a precise numerical evaluation of all needed Feynman amplitudes in momentum space by lowering the dimensionalities of each integration with a cleverly arranged set of computational simplifications. In fact, extending this computation is not straightforward, due both to the factorial proliferation of relevant diagrams and the increasing dimensionality of their associated integrals; in any case, this task can be reasonably carried on only in the framework of an automated environment. On the road towards the creation of such an environment, we here show how a strategy closely inspired by that of Nickel and co-workers can be stated in algorithmic form, and successfully implemented on a computer. As an application, we plot the minimized distributions of residual integrations for the sets of diagrams needed to obtain RG functions to the full seven-loop level; they represent a good evaluation of the computational effort which will be required to improve the currently available estimates of critical exponents.

  1. GRID3O: Computer program for fast generation of multilevel, three-dimensional boundary-conforming O-type computational grids

    NASA Technical Reports Server (NTRS)

    Dulikravich, D. S.

    1981-01-01

    A fast algorithm was developed for accurately generating boundary-conforming, three-dimensional, consecutively refined computational grids applicable to arbitrary wing-body and axial turbomachinery geometries. The method is based on using an analytic function to generate two-dimensional grids on a number of coaxial axisymmetric surfaces positioned between the centerbody and the outer radial boundary. These grids are of the O-type and are characterized by quasi-orthogonality, geometric periodicity, and an adequate resolution throughout the flow field. Because the built-in nonorthogonal coordinate stretching and shearing cause the grid lines leaving the blade or wing trailing edge to end at downstream infinity, the numerical treatment of the three-dimensional trailing vortex sheets is simplified.

  2. Effect of Bladder Distension on Dose Distribution of Intracavitary Brachytherapy for Cervical Cancer: Three-Dimensional Computed Tomography Plan Evaluation

    SciTech Connect

    Cengiz, Mustafa Guerdalli, Salih; Selek, Ugur; Yildiz, Ferah; Saglam, Yuecel; Ozyar, Enis; Atahan, I. Lale

    2008-02-01

    Purpose: To quantify the effect of bladder volume on the dose distribution during intracavitary brachytherapy for cervical cancer. Methods and Patients: The study was performed on 10 women with cervical cancer who underwent brachytherapy treatment. After insertion of the brachytherapy applicator, the patients were transferred to the computed tomography unit. Two sets of computed tomography slices were taken, including the pelvis, one with an empty bladder and one after the bladder was filled with saline. The target and critical organs were delineated by the radiation oncologist and checked by the expert radiologist. The radiotherapy plan was run on the Plato planning system, version 14.1, to determine the dose distributions, dose-volume histograms, and maximal dose points. The doses and organ volumes were compared with the Wilcoxon signed ranks test on a personal computer using the Statistical Package for Social Sciences, version 11.0, statistical program. Results: No significant difference regarding the dose distribution and target volumes between an empty or full bladder was observed. Bladder fullness significantly affected the dose to the small intestine, rectum, and bladder. The median of maximal doses to the small intestine was significantly greater with an empty bladder (493 vs. 284 cGy). Although dosimetry revealed lower doses for larger volumes of bladder, the median maximal dose to the bladder was significantly greater with a full bladder (993 vs. 925 cGy). The rectal doses were also affected by bladder distension. The median maximal dose was significantly lower in the distended bladder (481vs. 628 cGy). Conclusions: Bladder fullness changed the dose distributions to the bladder, rectum, and small intestine. The clinical importance of these changes is not known and an increase in the use of three-dimensional brachytherapy planning will highlight the answer to this question.

  3. Quadcopter control in three-dimensional space using a noninvasive motor imagery-based brain-computer interface

    NASA Astrophysics Data System (ADS)

    LaFleur, Karl; Cassady, Kaitlin; Doud, Alexander; Shades, Kaleb; Rogin, Eitan; He, Bin

    2013-08-01

    Objective. At the balanced intersection of human and machine adaptation is found the optimally functioning brain-computer interface (BCI). In this study, we report a novel experiment of BCI controlling a robotic quadcopter in three-dimensional (3D) physical space using noninvasive scalp electroencephalogram (EEG) in human subjects. We then quantify the performance of this system using metrics suitable for asynchronous BCI. Lastly, we examine the impact that the operation of a real world device has on subjects' control in comparison to a 2D virtual cursor task. Approach. Five human subjects were trained to modulate their sensorimotor rhythms to control an AR Drone navigating a 3D physical space. Visual feedback was provided via a forward facing camera on the hull of the drone. Main results. Individual subjects were able to accurately acquire up to 90.5% of all valid targets presented while travelling at an average straight-line speed of 0.69 m s-1. Significance. Freely exploring and interacting with the world around us is a crucial element of autonomy that is lost in the context of neurodegenerative disease. Brain-computer interfaces are systems that aim to restore or enhance a user's ability to interact with the environment via a computer and through the use of only thought. We demonstrate for the first time the ability to control a flying robot in 3D physical space using noninvasive scalp recorded EEG in humans. Our work indicates the potential of noninvasive EEG-based BCI systems for accomplish complex control in 3D physical space. The present study may serve as a framework for the investigation of multidimensional noninvasive BCI control in a physical environment using telepresence robotics.

  4. Proteus three-dimensional Navier-Stokes computer code, version 1.0. Volume 3: Programmer's reference

    NASA Technical Reports Server (NTRS)

    Towne, Charles E.; Schwab, John R.; Bui, Trong T.

    1993-01-01

    A computer code called Proteus 3D was developed to solve the three-dimensional, Reynolds-averaged, unsteady compressible Navier-Stokes equations in strong conservation law form. The objective in this effort was to develop a code for aerospace propulsion applications that is easy to use and easy to modify. Code readability, modularity, and documentation were emphasized. The governing equations are solved in generalized nonorthogonal body fitted coordinates, by marching in time using a fully-coupled ADI solution procedure. The boundary conditions are treated implicitly. All terms, including the diffusion terms, are linearized using second-order Taylor series expansions. Turbulence is modeled using either an algebraic or two-equation eddy viscosity model. The thin-layer or Euler equations may also be solved. The energy equation may be eliminated by the assumption of constant total enthalpy. Explicit and implicit artificial viscosity may be used. Several time step options are available for convergence acceleration. The documentation is divided into three volumes. The Programmer's Reference contains detailed information useful when modifying the program. The program structure, the Fortran variables stored in common blocks, and the details of each subprogram are described.

  5. Exact transparent boundary condition for the three-dimensional Schrödinger equation in a rectangular cuboid computational domain.

    PubMed

    Feshchenko, R M; Popov, A V

    2013-11-01

    We report an exact transparent boundary condition (TBC) on the surface of a rectangular cuboid for the three-dimensional (3D) time-dependent Schrödinger equation. It is obtained as a generalization of the well-known TBC for the 1D Schrödinger equation and of the exact TBC in the rectangular domain for the 3D parabolic wave equation, which we reported earlier. Like all other TBCs, it is nonlocal in time domain and relates the boundary transverse derivative of the wave function at any given time to the boundary values of the same wave function at all preceding times. We develop a discretization of this boundary condition for the implicit Crank-Nicolson finite difference scheme. Several numerical experiments demonstrate evolution of the wave function in free space as well as propagation through a number of 3D spherically symmetrical and asymmetrical barriers, and, finally, scattering off an asymmetrical 3D potential. The proposed boundary condition is simple and robust, and can be useful in computational quantum mechanics when an accurate numerical solution of the 3D Schrödinger equation is required. PMID:24329380

  6. Computational analysis of a three-dimensional High-Velocity Oxygen-Fuel (HVOF) Thermal Spray torch

    SciTech Connect

    Hassan, B.; Lopez, A.R.; Oberkampf, W.L.

    1995-07-01

    An analysis of a High-Velocity Oxygen-Fuel Thermal Spray torch is presented using computational fluid dynamics (CFD). Three-dimensional CFD results are presented for a curved aircap used for coating interior surfaces such as engine cylinder bores. The device analyzed is similar to the Metco Diamond Jet Rotating Wire torch, but wire feed is not simulated. To the authors` knowledge, these are the first published 3-D results of a thermal spray device. The feed gases are injected through an axisymmetric nozzle into the curved aircap. Argon is injected through the center of the nozzle. Pre-mixed propylene and oxygen are introduced from an annulus in the nozzle, while cooling air is injected between the nozzle and the interior wall of the aircap. The combustion process is modeled assuming instantaneous chemistry. A standard, two-equation, K-{var_epsilon} turbulence model is employed for the turbulent flow field. An implicit, iterative, finite volume numerical technique is used to solve the coupled conservation of mass, momentum, and energy equations for the gas in a sequential manner. Flow fields inside and outside the aircap are presented and discussed.

  7. Computation of the dynamic thermal properties of a three-dimensional unit cell of porous media by Brownian motion simulation

    NASA Astrophysics Data System (ADS)

    Perrot, Camille; Olny, Xavier; Panneton, Raymond; Bouchard, Richard

    2001-05-01

    Acoustic dissipation in porous media is mainly due to viscous and thermal mechanisms that occur in the pores of the microstructure. The purpose of this study is the determination of the macroscopic dynamic acoustic bulk modulus and thermal permeability of real foams from a local scale approach. To achieve this goal, two distinct steps are followed. First, the local geometry of a real foam is obtained using computed microtomography (μCT), then a periodic and regularly paving space tetrakaidecahedron cell is identified from the microstructure. Second, the heat equation is solved for the geometrical model. The paper provides a three-dimensional application of the efficient simulation technique of Brownian motion proposed by Torquato et al. for steady state diffusion-controlled problems [Appl. Phys. Lett. 55, 1847-1849 (1989)] and adapted by Lafarge [Poromechanics II, 708 (2002)] in a bi-dimensional case. The influence of the model's microstructural details (anisotropy, and struts junction and cross-section) on the macroscopic properties are studied. The predictions of the macroscopic properties using this local scale approach are then compared to experimental measurements.

  8. A Systematic Review of Protocols for the Three-Dimensional Morphologic Assessment of Abdominal Aortic Aneurysms Using Computed Tomographic Angiography

    SciTech Connect

    Ghatwary, Tamer M. H.; Patterson, Benjamin O.; Karthikesalingam, Alan; Hinchliffe, Robert J.; Loftus, Ian M.; Morgan, Robert; Thompson, Matt M.; Holt, Peter J. E.

    2013-02-15

    The morphology of infrarenal abdominal aortic aneurysms (AAAs) directly influences the perioperative outcome and long-term durability of endovascular aneurysm repair. A variety of methods have been proposed for the characterization of AAA morphology using reconstructed three-dimensional (3D) computed tomography (CT) images. At present, there is lack of consensus as to which of these methods is most applicable to clinical practice or research. The purpose of this review was to evaluate existing protocols that used 3D CT images in the assessment of various aspects of AAA morphology. An electronic search was performed, from January 1996 to the end of October 2010, using the Embase and Medline databases. The literature review conformed to PRISMA statement standards. The literature search identified 604 articles, of which 31 studies met inclusion criteria. Only 15 of 31 studies objectively assessed reproducibility. Existing published protocols were insufficient to define a single evidence-based methodology for preoperative assessment of AAA morphology. Further development and expert consensus are required to establish a standardized and validated protocol to determine precisely how morphology relates to outcomes after endovascular aneurysm repair.

  9. Three-dimensional reconstruction of medieval child mummy in Yangju, Korea, using multi-detector computed tomography.

    PubMed

    Lee, In Sun; Kim, Myeung Ju; Yoo, Dong Soo; Lee, Young Seok; Park, Sung Sil; Bok, Gi Dae; Han, Seung Ho; Chung, Yoon Hee; Chang, Byung Soo; Yi, Yang Su; Oh, Chang Seok; Shin, Dong Hoon

    2007-01-01

    Recently reported studies on the medieval mummies in Korea have been regarded as an invaluable source for studying the physical characteristics of medieval Koreans. However, since the reported medieval mummies were re-buried by their descendants without any scientific investigations, the development of a brief, non-invasive investigation technique was desperately needed among the researchers in Korea. In this regard, we tried to apply high-quality multi-detector computed tomography (MDCT) with three-dimensional (3D) reconstructions and multi-planar reformat (MPR) to investigate Korean mummies. In our study, after 1.25 or 2.5mm thin slice axial images were taken, 3D reconstruction and MPR were performed to get more accurate information about internal organs. In this trial, we successfully showed high-quality images for the brain, muscles, bones, heart and liver. During various trials for getting selected organs, we could make the 3D reconstructed images of them. Since we could show that the current MDCT technique could be useful for obtaining high-quality 3D reconstructed images of the internal organs of Korean mummies, this technique will be used in forthcoming similar cases, which could not be investigated using invasive techniques.

  10. Failure analysis of fuel cell electrodes using three-dimensional multi-length scale X-ray computed tomography

    NASA Astrophysics Data System (ADS)

    Pokhrel, A.; El Hannach, M.; Orfino, F. P.; Dutta, M.; Kjeang, E.

    2016-10-01

    X-ray computed tomography (XCT), a non-destructive technique, is proposed for three-dimensional, multi-length scale characterization of complex failure modes in fuel cell electrodes. Comparative tomography data sets are acquired for a conditioned beginning of life (BOL) and a degraded end of life (EOL) membrane electrode assembly subjected to cathode degradation by voltage cycling. Micro length scale analysis shows a five-fold increase in crack size and 57% thickness reduction in the EOL cathode catalyst layer, indicating widespread action of carbon corrosion. Complementary nano length scale analysis shows a significant reduction in porosity, increased pore size, and dramatically reduced effective diffusivity within the remaining porous structure of the catalyst layer at EOL. Collapsing of the structure is evident from the combination of thinning and reduced porosity, as uniquely determined by the multi-length scale approach. Additionally, a novel image processing based technique developed for nano scale segregation of pore, ionomer, and Pt/C dominated voxels shows an increase in ionomer volume fraction, Pt/C agglomerates, and severe carbon corrosion at the catalyst layer/membrane interface at EOL. In summary, XCT based multi-length scale analysis enables detailed information needed for comprehensive understanding of the complex failure modes observed in fuel cell electrodes.

  11. Combining micro computed tomography and three-dimensional registration to evaluate local strains in shape memory scaffolds.

    PubMed

    Bormann, Therese; Schulz, Georg; Deyhle, Hans; Beckmann, Felix; de Wild, Michael; Küffer, Jürg; Münch, Christoph; Hoffmann, Waldemar; Müller, Bert

    2014-02-01

    Appropriate mechanical stimulation of bony tissue enhances osseointegration of load-bearing implants. Uniaxial compression of porous implants locally results in tensile and compressive strains. Their experimental determination is the objective of this study. Selective laser melting is applied to produce open-porous NiTi scaffolds of cubic units. To measure displacement and strain fields within the compressed scaffold, the authors took advantage of synchrotron radiation-based micro computed tomography during temperature increase and non-rigid three-dimensional data registration. Uniaxial scaffold compression of 6% led to local compressive and tensile strains of up to 15%. The experiments validate modeling by means of the finite element method. Increasing the temperature during the tomography experiment from 15 to 37°C at a rate of 4 K h(-1), one can locally identify the phase transition from martensite to austenite. It starts at ≈ 24°C on the scaffolds bottom, proceeds up towards the top and terminates at ≈ 34°C on the periphery of the scaffold. The results allow not only design optimization of the scaffold architecture, but also estimation of maximal displacements before cracks are initiated and of optimized mechanical stimuli around porous metallic load-bearing implants within the physiological temperature range. PMID:24257506

  12. Stature estimation in Japanese cadavers based on pelvic measurements in three-dimensional multidetector computed tomographic images.

    PubMed

    Torimitsu, Suguru; Makino, Yohsuke; Saitoh, Hisako; Sakuma, Ayaka; Ishii, Namiko; Hayakawa, Mutsumi; Yajima, Daisuke; Inokuchi, Go; Motomura, Ayumi; Chiba, Fumiko; Iwase, Hirotaro

    2015-05-01

    The aim of this study was to examine the feasibility of stature estimation by measuring the pelvic bones of Japanese cadavers using three-dimensional (3D) computed tomography (CT). We assessed 3D reconstructed images of 210 Japanese subjects (108 males, 102 females) who had undergone postmortem CT between May 2011 and November 2013. We defined the linear distance from the anterosuperior margin of the left and right anterior superior iliac spines (ASIS) to the posterior margin of the left and right ischial spines as the LSS and RSS, respectively. We also defined the linear distance from the anterosuperior margin of the left and right ASIS to the anteroinferior margin of the left and right ischial tuberosities as the LST and RST, respectively. The correlation between the cadaver stature (CS) and each parameter (LSS, LST, RSS, and RST) was evaluated using Pearson product-moment correlation coefficients and regression analysis was performed for stature estimation. All four parameters correlated significantly with stature independent of sex, suggesting that they can be used as a tool for stature estimation. The LST had the closest correlation with stature in both sexes.

  13. Proteus three-dimensional Navier-Stokes computer code, version 1.0. Volume 1: Analysis description

    NASA Technical Reports Server (NTRS)

    Towne, Charles E.; Schwab, John R.; Bui, Trong T.

    1993-01-01

    A computer code called Proteus 3D has been developed to solve the three dimensional, Reynolds averaged, unsteady compressible Navier-Stokes equations in strong conservation law form. The objective in this effort has been to develop a code for aerospace propulsion applications that is easy to use and easy to modify. Code readability, modularity, and documentation have been emphasized. The governing equations are solved in generalized non-orthogonal body-fitted coordinates by marching in time using a fully-coupled ADI solution procedure. The boundary conditions are treated implicitly. All terms, including the diffusion terms, are linearized using second-order Taylor series expansions. Turbulence is modeled using either an algebraic or two-equation eddy viscosity model. The thin-layer or Euler equations may also be solved. The energy equation may be eliminated by the assumption of constant total enthalpy. Explicit and implicit artificial viscosity may be used. Several time step options are available for convergence acceleration. The documentation is divided into three volumes. This is the Analysis Description, and presents the equations and solution procedure. It describes in detail the governing equations, the turbulence model, the linearization of the equations and boundary conditions, the time and space differencing formulas, the ADI solution procedure, and the artificial viscosity models.

  14. Single Photon Emission Computed Tomography-Based Three-Dimensional Conformal Radiotherapy for Hepatocellular Carcinoma With Portal Vein Tumor Thrombus

    SciTech Connect

    Shirai, Shintaro; Sato, Morio Suwa, Kazuhiro; Kishi, Kazushi; Shimono, Chigusa; Kawai, Nobuyuki; Tanihata, Hirohiko; Minamiguchi, Hiroki; Nakai, Motoki

    2009-03-01

    Purpose: To evaluate the safety and efficacy of three-dimensional conformal radiotherapy (3D-CRT) using single photon emission computed tomography (SPECT) in unresectable hepatocellular carcinoma (HCC) with portal vein tumor thrombus (PVTT). Methods and Materials: Patients with HCC with PVTT in the first branch and/or main trunk were selected for this study. The optimal beam directions for 3D-CRT were explored using a Tc-99m-galactosyl human serum albumin SPECT image for guidance. The SPECT image was classified as either wedge type or localized type. The clinical target volume to a total dose of 45 or 50 Gy per 18-20 fractions included the main tumor and PVTT in the wedge type and PVTT alone in the localized type. Results: Twenty-six patients were enrolled: 18 with wedge type and 8 with localized type. Mean tumor size was 7.1 cm (range, 4.4-12.3 cm). Clinical target volumes of wedge type vs. localized type were 111.2 cm{sup 3} vs. 48.4 cm{sup 3} (p = 0.010), respectively. Mean dose to normal liver and mean dose to functional liver were 1185 cGy and 988 cGy (p = 0.001) in wedge type and 1046 cGy and 1043 cGy (p = 0.658) in localized type, respectively. Despite an incidence of Child-Pugh B and C of 57.7%, no patients experienced radiation-induced liver disease. The progression of PVTT was inhibited, with an incidence of 92.2%; survival rates at 1 and 2 years were 44% and 30%, respectively. Conclusion: Single photon emission computed tomography-based 3D-CRT enables irradiation of both the main tumor and PVTT with low toxicity and promising survival.

  15. Clinical application of a novel computer-aided detection system based on three-dimensional CT images on pulmonary nodule

    PubMed Central

    Zeng, Jian-Ye; Ye, Hai-Hong; Yang, Shi-Xiong; Jin, Ren-Chao; Huang, Qi-Liang; Wei, Yong-Chu; Huang, Si-Guang; Wang, Bin-Qiang; Ye, Jia-Zhou; Qin, Jian-Ying

    2015-01-01

    The aim of this study was to investigate the clinical application effects of a novel computer-aided detection (CAD) system based on three-dimensional computed tomography (CT) images on pulmonary nodule. 98 cases with pulmonary nodule (PN) in our hospital from Jun, 2009 to Jun, 2013 were analysed in this study. All cases underwent PN detection both by the simple spiral CT scan and by the computer-aided system based on 3D CT images, respectively. Postoperative pathological results were considered as the “gold standard”, for both two checking methods, the diagnostic accuracies for determining benign and malignant PN were calculated. Under simple spiral CT scan method, 63 cases is malignant, including 50 true positive cases and 13 false positive cases from the “gold standard”; 35 cases is benign, 16 true negative case and 19 false negative cases, the Sensitivity 1 (Se1)=0.725, Specificity1 (Sp1)=0.448, Agreement rate1 (Kappa 1)=0.673, J1 (Youden’s index 1)=0.173, LR(+)1=1.616, LR(-)1=0.499. Kappa 1=0.673 between the 0.4 and 0.75, has a moderate consistency. Underwent computer-aided detection (CAD) based on 3D CT method, 67cases is malignant, including 62 true positive cases and 7 false positive cases; 31 cases is benign, 24 true negative case and 7 false negative cases, Sensitivity 2 (Se2)=0.899, Specificity2 (Sp2)=0.828, Agreement rate (Kappa 2)=0.877, J2 (Youden’s index 2)=0.727, LR(+)2=5.212, LR(-)2=0.123. Kappa 2=0.877 >0.75, has a good consistency. Computer-aided PN detecting system based on 3D CT images has better clinical application value, and can help doctor carry out early diagnosis of lung disease (such as cancer, etc.) through CT images. PMID:26629115

  16. Imaging of the Coronary Venous System: Validation of Three-Dimensional Rotational Venous Angiography Against Dual-Source Computed Tomography

    SciTech Connect

    Knackstedt, Christian; Muehlenbruch, Georg; Mischke, Karl; Bruners, Philipp; Schimpf, Thomas; Frechen, Dirk; Schummers, Georg; Mahnken, Andreas H.; Guenther, Rolf W.; Kelm, Malte; Schauerte, Patrick

    2008-11-15

    Information on the anatomy of the cardiac venous system (CVS) is increasingly important for cardiac resynchronization therapy or percutaneous transvenous mitral valve annuloplasty. Three-dimensional (3D) imaging can further improve the understanding of the relationship of cardiac structures. This study was performed to validate the accuracy of rotational coronary sinus angiography (CSA) displaying the 3D anatomy of the CVS compared to ECG-gated, contrast-enhanced, cardiac dual-source computed tomography (DSCT). Five domestic pigs (60 kg) underwent DSCT using a standardized examination protocol. Using a standard C-arm for fluoroscopy, a rotational CSA was obtained and 3D-image reconstructions performed. Side branches were identified using both methods and enumerated. Vessel visibility was estimated for each side branch and great cardiac vein/anterior interventricular vein. Also, vessel diameters were measured at distinct landmarks, i.e., side branching. The amount of contrast medium was determined and the effective radiation exposure of both methods was calculated. There was no significant difference regarding the vessel diameter of the great cardiac vein/anterior interventricular vein or its side branches. Also, estimation of vessel visibility was not different between the two imaging modalities. Estimated radiation exposure and amount of contrast medium were lower for rotational CSA. In conclusion, a 3D reconstruction of rotational CSA images is possible. All parts of the CVS are well depicted, allowing a 3D overview of the CVS anatomy. On-site 3D visualization might improve decision making during cardiac interventions. In contrast to DSCT, rotational CSA does not demonstrate the anatomy of the mitral annulus or the course of the left circumflex artery.

  17. X-ray computed microtomography of three-dimensional microcracks and self-healing in engineered cementitious composites

    NASA Astrophysics Data System (ADS)

    Fan, Shuai; Li, Mo

    2015-01-01

    Concrete cracking and deterioration can potentially be addressed by innovative self-healing cementitious materials, which can autogenously regain transport properties and mechanical characteristics after the damage self-healing process. For the development of such materials, it is crucial, but challenging, to precisely characterize the extent and quality of self-healing due to a variety of factors. This study adopted x-ray computed microtomography (μCT) to derive three-dimensional morphological data on microcracks before and after healing in engineered cementitious composite (ECC). Scanning electron microscope and energy dispersive x-ray spectroscopy were also used to morphologically and chemically analyze the healing products. This work showed that the evolution of the microcrack 3D structure due to self-healing in cementitious materials can be directly and quantitatively characterized by μCT. A detailed description of the μCT image analysis method applied to ECC self-healing was presented. The results revealed that the self-healing extent and rate strongly depended on initial surface crack width, with smaller crack width favoring fast and robust self-healing. We also found that the self-healing mechanism in cementitious materials is dependent on crack depth. The region of a crack close to the surface (from 0 to around 50-150 μm below the surface) can be sealed quickly with crystalline precipitates. However, at greater depths the healing process inside the crack takes a significantly longer time to occur, with healing products more likely resulting from continued hydration and pozzolanic reactions. Finally, the μCT method was compared with other self-healing characterization methods, with discussions on its importance in generating new scientific knowledge for the development of robust self-healing cementitious materials.

  18. Three-Dimensional Computer Model of the Right Atrium Including the Sinoatrial and Atrioventricular Nodes Predicts Classical Nodal Behaviours

    PubMed Central

    Li, Jue; Inada, Shin; Schneider, Jurgen E.; Zhang, Henggui; Dobrzynski, Halina; Boyett, Mark R.

    2014-01-01

    The aim of the study was to develop a three-dimensional (3D) anatomically-detailed model of the rabbit right atrium containing the sinoatrial and atrioventricular nodes to study the electrophysiology of the nodes. A model was generated based on 3D images of a rabbit heart (atria and part of ventricles), obtained using high-resolution magnetic resonance imaging. Segmentation was carried out semi-manually. A 3D right atrium array model (∼3.16 million elements), including eighteen objects, was constructed. For description of cellular electrophysiology, the Rogers-modified FitzHugh-Nagumo model was further modified to allow control of the major characteristics of the action potential with relatively low computational resource requirements. Model parameters were chosen to simulate the action potentials in the sinoatrial node, atrial muscle, inferior nodal extension and penetrating bundle. The block zone was simulated as passive tissue. The sinoatrial node, crista terminalis, main branch and roof bundle were considered as anisotropic. We have simulated normal and abnormal electrophysiology of the two nodes. In accordance with experimental findings: (i) during sinus rhythm, conduction occurs down the interatrial septum and into the atrioventricular node via the fast pathway (conduction down the crista terminalis and into the atrioventricular node via the slow pathway is slower); (ii) during atrial fibrillation, the sinoatrial node is protected from overdrive by its long refractory period; and (iii) during atrial fibrillation, the atrioventricular node reduces the frequency of action potentials reaching the ventricles. The model is able to simulate ventricular echo beats. In summary, a 3D anatomical model of the right atrium containing the cardiac conduction system is able to simulate a wide range of classical nodal behaviours. PMID:25380074

  19. A comparative study of the deviation of the menton on posteroanterior cephalograms and three-dimensional computed tomography

    PubMed Central

    Lee, Hee Jin; Lee, Sungeun; Lee, Eun Joo; Song, In Ja; Kang, Byung-Cheol; Lee, Jae-Seo; Lim, Hoi-Jeong

    2016-01-01

    Purpose Facial asymmetry has been measured by the severity of deviation of the menton (Me) on posteroanterior (PA) cephalograms and three-dimensional (3D) computed tomography (CT). This study aimed to compare PA cephalograms and 3D CT regarding the severity of Me deviation and the direction of the Me. Materials and Methods PA cephalograms and 3D CT images of 35 patients who underwent orthognathic surgery (19 males and 16 females, with an average age of 22.1±3.3 years) were retrospectively reviewed in this study. By measuring the distance and direction of the Me from the midfacial reference line and the midsagittal plane in the cephalograms and 3D CT, respectively, the x-coordinates (x1 and x2) of the Me were obtained in each image. The difference between the x-coordinates was calculated and statistical analysis was performed to compare the severity of Me deviation and the direction of the Me in the two imaging modalities. Results A statistically significant difference in the severity of Me deviation was found between the two imaging modalities (Δx=2.45±2.03 mm, p<0.05) using the one-sample t-test. Statistically significant agreement was observed in the presence of deviation (k=0.64, p<0.05) and in the severity of Me deviation (k=0.27, p<0.05). A difference in the direction of the Me was detected in three patients (8.6%). The severity of the Me deviation was found to vary according to the imaging modality in 16 patients (45.7%). Conclusion The measurement of Me deviation may be different between PA cephalograms and 3D CT in some patients. PMID:27051637

  20. The use of computed tomographic three-dimensional reconstructions to develop instructional models for equine pelvic ultrasonography.

    PubMed

    Whitcomb, Mary Beth; Doval, John; Peters, Jason

    2011-01-01

    Ultrasonography has gained increased utility to diagnose pelvic fractures in horses; however, internal pelvic contours can be difficult to appreciate from external palpable landmarks. We developed three-dimensional (3D) simulations of the pelvic ultrasonographic examination to assist with translation of pelvic contours into two-dimensional (2D) images. Contiguous 1mm transverse computed tomography (CT) images were acquired through an equine femur and hemipelvis using a single slice helical scanner. 3D surface models were created using a DICOM reader and imported into a 3D modeling and animation program. The bone models were combined with a purchased 3D horse model and the skin made translucent to visualize pelvic surface contours. 3D models of ultrasound transducers were made from reference photos, and a thin sector shape was created to depict the ultrasound beam. Ultrasonographic examinations were simulated by moving transducers on the skin surface and rectally to produce images of pelvic structures. Camera angles were manipulated to best illustrate the transducer-beam-bone interface. Fractures were created in multiple configurations. Animations were exported as QuickTime movie files for use in presentations coupled with corresponding ultrasound videoclips. 3D models provide a link between ultrasonographic technique and image generation by depicting the interaction of the transducer, ultrasound beam, and structure of interest. The horse model was important to facilitate understanding of the location of pelvic structures relative to the skin surface. While CT acquisition time was brief, manipulation within the 3D software program was time intensive. Results were worthwhile from an instructional standpoint based on user feedback. PMID:21699617

  1. Evaluation of myocardial infarction size with three-dimensional speckle tracking echocardiography: a comparison with single photon emission computed tomography.

    PubMed

    Wang, Qiushuang; Zhang, Chunhong; Huang, Dangsheng; Zhang, Liwei; Yang, Feifei; An, Xiuzhi; Ouyang, Qiaohong; Zhang, Meiqing; Wang, Shuhua; Guo, Jiarui; Ji, Dongdong

    2015-12-01

    To assess whether global and regional myocardial strains from three-dimensional speckle tracking echocardiography (3D-STE) correlate with myocardial infarction size (MIS) detected by single photon emission computed tomography (SPECT). Fifty-seven patients with a history of ST-segment elevation myocardial infarction (MI) within 3-6 months were enrolled, alongside 24 healthy volunteers. Left ventricular (LV) global area strain, global longitudinal strain (GLS), global radial strain, global circumferential strain, left ventricular ejection fraction (LVEF) and wall motion score index (WMSI) were measured and compared with the corresponding SPECT-detected MISs. Patients were sub-grouped into massive MIS group (MIS ≥ 12%) and small MIS group (MIS < 12%). Myocardial strains of all the LV segments were compared with the corresponding MIS. Global myocardial strain parameters, LVEF and WMSI of the patients were significantly different from the control group (all P < 0.05) and correlated well with MISs, most significantly for GLS (r = 0.728, P < 0.01). Significant differences in myocardial strain parameters were found between the massive and small MIS groups (all P < 0.05). Receiver operating characteristic curve analysis indicated that GLS had a highest diagnostic value and when the cutoff was -13.8%, the area under the curve was 0.84, with the 70.6% sensitivity and 87.5% specificity. Significant differences of myocardial strain parameters were observed between segments with and without transmural MIs (P < 0.01). 3D-STE myocardial strain parameters evaluated LV global MIS, 3D GLS had the highest diagnostic value. It also preliminarily gauged the degree of ischemia and necrosis of regional myocardial segments.

