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Sample records for advection transport algorithm

  1. Numerical advection algorithms and their role in atmospheric transport and chemistry models

    NASA Technical Reports Server (NTRS)

    Rood, Richard B.

    1987-01-01

    During the last 35 years, well over 100 algorithms for modeling advection processes have been described and tested. This review summarizes the development and improvements that have taken place. The nature of the errors caused by numerical approximation to the advection equation are highlighted. Then the particular devices that have been proposed to remedy these errors are discussed. The extensive literature comparing transport algorithms is reviewed. Although there is no clear cut 'best' algorithm, several conclusions can be made. Spectral and pseudospectral techniques consistently provide the highest degree of accuracy, but expense and difficulties assuring positive mixing ratios are serious drawbacks. Schemes which consider fluid slabs bounded by grid points (volume schemes), rather than the simple specification of constituent values at the grid points, provide accurate positive definite results.

  2. Two-dimensional atmospheric transport and chemistry model - Numerical experiments with a new advection algorithm

    NASA Technical Reports Server (NTRS)

    Shia, Run-Lie; Ha, Yuk Lung; Wen, Jun-Shan; Yung, Yuk L.

    1990-01-01

    Extensive testing of the advective scheme proposed by Prather (1986) has been carried out in support of the California Institute of Technology-Jet Propulsion Laboratory two-dimensional model of the middle atmosphere. The original scheme is generalized to include higher-order moments. In addition, it is shown how well the scheme works in the presence of chemistry as well as eddy diffusion. Six types of numerical experiments including simple clock motion and pure advection in two dimensions have been investigated in detail. By comparison with analytic solutions, it is shown that the new algorithm can faithfully preserve concentration profiles, has essentially no numerical diffusion, and is superior to a typical fourth-order finite difference scheme.

  3. Efficient mass transport by optical advection

    NASA Astrophysics Data System (ADS)

    Kajorndejnukul, Veerachart; Sukhov, Sergey; Dogariu, Aristide

    2015-10-01

    Advection is critical for efficient mass transport. For instance, bare diffusion cannot explain the spatial and temporal scales of some of the cellular processes. The regulation of intracellular functions is strongly influenced by the transport of mass at low Reynolds numbers where viscous drag dominates inertia. Mimicking the efficacy and specificity of the cellular machinery has been a long time pursuit and, due to inherent flexibility, optical manipulation is of particular interest. However, optical forces are relatively small and cannot significantly modify diffusion properties. Here we show that the effectiveness of microparticle transport can be dramatically enhanced by recycling the optical energy through an effective optical advection process. We demonstrate theoretically and experimentally that this new advection mechanism permits an efficient control of collective and directional mass transport in colloidal systems. The cooperative long-range interaction between large numbers of particles can be optically manipulated to create complex flow patterns, enabling efficient and tunable transport in microfluidic lab-on-chip platforms.

  4. Efficient mass transport by optical advection

    PubMed Central

    Kajorndejnukul, Veerachart; Sukhov, Sergey; Dogariu, Aristide

    2015-01-01

    Advection is critical for efficient mass transport. For instance, bare diffusion cannot explain the spatial and temporal scales of some of the cellular processes. The regulation of intracellular functions is strongly influenced by the transport of mass at low Reynolds numbers where viscous drag dominates inertia. Mimicking the efficacy and specificity of the cellular machinery has been a long time pursuit and, due to inherent flexibility, optical manipulation is of particular interest. However, optical forces are relatively small and cannot significantly modify diffusion properties. Here we show that the effectiveness of microparticle transport can be dramatically enhanced by recycling the optical energy through an effective optical advection process. We demonstrate theoretically and experimentally that this new advection mechanism permits an efficient control of collective and directional mass transport in colloidal systems. The cooperative long-range interaction between large numbers of particles can be optically manipulated to create complex flow patterns, enabling efficient and tunable transport in microfluidic lab-on-chip platforms. PMID:26440069

  5. AN EXACT PEAK CAPTURING AND OSCILLATION-FREE SCHEME TO SOLVE ADVECTION-DISPERSION TRANSPORT EQUATIONS

    EPA Science Inventory

    An exact peak capturing and essentially oscillation-free (EPCOF) algorithm, consisting of advection-dispersion decoupling, backward method of characteristics, forward node tracking, and adaptive local grid refinement, is developed to solve transport equations. This algorithm repr...

  6. Advective turbulent transport in the fluid plasma

    NASA Astrophysics Data System (ADS)

    Min, Byung-Hoon; An, Chan-Yong; Kim, Chang-Bae

    2013-10-01

    The Hasegawa-Wakatani model (HWM) has been employed in pedagogical analyses of the physics behind the behavior of the tokamak plasmas. In addition to the geometric simplicity HWM has an appealing feature of sustaining autonomous quasi-steady state, unstable modes providing the power that is being transported by the nonlinear interactions and is eventually dissipated by the collisional damping at small scales. Emergence of the zonal flow out of the turbulence is a main candidate to cause the transition from the low plasma confinement to the high mode. In the study of such LH transition with the HWM, the adiabaticity parameter has been shown to play an important role in forcing the zonal flow that results in the regulation of the drift-wave turbulence. Instead of concentrating on the physics of the feedback loop between the turbulence and the zonal flow the present study focuses on the presence of the advective transport of the energy. Numerical simulations of HWM are performed and the connections between the advective transport and the zonal flow will be presented. This work was supported by the Supercpmputing Center/Korea Institute of Science and Technology Information with supercomputing resources including technical support (KSC-2013-C1-009).

  7. Construction of the SILAM Eulerian atmospheric dispersion model based on the advection algorithm of Michael Galperin

    NASA Astrophysics Data System (ADS)

    Sofiev, M.; Vira, J.; Kouznetsov, R.; Prank, M.; Soares, J.; Genikhovich, E.

    2015-11-01

    The paper presents the transport module of the System for Integrated modeLling of Atmospheric coMposition SILAM v.5 based on the advection algorithm of Michael Galperin. This advection routine, so far weakly presented in the international literature, is positively defined, stable at any Courant number, and efficient computationally. We present the rigorous description of its original version, along with several updates that improve its monotonicity and shape preservation, allowing for applications to long-living species in conditions of complex atmospheric flows. The scheme is connected with other parts of the model in a way that preserves the sub-grid mass distribution information that is a cornerstone of the advection algorithm. The other parts include the previously developed vertical diffusion algorithm combined with dry deposition, a meteorological pre-processor, and chemical transformation modules. The quality of the advection routine is evaluated using a large set of tests. The original approach has been previously compared with several classic algorithms widely used in operational dispersion models. The basic tests were repeated for the updated scheme and extended with real-wind simulations and demanding global 2-D tests recently suggested in the literature, which allowed one to position the scheme with regard to sophisticated state-of-the-art approaches. The advection scheme performance was fully comparable with other algorithms, with a modest computational cost. This work was the last project of Dr. Sci. Michael Galperin, who passed away on 18 March 2008.

  8. Nonlinear Advection Algorithms Applied to Inter-related Tracers: Errors and Implications for Modeling Aerosol-Cloud Interactions

    SciTech Connect

    Ovtchinnikov, Mikhail; Easter, Richard C.

    2009-02-01

    Monotonicity constraints and gradient preserving flux corrections employed by many advection algorithms used in atmospheric models make these algorithms non-linear. Consequently, any relations among model variables transported separately are not necessarily preserved in such models. These errors cannot be revealed by traditional algorithm testing based on advection of a single tracer. New type of tests are developed and conducted to evaluate the preservation of a sum of several number mixing ratios advected independently of each other, as is the case, for example, in models using bin or sectional representation of aerosol or cloud particle size distribution. The tests show that when three tracers are advected in 1D uniform constant velocity flow, local errors in the sum can be on the order of 10%. When cloud-like interactions are allowed among the tracers, errors in total sum of three mixing ratios can reach up to 30%. Several approaches to eliminate the error are suggested, all based on advecting the sum as a separate variable and then normalizing mixing ratios for individual tracers to match the total sum. A simple scalar normalization preserves the total number mixing ratio and positive definiteness of the variables but the monotonicity constraint for individual tracers is no longer maintained. More involved flux normalization procedures are developed for the flux based advection algorithms to maintain the monotonicity for individual scalars and their sum.

  9. Advective and diffusive cosmic ray transport in galactic haloes

    NASA Astrophysics Data System (ADS)

    Heesen, Volker; Dettmar, Ralf-Jürgen; Krause, Marita; Beck, Rainer; Stein, Yelena

    2016-05-01

    We present 1D cosmic ray transport models, numerically solving equations of pure advection and diffusion for the electrons and calculating synchrotron emission spectra. We find that for exponential halo magnetic field distributions advection leads to approximately exponential radio continuum intensity profiles, whereas diffusion leads to profiles that can be better approximated by a Gaussian function. Accordingly, the vertical radio spectral profiles for advection are approximately linear, whereas for diffusion they are of `parabolic' shape. We compare our models with deep Australia Telescope Compact Array observations of two edge-on galaxies, NGC 7090 and 7462, at λλ 22 and 6 cm. Our result is that the cosmic ray transport in NGC 7090 is advection dominated with V=150^{+80}_{-30} km s^{-1}, and that the one in NGC 7462 is diffusion dominated with D=3.0± 1.0 × 10^{28}E_GeV^{0.5} cm^2 s^{-1}. NGC 7090 has both a thin and thick radio disc with respective magnetic field scale heights of hB1 = 0.8 ± 0.1 kpc and hB2 = 4.7 ± 1.0 kpc. NGC 7462 has only a thick radio disc with hB2 = 3.8 ± 1.0 kpc. In both galaxies, the magnetic field scale heights are significantly smaller than what estimates from energy equipartition would suggest. A non-negligible fraction of cosmic ray electrons can escape from NGC 7090, so that this galaxy is not an electron calorimeter.

  10. CONTAMINANT TRANSPORT IN SEDIMENT UNDER THE INFLUENCE OF ADVECTIVE FLUX

    EPA Science Inventory

    Chemical flux across the sediment/water interface is controlled by a combination of diffusive, dispersive and advective processes. The advective process is a function of submarine groundwater discharge and tidal effects. In areas where surface water interacts with groundwater, ...

  11. Sediment transport in a surface-advected estuarine plume

    NASA Astrophysics Data System (ADS)

    Yao, H. Y.; Leonardi, N.; Li, J. F.; Fagherazzi, S.

    2016-03-01

    The interplay between suspended-sediment transport and plume hydrodynamics in a surface-advected estuarine plume is studied using a three-dimensional numerical model. Our analysis focuses on the formation of a sediment-rich alongshore current and on the effect of sediments on the structure of the recirculating freshwater bulge. We introduce the ratio Y between the traveling time of sediment along the bulge edge and the settling timescale. When Y <1, suspended sediments enter the alongshore coastal current. When Y >1 the sediments are deposited within the bulge. We find that a critical range of settling velocities exist above which no transport in the costal current is allowed. Critical settling-velocity values increase with river discharge. Therefore, low magnitude and long-lasting floods promote sediment sorting in the continental shelf. We further find that, for a given flood duration, intermediate flood magnitudes at the limit between subcritical and supercritical flow maximize the alongshore sediment transport. Similarly, for a fixed input of water and sediments, intermediate discharge durations maximize alongshore sediment transport.

  12. Fractional Advective-Dispersive Equation as a Model of Solute Transport in Porous Media

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding and modeling transport of solutes in porous media is a critical issue in the environmental protection. The common model is the advective-dispersive equation (ADE) describing the superposition of the advective transport and the Brownian motion in water-filled pore space. Deviations from...

  13. The nature and role of advection in advection-diffusion equations used for modelling bed load transport

    NASA Astrophysics Data System (ADS)

    Ancey, Christophe; Bohorquez, Patricio; Heyman, Joris

    2016-04-01

    The advection-diffusion equation arises quite often in the context of sediment transport, e.g., for describing time and space variations in the particle activity (the solid volume of particles in motion per unit streambed area). Stochastic models can also be used to derive this equation, with the significant advantage that they provide information on the statistical properties of particle activity. Stochastic models are quite useful when sediment transport exhibits large fluctuations (typically at low transport rates), making the measurement of mean values difficult. We develop an approach based on birth-death Markov processes, which involves monitoring the evolution of the number of particles moving within an array of cells of finite length. While the topic has been explored in detail for diffusion-reaction systems, the treatment of advection has received little attention. We show that particle advection produces nonlocal effects, which are more or less significant depending on the cell size and particle velocity. Albeit nonlocal, these effects look like (local) diffusion and add to the intrinsic particle diffusion (dispersal due to velocity fluctuations), with the important consequence that local measurements depend on both the intrinsic properties of particle displacement and the dimensions of the measurement system.

  14. SEBAL-A: A remote sensing ET algorithm that accounts for advection with limited data. Part II: Test for transferability

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Because the Surface Energy Balance Algorithm for Land (SEBAL) tends to underestimate ET under conditions of advection, the model was modified by incorporating an advection component as part of the energy usable for crop evapotranspiration (ET). The modification involved the estimation of advected en...

  15. Thermally driven advection for radioxenon transport from an underground nuclear explosion

    NASA Astrophysics Data System (ADS)

    Sun, Yunwei; Carrigan, Charles R.

    2016-05-01

    Barometric pumping is a ubiquitous process resulting in migration of gases in the subsurface that has been studied as the primary mechanism for noble gas transport from an underground nuclear explosion (UNE). However, at early times following a UNE, advection driven by explosion residual heat is relevant to noble gas transport. A rigorous measure is needed for demonstrating how, when, and where advection is important. In this paper three physical processes of uncertain magnitude (oscillatory advection, matrix diffusion, and thermally driven advection) are parameterized by using boundary conditions, system properties, and source term strength. Sobol' sensitivity analysis is conducted to evaluate the importance of all physical processes influencing the xenon signals. This study indicates that thermally driven advection plays a more important role in producing xenon signals than oscillatory advection and matrix diffusion at early times following a UNE, and xenon isotopic ratios are observed to have both time and spatial dependence.

  16. Magnetic helicity transport in the advective gauge family

    SciTech Connect

    Candelaresi, Simon; Brandenburg, Axel; Hubbard, Alexander; Mitra, Dhrubaditya

    2011-01-15

    Magnetic helicity fluxes are investigated in a family of gauges in which the contribution from ideal magnetohydrodynamics takes the form of a purely advective flux. Numerical simulations of magnetohydrodynamic turbulence in this advective gauge family exhibit instabilities triggered by the build-up of unphysical irrotational contributions to the magnetic vector potential. As a remedy, the vector potential is evolved in a numerically well behaved gauge, from which the advective vector potential is obtained by a gauge transformation. In the kinematic regime, the magnetic helicity density evolves similarly to a passive scalar when resistivity is small and turbulent mixing is mild, i.e., when the fluid Reynolds number is not too large. In the dynamical regime, resistive contributions to the magnetic helicity flux in the advective gauge are found to be significant owing to the development of small length scales in the irrotational part of the magnetic vector potential.

  17. Analytical solution for the advection-dispersion transport equation in layered media

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The advection-dispersion transport equation with first-order decay was solved analytically for multi-layered media using the classic integral transform technique (CITT). The solution procedure used an associated non-self-adjoint advection-diffusion eigenvalue problem that had the same form and coef...

  18. Theory of advection-driven long range biotic transport

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We propose a simple mechanistic model to examine the effects of advective flow on the spread of fungal diseases spread by wind-blown spores. The model is defined by a set of two coupled non-linear partial differential equations for spore densities. One equation describes the long-distance advectiv...

  19. Contour advection with surgery: A technique for investigating finescale structure in tracer transport

    NASA Technical Reports Server (NTRS)

    Waugh, Darryn W.; Plumb, R. Alan

    1994-01-01

    We present a trajectory technique, contour advection with surgery (CAS), for tracing the evolution of material contours in a specified (including observed) evolving flow. CAS uses the algorithms developed by Dritschel for contour dynamics/surgery to trace the evolution of specified contours. The contours are represented by a series of particles, which are advected by a specified, gridded, wind distribution. The resolution of the contours is preserved by continually adjusting the number of particles, and finescale features are produced that are not present in the input data (and cannot easily be generated using standard trajectory techniques). The reliability, and dependence on the spatial and temporal resolution of the wind field, of the CAS procedure is examined by comparisons with high-resolution numerical data (from contour dynamics calculations and from a general circulation model), and with routine stratospheric analyses. These comparisons show that the large-scale motions dominate the deformation field and that CAS can accurately reproduce small scales from low-resolution wind fields. The CAS technique therefore enables examination of atmospheric tracer transport at previously unattainable resolution.

  20. Contributions of advective and diffusive oxygen transport through multilayer composite caps over mine waste.

    PubMed

    Kim, Hong; Benson, Craig H

    2004-07-01

    The relative contributions of four mechanisms of oxygen transport in multilayer composite (MLC) caps placed over oxygen-consuming mine waste were evaluated using numerical and analytical methods. MLC caps are defined here as caps consisting of earthen and geosynthetic (polymeric) components where a composite barrier layer consisting of a geomembrane (1-2 mm thick polymeric sheet) overlying a clay layer is the primary barrier to transport. The transport mechanisms that were considered are gas-phase advective transport, gas-phase diffusive transport, liquid-phase advective transport via infiltrating precipitation and liquid-phase diffusive transport. A numerical model was developed to simulate gas-phase advective-diffusive transport of oxygen through a multilayer cap containing seven layers. This model was also used to simulate oxygen diffusion in the liquid phase. An approximate analytical method was used to compute the advective flux of oxygen in the liquid phase. The numerical model was verified for limiting cases using an analytical solution. Comparisons were also made between model predictions and field data for earthen caps reported by others. Results of the analysis show that the dominant mechanism for oxygen transport through MLC caps is gas-phase diffusion. For the cases that were considered, the gas-phase diffusive flux typically comprises at least 99% of the total oxygen flux. Thus, designers of MLC caps should focus on design elements and features that will limit diffusion of gas-phase oxygen. PMID:15145567

  1. Curves to determine the relative importance of advection and dispersion for solute and vapor transport

    USGS Publications Warehouse

    Garges, J.A.; Baehr, A.L.

    1998-01-01

    The relative importance of advection and dispersion for both solute and vapor transport can be determined from type curves or concentration, flux, or cumulative flux. The dimensionless form of the type curves provides a means to directly evaluate the importance of mass transport by advection relative to that of mass transport by diffusion and dispersion. Type curves based on an analytical solution to the advection-dispersion equation are plotted in terms of dimensionless time and Peclet number. Flux and cumulative flux type curves provide additional rationale for transport regime determination in addition to the traditional concentration type curves. The extension of type curves to include vapor transport with phase partitioning in the unsaturated zone is a new development. Type curves for negative Peclet numbers also are presented. A negative Peclet number characterizes a problem in which one direction of flow is toward the contamination source, and thereby diffusion and advection can act in opposite directions. Examples are the diffusion of solutes away from the downgradient edge of a pump-and-treat capture zone, the upward diffusion of vapors through the unsaturated zone with recharge, and the diffusion of solutes through a low hydraulic conductivity cutoff wall with an inward advective gradient.

  2. General solution of a fractional diffusion-advection equation for solar cosmic-ray transport

    NASA Astrophysics Data System (ADS)

    Rocca, M. C.; Plastino, A. R.; Plastino, A.; Ferri, G. L.; de Paoli, A.

    2016-04-01

    In this effort we exactly solve the fractional diffusion-advection equation for solar cosmic-ray transport and give its general solution in terms of hypergeometric distributions. Numerical analysis of this equation shows that its solutions resemble power-laws.

  3. Exact analytical solutions for contaminant transport in rivers 1. The equilibrium advection-dispersion equation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analytical solutions of the advection-dispersion equation and related models are indispensable for predicting or analyzing contaminant transport processes in streams and rivers, as well as in other surface water bodies. Many useful analytical solutions originated in disciplines other than surface-w...

  4. Scaling of geochemical reaction rates via advective solute transport.

    PubMed

    Hunt, A G; Ghanbarian, B; Skinner, T E; Ewing, R P

    2015-07-01

    Transport in porous media is quite complex, and still yields occasional surprises. In geological porous media, the rate at which chemical reactions (e.g., weathering and dissolution) occur is found to diminish by orders of magnitude with increasing time or distance. The temporal rates of laboratory experiments and field observations differ, and extrapolating from laboratory experiments (in months) to field rates (in millions of years) can lead to order-of-magnitude errors. The reactions are transport-limited, but characterizing them using standard solute transport expressions can yield results in agreement with experiment only if spurious assumptions and parameters are introduced. We previously developed a theory of non-reactive solute transport based on applying critical path analysis to the cluster statistics of percolation. The fractal structure of the clusters can be used to generate solute distributions in both time and space. Solute velocities calculated from the temporal evolution of that distribution have the same time dependence as reaction-rate scaling in a wide range of field studies and laboratory experiments, covering some 10 decades in time. The present theory thus both explains a wide range of experiments, and also predicts changes in the scaling behavior in individual systems with increasing time and/or length scales. No other theory captures these variations in scaling by invoking a single physical mechanism. Because the successfully predicted chemical reactions include known results for silicate weathering rates, our theory provides a framework for understanding changes in the global carbon cycle, including its effects on extinctions, climate change, soil production, and denudation rates. It further provides a basis for understanding the fundamental time scales of hydrology and shallow geochemistry, as well as the basis of industrial agriculture. PMID:26232976

  5. Scaling of geochemical reaction rates via advective solute transport

    NASA Astrophysics Data System (ADS)

    Hunt, A. G.; Ghanbarian, B.; Skinner, T. E.; Ewing, R. P.