  2. 64-Slice spiral computed tomography and three-dimensional reconstruction in the diagnosis of cystic pancreatic tumors

    PubMed Central

    WEN, ZHAOXIA; YAO, FENGQING; WANG, YUXING

    2016-01-01

    The present study aimed to describe the characteristics of cystic pancreatic tumors using computed tomography (CT) and to evaluate the diagnostic accuracy (DA) of post-imaging three-dimensional (3D) reconstruction. Clinical and imaging data, including multi-slice spiral CT scans, enhanced scans and multi-faceted reconstruction, from 30 patients with pathologically confirmed cystic pancreatic tumors diagnosed at the Linyi People's Hospital between August 2008 and June 2014 were retrospectively analyzed. Following the injection of Ultravist® 300 contrast agent, arterial, portal venous and parenchymal phase scans were obtained at 28, 60 and 150 sec, respectively, and 3D reconstructions of the CT images were generated. The average age of the patients was 38.4 years (range, 16–77 years), and the cohort included 5 males and 25 females (ratio, 1:5). The patients included 8 cases of mucinous cystadenoma (DA), 80%]; 9 cases of cystadenocarcinoma (DA, 84%); 6 cases of serous cystadenoma (DA, 100%); 3 cases of solid pseudopapillary tumor (DA, 100%); and 4 cases of intraductal papillary mucinous neoplasm (DA, 100%). 3D reconstructions of CT images were generated and, in the 4 cases of intraductal papillary mucinous neoplasm, the tumor was connected to the main pancreatic duct and multiple mural nodules were detected in one of these cases. The DA of the 3D-reconstructed images of cystic pancreatic tumors was 89.3%. The 64-slice spiral CT and 3D-reconstructed CT images facilitated the visualization of cystic pancreatic tumor characteristics, in particular the connections between the tumor and the main pancreatic duct. In conclusion, the 3D reconstruction of multi-slice CT data may provide an important source of information for the surgical team, in combination with the available clinical data. PMID:27073473

  3. Computed tomography arthrography with traction in the human hip for three-dimensional reconstruction of cartilage and the acetabular labrum

    PubMed Central

    Henak, C.R.; Abraham, C.L.; Peters, C.L.; Sanders, R.K.; Weiss, J.A.; Anderson, A.E.

    2014-01-01

    AIM To develop and demonstrate the efficacy of a computed tomography arthrography (CTA) protocol for the hip that enables accurate three-dimensional reconstructions of cartilage and excellent visualization of the acetabular labrum. MATERIALS AND METHODS Ninety-three subjects were imaged (104 scans); 68 subjects with abnormal anatomy, 11 patients after periacetabular osteotomy surgery, and 25 subjects with normal anatomy. Fifteen to 25 ml of contrast agent diluted with lidocaine was injected using a lateral oblique approach. A Hare traction splint applied traction during CT. The association between traction force and intra-articular joint space was assessed qualitatively under fluoroscopy. Cartilage geometry was reconstructed from the CTA images for 30 subjects; the maximum joint space under traction was measured. RESULTS Using the Hare traction splint, the intra-articular space and boundaries of cartilage could be clearly delineated throughout the joint; the acetabular labrum was also visible. Dysplastic hips required less traction (~5 kg) than normal and retroverted hips required (>10 kg) to separate the cartilage. An increase in traction force produced a corresponding widening of the intra-articular joint space. Under traction, the maximum width of the intra-articular joint space during CT ranged from 0.98–6.7 mm (2.46 ± 1.16 mm). CONCLUSIONS When applied to subjects with normal and abnormal hip anatomy, the CTA protocol presented yields clear delineation of the cartilage and the acetabular labrum. Use of a Hare traction splint provides a simple, cost-effective method to widen the intra-articular joint space during CT, and provides flexibility to vary the traction as required. PMID:25070373

  4. Experimental and Computational Study of Intraglottal Pressures in a Three-Dimensional Model with a Non-Rectangular Glottal Shape

    NASA Astrophysics Data System (ADS)

    Torkaman, Saeed

    2011-12-01

    The focus of this research was to experimentally and computationally study air pressures and air flows through a model of the human larynx. The model, M6, was a symmetric, three-dimensional physical model. In this model, the transverse plane of the glottis was formed by half-sinusoidal arcs for each medial vocal fold surface, creating a maximum glottal width at the midcoronal section. To study the effects of different glottal shapes, three glottal angles were used, namely, 10° convergent, 0° uniform, and 10° divergent, with the single diameter of 0.16 cm. In addition, to capture the effects of changing glottal diameters, three diameters of 0.16, 0.04, and 0.01 cm in the midcoronal plane were used, all with the single angle of 0°, (i.e., the uniform glottis). Inasmuch as the uniform case with maximum diameter (0.16 cm) was the common case in both groups, a total of five distinct pairs of modeled vocal folds were used. Each case incorporated three rows of 14 pressure taps, located in the inferior-superior direction on the vocal fold surface at locations of the anterior (1/4), middle (1/2), and posterior (3/4) of the anterior-posterior span. This approach (i.e., empirically acquiring air pressure distributions at the three locations) has not been applied in prior studies. For each configuration, transglottal pressures of 0.294, 0.491, 0.981, 1.472, 1.962, and 2.453 kPa (i.e., 3, 5, 10, 15, 20, and 25 cm H2O) were used. To consider the effects of the presence of the arytenoid cartilages on the intraglottal pressures, a simplified model of the cartilages was fabricated as a single structure based on available physiological data, and the intraglottal pressures were measured with and without its presence. With the arytenoid cartilages structure in place, the glottis is an eccentric orifice. The empirical pressures were compared to computational results obtained with the CFD software package FLUENT. Also, flow visualization using a laser sheet and seeded airflow was

  5. Prediction of plasma-induced damage distribution during silicon nitride etching using advanced three-dimensional voxel model

    SciTech Connect

    Kuboi, Nobuyuki Tatsumi, Tetsuya; Kinoshita, Takashi; Shigetoshi, Takushi; Fukasawa, Masanaga; Komachi, Jun; Ansai, Hisahiro

    2015-11-15

    The authors modeled SiN film etching with hydrofluorocarbon (CH{sub x}F{sub y}/Ar/O{sub 2}) plasma considering physical (ion bombardment) and chemical reactions in detail, including the reactivity of radicals (C, F, O, N, and H), the area ratio of Si dangling bonds, the outflux of N and H, the dependence of the H/N ratio on the polymer layer, and generation of by-products (HCN, C{sub 2}N{sub 2}, NH, HF, OH, and CH, in addition to CO, CF{sub 2}, SiF{sub 2}, and SiF{sub 4}) as ion assistance process parameters for the first time. The model was consistent with the measured C-F polymer layer thickness, etch rate, and selectivity dependence on process variation for SiN, SiO{sub 2}, and Si film etching. To analyze the three-dimensional (3D) damage distribution affected by the etched profile, the authors developed an advanced 3D voxel model that can predict the time-evolution of the etched profile and damage distribution. The model includes some new concepts for gas transportation in the pattern using a fluid model and the property of voxels called “smart voxels,” which contain details of the history of the etching situation. Using this 3D model, the authors demonstrated metal–oxide–semiconductor field-effect transistor SiN side-wall etching that consisted of the main-etch step with CF{sub 4}/Ar/O{sub 2} plasma and an over-etch step with CH{sub 3}F/Ar/O{sub 2} plasma under the assumption of a realistic process and pattern size. A large amount of Si damage induced by irradiated hydrogen occurred in the source/drain region, a Si recess depth of 5 nm was generated, and the dislocated Si was distributed in a 10 nm deeper region than the Si recess, which was consistent with experimental data for a capacitively coupled plasma. An especially large amount of Si damage was also found at the bottom edge region of the metal–oxide–semiconductor field-effect transistors. Furthermore, our simulation results for bulk fin-type field-effect transistor side-wall etching

  6. Patient-Specific Three-Dimensional Concomitant Dose From Cone Beam Computed Tomography Exposure in Image-Guided Radiotherapy

    SciTech Connect

    Spezi, Emiliano; Downes, Patrick; Jarvis, Richard; Radu, Emil; Staffurth, John

    2012-05-01

    Purpose: The purpose of the present study was to quantify the concomitant dose received by patients undergoing cone beam computed tomography (CBCT) scanning in different clinical scenarios as a part of image-guided radiotherapy (IGRT) procedures. Methods and Materials: We calculated the three-dimensional concomitant dose received as a result of CBCT scans in 6 patients representing different clinical scenarios: two pelvis, two head and neck, and two chest. We assessed the effect that a daily on-line IGRT strategy would have on the patient dose distribution, assuming 40 CBCT scans throughout the treatment course. The additional dose to the planning target volume margin region was also estimated. Results: In the pelvis, a single CBCT scan delivered a mean dose to the femoral heads of 2-6 cGy and the rectum of 1-2 cGy. An additional dose to the planning target volume was within 1-3 cGy. In the chest, the mean dose to the planning target volume varied from 2.5 to 5 cGy. The lung and spinal cord planning organ at risk volume received {<=}4 cGy and {<=}5 cGy, respectively. In the head and neck, a single CBCT scan delivered a mean dose of 0.3 cGy, with bony structures receiving 0.5-0.8 cGy. The femoral heads received an additional dose of 1.5-2.5 Gy. A reduction of 20-30% in the mean dose to the organs at risk was achieved using bowtie filtration. In the head and neck, the dose to the eyes and brainstem was eliminated by decreasing the craniocaudal field size. Conclusions: The additional dose from on-line IGRT procedures can be clinically relevant. The organ dose can be significantly reduced with the use of appropriate patient-specific settings. The concomitant dose from CBCT should be accounted for and the acquisition settings optimized for optimal IGRT strategies on a patient basis.

  7. A comparative study between data obtained from conventional lateral cephalometry and reconstructed three-dimensional computed tomography images

    PubMed Central

    Oh, Suseok; Kim, Ci-Young

    2014-01-01

    Objectives The aim of this study was to verify the concordance of the measurement values when the same cephalometric analysis method was used for two-dimensional (2D) cephalometric radiography and three-dimensional computed tomography (3D CT), and to identify which 3D Frankfort horizontal (FH) plane was the most concordant with FH plane used for cephalometric radiography. Materials and Methods Reference horizontal plane was FH plane. Palatal angle and occlusal plane angle was evaluated with FH plane. Gonial angle (GA), palatal angle, upper occlusal plane angle (UOPA), mandibular plane angle (MPA), U1 to occlusal plane angle, U1 to FH plane angle, SNA and SNB were obtained on 2D cephalmetries and reconstructed 3D CT. The values measured eight angles in 2D lateral cephalometry and reconstructed 3D CT were evaluated by intraclass correlation coefficiency (ICC). It also was evaluated to identify 3D FH plane with high degree of concordance to 2D one by studying which one in four FH planes shows the highest degree of concordance with 2D FH plane. Results ICCs of MPA (0.752), UOPA (0.745), SNA (0.798) and SNB (0.869) were high. On the other hand, ICCs of gonial angle (0.583), palatal angle (0.287), U1 to occlusal plane (0.404), U1 to FH plane (0.617) were low respectively. Additionally GA and MPA acquired from 2D were bigger than those on 3D in all 20 patients included in this study. Concordance between one UOPA from 2D and four UOPAs from 3D CT were evaluated by ICC values. Results showed no significant difference among four FH planes defined on 3D CT. Conclusion FH plane that can be set on 3D CT does not have difference in concordance from FH plane on lateral cephalometry. However, it is desirable to define FH plane on 3D CT with two orbitales and one porion considering the reproduction of orbitale itself. PMID:25045639

  8. Iterative three-dimensional expectation maximization restoration of single photon emission computed tomography images: Application in striatal imaging

    SciTech Connect

    Gantet, Pierre; Payoux, Pierre; Celler, Anna; Majorel, Cynthia; Gourion, Daniel; Noll, Dominikus; Esquerre, Jean-Paul

    2006-01-15

    Single photon emission computed tomography imaging suffers from poor spatial resolution and high statistical noise. Consequently, the contrast of small structures is reduced, the visual detection of defects is limited and precise quantification is difficult. To improve the contrast, it is possible to include the spatially variant point spread function of the detection system into the iterative reconstruction algorithm. This kind of method is well known to be effective, but time consuming. We have developed a faster method to account for the spatial resolution loss in three dimensions, based on a postreconstruction restoration method. The method uses two steps. First, a noncorrected iterative ordered subsets expectation maximization (OSEM) reconstruction is performed and, in the second step, a three-dimensional (3D) iterative maximum likelihood expectation maximization (ML-EM) a posteriori spatial restoration of the reconstructed volume is done. In this paper, we compare to the standard OSEM-3D method, in three studies (two in simulation and one from experimental data). In the two first studies, contrast, noise, and visual detection of defects are studied. In the third study, a quantitative analysis is performed from data obtained with an anthropomorphic striatal phantom filled with 123-I. From the simulations, we demonstrate that contrast as a function of noise and lesion detectability are very similar for both OSEM-3D and OSEM-R methods. In the experimental study, we obtained very similar values of activity-quantification ratios for different regions in the brain. The advantage of OSEM-R compared to OSEM-3D is a substantial gain of processing time. This gain depends on several factors. In a typical situation, for a 128x128 acquisition of 120 projections, OSEM-R is 13 or 25 times faster than OSEM-3D, depending on the calculation method used in the iterative restoration. In this paper, the OSEM-R method is tested with the approximation of depth independent

  9. A New Method to Orient Three-Dimensional Computed Tomography Models to the Natural Head Position: A Clinical Feasibility Study

    PubMed Central

    Xia, James J.; McGrory, J. Kevin; Gateno, Jaime; Teichgraeber, John F.; Dawson, Brian C.; Kennedy, Kathleen A.; Lasky, Robert E.; English, Jeryl D.; Kau, Chung H.; McGrory, Kathleen R.

    2010-01-01

    Purpose The purpose of this study was to evaluate the clinical feasibility of a new method to orient three-dimensional (3D) computed tomography (CT) models to the natural head position (NHP). This method utilizes a small and inexpensive digital orientation device to record NHP in 3D. This device consists of a digital orientation sensor attached to the patient via a facebow and an individualized bite jig. The study was designed to answer two questions: 1) whether the weight of the new device can negatively influence the NHP; and 2) wether the new method is as accurate as the gold standard. Materials and Methods Fifteen patients with craniomaxillofacial deformities were included in the study. Each patient’s NHP is recorded 3 times. The 1st NHP was recorded using a laser scanning method without the presence of the digital orientation device. The 2nd NHP was recorded using the digital orientation device. Simultaneously, the 3rd NHP wa also recorded using the laser scanning method. Each recorded NHP measurement was then transferred to the patient’s 3D CT facial model, resulting in 3 different orientations for each patient. They include: the orientation generated using the laser scanning method without the presence of the digital orientation sensor and facebow (Orientation 1); the orientation generated using the laser scanning method with the presence of the digital orientation sensor and facebow (Orientation 2); and the orientation generated using the digital orientation device (Orientation 3). The comparisons are then made between Orientations 1 and 2, and Orientations 2 and 3, respectively. Statistical analyses are performed. Results The results show that in each pair, the delta between the 2 measurements is not statistically significantly different from 0 degrees. In addition, in the 1st pair, Bland and Altman’s lower and upper limits of the delta between the 2 measurements are within 1.5° in pitch and sub-degree in roll and yaw. In the 2nd pair, the limits of

  10. State-of-the-art three-dimensional analysis of soft tissue changes following Le Fort I maxillary advancement.

    PubMed

    Almukhtar, A; Ayoub, A; Khambay, B; McDonald, J; Ju, X

    2016-09-01

    We describe the comprehensive 3-dimensional analysis of facial changes after Le Fort I osteotomy and introduce a new tool for anthropometric analysis of the face. We studied the cone-beam computed tomograms of 33 patients taken one month before and 6-12 months after Le Fort I maxillary advancement with or without posterior vertical impaction. Use of a generic facial mesh for dense correspondence analysis of changes in the soft tissue showed a mean (SD) anteroposterior advancement of the maxilla of 5.9 (1.7) mm, and mean (SD) minimal anterior and posterior vertical maxillary impaction of 0.1 (1.7) mm and 0.6 (1.45) mm, respectively. It also showed distinctive forward and marked lateral expansion around the upper lip and nose, and pronounced upward movement of the alar curvature and columella. The nose was widened and the nostrils advanced. There was minimal forward change at the base of the nose (subnasale and alar base) but a noticeable upward movement at the nasal tip. Changes at the cheeks were minimal. Analysis showed widening of the midface and upper lip which, to our knowledge, has not been reported before. The nostrils were compressed and widened, and the lower lip shortened. Changes at the chin and lower lip were secondary to the limited maxillary impaction.

  11. Conformal Coating of Three-Dimensional Nanostructures via Atomic Layer Deposition for Development of Advanced Energy Storage Devices and Plasmonic Transparent Conductors

    NASA Astrophysics Data System (ADS)

    Malek, Gary A.

    Due to the prodigious amount of electrical energy consumed throughout the world, there exists a great demand for new and improved methods of generating electrical energy in a clean and renewable manner as well as finding more effective ways to store it. This enormous task is of great interest to scientists and engineers, and much headway is being made by utilizing three-dimensional (3D) nanostructured materials. This work explores the application of two types of 3D nanostructured materials toward fabrication of advanced electrical energy storage and conversion devices. The first nanostructured material consists of vertically aligned carbon nanofibers. This three-dimensional structure is opaque, electrically conducting, and contains active sites along the outside of each fiber that are conducive to chemical reactions. Therefore, they make the perfect 3D conducting nanostructured substrate for advanced energy storage devices. In this work, the details for transforming vertically aligned carbon nanofiber arrays into core-shell structures via atomic layer deposition as well as into a mesoporous manganese oxide coated supercapacitor electrode are given. Another unique type of three-dimensional nanostructured substrate is nanotextured glass, which is transparent but non-conducting. Therefore, it can be converted to a 3D transparent conductor for possible application in photovoltaics if it can be conformally coated with a conducting material. This work details that transformation as well as the addition of plasmonic gold nanoparticles to complete the transition to a 3D plasmonic transparent conductor.

  12. Accuracy of three-dimensional soft tissue predictions in orthognathic surgery after Le Fort I advancement osteotomies.

    PubMed

    Ullah, R; Turner, P J; Khambay, B S

    2015-02-01

    Prediction of postoperative facial appearance after orthognathic surgery can be used for communication, managing patients' expectations,avoiding postoperative dissatisfaction and exploring different treatment options. We have assessed the accuracy of 3dMD Vultus in predicting the final 3-dimensional soft tissue facial morphology after Le Fort I advancement osteotomy. We retrospectively studied 13 patients who were treated with a Le Fort I advancement osteotomy alone. We used routine cone-beam computed tomographic (CT) images taken immediately before and a minimum of 6 months after operation, and 3dMD Vultus to virtually reposition the preoperative maxilla and mandible in their post operative positions to generate a prediction of what the soft tissue would look like. Segmented anatomical areas of the predicted mesh were then compared with the actual soft tissue. The means of the absolute distance between the 90th percentile of the mesh points for each region were calculated, and a one-sample Student's t test was used to calculate if the difference differed significantly from 3 mm.The differences in the mean absolute distances between the actual soft tissue and the prediction were significantly below 3 mm for all segmented anatomical areas (p < 0.001), and ranged from 0.65 mm (chin) to 1.17 mm (upper lip). 3dMD Vultus produces clinically satisfactory 3-dimensional facial soft tissue predictions after Le Fort I advancement osteotomy. The mass-spring model for prediction seems to be able to predict the position of the lip and chin, but its ability to predict nasal and paranasal areas could be improved.

  13. Evaluation of three-dimensional position change of the condylar head after orthognathic surgery using computer-aided design/computer-aided manufacturing-made condyle positioning jig.

    PubMed

    Kim, Hyung-Mo; Baek, Seung-Hak; Kim, Tae-Yun; Choi, Jin-Young

    2014-11-01

    This study was performed to evaluate the efficacy of computer-aided design/computer-aided manufacturing (CAM/CAD)-made condyle positioning jig in orthognathic surgery. The sample consisted of 40 mandibular condyles of 20 patients with class III malocclusion who underwent bilateral sagittal split ramus osteotomy with semirigid fixation (6 men and 14 women; mean age, 25 y; mean amount of mandibular setback, 5.8 mm). Exclusion criteria were patients who needed surgical correction of the frontal ramal inclination and had signs and symptoms of the temporomandibular disorder before surgery. Three-dimensional computed tomograms were taken 1 month before the surgery (T1) and 1 day after the surgery (T2). The condylar position was evaluated at the T1 and T2 stages on the axial, frontal, and sagittal aspects in the three-dimensional coordinates. The linear change of the posterior border of the proximal segment of the ramus between T1 and T2 was also evaluated in 30 condyles (15 patients), with the exception of 10 condyles of 5 patients who received mandibular angle reduction surgery. There was no significant difference in the condylar position in the frontal and sagittal aspects (P > 0.05). Although there was a significant difference in the condylar position in the axial aspect (P < 0.01), the amount of difference was less than 1 mm and 1 degree; it can be considered clinically nonsignificant. In the linear change of the posterior border of the proximal segment of the ramus, the mean change was 1.4 mm and 60% of the samples showed a minimal change of less than 1 mm. The results of this study suggest that CAD/CAM-made condyle positioning jig is easy to install and reliable to use in orthognathic surgery.

  14. Three-Dimensional Branched TiO2 Architectures in Controllable Bloom for Advanced Lithium-Ion Batteries.

    PubMed

    Wang, Shaofu; Qu, Dandan; Jiang, Yun; Xiong, Wan-Sheng; Sang, Hong-Qian; He, Rong-Xiang; Tai, Qidong; Chen, Bolei; Liu, Yumin; Zhao, Xing-Zhong

    2016-08-10

    Three-dimensional branched TiO2 architectures (3D BTA) with controllable morphologies were synthesized via a facile template-free one-pot solvothermal route. The volume ratio of deionized water (DI water) and diethylene glycol in solvothermal process is key to the formation of 3D BTA assembled by nanowire-coated TiO2 dendrites, which combines the advantages of 3D hierarchical structure and 1D nanoscale building blocks. Benefiting from such unique structural features, the BTA in full bloom achieved significantly increased specific surface areas and shortened Li(+) ion/electrons diffusion pathway. The lithium-ion batteries based on BTA in full bloom exhibited remarkably enhanced reversible specific capacity and rate performance, attributing to the high contact area with the electrolyte and the short solid state diffusion pathway for Li(+) ion/electrons promoting lithium insertion and extraction. PMID:27420343

  15. Thin film deposition at atmospheric pressure using dielectric barrier discharges: Advances on three-dimensional porous substrates and functional coatings

    NASA Astrophysics Data System (ADS)

    Fanelli, Fiorenza; Bosso, Piera; Mastrangelo, Anna Maria; Fracassi, Francesco

    2016-07-01

    Surface processing of materials by atmospheric pressure dielectric barrier discharges (DBDs) has experienced significant growth in recent years. Considerable research efforts have been directed for instance to develop a large variety of processes which exploit different DBD electrode geometries for the direct and remote deposition of thin films from precursors in gas, vapor and aerosol form. This article briefly reviews our recent progress in thin film deposition by DBDs with particular focus on process optimization. The following examples are provided: (i) the plasma-enhanced chemical vapor deposition of thin films on an open-cell foam accomplished by igniting the DBD throughout the entire three-dimensional (3D) porous structure of the substrate, (ii) the preparation of hybrid organic/inorganic nanocomposite coatings using an aerosol-assisted process, (iii) the DBD jet deposition of coatings containing carboxylic acid groups and the improvement of their chemical and morphological stability upon immersion in water.

  16. Computer Simulation of Spatial Arrangement and Connectivity of Particles in Three-Dimensional Microstructure: Application to Model Electrical Conductivity of Polymer Matrix Composite

    NASA Technical Reports Server (NTRS)

    Louis, P.; Gokhale, A. M.

    1996-01-01

    Computer simulation is a powerful tool for analyzing the geometry of three-dimensional microstructure. A computer simulation model is developed to represent the three-dimensional microstructure of a two-phase particulate composite where particles may be in contact with one another but do not overlap significantly. The model is used to quantify the "connectedness" of the particulate phase of a polymer matrix composite containing hollow carbon particles in a dielectric polymer resin matrix. The simulations are utilized to estimate the morphological percolation volume fraction for electrical conduction, and the effective volume fraction of the particles that actually take part in the electrical conduction. The calculated values of the effective volume fraction are used as an input for a self-consistent physical model for electrical conductivity. The predicted values of electrical conductivity are in very good agreement with the corresponding experimental data on a series of specimens having different particulate volume fraction.

  17. Accuracy Assessment of Three-dimensional Surface Reconstructions of In vivo Teeth from Cone-beam Computed Tomography

    PubMed Central

    Sang, Yan-Hui; Hu, Hong-Cheng; Lu, Song-He; Wu, Yu-Wei; Li, Wei-Ran; Tang, Zhi-Hui

    2016-01-01

    Background: The accuracy of three-dimensional (3D) reconstructions from cone-beam computed tomography (CBCT) has been particularly important in dentistry, which will affect the effectiveness of diagnosis, treatment plan, and outcome in clinical practice. The aims of this study were to assess the linear, volumetric, and geometric accuracy of 3D reconstructions from CBCT and to investigate the influence of voxel size and CBCT system on the reconstructions results. Methods: Fifty teeth from 18 orthodontic patients were assigned to three groups as NewTom VG 0.15 mm group (NewTom VG; voxel size: 0.15 mm; n = 17), NewTom VG 0.30 mm group (NewTom VG; voxel size: 0.30 mm; n = 16), and VATECH DCTPRO 0.30 mm group (VATECH DCTPRO; voxel size: 0.30 mm; n = 17). The 3D reconstruction models of the teeth were segmented from CBCT data manually using Mimics 18.0 (Materialise Dental, Leuven, Belgium), and the extracted teeth were scanned by 3Shape optical scanner (3Shape A/S, Denmark). Linear and volumetric deviations were separately assessed by comparing the length and volume of the 3D reconstruction model with physical measurement by paired t-test. Geometric deviations were assessed by the root mean square value of the imposed 3D reconstruction and optical models by one-sample t-test. To assess the influence of voxel size and CBCT system on 3D reconstruction, analysis of variance (ANOVA) was used (α = 0.05). Results: The linear, volumetric, and geometric deviations were −0.03 ± 0.48 mm, −5.4 ± 2.8%, and 0.117 ± 0.018 mm for NewTom VG 0.15 mm group; −0.45 ± 0.42 mm, −4.5 ± 3.4%, and 0.116 ± 0.014 mm for NewTom VG 0.30 mm group; and −0.93 ± 0.40 mm, −4.8 ± 5.1%, and 0.194 ± 0.117 mm for VATECH DCTPRO 0.30 mm group, respectively. There were statistically significant differences between groups in terms of linear measurement (P < 0.001), but no significant difference in terms of volumetric measurement (P = 0.774). No statistically significant difference were

  18. Evaluation of Lip Cant Change by 2-Jaw Surgery in Class III Asymmetry Cases Using Three-Dimensional Facial Scan in Conjunction With Computed Tomographic Images.

    PubMed

    Ko, Jeong-Min; Choi, Jin-Young; Baek, Seung-Hak

    2015-06-01

    The aim of our study was to evaluate the effect of cant correction in the anterior (AMXTOP) and posterior maxillary transverse occlusal planes (PMXTOP) on the change in lip cant (LC) using three-dimensional facial scan (FS) in conjunction with computed tomographic (CT) images. Thirty-five class III asymmetry patients treated with 2-jaw surgery were selected. Three-dimensional CT and three-dimensional FS images were taken before (T1) and after orthognathic surgery (T2). After obtaining the same head orientation between 2 images, bracket slot midpoints of the maxillary right and left canines as well as the first molars, point A, point B, and menton on three-dimensional CT images and the right and left lip commissures on three-dimensional FS images were located. Linear and angular variables of AMXTOP, PMXTOP, and LC were measured and statistically analyzed. At the T1 stage, linear and angular LC showed significant correlations with linear and angular cant of AMXTOP and PMXTOP, as well as menton deviation (all P < 0.001). During T1 to T2, significant linear and angular cant corrections were observed: ΔAMXTOP (1.3 mm, 1.9 degrees), ΔPMXTOP (1.9 mm, 1.7 degrees), and ΔLC (1.5 mm, 1.8 degrees) (all P < 0.001). Although angular change ratios of ΔLC/ΔAMXTOP and ΔLC/ΔPMXTOP did not exhibit a significant difference (1.0 vs 0.7), linear change ratio of ΔLC/ΔAMXTOP was higher than that of ΔLC/ΔPMXTOP (3.0 vs 0.5, P < 0.05). The vertical change in commissures was related to that in the maxillary right and left canines or maxillary right and left first molars and the extent of mandibular setback (all P < 0.01). To conclude, the use of three-dimensional FS images in conjunction with three-dimensional CT can provide more accurate information for changes in AMXTOP, PMXTOP, and LC.

  19. Volumetric changes in pharyngeal airway in Class II division 1 patients treated with Forsus-fixed functional appliance: A three-dimensional cone-beam computed tomography study

    PubMed Central

    Temani, Parul; Jain, Pradeep; Rathee, Pooja; Temani, Ruchira

    2016-01-01

    Objective: Recent years have witnessed a renewed interest to determine a quantifiable relationship between mandibular advancement performed with an orthodontic appliance and the resulting airway volume. The study was conducted to evaluate the volumetric changes in pharyngeal airway space using cone-beam computed tomography (CBCT) in Class II division 1 patients with retrognathic mandible treated by Forsus-fixed functional appliance and to compare them with their pretreatment findings. Materials and Methods: Thirty patients with Class II division 1 malocclusion of age group 10–17 years were selected randomly and evaluated for changes in pharyngeal airway volume with and without Forsus-fixed functional appliance. Patients in each group underwent CBCT scan of head and neck region at pretreatment stage and 6 months after the initial scan. Institutional approval for the project was obtained from the Ethical Committee. Volumetric changes of upper (oropharynx) and lower (hypopharynx) pharyngeal airways were measured on scanogram using computer software and intragroup comparisons were done. Results: There was a statistically significant increase in the volume of both hypopharynx and oropharynx and also total airway volume in patients treated with Forsus-fixed functional appliance. Three-dimensional reconstruction of the airway also demonstrates a considerable increase in pharyngeal airway space. Conclusion: Forsus-fixed functional appliance can be a promising appliance for improving pharyngeal airway volume in Class II division 1 patients with retrognathic mandible thus preventing obstructive sleep apnea and other respiratory problems in future. However, the long-term implications of this treatment modality need further consideration and a longer period of follow-up. PMID:27041897

  20. FOR3D: A computer model for solving the LSS (Lee-Saad-Schultz) three-dimensional, wide angle wave equation

    NASA Astrophysics Data System (ADS)

    Botseas, George; Lee, Ding; King, David

    1987-08-01

    A computer model is developed for implementing the Lee-Saad-Schultz (LSS) method for solving the LSS Three-dimensional wide angle wave equation. The model is designed to predict propagation loss in range-, depth-, and azimuthal-dependent ocean environments. Computational speed is favorable since the Lee-Saad-Schultz method requires only solving two tri-diagonal systems of equations for each step marched forward in range. A test problem is included for demonstrating accuracy and the capabilities of the model. The model is written in Fortran for a VAX 11/780 computer.

  1. Creating Three-Dimensional Scenes

    ERIC Educational Resources Information Center

    Krumpe, Norm

    2005-01-01

    Persistence of Vision Raytracer (POV-Ray), a free computer program for creating photo-realistic, three-dimensional scenes and a link for Mathematica users interested in generating POV-Ray files from within Mathematica, is discussed. POV-Ray has great potential in secondary mathematics classrooms and helps in strengthening students' visualization…

  2. Three-dimensional stellarator codes

    PubMed Central

    Garabedian, P. R.

    2002-01-01

    Three-dimensional computer codes have been used to develop quasisymmetric stellarators with modular coils that are promising candidates for a magnetic fusion reactor. The mathematics of plasma confinement raises serious questions about the numerical calculations. Convergence studies have been performed to assess the best configurations. Comparisons with recent data from large stellarator experiments serve to validate the theory. PMID:12140367

  3. Three-dimensional marginal separation

    NASA Technical Reports Server (NTRS)

    Duck, Peter W.

    1988-01-01

    The three dimensional marginal separation of a boundary layer along a line of symmetry is considered. The key equation governing the displacement function is derived, and found to be a nonlinear integral equation in two space variables. This is solved iteratively using a pseudo-spectral approach, based partly in double Fourier space, and partly in physical space. Qualitatively, the results are similar to previously reported two dimensional results (which are also computed to test the accuracy of the numerical scheme); however quantitatively the three dimensional results are much different.

  4. Computer Simulation Study of Human Locomotion with a Three-Dimensional Entire-Body Neuro-Musculo-Skeletal Model

    NASA Astrophysics Data System (ADS)

    Hase, Kazunori; Yamazaki, Nobutoshi

    A model having a three-dimensional entire-body structure and consisting of both the neuronal system and the musculo-skeletal system was proposed to precisely simulate human walking motion. The dynamics of the human body was represented by a 14-rigid-link system and 60 muscular models. The neuronal system was represented by three sub-systems: the rhythm generator system consisting of 32 neural oscillators, the sensory feedback system, and the peripheral system expressed by static optimization. Unknown neuronal parameters were adjusted by a numerical search method using the evaluative criterion for locomotion that was defined by a hybrid between the locomotive energy efficiency and the smoothness of the muscular tensions. The model could successfully generate continuous and three-dimensional walking patterns and stabilized walking against mechanical perturbation. The walking pattern was more stable than that of the model based on dynamic optimization, and more precise than that of the previous model based on a similar neuronal system.

  5. Complex three dimensional modelling of porous media using high performance computing and multi-scale incompressible approach

    NASA Astrophysics Data System (ADS)

    Martin, R.; Orgogozo, L.; Noiriel, C. N.; Guibert, R.; Golfier, F.; Debenest, G.; Quintard, M.

    2013-05-01

    In the context of biofilm growth in porous media, we developed high performance computing tools to study the impact of biofilms on the fluid transport through pores of a solid matrix. Indeed, biofilms are consortia of micro-organisms that are developing in polymeric extracellular substances that are generally located at a fluid-solid interfaces like pore interfaces in a water-saturated porous medium. Several applications of biofilms in porous media are encountered for instance in bio-remediation methods by allowing the dissolution of organic pollutants. Many theoretical studies have been done on the resulting effective properties of these modified media ([1],[2], [3]) but the bio-colonized porous media under consideration are mainly described following simplified theoretical media (stratified media, cubic networks of spheres ...). Therefore, recent experimental advances have provided tomography images of bio-colonized porous media which allow us to observe realistic biofilm micro-structures inside the porous media [4]. To solve closure system of equations related to upscaling procedures in realistic porous media, we solve the velocity field of fluids through pores on complex geometries that are described with a huge number of cells (up to billions). Calculations are made on a realistic 3D sample geometry obtained by X micro-tomography. Cell volumes are coming from a percolation experiment performed to estimate the impact of precipitation processes on the properties of a fluid transport phenomena in porous media [5]. Average permeabilities of the sample are obtained from velocities by using MPI-based high performance computing on up to 1000 processors. Steady state Stokes equations are solved using finite volume approach. Relaxation pre-conditioning is introduced to accelerate the code further. Good weak or strong scaling are reached with results obtained in hours instead of weeks. Factors of accelerations of 20 up to 40 can be reached. Tens of geometries can now be

  6. Three-dimensional Nitrogen-Doped Graphene Supported Molybdenum Disulfide Nanoparticles as an Advanced Catalyst for Hydrogen Evolution Reaction

    NASA Astrophysics Data System (ADS)

    Dong, Haifeng; Liu, Conghui; Ye, Haitao; Hu, Linping; Fugetsu, Bunshi; Dai, Wenhao; Cao, Yu; Qi, Xueqiang; Lu, Huiting; Zhang, Xueji

    2015-12-01

    An efficient three-dimensional (3D) hybrid material of nitrogen-doped graphene sheets (N-RGO) supporting molybdenum disulfide (MoS2) nanoparticles with high-performance electrocatalytic activity for hydrogen evolution reaction (HER) is fabricated by using a facile hydrothermal route. Comprehensive microscopic and spectroscopic characterizations confirm the resulting hybrid material possesses a 3D crumpled few-layered graphene network structure decorated with MoS2 nanoparticles. Electrochemical characterization analysis reveals that the resulting hybrid material exhibits efficient electrocatalytic activity toward HER under acidic conditions with a low onset potential of 112 mV and a small Tafel slope of 44 mV per decade. The enhanced mechanism of electrocatalytic activity has been investigated in detail by controlling the elemental composition, electrical conductance and surface morphology of the 3D hybrid as well as Density Functional Theory (DFT) calculations. This demonstrates that the abundance of exposed active sulfur edge sites in the MoS2 and nitrogen active functional moieties in N-RGO are synergistically responsible for the catalytic activity, whilst the distinguished and coherent interface in MoS2/N-RGO facilitates the electron transfer during electrocatalysis. Our study gives insights into the physical/chemical mechanism of enhanced HER performance in MoS2/N-RGO hybrids and illustrates how to design and construct a 3D hybrid to maximize the catalytic efficiency.

  7. Three-dimensional Nitrogen-Doped Graphene Supported Molybdenum Disulfide Nanoparticles as an Advanced Catalyst for Hydrogen Evolution Reaction

    PubMed Central

    Dong, Haifeng; Liu, Conghui; Ye, Haitao; Hu, Linping; Fugetsu, Bunshi; Dai, Wenhao; Cao, Yu; Qi, Xueqiang; Lu, Huiting; Zhang, Xueji

    2015-01-01

    An efficient three-dimensional (3D) hybrid material of nitrogen-doped graphene sheets (N-RGO) supporting molybdenum disulfide (MoS2) nanoparticles with high-performance electrocatalytic activity for hydrogen evolution reaction (HER) is fabricated by using a facile hydrothermal route. Comprehensive microscopic and spectroscopic characterizations confirm the resulting hybrid material possesses a 3D crumpled few-layered graphene network structure decorated with MoS2 nanoparticles. Electrochemical characterization analysis reveals that the resulting hybrid material exhibits efficient electrocatalytic activity toward HER under acidic conditions with a low onset potential of 112 mV and a small Tafel slope of 44 mV per decade. The enhanced mechanism of electrocatalytic activity has been investigated in detail by controlling the elemental composition, electrical conductance and surface morphology of the 3D hybrid as well as Density Functional Theory (DFT) calculations. This demonstrates that the abundance of exposed active sulfur edge sites in the MoS2 and nitrogen active functional moieties in N-RGO are synergistically responsible for the catalytic activity, whilst the distinguished and coherent interface in MoS2/N-RGO facilitates the electron transfer during electrocatalysis. Our study gives insights into the physical/chemical mechanism of enhanced HER performance in MoS2/N-RGO hybrids and illustrates how to design and construct a 3D hybrid to maximize the catalytic efficiency. PMID:26639026

  8. The sinonasal communication in the horse: examinations using computerized three-dimensional reformatted renderings of computed-tomography datasets

    PubMed Central

    2014-01-01

    Background Sinusitis is a common disease in the horse. In human medicine it is described, that obstruction of the sinonasal communication plays a major role in the development of sinusitis. To get spatial sense of the equine specific communication ways between the nasal cavity and the paranasal sinuses, heads of 19 horses, aged 2 to 26 years, were analyzed using three-dimensional (3D) reformatted renderings of CT-datasets. Three-dimensional models were generated following manual and semi-automated segmentation. Before segmentation, the two-dimensional (2D) CT-images were verified against corresponding frozen sections of cadaveric heads. Results Three-dimensional analysis of the paranasal sinuses showed the bilateral existence of seven sinus compartments: rostral maxillary sinus, ventral conchal sinus, caudal maxillary sinus, dorsal conchal sinus, frontal sinus, sphenopalatine sinus and middle conchal sinus. The maxillary septum divides these seven compartments into two sinus systems: a rostral paranasal sinus system composed of the rostral maxillary sinus and the ventral conchal sinus and a caudal paranasal sinus system which comprises all other sinuses. The generated 3D models revealed a typically configuration of the sinonasal communication ways. The sinonasal communication started within the middle nasal meatus at the nasomaxillary aperture (Apertura nasomaxillaris), which opens in a common sinonasal channel (Canalis sinunasalis communis). This common sinonasal channel ramifies into a rostral sinonasal channel (Canalis sinunasalis rostralis) and a caudo-lateral sinonasal channel (Canalis sinunasalis caudalis). The rostral sinonasal channel ventilated the rostral paranasal sinus system, the caudo-lateral sinonasal channel opened into the caudal paranasal sinus system. The rostral sinonasal channel was connected to the rostral paranasal sinuses in various ways. Whereas, the caudal channel showed less anatomical variations and was in all cases connected to the

  9. True three-dimensional dose computations for megavoltage x-ray therapy: a role for the superposition principle.

    PubMed

    Battista, J J; Sharpe, M B

    1992-12-01

    The objective of radiation therapy is to concentrate a prescribed radiation dose accurately within a target volume in the patient. Major advances in imaging technology have greatly improved our ability to plan radiation treatments in three dimensions (3D) and to verify the treatment geometrically, but there is a concomitant need to improve dosimetric accuracy. It has been recommended that radiation doses should be computed with an accuracy of 3% within the target volume and in radiosensitive normal tissues. We review the rationale behind this recommendation, and describe a new generation of 3D dose algorithms which are capable of achieving this goal. A true 3D dose calculation tracks primary and scattered radiations in 3D space while accounting for tissue inhomogeneities. In the past, dose distributions have been computed in a 2D transverse slice with the assumption that the anatomy of the patient dose not change abruptly in nearby slices. We demonstrate the importance of computing 3D scatter contributions to dose from photons and electrons correctly, and show the magnitude of dose errors caused by using traditional 2D methods. The Monte Carlo technique is the most general and rigorous approach since individual primary and secondary particle tracks are simulated. However, this approach is too time-consuming for clinical treatment planning. We review an approach that is based on the superposition principle and achieves a reasonable compromise between the speed of computation and accuracy in dose. In this approach, dose deposition is separated into two steps. Firstly, the attenuation of incident photons interacting in the absorber is computed to determine the total energy released in the material (TERMA). This quantity is treated as an impulse at each irradiated point. Secondly, the transport of energy by scattered photons and electrons is described by a point dose spread kernel. The dose distribution is the superposition of the kernels, weighted by the magnitude of

  10. Three-Dimensional Incompressible Navier-Stokes Flow Computations about Complete Configurations Using a Multiblock Unstructured Grid Approach

    NASA Technical Reports Server (NTRS)

    Sheng, Chunhua; Hyams, Daniel G.; Sreenivas, Kidambi; Gaither, J. Adam; Marcum, David L.; Whitfield, David L.

    2000-01-01

    A multiblock unstructured grid approach is presented for solving three-dimensional incompressible inviscid and viscous turbulent flows about complete configurations. The artificial compressibility form of the governing equations is solved by a node-based, finite volume implicit scheme which uses a backward Euler time discretization. Point Gauss-Seidel relaxations are used to solve the linear system of equations at each time step. This work employs a multiblock strategy to the solution procedure, which greatly improves the efficiency of the algorithm by significantly reducing the memory requirements by a factor of 5 over the single-grid algorithm while maintaining a similar convergence behavior. The numerical accuracy of solutions is assessed by comparing with the experimental data for a submarine with stem appendages and a high-lift configuration.

  11. Three Dimensional Illustrating--Three-Dimensional Vision and Deception of Sensibility

    ERIC Educational Resources Information Center

    Szállassy, Noémi; Gánóczy, Anita; Kriska, György

    2009-01-01

    The wide-spread digital photography and computer use gave the opportunity for everyone to make three-dimensional pictures and to make them public. The new opportunities with three-dimensional techniques give chance for the birth of new artistic photographs. We present in detail the biological roots of three-dimensional visualization, the phenomena…

  12. Dynamic three-dimensional echocardiographic imaging of congenital heart defects in infants and children by computer-controlled tomographic parallel slicing using a single integrated ultrasound instrument.

    PubMed

    Fulton, D R; Marx, G R; Pandian, N G; Romero, B A; Mumm, B; Krauss, M; Wollschläger, H; Ludomirsky, A; Cao, Q L

    1994-03-01

    Three-dimensional cardiac reconstruction generated from transesophageal interrogation can be performed using an integrated unit that captures, processes, and postprocesses tomographic parallel slices of the heart. This probe was used for infants and young children in the transthoracic position to evaluate the feasibility of producing three-dimensional cardiac images with capability for real-time dynamic display. Twenty-two infants and children (range 1 day-3.5 years) underwent image acquisition using a 16 mm 5 MHz 64 element probe placed over the precordium. Two infants were also imaged from the subcostal position. Data was obtained and stored over a single cardiac cycle after acceptable cardiac and respiratory gating intervals were met. The transducer was advanced in 0.5-1 mm increments over the cardiac structures using identical acquisition criteria. The images were reconstructed from the stored digital cubic format and could be oriented in any desired plane. In 9 of the 22 infants the images obtained were of optimal quality. The images obtained displayed normal cardiac structures emphasizing depth relationships as well as visualization of planes not generally demonstrated by two-dimensional imaging. Several lesions were also depicted in a unique fashion using this technique. Though the method employed was limited by movement artifact and reconstruction time, the quality of the three-dimensional display was excellent and enhanced by real-time demonstration. The transthoracic approach was successful in capturing sufficient data to create three-dimensional images, which may have further application in more accurate diagnosis of complex cardiac abnormalities and generation of planes of view which could duplicate surgical visualization of a lesion. Further assessment of the technique in infants with congenital heart disease is warranted. PMID:10146717

  13. Use of three-dimensional computed tomography images in dental care of children and adolescents in Korea.

    PubMed

    Shim, Youn-Soo; Kim, Ah-Hyeon; Choi, Ja-Eun; An, So-Youn

    2014-01-01

    Advances in computed tomography (CT) technology - from traditional CT to cone beam (CB) CT - have benefitted both the dentists and their young patients. We therefore wanted to determine the prevalence of CBCT use in pediatric dentistry in Korea. Our first approach was to conduct an institutional survey to evaluate the use of CBCT for diagnosing and evaluating dental problems in pediatric patients. Our second approach was to review any articles published during 2002-2011 in the Journal of the Korean Academy of Pediatric Dentistry that described clinical use of CBCT. The journal articles surveyed indicated that there were three areas in which CBCT was most useful. The most prevalent use was for diagnosis and monitoring of the growth of cystomas and other tumors in the mouth. The second most common use of CBCT was localization of impacted teeth and evaluation of their relations with adjacent teeth. The third use was to observe supernumerary teeth and evaluate their relations with the roots of adjacent teeth. Compared with traditional CT, CBCT has shorter acquisition times and causes less radiation exposure to the patient. There are fewer side effects with CBCT because its accuracy allows minimally invasive treatment for such problems as impacted and supernumerary teeth. PMID:24704642

  14. Repeat validation of a method to measure in vivo three dimensional hip kinematics using computed tomography and fluoroscopy.

    PubMed

    Hossain, Md Mowrin; Alam, Md Jahangir; Pickering, Mark R; Ward, Thomas; Perriman, Diana; Scarvell, Jennie M; Smith, Paul N

    2014-01-01

    Total hip arthroplasty or THA is a surgical procedure for the relief of significant disabling pain caused by osteoarthritis or hip fracture. Knowledge of the 3D kinematics of the hip during specific functional activities is important for THA component design. In this paper we compare kinematic measurements obtained by a new 2D-3D registration algorithm with measurements provided by the gold standard roentgen stereo analysis (RSA). The study validates a promising method for investigating the kinematics of some pathologies, which involves fitting three dimensional patient specific 3D CT scans to dynamic fluoroscopic images of the hip during functional activities. This is the first study in which single plane fluoroscopy has been used for kinematic measurements of natural hip bones. The main focus of the study is on the out-of-plane translation and rotation movements which are difficult to measure precisely using a single plane approach. From our experimental results we found that the precision of our proposed approach compares favourably with that of the most recent dual plane fluoroscopy approach.

  15. Study of propagation characteristics of very low latitude whistlers by means of three-dimensional ray-tracing computations

    NASA Astrophysics Data System (ADS)

    Ohta, Kenji; Nishimura, Yasuhiro; Kitagawa, Tomomi; Hayakawa, Masashi

    1997-04-01

    The propagation mechanism of very low latitude (geomagnetic latitudes of less than 10-15°) whistlers is poorly understood. There is a controversy on their propagation; some workers using the observational facts have suggested field-aligned propagation, but some theoretical (ray tracing) works have all indicated nonducted propagation. This paper reexamines the propagation characteristics of nonducted propagation, but we use three-dimensional ray tracing (different from previous works) for realistic ionosphere/magnetosphere models (the electron density profile with latitudinal and longitudinal gradients and the International Geomagnetic Reference Field (IGRF) magnetic field model instead of the conventional dipole model). By assuming small possible tilts (in the latitudinal and longitudinal direction) of the initial wave normal angle in the input southern hemisphere, we have found that it is possible for us to detect simultaneously, at a very low latitude position in the northern ionosphere, one-hop whistler rays started from slightly spaced locations in the south with different initial wave normal angles and that some of them can penetrate through the ionosphere, but some others cannot. On the basis of systematic analysis of important parameters, we come to the general conclusion that it is possible for us to find a closely spaced set of paths to reproduce the one-hop and three-hop whistlers in the north and to have the dispersion ratio of 1:3. The echo train whistlers, as were often observed by Hayakawa et al. [1990], are realized also by this nonducted propagation without any serious requirements.

  16. The vector of jaw muscle force as determined by computer-generated three dimensional simulation: a test of Greaves' model.

    PubMed

    Clausen, Philip; Wroe, Stephen; McHenry, Colin; Moreno, Karen; Bourke, Jason

    2008-11-14

    We present results from a detailed three-dimensional finite element analysis of the cranium and mandible of the Australian dingo (Canis lupus dingo) during a range of feeding activities and compare results with predictions based on two-dimensional methodology [Greaves, W.S., 2000. Location of the vector of jaw muscle force in mammals. Journal of Morphology 243, 293-299]. Greaves showed that the resultant muscle vector intersects the mandible line slightly posterior to the lower third molar (m3). Our work demonstrates that this is qualitatively correct, although the actual point is closer to the jaw joint. We show that it is theoretically possible for the biting side of the mandible to dislocate during unilateral biting; however, the bite point needs to be posterior to m3. Simulations show that reduced muscle activation on the non-biting side can considerably diminish the likelihood of dislocation with only a minor decrease in bite force during unilateral biting. By modulating muscle recruitment the animal may be able to maximise bite force whilst minimising the risk of dislocation. PMID:18838138

  17. Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory.

    PubMed

    Yonetani, Yoshiteru; Maruyama, Yutaka; Hirata, Fumio; Kono, Hidetoshi

    2008-05-14

    Because proteins and DNA interact with each other and with various small molecules in the presence of water molecules, we cannot ignore their hydration when discussing their structural and energetic properties. Although high-resolution crystal structure analyses have given us a view of tightly bound water molecules on their surface, the structural data are still insufficient to capture the detailed configurations of water molecules around the surface of these biomolecules. Thanks to the invention of various computational algorithms, computer simulations can now provide an atomic view of hydration. Here, we describe the apparent patterns of DNA hydration calculated by using two different computational methods: Molecular dynamics (MD) simulation and three-dimensional reference interaction site model (3D-RISM) theory. Both methods are promising for obtaining hydration properties, but until now there have been no thorough comparisons of the calculated three-dimensional distributions of hydrating water. This rigorous comparison showed that MD and 3D-RISM provide essentially similar hydration patterns when there is sufficient sampling time for MD and a sufficient number of conformations to describe molecular flexibility for 3D-RISM. This suggests that these two computational methods can be used to complement one another when evaluating the reliability of the calculated hydration patterns. PMID:18532849

  18. Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory

    NASA Astrophysics Data System (ADS)

    Yonetani, Yoshiteru; Maruyama, Yutaka; Hirata, Fumio; Kono, Hidetoshi

    2008-05-01

    Because proteins and DNA interact with each other and with various small molecules in the presence of water molecules, we cannot ignore their hydration when discussing their structural and energetic properties. Although high-resolution crystal structure analyses have given us a view of tightly bound water molecules on their surface, the structural data are still insufficient to capture the detailed configurations of water molecules around the surface of these biomolecules. Thanks to the invention of various computational algorithms, computer simulations can now provide an atomic view of hydration. Here, we describe the apparent patterns of DNA hydration calculated by using two different computational methods: Molecular dynamics (MD) simulation and three-dimensional reference interaction site model (3D-RISM) theory. Both methods are promising for obtaining hydration properties, but until now there have been no thorough comparisons of the calculated three-dimensional distributions of hydrating water. This rigorous comparison showed that MD and 3D-RISM provide essentially similar hydration patterns when there is sufficient sampling time for MD and a sufficient number of conformations to describe molecular flexibility for 3D-RISM. This suggests that these two computational methods can be used to complement one another when evaluating the reliability of the calculated hydration patterns.

  19. Computed Analysis of Three-Dimensional Cone-Beam Computed Tomography Angiography for Determination of Tumor-Feeding Vessels During Chemoembolization of Liver Tumor: A Pilot Study

    SciTech Connect

    Deschamps, Frederic; Solomon, Stephen B.; Thornton, Raymond H.; Rao, Pramod; Hakime, Antoine; Kuoch, Viseth; Baere, Thierry de

    2010-12-15

    The purpose of this study was to evaluate computed analysis of three-dimensional (3D) cone-beam computed tomography angiography (CTA) of the liver for determination of subsegmental tumor-feeding vessels (FVs). Eighteen consecutive patients underwent transarterial chemoembolization (TACE) from January to October 2008 for 25 liver tumors (15 hepatocellular carcinomas [HCCs] and 10 neuroendocrine metastases). Anteroposterior projection angiogram (two-dimensional [2D]) and 3D cone-beam CTA images were acquired by injection of the common hepatic artery. Retrospectively, FVs were independently identified by three radiology technologists using a software package (S) that automatically determines FVs by analysis of 3D images. Subsequently, three interventional radiologists (IRs) independently identified FVs by reviewing the 2D images followed by examination of the 3D images. Finally, the 'ground truth' for the number and location of FVs was obtained by consensus among the IRs, who were allowed to use any imaging-including 2D, 3D, and all oblique or selective angiograms-for such determination. Sensitivities, durations, and degrees of agreement for review of 2D, 3D, and S results were evaluated. Sensitivity of 3D (73%) was higher than 2D (64%) images for identification of FVs (P = 0.036). The sensitivity of S (93%) was higher than 2D (P = 0.02) and 3D (P = 0.005) imaging. The duration for review of 3D imaging was longer than that for 2D imaging (187 vs. 94 s, P = 0.0001) or for S (135 s, P = 0.0001). The degree of agreement between the IRs using 2D and 3D imaging were 54% and 62%, respectively, whereas it was 82% between the three radiology technologists using S. These preliminary data show that computed determination of FVs is both accurate and sensitive.

  20. Clinical structural anatomy of the inferior pyramidal space reconstructed from the living heart: Three-dimensional visualization using multidetector-row computed tomography.

    PubMed

    Mori, Shumpei; Nishii, Tatsuya; Takaya, Tomofumi; Kashio, Kazuhiro; Kasamatsu, Akira; Takamine, Sachiko; Ito, Tatsuro; Fujiwara, Sei; Kono, Atsushi K; Hirata, Ken-Ichi

    2015-10-01

    The inferior pyramidal space (IPS) comprises the epicardial visceral adipose tissue wedged between the bottoms of the four cardiac chambers from the postero-inferior epicardial surface of the heart. Understanding the complex anatomy around the IPS is important for clinical cardiologists. Although leading anatomists and radiologists have clarified the anatomy of the IPS in detail, few studies have demonstrated this anatomy in three dimensions. The aim of this study was to visualize the three-dimensional anatomy of the IPS reconstructed from the living heart using multidetector-row computed tomography. We also developed an original paper model of the IPS to enhance understanding of its intricate structure.

  1. TEMPEST: A three-dimensional time-dependent computer program for hydrothermal analysis: Volume 2, Assessment and verification results

    SciTech Connect

    Eyler, L L; Trent, D S; Budden, M J

    1983-09-01

    During the course of the TEMPEST computer code development a concurrent effort was conducted to assess the code's performance and the validity of computed results. The results of this work are presented in this document. The principal objective of this effort was to assure the code's computational correctness for a wide range of hydrothermal phenomena typical of fast breeder reactor application. 47 refs., 94 figs., 6 tabs.

  2. Validation of admittance computed left ventricular volumes against real-time three-dimensional echocardiography in the porcine heart.

    PubMed

    Kutty, Shelby; Kottam, Anil T; Padiyath, Asif; Bidasee, Keshore R; Li, Ling; Gao, Shunji; Wu, Juefei; Lof, John; Danford, David A; Kuehne, Titus

    2013-06-01

    The admittance and Wei's equation is a new technique for ventricular volumetry to determine pressure-volume relations that addresses traditional conductance-related issues of parallel conductance and field correction factor. These issues with conductance have prevented researchers from obtaining real-time absolute ventricular volumes. Moreover, the time-consuming steps involved in processing conductance catheter data warrant the need for a better catheter-based technique for ventricular volumetry. We aimed to compare the accuracy of left ventricular (LV) volumetry between the new admittance catheterization technique and transoesophageal real-time three-dimensional echocardiography (RT3DE) in a large-animal model. Eight anaesthetized pigs were used. A 7 French admittance catheter was positioned in the LV via the right carotid artery. The catheter was connected to an admittance control unit (ADVantage; Transonic Scisense Inc.), and data were recorded on a four-channel acquisition system (FA404; iWorx Systems). Admittance catheterization data and transoesophageal RT3DE (X7-2; Philips) data were simultaneously obtained with the animal ventilated, under neuromuscular blockade and monitored in baseline conditions and during dobutamine infusion. Left ventricular volumes measured from admittance catheterization (Labscribe; iWorx Systems) and RT3DE (Qlab; Philips) were compared. In a subset of four animals, admittance volumes were compared with those obtained from traditional conductance catheterization (MPVS Ultra; Millar Instruments). Of 37 sets of measurements compared, admittance- and RT3DE-derived LV volumes and ejection fractions at baseline and in the presence of dobutamine exhibited general agreement, with mean percentage intermethod differences of 10% for end-diastolic volumes, 14% for end-systolic volumes and 9% for ejection fraction; the respective intermethod differences between admittance and conductance in eight data sets compared were 11, 11 and 12

  3. The Impact of Three-Dimensional Computational Modeling on Student Understanding of Astronomical Concepts: A Quantitative Analysis

    ERIC Educational Resources Information Center

    Hansen, John; Barnett, Michael; MaKinster, James; Keating, Thomas

    2004-01-01

    The increased availability of computational modeling software has created opportunities for students to engage in scientific inquiry through constructing computer-based models of scientific phenomena. However, despite the growing trend of integrating technology into science curricula, educators need to understand what aspects of these technologies…

  4. COMMIX-PPC: A three-dimensional transient multicomponent computer program for analyzing performance of power plant condensers. Volume 1, Equations and numerics

    SciTech Connect

    Chien, T.H.; Domanus, H.M.; Sha, W.T.

    1993-02-01

    The COMMIX-PPC computer pregrain is an extended and improved version of earlier COMMIX codes and is specifically designed for evaluating the thermal performance of power plant condensers. The COMMIX codes are general-purpose computer programs for the analysis of fluid flow and heat transfer in complex Industrial systems. In COMMIX-PPC, two major features have been added to previously published COMMIX codes. One feature is the incorporation of one-dimensional equations of conservation of mass, momentum, and energy on the tube stile and the proper accounting for the thermal interaction between shell and tube side through the porous-medium approach. The other added feature is the extension of the three-dimensional conservation equations for shell-side flow to treat the flow of a multicomponent medium. COMMIX-PPC is designed to perform steady-state and transient. Three-dimensional analysis of fluid flow with heat transfer tn a power plant condenser. However, the code is designed in a generalized fashion so that, with some modification, it can be used to analyze processes in any heat exchanger or other single-phase engineering applications. Volume I (Equations and Numerics) of this report describes in detail the basic equations, formulation, solution procedures, and models for a phenomena. Volume II (User`s Guide and Manual) contains the input instruction, flow charts, sample problems, and descriptions of available options and boundary conditions.

  5. Fast generation of three-dimensional computational boundary-conforming periodic grids of C-type. [for turbine blades and propellers

    NASA Technical Reports Server (NTRS)

    Dulikravich, D. S.

    1982-01-01

    A fast computer program, GRID3C, was developed to generate multilevel three dimensional, C type, periodic, boundary conforming grids for the calculation of realistic turbomachinery and propeller flow fields. The technique is based on two analytic functions that conformally map a cascade of semi-infinite slits to a cascade of doubly infinite strips on different Riemann sheets. Up to four consecutively refined three dimensional grids are automatically generated and permanently stored on four different computer tapes. Grid nonorthogonality is introduced by a separate coordinate shearing and stretching performed in each of three coordinate directions. The grids are easily clustered closer to the blade surface, the trailing and leading edges and the hub or shroud regions by changing appropriate input parameters. Hub and duct (or outer free boundary) have different axisymmetric shapes. A vortex sheet of arbitrary thickness emanating smoothly from the blade trailing edge is generated automatically by GRID3C. Blade cross sectional shape, chord length, twist angle, sweep angle, and dihedral angle can vary in an arbitrary smooth fashion in the spanwise direction.

  6. COMMIX-PPC: A three-dimensional transient multicomponent computer program for analyzing performance of power plant condensers. Volume 2, User`s guide and manual

    SciTech Connect

    Chien, T.H.; Domanus, H.M.; Sha, W.T.

    1993-02-01

    The COMMIX-PPC computer program is an extended and improved version of earlier COMMIX codes and is specifically designed for evaluating the thermal performance of power plant condensers. The COMMIX codes are general-purpose computer programs for the analysis of fluid flow and heat transfer in complex industrial systems. In COMMIX-PPC, two major features have been added to previously published COMMIX codes. One feature is the incorporation of one-dimensional conservation of mass. momentum, and energy equations on the tube side, and the proper accounting for the thermal interaction between shell and tube side through the porous medium approach. The other added feature is the extension of the three-dimensional conservation equations for shell-side flow to treat the flow of a multicomponent medium. COMMIX-PPC is designed to perform steady-state and transient three-dimensional analysis of fluid flow with heat transfer in a power plant condenser. However, the code is designed in a generalized fashion so that, with some modification. it can be used to analyze processes in any heat exchanger or other single-phase engineering applications.