    2015-07-01

    Transport in porous media is quite complex, and still yields occasional surprises. In geological porous media, the rate at which chemical reactions (e.g., weathering and dissolution) occur is found to diminish by orders of magnitude with increasing time or distance. The temporal rates of laboratory experiments and field observations differ, and extrapolating from laboratory experiments (in months) to field rates (in millions of years) can lead to order-of-magnitude errors. The reactions are transport-limited, but characterizing them using standard solute transport expressions can yield results in agreement with experiment only if spurious assumptions and parameters are introduced. We previously developed a theory of non-reactive solute transport based on applying critical path analysis to the cluster statistics of percolation. The fractal structure of the clusters can be used to generate solute distributions in both time and space. Solute velocities calculated from the temporal evolution of that distribution have the same time dependence as reaction-rate scaling in a wide range of field studies and laboratory experiments, covering some 10 decades in time. The present theory thus both explains a wide range of experiments, and also predicts changes in the scaling behavior in individual systems with increasing time and/or length scales. No other theory captures these variations in scaling by invoking a single physical mechanism. Because the successfully predicted chemical reactions include known results for silicate weathering rates, our theory provides a framework for understanding changes in the global carbon cycle, including its effects on extinctions, climate change, soil production, and denudation rates. It further provides a basis for understanding the fundamental time scales of hydrology and shallow geochemistry, as well as the basis of industrial agriculture.

  6. Gyrokinetic Studies of ETG Turbulence in NSTX, and Comparisons of Advection Algorithms

    NASA Astrophysics Data System (ADS)

    Hammett, G. W.; Peterson, J. L.; Mikkelsen, D. R.; Kaye, S. M.; Waltz, R. E.; Candy, J.

    2009-05-01

    Electron temperature gradient (ETG) driven turbulence has been predicted to be important in some parameter regimes. High-k fluctuations have recently been measured in the National Spherical Torus Experiment (NSTX), at kθρe˜0.1-0.4, in the range of ETG turbulence. We are undertaking studies of ETG turbulence for NSTX cases using the GYRO gyrokinetic code. Among other results, we will show the dependence of some of the linear ETG properties on magnetic shear, q, and ZeffTe/Ti. Microtearing may also be important in some cases. On another topic, we will compare various advection algorithms on simple 1-D and 2-D test problems. The edge region in a magnetic fusion device has very steep density variations, which can cause problems for standard advection algorithms. Gibb's phenomena can lead to negative overshoots in the density solution; however, modern high-order upwind methods, developed initially for shock capturing, can preserve positivity of density, making them useful for edge gyrokinetic simulations. W. Dorland, F. Jenko, et al., Phys. Rev. Lett. 85, 5579 (2000). E. Mazzucato, D. R. Smith, et al., Phys. Rev. Lett. 101, 075001 (2008)

  7. Correcting transport errors during advection of aerosol and cloud moment sequences in eulerian models

    SciTech Connect

    McGraw R.

    2012-03-01

    Moment methods are finding increasing usage for simulations of particle population balance in box models and in more complex flows including two-phase flows. These highly efficient methods have nevertheless had little impact to date for multi-moment representation of aerosols and clouds in atmospheric models. There are evidently two reasons for this: First, atmospheric models, especially if the goal is to simulate climate, tend to be extremely complex and take many man-years to develop. Thus there is considerable inertia to the implementation of novel approaches. Second, and more fundamental, the nonlinear transport algorithms designed to reduce numerical diffusion during advection of various species (tracers) from cell to cell, in the typically coarse grid arrays of these models, can and occasionally do fail to preserve correlations between the moments. Other correlated tracers such as isotopic abundances, composition of aerosol mixtures, hydrometeor phase, etc., are subject to this same fate. In the case of moments, this loss of correlation can and occasionally does give rise to unphysical moment sets. When this happens the simulation can come to a halt. Following a brief description and review of moment methods, the goal of this paper is to present two new approaches that both test moment sequences for validity and correct them when they fail. The new approaches work on individual grid cells without requiring stored information from previous time-steps or neighboring cells.

  8. Analytical solutions of the one-dimensional advection-dispersion solute transport equation subject to time-dependent boundary conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analytical solutions of the advection-dispersion solute transport equation remain useful for a large number of applications in science and engineering. In this paper we extend the Duhamel theorem, originally established for diffusion type problems, to the case of advective-dispersive transport subj...

  9. THE INTERPLAY BETWEEN GEOCHEMICAL REACTIONS AND ADVECTION-DISPERSION IN CONTAMINANT TRANSPORT AT A URANIUM MILL TAILINGS SITE

    EPA Science Inventory

    It is well known that the fate and transport of contaminants in the subsurface are controlled by complex processes including advection, dispersion-diffusion, and chemical reactions. However, the interplay between the physical transport processes and chemical reactions, and their...

  10. Anomalous transport regimes and asymptotic concentration distributions in the presence of advection and diffusion on a comb structure

    NASA Astrophysics Data System (ADS)

    Dvoretskaya, Olga A.; Kondratenko, Peter S.

    2009-04-01

    We study the transport of impurity particles on a comb structure in the presence of advection. The main body concentration and asymptotic concentration distributions are obtained. Seven different transport regimes occur on the comb structure with finite teeth: classical diffusion, advection, quasidiffusion, subdiffusion, slow classical diffusion, and two kinds of slow advection. Quasidiffusion deserves special attention. It is characterized by a linear growth of the mean-square displacement. However, quasidiffusion is an anomalous transport regime. We established that a change in transport regimes in time leads to a change in regimes in space. Concentration tails have a cascade structure, namely, consisting of several parts.

  11. A Comparative Study of Indoor Radon Contributed by Diffusive and Advective Transport through Intact Concrete

    NASA Astrophysics Data System (ADS)

    Chauhan, R. P.; Kumar, Amit

    The present work is aimed that out of diffusive and advective transport which is dominant process for indoor radon entry under normal room conditions. For this purpose the radon diffusion coefficient and permeability of concrete were measured by specially designed experimental set up. The radon diffusion coefficient of concrete was measured by continuous radon monitor. The measured value was (3.78 ± 0.39)×10-8 m2/s and found independent of the radon gas concentration in source chamber. The radon permeability of concrete varied between 1.85×10-17 to 1.36×10-15 m2 for the bulk pressure difference fewer than 20 Pa to 73.3 kPa. From the measured diffusion coefficient and absolute permeability, the radon flux from the concrete surface having concentrations gradient 12-40 kBq/m3 and typical floor thickness 0.1 m was calculated by the application of Fick and Darcy laws. Using the measured flux attributable to diffusive and advective transport, the indoor radon concentration for a typical Indian model room having dimension (5×6×7) m3 was calculated under average room ventilation (0.63 h-1). The results showed that the contribution of diffusive transport through intact concrete is dominant over the advective transport, as expected from the low values of concrete permeability.

  12. Developing a modified SEBAL algorithm that is responsive to advection by using limited weather data

    NASA Astrophysics Data System (ADS)

    Mkhwanazi, Mcebisi

    The use of Remote Sensing ET algorithms in water management, especially for agricultural purposes is increasing, and there are more models being introduced. The Surface Energy Balance Algorithm for Land (SEBAL) and its variant, Mapping Evapotranspiration with Internalized Calibration (METRIC) are some of the models that are being widely used. While SEBAL has several advantages over other RS models, including that it does not require prior knowledge of soil, crop and other ground details, it has the downside of underestimating evapotranspiration (ET) on days when there is advection, which may be in most cases in arid and semi-arid areas. METRIC, however has been modified to be able to account for advection, but in doing so it requires hourly weather data. In most developing countries, while accurate estimates of ET are required, the weather data necessary to use METRIC may not be available. This research therefore was meant to develop a modified version of SEBAL that would require minimal weather data that may be available in these areas, and still estimate ET accurately. The data that were used to develop this model were minimum and maximum temperatures, wind data, preferably the run of wind in the afternoon, and wet bulb temperature. These were used to quantify the advected energy that would increase ET in the field. This was a two-step process; the first was developing the model for standard conditions, which was described as a healthy cover of alfalfa, 40-60 cm tall and not short of water. Under standard conditions, when estimated ET using modified SEBAL was compared with lysimeter-measured ET, the modified SEBAL model had a Mean Bias Error (MBE) of 2.2 % compared to -17.1 % from the original SEBAL. The Root Mean Square Error (RMSE) was lower for the modified SEBAL model at 10.9 % compared to 25.1 % for the original SEBAL. The modified SEBAL model, developed on an alfalfa field in Rocky Ford, was then tested on other crops; beans and wheat. It was also tested on

  13. Analytical solution of the advection-diffusion transport equation using a change-of-variable and integral transform technique

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper presents a formal exact solution of the linear advection-diffusion transport equation with constant coefficients for both transient and steady-state regimes. A classical mathematical substitution transforms the original advection-diffusion equation into an exclusively diffusive equation. ...

  14. Parallel simulation of particle transport in an advection field applied to volcanic explosive eruptions

    NASA Astrophysics Data System (ADS)

    Künzli, Pierre; Tsunematsu, Kae; Albuquerque, Paul; Falcone, Jean-Luc; Chopard, Bastien; Bonadonna, Costanza

    2016-04-01

    Volcanic ash transport and dispersal models typically describe particle motion via a turbulent velocity field. Particles are advected inside this field from the moment they leave the vent of the volcano until they deposit on the ground. Several techniques exist to simulate particles in an advection field such as finite difference Eulerian, Lagrangian-puff or pure Lagrangian techniques. In this paper, we present a new flexible simulation tool called TETRAS (TEphra TRAnsport Simulator) based on a hybrid Eulerian-Lagrangian model. This scheme offers the advantages of being numerically stable with no numerical diffusion and easily parallelizable. It also allows us to output particle atmospheric concentration or ground mass load at any given time. The model is validated using the advection-diffusion analytical equation. We also obtained a good agreement with field observations of the tephra deposit associated with the 2450 BP Pululagua (Ecuador) and the 1996 Ruapehu (New Zealand) eruptions. As this kind of model can lead to computationally intensive simulations, a parallelization on a distributed memory architecture was developed. A related performance model, taking into account load imbalance, is proposed and its accuracy tested.

  15. Stochastic interpretation of the advection-diffusion equation and its relevance to bed load transport

    NASA Astrophysics Data System (ADS)

    Ancey, C.; Bohorquez, P.; Heyman, J.

    2015-12-01

    The advection-diffusion equation is one of the most widespread equations in physics. It arises quite often in the context of sediment transport, e.g., for describing time and space variations in the particle activity (the solid volume of particles in motion per unit streambed area). Phenomenological laws are usually sufficient to derive this equation and interpret its terms. Stochastic models can also be used to derive it, with the significant advantage that they provide information on the statistical properties of particle activity. These models are quite useful when sediment transport exhibits large fluctuations (typically at low transport rates), making the measurement of mean values difficult. Among these stochastic models, the most common approach consists of random walk models. For instance, they have been used to model the random displacement of tracers in rivers. Here we explore an alternative approach, which involves monitoring the evolution of the number of particles moving within an array of cells of finite length. Birth-death Markov processes are well suited to this objective. While the topic has been explored in detail for diffusion-reaction systems, the treatment of advection has received no attention. We therefore look into the possibility of deriving the advection-diffusion equation (with a source term) within the framework of birth-death Markov processes. We show that in the continuum limit (when the cell size becomes vanishingly small), we can derive an advection-diffusion equation for particle activity. Yet while this derivation is formally valid in the continuum limit, it runs into difficulty in practical applications involving cells or meshes of finite length. Indeed, within our stochastic framework, particle advection produces nonlocal effects, which are more or less significant depending on the cell size and particle velocity. Albeit nonlocal, these effects look like (local) diffusion and add to the intrinsic particle diffusion (dispersal due

  16. Advective-diffusive/dispersive transport of chemically reacting species in hydrothermal systems. Final report, FY83-85

    SciTech Connect

    Lichtner, P.C.; Helgeson, H.C.

    1986-06-20

    A general formulation of multi-phase fluid flow coupled to chemical reactions was developed based on a continuum description of porous media. A preliminary version of the computer code MCCTM was constructed which implemented the general equations for a single phase fluid. The computer code MCCTM incorporates mass transport by advection-diffusion/dispersion in a one-dimensional porous medium coupled to reversible and irreversible, homogeneous and heterogeneous chemical reactions. These reactions include aqueous complexing, oxidation/reduction reactions, ion exchange, and hydrolysis reactions of stoichiometric minerals. The code MCCTM uses a fully implicit finite difference algorithm. The code was tested against analytical calculations. Applications of the code included investigation of the propagation of sharp chemical reaction fronts, metasomatic alteration of microcline at elevated temperatures and pressures, and ion-exchange in a porous column. Finally numerical calculations describing fluid flow in crystalline rock in the presence of a temperature gradient were compared with experimental results for quartzite.

  17. Universal limiter for transient interpolation modeling of the advective transport equations: The ULTIMATE conservative difference scheme

    NASA Technical Reports Server (NTRS)

    Leonard, B. P.

    1988-01-01

    A fresh approach is taken to the embarrassingly difficult problem of adequately modeling simple pure advection. An explicit conservative control-volume formation makes use of a universal limiter for transient interpolation modeling of the advective transport equations. This ULTIMATE conservative difference scheme is applied to unsteady, one-dimensional scalar pure advection at constant velocity, using three critical test profiles: an isolated sine-squared wave, a discontinuous step, and a semi-ellipse. The goal, of course, is to devise a single robust scheme which achieves sharp monotonic resolution of the step without corrupting the other profiles. The semi-ellipse is particularly challenging because of its combination of sudden and gradual changes in gradient. The ULTIMATE strategy can be applied to explicit conservation schemes of any order of accuracy. Second-order schemes are unsatisfactory, showing steepening and clipping typical of currently popular so-called high resolution shock-capturing of TVD schemes. The ULTIMATE third-order upwind scheme is highly satisfactory for most flows of practical importance. Higher order methods give predictably better step resolution, although even-order schemes generate a (monotonic) waviness in the difficult semi-ellipse simulation. Little is to be gained above ULTIMATE fifth-order upwinding which gives results close to the ultimate for which one might hope.

  18. Advective transport and decomposition of chain-forming planktonic diatoms in permeable sediments

    NASA Astrophysics Data System (ADS)

    Ehrenhauss, Sandra; Huettel, Markus

    2004-09-01

    In laboratory chamber experiments we demonstrate that permeable sediments (>7×10 -12 m 2) exposed to boundary flows filter chain-forming coastal bloom diatoms ( Skeletonema costatum and Thalassiosira rotula) from the water column, causing rapid transfer of fresh organic particulate matter into sediment layers as deep as 5 cm within 72 h. The penetration depth of the diatoms depends on the permeability of the bed and the length of the chains. Long chains were not transported as deep into the sediment as short chains or single cells. The fast advective transfer of phytoplankton cells into sandy sediments may be an important process facilitating organic matter uptake and preventing resuspension of deposited organic material in high-energy coastal environments. High advective flushing rates in medium- and coarse-grained sandy sediments enhanced the mineralisation of the trapped diatoms (2300 to 3200 μmol C m -2 d -1), stimulated benthic oxygen consumption (2300 to 3000 μmol O 2 m -2 d -1), as well as nitrification (up to 20 μmol NO 3- m -2 d -1), relative to sediment where diffusion dominated the solute exchange. Advective solute exchange rates that increase with increasing permeability prevent the accumulation of Si(OH) 4 near the dissolving frustules and in the pore water, leading to an effective recycling of dissolved silica to the production process in the water column (95 to 101 μmol Si(OH) 4 m -2 d -1). This process may also enhance dissolution rates of the deposited opal in coarse-grained sands by maintaining higher degrees of undersaturation than in fine-grained sediments. Our results suggest that advective filtration of planktonic diatoms into permeable sediments increases mineralisation and recycling of Si(OH) 4 and organic matter in high energetic shelf areas.

  19. Analytical solutions of a fractional diffusion-advection equation for solar cosmic-ray transport

    SciTech Connect

    Litvinenko, Yuri E.; Effenberger, Frederic

    2014-12-01

    Motivated by recent applications of superdiffusive transport models to shock-accelerated particle distributions in the heliosphere, we analytically solve a one-dimensional fractional diffusion-advection equation for the particle density. We derive an exact Fourier transform solution, simplify it in a weak diffusion approximation, and compare the new solution with previously available analytical results and with a semi-numerical solution based on a Fourier series expansion. We apply the results to the problem of describing the transport of energetic particles, accelerated at a traveling heliospheric shock. Our analysis shows that significant errors may result from assuming an infinite initial distance between the shock and the observer. We argue that the shock travel time should be a parameter of a realistic superdiffusive transport model.

  20. Analytical Solutions of a Fractional Diffusion-advection Equation for Solar Cosmic-Ray Transport

    NASA Astrophysics Data System (ADS)

    Litvinenko, Yuri E.; Effenberger, Frederic

    2014-12-01

    Motivated by recent applications of superdiffusive transport models to shock-accelerated particle distributions in the heliosphere, we analytically solve a one-dimensional fractional diffusion-advection equation for the particle density. We derive an exact Fourier transform solution, simplify it in a weak diffusion approximation, and compare the new solution with previously available analytical results and with a semi-numerical solution based on a Fourier series expansion. We apply the results to the problem of describing the transport of energetic particles, accelerated at a traveling heliospheric shock. Our analysis shows that significant errors may result from assuming an infinite initial distance between the shock and the observer. We argue that the shock travel time should be a parameter of a realistic superdiffusive transport model.

  1. Modeling of advection-diffusion-reaction processes using transport dissipative particle dynamics

    NASA Astrophysics Data System (ADS)

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-11-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. In particular, the transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of Lagrangian particles. To validate the proposed tDPD model and the boundary conditions, three benchmark simulations of one-dimensional diffusion with different boundary conditions are performed, and the results show excellent agreement with the theoretical solutions. Also, two-dimensional simulations of ADR systems are performed and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, an application of tDPD to the spatio-temporal dynamics of blood coagulation involving twenty-five reacting species is performed to demonstrate the promising biological applications of the tDPD model. Supported by the DOE Center on Mathematics for Mesoscopic Modeling of Materials (CM4) and an INCITE grant.

  2. Simulation of the advective methane transport and AOM in Shenhu area, the Northern South China Sea

    NASA Astrophysics Data System (ADS)

    Liu, L.; Wu, N.

    2012-04-01

    Anaerobic Oxidation of Methane (AOM) occurs in the transition zone between the presence of sulfate and methane. This reaction is an important process for methane and the global carbon cycle. Methane gas hydrates bearing sediments were recovered in Shenhu Area, the Northern South China Sea, and methane advective transport was detected in this area as well. A one dimension numerical simulation tool was implemented to study the AOM process combined with the advective methane transport in Shenhu Area according to the local drilling data and geochemical information. The modeled results suggest that local methane flux will be consumed in the sediment column via dissolution, sorption and AOM reaction. A portion of methane will enter water column and possibly atmosphere if the methane flux was one order of magnitude higher than current level. Furthermore, the calculated rates of AOM in Shenhu area range similar to that of gas hydrate mounds in Mexico Golf. However, AOM is ability to consume more methane than that in Golf of Mexico due to the lower permeable sediment associated with a deeper sulfate methane transition layer.

  3. A mass-conserving advection scheme for offline simulation of scalar transport in coastal ocean models

    NASA Astrophysics Data System (ADS)

    Gillibrand, P. A.; Herzfeld, M.

    2016-05-01

    We present a flux-form semi-Lagrangian (FFSL) advection scheme designed for offline scalar transport simulation with coastal ocean models using curvilinear horizontal coordinates. The scheme conserves mass, overcoming problems of mass conservation typically experienced with offline transport models, and permits long time steps (relative to the Courant number) to be used by the offline model. These attributes make the method attractive for offline simulation of tracers in biogeochemical or sediment transport models using archived flow fields from hydrodynamic models. We describe the FFSL scheme, and test it on two idealised domains and one real domain, the Great Barrier Reef in Australia. For comparison, we also include simulations using a traditional semi-Lagrangian advection scheme for the offline simulations. We compare tracer distributions predicted by the offline FFSL transport scheme with those predicted by the original hydrodynamic model, assess the conservation of mass in all cases and contrast the computational efficiency of the schemes. We find that the FFSL scheme produced very good agreement with the distributions of tracer predicted by the hydrodynamic model, and conserved mass with an error of a fraction of one percent. In terms of computational speed, the FFSL scheme was comparable with the semi-Lagrangian method and an order of magnitude faster than the full hydrodynamic model, even when the latter ran in parallel on multiple cores. The FFSL scheme presented here therefore offers a viable mass-conserving and computationally-efficient alternative to traditional semi-Lagrangian schemes for offline scalar transport simulation in coastal models.

  4. Exact PDF equations and closure approximations for advective-reactive transport

    SciTech Connect

    Venturi, D.; Tartakovsky, Daniel M.; Tartakovsky, Alexandre M.; Karniadakis, George E.