  7. Using synchrotron radiation inline phase-contrast imaging computed tomography to visualize three-dimensional printed hybrid constructs for cartilage tissue engineering.

    PubMed

    Olubamiji, Adeola D; Izadifar, Zohreh; Zhu, Ning; Chang, Tuanjie; Chen, Xiongbiao; Eames, B Frank

    2016-05-01

    Synchrotron radiation inline phase-contrast imaging combined with computed tomography (SR-inline-PCI-CT) offers great potential for non-invasive characterization and three-dimensional visualization of fine features in weakly absorbing materials and tissues. For cartilage tissue engineering, the biomaterials and any associated cartilage extracellular matrix (ECM) that is secreted over time are difficult to image using conventional absorption-based imaging techniques. For example, three-dimensional printed polycaprolactone (PCL)/alginate/cell hybrid constructs have low, but different, refractive indices and thicknesses. This paper presents a study on the optimization and utilization of inline-PCI-CT for visualizing the components of three-dimensional printed PCL/alginate/cell hybrid constructs for cartilage tissue engineering. First, histological analysis using Alcian blue staining and immunofluorescent staining assessed the secretion of sulfated glycosaminoglycan (GAGs) and collagen type II (Col2) in the cell-laden hybrid constructs over time. Second, optimization of inline PCI-CT was performed by investigating three sample-to-detector distances (SDD): 0.25, 1 and 3 m. Then, the optimal SDD was utilized to visualize structural changes in the constructs over a 42-day culture period. The results showed that there was progressive secretion of cartilage-specific ECM by ATDC5 cells in the hybrid constructs over time. An SDD of 3 m provided edge-enhancement fringes that enabled simultaneous visualization of all components of hybrid constructs in aqueous solution. Structural changes that might reflect formation of ECM also were evident in SR-inline-PCI-CT images. Summarily, SR-inline-PCI-CT images captured at the optimized SDD enables visualization of the different components in hybrid cartilage constructs over a 42-day culture period. PMID:27140161

  8. Development of Three-dimensional Virtual Plant Vibration Simulator on Grid Computing Environment ITBL-IS/AEGIS

    NASA Astrophysics Data System (ADS)

    Suzuki, Yoshio; Nishida, Akemi; Araya, Fumimasa; Kushida, Noriyuki; Akutsu, Taku; Teshima, Naoya; Nakajima, Kohei; Kondo, Makoto; Hayashi, Sachiko; Aoyagi, Tetsuo; Nakajima, Norihiro

    Center for computational science and e-systems of Japan Atomic Energy Agency is carrying out R&D in the area of extra large-scale simulation technologies for solving nuclear plant structures in its entirety. Specifically, we focus on establishing a virtual plant vibration simulator on inter-connected supercomputers intended for seismic response analysis of a whole nuclear plant. The simulation of a whole plant is a very difficult task because an extremely large dataset must be processed. To overcome this difficulty, we have proposed and implemented a necessary simulation framework and computing platform. The computing platform enables an extra large-scale whole nuclear plant simulation to be carried out on a grid computing platform called ITBL-IS, Information Technology Based Laboratory Infrastructure and AEGIS, Atomic Energy Grid Infrastructure. The simulation framework based on the computing platform has been applied to a linear elastic analysis of the reactor pressure vessel and cooling systems of the nuclear research facility, HTTR. The simulation framework opens a possibility of new simulation technologies for building a whole virtual nuclear plant in computers for virtual experiments.

  9. An unusual case of thoracic ectopia cordis in a Toggenburg Goat and its three-dimensional images constructed with X-ray computed tomography.

    PubMed

    Lai, Jyh-Mirn; Wu, Jui-Te; Yang, Wei-Cheng; Chao, Ming-Hsin; Nagahata, Hajime

    2016-05-01

    A two-day-old female Toggenburg goat with thoracic ectopia cordis (EC) was diagnosed via radiography and computed tomography. The goat was born with EC, defects of the sternum and a supra-umbilical abdominal wall, but without the presence of Cantrell's syndrome. Necropsy and histopathological findings indicated the affected kid had malformation of the heart with an enlarged left ventricle. The findings showed the heart (9 x 5 x 5 cm) stayed outside the thorax, and was covered by a semitransparent membrane. This report is the first to describe a case of thoracic EC in a goat whose sternum was not developed fully and was not connected to the ribs. It is also the first paper to describe three-dimensional images of this condition constructed from computed tomography scans. PMID:27506092

  10. Turbulent structures in wall-bounded shear flows observed via three-dimensional numerical simulators. [using the Illiac 4 computer

    NASA Technical Reports Server (NTRS)

    Leonard, A.

    1980-01-01

    Three recent simulations of tubulent shear flow bounded by a wall using the Illiac computer are reported. These are: (1) vibrating-ribbon experiments; (2) study of the evolution of a spot-like disturbance in a laminar boundary layer; and (3) investigation of turbulent channel flow. A number of persistent flow structures were observed, including streamwise and vertical vorticity distributions near the wall, low-speed and high-speed streaks, and local regions of intense vertical velocity. The role of these structures in, for example, the growth or maintenance of turbulence is discussed. The problem of representing the large range of turbulent scales in a computer simulation is also discussed.

  11. Computation of three-dimensional vortex flows past wings using the EULER Equations and a multiple-grid scheme

    NASA Astrophysics Data System (ADS)

    Koeck, Ch.; Chattot, J. J.

    A numerical method for solving the EULER Equations is presented, which is well suited to the computation or flows containing strong shock waves, and complex vortex structures. The EULER equations system is written in a pseudo-unsteady form, with constant total enthalpy ; it is integrated step by step in time with the explicit finite-volume scheme of Ron-Ho NI. Convergence speeding-up is achieved using NI's multiple-grid procedure. The farfield boundary conditions are treated with the compatibility relations technique. The computed examples presented concern the ONERA-M6 wing, and a sharp leading-edged delta wing, the DILLNER wing.

  12. Utilization of high resolution computed tomography to visualize the three dimensional structure and function of plant vasculature

    Technology Transfer Automated Retrieval System (TEKTRAN)

    High resolution x-ray computed tomography (HRCT) is a non-destructive diagnostic imaging technique with sub-micron resolution capability that is now being used to evaluate the structure and function of plant xylem network in three dimensions (3D). HRCT imaging is based on the same principles as medi...

  13. Introductory Molecular Orbital Theory: An Honors General Chemistry Computational Lab as Implemented Using Three-Dimensional Modeling Software

    ERIC Educational Resources Information Center

    Ruddick, Kristie R.; Parrill, Abby L.; Petersen, Richard L.

    2012-01-01

    In this study, a computational molecular orbital theory experiment was implemented in a first-semester honors general chemistry course. Students used the GAMESS (General Atomic and Molecular Electronic Structure System) quantum mechanical software (as implemented in ChemBio3D) to optimize the geometry for various small molecules. Extended Huckel…

  14. Effect of therapeutic insoles on the medial longitudinal arch in patients with flatfoot deformity: a three-dimensional loading computed tomography study

    PubMed Central

    Kido, Masamitsu; Ikoma, Kazuya; Hara, Yusuke; Imai, Kan; Maki, Masahiro; Ikeda, Takumi; Fujiwara, Hiroyoshi; Tokunaga, Daisaku; Inoue, Nozomu; Kubo, Toshikazu

    2014-01-01

    Background Insoles are frequently used in orthotic therapy as the standard conservative treatment for symptomatic flatfoot deformity to rebuild the arch and stabilize the foot. However, the effectiveness of therapeutic insoles remains unclear. In this study, we assessed the effectiveness of therapeutic insoles for flatfoot deformity using subject-based three-dimensional (3D) computed tomography (CT) models by evaluating the load responses of the bones in the medial longitudinal arch in vivo in 3D. Methods We studied eight individuals (16 feet) with mild flatfoot deformity. CT scans were performed on both feet under non-loaded and full-body-loaded conditions, first with accessory insoles and then with therapeutic insoles under the same conditions. Three-dimensional CT models were constructed for the tibia and the tarsal and metatarsal bones of the medial longitudinal arch (i.e., first metatarsal bone, cuneiforms, navicular, talus, and calcaneus). The rotational angles between the tarsal bones were calculated under loading with accessory insoles or therapeutic insoles and compared. Findings Compared with the accessory insoles, the therapeutic insoles significantly suppressed the eversion of the talocalcaneal joint. Interpretation This is the first study to precisely verify the usefulness of therapeutic insoles (arch support and inner wedges) in vivo. PMID:25457972

  15. Validation of standardized computer analyses for licensing evaluation/TRITON two-dimensional and three-dimensional models for light water reactor fuel

    SciTech Connect

    Bowman, S. M.; Gill, D. F.

    2006-07-01

    The isotopic depletion capabilities of the new Standardized Computer Analyses for Licensing Evaluation control module TRITON, coupled with ORIGEN-S, were evaluated using spent fuel assays from several commercial light water reactors with both standard and mixed-oxide fuel assemblies. Calculations were performed using the functional modules NEWT and KENO-VI. NEWT is a two-dimensional, arbitrary-geometry, discrete-ordinates transport code, and KENO-VI is a three-dimensional Monte Carlo transport code capable of handling complex three-dimensional geometries. To validate the codes and data used in depletion calculations, numerical predictions were compared with experimental measurements for a total of 29 samples taken from the Calvert Cliffs, Obrigheim, and San Onofre pressurized water reactors and the Gundremmingen boiling water reactor. Similar comparisons have previously been performed at the Oak Ridge National Laboratory for the one-dimensional SAS2H control module. The SAS2H, TRITON/KENO-VI, and TRITON/NEWT results were compared for corresponding samples. All analyses showed that TRITON/KENO-VI and TRITON/NEWT produced typically similar or better results than SAS2H. The calculations performed in this validation study demonstrate that the depletion capabilities of TRITON accurately model spent fuel depletion and decay. (authors)

  16. A computer program to calculate the resistivity and induced polarization response for a three-dimensional body in the presence of buried electrodes

    USGS Publications Warehouse

    Daniels, Jeffrey J.

    1977-01-01

    Three-dimensional induced polarization and resistivity modeling for buried electrode configurations can be achieved by adapting surface integral techniques for surface electrode configurations to buried electrodes. Modification of. the surface technique is accomplished by considering the additional mathematical terms required to express-the changes in the electrical potential and geometry caused by placing the source and receiver electrodes below the surface. This report presents a listing of a computer program to calculate the resistivity and induced polarization response from a three-dimensional body for buried electrode configurations. The program is designed to calculate the response for the following electrode configurations: (1) hole-to-surface array with a buried bipole source and a surface bipole receiver, (2) hole-to-surface array with a buried pole source and a surface bipole receiver, (3) hole-to-hole array with a buried, fixed pole source and a moving bipole receiver, (4) surface-to-hole array with a fixed pole source on the surface and a moving bipole receiver in the borehole, (5) hole-to-hole array with a buried, fixed bipole source and a buried, moving bipole receiver, (6) hole-to-hole array with a buried, moving bipole source and a buried, moving bipole receiver, and (7) single-hole, buried bipole-bipole array. Input and output examples are given for each of the arrays.

  17. Comparison of different fixation methods following sagittal split ramus osteotomies using three-dimensional finite elements analysis. Part 1: advancement surgery-posterior loading.

    PubMed

    Erkmen, E; Simşek, B; Yücel, E; Kurt, A

    2005-07-01

    The purpose of this study was to evaluate the mechanical behavior of different fixation methods used in bilateral sagittal split ramus osteotomy (BSSRO). Part 1 comprises of the results of the analysis for mandibular advancement, four different fixation configurations of six hole fragmentation mini plates with monocortical screws and lag screws and posterior loading conditions in the molar and premolar region. The finite element analysis method (FEA) appears suitable for simulating complex mechanical stress situations in the maxillofacial region. The mechanical behavior of selected lag screws with linear or triangular configuration and double parallel or single oblique six hole mini plates with monocortical screws were compared by FEA after 5 mm BSSRO advancement procedure. Four separate three-dimensional finite element models of the mandible were created to simulate the BSSRO and corresponding fixation methods. These models consisted of 122,717 elements and 25,048 nodes. The mechanical parameters of the materials studied were adopted from the literature or were based on manufacturer's information. 500 N posterior occlusal loads were simulated on the distal segments. The commercial finite element solver MSC Marc software was utilized to calculate the stress fields on both the segments and fixative appliances. It was concluded that the use of 2.0mm lag screws placed in a triangular configuration following the BSSRO advancement surgery provides sufficient stability with any rotational movement and less stress fields at the osteotomy site, when compared with the other rigid fixation methods used in the current study. PMID:16053877

  18. Parallel Three-Dimensional Computation of Fluid Dynamics and Fluid-Structure Interactions of Ram-Air Parachutes

    NASA Technical Reports Server (NTRS)

    Tezduyar, Tayfun E.

    1998-01-01

    This is a final report as far as our work at University of Minnesota is concerned. The report describes our research progress and accomplishments in development of high performance computing methods and tools for 3D finite element computation of aerodynamic characteristics and fluid-structure interactions (FSI) arising in airdrop systems, namely ram-air parachutes and round parachutes. This class of simulations involves complex geometries, flexible structural components, deforming fluid domains, and unsteady flow patterns. The key components of our simulation toolkit are a stabilized finite element flow solver, a nonlinear structural dynamics solver, an automatic mesh moving scheme, and an interface between the fluid and structural solvers; all of these have been developed within a parallel message-passing paradigm.

  19. Creation and application of three-dimensional computer-graphic animations for introduction to radiological physics and technology.

    PubMed

    Hasegawa, Tomoyuki; Kojima, Haruna; Masu, Chisato; Fukushima, Yasuhiro; Kojima, Hironori; Konokawa, Kiminori; Isobe, Tomonori; Sato, Eisuke; Murayama, Hideo; Maruyama, Koichi; Umeda, Tokuo

    2010-01-01

    Physics-related subjects are important in the educational fields of radiological physics and technology. However, conventional teaching tools, for example texts, equations, and two-dimensional figures, are not very effective in attracting the interest of students. Therefore, we have created several multimedia educational materials covering radiological physics and technology. Each educational presentation includes several segments of high-quality computer-graphic animations designed to attract students' interest. We used personal computers (PCs) and commercial software to create and compile these. Undergraduate and graduate students and teachers and related professionals contributed to the design and creation of the educational materials as part of student research. The educational materials can be displayed on a PC monitor and manipulated with popular free software. Opinion surveys conducted in undergraduate courses at Kitasato University support the effectiveness of our educational tools in helping students gain a better understanding of the subjects offered and in raising their interest. PMID:20821095

  20. Creation and application of three-dimensional computer-graphic animations for introduction to radiological physics and technology.

    PubMed

    Hasegawa, Tomoyuki; Kojima, Haruna; Masu, Chisato; Fukushima, Yasuhiro; Kojima, Hironori; Konokawa, Kiminori; Isobe, Tomonori; Sato, Eisuke; Murayama, Hideo; Maruyama, Koichi; Umeda, Tokuo

    2010-01-01

    Physics-related subjects are important in the educational fields of radiological physics and technology. However, conventional teaching tools, for example texts, equations, and two-dimensional figures, are not very effective in attracting the interest of students. Therefore, we have created several multimedia educational materials covering radiological physics and technology. Each educational presentation includes several segments of high-quality computer-graphic animations designed to attract students' interest. We used personal computers (PCs) and commercial software to create and compile these. Undergraduate and graduate students and teachers and related professionals contributed to the design and creation of the educational materials as part of student research. The educational materials can be displayed on a PC monitor and manipulated with popular free software. Opinion surveys conducted in undergraduate courses at Kitasato University support the effectiveness of our educational tools in helping students gain a better understanding of the subjects offered and in raising their interest.

  1. Three-dimensional conformal radiotherapy for locally advanced (Stage II and worse) head-and-neck cancer: Dosimetric and clinical evaluation

    SciTech Connect

    Portaluri, Maurizio . E-mail: portaluri@hotmail.com; Fucilli, Fulvio I.M.; Castagna, Roberta; Bambace, Santa; Pili, Giorgio; Tramacere, Francesco; Russo, Donatella; Francavilla, Maria Carmen

    2006-11-15

    Purpose: To evaluate the dosimetric parameters of three-dimensional conformal radiotherapy (3D-CRT) in locally advanced head-and-neck tumors (Stage II and above) and the effects on xerostomia. Methods and Materials: A total of 49 patients with histologically proven squamous cell cancer of the head and neck were consecutively treated with 3D-CRT using a one-point setup technique; 17 had larynx cancer, 12 oropharynx, 12 oral cavity, and 6 nasopharynx cancer; 2 had other sites of cancer. Of the 49 patients, 41 received postoperative RT and 8 definitive treatment. Also, 13 were treated with cisplatin-based chemotherapy before and during RT; in 6 cases, 5-fluorouracil was added. The follow-up time was 484-567 days (median, 530 days). Results: One-point setup can deliver 96% of the prescribed dose to the isocenter, to the whole planning target volume, including all node levels of the neck and without overdosages. The mean dose to the primary planning target volume was 49.54 {+-} 4.82 Gy (51.53 {+-} 5.47 Gy for larynx cases). The average dose to the contralateral parotid gland was approximately 38 Gy (30 Gy for larynx cases). The maximal dose to the spinal cord was 46 Gy. A Grade 0 Radiation Therapy Oncology Group/European Organization for Research and Treatment of Cancer xerostomia score corresponded to a mean dose of 30 Gy to one parotid gland. A lower xerostomia score with a lower mean parotid dose and longer follow-up seemed to give rise to a sort of functional recovery phenomenon. Conclusion: Three dimensional-CRT in head-and-neck cancers permits good coverage of the planning target volume with about 10-11 segments and one isocenter. With a mean dose of approximately 30 Gy to the contralateral parotid, we observed no or mild xerostomia.

  2. A fully implicit domain decomposition based ALE framework for three-dimensional fluid-structure interaction with application in blood flow computation

    NASA Astrophysics Data System (ADS)

    Wu, Yuqi; Cai, Xiao-Chuan

    2014-02-01

    Due to the rapid advancement of supercomputing hardware, there is a growing interest in parallel algorithms for modeling the full three-dimensional interaction between the blood flow and the arterial wall. In [4], Barker and Cai developed a parallel framework for solving fluid-structure interaction problems in two dimensions. In this paper, we extend the idea to three dimensions. We introduce and study a parallel scalable domain decomposition method for solving nonlinear monolithically coupled systems arising from the discretization of the coupled system in an arbitrary Lagrangian-Eulerian framework with a fully implicit stabilized finite element method. The investigation focuses on the robustness and parallel scalability of the Newton-Krylov algorithm preconditioned with an overlapping additive Schwarz method. We validate the proposed approach and report the parallel performance for some patient-specific pulmonary artery problems. The algorithm is shown to be scalable with a large number of processors and for problems with millions of unknowns.

  3. Facial three-dimensional morphometry.

    PubMed

    Ferrario, V F; Sforza, C; Poggio, C E; Serrao, G

    1996-01-01

    Three-dimensional facial morphometry was investigated in a sample of 40 men and 40 women, with a new noninvasive computerized method. Subjects ranged in age between 19 and 32 years, had sound dentitions, and no craniocervical disorders. For each subject, 16 cutaneous facial landmarks were automatically collected by a system consisting of two infrared camera coupled device (CCD) cameras, real time hardware for the recognition of markers, and software for the three-dimensional reconstruction of landmarks' x, y, z coordinates. From these landmarks, 15 linear and 10 angular measurements, and four linear distance ratios were computed and averaged for sex. For all angular values, both samples showed a narrow variability and no significant gender differences were demonstrated. Conversely, all the linear measurements were significantly higher in men than in women. The highest intersample variability was observed for the measurements of facial height (prevalent vertical dimension), and the lowest for the measurements of facial depth (prevalent horizontal dimension). The proportions of upper and lower face height relative to the anterior face height showed a significant sex difference. Mean values were in good agreement with literature data collected with traditional methods. The described method allowed the direct and noninvasive calculation of three-dimensional linear and angular measurements that would be usefully applied in clinics as a supplement to the classic x-ray cephalometric analyses. PMID:8540488

  4. Three-dimensional X-ray micro-computed tomography analysis of polymerization shrinkage vectors in flowable composite.

    PubMed

    Takemura, Yukihiko; Hanaoka, Koji; Kawamata, Ryota; Sakurai, Takashi; Teranaka, Toshio

    2014-01-01

    The polymerization shrinkage of flowable resin composites was evaluated using air bubbles as traceable markers. Three different surface treatments i.e. an adhesive silane coupling agent, a separating silane coupling agent, and a combination of both, were applied to standard cavities. Before and after polymerization, X-ray micro-computed tomography images were recorded. Their superimposition and comparison allowed position changes of the markers to be visualized as vectors. The movement of the markers in the resin composite was, therefore, quantitatively evaluated from the tomographic images. Adhesion was found to significantly influence shrinkage patterns. The method used here could be employed to visualize shrinkage vectors and shrinkage volume. PMID:24988881

  5. Three dimensional compressible turbulent flow computations for a diffusing S-duct with/without vortex generators

    NASA Astrophysics Data System (ADS)

    Cho, Soo Yong

    1993-01-01

    Numerical investigations on a diffusing S-duct with/without vortex generators and a straight duct with vortex generators are presented. The investigation consists of solving the full 3-D unsteady compressible mass averaged Navier-Stokes equations. An implicit finite volume lower-upper time marching code (RPLUS3D) has been employed and modified. A 3-D Baldwin-Lomax turbulence model has been modified in conjunction with the flow physics. A model for the analysis of vortex generators in a fully viscous subsonic internal flow is evaluated. A vortical structure for modeling the shed vortex is used as a source term in the computation domain. The injected vortex paths in the straight duct are compared with the analysis by two kinds of prediction models. The flow structures by the vortex generators are investigated along the duct. Computed results of the flow in a circular diffusing S-duct provide an understanding of the flow structure within a typical engine inlet system. These are compared with the experimental wall static-pressure, static-, and total-pressure field, and secondary velocity profiles. Additionally, boundary layer thickness, skin friction values, and velocity profiles in wall coordinates are presented. In order to investigate The effect of vortex generators, various vortex strengths are examined. The total-pressure recovery and distortion coefficients are obtained at the exit of the S-duct. The numerical results clearly depict the interaction between the low velocity flow by the flow separation and the injected vortices.

  6. An efficient computational approach to characterize DSC-MRI signals arising from three-dimensional heterogeneous tissue structures.

    PubMed

    Semmineh, Natenael B; Xu, Junzhong; Boxerman, Jerrold L; Delaney, Gary W; Cleary, Paul W; Gore, John C; Quarles, C Chad

    2014-01-01

    The systematic investigation of susceptibility-induced contrast in MRI is important to better interpret the influence of microvascular and microcellular morphology on DSC-MRI derived perfusion data. Recently, a novel computational approach called the Finite Perturber Method (FPM), which enables the study of susceptibility-induced contrast in MRI arising from arbitrary microvascular morphologies in 3D has been developed. However, the FPM has lower efficiency in simulating water diffusion especially for complex tissues. In this work, an improved computational approach that combines the FPM with a matrix-based finite difference method (FDM), which we call the Finite Perturber the Finite Difference Method (FPFDM), has been developed in order to efficiently investigate the influence of vascular and extravascular morphological features on susceptibility-induced transverse relaxation. The current work provides a framework for better interpreting how DSC-MRI data depend on various phenomena, including contrast agent leakage in cancerous tissues and water diffusion rates. In addition, we illustrate using simulated and micro-CT extracted tissue structures the improved FPFDM along with its potential applications and limitations.

  7. K-FIX(GT): A computer program for modeling the expansion phase of steam explosions within complex three dimensional cavities

    SciTech Connect

    Hyder, M.L.; Farawila, Y.M.; Abdel-Khalik, S.I.; Halvorson, P.J.

    1992-05-01

    In the development of the Severe Accident Analysis Program for the Savannah River production reactors, it was recognized that certain accidents have the potential for causing damaging steam explosions. The massive SRS reactor buildings are likely to withstand any imaginable steam explosion. However, reactor components and building structures including hatches, ventilation ducts, etc., could be at risk if such an explosion occurred. No tools were available to estimate the effects of such explosions on actual structures. To meet this need, the Savannah River Laboratory contracted with the Georgia Institute of Technology Research Institute for development of a computer-based calculational tool for estimating the effects of steam explosions. The goal for this study was to develop a computer code that could be used parametrically to predict the effects of various steam explosions on their surroundings. This would be able to predict whether a steam explosion of a given magnitude would be likely to fail a particular structure. This would require, of course, that the magnitude of the explosion be specified through some combination of judgment and calculation. The requested code, identified as the K-FIX(GT) code, was developed and delivered by the contractor, along with extensive documentation. The several individual reports that constitute the documentation are each being issued as a separate WSRC report. Documentation includes several model calculations, and representation of these in graphic form. This report gives detailed instructions for the use of the code, including identification of all input parameters required.

  8. Numerical Study for the Three-Dimensional Rayleigh Taylor Instability through the TVD/AC Scheme and Parallel Computation

    NASA Astrophysics Data System (ADS)

    Li, X. L.; Jin, B. X.; Glimm, J.

    1996-07-01

    The Rayleigh-Taylor instability is a gravity driven instability of a contact surface between fluids of different densities. The growth of this instability is sensitive to numerical or physical mass diffusion. For this reason, high resolution of the contact discontinuity is particularly important. In this paper, we address this problem using a second-order TVD finite difference scheme with artificial compression. We describe our numerical simulations of the 3D Rayleigh-Taylor instability using this scheme. The numerical solutions are compared to (a) the exact 2D solution in the linear regime and (b) numerical solutions using the TVD scheme and the front tracking method. The computational program is used to study the evolution of a single bubble and 3D bubble merger, i.e., the nonlinear evolution of a single mode and the process of nonlinear mode-mode interaction.

  9. Rotational and Translational Components of Motion Parallax: Observers' Sensitivity and Implications for Three-Dimensional Computer Graphics

    NASA Technical Reports Server (NTRS)

    Kaiser, Mary K.; Montegut, Michael J.; Proffitt, Dennis R.

    1995-01-01

    The motion of objects during motion parallax can be decomposed into 2 observer-relative components: translation and rotation. The depth ratio of objects in the visual field is specified by the inverse ratio of their angular displacement (from translation) or equivalently by the inverse ratio of their rotations. Despite the equal mathematical status of these 2 information sources, it was predicted that observers would be far more sensitive to the translational than rotational component. Such a differential sensitivity is implicitly assumed by the computer graphics technique billboarding, in which 3-dimensional (3-D) objects are drawn as planar forms (i.e., billboards) maintained normal to the line of sight. In 3 experiments, observers were found to be consistently less sensitive to rotational anomalies. The implications of these findings for kinetic depth effect displays and billboarding techniques are discussed.

  10. Field enhancement and resonance phenomena in complex three-dimensional nanoparticles: efficient computation using the source-model technique.

    PubMed

    Ishay, Yakir; Leviatan, Yehuda; Bartal, Guy

    2014-05-15

    We present a semi-analytical method for computing the electromagnetic field in and around 3D nanoparticles (NP) of complex shape and demonstrate its power via concrete examples of plasmonic NPs that have nonsymmetrical shapes and surface areas with very small radii of curvature. In particular, we show the three axial resonances of a 3D cashew-nut and the broadband response of peanut-shell NPs. The method employs the source-model technique along with a newly developed intricate source distributing algorithm based on the surface curvature. The method is simple and can outperform finite-difference time domain and finite-element-based software tools in both its efficiency and accuracy. PMID:24978226

  11. Computation of three-dimensional compressible boundary layers to fourth-order accuracy on wings and fuselages

    NASA Technical Reports Server (NTRS)

    Iyer, Venkit

    1990-01-01

    A solution method, fourth-order accurate in the body-normal direction and second-order accurate in the stream surface directions, to solve the compressible 3-D boundary layer equations is presented. The transformation used, the discretization details, and the solution procedure are described. Ten validation cases of varying complexity are presented and results of calculation given. The results range from subsonic flow to supersonic flow and involve 2-D or 3-D geometries. Applications to laminar flow past wing and fuselage-type bodies are discussed. An interface procedure is used to solve the surface Euler equations with the inviscid flow pressure field as the input to assure accurate boundary conditions at the boundary layer edge. Complete details of the computer program used and information necessary to run each of the test cases are given in the Appendix.

  12. Further development of a method for computing three-dimensional subsonic viscous flows in turbofan lobe mixers

    NASA Technical Reports Server (NTRS)

    Lin, S. J.; Kreskovsky, J. P.; Briley, W. R.; Mcdonald, H.

    1983-01-01

    Procedure for computing subsonic, turbulent flow in turbofan lobe mixers was extended to allow consideration of flow fields in which a swirl component of velocity may be present. Additional, an optional k-lambda turbulence model was added to the procedure. The method of specifying the initial flow field was also modified, allowing parametric specification or radial secondary flow velocities, and making it possible to consider initial flow fields which have significant inlet secondary flow vorticity. A series of example calculations was performed which demonstrate the various capabilities of the modified code. These calculations demonstrate the effects of initial secondary flows of various magnitudes, the effects of swirl, and the effects of turbulence model on the mixing process. The results of these calculations indicate that the initial secondary flows, presumed to be generated within the lobes, play a dominant role in the mixing process, and that the predicted results are relatively insensitive to the turbulence model used.

  13. User's guide to SEAWAT; a computer program for simulation of three-dimensional variable-density ground-water flow

    USGS Publications Warehouse

    Guo, Weixing; Langevin, C.D.

    2002-01-01

    This report documents a computer program (SEAWAT) that simulates variable-density, transient, ground-water flow in three dimensions. The source code for SEAWAT was developed by combining MODFLOW and MT3DMS into a single program that solves the coupled flow and solute-transport equations. The SEAWAT code follows a modular structure, and thus, new capabilities can be added with only minor modifications to the main program. SEAWAT reads and writes standard MODFLOW and MT3DMS data sets, although some extra input may be required for some SEAWAT simulations. This means that many of the existing pre- and post-processors can be used to create input data sets and analyze simulation results. Users familiar with MODFLOW and MT3DMS should have little difficulty applying SEAWAT to problems of variable-density ground-water flow.

  14. Using a three-dimensional computer assisted stone volume estimates to evaluate extracorporeal shockwave lithotripsy treatment of kidney stones.

    PubMed

    Bigum, Lene Hyldgaard; Ulriksen, Peter Sommer; Omar, Omar Salah

    2016-10-01

    This study describes and evaluates the use of non-contrast enhanced computerized tomography (NCCT) before and after extracorporeal shockwave lithotripsy (SWL). Computer measured stone volume was used as an exact measurement for treatment response. 81 patients received SWL of kidney stones at Herlev Hospital between April 2013 and January 2014 and follow-up was possible in 77 (95 %) patients. NCCT was used before and after treatment. Treatment response was expressed as a reduction of the stone volume. Stone characteristics as the stone volumes, HU, SSD and localization were measured by radiologist using a vendor non-specific computer program. Complications, patient characteristics and additional treatment were registered. On average, 5858 shocks were given each patient. The follow-up NCCT was performed 24 days after treatment. It was possible to calculate the stone volume in 88 % of the patients-the remaining 12 % it was not possible due to stone disintegration. The stone free rate was 22 %. The average relative reduction in stone burden was 62 %. Only 8 % of the patients were radiological non-responders. Steinstrasse was observed in 13 (17 %) and 28 (36 %) patients had additional treatment performed. Irradiation dose per NCCT was 2.6 mSv. Stone volume could be calculated in most patients. The relative reduction in stone burden after treatment was 62 %. The stone volume was redundant when evaluating stone free patients, but in cases of partial response it gave an exact quantification, to be used in the further management and follow-up of the patients.

  15. Using a three-dimensional computer assisted stone volume estimates to evaluate extracorporeal shockwave lithotripsy treatment of kidney stones.

    PubMed

    Bigum, Lene Hyldgaard; Ulriksen, Peter Sommer; Omar, Omar Salah

    2016-10-01

    This study describes and evaluates the use of non-contrast enhanced computerized tomography (NCCT) before and after extracorporeal shockwave lithotripsy (SWL). Computer measured stone volume was used as an exact measurement for treatment response. 81 patients received SWL of kidney stones at Herlev Hospital between April 2013 and January 2014 and follow-up was possible in 77 (95 %) patients. NCCT was used before and after treatment. Treatment response was expressed as a reduction of the stone volume. Stone characteristics as the stone volumes, HU, SSD and localization were measured by radiologist using a vendor non-specific computer program. Complications, patient characteristics and additional treatment were registered. On average, 5858 shocks were given each patient. The follow-up NCCT was performed 24 days after treatment. It was possible to calculate the stone volume in 88 % of the patients-the remaining 12 % it was not possible due to stone disintegration. The stone free rate was 22 %. The average relative reduction in stone burden was 62 %. Only 8 % of the patients were radiological non-responders. Steinstrasse was observed in 13 (17 %) and 28 (36 %) patients had additional treatment performed. Irradiation dose per NCCT was 2.6 mSv. Stone volume could be calculated in most patients. The relative reduction in stone burden after treatment was 62 %. The stone volume was redundant when evaluating stone free patients, but in cases of partial response it gave an exact quantification, to be used in the further management and follow-up of the patients. PMID:26914829

  16. A three-dimensional computational fluid dynamics model of shear stress distribution during neotissue growth in a perfusion bioreactor.

    PubMed

    Guyot, Y; Luyten, F P; Schrooten, J; Papantoniou, I; Geris, L

    2015-12-01

    Bone tissue engineering strategies use flow through perfusion bioreactors to apply mechanical stimuli to cells seeded on porous scaffolds. Cells grow on the scaffold surface but also by bridging the scaffold pores leading a fully filled scaffold following the scaffold's geometric characteristics. Current computational fluid dynamic approaches for tissue engineering bioreactor systems have been mostly carried out for empty scaffolds. The effect of 3D cell growth and extracellular matrix formation (termed in this study as neotissue growth), on its surrounding fluid flow field is a challenge yet to be tackled. In this work a combined approach was followed linking curvature driven cell growth to fluid dynamics modeling. The level-set method (LSM) was employed to capture neotissue growth driven by curvature, while the Stokes and Darcy equations, combined in the Brinkman equation, provided information regarding the distribution of the shear stress profile at the neotissue/medium interface and within the neotissue itself during growth. The neotissue was assumed to be micro-porous allowing flow through its structure while at the same time allowing the simulation of complete scaffold filling without numerical convergence issues. The results show a significant difference in the amplitude of shear stress for cells located within the micro-porous neo-tissue or at the neotissue/medium interface, demonstrating the importance of taking along the neotissue in the calculation of the mechanical stimulation of cells during culture.The presented computational framework is used on different scaffold pore geometries demonstrating its potential to be used a design as tool for scaffold architecture taking into account the growing neotissue. Biotechnol. Bioeng. 2015;112: 2591-2600. © 2015 Wiley Periodicals, Inc.

  17. A three-dimensional computational fluid dynamics model of shear stress distribution during neotissue growth in a perfusion bioreactor.

    PubMed

    Guyot, Y; Luyten, F P; Schrooten, J; Papantoniou, I; Geris, L

    2015-12-01

    Bone tissue engineering strategies use flow through perfusion bioreactors to apply mechanical stimuli to cells seeded on porous scaffolds. Cells grow on the scaffold surface but also by bridging the scaffold pores leading a fully filled scaffold following the scaffold's geometric characteristics. Current computational fluid dynamic approaches for tissue engineering bioreactor systems have been mostly carried out for empty scaffolds. The effect of 3D cell growth and extracellular matrix formation (termed in this study as neotissue growth), on its surrounding fluid flow field is a challenge yet to be tackled. In this work a combined approach was followed linking curvature driven cell growth to fluid dynamics modeling. The level-set method (LSM) was employed to capture neotissue growth driven by curvature, while the Stokes and Darcy equations, combined in the Brinkman equation, provided information regarding the distribution of the shear stress profile at the neotissue/medium interface and within the neotissue itself during growth. The neotissue was assumed to be micro-porous allowing flow through its structure while at the same time allowing the simulation of complete scaffold filling without numerical convergence issues. The results show a significant difference in the amplitude of shear stress for cells located within the micro-porous neo-tissue or at the neotissue/medium interface, demonstrating the importance of taking along the neotissue in the calculation of the mechanical stimulation of cells during culture.The presented computational framework is used on different scaffold pore geometries demonstrating its potential to be used a design as tool for scaffold architecture taking into account the growing neotissue. Biotechnol. Bioeng. 2015;112: 2591-2600. © 2015 Wiley Periodicals, Inc. PMID:26059101

  18. Computer techniques to aid the interpretation of salt bodies and stratigraphy in three-dimensional seismic volumes

    NASA Astrophysics Data System (ADS)

    Hammon, William S., III

    The life cycle of a seismic data volume can be broken into three parts: acquisition, processing, and interpretation. Accomplishing each of these steps requires the application of a different set of skills and techniques to accomplish. Of the three, data acquisition and processing are the most expensive steps to perform. Data acquisition is a time and equipment intensive operation. Processing the seismic data, after acquisition, is a computationally very expensive procedure; usually performed on very large computer clusters. However, the most time consuming of these steps is the interpretation of the seismic data. Arguably, this is also the least optimized part of the volume life cycle, as certain aspects of interpretation are still performed largely by hand. Efficiency gains are ongoing in the fields of seismic acquisition and processing (especially migration). Initial steps have also been made in the semi-automation of interpretation, but much work remains to be done. Semi-automatic interpretation holds the greatest promise for quickly improving the value of the seismic volume acquisition and utilization cycle. This dissertation concentrates on the development of new techniques to aid the human interpreter in their interpretation of 3D seismic volumes. The ability to both accelerate and improve interpretation of geology in a data volume is a significant goal for increasing the value realized from a given data set. Particular attention is given to two of the more intractable problems in seismic data interpretation: salt-body delineation, and the interpretation of stratigraphic features. The difficulties inherent in each task are different, but both tasks are quite time consuming when performed largely by hand. This dissertation is comprised of five parts. Part 1 describes Voxel Density, a novel volume processing technique that can be used to filter, or improve the contrast in a data set. This technique uses the local persistence of features in the data set to

  19. High-resolution three-dimensional scanning transmission electron microscopy characterization of oxide-nitride-oxide layer interfaces in Si-based semiconductors using computed tomography.

    PubMed

    Sadayama, Shoji; Sekiguchi, Hiromi; Bright, Alexander; Suzuki, Naohisa; Yamada, Kazuhiro; Kaneko, Kenji

    2011-01-01

    Oxide-nitride-oxide (ONO) layer structures are widely used for charge storage in flash memory devices. The ONO layer interfaces should be as flat as possible, so measurement of the nanoscale roughness of those interfaces is needed. In this study, quantification of an ONO film from a commercially available flash memory device was carried out with a pillar-shaped specimen using scanning transmission electron microscopy (STEM) and computed tomography. The ONO area contained only low Z- and low STEM-contrast materials, which makes high-quality reconstruction difficult. The optimum three-dimensional reconstruction was achieved with an STEM annular dark-field detector inner collection angle of 32 mrad, a sample tilt range from -78° to +78° and 25 iterations for the simultaneous iterative reconstruction technique.

  20. Three-dimensional metamaterials

    DOEpatents

    Burckel, David Bruce

    2012-06-12

    A fabrication method is capable of creating canonical metamaterial structures arrayed in a three-dimensional geometry. The method uses a membrane suspended over a cavity with predefined pattern as a directional evaporation mask. Metallic and/or dielectric material can be evaporated at high vacuum through the patterned membrane to deposit resonator structures on the interior walls of the cavity, thereby providing a unit cell of micron-scale dimension. The method can produce volumetric metamaterial structures comprising layers of such unit cells of resonator structures.

  1. Three-dimensional computation for flow-induced vibrations of an upstream circular cylinder in two tandem circular cylinders

    NASA Astrophysics Data System (ADS)

    Kondo, Norio

    2014-07-01

    It is well known from a lot of experimental data that fluid forces acting on two tandem circular cylinders are quite different from those acting on a single circular cylinder. Therefore, we first present numerical results for fluid forces acting on two tandem circular cylinders, which are mounted at various spacings in a smooth flow, and second we present numerical results for flow-induced vibrations of the upstream circular cylinder in the tandem arrangement. The two circular cylinders are arranged at close spacing in a flow field. The upstream circular cylinder is elastically placed by damper-spring systems and moves in both the in-line and cross-flow directions. In such models, each circular cylinder is assumed as a rigid body. On the other hand, we do not introduce a turbulent model such as the Large Eddy Simulation (LES) or Reynolds Averaged Navier-Stokes (RANS) models into the numerical scheme to compute the fluid flow. Our numerical procedure to capture the flow-induced vibration phenomena of the upstream circular cylinder is treated as a fluid-structure interaction problem in which the ideas of weak coupling is taken into consideration.

  2. Three-dimensional imaging of human hippocampal tissue using synchrotron radiation- and grating-based micro computed tomography

    NASA Astrophysics Data System (ADS)

    Hieber, Simone E.; Khimchenko, Anna; Kelly, Christopher; Mariani, Luigi; Thalmann, Peter; Schulz, Georg; Schmitz, Rüdiger; Greving, Imke; Dominietto, Marco; Müller, Bert

    2014-09-01

    Hippocampal sclerosis is a common cause of epilepsy, whereby a neuronal cell loss of more than 50% cells is characteristic. If medication fails the best possible treatment is the extraction of the diseased organ. To analyze the microanatomy of the diseased tissue we scanned a human hippocampus extracted from an epilepsy patient. After the identification of degenerated tissue using magnetic resonance imaging the specimen was reduced in size to fit into a cylindrical container with a diameter of 6 mm. Using synchrotron radiation and grating interferometry we acquired micro computed tomography datasets of the specimen. The present study was one of the first successful phase tomography measurements at the imaging beamline P05 (operated by HZG at the PETRA III storage ring, DESY, Hamburg, Germany). Ring and streak artefacts were reduced by enhanced flat-field corrections, combined wavelet-Fourier filters and bilateral filtering. We improved the flat-field correction by the consideration of the correlation between the projections and the flat-field images. In the present study, the correlation that was based on mean squared differences and evaluated on manually determined reference regions leads to the best artefact reduction. A preliminary segmentation of the abnormal tissue reveals that a clinically relevant study requires the development of even more sophisticated artifact reduction tools or a phase contrast measurement of higher quality.

  3. Three Dimensional Dirac Semimetals

    NASA Astrophysics Data System (ADS)

    Zaheer, Saad

    2014-03-01

    Dirac points on the Fermi surface of two dimensional graphene are responsible for its unique electronic behavior. One can ask whether any three dimensional materials support similar pseudorelativistic physics in their bulk electronic spectra. This possibility has been investigated theoretically and is now supported by two successful experimental demonstrations reported during the last year. In this talk, I will summarize the various ways in which Dirac semimetals can be realized in three dimensions with primary focus on a specific theory developed on the basis of representations of crystal spacegroups. A three dimensional Dirac (Weyl) semimetal can appear in the presence (absence) of inversion symmetry by tuning parameters to the phase boundary separating a bulk insulating and a topological insulating phase. More generally, we find that specific rules governing crystal symmetry representations of electrons with spin lead to robust Dirac points at high symmetry points in the Brillouin zone. Combining these rules with microscopic considerations identifies six candidate Dirac semimetals. Another method towards engineering Dirac semimetals involves combining crystal symmetry and band inversion. Several candidate materials have been proposed utilizing this mechanism and one of the candidates has been successfully demonstrated as a Dirac semimetal in two independent experiments. Work carried out in collaboration with: Julia A. Steinberg, Steve M. Young, J.C.Y. Teo, C.L. Kane, E.J. Mele and Andrew M. Rappe.

  4. On-Line Use of Three-Dimensional Marker Trajectory Estimation From Cone-Beam Computed Tomography Projections for Precise Setup in Radiotherapy for Targets With Respiratory Motion

    SciTech Connect

    Worm, Esben S.; Hoyer, Morten; Fledelius, Walther; Nielsen, Jens E.; Larsen, Lars P.; Poulsen, Per R.

    2012-05-01

    Purpose: To develop and evaluate accurate and objective on-line patient setup based on a novel semiautomatic technique in which three-dimensional marker trajectories were estimated from two-dimensional cone-beam computed tomography (CBCT) projections. Methods and Materials: Seven treatment courses of stereotactic body radiotherapy for liver tumors were delivered in 21 fractions in total to 6 patients by a linear accelerator. Each patient had two to three gold markers implanted close to the tumors. Before treatment, a CBCT scan with approximately 675 two-dimensional projections was acquired during a full gantry rotation. The marker positions were segmented in each projection. From this, the three-dimensional marker trajectories were estimated using a probability based method. The required couch shifts for patient setup were calculated from the mean marker positions along the trajectories. A motion phantom moving with known tumor trajectories was used to examine the accuracy of the method. Trajectory-based setup was retrospectively used off-line for the first five treatment courses (15 fractions) and on-line for the last two treatment courses (6 fractions). Automatic marker segmentation was compared with manual segmentation. The trajectory-based setup was compared with setup based on conventional CBCT guidance on the markers (first 15 fractions). Results: Phantom measurements showed that trajectory-based estimation of the mean marker position was accurate within 0.3 mm. The on-line trajectory-based patient setup was performed within approximately 5 minutes. The automatic marker segmentation agreed with manual segmentation within 0.36 {+-} 0.50 pixels (mean {+-} SD; pixel size, 0.26 mm in isocenter). The accuracy of conventional volumetric CBCT guidance was compromised by motion smearing ({<=}21 mm) that induced an absolute three-dimensional setup error of 1.6 {+-} 0.9 mm (maximum, 3.2) relative to trajectory-based setup. Conclusions: The first on-line clinical use of

  5. Recent developments in three-dimensional numerical estuarine models

    USGS Publications Warehouse

    Cheng, Ralph T.; Smith, Peter E.; Casulli, Vincenzo

    1993-01-01

    For a fixed cost, computing power increases 5 to 10 times every five years. The readily available computing resources have inspired new modal formulations and innovative model applications. Significant progress has been advanced in three-dimensional numerical estuarine modeling within the past three or four years. This paper attempts to review and summarize properties of new 3-D estuarine hydrodynamic models. The emphasis of the review is placed on the formulation, numerical methods. The emphasis of the review is placed on the formulation, numerical methods, spatial and temporal resolution, computational efficiency, and turbulence closure of new models. Recent research has provided guidelines for the proper use of 3-D models involving in the σ-transformation. Other models resort to a fixed level discretization in the vertical. The semi-implicit treatment in time-stepping models appears to have gained momentum. Future research in three-dimensional numerical modeling remains to be on computational efficiency and turbulent closure.

  6. A Preliminary Three-Dimensional Analysis of Nasal Aesthetics Following Le Fort I Advancement in Patients With Cleft Lip and Palate.

    PubMed

    Davidson, Edward; Kumar, Anand R

    2015-10-01

    Nasal aesthetic changes after cleft orthognathic surgery remain understudied. Previous scarring associated with prior cleft surgery may affect the predictability of outcomes after jaw surgery. This study evaluates changes in nasal aesthetics using three-dimensional photography after Le Fort I advancement in patients with nonsyndromic cleft-related maxillary hypoplasia. Cephalometric parameters were recorded pre- and postoperatively. Three-dimensional photogrammetric imaging analyzed changes in interalar width (IAW), internostril width (INW), nasal tip projection (NTP), collumelar length (CL), nasal labial angle (NLA), and nasal length (NL). Statistical significance between pre- and postoperative data was determined using T-tests for each parameter. Eleven patients underwent either single piece Le Fort I osteotomy and advancement, (3 bilateral, 4 unilateral cleft lip, and palate), or 2-piece advancement (2 bilateral, 2 unilateral). Average nasal soft tissue changes were IAW 1.9 mm (0.4-4.2), INW -0.2 mm (-2.8 to 1.6), NTP -1.0 mm (-4.0 to 2.0), CL -0.7 mm (-2.9 to 1.5), NLA -0.2° (-13.9 to 15.1), and NL -0.7 mm (-4.3 to 1.5), (P = 0.001, 0.6, 0.08, 0.01, 0.9, 0.2). For single-piece osteotomy alone changes were IAW 2.1 mm (0.6-4.1), INW -0.6 mm (-2.8 to 1.7), NTP -1.9 mm (-4.0 to 0.3), CL -1.2 mm (-2.9 to 0.03), NLA -1.3° (-13.9 to 15.0), and NL -1.1 mm (-4.3 to 0.7), (P = 0.007, 0.3, 0.009, 0.0002, 0.7, 0.2). For 2-piece osteotomy alone changes were IAW 1.6 mm (-0.4 to 3.3), INW 0.5 mm (0.4-1.6), NTP 0.5 mm (-1.1-2.0), CL 0.2 mm (-1.4 to 1.5), NLA 2.8° (-7.6 to 10.1), and NL -0.1 mm (-1.4 to 1.5), (P = 0.2, 0.4, 0.5, 0.6, 0.5, 0.9). Cleft-related scarring and malposition affect changes in nasal aesthetics following maxillary advancement that are different to the noncleft population. Two-piece Le Fort I increases variability of changes in nasal aesthetics compared with single-piece advancement.

  7. Monitoring the response to neoadjuvant hormone therapy for locally advanced breast cancer using three-dimensional time-resolved optical mammography

    NASA Astrophysics Data System (ADS)

    Enfield, Louise; Cantanhede, Gabriel; Douek, Michael; Ramalingam, Vernie; Purushotham, Arnie; Hebden, Jem; Gibson, Adam

    2013-05-01

    Optical mammography is a functional imaging technique that uses near-infrared light to produce three-dimensional breast images of tissue oxygen saturation and hemoglobin concentration. It has been used to monitor the response to neoadjuvant chemotherapy in breast cancer patients. We present the first results on monitoring tumor response to hormone therapy using optical mammography. We present three case studies from postmenopausal women treated with neoadjuvant hormone therapy for locally advanced breast cancer. The women were scanned before starting treatment, once during treatment, and then before surgery. Changes in physiological and optical properties within the tumor and in the rest of the breast were evaluated. At the time of surgery, two patients partially responded to treatment and one did not respond. The patients that partially responded on ultrasound revealed a corresponding recovery to normal in the hemoglobin concentration images, whereas the nonresponder indicated an increase in hemoglobin concentration in the tumor compared to her pretreatment images. These case studies suggest that optical imaging of the breast during neoadjuvant hormone treatment can provide potentially valuable information, and that physiological changes within the tumor can be seen in response to treatment.

  8. A novel integration of three-dimensional electro-Fenton and biological activated carbon and its application in the advanced treatment of biologically pretreated Lurgi coal gasification wastewater.

    PubMed

    Hou, Baolin; Han, Hongjun; Zhuang, Haifeng; Xu, Peng; Jia, Shengyong; Li, Kun

    2015-11-01

    A novel integrated process with three-dimensional electro-Fenton (3D EF) and biological activated carbon (BAC) was employed in advanced treatment of biologically pretreated Lurgi coal gasification wastewater. SAC-Fe (sludge deserved activated carbon from sewage and iron sludge) and SAC (sludge deserved activated carbon) were used in 3D EF as catalytic particle electrodes (CPEs) and in BAC as carriers respectively. Results indicated that 3D EF with SAC-Fe as CPEs represented excellent pollutants and COLOR removals as well as biodegradability improvement. The efficiency enhancement attributed to generating more H2O2 and OH. The integrated process exhibited efficient performance of COD, BOD5, total phenols, TOC, TN and COLOR removals at a much shorter retention time, with the corresponding concentrations in effluent of 31.18, 6.69, 4.29, 17.82, 13.88mg/L and <20 times, allowing discharge criteria to be met. The integrated system was efficient, cost-effective and ecological sustainable and could be a promising technology for engineering applications.

  9. A mathematical model and computational framework for three-dimensional chondrocyte cell growth in a porous tissue scaffold placed inside a bi-directional flow perfusion bioreactor.

    PubMed

    Shakhawath Hossain, Md; Bergstrom, D J; Chen, X B

    2015-12-01

    The in vitro chondrocyte cell culture for cartilage tissue regeneration in a perfusion bioreactor is a complex process. Mathematical modeling and computational simulation can provide important insights into the culture process, which would be helpful for selecting culture conditions to improve the quality of the developed tissue constructs. However, simulation of the cell culture process is a challenging task due to the complicated interaction between the cells and local fluid flow and nutrient transport inside the complex porous scaffolds. In this study, a mathematical model and computational framework has been developed to simulate the three-dimensional (3D) cell growth in a porous scaffold placed inside a bi-directional flow perfusion bioreactor. The model was developed by taking into account the two-way coupling between the cell growth and local flow field and associated glucose concentration, and then used to perform a resolved-scale simulation based on the lattice Boltzmann method (LBM). The simulation predicts the local shear stress, glucose concentration, and 3D cell growth inside the porous scaffold for a period of 30 days of cell culture. The predicted cell growth rate was in good overall agreement with the experimental results available in the literature. This study demonstrates that the bi-directional flow perfusion culture system can enhance the homogeneity of the cell growth inside the scaffold. The model and computational framework developed is capable of providing significant insight into the culture process, thus providing a powerful tool for the design and optimization of the cell culture process.

  10. Three-dimensional printing physiology laboratory technology.

    PubMed

    Sulkin, Matthew S; Widder, Emily; Shao, Connie; Holzem, Katherine M; Gloschat, Christopher; Gutbrod, Sarah R; Efimov, Igor R

    2013-12-01

    Since its inception in 19th-century Germany, the physiology laboratory has been a complex and expensive research enterprise involving experts in various fields of science and engineering. Physiology research has been critically dependent on cutting-edge technological support of mechanical, electrical, optical, and more recently computer engineers. Evolution of modern experimental equipment is constrained by lack of direct communication between the physiological community and industry producing this equipment. Fortunately, recent advances in open source technologies, including three-dimensional printing, open source hardware and software, present an exciting opportunity to bring the design and development of research instrumentation to the end user, i.e., life scientists. Here we provide an overview on how to develop customized, cost-effective experimental equipment for physiology laboratories.

  11. Three-dimensional printing physiology laboratory technology

    PubMed Central

    Sulkin, Matthew S.; Widder, Emily; Shao, Connie; Holzem, Katherine M.; Gloschat, Christopher; Gutbrod, Sarah R.

    2013-01-01

    Since its inception in 19th-century Germany, the physiology laboratory has been a complex and expensive research enterprise involving experts in various fields of science and engineering. Physiology research has been critically dependent on cutting-edge technological support of mechanical, electrical, optical, and more recently computer engineers. Evolution of modern experimental equipment is constrained by lack of direct communication between the physiological community and industry producing this equipment. Fortunately, recent advances in open source technologies, including three-dimensional printing, open source hardware and software, present an exciting opportunity to bring the design and development of research instrumentation to the end user, i.e., life scientists. Here we provide an overview on how to develop customized, cost-effective experimental equipment for physiology laboratories. PMID:24043254

  12. Multiscale modeling of three-dimensional genome

    NASA Astrophysics Data System (ADS)

    Zhang, Bin; Wolynes, Peter

    The genome, the blueprint of life, contains nearly all the information needed to build and maintain an entire organism. A comprehensive understanding of the genome is of paramount interest to human health and will advance progress in many areas, including life sciences, medicine, and biotechnology. The overarching goal of my research is to understand the structure-dynamics-function relationships of the human genome. In this talk, I will be presenting our efforts in moving towards that goal, with a particular emphasis on studying the three-dimensional organization, the structure of the genome with multi-scale approaches. Specifically, I will discuss the reconstruction of genome structures at both interphase and metaphase by making use of data from chromosome conformation capture experiments. Computationally modeling of chromatin fiber at atomistic level from first principles will also be presented as our effort for studying the genome structure from bottom up.

  13. Clinical application of three-dimensional echocardiography.

    PubMed

    Morbach, Caroline; Lin, Ben A; Sugeng, Lissa

    2014-01-01

    Echocardiography is one of the most valuable diagnostic tools in cardiology. Technological advances in ultrasound, computer and electronics enables three-dimensional (3-D) imaging to be a clinically viable modality which has significant impact on diagnosis, management and interventional procedures. Since the inception of 3D fully-sampled matrix transthoracic and transesophageal technology it has enabled easier acquisition, immediate on-line display, and availability of on-line analysis for the left ventricle, right ventricle and mitral valve. The use of 3D TTE has mainly focused on mitral valve disease, left and right ventricular volume and functional analysis. As structural heart disease procedures become more prevalent, 3D TEE has become a requirement for preparation of the procedure, intra-procedural guidance as well as monitoring for complications and device function. We anticipate that there will be further software development, improvement in image quality and workflow.

  14. Computation of three-dimensional turbulent boundary layers with heat transfer in a plane of symmetry using embedded wall-layer functions

    NASA Technical Reports Server (NTRS)

    Degani, A. T.; Walker, J. D. A.

    1990-01-01

    In the calculation of turbulent boundary layers, a large number of mesh points are required to adequately resolve the intense variation in the velocity and enthalpy in the near-wall region. A substantial reduction in computational effort may be realized by representing the velocity and enthalpy profiles in the wall layer by analytical embedded functions. The effectively inviscid flow in the outer part of the boundary layer may then be resolved by employing a relatively coarser mesh. To obtain complete profiles, the outer numerical solution is matched asymptotically to the inner wall-layer analytical solution. To date, this approach has been restricted to two-dimensional flows; in the present study, a method which may be utilized for turbulent boundary layers with heat transfer in a plane of symmetry is developed as a first step in the application of the embedded-function method to full three-dimensional flows. The present method uses only about half as many mesh points as that required in a conventional procedure, which calculates the flow all the way to the wall, but there is no degradation in accuracy of the computed results.

  15. Accuracy of computer-aided geometric three-dimensional reconstruction of the human petrous bone based on serial unstained celloidin sections

    PubMed Central

    WEI, XIAN-FENG; ZHANG, XIAO-YANG; YUAN, WU; LI, YUN-SHENG

    2015-01-01

    The aim of this study was to present a comprehensive three-dimensional (3D) morphology of the petrous bone with computer image-processing technology, which could be beneficial for the teaching of anatomy and for surgical procedures. The unstained celloidin sections of human temporal bone were digitized with high resolution and quality, and then processed with Amira® software to include alignment, segmentation and reconstruction. The integral structure of the human inner ear was presented with computer modeling, including the petrous bone, bone labyrinth, internal carotid artery canal, internal jugular vein canal, sigmoid sinus, inferior petrosal sinus, glossopharyngeal meatus, vagal meatus, internal acoustic meatus, facial nerve canal, greater superficial petrosal nerve, vestibular aqueduct, extraosseous portion of the endolymphatic sac, round and oval window, processus cochleariformis and pyramidal eminence. The 3D model showed detailed structure of the external and internal petrous bone, as well as their spatial relationship. The present study suggests the feasibility of comprehensive 3D reconstruction of the petrous bone using unstained celloidin sections, which may provide advantages for future study. PMID:25780396

  16. Micro-computed tomography: a method for the non-destructive evaluation of the three-dimensional structure of biological specimens.

    PubMed

    Stauber, Martin; Müller, Ralph

    2008-01-01

    The large increase in interest in micro-computed tomography (micro-CT) over the last decade reflects the+ need for a method able to non-destructively visualize the internal three-dimensional structure of an object. Thereby, the real beauty of computed tomography lies in the fact that it is available for a large range of nominal resolutions, which allows hierarchical imaging from whole bodies down to the tissue level. Although micro-CT is currently mainly used for imaging of hard tissue (i.e., bone and tooth), future developments might also allow high soft tissue contrast either using appropriate contrast agents or x-ray contrast mechanisms. This chapter aims to review the steps necessary for a successful micro-CT measurement. Although the actual measurement is often machine dependent, the chapter does not describe a specific system but rather lists all steps that eventually have to be considered to set up a measurement, run the measurement, process the image data, and get morphometric indices as a result. The chapter provides an easy understandable manual that should allow newcomers to perform successful measurements and hence to best profit from this powerful technique.

  17. MESA meets MURaM. Surface effects in main-sequence solar-like oscillators computed using three-dimensional radiation hydrodynamics simulations

    NASA Astrophysics Data System (ADS)

    Ball, W. H.; Beeck, B.; Cameron, R. H.; Gizon, L.

    2016-08-01

    Context. Space-based observations of solar-like oscillators have identified large numbers of stars in which many individual mode frequencies can be precisely measured. However, current stellar models predict oscillation frequencies that are systematically affected by simplified modelling of the near-surface layers. Aims: We use three-dimensional radiation hydrodynamics simulations to better model the near-surface equilibrium structure of dwarfs with spectral types F3, G2, K0 and K5, and examine the differences between oscillation mode frequencies computed in stellar models with and without the improved near-surface equilibrium structure. Methods: We precisely match stellar models to the simulations' gravities and effective temperatures at the surface, and to the temporally- and horizontally-averaged densities and pressures at their deepest points. We then replace the near-surface structure with that of the averaged simulation and compute the change in the oscillation mode frequencies. We also fit the differences using several parametric models currently available in the literature. Results: The surface effect in the stars of solar-type and later is qualitatively similar and changes steadily with decreasing effective temperature. In particular, the point of greatest frequency difference decreases slightly as a fraction of the acoustic cut-off frequency and the overall scale of the surface effect decreases. The surface effect in the hot, F3-type star follows the same trend in scale (i.e. it is larger in magnitude) but shows a different overall variation with mode frequency. We find that a two-term fit using the cube and inverse of the frequency divided by the mode inertia is best able to reproduce the surface terms across all four spectral types, although the scaled solar term and a modified Lorentzian function also match the three cooler simulations reasonably well. Conclusions: Three-dimensional radiation hydrodynamics simulations of near-surface convection can be

  18. Three dimensional ultrasonic imaging

    SciTech Connect

    Thomas, G. H.; Benson, S.; Crawford, S.

    1993-03-01

    Ultrasonic nondestructive evaluation techniques interrogate components with high frequency acoustic energy. A transducer generates the acoustic energy and converts acoustic energy to electrical signals. The acoustic energy is reflected by abrupt changes in modulus and/or density which can be caused by a defect. Thus defects reflect the ultrasonic energy which is converted into electrical signals. Ultrasonic evaluation typically provides a two dimensional image of internal defects. These images are either planar views (C-scans) or cross-sectional views (B-scans). The planar view is generated by raster scanning an ultrasonic transducer over the component and capturing the amplitude of internal reflections. Depth information is generally ignored. The cross-sectional view is generated by scanning the transducer along a single line and capturing the amplitude and time of flight for each internal reflection. The amplitude and time of flight information is converted into an image of the cross section of the component where the scan was performed. By fusing the C-scan information with the B-scan information a three dimension image of the internal structure of the component can be produced. The three dimensional image can be manipulated by rotating and slicing to produce the optimal view of the internal structure. The high frequency ultrasonic energy requires a liquid coupling media and thus applications for imaging in liquid environments are well suited to ultrasonic techniques. Examples of potential ultrasonic imaging applications are: Inside liquid filled tanks, inside the human body, and underwater.

  19. Using the Bi-Orthogonal Decomposition framework to compute the three dimensional Empirical Orthogonal Functions of stratospheric planetary waves from time correlation matrices

    NASA Astrophysics Data System (ADS)

    Rolland, Joran; Domeisen, Daniela I. V.