    2013-06-01

    Mathematical models of advection–reaction phenomena rely on advective flow velocity and (bio) chemical reaction rates that are notoriously random. By using functional integral methods, we derive exact evolution equations for the probability density function (PDF) of the state variables of the advection–reaction system in the presence of random transport velocity and random reaction rates with rather arbitrary distributions. These PDF equations are solved analytically for transport with deterministic flow velocity and a linear reaction rate represented mathematically by a heterog eneous and strongly-correlated random field. Our analytical solution is then used to investigate the accuracy and robustness of the recently proposed large-eddy diffusivity (LED) closure approximation [1]. We find that the solution to the LED-based PDF equation, which is exact for uncorrelated reaction rates, is accurate even in the presence of strong correlations and it provides an upper bound of predictive uncertainty.

  5. Renormalization group estimates of transport coefficients in the advection of a passive scalar by incompressible turbulence

    NASA Technical Reports Server (NTRS)

    Zhou, YE; Vahala, George

    1993-01-01

    The advection of a passive scalar by incompressible turbulence is considered using recursive renormalization group procedures in the differential sub grid shell thickness limit. It is shown explicitly that the higher order nonlinearities induced by the recursive renormalization group procedure preserve Galilean invariance. Differential equations, valid for the entire resolvable wave number k range, are determined for the eddy viscosity and eddy diffusivity coefficients, and it is shown that higher order nonlinearities do not contribute as k goes to 0, but have an essential role as k goes to k(sub c) the cutoff wave number separating the resolvable scales from the sub grid scales. The recursive renormalization transport coefficients and the associated eddy Prandtl number are in good agreement with the k-dependent transport coefficients derived from closure theories and experiments.

  6. Space shuttle exhaust plumes in the lower thermosphere: Advective transport and diffusive spreading

    NASA Astrophysics Data System (ADS)

    Stevens, Michael H.; Lossow, Stefan; Siskind, David E.; Meier, R. R.; Randall, Cora E.; Russell, James M.; Urban, Jo; Murtagh, Donal

    2014-02-01

    The space shuttle main engine plume deposited between 100 and 115 km altitude is a valuable tracer for global-scale dynamical processes. Several studies have shown that this plume can reach the Arctic or Antarctic to form bursts of polar mesospheric clouds (PMCs) within a few days. The rapid transport of the shuttle plume is currently not reproduced by general circulation models and is not well understood. To help delineate the issues, we present the complete satellite datasets of shuttle plume observations by the Sounding of the Atmosphere using Broadband Emission Radiometry instrument and the Sub-Millimeter Radiometer instrument. From 2002 to 2011 these two instruments observed 27 shuttle plumes in over 600 limb scans of water vapor emission, from which we derive both advective meridional transport and diffusive spreading. Each plume is deposited at virtually the same place off the United States east coast so our results are relevant to northern mid-latitudes. We find that the advective transport for the first 6-18 h following deposition depends on the local time (LT) of launch: shuttle plumes deposited later in the day (~13-22 LT) typically move south whereas they otherwise typically move north. For these younger plumes rapid transport is most favorable for launches at 6 and 18 LT, when the displacement is 10° in latitude corresponding to an average wind speed of 30 m/s. For plumes between 18 and 30 h old some show average sustained meridional speeds of 30 m/s. For plumes between 30 and 54 h old the observations suggest a seasonal dependence to the meridional transport, peaking near the beginning of year at 24 m/s. The diffusive spreading of the plume superimposed on the transport is on average 23 m/s in 24 h. The plume observations show large variations in both meridional transport and diffusive spreading so that accurate modeling requires knowledge of the winds specific to each case. The combination of transport and spreading from the STS-118 plume in August

  7. Diffusion related isotopic fractionation effects with one-dimensional advective-dispersive transport.

    PubMed

    Xu, Bruce S; Lollar, Barbara Sherwood; Passeport, Elodie; Sleep, Brent E

    2016-04-15

    Aqueous phase diffusion-related isotope fractionation (DRIF) for carbon isotopes was investigated for common groundwater contaminants in systems in which transport could be considered to be one-dimensional. This paper focuses not only on theoretically observable DRIF effects in these systems but introduces the important concept of constraining "observable" DRIF based on constraints imposed by the scale of measurements in the field, and on standard limits of detection and analytical uncertainty. Specifically, constraints for the detection of DRIF were determined in terms of the diffusive fractionation factor, the initial concentration of contaminants (C0), the method detection limit (MDL) for isotopic analysis, the transport time, and the ratio of the longitudinal mechanical dispersion coefficient to effective molecular diffusion coefficient (Dmech/Deff). The results allow a determination of field conditions under which DRIF may be an important factor in the use of stable carbon isotope measurements for evaluation of contaminant transport and transformation for one-dimensional advective-dispersive transport. This study demonstrates that for diffusion-dominated transport of BTEX, MTBE, and chlorinated ethenes, DRIF effects are only detectable for the smaller molar mass compounds such as vinyl chloride for C0/MDL ratios of 50 or higher. Much larger C0/MDL ratios, corresponding to higher source concentrations or lower detection limits, are necessary for DRIF to be detectable for the higher molar mass compounds. The distance over which DRIF is observable for VC is small (less than 1m) for a relatively young diffusive plume (<100years), and DRIF will not easily be detected by using the conventional sampling approach with "typical" well spacing (at least several meters). With contaminant transport by advection, mechanical dispersion, and molecular diffusion this study suggests that in field sites where Dmech/Deff is larger than 10, DRIF effects will likely not be

  8. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems.

    PubMed

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-07-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the conventional DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers. PMID:26156459

  9. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems

    NASA Astrophysics Data System (ADS)

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-07-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the conventional DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers.

  10. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems

    PubMed Central

    Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-01-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the conventional DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers. PMID:26156459

  11. Transport and Recruitment of Blue Crab Larvae:a Model with Advection and Mortality

    NASA Astrophysics Data System (ADS)

    Garvine, R. W.; Epifanio, C. E.; Epifanio, C. C.; Wong, K.-C.

    1997-07-01

    The present paper develops a mathematical model for the transport and recruitment of blue crab (Callinectes sapidus) larvae, and applies it to the inner continental shelf of the Middle Atlantic Bight near Delaware Bay, U.S.A. Blue crab larvae develop through seven or eight planktonic zoeal stages to a megalopa stage suitable for recruitment to adult populations of east coast estuaries. The larvae are concentrated near the surface, and the currents are primarily forced by alongshelf winds and river discharge through major estuaries. Model currents are prescribed based on a realistic synthesis of their observed relationship to wind and river discharge. Besides the resulting advection, particle diffusion and biological mortality are added to determine the fate of larvae released from their parent estuary. Groups of particles were released across the source region of the outflowing buoyancy-driven current in the model estuary mouth. Most larvae were swept alongshelf to the south with the buoyancy-driven coastal current, and thus were lost as recruits to the population of their parent estuary. However, some larvae released close to the seaward edge of the emerging coastal current were able to cross the coastal current front and move seaward into inner shelf water during upwelling-favorable (northward) wind events. Some of these, in turn, were suitably placed near the parent estuary mouth so that they could be advected landward as megalopae into the estuary during a subsequent downwelling-favorable (southward) wind event and thus join the adult population. The model results for megalopae returns were computed from consecutive daily release of 1000 particles, and were compared with 4 years of blue crab megalopa settlement data for Delaware Bay. The model results for 1989 and 1990 matched the observed data remarkably well, with both years showing dominance by a single return event of a few days duration. For 1991 and 1992, the observed results showed multiple return events

  12. Exploring a semimechanistic episodic Langevin model for bed load transport: Emergence of normal and anomalous advection and diffusion regimes

    NASA Astrophysics Data System (ADS)

    Fan, Niannian; Singh, Arvind; Guala, Michele; Foufoula-Georgiou, Efi; Wu, Baosheng

    2016-04-01

    Bed load transport is a highly stochastic, multiscale process, where particle advection and diffusion regimes are governed by the dynamics of each sediment grain during its motion and resting states. Having a quantitative understanding of the macroscale behavior emerging from the microscale interactions is important for proper model selection in the absence of individual grain-scale observations. Here we develop a semimechanistic sediment transport model based on individual particle dynamics, which incorporates the episodic movement (steps separated by rests) of sediment particles and study their macroscale behavior. By incorporating different types of probability distribution functions (PDFs) of particle resting times Tr, under the assumption of thin-tailed PDF of particle velocities, we study the emergent behavior of particle advection and diffusion regimes across a wide range of spatial and temporal scales. For exponential PDFs of resting times Tr, we observe normal advection and diffusion at long time scales. For a power-law PDF of resting times (i.e., f>(Tr>)˜Tr-ν), the tail thickness parameter ν is observed to affect the advection regimes (both sub and normal advective), and the diffusion regimes (both subdiffusive and superdiffusive). By comparing our semimechanistic model with two random walk models in the literature, we further suggest that in order to reproduce accurately the emerging diffusive regimes, the resting time model has to be coupled with a particle motion model able to produce finite particle velocities during steps, as the episodic model discussed here.

  13. TESTING THE FRACTIONAL ADVECTIVE-DISPERSIVE EQUATION FOR SOLUTE TRANSPORT IN SOIL WITH DATA FROM MISCIBLE DISPLACEMENT EXPERIMENTS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding and modeling transport of solutes in porous media is a critical issue in the environmental protection. Contaminants from various industrial and agricultural sources can travel in soil and ground water and eventually affect human and animal health. The parabolic advective-dispersive equ...

  14. The advective-dispersive equation with spatial fractional derivatives as a model for tracer transport in structured soil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The classical model to describe solute transport in soil is based on the advective-dispersive equation where Fick’s law is used to explain dispersion. From the microscopic point of view this is equivalent to consider that the motion of the particles of solute may be simulated by the Brownian motion....

  15. The predictability of advection-dominated flux-transport solar dynamo models

    SciTech Connect

    Sanchez, Sabrina; Fournier, Alexandre; Aubert, Julien

    2014-01-20

    Space weather is a matter of practical importance in our modern society. Predictions of forecoming solar cycles mean amplitude and duration are currently being made based on flux-transport numerical models of the solar dynamo. Interested in the forecast horizon of such studies, we quantify the predictability window of a representative, advection-dominated, flux-transport dynamo model by investigating its sensitivity to initial conditions and control parameters through a perturbation analysis. We measure the rate associated with the exponential growth of an initial perturbation of the model trajectory, which yields a characteristic timescale known as the e-folding time τ {sub e}. The e-folding time is shown to decrease with the strength of the α-effect, and to increase with the magnitude of the imposed meridional circulation. Comparing the e-folding time with the solar cycle periodicity, we obtain an average estimate for τ {sub e} equal to 2.76 solar cycle durations. From a practical point of view, the perturbations analyzed in this work can be interpreted as uncertainties affecting either the observations or the physical model itself. After reviewing these, we discuss their implications for solar cycle prediction.

  16. Transport dissipative particle dynamics model for mesoscopic advection- diffusion-reaction problems

    SciTech Connect

    Zhen, Li; Yazdani, Alireza; Tartakovsky, Alexandre M.; Karniadakis, George E.

    2015-07-07

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic DPD framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between particles, and an analytical formula is proposed to relate the mesoscopic concentration friction to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers.

  17. Numerical simulation of advective-dispersive multisolute transport with sorption, ion exchange and equilibrium chemistry

    USGS Publications Warehouse

    Lewis, F.M.; Voss, C.I.; Rubin, Jacob

    1986-01-01

    A model was developed that can simulate the effect of certain chemical and sorption reactions simultaneously among solutes involved in advective-dispersive transport through porous media. The model is based on a methodology that utilizes physical-chemical relationships in the development of the basic solute mass-balance equations; however, the form of these equations allows their solution to be obtained by methods that do not depend on the chemical processes. The chemical environment is governed by the condition of local chemical equilibrium, and may be defined either by the linear sorption of a single species and two soluble complexation reactions which also involve that species, or binary ion exchange and one complexation reaction involving a common ion. Partial differential equations that describe solute mass balance entirely in the liquid phase are developed for each tenad (a chemical entity whose total mass is independent of the reaction process) in terms of their total dissolved concentration. These equations are solved numerically in two dimensions through the modification of an existing groundwater flow/transport computer code. (Author 's abstract)

  18. Relative effects of advection, sorption and diffusion on transport and tailing of chlorinated solvents

    NASA Astrophysics Data System (ADS)

    Maghrebi, M.; Jankovic, I.; Rabideau, A. J.; Allen-King, R. M.; Weissmann, G. S.

    2011-12-01

    Effects of three key transport mechanisms (advection, diffusion and sorption) on transport and contaminant tailing of chlorinated solvents have been investigated using a numerical model. Thousands of model simulations have been conducted for various combinations of transport parameters that govern three key mechanisms in order to quantify tailing and relative importance of each mechanism. Hydraulic conductivity model contains a single inclusion of constant conductivity K embedded in a homogeneous anisotropic background of conductivity Kh,Kv. The inclusion is shaped as an oblate ellipsoid and subject to uniform flow. The background represents "average" conductivity of a heterogeneous formation while inclusion is used to represent geologic units that are more or less conductive than the background. The ratio of long to short semi-axis of the inclusion (a/b) models the ratio of horizontal to vertical integral scales (Ih/Iv) of different geologic units, where integral scales can be obtained, for example, using indicator variograms. The flow solution for present problem is obtained analytically as a closed form solution with exact expressions for Darcy velocity valid both inside and outside the inclusion. Sorption is modeled as an equilibrium process governed by a linear isotherm. The effects on transport and tailing are accounted for using retardation factors. Sorption heterogeneity is created by allowing different values of retardation factor for the interior (Ri) and the exterior of the inclusion (Rb). Diffusive displacements have been added to retarded advective displacements using random walk method. Peclet number, defined as Pe=U Ih/D (U is the groundwater velocity, D is the molecular diffusion coefficient for chlorinated solvents), is used to quantify the diffusion process. Very large numbers of particles (hundreds of thousands) have been tracked using very small time steps (as small as a/10,000) to provide sufficient resolution to breakthrough curves and to

  19. Experimental study of advective-diffusive gaseous CO2 transport through porous media

    NASA Astrophysics Data System (ADS)

    Basirat, Farzad; Sharma, Prabhakar; Niemi, Auli; Fagerlund, Fritjof

    2014-05-01

    Leakage of gaseous CO2 into the shallow subsurface system is one of the main concerns associated with geologic storage resources. A better understanding of CO2 leakage in the shallow subsurface plays an important role for developing leakage monitoring programs. CO2 may reach the unsaturated zone by different leak mechanisms such as exsolution from CO2 supersaturated water and continuous bubbling or gas flow along a leakage path. In the unsaturated zone, the CO2 is heavier than air and may accumulate below the ground surface and move laterally. We developed a small-scale experiment setup to study the possible gaseous CO2 transport mechanisms with different controlled conditions. In this study, the experiment setup was applied to measure CO2 distributions in time and space through homogenous dry sand in which the CO2 concentrations through the domain were measured by sensitive gas sensors. The preliminary analysis of the result suggests that the transport and distribution of gaseous CO2 is spatially and temporally sensitive for the selected experimental conditions of gas flow rate and porous media. To better understand the advection and diffusion processes through the unsaturated zone, the experimental results are coupled with the dusty gas model (DGM) of Mason et al. (1967). The dusty gas model's constitutive relationships are integrated into a numerical model for multicomponent gas mixture flow and transport in porous media. The DGM considers interactions between all gaseous species and Knudsen diffusion which is important in fine grained soils. Results from the applied model were consistent with the experimental breakthrough curves obtained in this study.

  20. Characterization of the role of heterogeneous advection and diffusion on transport in weathered and fractured granite

    NASA Astrophysics Data System (ADS)

    Guihéneuf, N.; Boisson, A.; Bour, O.; Le Borgne, T.; Marechal, J.; Nigon, B.; Wajiddudin, M.; Ahmed, S.

    2013-12-01

    The prediction of transport in weathered and fractured rocks is critical as it represents the primary control of contaminant transfer from the subsurface in many parts of the world. This is the case in Southern India, where the subsurface is composed mainly of weathered and fractured granite and where the overexploitation of the groundwater resource since the 70's has led to high water table depletion and strong groundwater quality deterioration. One key issue for modelling transport in such systems is to quantify the respective role of advective heterogeneities and matrix diffusion, which can both lead to strongly non Fickian transport properties. We investigate this question by analysing tracer test experiments performed under different flow configurations at a fractured granite experimental site located in Andhra Pradesh (India). We performed both convergent and push-pull tracer tests within the same fracture and at different scales. Three convergent tracer tests were performed with a solution of fluorescein for different pumping rate and for different distances between injection and pumping boreholes: 6, 30 and 41 meters. To evaluate diffusive process, we performed two long-duration push-pull tests (push time of 3 hours) with a solution of two conservative tracers of different diffusion coefficient (fluorescein and sodium chloride). We performed also six others push-pull tests with only fluorescein but for a variable push times of 14 min and 55 min with or without resting time of about 60 min. The late-time behaviour on the breakthrough curves (BTCs) obtained for all convergent tracer tests showed a power-law slope of -2. Two of them showed an inflexion in the BTCs suggesting the existence of two independent flow paths and thus a highly channelized flow. The long-duration push-pull tests showed similar late-time behaviour with a power-law slope of -2.2 for both tracers. The six others push-pull tests showed a variation of power-law exponent from -3 to -2

  1. Modelling transport in media with heterogeneous advection properties and mass transfer with a Continuous Time Random Walk approach

    NASA Astrophysics Data System (ADS)

    Comolli, Alessandro; Moussey, Charlie; Dentz, Marco

    2016-04-01

    Transport processes in groundwater systems are strongly affected by the presence of heterogeneity. The heterogeneity leads to non-Fickian features, that manifest themselves in the heavy-tailed breakthrough curves, as well as in the non-linear growth of the mean squared displacement and in the non-Gaussian plumes of solute particles. The causes of non-Fickian transport can be the heterogeneity in the flow fields and the processes of mass exchange between mobile and immobile phases, such as sorption/desorption reactions and diffusive mass transfer. Here, we present a Continuous Time Random Walk (CTRW) model that describes the transport of solutes in d-dimensional systems by taking into account both heterogeneous advection and mobile-immobile mass transfer. In order to account for these processes in the CTRW, the heterogeneities are mapped onto a distribution of transition times, which can be decomposed into advective transition times and trapping times, the latter being treated as a compound Poisson process. While advective transition times are related to the Eulerian flow velocities and, thus, to the conductivity distribution, trapping times depend on the sorption/desorption time scale, in case of reactive problems, or on the distribution of diffusion times in the immobile zones. Since the trapping time scale is typically much larger than the advective time scale, we observe the existence of two temporal regimes. The pre-asymptotic regime is defined by a characteristic time scale at which the properties of transport are fully determined by the heterogeneity of the advective field. On the other hand, in the asymptotic regime both the heterogeneity and the mass exchange processes play a role in conditioning the behaviour of transport. We consider different scenarios to discuss the relative importance of the advective heterogeneity and the mass transfer for the occurrence of non-Fickian transport. For each case we calculate analytically the scalings of the breakthrough

  2. Advective transport observations with MODPATH-OBS--documentation of the MODPATH observation process

    USGS Publications Warehouse

    Hanson, R.T.; Kauffman, L.K.; Hill, M.C.; Dickinson, J.E.; Mehl, S.W.

    2013-01-01

    The MODPATH-OBS computer program described in this report is designed to calculate simulated equivalents for observations related to advective groundwater transport that can be represented in a quantitative way by using simulated particle-tracking data. The simulated equivalents supported by MODPATH-OBS are (1) distance from a source location at a defined time, or proximity to an observed location; (2) time of travel from an initial location to defined locations, areas, or volumes of the simulated system; (3) concentrations used to simulate groundwater age; and (4) percentages of water derived from contributing source areas. Although particle tracking only simulates the advective component of conservative transport, effects of non-conservative processes such as retardation can be approximated through manipulation of the effective-porosity value used to calculate velocity based on the properties of selected conservative tracers. This program can also account for simple decay or production, but it cannot account for diffusion. Dispersion can be represented through direct simulation of subsurface heterogeneity and the use of many particles. MODPATH-OBS acts as a postprocessor to MODPATH, so that the sequence of model runs generally required is MODFLOW, MODPATH, and MODPATH-OBS. The version of MODFLOW and MODPATH that support the version of MODPATH-OBS presented in this report are MODFLOW-2005 or MODFLOW-LGR, and MODPATH-LGR. MODFLOW-LGR is derived from MODFLOW-2005, MODPATH 5, and MODPATH 6 and supports local grid refinement. MODPATH-LGR is derived from MODPATH 5. It supports the forward and backward tracking of particles through locally refined grids and provides the output needed for MODPATH_OBS. For a single grid and no observations, MODPATH-LGR results are equivalent to MODPATH 5. MODPATH-LGR and MODPATH-OBS simulations can use nearly all of the capabilities of MODFLOW-2005 and MODFLOW-LGR; for example, simulations may be steady-state, transient, or a combination

  3. Fast algorithms for transport models

    SciTech Connect

    Manteuffel, T.A.

    1992-12-01

    The objective of this project is the development of numerical solution techniques for deterministic models of the transport of neutral and charged particles and the demonstration of their effectiveness in both a production environment and on advanced architecture computers. The primary focus is on various versions of the linear Boltzman equation. These equations are fundamental in many important applications. This project is an attempt to integrate the development of numerical algorithms with the process of developing production software. A major thrust of this reject will be the implementation of these algorithms on advanced architecture machines that reside at the Advanced Computing Laboratory (ACL) at Los Alamos National Laboratories (LANL).

  4. Aspects of numerical and representational methods related to the finite-difference simulation of advective and dispersive transport of freshwater in a thin brackish aquifer

    USGS Publications Warehouse

    Merritt, M.L.

    1993-01-01

    The simulation of the transport of injected freshwater in a thin brackish aquifer, overlain and underlain by confining layers containing more saline water, is shown to be influenced by the choice of the finite-difference approximation method, the algorithm for representing vertical advective and dispersive fluxes, and the values assigned to parametric coefficients that specify the degree of vertical dispersion and molecular diffusion that occurs. Computed potable water recovery efficiencies will differ depending upon the choice of algorithm and approximation method, as will dispersion coefficients estimated based on the calibration of simulations to match measured data. A comparison of centered and backward finite-difference approximation methods shows that substantially different transition zones between injected and native waters are depicted by the different methods, and computed recovery efficiencies vary greatly. Standard and experimental algorithms and a variety of values for molecular diffusivity, transverse dispersivity, and vertical scaling factor were compared in simulations of freshwater storage in a thin brackish aquifer. Computed recovery efficiencies vary considerably, and appreciable differences are observed in the distribution of injected freshwater in the various cases tested. The results demonstrate both a qualitatively different description of transport using the experimental algorithms and the interrelated influences of molecular diffusion and transverse dispersion on simulated recovery efficiency. When simulating natural aquifer flow in cross-section, flushing of the aquifer occurred for all tested coefficient choices using both standard and experimental algorithms. ?? 1993.

  5. Rigorous upper bounds for transport due to passive advection by inhomogeneous turbulence

    SciTech Connect

    Krommes, J.A.; Smith, R.A.

    1987-05-01

    A variational procedure, due originally to Howard and explored by Busse and others for self-consistent turbulence problems, is employed to determine rigorous upper bounds for the advection of a passive scalar through an inhomogeneous turbulent slab with arbitrary generalized Reynolds number R and Kubo number K. In the basic version of the method, the steady-state energy balance is used as a constraint; the resulting bound, though rigorous, is independent of K. A pedagogical reference model (one dimension, K = infinity) is described in detail; the bound compares favorably with the exact solution. The direct-interaction approximation is also worked out for this model; it is somewhat more accurate than the bound, but requires considerably more labor to solve. For the basic bound, a general formalism is presented for several dimensions, finite correlation length, and reasonably general boundary conditions. Part of the general method, in which a Green's function technique is employed, applies to self-consistent as well as to passive problems, and thereby generalizes previous results in the fluid literature. The formalism is extended for the first time to include time-dependent constraints, and a bound is deduced which explicitly depends on K and has the correct physical scalings in all regimes of R and K. Two applications from the theory of turbulent plasmas ae described: flux in velocity space, and test particle transport in stochastic magnetic fields. For the velocity space problem the simplest bound reproduces Dupree's original scaling for the strong turbulence diffusion coefficient. For the case of stochastic magnetic fields, the scaling of the bounds is described for the magnetic diffusion coefficient as well as for the particle diffusion coefficient in the so-called collisionless, fluid, and double-streaming regimes.

  6. Comparison of estimated surface energy fluxes using METRIC and two-source algorithms for Advective Conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Surface energy fluxes have long been recognized as playing an important role in determining exchanges of energy and mass between the hydrosphere, atmosphere, and biosphere. In this study, we applied the METRIC (Mapping ET at high Resolutions with Internal Calibration) algorithm to derive daily surfa...

  7. A study of turbulent transport of an advective nature in a fluid plasma

    NASA Astrophysics Data System (ADS)

    Min, Byunghoon; An, Chan-Yong; Kim, Chang-Bae

    2014-08-01

    The advective nature of the electrostatic turbulent flux of plasma energy in Fourier space is studied numerically in a nearly adiabatic state. Such a state is represented by the Hasegawa-Mima equation, which is driven by a noise that may model the destabilization due to the phase mismatch of the plasma density and the electric potential. The noise is assumed to be Gaussian and not to be invariant under reflection along a direction ŝ. The flux density induced by such noise is found to be anisotropic: While it is random along ŝ, it is not along the perpendicular direction ŝ ⊥, and the flux is not diffusive. The renormalized response may be approximated as advective, with the velocity being proportional to ( kρ s )2, in the Fourier space.

  8. An efficient horizontal advection scheme for the modeling of global transport of constituents

    SciTech Connect

    Hundsdorfer, W.; Spee, E.J.

    1995-12-01

    In this paper the authors consider a dimensional-splitting scheme for horizontal advection on a sphere with a uniform longitude-latitude grid. The 1D subprocesses that arise within the splitting are solved with an explicit finite-volume type scheme, which is made unconditionally stable by allowing the stencil to vary with the Courant numbers. The scheme is made positive by flux limiting. For the inaccuracies at the poles some special measures are discussed. Numerical tests show that the scheme is almost shape preserving and conservative, and it gives accurate results at low computational costs. 23 refs., 7 figs., 1 tab.

  9. Temporal signatures of advective versus diffusive radon transport at a geothermal zone in Central Nepal.

    PubMed

    Richon, Patrick; Perrier, Frédéric; Koirala, Bharat Prasad; Girault, Frédéric; Bhattarai, Mukunda; Sapkota, Soma Nath

    2011-02-01

    Temporal variation of radon-222 concentration was studied at the Syabru-Bensi hot springs, located on the Main Central Thrust zone in Central Nepal. This site is characterized by several carbon dioxide discharges having maximum fluxes larger than 10 kg m(-2) d(-1). Radon concentration was monitored with autonomous Barasol™ probes between January 2008 and November 2009 in two small natural cavities with high CO(2) concentration and at six locations in the soil: four points having a high flux, and two background reference points. At the reference points, dominated by radon diffusion, radon concentration was stable from January to May, with mean values of 22 ± 6.9 and 37 ± 5.5 kBq m(-3), but was affected by a large increase, of about a factor of 2 and 1.6, respectively, during the monsoon season from June to September. At the points dominated by CO(2) advection, by contrast, radon concentration showed higher mean values 39.0 ± 2.6 to 78 ± 1.4 kBq m(-3), remarkably stable throughout the year with small long-term variation, including a possible modulation of period around 6 months. A significant difference between the diffusion dominated reference points and the advection-dominated points also emerged when studying the diurnal S(1) and semi-diurnal S(2) periodic components. At the advection-dominated points, radon concentration did not exhibit S(1) or S(2) components. At the reference points, however, the S(2) component, associated with barometric tide, could be identified during the dry season, but only when the probe was installed at shallow depth. The S(1) component, associated with thermal and possibly barometric diurnal forcing, was systematically observed, especially during monsoon season. The remarkable short-term and long-term temporal stability of the radon concentration at the advection-dominated points, which suggests a strong pressure source at depth, may be an important asset to detect possible temporal variations associated with the

  10. A complementary gravitational N-body simulation algorithm for investigation of chaotic advection in astrophysical and cosmological systems

    NASA Astrophysics Data System (ADS)

    Rosa, Reinaldo

    The gravitational N-body simulations have become a powerful tool for testing the theories of structure formation in astrophysical and cosmological systems. In particular, it has been shown that the statistical characterization of dark matter distribution is an important ingredient in the investigation of large-scale structure formation in the Hubble volume simulated from the GADGET-VC algorithm. Recently, an established statistical method was used to demonstrate the importance of considering chaotic advection (or Lagrange Turbulence) [1] in combination with gravitational instabilities in the Λ-CDM simulations performed from the Virgo Consortium (VC) [2]. Working as a complementary tool of the GADGET-VC algorithm, the LAC-INPE and the IC-UFF develop the COsmic LAgrangian TUrbulence Simulator (COLATUS) to perform gravitational N-body simulations allowing the computation of the velocity directional angle of a single particle at every time-step and then the evaluation of its energy power spectrum. To achieve its objective COLATUS compute the gravitational forces by using a direct summation scheme. COLATUS is implemented in a Compute Unified Device Architecture (CUDA) by using the Nvidia graphics processing units (GPUs) to reduce the simulation runtime. We use the simulator for testing a hypothesis of an alternative cosmological scenario where the dark matter is interpreted as spatio-temporal deformations due to an alternative coupled expanding universe [3]. These deformations are included as the action of relativistic potentials. In the present work we show the preliminary simulations including up to 10(6) particles using 1536 cores of NVIDIA GTX680. The respective energy power spectra are shown for several deformation potentials which are discussed into the alternative inhomogeneous cosmological context. [1] Caretta, C.A. et al. Evidence of turbulence-like universality in the formation of galaxy-sized dark matter haloes. Astron. Astrophys 487 (2008) 445-451. [2] Rosa

  11. Advective excess Ba transport as shown from sediment and trap geochemical signatures

    SciTech Connect

    Fagel, N.; Andre, L.; Dehairs, F.

    1999-08-01

    The authors report the results of a geochemical study of sediment and trap material. Major and trace elements (Zr, Ba, rare earth elements, and Th) were analyzed on bulk sedimentary material collected along the NE Atlantic margin. The aim is to test the widespread use of Ba-barite as a proxy for paleoproductivity in a continental margin area. This environment is of great interest because atmospheric-oceanic exchanges are important. In sediments, the geochemical signatures remain close to an upper crust reference, with flat shale-normalized rare earth elements patterns and constant elementary ratios. The calculated biogenic fraction of Ba or excess Ba (20--45%) remains lower than the excess Ba record in trap material (80--99%). The evolution of the geochemical signature along the margin reflects variable dilution of a detrital Post Archean Australian Shale-like component by a biogenic carbonaceous seawater-derived component. The trap material displays a wide range of variation in its trace element content (e.g., Ba {approximately}150--3,000 ppm, Zr {approximately}2--100 ppm), except for the abyssal site, which is characterized by constant signature. In the two other sites, all of the trace element contents increase with water depth and present pronounced seasonal changes at each sampled water depth. The amount of excess Ba also increases in the deepest traps, and its evolution throughout the year mimics the change of the other analyzed trace elements. In contrast, its relationships with particulate organic carbon are not obvious. In terms of fluxes, two periods of enhanced excess Ba fluxes are observed: (1) excess Ba flux increases with the detrital-like elements like Th especially during winter, and (2) excess Ba flux is enhanced without any change for the other trace elements during spring. To explain the first case, a supply through lateral advection is proposed. Such transient input of significant excess Ba flux will have a great impact on the yearly averaged

  12. Antidiffusive velocities for multipass donor cell advection

    SciTech Connect

    Margolin, L.; Smolarkiewicz, P.K.

    1999-01-01

    Multidimensional positive definite advection transport algorithm (MPDATA) is an iterative process for approximating the advection equation, which uses a donor cell approximation to compensate for the truncation error of the originally specified donor cell scheme. This step may be repeated an arbitrary number of times, leading to successfully more accurate solutions to the advection equation. In this paper, the authors show how to sum the successive approximations analytically to find a single antidiffusive velocity that represents the effects of an arbitrary number of passes. The analysis is first done in one dimension to illustrate the method and then is repeated in two dimensions. The existence of cross terms in the truncation analysis of the two-dimensional equations introduces an extra complication into the calculation. The authors discuss the implementation of the antidiffusive velocities and provide some examples of applications, including a third-order accurate scheme.

  13. LAYER DEPENDENT ADVECTION IN CMAQ

    EPA Science Inventory

    The advection methods used in CMAQ require that the Courant-Friedrichs-Lewy (CFL) condition be satisfied for numerical stability and accuracy. In CMAQ prior to version 4.3, the ADVSTEP algorithm established CFL-safe synchronization and advection timesteps that were uniform throu...

  14. From analytical solutions of solute transport equations to multidimensional time-domain random walk (TDRW) algorithms

    NASA Astrophysics Data System (ADS)

    Bodin, Jacques

    2015-03-01

    In this study, new multi-dimensional time-domain random walk (TDRW) algorithms are derived from approximate one-dimensional (1-D), two-dimensional (2-D), and three-dimensional (3-D) analytical solutions of the advection-dispersion equation and from exact 1-D, 2-D, and 3-D analytical solutions of the pure-diffusion equation. These algorithms enable the calculation of both the time required for a particle to travel a specified distance in a homogeneous medium and the mass recovery at the observation point, which may be incomplete due to 2-D or 3-D transverse dispersion or diffusion. The method is extended to heterogeneous media, represented as a piecewise collection of homogeneous media. The particle motion is then decomposed along a series of intermediate checkpoints located on the medium interface boundaries. The accuracy of the multi-dimensional TDRW method is verified against (i) exact analytical solutions of solute transport in homogeneous media and (ii) finite-difference simulations in a synthetic 2-D heterogeneous medium of simple geometry. The results demonstrate that the method is ideally suited to purely diffusive transport and to advection-dispersion transport problems dominated by advection. Conversely, the method is not recommended for highly dispersive transport problems because the accuracy of the advection-dispersion TDRW algorithms degrades rapidly for a low Péclet number, consistent with the accuracy limit of the approximate analytical solutions. The proposed approach provides a unified methodology for deriving multi-dimensional time-domain particle equations and may be applicable to other mathematical transport models, provided that appropriate analytical solutions are available.

  15. Modeling Solute Transport in Soil Columns Using Advective-Dispersive Equation with Fractional Spatial Derivatives

    Technology Transfer Automated Retrieval System (TEKTRAN)

    It has been reported that this model cannot take into account several important features of solute movement through soil. Recently, a new model has been suggested that results in a solute transport equation with fractional spatial derivatives, or FADE. We have assembled a database on published solu...

  16. A massively parallel semi-Lagrangian algorithm for solving the transport equation

    SciTech Connect

    Manson, Russell; Wang, Dali

    2010-01-01

    The scalar transport equation underpins many models employed in science, engineering, technology and business. Application areas include, but are not restricted to, pollution transport, weather forecasting, video analysis and encoding (the optical flow equation), options and stock pricing (the Black-Scholes equation) and spatially explicit ecological models. Unfortunately finding numerical solutions to this equation which are fast and accurate is not trivial. Moreover, finding such numerical algorithms that can be implemented on high performance computer architectures efficiently is challenging. In this paper the authors describe a massively parallel algorithm for solving the advection portion of the transport equation. We present an approach here which is different to that used in most transport models and which we have tried and tested for various scenarios. The approach employs an intelligent domain decomposition based on the vector field of the system equations and thus automatically partitions the computational domain into algorithmically autonomous regions. The solution of a classic pure advection transport problem is shown to be conservative, monotonic and highly accurate at large time steps. Additionally we demonstrate that the algorithm is highly efficient for high performance computer architectures and thus offers a route towards massively parallel application.

  17. User's guide to PHREEQC, a computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations

    USGS Publications Warehouse

    Parkhurst, D.L.

    1995-01-01

    PHREEQC is a computer program written in the C pwgranuning language that is designed to perform a wide variety of aqueous geochemical calculations. PHREEQC is based on an ion-association aqueous model and has capabilities for (1) speciation and saturation-index calculations, (2) reaction-path and advective-transport calculations involving specified irreversible reactions, mixing of solutions, mineral and gas equilibria surface-complex-ation reactions, and ion-exchange reactions, and (3) inverse modeling, which finds sets of mineral and gas mole transfers that account for composition differences between waters, within specified compositional uncertainties. PHREEQC is derived from the Fortran program PHREEQE, but it has been completely rewritten in C with the addition many new capabilities. New features include the capabilities to use redox couples to distribute redox elements among their valence states in speciation calculations; to model ion-exchange and surface-compiexation reactions; to model reactions with a fixed-pressure, multicomponent gas phase (that is, a gas bubble); to calculate the mass of water in the aqueous phase during reaction and transport calculations; to keep track of the moles of minerals present in the solid phases and determine antomaticaHy the thermodynamically stable phase assemblage; to simulate advective transport in combination with PHREEQC's reaction-modeling capability; and to make inverse modeling calculations that allow for uncertainties in the analytical data. The user interface is improved through the use of a simplified approach to redox reactions, which includes explicit mole-balance equations for hydrogen and oxygen; the use of a revised input that is modular and completely free format; and the use of mineral names and standard chemical symbolism rather than index numbers. The use of (2 eliminates nearly all limitations on army sizes, including numbers of elements, aqueous species, solutions, phases, and lengths of character

  18. MT3DMS: A MODULAR THREE-DIMENSIONAL MULTISPECIES TRANSPORT MODEL FOR SIMULATION OF ADVECTION, DISPERSION, AND CHEMICAL REACTIONS OF CONTAMINANTS IN GROUNDWATER SYSTEMS: DOCUMENTATION AND USER'S GUIDE

    EPA Science Inventory

    This manual describes the next generation of the modular three-dimensional transport model, MT3D, with significantly expanded capabilities, including the addition of (a) a third-order total-variation-diminishing (TVD) scheme for solving the advection term that is mass conservativ...

  19. Improved rigorous upper bounds for transport due to passive advection described by simple models of bounded systems

    SciTech Connect

    Kim, Chang-Bae; Krommes, J.A.

    1988-08-01

    The work of Krommes and Smith on rigorous upper bounds for the turbulent transport of a passively advected scalar (/ital Ann. Phys./ 177:246 (1987)) is extended in two directions: (1) For their ''reference model,'' improved upper bounds are obtained by utilizing more sophisticated two-time constraints which include the effects of cross-correlations up to fourth order. Numerical solutions of the model stochastic differential equation are also obtained; they show that the new bounds compare quite favorably with the exact results, even at large Reynolds and Kubo numbers. (2) The theory is extended to take account of a finite spatial autocorrelation length L/sub c/. As a reasonably generic example, the problem of particle transport due to statistically specified stochastic magnetic fields in a collisionless turbulent plasma is revisited. A bound is obtained which reduces for small L/sub c/ to the quasilinear limit and for large L/sub c/ to the strong turbulence limit, and which provides a reasonable and rigorous interpolation for intermediate values of L/sub c/. 18 refs., 6 figs.

  20. ADVECTIVE TRANSPORT OF INTERSTELLAR PLASMA INTO THE HELIOSPHERE ACROSS THE RECONNECTING HELIOPAUSE

    SciTech Connect

    Strumik, M.; Grzedzielski, S.; Czechowski, A.; Macek, W. M.; Ratkiewicz, R.

    2014-02-10

    We discuss results of magnetohydrodynamical model simulations of plasma dynamics in the proximity of the heliopause (HP). The model is shown to fit details of the magnetic field variations observed by the Voyager 1 spacecraft during the transition from the heliosphere to the local interstellar medium (LISM). We propose an interpretation of magnetic field structures observed by Voyager 1 in terms of fine-scale physical processes. Our simulations reveal an effective transport mechanism of relatively dense LISM plasma across the reconnecting HP into the heliosphere. The mechanism is associated with annihilation of magnetic sectors in the heliospheric plasma near the HP.

  1. Advective heat transport associated to regional Earth degassing in central Apennine (Italy)

    NASA Astrophysics Data System (ADS)

    Cardellini, Carlo; Chiodini, Giovanni; Caliro, Stefano; Chiarabba, Claudio; Frondini, Francesco

    2013-04-01

    The main springs of central Italy Apennines were investigated, in order to compute the amount of heat transported by groundwaters and to compute the fraction of heat due to the geothermal heat flux. The 46 investigated springs represent a significant portion of the permeable structures of the Apennine being characterised by a cumulative flow rate of 130 m3/s, i.e. ~ 50% of the water discharged in this sector of the Apennines. The groundwaters are characterised by relatively low temperatures, but the occurrence of an heat anomaly is evident when the differences between the temperatures of springs and recharge waters are compared with the corresponding altitude difference. A total amount of heat of ~ 2.1 × 109 J/s has been estimated to be transported by these groundwaters. Most of this heat (57%) is given by geothermal warming while the remaining 43% is due to gravitational potential energy dissipation. The computed geothermal warming implies very high heat flux, with values higher than 300 mW/m2, in a large sector of the Apennines which was considered to date be characterised by normal to low conductive heat flux. The same area is affected by high fluxes of CO2 from a deep source and the strict correlation between the geothermal warming and the input of deep CO2-rich fluids is testified by the fact that all the thermally anomalous groundwaters are also affected by the input of deeply derived CO2 contrary to those not thermally anomalous which display any input of deeply derived CO2. This correspondence reasonably suggest the geothermal heat is transported from depth by CO2 rich fluids, which enter the aquifers and mix with infiltrating waters. The amount of geothermal heat transported by central Apennine cold groundwaters is in absolute very high. It results the double than the hydrothermal heat discharge of the US Cascade Range (~1×103 MW) and is about the half of the total heat discharged at Yellowstone, one of the largest hydrothermal system of the world (5-6

  2. The effects of temperature and motility on the advective transport of a deep subsurface bacteria through saturated sediment

    SciTech Connect

    McCaulou, D.R.