    2016-04-01

    Many geophysical waves in the atmosphere or in the ocean have a three dimensional structure and contain a range of scales. This is for instance the case of planetary waves in the stratosphere connected to baroclinic eddies in the troposphere [1]. In the study of such waves from reanalysis data or output of numerical simulations, Empirical Orthogonal Functions (EOF) obtained as a Proper Orthogonal Decomposition of the data sets have been of great help. However, most of these computations rely on the diagonalisation of space correlation matrices: this means that the considered data set can only have a limited number of gridpoints. The main consequence is that such analyses are often only performed in planes (as function of height and latitude, or longitude and latitude for instance), which makes the educing of the three dimensional structure of the wave quite difficult. In the case of the afore mentionned waves, the matter of the longitudinal dependence or the proper correlation between modes through the tropopause is an open question. An elegant manner to circumvent this problem is to consider the output of the Orthogonal Decomposition as a whole. Indeed, it has been shown that the normalised time series of the amplitude of each EOF, far from just being decorrelated from one another, are actually another set of orthogonal functions. These can actually be computed through the diagonlisation of the time correlation matrix of the data set, just like the EOF were the result of the diagonalisation of the space correlation matrix. The signal is then fully decomposed in the framework of the Bi-Orthogonal Decomposition as the sum of the nth explained variance, time the nth eigenmode of the time correlation times the nth eigenmode of the spacial correlations [2,3]. A practical consequence of this result is that the EOF can be reconstructed from the projection of the dataset onto the eigenmodes of the time correlation matrix in the so-called snapshot method [4]. This is very

  20. Using the Bi-Orthogonal Decomposition framework to compute the three dimensional Empirical Orthogonal Functions of stratospheric planetary waves from time correlation matrices

    NASA Astrophysics Data System (ADS)

    Rolland, Joran; Domeisen, Daniela I. V.

    2016-04-01

    Many geophysical waves in the atmosphere or in the ocean have a three dimensional structure and contain a range of scales. This is for instance the case of planetary waves in the stratosphere connected to baroclinic eddies in the troposphere [1]. In the study of such waves from reanalysis data or output of numerical simulations, Empirical Orthogonal Functions (EOF) obtained as a Proper Orthogonal Decomposition of the data sets have been of great help. However, most of these computations rely on the diagonalisation of space correlation matrices: this means that the considered data set can only have a limited number of gridpoints. The main consequence is that such analyses are often only performed in planes (as function of height and latitude, or longitude and latitude for instance), which makes the educing of the three dimensional structure of the wave quite difficult. In the case of the afore mentionned waves, the matter of the longitudinal dependence or the proper correlation between modes through the tropopause is an open question. An elegant manner to circumvent this problem is to consider the output of the Orthogonal Decomposition as a whole. Indeed, it has been shown that the normalised time series of the amplitude of each EOF, far from just being decorrelated from one another, are actually another set of orthogonal functions. These can actually be computed through the diagonlisation of the time correlation matrix of the data set, just like the EOF were the result of the diagonalisation of the space correlation matrix. The signal is then fully decomposed in the framework of the Bi-Orthogonal Decomposition as the sum of the nth explained variance, time the nth eigenmode of the time correlation times the nth eigenmode of the spacial correlations [2,3]. A practical consequence of this result is that the EOF can be reconstructed from the projection of the dataset onto the eigenmodes of the time correlation matrix in the so-called snapshot method [4]. This is very

  1. RAMONA-4B a computer code with three-dimensional neutron kinetics for BWR and SBWR system transient - models and correlations

    SciTech Connect

    Rohatgi, U.S.; Cheng, H.S.; Khan, H.J.; Mallen, A.N.; Neymotin, L.Y.

    1998-03-01

    This document describes the major modifications and improvements made to the modeling of the RAMONA-3B/MOD0 code since 1981, when the code description and assessment report was completed. The new version of the code is RAMONA-4B. RAMONA-4B is a systems transient code for application to different versions of Boiling Water Reactors (BWR) such as the current BWR, the Advanced Boiling Water Reactor (ABWR), and the Simplified Boiling Water Reactor (SBWR). This code uses a three-dimensional neutron kinetics model coupled with a multichannel, non-equilibrium, drift-flux, two-phase flow formulation of the thermal hydraulics of the reactor vessel. The code is designed to analyze a wide spectrum of BWR core and system transients and instability issues. Chapter 1 is an overview of the code`s capabilities and limitations; Chapter 2 discusses the neutron kinetics modeling and the implementation of reactivity edits. Chapter 3 is an overview of the heat conduction calculations. Chapter 4 presents modifications to the thermal-hydraulics model of the vessel, recirculation loop, steam separators, boron transport, and SBWR specific components. Chapter 5 describes modeling of the plant control and safety systems. Chapter 6 presents and modeling of Balance of Plant (BOP). Chapter 7 describes the mechanistic containment model in the code. The content of this report is complementary to the RAMONA-3B code description and assessment document. 53 refs., 81 figs., 13 tabs.

  2. Quasi-Cartesian Finite-Difference Computation of Seismic Wave Propagation for a Three-Dimensional Sub-global Earth Model

    NASA Astrophysics Data System (ADS)

    Takenaka, H.; Komatsu, M.; Toyokuni, G.; Nakamura, T.; Okamoto, T.

    2015-12-01

    A simple and efficient finite-difference scheme is developed to compute seismic wave propagation for a partial spherical shell model of a three-dimensionally (3-D) heterogeneous global earth structure. This new scheme solves the elastodynamic equations in the "quasi-Cartesian" coordinate system similar to a local Cartesian one, instead of the spherical coordinate system, with a staggered-grid finite-difference method in time domain (FDTD) which is one of the most popular numerical methods in seismic motion simulations for local to regional scale models. The proposed scheme may be useful for modeling seismic wave propagation in a very large region of sub-global scale beyond regional and less than global ones, where the effects of roundness of earth cannot be ignored. In "quasi-Cartesian" coordinates, x, y, and z are set to be locally in directions of latitude, longitude and depth, respectively. The stencil for each of the x-derivatives then depends on the depth coordinate at the evaluation point, while the stencil for each of the y-derivatives varies with both coordinates of the depth and latitude. In order to reduce lateral variations of the horizontal finite-difference stencils over the computational domain, we move the target area to a location around the equator of the computational spherical coordinate system using a way similar to the conversion from equatorial coordinates to ecliptic coordinates. The developed scheme can be easily implemented in 3-D Cartesian FDTD codes for local to regional scale modeling by changing a very small part of the codes. Our scheme may be able to open a window for multi-scale modeling of seismic wave propagation in scales from sub-global to local one.

  3. The location of midfacial landmarks according to the method of establishing the midsagittal reference plane in three-dimensional computed tomography analysis of facial asymmetry

    PubMed Central

    Kim, Min Sun; Lee, Eun Joo; Song, In Ja; Lee, Jae-Seo; Kang, Byung-Cheol

    2015-01-01

    Purpose The purpose of this study was to evaluate the influence of methods of establishing the midsagittal reference plane (MRP) on the locations of midfacial landmarks in the three-dimensional computed tomography (CT) analysis of facial asymmetry. Materials and Methods A total of 24 patients (12 male and 12 female; mean age, 22.5 years; age range, 18.2-29.7 years) with facial asymmetry were included in this study. The MRP was established using two different methods on each patient's CT image. The x-coordinates of four midfacial landmarks (the menton, nasion, upper incisor, and lower incisor) were obtained by measuring the distance and direction of the landmarks from the MRP, and the two methods were compared statistically. The direction of deviation and the severity of asymmetry found using each method were also compared. Results The x-coordinates of the four anatomic landmarks all showed a statistically significant difference between the two methods of establishing the MRP. For the nasion and lower incisor, six patients (25.0%) showed a change in the direction of deviation. The severity of asymmetry also changed in 16 patients (66.7%). Conclusion The results of this study suggest that the locations of midfacial landmarks change significantly according to the method used to establish the MRP. PMID:26730370

  4. Computation of dynamic seismic responses to viscous fluid of digitized three-dimensional Berea sandstones with a coupled finite-difference method.

    PubMed

    Zhang, Yang; Toksöz, M Nafi

    2012-08-01

    The seismic response of saturated porous rocks is studied numerically using microtomographic images of three-dimensional digitized Berea sandstones. A stress-strain calculation is employed to compute the velocities and attenuations of rock samples whose sizes are much smaller than the seismic wavelength of interest. To compensate for the contributions of small cracks lost in the imaging process to the total velocity and attenuation, a hybrid method is developed to recover the crack distribution, in which the differential effective medium theory, the Kuster-Toksöz model, and a modified squirt-flow model are utilized in a two-step Monte Carlo inversion. In the inversion, the velocities of P- and S-waves measured for the dry and water-saturated cases, and the measured attenuation of P-waves for different fluids are used. By using such a hybrid method, both the velocities of saturated porous rocks and the attenuations are predicted accurately when compared to laboratory data. The hybrid method is a practical way to model numerically the seismic properties of saturated porous rocks until very high resolution digital data are available. Cracks lost in the imaging process are critical for accurately predicting velocities and attenuations of saturated porous rocks. PMID:22894185

  5. Computation of dynamic seismic responses to viscous fluid of digitized three-dimensional Berea sandstones with a coupled finite-difference method.

    PubMed

    Zhang, Yang; Toksöz, M Nafi

    2012-08-01

    The seismic response of saturated porous rocks is studied numerically using microtomographic images of three-dimensional digitized Berea sandstones. A stress-strain calculation is employed to compute the velocities and attenuations of rock samples whose sizes are much smaller than the seismic wavelength of interest. To compensate for the contributions of small cracks lost in the imaging process to the total velocity and attenuation, a hybrid method is developed to recover the crack distribution, in which the differential effective medium theory, the Kuster-Toksöz model, and a modified squirt-flow model are utilized in a two-step Monte Carlo inversion. In the inversion, the velocities of P- and S-waves measured for the dry and water-saturated cases, and the measured attenuation of P-waves for different fluids are used. By using such a hybrid method, both the velocities of saturated porous rocks and the attenuations are predicted accurately when compared to laboratory data. The hybrid method is a practical way to model numerically the seismic properties of saturated porous rocks until very high resolution digital data are available. Cracks lost in the imaging process are critical for accurately predicting velocities and attenuations of saturated porous rocks.

  6. Use of cone-beam computed tomography and three-dimensional modeling for assessment of anomalous pulp canal configuration: a case report

    PubMed Central

    Helvacioglu-Yigit, Dilek; Mutlu, Ibrahim

    2015-01-01

    Three-dimensional (3D) reconstruction of cone-beam computed tomography (CBCT) scans appears to be a valuable method for assessing pulp canal configuration. The aim of this report is to describe endodontic treatment of a mandibular second premolar with aberrant pulp canal morphology detected by CBCT and confirmed by 3D modeling. An accessory canal was suspected during endodontic treatment of the mandibular left second premolar in a 21 year old woman with a chief complaint of pulsating pain. Axial cross-sectional CBCT scans revealed that the pulp canal divided into mesiobuccal, lingual, and buccal canals in the middle third and ended as four separate foramina. 3D modeling confirmed the anomalous configuration of the fused root with a deep lingual groove. Endodontic treatment of the tooth was completed in two appointments. The root canals were obturated using lateral compaction of gutta-percha and root canal sealer. The tooth remained asymptomatic and did not develop periapical pathology until 12 months postoperatively. CBCT and 3D modeling enable preoperative evaluation of aberrant root canal systems and facilitate endodontic treatment. PMID:25984479

  7. Three-dimensional visualization of the microvasculature of bile duct ligation-induced liver fibrosis in rats by x-ray phase-contrast imaging computed tomography

    NASA Astrophysics Data System (ADS)

    Xuan, Ruijiao; Zhao, Xinyan; Hu, Doudou; Jian, Jianbo; Wang, Tailing; Hu, Chunhong

    2015-07-01

    X-ray phase-contrast imaging (PCI) can substantially enhance contrast, and is particularly useful in differentiating biological soft tissues with small density differences. Combined with computed tomography (CT), PCI-CT enables the acquisition of accurate microstructures inside biological samples. In this study, liver microvasculature was visualized without contrast agents in vitro with PCI-CT using liver fibrosis samples induced by bile duct ligation (BDL) in rats. The histological section examination confirmed the correspondence of CT images with the microvascular morphology of the samples. By means of the PCI-CT and three-dimensional (3D) visualization technique, 3D microvascular structures in samples from different stages of liver fibrosis were clearly revealed. Different types of blood vessels, including portal veins and hepatic veins, in addition to ductular proliferation and bile ducts, could be distinguished with good sensitivity, excellent specificity and excellent accuracy. The study showed that PCI-CT could assess the morphological changes in liver microvasculature that result from fibrosis and allow characterization of the anatomical and pathological features of the microvasculature. With further development of PCI-CT technique, it may become a novel noninvasive imaging technique for the auxiliary analysis of liver fibrosis.

  8. Three-dimensional spiral computed tomographic cysto-urethrography for post-traumatic complex posterior urethral strictures associated with urethral-rectal fistula.

    PubMed

    Sa, Ying Long; Xu, Yue Min; Feng, Chao; Ye, Xu Xiao; Song, Lu Jie

    2013-01-01

    To evaluate the value of three-dimensional spiral computed tomography/cysto-urethrography (CTCUG) in diagnosing posterior urethral strictures associated with urethrorectal fistulas (URF). Between June 2008 and March 2012, 38 patients with posterior urethral strictures associated with URFs were examined by CTCUG, retrograde urethrography (RUG) and cysto-urethrography (CUG). Urethral reconstruction was undertaken and URFs were surgically repaired in all patients. The length of the urethral defect, location and size of URFs were recorded. Data from radiological examinations were compared with surgical findings. No statistically significant difference was found in the length of stricture measured using CTCUG (4.31 ± 2.28 cm) or conventional urethrography (4.02 ± 3.12 cm; p > 0.05), However, the accuracy in determining the location of the stricture was higher with CTCUG (93.12%) than with conventional urethrography (70.59%; p < 0.05). CTCUG identified URFs in all 38 patients (100%), whereas URFs were only observed in 27 patients (71%) using conventional urethrography. In conclusion, CTCUG was more accurate, safer and provided more details of URFs and urethral defects than conventional urethrography in patients with posterior urethral strictures associated with URFs.

  9. Volumetric stability of autogenous bone graft with mandibular body bone: cone-beam computed tomography and three-dimensional reconstruction analysis

    PubMed Central

    Lee, Hyeong-Geun

    2015-01-01

    Objectives The purpose of this study was to estimate the volumetric change of augmented autobone harvested from mandibular body cortical bone, using cone-beam computed tomography (CBCT) and three-dimensional reconstruction. In addition, the clinical success of dental implants placed 4 to 6 months after bone grafting was also evaluated. Materials and Methods Ninety-five patients (48 men and 47 women) aged 19 to 72 years were included in this study. A total of 128 graft sites were evaluated. The graft sites were divided into three parts: anterior and both posterior regions of one jaw. All patients included in the study were scheduled for an onlay graft and implantation using a two-stage procedure. The dental implants were inserted 4 to 6 months after the bone graft. Volumetric stability was evaluated by serial CBCT images. Results No major complications were observed for the donor sites. A total of 128 block bones were used to augment severely resorbed alveolar bone. Only 1 of the 128 bone grafts was resorbed by more than half, and that was due to infection. In total, the average amount of residual grafted bone after resorption at the recipient sites was 74.6%±8.4%. Conclusion Volumetric stability of mandibular body autogenous block grafts is predictable. The procedure is satisfactory for patients who want dental implants regardless of atrophic alveolar bone. PMID:26568924

  10. Distribution and volumetric assessment of initial approximal caries lesions in human premolars and permanent molars using computer-aided three-dimensional reconstruction.

    PubMed

    Arnold, W H; Gaengler, P; Saeuberlich, E

    2000-12-01

    Serial sections from 21 extracted premolars and permanent molars, divided into three age groups (group 1, 10-19 years; group 2, 20-39 years; group 3, 50-69 years.), were viewed by polarized light microscopy for reconstruction of the caries lesions. The volumes of the lesional body and the transparent zone, and the volumes of early dentinal lesions were calculated; and an enamel demineralization index (EDI) and an enamel-dentine demineralization index (EDDI), representing the volumetric ratio of the body of the lesion to the translucent zone, and the body of the lesion to the volume of the early dentinal lesion, respectively, were determined. The method showed that there are three typical sites of individual initial caries lesions at the approximal surface: within the contact area, in the subcontact area, and in the cervical area. Volumetric assessment demonstrated a larger volume of the body of the lesion in older teeth with a smaller volume of the translucent zone relative to the lesional body. From these results it can be concluded that there are usually more than one individual initial caries lesions at the approximal tooth surface. Calculation of demineralization indices demonstrated different features for small lesions with pronounced transparent zones and for large lesions with small transparent zones. The computer-assisted three-dimensional reconstruction technique and the volumetric assessment are of value in investigations of the micromorphology and progression of natural caries lesions in permanent teeth.

  11. Three-dimensional imaging of the aortic valve and aortic root with computed tomography: new standards in an era of transcatheter valve repair/implantation.

    PubMed

    Schoenhagen, Paul; Tuzcu, E Murat; Kapadia, Samir R; Desai, Milind Y; Svensson, Lars G

    2009-09-01

    Valvular heart disease is a significant, global cause of morbidity and mortality. In the ageing population of industrialized nations, degenerative aortic stenosis has become the most common native valve disorder. Although surgical aortic valve replacement is associated with excellent clinical outcomes, a large number of patients with severe aortic stenosis are not considered surgical candidates. These patients have poor prognosis with continued medical therapy. In this population, catheter-based approaches for valve replacement/insertion show promising initial results. In an era of expanding catheter-based approaches to valve disease, the requirements for peri-operative imaging are evolving. Because of the lack of direct exposure during the procedure, the operator has to rely increasingly on imaging data rather than direct inspection. Novel three-dimensional (3D) imaging modalities, including computed tomography, rapidly acquire volumetric data sets and allow subsequent 3D display and reconstruction in unlimited planes. Procedural planning based on 3D imaging has already become routine for other endovascular procedures including aortic stent grafts, but is in its infancy in the context of transcatheter valve insertion.

  12. Three-dimensional visualization of the microvasculature of bile duct ligation-induced liver fibrosis in rats by x-ray phase-contrast imaging computed tomography

    PubMed Central

    Xuan, Ruijiao; Zhao, Xinyan; Hu, Doudou; Jian, Jianbo; Wang, Tailing; Hu, Chunhong

    2015-01-01

    X-ray phase-contrast imaging (PCI) can substantially enhance contrast, and is particularly useful in differentiating biological soft tissues with small density differences. Combined with computed tomography (CT), PCI-CT enables the acquisition of accurate microstructures inside biological samples. In this study, liver microvasculature was visualized without contrast agents in vitro with PCI-CT using liver fibrosis samples induced by bile duct ligation (BDL) in rats. The histological section examination confirmed the correspondence of CT images with the microvascular morphology of the samples. By means of the PCI-CT and three-dimensional (3D) visualization technique, 3D microvascular structures in samples from different stages of liver fibrosis were clearly revealed. Different types of blood vessels, including portal veins and hepatic veins, in addition to ductular proliferation and bile ducts, could be distinguished with good sensitivity, excellent specificity and excellent accuracy. The study showed that PCI-CT could assess the morphological changes in liver microvasculature that result from fibrosis and allow characterization of the anatomical and pathological features of the microvasculature. With further development of PCI-CT technique, it may become a novel noninvasive imaging technique for the auxiliary analysis of liver fibrosis. PMID:26212186

  13. RAMONA-4B a computer code with three-dimensional neutron kinetics for BWR and SBWR system transient - user`s manual

    SciTech Connect

    Rohatgi, U.S.; Cheng, H.S.; Khan, H.J.; Mallen, A.N.; Neymotin, L.Y.

    1998-03-01

    This document is the User`s Manual for the Boiling Water Reactor (BWR), and Simplified Boiling Water Reactor (SBWR) systems transient code RAMONA-4B. The code uses a three-dimensional neutron-kinetics model coupled with a multichannel, nonequilibrium, drift-flux, phase-flow model of the thermal hydraulics of the reactor vessel. The code is designed to analyze a wide spectrum of BWR core and system transients. Chapter 1 gives an overview of the code`s capabilities and limitations; Chapter 2 describes the code`s structure, lists major subroutines, and discusses the computer requirements. Chapter 3 is on code, auxillary codes, and instructions for running RAMONA-4B on Sun SPARC and IBM Workstations. Chapter 4 contains component descriptions and detailed card-by-card input instructions. Chapter 5 provides samples of the tabulated output for the steady-state and transient calculations and discusses the plotting procedures for the steady-state and transient calculations. Three appendices contain important user and programmer information: lists of plot variables (Appendix A) listings of input deck for sample problem (Appendix B), and a description of the plotting program PAD (Appendix C). 24 refs., 18 figs., 11 tabs.

  14. Dynamic stability analysis for capillary channel flow: One-dimensional and three-dimensional computations and the equivalent steady state technique

    NASA Astrophysics Data System (ADS)

    Grah, Aleksander; Dreyer, Michael E.

    2010-01-01

    Spacecraft technology provides a series of applications for capillary channel flow. It can serve as a reliable means for positioning and transport of liquids under low gravity conditions. Basically, capillary channels provide liquid paths with one or more free surfaces. A problem may be flow instabilities leading to a collapse of the liquid surfaces. A result is undesired gas ingestion and a two phase flow which can in consequence cause several technical problems. The presented capillary channel consists of parallel plates with two free liquid surfaces. The flow rate is established by a pump at the channel outlet, creating a lower pressure within the channel. Owing to the pressure difference between the liquid phase and the ambient gas phase the free surfaces bend inwards and remain stable as long as they are able to resist the steady and unsteady pressure effects. For the numerical prediction of the flow stability two very different models are used. The one-dimensional unsteady model is mainly based on the Bernoulli equation, the continuity equation, and the Gauss-Laplace equation. For three-dimensional evaluations an open source computational fluid dynamics (CFD) tool is applied. For verifications the numerical results are compared with quasisteady and unsteady data of a sounding rocket experiment. Contrary to previous experiments this one results in a significantly longer observation sequence. Furthermore, the critical point of the steady flow instability could be approached by a quasisteady technique. As in previous experiments the comparison to the numerical model evaluation shows a very good agreement for the movement of the liquid surfaces and for the predicted flow instability. The theoretical prediction of the flow instability is related to the speed index, based on characteristic velocities of the capillary channel flow. Stable flow regimes are defined by stability criteria for steady and unsteady flow. The one-dimensional computation of the speed index

  15. An experimental and three-dimensional computational study on the aerodynamic contribution to the passive pitching motion of flapping wings in hovering flies.

    PubMed

    Ishihara, D; Horie, T; Niho, T

    2014-11-07

    The relative importance of the wing's inertial and aerodynamic forces is the key to revealing how the kinematical characteristics of the passive pitching motion of insect flapping wings are generated, which is still unclear irrespective of its importance in the design of insect-like micro air vehicles. Therefore, we investigate three species of flies in order to reveal this, using a novel fluid-structure interaction analysis that consists of a dynamically scaled experiment and a three-dimensional finite element analysis. In the experiment, the dynamic similarity between the lumped torsional flexibility model as a first approximation of the dipteran wing and the actual insect is measured by the Reynolds number Re, the Strouhal number St, the mass ratio M, and the Cauchy number Ch. In the computation, the three-dimension is important in order to simulate the stable leading edge vortex and lift force in the present Re regime over 254. The drawback of the present experiment is the difficulty in satisfying the condition of M due to the limitation of available solid materials. The novelty of the present analysis is to complement this drawback using the computation. We analyze the following two cases: (a) The equilibrium between the wing's elastic and fluid forces is dynamically similar to that of the actual insect, while the wing's inertial force can be ignored. (b) All forces are dynamically similar to those of the actual insect. From the comparison between the results of cases (a) and (b), we evaluate the contributions of the equilibrium between the aerodynamic and the wing's elastic forces and the wing's inertial force to the passive pitching motion as 80-90% and 10-20%, respectively. It follows from these results that the dipteran passive pitching motion will be based on the equilibrium between the wing's elastic and aerodynamic forces, while it will be enhanced by the wing's inertial force.

  16. An experimental and three-dimensional computational study on the aerodynamic contribution to the passive pitching motion of flapping wings in hovering flies.

    PubMed

    Ishihara, D; Horie, T; Niho, T

    2014-01-01

    The relative importance of the wing's inertial and aerodynamic forces is the key to revealing how the kinematical characteristics of the passive pitching motion of insect flapping wings are generated, which is still unclear irrespective of its importance in the design of insect-like micro air vehicles. Therefore, we investigate three species of flies in order to reveal this, using a novel fluid-structure interaction analysis that consists of a dynamically scaled experiment and a three-dimensional finite element analysis. In the experiment, the dynamic similarity between the lumped torsional flexibility model as a first approximation of the dipteran wing and the actual insect is measured by the Reynolds number Re, the Strouhal number St, the mass ratio M, and the Cauchy number Ch. In the computation, the three-dimension is important in order to simulate the stable leading edge vortex and lift force in the present Re regime over 254. The drawback of the present experiment is the difficulty in satisfying the condition of M due to the limitation of available solid materials. The novelty of the present analysis is to complement this drawback using the computation. We analyze the following two cases: (a) The equilibrium between the wing's elastic and fluid forces is dynamically similar to that of the actual insect, while the wing's inertial force can be ignored. (b) All forces are dynamically similar to those of the actual insect. From the comparison between the results of cases (a) and (b), we evaluate the contributions of the equilibrium between the aerodynamic and the wing's elastic forces and the wing's inertial force to the passive pitching motion as 80-90% and 10-20%, respectively. It follows from these results that the dipteran passive pitching motion will be based on the equilibrium between the wing's elastic and aerodynamic forces, while it will be enhanced by the wing's inertial force. PMID:25378268

  17. Use of advanced computers for aerodynamic flow simulation

    NASA Technical Reports Server (NTRS)

    Bailey, F. R.; Ballhaus, W. F.

    1980-01-01

    The current and projected use of advanced computers for large-scale aerodynamic flow simulation applied to engineering design and research is discussed. The design use of mature codes run on conventional, serial computers is compared with the fluid research use of new codes run on parallel and vector computers. The role of flow simulations in design is illustrated by the application of a three dimensional, inviscid, transonic code to the Sabreliner 60 wing redesign. Research computations that include a more complete description of the fluid physics by use of Reynolds averaged Navier-Stokes and large-eddy simulation formulations are also presented. Results of studies for a numerical aerodynamic simulation facility are used to project the feasibility of design applications employing these more advanced three dimensional viscous flow simulations.

  18. Interfaces for Advanced Computing.

    ERIC Educational Resources Information Center

    Foley, James D.

    1987-01-01

    Discusses the coming generation of supercomputers that will have the power to make elaborate "artificial realities" that facilitate user-computer communication. Illustrates these technological advancements with examples of the use of head-mounted monitors which are connected to position and orientation sensors, and gloves that track finger and…

  19. Micro-Computed Tomography-Based Three-Dimensional Kinematic Analysis During Lateral Bending for Spinal Fusion Assessment in a Rat Posterolateral Lumbar Fusion Model

    PubMed Central

    Yamaguchi, Tomonori; Inoue, Nozomu; Sah, Robert L.; Lee, Yu-Po; Taborek, Alexander P.; Williams, Gregory M.; Moseley, Timothy A.; Bae, Won C.

    2014-01-01

    Rat posterolateral lumbar fusion (PLF) models have been used to assess the safety and effectiveness of new bone substitutes and osteoinductive growth factors using palpation, radiography, micro-computed tomography (μCT), and histology as standard methods to evaluate spinal fusion. Despite increased numbers of PLF studies involving alternative bone substitutes and growth factors, the quantitative assessment of treatment efficacy during spinal motion has been limited. The purpose of this study was to evaluate the effect of spinal fusion on lumbar spine segment stability during lateral bending using a μCT-based three-dimensional (3D) kinematic analysis in the rat PLF model. Fourteen athymic male rats underwent PLF surgery at L4/5 and received bone grafts harvested from the ilium and femurs of syngeneic rats (Isograft, n=7) or no graft (Sham, n=7). At 8 weeks after the PLF surgery, spinal fusion was assessed by manual palpation, plain radiography, μCT, and histology. To determine lumbar segmental motions at the operated level during lateral bending, 3D kinematic analysis was performed. The Isograft group, but not the Sham group, showed spinal fusion on manual palpation (6/7), solid fusion mass in radiographs (6/7), as well as bone bridging in μCT and histological images (5/7). Compared to the Sham group, the Isograft group revealed limited 3D lateral bending angular range of motion and lateral translation during lateral bending at the fused segment where disc height narrowing was observed. This μCT-based 3D kinematic analysis can provide a quantitative assessment of spinal fusion in a rat PLF model to complement current gold standard methods used for efficacy assessment of new therapeutic approaches. PMID:24199634

  20. Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data.

    PubMed

    Suresh, Niraj; Stephens, Sean A; Adams, Lexor; Beck, Anthon N; McKinney, Adriana L; Varga, Tamas

    2016-01-01

    Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere, as well as processes with important implications to climate change and crop management. Quantitative size information on roots in their native environment is invaluable for studying root growth and environmental processes involving plants. X-ray computed tomography (XCT) has been demonstrated to be an effective tool for in situ root scanning and analysis. We aimed to develop a costless and efficient tool that approximates the surface and volume of the root regardless of its shape from three-dimensional (3D) tomography data. The root structure of a Prairie dropseed (Sporobolus heterolepis) specimen was imaged using XCT. The root was reconstructed, and the primary root structure was extracted from the data using a combination of licensed and open-source software. An isosurface polygonal mesh was then created for ease of analysis. We have developed the standalone application imeshJ, generated in MATLAB(1), to calculate root volume and surface area from the mesh. The outputs of imeshJ are surface area (in mm(2)) and the volume (in mm(3)). The process, utilizing a unique combination of tools from imaging to quantitative root analysis, is described. A combination of XCT and open-source software proved to be a powerful combination to noninvasively image plant root samples, segment root data, and extract quantitative information from the 3D data. This methodology of processing 3D data should be applicable to other material/sample systems where there is connectivity between components of similar X-ray attenuation and difficulties arise with segmentation. PMID:27168248

  1. Extracting Metrics for Three-dimensional Root Systems: Volume and Surface Analysis from In-soil X-ray Computed Tomography Data.

    PubMed

    Suresh, Niraj; Stephens, Sean A; Adams, Lexor; Beck, Anthon N; McKinney, Adriana L; Varga, Tamas

    2016-01-01

    Plant roots play a critical role in plant-soil-microbe interactions that occur in the rhizosphere, as well as processes with important implications to climate change and crop management. Quantitative size information on roots in their native environment is invaluable for studying root growth and environmental processes involving plants. X-ray computed tomography (XCT) has been demonstrated to be an effective tool for in situ root scanning and analysis. We aimed to develop a costless and efficient tool that approximates the surface and volume of the root regardless of its shape from three-dimensional (3D) tomography data. The root structure of a Prairie dropseed (Sporobolus heterolepis) specimen was imaged using XCT. The root was reconstructed, and the primary root structure was extracted from the data using a combination of licensed and open-source software. An isosurface polygonal mesh was then created for ease of analysis. We have developed the standalone application imeshJ, generated in MATLAB(1), to calculate root volume and surface area from the mesh. The outputs of imeshJ are surface area (in mm(2)) and the volume (in mm(3)). The process, utilizing a unique combination of tools from imaging to quantitative root analysis, is described. A combination of XCT and open-source software proved to be a powerful combination to noninvasively image plant root samples, segment root data, and extract quantitative information from the 3D data. This methodology of processing 3D data should be applicable to other material/sample systems where there is connectivity between components of similar X-ray attenuation and difficulties arise with segmentation.