    1993-10-01

    Replicate column experiments were done to quantify the effects of temperature and bacterial motility on advective transport through repacked, but otherwise unaltered, natural aquifer sediment. The bacteria used in this study, A0500, was a flagellated, spore-forming rod isolated from the deep subsurface at DOE`s Savannah River Laboratory. Motility was controlled by turning on flagellar metabolism at 18{degrees}C but off at 40{degrees}C. Microspheres were used to independently quantify the effects of temperature on the sticking efficiency ({alpha}), estimated using a steady-state filtration model. The observed greater microsphere removal at the higher temperature agreed with the physical-chemical model, but bacteria removal at 18{degrees}C was only half that at 4{degrees}C. The sticking efficiency for non-motile A0500 (4{degrees}C) was over three times that of the motile A0500 (18{degrees}C), 0.073 versus 0.022 respectively. Analysis of complete breakthrough curves using a non-steady, kinetically limited, transport model to estimate the time scales of attachment and detachment suggested that motile A 0500 bacteria traveled twice as far as non-motile A 0500 bacteria before becoming attached. Once attached, non-motile colloids detached on the time scale of 9 to 17 days. The time scale for detachment of motile A0500 bacteria was shorter, 4 to 5 days. Results indicate that bacterial attachment was reversible and detachment was enhanced by bacterial motifity. The kinetic energy of bacterial motility changed the attachment-detachment kinetics in favor of the detached state. The chemical factors responsible for the enhanced transport are not known. However, motility may have caused weakly held bacteria to detach from the secondary minimum, and possibly from the primary minimum, as described by DLVO theory.

  3. Advective heat transport associated with regional Earth degassing in central Apennine (Italy)

    NASA Astrophysics Data System (ADS)

    Chiodini, G.; Cardellini, C.; Caliro, S.; Chiarabba, C.; Frondini, F.

    2013-07-01

    In this work we show that the main springs of the central Apennine transport a total amount of heat of ˜2.2×109 J s-1. Most of this heat (57%) is the result of geothermal warming while the remaining 43% is due to gravitational potential energy dissipation. This result indicates that a large area of the central Apennines is very hot with heat flux values >300 mW m-2. These values are higher than those measured in the magmatic and famously geothermal provinces of Tuscany and Latium and about 1/3 of the total heat discharged at Yellowstone. This finding is surprising because the central Apennines have been thought to be a relatively cold area. Translated by CO2 rich fluids, this heat anomaly suggests the existence of a thermal source such as a large magmatic intrusion at depth. Recent tomographic images of the area support the presence of such an intrusion visible as a broad negative velocity anomaly in seismic waves. Our results indicate that the thermal regime of tectonically active areas of the Earth, where meteoric waters infiltrate and deeply circulate, should be revised on the basis of mass and energy balances of the groundwater systems.

  4. An implicit dispersive transport algorithm for the US Geological Survey MOC3D solute-transport model

    USGS Publications Warehouse

    Kipp, K.L., Jr.; Konikow, L.F.; Hornberger, G.Z.

    1998-01-01

    This report documents an extension to the U.S. Geological Survey MOC3D transport model that incorporates an implicit-in-time difference approximation for the dispersive transport equation, including source/sink terms. The original MOC3D transport model (Version 1) uses the method of characteristics to solve the transport equation on the basis of the velocity field. The original MOC3D solution algorithm incorporates particle tracking to represent advective processes and an explicit finite-difference formulation to calculate dispersive fluxes. The new implicit procedure eliminates several stability criteria required for the previous explicit formulation. This allows much larger transport time increments to be used in dispersion-dominated problems. The decoupling of advective and dispersive transport in MOC3D, however, is unchanged. With the implicit extension, the MOC3D model is upgraded to Version 2. A description of the numerical method of the implicit dispersion calculation, the data-input requirements and output options, and the results of simulator testing and evaluation are presented. Version 2 of MOC3D was evaluated for the same set of problems used for verification of Version 1. These test results indicate that the implicit calculation of Version 2 matches the accuracy of Version 1, yet is more efficient than the explicit calculation for transport problems that are characterized by a grid Peclet number less than about 1.0.

  5. Analysis of steady-state flow and advective transport in the eastern Snake River Plain aquifer system, Idaho

    USGS Publications Warehouse

    Ackerman, D.J.

    1995-01-01

    Quantitative estimates of ground-water flow directions and traveltimes for advective flow were developed for the regional aquifer system of the eastern Snake River Plain, Idaho. The work included: (1) descriptions of compartments in the aquifer that function as intermediate and regional flow systems, (2) descriptions of pathlines for flow originating at or near the water table, and (3) quantitative estimates of traveltimes for advective transport originating at or near the water table. A particle-tracking postprocessing program was used to compute pathlines on the basis of output from an existing three-dimensional steady-state flow model. The flow model uses 1980 conditions to approximate average annual conditions for 1950-80. The advective transport model required additional information about the nature of flow across model boundaries, aquifer thickness, and porosity. Porosity of two types of basalt strata has been reported for more than 1,500 individual cores from test holes, wells, and outcrops near the south side of the Idaho National Engineering Laboratory. The central 80 percent of samples had porosities of 0.08 to 0.25, the central 50 percent of samples, O. 11 to 0.21. Calibration of the model involved choosing a value for porosity that yielded the best solution. Two radiologic contaminants, iodine-129 and tritium, both introduced to the flow system about 40 years ago, are relatively conservative tracers. Iodine- 129 was considered to be more useful because of a lower analytical detection limit, longer half-life, and longer flow path. The calibration value for porosity was 0.21. Most flow in the aquifer is contained within a regional-scale compartment and follows paths that discharge to the Snake River downstream from Milner Dam. Two intermediate-scale compartments exist along the southeast side of the aquifer and near Mud Lake.One intermediate-scale compartment along the southeast side of the aquifer discharges to the Snake River near American Fails

  6. Analytical solutions for benchmarking cold regions subsurface water flow and energy transport models: one-dimensional soil thaw with conduction and advection

    USGS Publications Warehouse

    Kurylyk, Barret L.; McKenzie, Jeffrey M; MacQuarrie, Kerry T. B.; Voss, Clifford I.

    2014-01-01

    Numerous cold regions water flow and energy transport models have emerged in recent years. Dissimilarities often exist in their mathematical formulations and/or numerical solution techniques, but few analytical solutions exist for benchmarking flow and energy transport models that include pore water phase change. This paper presents a detailed derivation of the Lunardini solution, an approximate analytical solution for predicting soil thawing subject to conduction, advection, and phase change. Fifteen thawing scenarios are examined by considering differences in porosity, surface temperature, Darcy velocity, and initial temperature. The accuracy of the Lunardini solution is shown to be proportional to the Stefan number. The analytical solution results obtained for soil thawing scenarios with water flow and advection are compared to those obtained from the finite element model SUTRA. Three problems, two involving the Lunardini solution and one involving the classic Neumann solution, are recommended as standard benchmarks for future model development and testing.

  7. Advection and dispersion heat transport mechanisms in the quantification of shallow geothermal resources and associated environmental impacts.

    PubMed

    Alcaraz, Mar; García-Gil, Alejandro; Vázquez-Suñé, Enric; Velasco, Violeta

    2016-02-01

    Borehole Heat Exchangers (BHEs) are increasingly being used to exploit shallow geothermal energy. This paper presents a new methodology to provide a response to the need for a regional quantification of the geothermal potential that can be extracted by BHEs and the associated environmental impacts. A set of analytical solutions facilitates accurate calculation of the heat exchange of BHEs with the ground and its environmental impacts. For the first time, advection and dispersion heat transport mechanisms and the temporal evolution from the start of operation of the BHE are taken into account in the regional estimation of shallow geothermal resources. This methodology is integrated in a GIS environment, which facilitates the management of input and output data at a regional scale. An example of the methodology's application is presented for Barcelona, in Spain. As a result of the application, it is possible to show the strengths and improvements of this methodology in the development of potential maps of low temperature geothermal energy as well as maps of environmental impacts. The minimum and maximum energy potential values for the study site are 50 and 1800 W/m(2) for a drilled depth of 100 m, proportionally to Darcy velocity. Regarding to thermal impacts, the higher the groundwater velocity and the energy potential, the higher the size of the thermal plume after 6 months of exploitation, whose length ranges from 10 to 27 m long. A sensitivity analysis was carried out in the calculation of heat exchange rate and its impacts for different scenarios and for a wide range of Darcy velocities. The results of this analysis lead to the conclusion that the consideration of dispersion effects and temporal evolution of the exploitation prevent significant differences up to a factor 2.5 in the heat exchange rate accuracy and up to several orders of magnitude in the impacts generated. PMID:26605833

  8. A Study on the Effect of Fracture Aperture Variability on Advective Transport in aFractured Shale using Discrete Fracture Network Modeling

    NASA Astrophysics Data System (ADS)

    Makedonska, N.; Karra, S.; Painter, S. L.; Viswanathan, H.; Gable, C. W.

    2014-12-01

    Natural gas from unconventional fossil energy sources such as shale and tight gasformations has a profound impact on US energy independence. The current state ofproduction of methane and other hydrocarbons from low permeability shale involvesprocesses such as hydraulic fracturing of rock, multiphase flow, and recovery of the gasvia these fractures. Although hydraulic fracturing has been used for the past couple ofdecades, little is known about the underlying mechanisms behind the production curvesthat are seen in the field, such as, reasons for 50-60% decline after the first year in typicalproduction curves.Numerical experiments on a realistic fractured shale system are presented toidentify the effect of complex flow of gas in fractures and matrix diffusion on theproduction curve. For characterizing flow, including the characteristics and geometriesfor the fracture networks, we use a methodology that incorporates a recently developeddiscrete fracture network meshing approach [1], which is combined with the highlyparallel PFLOTRAN subsurface flow and reactive transport code [2] and a new particletracking capability [3]. The results of this reservoir-scale methodology for analyzing thedecline in gas production rates indicate dominant flow in fractures in the initial highproduction rate. Increase in matrix diffusivity improves production recovery after theinitial production of gas from fractures. Moreover, it is observed that increasing aperturevariability within a single fracture has little effect on the production compared tovariations of the mean fracture aperture from fracture to fracture in a fracture network. [1] Hyman, J.D., Gable C.W., Painter S.L., and Makedonska N., ConformingDelaunay Triangulation of Stochastically Generated Three Dimensional DiscreteFracture Networks: a Feature Rejection Algorithm f or Meshing Strategy, SIAM J.Sci. Comput, 2014 (in press). [2] Lichtner, P.C., Hammond G.E., Lu C., Karra S., Bisht G., Mills R.T., and KumarJ., PFLOTRAN User

  9. Fast algorithms for transport models. Final report

    SciTech Connect

    Manteuffel, T.A.

    1994-10-01

    This project has developed a multigrid in space algorithm for the solution of the S{sub N} equations with isotropic scattering in slab geometry. The algorithm was developed for the Modified Linear Discontinuous (MLD) discretization in space which is accurate in the thick diffusion limit. It uses a red/black two-cell {mu}-line relaxation. This relaxation solves for all angles on two adjacent spatial cells simultaneously. It takes advantage of the rank-one property of the coupling between angles and can perform this inversion in O(N) operations. A version of the multigrid in space algorithm was programmed on the Thinking Machines Inc. CM-200 located at LANL. It was discovered that on the CM-200 a block Jacobi type iteration was more efficient than the block red/black iteration. Given sufficient processors all two-cell block inversions can be carried out simultaneously with a small number of parallel steps. The bottleneck is the need for sums of N values, where N is the number of discrete angles, each from a different processor. These are carried out by machine intrinsic functions and are well optimized. The overall algorithm has computational complexity O(log(M)), where M is the number of spatial cells. The algorithm is very efficient and represents the state-of-the-art for isotropic problems in slab geometry. For anisotropic scattering in slab geometry, a multilevel in angle algorithm was developed. A parallel version of the multilevel in angle algorithm has also been developed. Upon first glance, the shifted transport sweep has limited parallelism. Once the right-hand-side has been computed, the sweep is completely parallel in angle, becoming N uncoupled initial value ODE`s. The author has developed a cyclic reduction algorithm that renders it parallel with complexity O(log(M)). The multilevel in angle algorithm visits log(N) levels, where shifted transport sweeps are performed. The overall complexity is O(log(N)log(M)).

  10. MODFLOW-2000 : the U.S. Geological Survey modular ground-water model--documentation of the Advective-Transport Observation (ADV2) Package

    USGS Publications Warehouse

    Anderman, Evan R.; Hill, Mary Catherine

    2001-01-01

    Observations of the advective component of contaminant transport in steady-state flow fields can provide important information for the calibration of ground-water flow models. This report documents the Advective-Transport Observation (ADV2) Package, version 2, which allows advective-transport observations to be used in the three-dimensional ground-water flow parameter-estimation model MODFLOW-2000. The ADV2 Package is compatible with some of the features in the Layer-Property Flow and Hydrogeologic-Unit Flow Packages, but is not compatible with the Block-Centered Flow or Generalized Finite-Difference Packages. The particle-tracking routine used in the ADV2 Package duplicates the semi-analytical method of MODPATH, as shown in a sample problem. Particles can be tracked in a forward or backward direction, and effects such as retardation can be simulated through manipulation of the effective-porosity value used to calculate velocity. Particles can be discharged at cells that are considered to be weak sinks, in which the sink applied does not capture all the water flowing into the cell, using one of two criteria: (1) if there is any outflow to a boundary condition such as a well or surface-water feature, or (2) if the outflow exceeds a user specified fraction of the cell budget. Although effective porosity could be included as a parameter in the regression, this capability is not included in this package. The weighted sum-of-squares objective function, which is minimized in the Parameter-Estimation Process, was augmented to include the square of the weighted x-, y-, and z-components of the differences between the simulated and observed advective-front locations at defined times, thereby including the direction of travel as well as the overall travel distance in the calibration process. The sensitivities of the particle movement to the parameters needed to minimize the objective function are calculated for any particle location using the exact sensitivity

  11. Advection, diffusion and delivery over a network

    PubMed Central

    Heaton, Luke L.M.; López, Eduardo; Maini, Philip K.; Fricker, Mark D.; Jones, Nick S.

    2014-01-01

    Many biological, geophysical and technological systems involve the transport of resource over a network. In this paper we present an algorithm for calculating the exact concentration of resource at any point in space or time, given that the resource in the network is lost or delivered out of the network at a given rate, while being subject to advection and diffusion. We consider the implications of advection, diffusion and delivery for simple models of glucose delivery through a vascular network, and conclude that in certain circumstances, increasing the volume of blood and the number of glucose transporters can actually decrease the total rate of glucose delivery. We also consider the case of empirically determined fungal networks, and analyze the distribution of resource that emerges as such networks grow over time. Fungal growth involves the expansion of fluid filled vessels, which necessarily involves the movement of fluid. In three empirically determined fungal networks we found that the minimum currents consistent with the observed growth would effectively transport resource throughout the network over the time-scale of growth. This suggests that in foraging fungi, the active transport mechanisms observed in the growing tips may not be required for long range transport. PMID:23005783

  12. Pathogen and chemical transport in the karst limestone of the Biscayne aquifer: 2. Chemical retention from diffusion and slow advection

    USGS Publications Warehouse

    Shapiro, A.M.; Renken, R.A.; Harvey, R.W.; Zygnerski, M.R.; Metge, D.W.

    2008-01-01

    A tracer experiment, using a nonreactive tracer, was conducted as part of an investigation of the potential for chemical and pathogen migration to public supply wells that draw groundwater from the highly transmissive karst limestone of the Biscayne aquifer in southeastern Florida. The tracer was injected into the formation over approximately 1 h, and its recovery was monitored at a pumping well approximately 100 m from the injection well. The first detection of the tracer occurred after approximately 5 h, and the peak concentration occurred at about 8 h after the injection. The tracer was still detected in the production well more than 6 days after injection, and only 42% of the tracer mass was recovered. It is hypothesized that a combination of chemical diffusion and slow advection resulted in significant retention of the tracer in the formation, despite the high transmissivity of the karst limestone. The tail of the breakthrough curve exhibited a straight-line behavior with a slope of -2 on a log-log plot of concentration versus time. The -2 slope is hypothesized to be a function of slow advection, where the velocities of flow paths are hypothesized to range over several orders of magnitude. The flow paths having the slowest velocities result in a response similar to chemical diffusion. Chemical diffusion, due to chemical gradients, is still ongoing during the declining limb of the breakthrough curve, but this process is dwarfed by the magnitude of the mass flux by slow advection.

  13. Preliminary evaluation of the importance of existing hydraulic-head observation locations to advective-transport predictions, Death Valley regional flow system, California and Nevada

    SciTech Connect

    Hill, M.C.; Ely, D.M.; Tiedeman, C.R.; O'Brien, G.M.; D'Agnese, F.A.; Faunt, C.C.

    2001-08-01

    When a model is calibrated by nonlinear regression, calculated diagnostic statistics and measures of uncertainty provide a wealth of information about many aspects of the system. This report presents a method of ranking the likely importance of existing observation locations using measures of prediction uncertainty. It is suggested that continued monitoring is warranted at more important locations, and unwarranted or less warranted at less important locations. The report develops the methodology and then demonstrates it using the hydraulic-head observation locations of a three-layer model of the Death Valley regional flow system (DVRFS). The predictions of interest are subsurface transport from beneath Yucca Mountain and 14 underground Test Area (UGTA) sites. The advective component of transport is considered because it is the component most affected by the system dynamics represented by the regional-scale model being used. The problem is addressed using the capabilities of the U.S. Geological Survey computer program MODFLOW-2000, with its ADVective-Travel Observation (ADV) Package, and an additional computer program developed for this work.

  14. An Improved Neutron Transport Algorithm for HZETRN

    NASA Technical Reports Server (NTRS)

    Slaba, Tony C.; Blattnig, Steve R.; Clowdsley, Martha S.; Walker, Steven A.; Badavi, Francis F.

    2010-01-01

    Long term human presence in space requires the inclusion of radiation constraints in mission planning and the design of shielding materials, structures, and vehicles. In this paper, the numerical error associated with energy discretization in HZETRN is addressed. An inadequate numerical integration scheme in the transport algorithm is shown to produce large errors in the low energy portion of the neutron and light ion fluence spectra. It is further shown that the errors result from the narrow energy domain of the neutron elastic cross section spectral distributions, and that an extremely fine energy grid is required to resolve the problem under the current formulation. Two numerical methods are developed to provide adequate resolution in the energy domain and more accurately resolve the neutron elastic interactions. Convergence testing is completed by running the code for various environments and shielding materials with various energy grids to ensure stability of the newly implemented method.

  15. A mesh-adaptive collocation technique for the simulation of advection-dominated single- and multiphase transport phenomena in porous media

    SciTech Connect

    Koch, M.

    1995-12-31

    A new mesh-adaptive 1D collocation technique has been developed to efficiently solve transient advection-dominated transport problems in porous media that are governed by a hyperbolic/parabolic (singularly perturbed) PDE. After spatial discretization a singularly perturbed ODE is obtained which is solved by a modification of the COLNEW ODE-collocation code. The latter also contains an adaptive mesh procedure that has been enhanced here to resolve linear and nonlinear transport flow problems with steep fronts where regular FD and FE methods often fail. An implicit first-order backward Euler and a third-order Taylor-Donea technique are employed for the time integration. Numerical simulations on a variety of high Peclet-number transport phenomena as they occur in realistic porous media flow situations are presented. Examples include classical linear advection-diffusion, nonlinear adsorption, two-phase Buckley-Leverett flow without and with capillary forces (Rapoport-Leas equation) and Burgers` equation for inviscid fluid flow. In most of these examples sharp fronts and/or shocks develop which are resolved in an oscillation-free manner by the present adaptive collocation method. The backward Euler method has some amount of numerical dissipation is observed when the time-steps are too large. The third-order Taylor-Donea technique is less dissipative but is more prone to numerical oscillations. The simulations show that for the efficient solution of nonlinear singularly perturbed PDE`s governing flow transport a careful balance must be struck between the optimal mesh adaptation, the nonlinear iteration method and the time-stepping procedure. More theoretical research is needed with this regard.

  16. Using a Gas-Phase Tracer Test to Characterize the Impact of Landfill Gas Generation on Advective-Dispersive Transport of VOCs in the Vadose Zone

    PubMed Central

    Monger, Gregg R.; Duncan, Candice Morrison; Brusseau, Mark L.

    2015-01-01

    A gas-phase tracer test (GTT) was conducted at a landfill in Tucson, AZ, to help elucidate the impact of landfill gas generation on the transport and fate of chlorinated aliphatic volatile organic contaminants (VOCs). Sulfur hexafluoride (SF6) was used as the non-reactive gas tracer. Gas samples were collected from a multiport monitoring well located 15.2 m from the injection well, and analyzed for SF6, CH4, CO2, and VOCs. The travel times determined for SF6 from the tracer test are approximately two to ten times smaller than estimated travel times that incorporate transport by only gas-phase diffusion. In addition, significant concentrations of CH4 and CO2 were measured, indicating production of landfill gas. Based on these results, it is hypothesized that the enhanced rates of transport observed for SF6 are caused by advective transport associated with landfill gas generation. The rates of transport varied vertically, which is attributed to multiple factors including spatial variability of water content, refuse mass, refuse permeability, and gas generation. PMID:26380532

  17. Adaptive time stepping algorithm for Lagrangian transport models: Theory and idealised test cases

    NASA Astrophysics Data System (ADS)

    Shah, Syed Hyder Ali Muttaqi; Heemink, Arnold Willem; Gräwe, Ulf; Deleersnijder, Eric

    2013-08-01

    Random walk simulations have an excellent potential in marine and oceanic modelling. This is essentially due to their relative simplicity and their ability to represent advective transport without being plagued by the deficiencies of the Eulerian methods. The physical and mathematical foundations of random walk modelling of turbulent diffusion have become solid over the years. Random walk models rest on the theory of stochastic differential equations. Unfortunately, the latter and the related numerical aspects have not attracted much attention in the oceanic modelling community. The main goal of this paper is to help bridge the gap by developing an efficient adaptive time stepping algorithm for random walk models. Its performance is examined on two idealised test cases of turbulent dispersion; (i) pycnocline crossing and (ii) non-flat isopycnal diffusion, which are inspired by shallow-sea dynamics and large-scale ocean transport processes, respectively. The numerical results of the adaptive time stepping algorithm are compared with the fixed-time increment Milstein scheme, showing that the adaptive time stepping algorithm for Lagrangian random walk models is more efficient than its fixed step-size counterpart without any loss in accuracy.

  18. STATISTICAL METHODOLOGY FOR ESTIMATING TRANSPORT PARAMETERS: THEORY AND APPLICATIONS TO ONE-DOMENSIONAL ADVECTIVE-DISPERSIVE SYSTEMS.

    USGS Publications Warehouse

    Wagner, Brian J.; Gorelick, Steven M.

    1986-01-01

    A simulation nonlinear multiple-regression methodology for estimating parameters that characterize the transport of contaminants is developed and demonstrated. Finite difference containment transport simulation is combined with a nonlinear weighted least squares multiple-regression procedure. The technique provides optimal parameter estimates and gives statistics for assessing the reliability of these estimates under certain general assumptions about the distributions of the random measurement errors. Monte Carlo analysis is used to estimate parameter reliability for a hypothetical homogeneous soil column for which concentration data contain large random measurement errors. The value of data collected spatially versus data collected temporally was investigated for estimation of velocity, dispersion coefficient, effective porosity, first-order decay rate, and zero-order production. The use of spatial data gave estimates that were 2-3 times more reliable than estimates based on temporal data for all parameters except velocity. (Estimated author abstract) Refs.

  19. Modelling coupled chemico-osmotic and advective-diffusive transport of nitrate salts in the Callovo-Oxfordian Clay

    NASA Astrophysics Data System (ADS)

    Baechler, S.; Croisé, J.; Altmann, S.

    2012-12-01

    Chemico-osmosis is a recognized phenomenon taking place in clay mineral-rich sedimentary formations and a number of questions have been raised concerning its potential effects on pressure fields in and around underground radioactive waste repositories installed in such formations. Certain radioactive waste packages contain large quantities of nitrate salts whose release might result in the presence of highly concentrated salt solutions in the disposal cells, during their resaturation after closure of the facility. This would lead to large solute concentration gradients within the formation's porewater which could then potentially induce significant chemico-osmotic fluxes. In this paper, we assess the impact of chemico-osmotic fluxes on the water pressure during the post-closure period of a typical disposal cell for intermediate-level, long-lived bituminised radioactive waste in the Callovo-Oxfordian Clay formation. A numerical model of chemico-osmotic water flow and solute transport has been developed based on the work of Bader and Kooi (2005) [5], and including Bresler's dependence of osmotic efficiency on concentration and compaction state [9]. Model validity has been extended to highly concentrated solutions by incorporating a concentration-dependent activity coefficient, based on the Pitzer's equations. Results show that due to the strong dependence of the osmotic coefficient on concentration, the impact of chemico-osmosis on water flow and on the pressure field around the disposal cell is relatively low. A maximum overpressure of the order of 1 MPa was obtained. No difference in the simulation results were noticed for disposal cell solutions having concentrations higher than 1 M NaNO3. Differences between simulations were found to be almost entirely due to Bresler's relationship i.e., the model of the dependence between osmotic efficiency and concentration, and only slightly on the activity coefficient correction. Questions remain regarding the appropriate

  20. Designing for chaos: applications of chaotic advection at the microscale: One contribution of 11 to a Theme 'Transport and mixing at the microscale'

    NASA Astrophysics Data System (ADS)

    Stremler, Mark A.; Haselton, F. R.; Aref, Hassan

    2004-05-01

    Chaotic advection can play an important role in efficient microfluidic mixers. We discuss a design paradigm that exploits chaotic advection and illustrate by two recent examples, namely enhancing gene expression profiling and constructing an in-line microfluidic mixing channel, how application of this paradigm has led to successful micromixers. We suggest that 'designing for chaos', that is, basing practical mixer design on chaotic advection analysis, is a promising approach to adopt in this developing field which otherwise has little to guide it and is constrained by issues of scale and manufacturability.

  1. A computational study of routing algorithms for realistic transportation networks

    SciTech Connect

    Jacob, R.; Marathe, M.V.; Nagel, K.

    1998-12-01

    The authors carry out an experimental analysis of a number of shortest path (routing) algorithms investigated in the context of the TRANSIMS (Transportation Analysis and Simulation System) project. The main focus of the paper is to study how various heuristic and exact solutions, associated data structures affected the computational performance of the software developed especially for realistic transportation networks. For this purpose the authors have used Dallas Fort-Worth road network with very high degree of resolution. The following general results are obtained: (1) they discuss and experimentally analyze various one-one shortest path algorithms, which include classical exact algorithms studied in the literature as well as heuristic solutions that are designed to take into account the geometric structure of the input instances; (2) they describe a number of extensions to the basic shortest path algorithm. These extensions were primarily motivated by practical problems arising in TRANSIMS and ITS (Intelligent Transportation Systems) related technologies. Extensions discussed include--(i) time dependent networks, (ii) multi-modal networks, (iii) networks with public transportation and associated schedules. Computational results are provided to empirically compare the efficiency of various algorithms. The studies indicate that a modified Dijkstra`s algorithm is computationally fast and an excellent candidate for use in various transportation planning applications as well as ITS related technologies.

  2. Comparison of transport and attachment behaviors of Cryptosporidium parvum oocysts and oocyst-sized microspheres being advected through three minerologically different granular porous media.

    PubMed

    Mohanram, Arvind; Ray, Chittaranjan; Harvey, Ronald W; Metge, David W; Ryan, Joseph N; Chorover, Jon; Eberl, D D

    2010-10-01

    In order to gain more information about the fate of Cryptosporidium parvum oocysts in tropical volcanic soils, the transport and attachment behaviors of oocysts and oocyst-sized polystyrene microspheres were studied in the presence of two soils. These soils were chosen because of their differing chemical and physical properties, i.e., an organic-rich (43-46% by mass) volcanic ash-derived soil from the island of Hawaii, and a red, iron (22-29% by mass), aluminum (29-45% by mass), and clay-rich (68-76% by mass) volcanic soil from the island of Oahu. A third agricultural soil, an organic- (13% by mass) and quartz-rich (40% by mass) soil from Illinois, was included for reference. In 10-cm long flow-through columns, oocysts and microspheres advecting through the red volcanic soil were almost completely (98% and 99%) immobilized. The modest breakthrough resulted from preferential flow-path structure inadvertently created by soil-particle aggregation during the re-wetting process. Although a high (99%) removal of oocysts and microsphere within the volcanic ash soil occurred initially, further examination revealed that transport was merely retarded because of highly reversible interactions with grain surfaces. Judging from the slope of the substantive and protracted tail of the breakthrough curve for the 1.8-μm microspheres, almost all (>99%) predictably would be recovered within ∼4000 pore volumes. This suggests that once contaminated, the volcanic ash soil could serve as a reservoir for subsequent contamination of groundwater, at least for pathogens of similar size or smaller. Because of the highly reversible nature of organic colloid immobilization in this soil type, C. parvum could contaminate surface water should overland flow during heavy precipitation events pick up near-surface grains to which they are attached. Surprisingly, oocyst and microsphere attachment to the reference soil from Illinois appeared to be at least as sensitive to changes in pH as was

  3. Comparison of transport and attachment behaviors of Cryptosporidium parvum oocysts and oocyst-sized microspheres being advected through three minerologically different granular porous media

    USGS Publications Warehouse

    Mohanram, A.; Ray, C.; Harvey, R.W.; Metge, D.W.; Ryan, J.N.; Chorover, J.; Eberl, D.D.

    2010-01-01

    In order to gain more information about the fate of Cryptosporidium parvum oocysts in tropical volcanic soils, the transport and attachment behaviors of oocysts and oocyst-sized polystyrene microspheres were studied in the presence of two soils. These soils were chosen because of their differing chemical and physical properties, i.e., an organic-rich (43-46% by mass) volcanic ash-derived soil from the island of Hawaii, and a red, iron (22-29% by mass), aluminum (29-45% by mass), and clay-rich (68-76% by mass) volcanic soil from the island of Oahu. A third agricultural soil, an organic- (13% by mass) and quartz-rich (40% by mass) soil from Illinois, was included for reference. In 10-cm long flow-through columns, oocysts and microspheres advecting through the red volcanic soil were almost completely (98% and 99%) immobilized. The modest breakthrough resulted from preferential flow-path structure inadvertently created by soil-particle aggregation during the re-wetting process. Although a high (99%) removal of oocysts and microsphere within the volcanic ash soil occurred initially, further examination revealed that transport was merely retarded because of highly reversible interactions with grain surfaces. Judging from the slope of the substantive and protracted tail of the breakthrough curve for the 1.8-??m microspheres, almost all (>99%) predictably would be recovered within ~4000 pore volumes. This suggests that once contaminated, the volcanic ash soil could serve as a reservoir for subsequent contamination of groundwater, at least for pathogens of similar size or smaller. Because of the highly reversible nature of organic colloid immobilization in this soil type, C. parvum could contaminate surface water should overland flow during heavy precipitation events pick up near-surface grains to which they are attached. Surprisingly, oocyst and microsphere attachment to the reference soil from Illinois appeared to be at least as sensitive to changes in pH as was observed

  4. A Cultural Algorithm for the Urban Public Transportation

    NASA Astrophysics Data System (ADS)

    Reyes, Laura Cruz; Zezzatti, Carlos Alberto Ochoa Ortíz; Santillán, Claudia Gómez; Hernández, Paula Hernández; Fuerte, Mercedes Villa

    In the last years the population of Leon City, located in the state of Guanajuato in Mexico, has been considerably increasing, causing the inhabitants to waste most of their time with public transportation. As a consequence of the demographic growth and traffic bottleneck, users deal with the daily problem of optimizing their travel so that to get to their destination on time. To give a solution to this problem of obtaining an optimized route between two points in a public transportation, a method based on the cultural algorithms technique is proposed. Cultural algorithms are used in the generated knowledge in a set of time periods for a same population, using a belief space. These types of algorithms are a recent creation. The proposed method seeks a path that minimizes the time of traveling and the number of transfers. The results of the experiment show that the technique of the cultural algorithms is applicable to these kinds of multi-objective problems.

  5. Distributed Parallel Particle Advection using Work Requesting

    SciTech Connect

    Muller, Cornelius; Camp, David; Hentschel, Bernd; Garth, Christoph

    2013-09-30

    Particle advection is an important vector field visualization technique that is difficult to apply to very large data sets in a distributed setting due to scalability limitations in existing algorithms. In this paper, we report on several experiments using work requesting dynamic scheduling which achieves balanced work distribution on arbitrary problems with minimal communication overhead. We present a corresponding prototype implementation, provide and analyze benchmark results, and compare our results to an existing algorithm.

  6. New Algorithms for Large-scale 3D Radiation Transport

    NASA Astrophysics Data System (ADS)

    Lentz, Eric J.

    2009-05-01

    Radiation transport is critical not only for analysis of astrophysical objects but also for the dynamical transport of energy within. Increased fidelity and dimensionality of the other components of such models requires a similar improvement in the radiation transport. Modern astrophysical simulations can be large enough that the values for a single variable for the entire computational domain cannot be stored on a single compute node. The natural solution is to decompose the physical domain into pieces with each node responsible for a single sub-domain. Using localized plus "ghost" zone data works well for problems like explicit hydrodynamics or nuclear reaction networks with modest impact from inter-process communication. Unfortunately, radiation transport is an inherently non-local process that couples the entire model domain together and efficient algorithms are needed to conquer this problem. In this poster, I present the early development of a new parallel, 3-D transport code using ray tracing to formally solve the transport equation across numerically decomposed domains. The algorithm model takes advantage of one-sided communication to develop a scalable, parallel formal solver. Other aspects and future direction of the parallel code development such as scalability and the inclusion of scattering will also be discussed.

  7. Fast algorithms for transport models. Technical progress report

    SciTech Connect

    Manteuffel, T.A.

    1992-12-01

    The objective of this project is the development of numerical solution techniques for deterministic models of the transport of neutral and charged particles and the demonstration of their effectiveness in both a production environment and on advanced architecture computers. The primary focus is on various versions of the linear Boltzman equation. These equations are fundamental in many important applications. This project is an attempt to integrate the development of numerical algorithms with the process of developing production software. A major thrust of this reject will be the implementation of these algorithms on advanced architecture machines that reside at the Advanced Computing Laboratory (ACL) at Los Alamos National Laboratories (LANL).

  8. VAC: Versatile Advection Code

    NASA Astrophysics Data System (ADS)

    Tóth, Gábor; Keppens, Rony

    2012-07-01

    The Versatile Advection Code (VAC) is a freely available general hydrodynamic and magnetohydrodynamic simulation software that works in 1, 2 or 3 dimensions on Cartesian and logically Cartesian grids. VAC runs on any Unix/Linux system with a Fortran 90 (or 77) compiler and Perl interpreter. VAC can run on parallel machines using either the Message Passing Interface (MPI) library or a High Performance Fortran (HPF) compiler.

  9. Final Technical Report - Stochastic Analysis of Advection-Diffusion-reaction Systems with Applications to Reactive Transport in Porous Media - DE-FG02-07ER24818

    SciTech Connect

    Karniadakis, George Em

    2014-03-11

    The main objective of this project is to develop new computational tools for uncertainty quantifica- tion (UQ) of systems governed by stochastic partial differential equations (SPDEs) with applications to advection-diffusion-reaction systems. We pursue two complementary approaches: (1) generalized polynomial chaos and its extensions and (2) a new theory on deriving PDF equations for systems subject to color noise. The focus of the current work is on high-dimensional systems involving tens or hundreds of uncertain parameters.

  10. An Improved Neutron Transport Algorithm for Space Radiation

    NASA Technical Reports Server (NTRS)

    Heinbockel, John H.; Clowdsley, Martha S.; Wilson, John W.

    2000-01-01

    A low-energy neutron transport algorithm for use in space radiation protection is developed. The algorithm is based upon a multigroup analysis of the straight-ahead Boltzmann equation by using a mean value theorem for integrals. This analysis is accomplished by solving a realistic but simplified neutron transport test problem. The test problem is analyzed by using numerical and analytical procedures to obtain an accurate solution within specified error bounds. Results from the test problem are then used for determining mean values associated with rescattering terms that are associated with a multigroup solution of the straight-ahead Boltzmann equation. The algorithm is then coupled to the Langley HZETRN code through the evaporation source term. Evaluation of the neutron fluence generated by the solar particle event of February 23, 1956, for a water and an aluminum-water shield-target configuration is then compared with LAHET and MCNPX Monte Carlo code calculations for the same shield-target configuration. The algorithm developed showed a great improvement in results over the unmodified HZETRN solution. In addition, a two-directional solution of the evaporation source showed even further improvement of the fluence near the front of the water target where diffusion from the front surface is important.

  11. Steady-state and transient models of groundwater flow and advective transport, Eastern Snake River Plain aquifer, Idaho National Laboratory and vicinity, Idaho

    USGS Publications Warehouse

    Ackerman, Daniel J.; Rousseau, Joseph P.; Rattray, Gordon W.; Fisher, Jason C.

    2010-01-01

    Three-dimensional steady-state and transient models of groundwater flow and advective transport in the eastern Snake River Plain aquifer were developed by the U.S. Geological Survey in cooperation with the U.S. Department of Energy. The steady-state and transient flow models cover an area of 1,940 square miles that includes most of the 890 square miles of the Idaho National Laboratory (INL). A 50-year history of waste disposal at the INL has resulted in measurable concentrations of waste contaminants in the eastern Snake River Plain aquifer. Model results can be used in numerical simulations to evaluate the movement of contaminants in the aquifer. Saturated flow in the eastern Snake River Plain aquifer was simulated using the MODFLOW-2000 groundwater flow model. Steady-state flow was simulated to represent conditions in 1980 with average streamflow infiltration from 1966-80 for the Big Lost River, the major variable inflow to the system. The transient flow model simulates groundwater flow between 1980 and 1995, a period that included a 5-year wet cycle (1982-86) followed by an 8-year dry cycle (1987-94). Specified flows into or out of the active model grid define the conditions on all boundaries except the southwest (outflow) boundary, which is simulated with head-dependent flow. In the transient flow model, streamflow infiltration was the major stress, and was variable in time and location. The models were calibrated by adjusting aquifer hydraulic properties to match simulated and observed heads or head differences using the parameter-estimation program incorporated in MODFLOW-2000. Various summary, regression, and inferential statistics, in addition to comparisons of model properties and simulated head to measured properties and head, were used to evaluate the model calibration. Model parameters estimated for the steady-state calibration included hydraulic conductivity for seven of nine hydrogeologic zones and a global value of vertical anisotropy. Parameters

  12. How to Find a Bug in Ten Thousand Lines Transport Solver? Outline of Experiences from AN Advection-Diffusion Code Verification

    NASA Astrophysics Data System (ADS)

    Zamani, K.; Bombardelli, F.

    2011-12-01

    Almost all natural phenomena on Earth are highly nonlinear. Even simplifications to the equations describing nature usually end up being nonlinear partial differential equations. Transport (ADR) equation is a pivotal equation in atmospheric sciences and water quality. This nonlinear equation needs to be solved numerically for practical purposes so academicians and engineers thoroughly rely on the assistance of numerical codes. Thus, numerical codes require verification before they are utilized for multiple applications in science and engineering. Model verification is a mathematical procedure whereby a numerical code is checked to assure the governing equation is properly solved as it is described in the design document. CFD verification is not a straightforward and well-defined course. Only a complete test suite can uncover all the limitations and bugs. Results are needed to be assessed to make a distinction between bug-induced-defect and innate limitation of a numerical scheme. As Roache (2009) said, numerical verification is a state-of-the-art procedure. Sometimes novel tricks work out. This study conveys the synopsis of the experiences we gained during a comprehensive verification process which was done for a transport solver. A test suite was designed including unit tests and algorithmic tests. Tests were layered in complexity in several dimensions from simple to complex. Acceptance criteria defined for the desirable capabilities of the transport code such as order of accuracy, mass conservation, handling stiff source term, spurious oscillation, and initial shape preservation. At the begining, mesh convergence study which is the main craft of the verification is performed. To that end, analytical solution of ADR equation gathered. Also a new solution was derived. In the more general cases, lack of analytical solution could be overcome through Richardson Extrapolation and Manufactured Solution. Then, two bugs which were concealed during the mesh convergence

  13. Comparison of genetic algorithm and imperialist competitive algorithms in predicting bed load transport in clean pipe.

    PubMed

    Ebtehaj, Isa; Bonakdari, Hossein

    2014-01-01

    The existence of sediments in wastewater greatly affects the performance of the sewer and wastewater transmission systems. Increased sedimentation in wastewater collection systems causes problems such as reduced transmission capacity and early combined sewer overflow. The article reviews the performance of the genetic algorithm (GA) and imperialist competitive algorithm (ICA) in minimizing the target function (mean square error of observed and predicted Froude number). To study the impact of bed load transport parameters, using four non-dimensional groups, six different models have been presented. Moreover, the roulette wheel selection method is used to select the parents. The ICA with root mean square error (RMSE) = 0.007, mean absolute percentage error (MAPE) = 3.5% show better results than GA (RMSE = 0.007, MAPE = 5.6%) for the selected model. All six models return better results than the GA. Also, the results of these two algorithms were compared with multi-layer perceptron and existing equations. PMID:25429460

  14. Concentration through large advection

    NASA Astrophysics Data System (ADS)

    Aleja, D.; López-Gómez, J.

    2014-11-01

    In this paper we extend the elegant results of Chen, Lam and Lou [6, Section 2], where a concentration phenomenon was established as the advection blows up, to a general class of adventive-diffusive generalized logistic equations of degenerate type. Our improvements are really sharp as we allow the carrying capacity of the species to vanish in some subdomain with non-empty interior. The main technical devices used in the derivation of the concentration phenomenon are Proposition 3.2 of Cano-Casanova and López-Gómez [5], Theorem 2.4 of Amann and López-Gómez [1] and the classical Harnack inequality. By the relevance of these results in spatial ecology, complete technical details seem imperative, because the proof of Theorem 2.2 of [6] contains some gaps originated by an “optimistic” use of Proposition 3.2 of [5]. Some of the general assumptions of [6] are substantially relaxed.

  15. Pangolin v1.0, a conservative 2-D advection model towards large-scale parallel calculation

    NASA Astrophysics Data System (ADS)

    Praga, A.; Cariolle, D.; Giraud, L.