  2. Analysis of the Development of the Nasal Septum and Measurement of the Harvestable Septal Cartilage in Koreans Using Three-Dimensional Facial Bone Computed Tomography Scanning

    PubMed Central

    Kim, Jae Hee; Jung, Dong Ju; Kim, Hyo Seong; Kim, Chang Hyun

    2014-01-01

    Background The septal cartilage is the most useful donor site for autologous cartilage graft material in rhinoplasty. For successful nasal surgery, it is necessary to understand the developmental process of the nasal septum and to predict the amount of harvestable septal cartilage before surgery. Methods One hundred twenty-three Korean patients who underwent three-dimensional (3D) facial bone computed tomography (CT) were selected for evaluation of the midsagittal view of the nasal septum. Multiple parameters such as the area of each component of the nasal septum and the amount of harvestable septal cartilage were measured using Digimizer software. Results The area of the total nasal septum showed rapid growth until the teenage years, but thereafter no significant change throughout the lifetime. However, the development of the septal cartilage showed a gradual decline due to ossification changes with aging after puberty in spite of a lack of change in the total septal area. The area of harvestable septal cartilage in young adults was 549.84±151.26 mm2 and decreased thereafter with age. Conclusions A 3D facial bone CT scan can provide valuable information on the septal cartilage graft before rhinoplasty. Considering the developmental process of the septal cartilage identified in this study, septal surgery should not be performed until puberty due to the risk of nasal growth impairment. Furthermore, in elderly patients who show a decreased cartilage area due to ossification changes, septal cartilage harvesting should be performed carefully due to the risk of saddle nose deformity. PMID:24665426

  3. Imaging the Aqueous Humor Outflow Pathway in Human Eyes by Three-dimensional Micro-computed Tomography (3D micro-CT)

    SciTech Connect

    C Hann; M Bentley; A Vercnocke; E Ritman; M Fautsch

    2011-12-31

    The site of outflow resistance leading to elevated intraocular pressure in primary open-angle glaucoma is believed to be located in the region of Schlemm's canal inner wall endothelium, its basement membrane and the adjacent juxtacanalicular tissue. Evidence also suggests collector channels and intrascleral vessels may have a role in intraocular pressure in both normal and glaucoma eyes. Traditional imaging modalities limit the ability to view both proximal and distal portions of the trabecular outflow pathway as a single unit. In this study, we examined the effectiveness of three-dimensional micro-computed tomography (3D micro-CT) as a potential method to view the trabecular outflow pathway. Two normal human eyes were used: one immersion fixed in 4% paraformaldehyde and one with anterior chamber perfusion at 10 mmHg followed by perfusion fixation in 4% paraformaldehyde/2% glutaraldehyde. Both eyes were postfixed in 1% osmium tetroxide and scanned with 3D micro-CT at 2 {mu}m or 5 {mu}m voxel resolution. In the immersion fixed eye, 24 collector channels were identified with an average orifice size of 27.5 {+-} 5 {mu}m. In comparison, the perfusion fixed eye had 29 collector channels with a mean orifice size of 40.5 {+-} 13 {mu}m. Collector channels were not evenly dispersed around the circumference of the eye. There was no significant difference in the length of Schlemm's canal in the immersed versus the perfused eye (33.2 versus 35.1 mm). Structures, locations and size measurements identified by 3D micro-CT were confirmed by correlative light microscopy. These findings confirm 3D micro-CT can be used effectively for the non-invasive examination of the trabecular meshwork, Schlemm's canal, collector channels and intrascleral vasculature that comprise the distal outflow pathway. This imaging modality will be useful for non-invasive study of the role of the trabecular outflow pathway as a whole unit.

  4. Micro-computed tomography-based three-dimensional kinematic analysis during lateral bending for spinal fusion assessment in a rat posterolateral lumbar fusion model.

    PubMed

    Yamaguchi, Tomonori; Inoue, Nozomu; Sah, Robert L; Lee, Yu-Po; Taborek, Alexander P; Williams, Gregory M; Moseley, Timothy A; Bae, Won C; Masuda, Koichi

    2014-07-01

    Rat posterolateral lumbar fusion (PLF) models have been used to assess the safety and effectiveness of new bone substitutes and osteoinductive growth factors using palpation, radiography, micro-computed tomography (μCT), and histology as standard methods to evaluate spinal fusion. Despite increased numbers of PLF studies involving alternative bone substitutes and growth factors, the quantitative assessment of treatment efficacy during spinal motion has been limited. The purpose of this study was to evaluate the effect of spinal fusion on lumbar spine segment stability during lateral bending using a μCT-based three-dimensional (3D) kinematic analysis in the rat PLF model. Fourteen athymic male rats underwent PLF surgery at L4/5 and received bone grafts harvested from the ilium and femurs of syngeneic rats (Isograft, n=7) or no graft (Sham, n=7). At 8 weeks after the PLF surgery, spinal fusion was assessed by manual palpation, plain radiography, μCT, and histology. To determine lumbar segmental motions at the operated level during lateral bending, 3D kinematic analysis was performed. The Isograft group, but not the Sham group, showed spinal fusion on manual palpation (6/7), solid fusion mass in radiographs (6/7), as well as bone bridging in μCT and histological images (5/7). Compared to the Sham group, the Isograft group revealed limited 3D lateral bending angular range of motion and lateral translation during lateral bending at the fused segment where disc height narrowing was observed. This μCT-based 3D kinematic analysis can provide a quantitative assessment of spinal fusion in a rat PLF model to complement current gold standard methods used for efficacy assessment of new therapeutic approaches.

  5. Using semi-automated segmentation of computed tomography datasets for three-dimensional visualization and volume measurements of equine paranasal sinuses.

    PubMed

    Brinkschulte, Markus; Bienert-Zeit, Astrid; Lüpke, Matthias; Hellige, Maren; Staszyk, Carsten; Ohnesorge, Bernhard

    2013-01-01

    The system of the paranasal sinuses morphologically represents one of the most complex parts of the equine body. A clear understanding of spatial relationships is needed for correct diagnosis and treatment. The purpose of this study was to describe the anatomy and volume of equine paranasal sinuses using three-dimensional (3D) reformatted renderings of computed tomography (CT) slices. Heads of 18 cadaver horses, aged 2-25 years, were analyzed by the use of separate semi-automated segmentation of the following bilateral paranasal sinus compartments: rostral maxillary sinus (Sinus maxillaris rostralis), ventral conchal sinus (Sinus conchae ventralis), caudal maxillary sinus (Sinus maxillaris caudalis), dorsal conchal sinus (Sinus conchae dorsalis), frontal sinus (Sinus frontalis), sphenopalatine sinus (Sinus sphenopalatinus), and middle conchal sinus (Sinus conchae mediae). Reconstructed structures were displayed separately, grouped, or altogether as transparent or solid elements to visualize individual paranasal sinus morphology. The paranasal sinuses appeared to be divided into two systems by the maxillary septum (Septum sinuum maxillarium). The first or rostral system included the rostral maxillary and ventral conchal sinus. The second or caudal system included the caudal maxillary, dorsal conchal, frontal, sphenopalatine, and middle conchal sinuses. These two systems overlapped and were interlocked due to the oblique orientation of the maxillary septum. Total volumes of the paranasal sinuses ranged from 911.50 to 1502.00 ml (mean ± SD, 1151.00 ± 186.30 ml). 3D renderings of equine paranasal sinuses by use of semi-automated segmentation of CT-datasets improved understanding of this anatomically challenging region. PMID:23890087

  6. Assessment of renal volume by three-dimensional ultrasonography in pregnant bitches: an experimental study using virtual organ computer-aided analysis

    PubMed Central

    2012-01-01

    Background To assess and to compare the renal volume evolution in bitches during pregnancy by two-dimensional (2D) ultrasonography using the ellipsoid technique (volume = length x width x depth x 0.523) and three-dimensional (3D) ultrasonography using the Virtual Organ Computer-aided AnaLysis (VOCAL) method. A longitudinal prospective study was performed with 17 normal Golden Retrievers bitches during pregnancy from heat to the last third of gestation. The ultrasound scans were performed by two veterinarians. The left and right kidneys were assessed in three moments (day 0 = non-pregnant bitches; days 1st to 20th of pregnancy and days 21st to 40th of pregnancy) by three techniques (ellipsoid; VOCAL 12° and VOCAL 30°). For reproducibility calculations, we used the intraclass correlation coefficient (ICC). Results The inferential result of the volumes in ANOVA revealed the interaction effect between side and moment (p = 0.009). The 3D techniques showed, in average, the same renal volumes (p = 0.137) regardless of the side and moment. Considering the right side, the renal volume in the day 0 was smaller than the day 21st to 40th (p = 0.029). Considering the left side, the renal volume at day 0 was smaller than the day 1st to 20th (p = 0.020) and day 21st to 40th (p = 0.007). It was found good intra observer reproducibility (ICC > 0.9) and none of the three techniques showed a good inter observer reproducibility (ICC < 0.7). Conclusion The renal volume bitches by 3D ultrasonography using the VOCAL method (12° and 30°) had good correlation with the volume obtained by 2D ultrasonography method. PMID:22748096

  7. Distribution of lithostratigraphic units within the central block of Yucca Mountain, Nevada: A three-dimensional computer-based model, Version YMP.R2.0

    SciTech Connect

    Buesch, D.C.; Nelson, J.E.; Dickerson, R.P.; Drake, R.M. II; San Juan, C.A.; Spengler, R.W.; Geslin, J.K.; Moyer, T.C.

    1996-09-01

    Yucca Mountain, Nevada is underlain by 14.0 to 11.6 Ma volcanic rocks tilted eastward 3{degree} to 20{degree} and cut by faults that were primarily active between 12.7 and 11.6 Ma. A three-dimensional computer-based model of the central block of the mountain consists of seven structural subblocks composed of six formations and the interstratified-bedded tuffaceous deposits. Rocks from the 12.7 Ma Tiva Canyon Tuff, which forms most of the exposed rocks on the mountain, to the 13.1 Ma Prow Pass Tuff are modeled with 13 surfaces. Modeled units represent single formations such as the Pah Canyon Tuff, grouped units such as the combination of the Yucca Mountain Tuff with the superjacent bedded tuff, and divisions of the Topopah Spring Tuff such as the crystal-poor vitrophyre interval. The model is based on data from 75 boreholes from which a structure contour map at the base of the Tiva Canyon Tuff and isochore maps for each unit are constructed to serve as primary input. Modeling consists of an iterative cycle that begins with the primary structure-contour map from which isochore values of the subjacent model unit are subtracted to produce the structure contour map on the base of the unit. This new structure contour map forms the input for another cycle of isochore subtraction to produce the next structure contour map. In this method of solids modeling, the model units are presented by surfaces (structure contour maps), and all surfaces are stored in the model. Surfaces can be converted to form volumes of model units with additional effort. This lithostratigraphic and structural model can be used for (1) storing data from, and planning future, site characterization activities, (2) preliminary geometry of units for design of Exploratory Studies Facility and potential repository, and (3) performance assessment evaluations.

  8. Development and Clinical Evaluation of a Three-Dimensional Cone-Beam Computed Tomography Estimation Method Using a Deformation Field Map

    SciTech Connect

    Ren, Lei; Chetty, Indrin J.; Zhang Junan; Jin Jianyue; Wu, Q. Jackie; Yan Hui; Brizel, David M.; Lee, W. Robert; Movsas, Benjamin; Yin Fangfang

    2012-04-01

    Purpose: To develop a three-dimensional (3D) cone-beam computed tomography (CBCT) estimation method using a deformation field map, and to evaluate and optimize the efficiency and accuracy of the method for use in the clinical setting. Methods and Materials: We propose a method to estimate patient CBCT images using prior information and a deformation model. Patients' previous CBCT data are used as the prior information, and the new CBCT volume to be estimated is considered as a deformation of the prior image volume. The deformation field map is solved by minimizing deformation energy and maintaining new projection data fidelity using a nonlinear conjugate gradient method. This method was implemented in 3D form using hardware acceleration and multi-resolution scheme, and it was evaluated for different scan angles, projection numbers, and scan directions using liver, lung, and prostate cancer patient data. The accuracy of the estimation was evaluated by comparing the organ volume difference and the similarity between estimated CBCT and the CBCT reconstructed from fully sampled projections. Results: Results showed that scan direction and number of projections do not have significant effects on the CBCT estimation accuracy. The total scan angle is the dominant factor affecting the accuracy of the CBCT estimation algorithm. Larger scan angles yield better estimation accuracy than smaller scan angles. Lung cancer patient data showed that the estimation error of the 3D lung tumor volume was reduced from 13.3% to 4.3% when the scan angle was increased from 60 Degree-Sign to 360 Degree-Sign using 57 projections. Conclusions: The proposed estimation method is applicable for 3D DTS, 3D CBCT, four-dimensional CBCT, and four-dimensional DTS image estimation. This method has the potential for significantly reducing the imaging dose and improving the image quality by removing the organ distortion artifacts and streak artifacts shown in images reconstructed by the conventional

  9. Mathematical modelling and computational study of two-dimensional and three-dimensional dynamics of receptor-ligand interactions in signalling response mechanisms.

    PubMed

    García-Peñarrubia, Pilar; Gálvez, Juan J; Gálvez, Jesús

    2014-09-01

    Cell signalling processes involve receptor trafficking through highly connected networks of interacting components. The binding of surface receptors to their specific ligands is a key factor for the control and triggering of signalling pathways. But the binding process still presents many enigmas and, by analogy with surface catalytic reactions, two different mechanisms can be conceived: the first mechanism is related to the Eley-Rideal (ER) mechanism, i.e. the bulk-dissolved ligand interacts directly by pure three-dimensional (3D) diffusion with the specific surface receptor; the second mechanism is similar to the Langmuir-Hinshelwood (LH) process, i.e. 3D diffusion of the ligand to the cell surface followed by reversible ligand adsorption and subsequent two-dimensional (2D) surface diffusion to the receptor. A situation where both mechanisms simultaneously contribute to the signalling process could also occur. The aim of this paper is to perform a computational study of the behavior of the signalling response when these different mechanisms for ligand-receptor interactions are integrated into a model for signal transduction and ligand transport. To this end, partial differential equations have been used to develop spatio-temporal models that show trafficking dynamics of ligands, cell surface components, and intracellular signalling molecules through the different domains of the system. The mathematical modeling developed for these mechanisms has been applied to the study of two situations frequently found in cell systems: (a) dependence of the signal response on cell density; and (b) enhancement of the signalling response in a synaptic environment.

  10. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 1: Theory and method

    NASA Technical Reports Server (NTRS)

    Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  11. Noninvasive Three-dimensional Cardiac Activation Imaging from Body Surface Potential Maps: A Computational and Experimental Study on a Rabbit Model

    PubMed Central

    Han, Chengzong; Liu, Zhongming; Zhang, Xin; Pogwizd, Steven; He, Bin

    2009-01-01

    Three-dimensional (3-D) cardiac activation imaging (3-DCAI) is a recently developed technique that aims at imaging the activation sequence throughout the 3-D volume of myocardium. 3-DCAI entails the modeling and estimation of the cardiac equivalent current density (ECD) distribution from which the local activation time within myocardium is determined as the time point with the peak amplitude of local ECD estimates. In this paper, we report, for the first time, an experimental study of the performance and applicability of 3-DCAI as judged by measured 3-D cardiac activation sequence using 3-D intra-cardiac mapping, in a group of 4 healthy rabbits during ventricular pacing. During the experiments, the body surface potentials and the intramural bipolar electrical recordings were simultaneously measured in a closed-chest condition to allow for a rigorous evaluation of the noninvasive 3-DCAI algorithm using the intra-cardiac mapping. The ventricular activation sequence non-invasively imaged from the body surface measurements by using 3-DCAI was generally in agreement with that obtained from the invasive intra-cardiac recordings. The overall difference between them, quantified as the root mean square (RMS) error, was 7.42±0.61 ms, and the normalized difference, quantified as the relative error (RE), was 0.24±0.03. The distance from the reconstructed site of initial activation to the actual pacing site, defined as the localization error (LE), was 5.47±1.57 mm. In addition, computer simulations were conducted to provide additional assessment of the performance of the 3-DCAI algorithm using a realistic-geometry rabbit heart-torso model. Averaged over 9 pacing sites, the RE and LE were 0.20±0.07 and 4.56±1.12 mm, respectively, for single-pacing, when 20 μV Gaussian white noise was added to the body surface potentials at 53 body surface locations. Averaged over 8 pairs of dual pacing, the RE was 0.25±0.06 for 20 μV additive noise. The present results obtained through

  12. Three-dimensional diffusion of non-sorbing species in porous sandstone: computer simulation based on X-ray microtomography using synchrotron radiation.

    PubMed

    Nakashima, Yoshito; Nakano, Tsukasa; Nakamura, Koichi; Uesugi, Kentaro; Tsuchiyama, Akira; Ikeda, Susumu

    2004-10-01

    The diffusion pathways of porous sandstone were examined by a three-dimensional (3-D) imaging technique based on X-ray computed tomography (CT) using the SPring-8 (Super Photon ring-8 GeV, Hyogo, Japan) synchrotron radiation facility. The analysis was undertaken to develop better understanding of the diffusion pathways in natural rock as a key factor in clarifying the detailed mechanism of the diffusion of radionuclides and water molecules through the pore spaces of natural barriers in underground nuclear waste disposal facilities. A cylindrical sample (diameter 4 mm, length 6 mm) of sandstone (porosity 0.14) was imaged to obtain a 3-D image set of 450(3) voxels=2.62(3) mm(3). Through cluster-labeling analysis of the 3-D image set, it was revealed that 89% of the pore space forms a single large pore-cluster responsible for macroscopic diffusive transport, while only 11% of the pore space is made up of isolated pores that are not involved in long-range diffusive transport. Computer simulations of the 3-D diffusion of non-sorbing random walkers in the largest pore cluster were performed to calculate the surface-to-volume ratio of the pore, tortuosity (diffusion coefficient in free space divided by that in porous rock). The results showed that (i) the simulated surface-to-volume ratio is about 60% of the results obtained by conventional pulsed-field-gradient proton nuclear magnetic resonance (NMR) laboratory experiments and (ii) the simulated tortuosity is five to seven times larger than the results of laboratory diffusion experiments using non-sorbing I(-) and Br(-). These discrepancies are probably attributed to the intrinsic sample heterogeneity and limited spatial resolution of the CT system. The permeability was also estimated based on the NMR diffusometry theory using the results of the random walk simulations via the Kozeny-Carman equation. The estimated permeability involved an error of about 20% compared with the permeability measured by the conventional

  13. Three-dimensional surface imaging in plastic surgery: foundation, practical applications, and beyond.

    PubMed

    Chang, Jessica B; Small, Kevin H; Choi, Mihye; Karp, Nolan S

    2015-05-01

    Three-dimensional surface imaging has gained clinical acceptance in plastic and reconstructive surgery. In contrast to computed tomography/magnetic resonance imaging, three-dimensional surface imaging relies on triangulation in stereophotography to measure surface x, y, and z coordinates. This study reviews the past, present, and future directions of three-dimensional topographic imaging in plastic surgery. Historically, three-dimensional imaging technology was first used in a clinical setting in 1944 to diagnose orthodontologic conditions. Karlan established its use in the field of plastic surgery in 1979, analyzing contours and documenting facial asymmetries. Present use of three-dimensional surface imaging has focused on standardizing patient topographic measurements to enhance preoperative planning and to improve postoperative outcomes. Various measurements (e.g., volume, surface area, vector distance, curvature) have been applied to breast, body, and facial topography to augment patient analysis. Despite the rapid progression of the clinical applications of three-dimensional imaging, current use of this technology is focused on the surgeon's perspective and secondarily the patient's perspective. Advancements in patient simulation may improve patient-physician communication, education, and satisfaction. However, a communal database of three-dimensional surface images integrated with emerging three-dimensional printing and portable information technology will validate measurements and strengthen preoperative planning and postoperative outcomes. Three-dimensional surface imaging is a useful adjunct to plastic and reconstructive surgery practices and standardizes measurements to create objectivity in a subjective field. Key improvements in three-dimensional imaging technology may significantly enhance the quality of plastic and reconstructive surgery in the near future. PMID:25835245

  14. Management of a Two-rooted Maxillary Central Incisor Using Cone-beam Computed Tomography: Importance of Three-dimensional Imaging

    PubMed Central

    Kumar Gupta, Saurabh; Saxena, Payal; Khetarpal, Shaleen; Solanki, Mishthu

    2015-01-01

    We report a rare case of a two-rooted maxillary central incisor, stressing the importance of three-dimensional imaging in treatment planning and conservative approach of management. Endodontic treatment of this central incisor was carried out with a successful outcome. PMID:26697155

  15. Three-dimensional laser microvision.

    PubMed

    Shimotahira, H; Iizuka, K; Chu, S C; Wah, C; Costen, F; Yoshikuni, Y

    2001-04-10

    A three-dimensional (3-D) optical imaging system offering high resolution in all three dimensions, requiring minimum manipulation and capable of real-time operation, is presented. The system derives its capabilities from use of the superstructure grating laser source in the implementation of a laser step frequency radar for depth information acquisition. A synthetic aperture radar technique was also used to further enhance its lateral resolution as well as extend the depth of focus. High-speed operation was made possible by a dual computer system consisting of a host and a remote microcomputer supported by a dual-channel Small Computer System Interface parallel data transfer system. The system is capable of operating near real time. The 3-D display of a tunneling diode, a microwave integrated circuit, and a see-through image taken by the system operating near real time are included. The depth resolution is 40 mum; lateral resolution with a synthetic aperture approach is a fraction of a micrometer and that without it is approximately 10 mum. PMID:18357177

  16. Three Dimensional Display Of Meteorological Scientific Data

    NASA Astrophysics Data System (ADS)

    Grotch, Stanley L.

    1988-01-01

    Even a cursory reading of any daily newspaper shows that we are in the midst of a dramatic revolution in computer graphics. Virtually every day some new piece of hardware or software is announced, adding to the tools available to the working scientist. Three dimensional graphics form a significant part of this revolution having become virtually commonplace in advertising and on television.

  17. Three-dimensional display technologies

    PubMed Central

    Geng, Jason

    2014-01-01

    The physical world around us is three-dimensional (3D), yet traditional display devices can show only two-dimensional (2D) flat images that lack depth (i.e., the third dimension) information. This fundamental restriction greatly limits our ability to perceive and to understand the complexity of real-world objects. Nearly 50% of the capability of the human brain is devoted to processing visual information [Human Anatomy & Physiology (Pearson, 2012)]. Flat images and 2D displays do not harness the brain’s power effectively. With rapid advances in the electronics, optics, laser, and photonics fields, true 3D display technologies are making their way into the marketplace. 3D movies, 3D TV, 3D mobile devices, and 3D games have increasingly demanded true 3D display with no eyeglasses (autostereoscopic). Therefore, it would be very beneficial to readers of this journal to have a systematic review of state-of-the-art 3D display technologies. PMID:25530827

  18. Three-Dimensional Schlieren Measurements

    NASA Astrophysics Data System (ADS)

    Sutherland, Bruce; Cochrane, Andrea

    2004-11-01

    Schlieren systems visualise disturbances that change the index of refraction of a fluid, for example due to temperature or salinity disturbances. `Synthetic schlieren' refers to a recent advance in which these disturbances are visualised with a digital camera and image-processing technology rather than the classical use of parabolic mirrors and a knife-edge. In a typical setup, light from an image of horizontal lines or dots passes almost horizontally through the test section of a fluid to a CCD camera. Refractive index disturbances distort the image and digital comparison of successive images reveals the plan-form structure and time evolution of the disturbances. If the disturbance is effectively two-dimensional, meaning that it is uniform across the line-of-sight of the camera, then its magnitude as well as its structure can measured through simple inversion of an algebraic equation. If the structure is axisymmetric with rotation-axis perpendicular to the line of sight, the magnitude of the disturbance can be measured through inversion of a non-singular square matrix. Here we report upon the extension of this work toward measuring the magnitude of a fully three-dimensional disturbance. This is done by analysing images from two perspectives through the test section and using inversion tomography techniques to reconstruct the disturbance field. The results are tested against theoretical predictions and experimental measurements.

  19. Accuracy of Ultrasound-Based (BAT) Prostate-Repositioning: A Three-Dimensional On-Line Fiducial-Based Assessment With Cone-Beam Computed Tomography

    SciTech Connect

    Boda-Heggemann, Judit Koehler, Frederick Marc; Kuepper, Beate; Wolff, Dirk; Wertz, Hansjoerg; Mai, Sabine; Hesser, Juergen; Lohr, Frank; Wenz, Frederik

    2008-03-15

    Purpose: To assess the accuracy of ultrasound-based repositioning (BAT) before prostate radiation with fiducial-based three-dimensional matching with cone-beam computed tomography (CBCT). Patients and Methods: Fifty-four positionings in 8 patients with {sup 125}I seeds/intraprostatic calcifications as fiducials were evaluated. Patients were initially positioned according to skin marks and after this according to bony structures based on CBCT. Prostate position correction was then performed with BAT. Residual error after repositioning based on skin marks, bony anatomy, and BAT was estimated by a second CBCT based on user-independent automatic fiducial registration. Results: Overall mean value (MV {+-} SD) residual error after BAT based on fiducial registration by CBCT was 0.7 {+-} 1.7 mm in x (group systematic error [M] = 0.5 mm; SD of systematic error [{sigma}] = 0.8 mm; SD of random error [{sigma}] = 1.4 mm), 0.9 {+-} 3.3 mm in y (M = 0.5 mm, {sigma} = 2.2 mm, {sigma} = 2.8 mm), and -1.7 {+-} 3.4 mm in z (M = -1.7 mm, {sigma} = 2.3 mm, {sigma} = 3.0 mm) directions, whereas residual error relative to positioning based on skin marks was 2.1 {+-} 4.6 mm in x (M = 2.6 mm, {sigma} = 3.3 mm, {sigma} = 3.9 mm), -4.8 {+-} 8.5 mm in y (M = -4.4 mm, {sigma} = 3.7 mm, {sigma} = 6.7 mm), and -5.2 {+-} 3.6 mm in z (M = -4.8 mm, {sigma} = 1.7 mm, {sigma} = 3.5mm) directions and relative to positioning based on bony anatomy was 0 {+-} 1.8 mm in x (M = 0.2 mm, {sigma} = 0.9 mm, {sigma} = 1.1 mm), -3.5 {+-} 6.8 mm in y (M = -3.0 mm, {sigma} = 1.8 mm, {sigma} = 3.7 mm), and -1.9 {+-} 5.2 mm in z (M = -2.0 mm, {sigma} = 1.3 mm, {sigma} = 4.0 mm) directions. Conclusions: BAT improved the daily repositioning accuracy over skin marks or even bony anatomy. The results obtained with BAT are within the precision of extracranial stereotactic procedures and represent values that can be achieved with several users with different education levels. If sonographic visibility is insufficient

  20. Three-Dimensional Quantification of Calcium Salt-Composite Resorption (CSC) In Vitro by Micro-computed Tomography (Micro-CT)

    NASA Astrophysics Data System (ADS)

    Winkler, T.; Dai, X. Y.; Mielke, G.; Vogt, S.; Buechner, H.; Schantz, J. T.; Harder, Y.; Machens, H. G.; Morlock, M. M.; Schilling, A. F.

    2014-04-01

    The commonly applied cell-based, two-dimensional (2D) in vitro resorption assays for biomaterials are limited in a variety of cases, including high initial roughness of material surface, uncontrollable solubilization (or resorption) of the entire material surface, or complex three-dimensional (3D) structure of the bioactive material itself. All these make the accurate assessment and successful selection of the optimal bone substitute material difficult. In vivo, micro-computed tomography (micro-CT) has been widely applied for the analysis of bone physiology and pathology, as well as for the 3D analysis of scaffolds for bone tissue engineering. In this study, we show that micro-CT can also be applied for the in vitro analysis of osteoclast-mediated resorption of biomaterials. For our experiments, we chose a calcium salt-composite (composite of calcium sulphate (CSC), calcium carbonate, glycerin-1,2,3-tripalmiate), which evades common 2D in vitro resorption analysis as a result of its high surface roughness and material composition. Human osteoclasts were differentiated from precursor cells on the surface of the material for 28 days. Cells were analyzed for expression of tartrate-resistant acid phosphatase 5b (TRAP5b), multinuclearity, and size. Volumetric analysis of resorption was performed by micro-CT. Multinucleated osteoclasts developed on the surface of the material. TRAP5b expression of the cells on CSC was comparable with TRAP5b expression of cells cultivated on dentin for the first 3 weeks of culture. At day 28, TRAP5b expression, cell number, and size of the TRAP+ cells were reduced on the CSC when compared with cells on dentin. Volumetric anaylsis by micro-CT showed a strong cellular effect on resorption of CSC. We consider micro-CT to be a promising technique for 3D quantification of cell-based resorption that will allow the study of cellular resorption of materials in vitro, which were up to now confined to animal experimental analysis.

  1. Expansion of Gutta-percha in contact with various concentrations of zinc oxide-eugenol sealer: A three-dimensional volumetric study using spiral computed tomography

    PubMed Central

    Tilakchand, Mahima; Jain, Abhishek; Naik, Balaram

    2016-01-01

    Aim: The purpose of this study was to evaluate the three-dimensional expansion of Gutta-percha (GP), at various powder/liquid ratios, of a zinc oxide-eugenol (ZOE)-based sealer using spiral computed tomography (SCT). Materials and Methods: Thirty-five freshly extracted human mandibular premolars were selected for this study. Cleaning and shaping were performed in all the teeth initially with hand K-files up to #25 and finally with RaCe rotary instruments (25/06). Teeth were randomly divided into five groups of 7 teeth each. Specimens were scanned using SCT. They were then viewed both cross-sectionally and longitudinally, with a constant thickness of 1 mm/slice. The volume of root canal in each tooth was estimated. Obturation was performed by GP points (25/04) and ZOE-based root canal sealer in all groups with different powder-liquid ratio. Groups 1, 2, 3, and 4, had powder/liquid ratio of 1:1, 1:2, 1:3, and 1:4, respectively, while in the control group, no sealer was used. The obturation was performed by sealer coated single cone GP. A second SCT scan was performed to determine the volume of GP and sealer in all four groups 1 day after obturation. The third and fourth SCT scans were taken 7 and 30 days after obturation, respectively. The mean volume of GP per group was calculated. Data were statistically analyzed using one-way ANOVA. Inter-group comparisons were done using Scheffe post hoc multiple comparisons test. Results: All groups with sealer showed expansion of GP at both 7th day and 30th day, which was statistically significant from the GP volume at 1st day. Groups 2 and 3 with powder/liquid ratio of 1:2 and 1:3 gave the highest mean volume values during 30 days period and showed significant expansion in comparison with Groups 1 and 4 with powder/liquid ratio of 1:1 and 1:4, respectively. Conclusion: Increasing the ratio of eugenol in sealer resulted in the volumetric expansion of GP. However, further studies should be performed to confirm the expansion of

  2. An Innovative Three-Dimensional Heterogeneous Coarse-Mesh Transport Method for Advanced and Generation IV Reactor Core Analysis and Design

    SciTech Connect

    Farzad Rahnema

    2009-11-12

    This project has resulted in a highly efficient method that has been shown to provide accurate solutions to a variety of 2D and 3D reactor problems. The goal of this project was to develop (1) an accurate and efficient three-dimensional whole-core neutronics method with the following features: based sollely on transport theory, does not require the use of cross-section homogenization, contains a highly accurate and self-consistent global flux reconstruction procedure, and is applicable to large, heterogeneous reactor models, and to (2) create new numerical benchmark problems for code cross-comparison.