    2015-02-01

    To exploit the possibilities of parallel computers, we designed a large-scale bidimensional atmospheric advection model named Pangolin. As the basis for a future chemistry-transport model, a finite-volume approach for advection was chosen to ensure mass preservation and to ease parallelization. To overcome the pole restriction on time steps for a regular latitude-longitude grid, Pangolin uses a quasi-area-preserving reduced latitude-longitude grid. The features of the regular grid are exploited to reduce the memory footprint and enable effective parallel performances. In addition, a custom domain decomposition algorithm is presented. To assess the validity of the advection scheme, its results are compared with state-of-the-art models on algebraic test cases. Finally, parallel performances are shown in terms of strong scaling and confirm the efficient scalability up to a few hundred cores.

  16. Modeling the adsorption of Cr(III) from aqueous solution onto Agave lechuguilla biomass: study of the advective and dispersive transport.

    PubMed

    Romero-González, J; Walton, J C; Peralta-Videa, J R; Rodríguez, E; Romero, J; Gardea-Torresdey, J L

    2009-01-15

    The biosorption of Cr(III) onto packed columns of Agave lechuguilla was analyzed using an advective-dispersive (AD) model and its analytical solution. Characteristic parameters such as axial dispersion coefficients, retardation factors, and distribution coefficients were predicted as functions of inlet ion metal concentration, time, flow rate, bed density, cross-sectional column area, and bed length. The root-mean-square-error (RMSE) values 0.122, 0.232, and 0.285 corresponding to the flow rates of 1, 2, and 3 (10(-3))dm3min(-1), respectively, indicated that the AD model provides an excellent approximation of the simulation of lumped breakthrough curves for the adsorption of Cr(III) by lechuguilla biomass. Therefore, the model can be used for design purposes to predict the effect of varying operational conditions. PMID:18462882

  17. Adaptive domain decomposition methods for advection-diffusion problems

    SciTech Connect

    Carlenzoli, C.; Quarteroni, A.

    1995-12-31

    Domain decomposition methods can perform poorly on advection-diffusion equations if diffusion is dominated by advection. Indeed, the hyperpolic part of the equations could affect the behavior of iterative schemes among subdomains slowing down dramatically their rate of convergence. Taking into account the direction of the characteristic lines we introduce suitable adaptive algorithms which are stable with respect to the magnitude of the convective field in the equations and very effective on bear boundary value problems.

  18. Dynamic airspace configuration algorithms for next generation air transportation system

    NASA Astrophysics Data System (ADS)

    Wei, Jian

    The National Airspace System (NAS) is under great pressure to safely and efficiently handle the record-high air traffic volume nowadays, and will face even greater challenge to keep pace with the steady increase of future air travel demand, since the air travel demand is projected to increase to two to three times the current level by 2025. The inefficiency of traffic flow management initiatives causes severe airspace congestion and frequent flight delays, which cost billions of economic losses every year. To address the increasingly severe airspace congestion and delays, the Next Generation Air Transportation System (NextGen) is proposed to transform the current static and rigid radar based system to a dynamic and flexible satellite based system. New operational concepts such as Dynamic Airspace Configuration (DAC) have been under development to allow more flexibility required to mitigate the demand-capacity imbalances in order to increase the throughput of the entire NAS. In this dissertation, we address the DAC problem in the en route and terminal airspace under the framework of NextGen. We develop a series of algorithms to facilitate the implementation of innovative concepts relevant with DAC in both the en route and terminal airspace. We also develop a performance evaluation framework for comprehensive benefit analyses on different aspects of future sector design algorithms. First, we complete a graph based sectorization algorithm for DAC in the en route airspace, which models the underlying air route network with a weighted graph, converts the sectorization problem into the graph partition problem, partitions the weighted graph with an iterative spectral bipartition method, and constructs the sectors from the partitioned graph. The algorithm uses a graph model to accurately capture the complex traffic patterns of the real flights, and generates sectors with high efficiency while evenly distributing the workload among the generated sectors. We further improve

  19. Impacts of the Convective Transport Algorithm on Atmospheric Composition and Ozone-Climate Feedbacks in GEOS-CCM

    NASA Technical Reports Server (NTRS)

    Pawson, S.; Nielsen, Jon E.; Oman, L.; Douglass, A. R.; Duncan, B. N.; Zhu, Z.

    2012-01-01

    Convective transport is one of the dominant factors in determining the composition of the troposphere. It is the main mechanism for lofting constituents from near-surface source regions to the middle and upper troposphere, where they can subsequently be advected over large distances. Gases reaching the upper troposphere can also be injected through the tropopause and play a subsequent role in the lower stratospheric ozone balance. Convection codes in climate models remain a great source of uncertainty for both the energy balance of the general circulation and the transport of constituents. This study uses the Goddard Earth Observing System Chemistry-Climate Model (GEOS CCM) to perform a controlled experiment that isolates the impact of convective transport of constituents from the direct changes on the atmospheric energy balance. Two multi-year simulations are conducted. In the first, the thermodynamic variable, moisture, and all trace gases are transported using the multi-plume Relaxed-Arakawa-Schubert (RAS) convective parameterization. In the second simulation, RAS impacts the thermodynamic energy and moisture in this standard manner, but all other constituents are transported differently. The accumulated convective mass fluxes (including entrainment and detrainment) computed at each time step of the GCM are used with a diffusive (bulk) algorithm for the vertical transport, which above all is less efficient at transporting constituents from the lower to the upper troposphere. Initial results show the expected differences in vertical structure of trace gases such as carbon monoxide, but also show differences in lower stratospheric ozone, in a region where it can potentially impact the climate state of the model. This work will investigate in more detail the impact of convective transport changes by comparing the two simulations over many years (1996-2010), focusing on comparisons with observed constituent distributions and similarities and differences of patterns

  20. A Fano cavity test for Monte Carlo proton transport algorithms

    SciTech Connect

    Sterpin, Edmond; Sorriaux, Jefferson; Souris, Kevin; Vynckier, Stefaan; Bouchard, Hugo

    2014-01-15

    Purpose: In the scope of reference dosimetry of radiotherapy beams, Monte Carlo (MC) simulations are widely used to compute ionization chamber dose response accurately. Uncertainties related to the transport algorithm can be verified performing self-consistency tests, i.e., the so-called “Fano cavity test.” The Fano cavity test is based on the Fano theorem, which states that under charged particle equilibrium conditions, the charged particle fluence is independent of the mass density of the media as long as the cross-sections are uniform. Such tests have not been performed yet for MC codes simulating proton transport. The objectives of this study are to design a new Fano cavity test for proton MC and to implement the methodology in two MC codes: Geant4 and PENELOPE extended to protons (PENH). Methods: The new Fano test is designed to evaluate the accuracy of proton transport. Virtual particles with an energy ofE{sub 0} and a mass macroscopic cross section of (Σ)/(ρ) are transported, having the ability to generate protons with kinetic energy E{sub 0} and to be restored after each interaction, thus providing proton equilibrium. To perform the test, the authors use a simplified simulation model and rigorously demonstrate that the computed cavity dose per incident fluence must equal (ΣE{sub 0})/(ρ) , as expected in classic Fano tests. The implementation of the test is performed in Geant4 and PENH. The geometry used for testing is a 10 × 10 cm{sup 2} parallel virtual field and a cavity (2 × 2 × 0.2 cm{sup 3} size) in a water phantom with dimensions large enough to ensure proton equilibrium. Results: For conservative user-defined simulation parameters (leading to small step sizes), both Geant4 and PENH pass the Fano cavity test within 0.1%. However, differences of 0.6% and 0.7% were observed for PENH and Geant4, respectively, using larger step sizes. For PENH, the difference is attributed to the random-hinge method that introduces an artificial energy

  1. Advection around ventilated U-shaped burrows: A model study

    NASA Astrophysics Data System (ADS)

    Brand, Andreas; Lewandowski, JöRg; Hamann, Enrico; Nützmann, Gunnar

    2013-05-01

    Advective transport in the porous matrix of sediments surrounding burrows formed by fauna such as Chironomus plumosus has been generally neglected. A positron emission tomography study recently revealed that the pumping activity of the midge larvae can indeed induce fluid flow in the sediment. We present a numerical model study which explores the conditions at which advective transport in the sediment becomes relevant. A 0.15 m deep U-shaped burrow with a diameter of 0.002 m within the sediment was represented in a 3-D domain. Fluid flow in the burrow was calculated using the Navier-Stokes equation for incompressible laminar flow in the burrow, and flow in the sediment was described by Darcy's law. Nonreactive and reactive transport scenarios were simulated considering diffusion and advection. The pumping activity of the model larva results in considerable advective flow in the sediment at reasonable high permeabilities with flow velocities of up to 7.0 × 10-6 m s-1 close to the larva for a permeability of 3 × 10-12 m2. At permeabilities below 7 × 10-13 m2 advection is negligible compared to diffusion. Reactive transport simulations using first-order kinetics for oxygen revealed that advective flux into the sediment downstream of the pumping larva enhances sedimentary uptake, while the advective flux into the burrow upstream of the larvae inhibits diffusive sedimentary uptake. Despite the fact that both effects cancel each other with respect to total solute uptake, the advection-induced asymmetry in concentration distribution can lead to a heterogeneous solute and redox distribution in the sediment relevant to complex reaction networks.

  2. An upscaled approach for transport in media with extended tailing due to back-diffusion using analytical and numerical solutions of the advection dispersion equation

    NASA Astrophysics Data System (ADS)

    Parker, Jack C.; Kim, Ungtae

    2015-11-01

    The mono-continuum advection-dispersion equation (mADE) is commonly regarded as unsuitable for application to media that exhibit rapid breakthrough and extended tailing associated with diffusion between high and low permeability regions. This paper demonstrates that the mADE can be successfully used to model such conditions if certain issues are addressed. First, since hydrodynamic dispersion, unlike molecular diffusion, cannot occur upstream of the contaminant source, models must be formulated to prevent "back-dispersion." Second, large variations in aquifer permeability will result in differences between volume-weighted average concentration (resident concentration) and flow-weighted average concentration (flux concentration). Water samples taken from wells may be regarded as flux concentrations, while soil samples may be analyzed to determine resident concentrations. While the mADE is usually derived in terms of resident concentration, it is known that a mADE of the same mathematical form may be written in terms of flux concentration. However, when solving the latter, the mathematical transformation of a flux boundary condition applied to the resident mADE becomes a concentration type boundary condition for the flux mADE. Initial conditions must also be consistent with the form of the mADE that is to be solved. Thus, careful attention must be given to the type of concentration data that is available, whether resident or flux concentrations are to be simulated, and to boundary and initial conditions. We present 3-D analytical solutions for resident and flux concentrations, discuss methods of solving numerical models to obtain resident and flux concentrations, and compare results for hypothetical problems. We also present an upscaling method for computing "effective" dispersivities and other mADE model parameters in terms of physically meaningful parameters in a diffusion-limited mobile-immobile model. Application of the latter to previously published studies of

  3. An upscaled approach for transport in media with extended tailing due to back-diffusion using analytical and numerical solutions of the advection dispersion equation.

    PubMed

    Parker, Jack C; Kim, Ungtae

    2015-11-01

    The mono-continuum advection-dispersion equation (mADE) is commonly regarded as unsuitable for application to media that exhibit rapid breakthrough and extended tailing associated with diffusion between high and low permeability regions. This paper demonstrates that the mADE can be successfully used to model such conditions if certain issues are addressed. First, since hydrodynamic dispersion, unlike molecular diffusion, cannot occur upstream of the contaminant source, models must be formulated to prevent "back-dispersion." Second, large variations in aquifer permeability will result in differences between volume-weighted average concentration (resident concentration) and flow-weighted average concentration (flux concentration). Water samples taken from wells may be regarded as flux concentrations, while soil samples may be analyzed to determine resident concentrations. While the mADE is usually derived in terms of resident concentration, it is known that a mADE of the same mathematical form may be written in terms of flux concentration. However, when solving the latter, the mathematical transformation of a flux boundary condition applied to the resident mADE becomes a concentration type boundary condition for the flux mADE. Initial conditions must also be consistent with the form of the mADE that is to be solved. Thus, careful attention must be given to the type of concentration data that is available, whether resident or flux concentrations are to be simulated, and to boundary and initial conditions. We present 3-D analytical solutions for resident and flux concentrations, discuss methods of solving numerical models to obtain resident and flux concentrations, and compare results for hypothetical problems. We also present an upscaling method for computing "effective" dispersivities and other mADE model parameters in terms of physically meaningful parameters in a diffusion-limited mobile-immobile model. Application of the latter to previously published studies of

  4. NATURAL GRADIENT EXPERIMENT ON SOLUTE TRANSPORT IN A SAND AQUIFER. 2. SPATIAL MOMENTS AND THE ADVECTION AND DISPERSION OF NONREACTIVE TRACERS

    EPA Science Inventory

    The three-dimensional movement of a tracer plume containing bromide and chloride is investigated using the data base from a large-scale natural gradient field experiment on groundwater solute transport. The analysis focuses on the zeroth-, first-, and second-order spatial moments...

  5. The China Clipper - Fast advective transport of radon-rich air from the Asian boundary layer to the upper troposphere near California

    NASA Technical Reports Server (NTRS)

    Kritz, Mark A.; Le Roulley, Jean-Claude; Danielsen, Edwin F.

    1990-01-01

    A series of upper tropospheric radon concentration measurements made over the eastern Pacific and west coast of the U.S. during the summers of 1983 and 1984 has revealed the occurrence of unexpectedly high radon concentrations for 9 of the 61 measurements. A frequency distribution plot of the set of 61 observations shows a distinct bimodal distribution, with approximately 2/5 of the observations falling close to 1 pCi/SCM, and 3/5 falling in a high concentration mode centered at about 11 pCi/SCM. Trajectory and synoptic analyses for two of the flights on which such high radon concentrations were observed indicate that this radon-rich air originated in the Asian boundary layer, ascended in cumulus updrafts, and was carried eastward in the fast moving air on the anticyclonic side of the upper tropospheric jet. The results suggest that the combination of rapid vertical transport from the surface boundary layer to the upper troposphere, followed by rapid horizontal transport eastward represents an efficient mode of long-transport for other, chemically reactive atmospheric trace constituents.

  6. Advection and diffusion in shoreline change prediction

    NASA Astrophysics Data System (ADS)

    Anderson, T. R.; Frazer, L. N.

    2010-12-01

    We added longshore advection and diffusion to the simple cross-shore rate calculation method, as used widely by the USGS and others, to model historic shorelines and to predict future shoreline positions; and applied this to Hawaiian Island beach data. Aerial photographs, sporadically taken throughout the past century, yield usable, albeit limited, historic shoreline data. These photographs provide excellent spatial coverage, but poor temporal resolution, of the shoreline. Due to the sparse historic shoreline data, and the many natural and anthropogenic events influencing coastlines, we constructed a simplistic shoreline change model that can identify long-term behavior of a beach. Our new, two-dimensional model combines the simple rate method to accommodate for cross-shore sediment transport with the classic Pelnard-Considère model for diffusion, as well as a longshore advection speed term. Inverse methods identify cross-shore rate, longshore advection speed, and longshore diffusivity down a sandy coastline. A spatial averaging technique then identifies shoreline segments where one parameter can reasonably account for the cross-shore and longshore transport rates in that area. This produces model results with spatial resolution more appropriate to the temporal spacing of the data. Because changes in historic data can be accounted for by varying degrees of cross-shore and longshore sediment transport - for example, beach erosion can equally be explained by sand moving either off-shore or laterally - we tested several different model scenarios on the data: allowing only cross-shore sediment movement, only longshore movement, and a combination of the two. We used statistical information criteria to determine both the optimal spatial resolution and best-fitting scenario. Finally, we employed a voting method predicting the relaxed shoreline position over time.

  7. Algorithm for Public Electric Transport Schedule Control for Intelligent Embedded Devices

    NASA Astrophysics Data System (ADS)

    Alps, Ivars; Potapov, Andrey; Gorobetz, Mikhail; Levchenkov, Anatoly

    2010-01-01

    In this paper authors present heuristics algorithm for precise schedule fulfilment in city traffic conditions taking in account traffic lights. The algorithm is proposed for programmable controller. PLC is proposed to be installed in electric vehicle to control its motion speed and signals of traffic lights. Algorithm is tested using real controller connected to virtual devices and real functional models of real tram devices. Results of experiments show high precision of public transport schedule fulfilment using proposed algorithm.

  8. An amoeboid algorithm for solving linear transportation problem

    NASA Astrophysics Data System (ADS)

    Gao, Cai; Yan, Chao; Zhang, Zili; Hu, Yong; Mahadevan, Sankaran; Deng, Yong

    2014-03-01

    Transportation Problem (TP) is one of the basic operational research problems, which plays an important role in many practical applications. In this paper, a bio-inspired mathematical model is proposed to handle the Linear Transportation Problem (LTP) in directed networks by modifying the original amoeba model Physarum Solver. Several examples are used to prove that the provided model can effectively solve Balanced Transportation Problem (BTP), Unbalanced Transportation Problem (UTP), especially the Generalized Transportation Problem (GTP), in a nondiscrete way.

  9. Concentration polarization, surface currents, and bulk advection in a microchannel

    NASA Astrophysics Data System (ADS)

    Nielsen, Christoffer P.; Bruus, Henrik

    2014-10-01

    We present a comprehensive analysis of salt transport and overlimiting currents in a microchannel during concentration polarization. We have carried out full numerical simulations of the coupled Poisson-Nernst-Planck-Stokes problem governing the transport and rationalized the behavior of the system. A remarkable outcome of the investigations is the discovery of strong couplings between bulk advection and the surface current; without a surface current, bulk advection is strongly suppressed. The numerical simulations are supplemented by analytical models valid in the long channel limit as well as in the limit of negligible surface charge. By including the effects of diffusion and advection in the diffuse part of the electric double layers, we extend a recently published analytical model of overlimiting current due to surface conduction.

  10. BUOYANT ADVECTION OF GASES IN UNSATURATED SOIL

    PubMed Central

    Seely, Gregory E.; Falta, Ronald W.; Hunt, James R.

    2010-01-01

    In unsaturated soil, methane and volatile organic compounds can significantly alter the density of soil gas and induce buoyant gas flow. A series of laboratory experiments was conducted in a two-dimensional, homogeneous sand pack with gas permeabilities ranging from 110 to 3,000 darcy. Pure methane gas was injected horizontally into the sand and steady-state methane profiles were measured. Experimental results are in close agreement with a numerical model that represents the advective and diffusive components of methane transport. Comparison of simulations with and without gravitational acceleration permits identification of conditions where buoyancy dominates methane transport. Significant buoyant flow requires a Rayleigh number greater than 10 and an injected gas velocity sufficient to overcome dilution by molecular diffusion near the source. These criteria allow the extension of laboratory results to idealized field conditions for methane as well as denser-than-air vapors produced by volatilizing nonaqueous phase liquids trapped in unsaturated soil. PMID:20396624

  11. Advective Mechanisms in Tree Island Formation

    NASA Astrophysics Data System (ADS)

    Stothoff, S.

    2002-05-01

    Tree islands are important landscape features in the Florida Everglades. Tres islands are formed of peat deposited on the shallow limestone bedrock, and have been stressed as the system has changed in response to anthropogenic activities due to the sensitivity of organic soils to hydrologic cycles. The plume shape aligned with flow direction for typical tree islands is characteristic of advective transport, despite the rather low flow velocities in the system. Hypothesized mechanisms for the plume shape include sediment transport downstream from the head of the island (often anchored by a bedrock rise), or nutrient transport downstream allowing plants to produce more sediments in situ. Understanding mechanisms controlling tree island shape will aid in understanding the response of tree islands to hydrologic management. An integrated system of field, laboratory, and modeling studies is underway, with the first effort aimed at bounding the importance of the simpler sediment transport processes before tackling more-complex nutrient transport processes. The numerical model integrating the field and laboratory efforts is a 3D finite volume model considering water flow in the shallow groundwater/surface-water system together with sediment transport. The model can account for variable vegetative resistance through the flow column, including the important case where a dense mat forms at the surface. Model components specific for this system and associated data requirements are presented.

  12. Algorithm research and realization of the turning control system for heavy transportation vehicle

    NASA Astrophysics Data System (ADS)

    Mi, Hanguang; Yuan, Haiwen; Wang, Qiusheng; Zhao, Jingpo

    2012-05-01

    The dynamics of turning system which is a nonlinear system normally has great impact on the transportation speed of the vehicle having heavy load and large size. The dynamics of turning system depends on control algorithm and its implementation, but the existing control algorithms which having high dynamics in the application of heavy transportation vehicle are complex for realization and high hardware requirement. So, the nonlinear turning system is analyzed for improving its dynamics by researching new efficient control algorithm. The models of electromagnetic valve, hydraulic cylinder and turning mechanical part are built individually to get the open-loop model of the turning system following characteristics analyzed. According to the model, a new control algorithm for heavy transportation vehicle which combined PID with Bang-Bang control is presented. Then the close-loop model of turning system is obtained under Matlab/Simulink environment. By comparing the step response of different control algorithms in the same conditions, the new algorithm's validity is verified. On the basis of the analysis results, the algorithm is adopted to implement the turning control system by using CAN field bus and PLC controllers. Furthermore, the turning control system has been applied in one type of heavy transportation vehicle. It reduces the response time of turning system from seconds level to 250 ms, and the speed of heavy transportation vehicle increases from 5 km/h to 30 km/h. The application result shows that the algorithm and turning control system have met all the turning requirements. This new type of turning control algorithm proposed is simple in implementation for fast response of nonlinear and large-scale turning system of heavy transportation vehicle.