  3. Dynamic Three-Dimensional Echocardiography

    NASA Astrophysics Data System (ADS)

    Matsusaka, Katsuhiko; Doi, Motonori; Oshiro, Osamu; Chihara, Kunihiro

    2000-08-01

    Conventional three-dimensional (3D) ultrasound imaging equipment for diagnosis requires much time to reconstruct 3D images or fix the view point for observing the 3D image. Thus, it is inconvenient for cardiac diagnosis. In this paper, we propose a new dynamic 3D echocardiography system. The system produces 3D images in real-time and permits changes in view point. This system consists of ultrasound diagnostic equipment, a digitizer and a computer. B-mode images are projected to a virtual 3D space by referring to the position of the probe of the ultrasound diagnosis equipment. The position is obtained by the digitizer to which the ultrasound probe is attached. The 3D cardiac image is constructed from B-mode images obtained simultaneously in the cardiac cycle. To obtain the same moment of heartbeat in the cardiac cycle, this system uses the electrocardiography derived from the diagnosis equipment. The 3D images, which show various scenes of the stage of heartbeat action, are displayed sequentially. The doctor can observe 3D images cut in any plane by pushing a button of the digitizer and zooming with the keyboard. We evaluated our prototype system by observation of a mitral valve in motion.

  4. Unenhanced CT in the evaluation of urinary calculi: application of advanced computer methods.

    PubMed

    Olcott, E W; Sommer, F G

    1999-04-01

    Recent advances in computer hardware and software technology enable radiologists to examine tissues and structures using three-dimensional figures constructed from the multiple planar images acquired during a spiral CT examination. Three-dimensional CT techniques permit the linear dimensions of renal calculi to be determined along all three coordinate axes with a high degree of accuracy and enable direct volumetric analysis of calculi, yielding information that is not available from any other diagnostic modality. Additionally, three-dimensional techniques can help to identify and localize calculi in patients with suspected urinary colic.

  5. Three-dimensional null point reconnection regimes

    SciTech Connect

    Priest, E. R.; Pontin, D. I.

    2009-12-15

    Recent advances in theory and computational experiments have shown the need to refine the previous categorization of magnetic reconnection at three-dimensional null points--points at which the magnetic field vanishes. We propose here a division into three different types, depending on the nature of the flow near the spine and fan of the null. The spine is an isolated field line which approaches the null (or recedes from it), while the fan is a surface of field lines which recede from it (or approach it). So-called torsional spine reconnection occurs when field lines in the vicinity of the fan rotate, with current becoming concentrated along the spine so that nearby field lines undergo rotational slippage. In torsional fan reconnection field lines near the spine rotate and create a current that is concentrated in the fan with a rotational flux mismatch and rotational slippage. In both of these regimes, the spine and fan are perpendicular and there is no flux transfer across spine or fan. The third regime, called spine-fan reconnection, is the most common in practice and combines elements of the previous spine and fan models. In this case, in response to a generic shearing motion, the null point collapses to form a current sheet that is focused at the null itself, in a sheet that locally spans both the spine and fan. In this regime the spine and fan are no longer perpendicular and there is flux transfer across both of them.

  6. Three-dimensionally ordered macroporous Li2FeSiO4/C composite as a high performance cathode for advanced lithium ion batteries

    NASA Astrophysics Data System (ADS)

    Ding, Zhengping; Liu, Jiatu; Ji, Ran; Zeng, Xiaohui; Yang, Shuanglei; Pan, Anqiang; Ivey, Douglas G.; Wei, Weifeng

    2016-10-01

    Li2MSiO4 (M = Mn, Fe, Co, Ni, et al.) has received great attention because of the theoretical possibility to reversibly deintercalate two Li+ ions from the structure. However, the silicates still suffer from low electronic conductivity, sluggish lithium ion diffusion and structural instability upon deep cycling. In order to solve these problems, a "hard-soft" templating method has been developed to synthesize three-dimensionally ordered macroporous (3DOM) Li2FeSiO4/C composites. The 3DOM Li2FeSiO4/C composites show a high reversible capacity (239 mAh g-1) with ∼1.50 lithium ion insertion/extraction, a capacity retention of nearly 100% after 420 cycles and excellent rate capability. The enhanced electrochemical performance is ascribed to the interconnected carbon framework that improves the electronic conductivity and the 3DOM structure that offers short Li ion diffusion pathways and restrains volumetric changes.

  7. Three-Dimensional Printing Surgical Applications

    PubMed Central

    Griffin, Michelle F.; Butler, Peter E.

    2015-01-01

    Introduction: Three-dimensional printing, a technology used for decades in the industrial field, gains a lot of attention in the medical field for its potential benefits. With advancement of desktop printers, this technology is accessible and a lot of research is going on in the medical field. Objective: To evaluate its application in surgical field, which may include but not limited to surgical planning, surgical education, implants, and prosthesis, which are the focus of this review. Methods: Research was conducted by searching PubMed, Web of science, and other reliable sources. We included original articles and excluded articles based on animals, those more than 10 years old, and those not in English. These articles were evaluated, and relevant studies were included in this review. Discussion: Three-dimensional printing shows a potential benefit in surgical application. Printed implants were used in patient in a few cases and show successful results; however, longer follow-up and more trials are needed. Surgical and medical education is believed to be more efficient with this technology than the current practice. Printed surgical instrument and surgical planning are also believed to improve with three-dimensional printing. Conclusion: Three-dimensional printing can be a very powerful tool in the near future, which can aid the medical field that is facing a lot of challenges and obstacles. However, despite the reported results, further research on larger samples and analytical measurements should be conducted to ensure this technology's impact on the practice. PMID:26301002

  8. Algorithm for planning a double-jaw orthognathic surgery using a computer-aided surgical simulation (CASS) protocol. Part 2: three-dimensional cephalometry.

    PubMed

    Xia, J J; Gateno, J; Teichgraeber, J F; Yuan, P; Li, J; Chen, K-C; Jajoo, A; Nicol, M; Alfi, D M

    2015-12-01

    Three-dimensional (3D) cephalometry is not as simple as just adding a 'third' dimension to a traditional two-dimensional cephalometric analysis. There are more complex issues in 3D analysis. These include how reference frames are created, how size, position, orientation and shape are measured, and how symmetry is assessed. The main purpose of this article is to present the geometric principles of 3D cephalometry. In addition, the Gateno-Xia cephalometric analysis is presented; this is the first 3D cephalometric analysis to observe these principles.

  9. Description and assessment of RAMONA-3B Mod. 0 Cycle 4: a computer code with three-dimensional neutron kinetics for BWR system transients

    SciTech Connect

    Wulff, W; Cheng, H S; Diamond, D J; Khatib-Rahbar, M

    1984-01-01

    This report documents the physical models and the numerical methods employed in the BWR systems code RAMONA-3B. The RAMONA-3B code simulates three-dimensional neutron kinetics and multichannel core hydraulics of nonhomogeneous, nonequilibrium two-phase flows. RAMONA-3B is programmed to calculate the steady and transient conditions in the main steam supply system for normal and abnormal operational transients, including the performances of plant control and protection systems. Presented are code capabilities and limitations, models and solution techniques, the results of development code assessment and suggestions for improving the code in the future.

  10. Three-dimensional printing of the retina

    PubMed Central

    Lorber, Barbara; Hsiao, Wen-Kai; Martin, Keith R.

    2016-01-01

    Purpose of review Biological three-dimensional printing has received a lot of media attention over recent years with advances made in printing cellular structures, including skin and heart tissue for transplantation. Although limitations exist in creating functioning organs with this method, the hope has been raised that creating a functional retina to cure blindness is within reach. The present review provides an update on the advances made toward this goal. Recent findings It has recently been shown that two types of retinal cells, retinal ganglion cells and glial cells, can be successfully printed using a piezoelectric inkjet printer. Importantly, the cells remained viable and did not change certain phenotypic features as a result of the printing process. In addition, recent advances in the creation of complex and viable three-dimensional cellular structures have been made. Summary Some first promising steps toward the creation of a functional retina have been taken. It now needs to be investigated whether recent findings can be extended to other cells of the retina, including those derived from human tissue, and if a complex and viable retinal structure can be created through three-dimensional printing. PMID:27045545

  11. Three-dimensional silicon micromachining

    NASA Astrophysics Data System (ADS)

    Azimi, S.; Song, J.; Dang, Z. Y.; Liang, H. D.; Breese, M. B. H.

    2012-11-01

    A process for fabricating arbitrary-shaped, two- and three-dimensional silicon and porous silicon components has been developed, based on high-energy ion irradiation, such as 250 keV to 1 MeV protons and helium. Irradiation alters the hole current flow during subsequent electrochemical anodization, allowing the anodization rate to be slowed or stopped for low/high fluences. For moderate fluences the anodization rate is selectively stopped only at depths corresponding to the high defect density at the end of ion range, allowing true three-dimensional silicon machining. The use of this process in fields including optics, photonics, holography and nanoscale depth machining is reviewed.

  12. Three-Dimensional Printing in Orthopedic Surgery.

    PubMed

    Eltorai, Adam E M; Nguyen, Eric; Daniels, Alan H

    2015-11-01

    Three-dimensional (3D) printing is emerging as a clinically promising technology for rapid prototyping of surgically implantable products. With this commercially available technology, computed tomography or magnetic resonance images can be used to create graspable objects from 3D reconstructed images. Models can enhance patients' understanding of their pathology and surgeon preoperative planning. Customized implants and casts can be made to match an individual's anatomy. This review outlines 3D printing, its current applications in orthopedics, and promising future directions.

  13. Method and apparatus for three dimensional braiding

    NASA Technical Reports Server (NTRS)

    Farley, Gary L. (Inventor)

    1997-01-01

    A machine for three-dimensional braiding of fibers is provided in which carrier members travel on a curved, segmented and movable braiding surface. The carrier members are capable of independent, self-propelled motion along the braiding surface. Carrier member position on the braiding surface is controlled and monitored by computer. Also disclosed is a yarn take-up device capable of maintaining tension in the braiding fiber.

  14. Method and apparatus for three dimensional braiding

    NASA Technical Reports Server (NTRS)

    Farley, Gary L. (Inventor)

    1995-01-01

    A machine for three-dimensional braiding of fibers is provided in which carrier members travel on a curved, segmented and movable braiding surface. The carrier members are capable of independent, self-propelled motion along the braiding surface. Carrier member position on the braiding surface is controlled and monitored by computer. Also disclosed is a yarn take-up device capable of maintaining tension in the braiding fiber.

  15. Three-dimensional photogrammetry for laboratory applications

    NASA Astrophysics Data System (ADS)

    Alem, Nabih M.

    1994-12-01

    The direct linear transformation (DLT) is a method that simplifies measurements of the three-dimensional coordinates of a point target in the laboratory using photographic two-dimensional imagery. This report describes a procedure to implement the DLT equations and gives the Fortran code of computer programs for the DLT calibration of multicamera system and 3-D reconstruction of a single point from several images.

  16. JAC3D -- A three-dimensional finite element computer program for the nonlinear quasi-static response of solids with the conjugate gradient method; Yucca Mountain Site Characterization Project

    SciTech Connect

    Biffle, J.H.

    1993-02-01

    JAC3D is a three-dimensional finite element program designed to solve quasi-static nonlinear mechanics problems. A set of continuum equations describes the nonlinear mechanics involving large rotation and strain. A nonlinear conjugate gradient method is used to solve the equation. The method is implemented in a three-dimensional setting with various methods for accelerating convergence. Sliding interface logic is also implemented. An eight-node Lagrangian uniform strain element is used with hourglass stiffness to control the zero-energy modes. This report documents the elastic and isothermal elastic-plastic material model. Other material models, documented elsewhere, are also available. The program is vectorized for efficient performance on Cray computers. Sample problems described are the bending of a thin beam, the rotation of a unit cube, and the pressurization and thermal loading of a hollow sphere.

  17. Transition of a Three-Dimensional Unsteady Viscous Flow Analysis from a Research Environment to the Design Environment

    NASA Technical Reports Server (NTRS)

    Dorney, Suzanne; Dorney, Daniel J.; Huber, Frank; Sheffler, David A.; Turner, James E. (Technical Monitor)

    2001-01-01

    The advent of advanced computer architectures and parallel computing have led to a revolutionary change in the design process for turbomachinery components. Two- and three-dimensional steady-state computational flow procedures are now routinely used in the early stages of design. Unsteady flow analyses, however, are just beginning to be incorporated into design systems. This paper outlines the transition of a three-dimensional unsteady viscous flow analysis from the research environment into the design environment. The test case used to demonstrate the analysis is the full turbine system (high-pressure turbine, inter-turbine duct and low-pressure turbine) from an advanced turboprop engine.

  18. Growth of three dimensional flower-like molybdenum disulfide hierarchical structures on graphene/carbon nanotube network: An advanced heterostructure for energy storage devices

    NASA Astrophysics Data System (ADS)

    Lingappan, Niranjanmurthi; Van, Ngoc Huynh; Lee, Suok; Kang, Dae Joon

    2015-04-01

    We report the design and synthesis of three dimensional flower-like molybdenum disulphide (f-MoS2) hierarchical structures, on reduced graphene oxide (RGO)/oxidized multi-walled carbon nanotube (o-MWCNT) backbone (f-MoS2/RGO/o-MWCNT), through one-pot hydrothermal method. Control experiments reveal that the homogenously distributed o-MWCNTs on RGO play an essential role for the formation of such morphology. As an anode for lithium ion batteries, the f-MoS2/RGO/o-MWCNT hybrid delivers a high reversible capacity of 1275 mAh g-1 at the current density of 100 mA g-1, superior rate capability and excellent long cycle life, with capacity retention of 93% after 100 cycles. The outstanding electrochemical performance can be attributed to the large surface area, short diffusion length and continuous electron transport pathway, as a consequence of the intimate contact between f-MoS2, graphene, and o-MWCNTs.

  19. Three dimensional colorimetric assay assemblies

    SciTech Connect

    Charych, D.; Reichart, A.

    2000-06-27

    A direct assay is described using novel three-dimensional polymeric assemblies which change from a blue to red color when exposed to an analyte, in one case a flu virus. The assemblies are typically in the form of liposomes which can be maintained in a suspension, and show great intensity in their color changes. Their method of production is also described.

  20. The Three-Dimensional Universe.

    ERIC Educational Resources Information Center

    Banks, Dale A.; Powell, Harry D.

    1992-01-01

    Provides instructions for helping students construct a three-dimensional model of a constellation. Aluminum foil spheres with various diameters are used to represent stars with various apparent magnitudes. The positions of the stars in the model are determined from constellation maps and by converting actual star distances into millimeters. (PR)

  1. Three-Dimensional Lissajous Figures.

    ERIC Educational Resources Information Center

    D'Mura, John M.

    1989-01-01

    Described is a mechanically driven device for generating three-dimensional harmonic space figures with different frequencies and phase angles on the X, Y, and Z axes. Discussed are apparatus, viewing stereo pairs, equations of motion, and using space figures in classroom. (YP)

  2. Three dimensional colorimetric assay assemblies

    DOEpatents

    Charych, Deborah; Reichart, Anke

    2000-01-01

    A direct assay is described using novel three-dimensional polymeric assemblies which change from a blue to red color when exposed to an analyte, in one case a flu virus. The assemblies are typically in the form of liposomes which can be maintained in a suspension, and show great intensity in their color changes. Their method of production is also described.

  3. Transient, three-dimensional potential flow problems and dynamic response of the surrounding structures. I - Description of the fluid dynamics by a singularity method /Computer code SING/

    NASA Astrophysics Data System (ADS)

    Krieg, R.; Hailfinger, G.

    1980-02-01

    In Part I a singularity method - also called boundary integral equation method or panel method - has been developed that is applicable especially to highly transient internal flow problems with any three-dimensional geometry including walls wetted on both sides. The boundary conditions are prescribed in terms of pressures and/or accelerations. The method is primarily based on a recently developed dipole element treatment for incompressible fluids. Such elements (panels) can be fitted to the fluid boundary or any enveloping surface. Also, point sources may be included. The applicability of the method is demonstrated by two different examples: the incipient flow in a T-joint and the oscillating flow in the pressure suppression system of a boiling water reactor.

  4. Fast interactive real-time volume rendering of real-time three-dimensional echocardiography: an implementation for low-end computers

    NASA Technical Reports Server (NTRS)

    Saracino, G.; Greenberg, N. L.; Shiota, T.; Corsi, C.; Lamberti, C.; Thomas, J. D.

    2002-01-01

    Real-time three-dimensional echocardiography (RT3DE) is an innovative cardiac imaging modality. However, partly due to lack of user-friendly software, RT3DE has not been widely accepted as a clinical tool. The object of this study was to develop and implement a fast and interactive volume renderer of RT3DE datasets designed for a clinical environment where speed and simplicity are not secondary to accuracy. Thirty-six patients (20 regurgitation, 8 normal, 8 cardiomyopathy) were imaged using RT3DE. Using our newly developed software, all 3D data sets were rendered in real-time throughout the cardiac cycle and assessment of cardiac function and pathology was performed for each case. The real-time interactive volume visualization system is user friendly and instantly provides consistent and reliable 3D images without expensive workstations or dedicated hardware. We believe that this novel tool can be used clinically for dynamic visualization of cardiac anatomy.

  5. Advanced Computing for Medicine.

    ERIC Educational Resources Information Center

    Rennels, Glenn D.; Shortliffe, Edward H.

    1987-01-01

    Discusses contributions that computers and computer networks are making to the field of medicine. Emphasizes the computer's speed in storing and retrieving data. Suggests that doctors may soon be able to use computers to advise on diagnosis and treatment. (TW)

  6. Three-Dimensional Displays In The Future Flight Station

    NASA Astrophysics Data System (ADS)

    Bridges, Alan L.

    1984-10-01

    This review paper summarizes the development and applications of computer techniques for the representation of three-dimensional data in the future flight station. It covers the development of the Lockheed-NASA Advanced Concepts Flight Station (ACFS) research simulators. These simulators contain: A Pilot's Desk Flight Station (PDFS) with five 13- inch diagonal, color, cathode ray tubes on the main instrument panel; a computer-generated day and night visual system; a six-degree-of-freedom motion base; and a computer complex. This paper reviews current research, development, and evaluation of easily modifiable display systems and software requirements for three-dimensional displays that may be developed for the PDFS. This includes the analysis and development of a 3-D representation of the entire flight profile. This 3-D flight path, or "Highway-in-the-Sky", will utilize motion and perspective cues to tightly couple the human responses of the pilot to the aircraft control systems. The use of custom logic, e.g., graphics engines, may provide the processing power and architecture required for 3-D computer-generated imagery (CGI) or visual scene simulation (VSS). Diffraction or holographic head-up displays (HUDs) will also be integrated into the ACFS simulator to permit research on the requirements and use of these "out-the-window" projection systems. Future research may include the retrieval of high-resolution, perspective view terrain maps which could then be overlaid with current weather information or other selectable cultural features.

  7. Documentation of computer programs to compute and display pathlines using results from the U.S. Geological Survey modular three-dimensional finite-difference ground-water flow model

    USGS Publications Warehouse

    Pollock, David W.

    1989-01-01

    A particle tracking post-processing package was developed to compute three-dimensional path lines based on output from steady-state simulations obtained with the U.S. Geological Survey modular 3-dimensional finite difference groundwater flow model. The package consists of two FORTRAN 77 computer programs: (1) MODPATH, which calculates pathlines, and (2) MODPATH-PLOT, which presents results graphically. MODPATH uses a semi-analytical particle tracking scheme. The method is based on the assumption that each directional velocity component varies linearly within a grid cell in its own coordinate direction. This assumption allows an analytical expression to be obtained describing the flow path within a grid cell. Given the initial position of a particle anywhere in a cell, the coordinates of any other point along its path line within the cell, and the time of travel between them, can be computed directly. Data is input to MODPATH and MODPATH-PLOT through a combination of files and interactive dialogue. Examples of how to use MODPATH and MODPATH-PLOT are provided for a sample problem. Listings of the computer codes and detailed descriptions of input data format and program options are also presented. (Author 's abstract)

  8. Confocal fluorescence microscopy and three-dimensional reconstruction.

    PubMed

    Wright, S J; Schatten, G

    1991-05-01

    Several recent technological advances have considerably improved the field of confocal fluorescence microscopy. Improvements in confocal microscope design, new fluorescent probes and indicators, more sensitive imaging devices, and computer advances which allow for data manipulation and storage provide a convenient method to acquire complex three-dimensional (3-D) architectural details which previously were difficult or impossible to obtain from biological specimens. Applications of the laser scanning and tandem scanning confocal microscopes offer the potential for gaining powerful insights into the complex relationship of cellular structure and function. Confocal microscopy generates optical sections free from out-of-focus blur. With the development of new visualization tools to render and display complex 3-D data, a set of optical sections taken at different focal planes can be three-dimensionally reconstructed to create an animated sequence which can reveal latent features of the specimen. The combination of confocal microscopy and 3-D reconstruction provides a powerful new imaging tool to advance knowledge about structural and functional cellular properties as they occur dynamically in three dimensions.

  9. Three-dimensional surgical simulation.

    PubMed

    Cevidanes, Lucia H C; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2010-09-01

    In this article, we discuss the development of methods for computer-aided jaw surgery, which allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3-dimensional surface models from cone-beam computed tomography, dynamic cephalometry, semiautomatic mirroring, interactive cutting of bone, and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intraoperative guidance. The system provides further intraoperative assistance with a computer display showing jaw positions and 3-dimensional positioning guides updated in real time during the surgical procedure. The computer-aided surgery system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training, and assessing the difficulties of the surgical procedures before the surgery. Computer-aided surgery can make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases.

  10. Three-dimensional imaging modalities in endodontics

    PubMed Central

    Mao, Teresa

    2014-01-01

    Recent research in endodontics has highlighted the need for three-dimensional imaging in the clinical arena as well as in research. Three-dimensional imaging using computed tomography (CT) has been used in endodontics over the past decade. Three types of CT scans have been studied in endodontics, namely cone-beam CT, spiral CT, and peripheral quantitative CT. Contemporary endodontics places an emphasis on the use of cone-beam CT for an accurate diagnosis of parameters that cannot be visualized on a two-dimensional image. This review discusses the role of CT in endodontics, pertaining to its importance in the diagnosis of root canal anatomy, detection of peri-radicular lesions, diagnosis of trauma and resorption, presurgical assessment, and evaluation of the treatment outcome. PMID:25279337

  11. Three-dimensional Allan fault plane analysis

    SciTech Connect

    Hoffman, K.S.; Taylor, D.R.; Schnell, R.T.

    1994-12-31

    Allan fault-plane analysis is a useful tool for determining hydrocarbon migration paths and the location of possible traps. While initially developed for Gulf coast deltaic and interdeltaic environments, fault-plane analysis has been successfully applied in many other geologic settings. Where the geology involves several intersecting faults and greater complexity, many two-dimensional displays are required in the investigation and it becomes increasingly difficult to accurately visualize both fault relationships and migration routes. Three-dimensional geospatial fault and structure modeling using computer techniques, however, facilitates both visualization and understanding and extends fault-plane analysis into much more complex situations. When a model is viewed in three dimensions, the strata on both sides of a fault can be seen simultaneously while the true structural character of one or more fault surfaces is preserved. Three-dimensional analysis improves the speed and accuracy of the fault plane methodology.

  12. Simulation of complex three-dimensional flows

    NASA Technical Reports Server (NTRS)

    Diewert, G. S.; Rothmund, H. J.; Nakahashi, K.

    1985-01-01

    The concept of splitting is used extensively to simulate complex three dimensional flows on modern computer architectures. Used in all aspects, from initial grid generation to the determination of the final converged solution, splitting is used to enhance code vectorization, to permit solution driven grid adaption and grid enrichment, to permit the use of concurrent processing, and to enhance data flow through hierarchal memory systems. Three examples are used to illustrate these concepts to complex three dimensional flow fields: (1) interactive flow over a bump; (2) supersonic flow past a blunt based conical afterbody at incidence to a free stream and containing a centered propulsive jet; and (3) supersonic flow past a sharp leading edge delta wing at incidence to the free stream.

  13. Three-dimensional convection in horizontal cylinders - Numerical solutions and comparison with experimental and analytical results

    NASA Technical Reports Server (NTRS)

    Smutek, C.; Bontoux, P.; Roux, B.; Schiroky, G. H.; Hurford, A. C.

    1985-01-01

    The results of a three-dimensional numerical simulation of Boussinesq free convection in a horizontal differentially heated cylinder are presented. The computation was based on a Samarskii-Andreyev scheme (described by Leong, 1981) and a false-transient advancement in time, with vorticity, velocity, and temperature as dependent variables. Solutions for velocity and temperature distributions were obtained for Rayleigh numbers (based on the radius) Ra = 74-18,700, thus covering the core- and boundary-layer-driven regimes. Numerical solutions are compared with asymptotic analytical solutions and experimental data. The numerical results well represent the complex three-dimensional flows found experimentally.

  14. A Method for Computing the Core Flow in Three-Dimensional Leading-Edge Vortices. Ph.D. Thesis - North Carolina State Univ.

    NASA Technical Reports Server (NTRS)

    Luckring, J. M.

    1985-01-01

    A theory is presented for calculating the flow in the core of a separation-induced leading-edge vortex. The method is based on matching inner and outer representations of the vortex. The inner model of the vortex is based on the quasicylindrical Navier-Stokes equations; the flow is assumed to be steady, axially symmetric, and incompressible and in addition, gradients in the radial direction are assumed to be much larger then gradients in the axial direction. The outer model is based on the three-dimensional free-vortex-sheet theory, a higher-order panel method which solves the Prandtl-Glauert equation including nonlinear boundary conditions pertinent to the concentrated vorticity representation of the leading edge vortex. The resultant flow is evaluated a posteriori for evidence of incipient vortex breakdown and the critical helix angle concept, in conjunction with an adverse longitudinal pressure gradient, is found to correlate well with the occurrence of vortex breakdown at the trailing edge of delta, arrow, and diamond wings.

  15. Three-Dimensional Audio Client Library

    NASA Technical Reports Server (NTRS)

    Rizzi, Stephen A.

    2005-01-01

    The Three-Dimensional Audio Client Library (3DAudio library) is a group of software routines written to facilitate development of both stand-alone (audio only) and immersive virtual-reality application programs that utilize three-dimensional audio displays. The library is intended to enable the development of three-dimensional audio client application programs by use of a code base common to multiple audio server computers. The 3DAudio library calls vendor-specific audio client libraries and currently supports the AuSIM Gold-Server and Lake Huron audio servers. 3DAudio library routines contain common functions for (1) initiation and termination of a client/audio server session, (2) configuration-file input, (3) positioning functions, (4) coordinate transformations, (5) audio transport functions, (6) rendering functions, (7) debugging functions, and (8) event-list-sequencing functions. The 3DAudio software is written in the C++ programming language and currently operates under the Linux, IRIX, and Windows operating systems.

  16. Reconfigurable, braced, three-dimensional DNA nanostructures

    NASA Astrophysics Data System (ADS)

    Goodman, Russell P.; Heilemann, Mike; Doose, Sören; Erben, Christoph M.; Kapanidis, Achillefs N.; Turberfield, Andrew J.

    2008-02-01

    DNA nanotechnology makes use of the exquisite self-recognition of DNA in order to build on a molecular scale. Although static structures may find applications in structural biology and computer science, many applications in nanomedicine and nanorobotics require the additional capacity for controlled three-dimensional movement. DNA architectures can span three dimensions and DNA devices are capable of movement, but active control of well-defined three-dimensional structures has not been achieved. We demonstrate the operation of reconfigurable DNA tetrahedra whose shapes change precisely and reversibly in response to specific molecular signals. Shape changes are confirmed by gel electrophoresis and by bulk and single-molecule Förster resonance energy transfer measurements. DNA tetrahedra are natural building blocks for three-dimensional construction; they may be synthesized rapidly with high yield of a single stereoisomer, and their triangulated architecture conveys structural stability. The introduction of shape-changing structural modules opens new avenues for the manipulation of matter on the nanometre scale.

  17. Three-dimensional turbopump flowfield analysis

    NASA Technical Reports Server (NTRS)

    Sharma, O. P.; Belford, K. A.; Ni, R. H.

    1992-01-01

    A program was conducted to develop a flow prediction method applicable to rocket turbopumps. The complex nature of a flowfield in turbopumps is described and examples of flowfields are discussed to illustrate that physics based models and analytical calculation procedures based on computational fluid dynamics (CFD) are needed to develop reliable design procedures for turbopumps. A CFD code developed at NASA ARC was used as the base code. The turbulence model and boundary conditions in the base code were modified, respectively, to: (1) compute transitional flows and account for extra rates of strain, e.g., rotation; and (2) compute surface heat transfer coefficients and allow computation through multistage turbomachines. Benchmark quality data from two and three-dimensional cascades were used to verify the code. The predictive capabilities of the present CFD code were demonstrated by computing the flow through a radial impeller and a multistage axial flow turbine. Results of the program indicate that the present code operated in a two-dimensional mode is a cost effective alternative to full three-dimensional calculations, and that it permits realistic predictions of unsteady loadings and losses for multistage machines.

  18. Age-related changes of the larynx and trachea assessed by three-dimensional computed tomography in children: Application to endotracheal intubation and bronchoscopy.

    PubMed

    Seo, Jae-Hyun; Hwang, Se-Hwan; Kang, Jun-Myung; Kim, Chung-Soo; Joo, Young-Hoon

    2014-04-01

    The purpose of this study was to establish normative data of laryngotracheal dimensions and shape and to evaluate differences associated with age and sex using three-dimensional (3D) imaging. A total of 120 patients (64 boys and 56 girls) were included. Subjects were divided into four groups: Group 1 (0-2 years), Group 2 (3-7 years), Group 3 (8-13 years), and Group 4 (14-20 years). Using 3D image processing software, the laryngeal volume (LV), tracheal volume (TV), anteroposterior diameter at the glottis, cross-sectional area (CSA) at the subglottis, and laryngeal angle (LA) of the thyroid laminae were measured. Parameters of laryngotracheal volume and size were positively correlated with age, whereas the LA was inversely correlated with age. The LV, TV, CSA-3 mm, and CSA-5 mm exhibited a growth spurt in Groups 2 and 3. The LA decreased at a faster rate in Group 1 (P = 0.012). In Groups 1 and 2, there were no differences between genders for each laryngotracheal segmentation or plane. However, gender differences in the TV of Group 3 were statistically significant (P = 0.030). In Group 4, gender differences of all airway parameters were evident. Volume and other dimensions of the laryngotracheal airway increase with age. There was a significant increase in the LV, TV, CSA-3 mm, and CSA-5 mm in Groups 2 and 3. The LA correlated negatively with age in the Group 1. Significant sex dimorphisms are evident in Group 4.

  19. Advanced Computing for Science.

    ERIC Educational Resources Information Center

    Hut, Piet; Sussman, Gerald Jay

    1987-01-01

    Discusses some of the contributions that high-speed computing is making to the study of science. Emphasizes the use of computers in exploring complicated systems without the simplification required in traditional methods of observation and experimentation. Provides examples of computer assisted investigations in astronomy and physics. (TW)

  20. Three dimensional visualization in support of Yucca Mountain Site characterization activities

    SciTech Connect

    Brickey, D.W.

    1992-02-01

    An understanding of the geologic and hydrologic environment for the proposed high-level nuclear waste repository at Yucca Mountain, NV is a critical component of site characterization activities. Conventional methods allow visualization of geologic data in only two or two and a half dimensions. Recent advances in computer workstation hardware and software now make it possible to create interactive three dimensional visualizations. Visualization software has been used to create preliminary two-, two-and-a-half-, and three-dimensional visualizations of Yucca Mountain structure and stratigraphy. The three dimensional models can also display lithologically dependent or independent parametric data. Yucca Mountain site characterization studies that will be supported by this capability include structural, lithologic, and hydrologic modeling, and repository design.