  13. Consistency problem with tracer advection in the Atmospheric Model GAMIL

    NASA Astrophysics Data System (ADS)

    Zhang, Kai; Wan, Hui; Wang, Bin; Zhang, Meigen

    2008-03-01

    The radon transport test, which is a widely used test case for atmospheric transport models, is carried out to evaluate the tracer advection schemes in the Grid-Point Atmospheric Model of IAP-LASG (GAMIL). Two of the three available schemes in the model are found to be associated with significant biases in the polar regions and in the upper part of the atmosphere, which implies potentially large errors in the simulation of ozone-like tracers. Theoretical analyses show that inconsistency exists between the advection schemes and the discrete continuity equation in the dynamical core of GAMIL and consequently leads to spurious sources and sinks in the tracer transport equation. The impact of this type of inconsistency is demonstrated by idealized tests and identified as the cause of the aforementioned biases. Other potential effects of this inconsistency are also discussed. Results of this study provide some hints for choosing suitable advection schemes in the GAMIL model. At least for the polar-region-concentrated atmospheric components and the closely correlated chemical species, the Flux-Form Semi-Lagrangian advection scheme produces more reasonable simulations of the large-scale transport processes without significantly increasing the computational expense.

  14. ADVECTION INFLUENCES ON EVAPOTRANSPIRATION OF ALFALFA IN A SEMIARID ENVIRONMENT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Advective enhancement of crop evapotranspiration (ET) occurs when drier, hotter air is transported into the crop by wind and can be an important factor in the water balance of irrigated crops in a semiarid climate. Thirteen days of moderate to extremely high ET rates of irrigated alfalfa (Medicago ...

  15. EBS Radionuclide Transport Abstraction

    SciTech Connect

    J. Prouty

    2006-07-14

    The purpose of this report is to develop and analyze the engineered barrier system (EBS) radionuclide transport abstraction model, consistent with Level I and Level II model validation, as identified in Technical Work Plan for: Near-Field Environment and Transport: Engineered Barrier System: Radionuclide Transport Abstraction Model Report Integration (BSC 2005 [DIRS 173617]). The EBS radionuclide transport abstraction (or EBS RT Abstraction) is the conceptual model used in the total system performance assessment (TSPA) to determine the rate of radionuclide releases from the EBS to the unsaturated zone (UZ). The EBS RT Abstraction conceptual model consists of two main components: a flow model and a transport model. Both models are developed mathematically from first principles in order to show explicitly what assumptions, simplifications, and approximations are incorporated into the models used in the TSPA. The flow model defines the pathways for water flow in the EBS and specifies how the flow rate is computed in each pathway. Input to this model includes the seepage flux into a drift. The seepage flux is potentially split by the drip shield, with some (or all) of the flux being diverted by the drip shield and some passing through breaches in the drip shield that might result from corrosion or seismic damage. The flux through drip shield breaches is potentially split by the waste package, with some (or all) of the flux being diverted by the waste package and some passing through waste package breaches that might result from corrosion or seismic damage. Neither the drip shield nor the waste package survives an igneous intrusion, so the flux splitting submodel is not used in the igneous scenario class. The flow model is validated in an independent model validation technical review. The drip shield and waste package flux splitting algorithms are developed and validated using experimental data. The transport model considers advective transport and diffusive transport

  16. Spectral approximation to advection-diffusion problems by the fictitious interface method

    NASA Astrophysics Data System (ADS)

    Frati, A.; Pasquarelli, F.; Quarteroni, A.

    1993-08-01

    The algorithmic aspects of the 'fictitious interface' method used in numerical approximations of convection-dominated flows are discussed. The solution algorithm presented alternates the advection-equation solution with that of the advection-diffusion equation within complementary subdomains. For the problems presently considered, spatial discretization is obtained by the spectral collocation method via Legendre-Gaussian modes. Attention is given to the the fictitious interface method's application to the Burgers equation.

  17. Advection, diffusion, and delivery over a network

    NASA Astrophysics Data System (ADS)

    Heaton, Luke L. M.; López, Eduardo; Maini, Philip K.; Fricker, Mark D.; Jones, Nick S.

    2012-08-01

    Many biological, geophysical, and technological systems involve the transport of a resource over a network. In this paper, we present an efficient method for calculating the exact quantity of the resource in each part of an arbitrary network, where the resource is lost or delivered out of the network at a given rate, while being subject to advection and diffusion. The key conceptual step is to partition the resource into material that does or does not reach a node over a given time step. As an example application, we consider resource allocation within fungal networks, and analyze the spatial distribution of the resource that emerges as such networks grow over time. Fungal growth involves the expansion of fluid filled vessels, and such growth necessarily involves the movement of fluid. We develop a model of delivery in growing fungal networks, and find good empirical agreement between our model and experimental data gathered using radio-labeled tracers. Our results lead us to suggest that in foraging fungi, growth-induced mass flow is sufficient to account for long-distance transport, if the system is well insulated. We conclude that active transport mechanisms may only be required at the very end of the transport pathway, near the growing tips.

  18. Algorithm for resistance to flow and transport in sand-bed channels

    USGS Publications Warehouse

    Bennett, J.P.

    1995-01-01

    An algorithm is developed that relates depth to discharge and determines bed- and suspended-load transport for the entire range of bed forms found in sand-bed channels; equilibrium-state geometry of lower flow regime bedforms is also predicted. A Meyer-Peter-type formulation is used to compute sand transport in the bed-load layer and for computing suspended sand transport, McLean's procedure is adopted. A bed-form classifcation scheme is developed. The algorithm produces overall geometric averages of predicted to observed depth and predicted to observed transport of 1.00. For a verification data set of 855 observations, mostly from rivers and canals, the overall geometric averages of predicted to observed depth and transport are 0.87 and 1.14. -from Author

  19. Transport path optimization algorithm based on fuzzy integrated weights

    NASA Astrophysics Data System (ADS)

    Hou, Yuan-Da; Xu, Xiao-Hao

    2014-11-01

    Natural disasters cause significant damage to roads, making route selection a complicated logistical problem. To overcome this complexity, we present a method of using a trapezoidal fuzzy number to select the optimal transport path. Using the given trapezoidal fuzzy edge coefficients, we calculate a fuzzy integrated matrix, and incorporate the fuzzy multi-weights into fuzzy integrated weights. The optimal path is determined by taking two sets of vertices and transforming undiscovered vertices into discoverable ones. Our experimental results show that the model is highly accurate, and requires only a few measurement data to confirm the optimal path. The model provides an effective, feasible, and convenient method to obtain weights for different road sections, and can be applied to road planning in intelligent transportation systems.

  20. Identification of Transport Parameters and Pollution Sources for a Physically Based Groundwater Contaminant Transport Model: A Comparison of Algorithms

    NASA Astrophysics Data System (ADS)

    Yin, Y.; Sykes, J. F.

    2006-12-01

    Transport parameter estimation and contaminant source identification are critical steps in the development of a physically based groundwater contaminant transport model. For most transient field scale problems, the high computational burden required by parameter identification algorithms combined with sparse data sets often limits calibration. However, when data are available, a high performance computing system and parallel computing may make the calibration process feasible. The selection of the optimization algorithm is also critical. In this paper, the contaminant transport and source parameters were estimated and compared using optimization with two heuristic search algorithms (a dynamically dimensioned search and a parallelized micro genetic algorithm) and a gradient based multi-start PEST algorithm which were implemented on the Shared Hierarchical Academic Research Computing Network (Sharcnet). The case study is located in New Jersey where improper waste disposal resulted in the contamination of down gradient public water supply wells. Using FRAC3DVS, a physically based transient three-dimensional groundwater flow model with spatially and temporally varying recharge was developed and calibrated using both approximately 9 years of head data from continuous well records and data over a period of approximately 30 years from traditional monitoring wells. For the contaminant system, the parameters that were estimated include source leaching rate, source concentration, dispersivities, and retardation coefficient. The groundwater domain was discretized using 214,520 elements. With highly changing pump rates at the 7 municipal wells, time increments over the approximately 30 year simulation period varied dynamically between several days and 3 months. On Sharcnet, one forward simulation on a single processor of both transient flow and contaminant transport takes approximately 3 to 4 hours. The contaminant transport model calibration results indicate that overall

  1. Analysis of Massively Parallel Discrete-Ordinates Transport Sweep Algorithms with Collisions

    SciTech Connect

    Bailey, T S; Falgout, R D

    2008-10-14

    We present theoretical scaling models for a variety of discrete-ordinates sweep algorithms. In these models, we pay particular attention to the way each algorithm handles collisions. A collision is defined as a processor having multiple angles with ready to be swept during one stage of the sweep. The models also take into account how subdomains are assigned to processors and how angles are grouped during the sweep. We describe a data driven algorithm that resolves collisions efficiently during the sweep as well as other algorithms that have been designed to avoid collisions completely. Our models are validated using the ARGES and AMTRAN transport codes. We then use the models to study and predict scaling trends in all of the sweep algorithms.

  2. An Algorithm for the Transport of Anisotropic Neutrons

    NASA Technical Reports Server (NTRS)

    Tweed, J.

    2005-01-01

    One major obstacle to human space exploration is the possible limitations imposed by the adverse effect of long-term exposure to the space environment. Even before human spaceflight began, the potentially brief exposure of astronauts to the very intense random solar particle events (SPE) were of great concern. A new challenge appears in deep space exploration from exposure to the low-intensity heavy-ion flux of the galactic cosmic rays (GCR) since the missions are of long duration and the accumulated GCR exposures can be high. Because cancer induction rates increase behind low to rather large thicknesses of aluminum shielding, according to available biological data on mammalian exposures to GCR like ions, the shield requirements for a Mars mission are prohibitively expensive in terms of mission launch costs. Therefore, a critical issue in the Human Exploration and Development of Space enterprise is cost effective mitigation of risk associated with ionizing radiation exposure. In order to estimate astronaut risk to GCR exposure and associated cancer risks and health hazards, it is necessary to do shield material studies. To determine an optimum radiation shield material it is necessary to understand nuclear interaction processes such as fragmentation and secondary particle production which is a function of energy dependent cross sections. This requires knowledge of material transmission characteristics either through laboratory testing or improved theoretical modeling. Here ion beam transport theory is of importance in that testing of materials in the laboratory environment generated by particle accelerators is a necessary step in materials development and evaluation for space use. The approximations used in solving the Boltzmann transport equation for the space setting are often not sufficient for laboratory work and those issues are a major emphasis of the present work.

  3. AN EULERIAN-LAGRANGIAN LOCALIZED ADJOINT METHOD FOR THE ADVECTION-DIFFUSION EQUATION

    EPA Science Inventory

    Many numerical methods use characteristic analysis to accommodate the advective component of transport. Such characteristic methods include Eulerian-Lagrangian methods (ELM), modified method of characteristics (MMOC), and operator splitting methods. A generalization of characteri...

  4. EULERIAN-LAGRANGIAN LOCALIZED ADJOINT METHOD FOR THE ADVECTION-DIFFUSION EQUATION

    EPA Science Inventory

    Many numerical methods use characteristic analysis to accommodate the advective component of transport. uch characteristic methods include Eulerian-Lagrangian methods (ELM), modified method of characteristics (MMOC), and operator splitting methods. eneralization of characteristic...

  5. Algorithm and data support of traffic congestion forecasting in the controlled transport

    NASA Astrophysics Data System (ADS)

    Dmitriev, S. V.

    2015-06-01

    The topicality of problem of the traffic congestion forecasting in the logistic systems of product movement highways is considered. The concepts: the controlled territory, the highway occupancy by vehicles, the parking and the controlled territory are introduced. Technical realizabilityof organizing the necessary flow of information on the state of the transport system for its regulation has been marked. Sequence of practical implementation of the solution is given. An algorithm for predicting traffic congestion in the controlled transport system is suggested.

  6. Development and Implementation of a Transport Method for the Transport and Reaction Simulation Engine (TaRSE) based on the Godunov-Mixed Finite Element Method

    USGS Publications Warehouse

    James, Andrew I.; Jawitz, James W.; Munoz-Carpena, Rafael

    2009-01-01

    A model to simulate transport of materials in surface water and ground water has been developed to numerically approximate solutions to the advection-dispersion equation. This model, known as the Transport and Reaction Simulation Engine (TaRSE), uses an algorithm that incorporates a time-splitting technique where the advective part of the equation is solved separately from the dispersive part. An explicit finite-volume Godunov method is used to approximate the advective part, while a mixed-finite element technique is used to approximate the dispersive part. The dispersive part uses an implicit discretization, which allows it to run stably with a larger time step than the explicit advective step. The potential exists to develop algorithms that run several advective steps, and then one dispersive step that encompasses the time interval of the advective steps. Because the dispersive step is computationally most expensive, schemes can be implemented that are more computationally efficient than non-time-split algorithms. This technique enables scientists to solve problems with high grid Peclet numbers, such as transport problems with sharp solute fronts, without spurious oscillations in the numerical approximation to the solution and with virtually no artificial diffusion.

  7. Visualizing Vector Fields Using Line Integral Convolution and Dye Advection

    NASA Technical Reports Server (NTRS)

    Shen, Han-Wei; Johnson, Christopher R.; Ma, Kwan-Liu

    1996-01-01

    We present local and global techniques to visualize three-dimensional vector field data. Using the Line Integral Convolution (LIC) method to image the global vector field, our new algorithm allows the user to introduce colored 'dye' into the vector field to highlight local flow features. A fast algorithm is proposed that quickly recomputes the dyed LIC images. In addition, we introduce volume rendering methods that can map the LIC texture on any contour surface and/or translucent region defined by additional scalar quantities, and can follow the advection of colored dye throughout the volume.

  8. Parallel algorithms for 2-D cylindrical transport equations of Eigenvalue problem

    SciTech Connect

    Wei, J.; Yang, S.

    2013-07-01

    In this paper, aimed at the neutron transport equations of eigenvalue problem under 2-D cylindrical geometry on unstructured grid, the discrete scheme of Sn discrete ordinate and discontinuous finite is built, and the parallel computation for the scheme is realized on MPI systems. Numerical experiments indicate that the designed parallel algorithm can reach perfect speedup, it has good practicality and scalability. (authors)

  9. Combinatorial theory of the semiclassical evaluation of transport moments II: Algorithmic approach for moment generating functions

    SciTech Connect

    Berkolaiko, G.; Kuipers, J.

    2013-12-15

    Electronic transport through chaotic quantum dots exhibits universal behaviour which can be understood through the semiclassical approximation. Within the approximation, calculation of transport moments reduces to codifying classical correlations between scattering trajectories. These can be represented as ribbon graphs and we develop an algorithmic combinatorial method to generate all such graphs with a given genus. This provides an expansion of the linear transport moments for systems both with and without time reversal symmetry. The computational implementation is then able to progress several orders further than previous semiclassical formulae as well as those derived from an asymptotic expansion of random matrix results. The patterns observed also suggest a general form for the higher orders.

  10. An asymptotic-preserving Lagrangian algorithm for the time-dependent anisotropic heat transport equation

    SciTech Connect

    Chacon, Luis; del-Castillo-Negrete, Diego; Hauck, Cory D.

    2014-09-01

    We propose a Lagrangian numerical algorithm for a time-dependent, anisotropic temperature transport equation in magnetized plasmas in the large guide field regime. The approach is based on an analytical integral formal solution of the parallel (i.e., along the magnetic field) transport equation with sources, and it is able to accommodate both local and non-local parallel heat flux closures. The numerical implementation is based on an operator-split formulation, with two straightforward steps: a perpendicular transport step (including sources), and a Lagrangian (field-line integral) parallel transport step. Algorithmically, the first step is amenable to the use of modern iterative methods, while the second step has a fixed cost per degree of freedom (and is therefore scalable). Accuracy-wise, the approach is free from the numerical pollution introduced by the discrete parallel transport term when the perpendicular to parallel transport coefficient ratio X /X becomes arbitrarily small, and is shown to capture the correct limiting solution when ε = X⊥L2/X1L2 → 0 (with L∥∙ L⊥ , the parallel and perpendicular diffusion length scales, respectively). Therefore, the approach is asymptotic-preserving. We demonstrate the capabilities of the scheme with several numerical experiments with varying magnetic field complexity in two dimensions, including the case of transport across a magnetic island.

  11. Sensitivity of CO2 Simulation in a GCM to the Convective Transport Algorithms

    NASA Technical Reports Server (NTRS)

    Zhu, Z.; Pawson, S.; Collatz, G. J.; Gregg, W. W.; Kawa, S. R.; Baker, D.; Ott, L.

    2014-01-01

    Convection plays an important role in the transport of heat, moisture and trace gases. In this study, we simulated CO2 concentrations with an atmospheric general circulation model (GCM). Three different convective transport algorithms were used. One is a modified Arakawa-Shubert scheme that was native to the GCM; two others used in two off-line chemical transport models (CTMs) were added to the GCM here for comparison purposes. Advanced CO2 surfaced fluxes were used for the simulations. The results were compared to a large quantity of CO2 observation data. We find that the simulation results are sensitive to the convective transport algorithms. Overall, the three simulations are quite realistic and similar to each other in the remote marine regions, but are significantly different in some land regions with strong fluxes such as Amazon and Siberia during the convection seasons. Large biases against CO2 measurements are found in these regions in the control run, which uses the original GCM. The simulation with the simple diffusive algorithm is better. The difference of the two simulations is related to the very different convective transport speed.

  12. The Design of Flux-Corrected Transport (FCT) Algorithms For Structured Grids

    NASA Astrophysics Data System (ADS)

    Zalesak, Steven T.

    A given flux-corrected transport (FCT) algorithm consists of three components: 1) a high order algorithm to which it reduces in smooth parts of the flow; 2) a low order algorithm to which it reduces in parts of the flow devoid of smoothness; and 3) a flux limiter which calculates the weights assigned to the high and low order fluxes in various regions of the flow field. One way of optimizing an FCT algorithm is to optimize each of these three components individually. We present some of the ideas that have been developed over the past 30 years toward this end. These include the use of very high order spatial operators in the design of the high order fluxes, non-clipping flux limiters, the appropriate choice of constraint variables in the critical flux-limiting step, and the implementation of a "failsafe" flux-limiting strategy.

  13. Anomalous diffusion of a tracer advected by wave turbulence

    NASA Astrophysics Data System (ADS)

    Balk, Alexander M.

    2001-02-01

    We consider the advection of a passive tracer when the velocity field is a superposition of random waves. Green's function for the turbulent transport (turbulent diffusion and turbulent drift) is derived. This Green's function is shown to imply sub-diffusive or super-diffusive behavior of the tracer. For the analysis we introduce the statistical near-identity transformation. The results are confirmed by numerical simulations.

  14. A Quasi-Conservative Adaptive Semi-Lagrangian Advection-Diffusion Scheme

    NASA Astrophysics Data System (ADS)

    Behrens, Joern

    2014-05-01

    Many processes in atmospheric or oceanic tracer transport are conveniently represented by advection-diffusion type equations. Depending on the magnitudes of both components, the mathematical representation and consequently the discretization is a non-trivial problem. We will focus on advection-dominated situations and will introduce a semi-Lagrangian scheme with adaptive mesh refinement for high local resolution. This scheme is well suited for pollutant transport from point sources, or transport processes featuring fine filamentation with corresponding local concentration maxima. In order to achieve stability, accuracy and conservation, we combine an adaptive mesh refinement quasi-conservative semi-Lagrangian scheme, based on an integral formulation of the underlying advective conservation law (Behrens, 2006), with an advection diffusion scheme as described by Spiegelman and Katz (2006). The resulting scheme proves to be conservative and stable, while maintaining high computational efficiency and accuracy.

  15. Lorentz force correction to the Boltzmann radiation transport equation and its implications for Monte Carlo algorithms

    NASA Astrophysics Data System (ADS)

    Bouchard, Hugo; Bielajew, Alex

    2015-07-01

    To establish a theoretical framework for generalizing Monte Carlo transport algorithms by adding external electromagnetic fields to the Boltzmann radiation transport equation in a rigorous and consistent fashion. Using first principles, the Boltzmann radiation transport equation is modified by adding a term describing the variation of the particle distribution due to the Lorentz force. The implications of this new equation are evaluated by investigating the validity of Fano’s theorem. Additionally, Lewis’ approach to multiple scattering theory in infinite homogeneous media is redefined to account for the presence of external electromagnetic fields. The equation is modified and yields a description consistent with the deterministic laws of motion as well as probabilistic methods of solution. The time-independent Boltzmann radiation transport equation is generalized to account for the electromagnetic forces in an additional operator similar to the interaction term. Fano’s and Lewis’ approaches are stated in this new equation. Fano’s theorem is found not to apply in the presence of electromagnetic fields. Lewis’ theory for electron multiple scattering and moments, accounting for the coupling between the Lorentz force and multiple elastic scattering, is found. However, further investigation is required to develop useful algorithms for Monte Carlo and deterministic transport methods. To test the accuracy of Monte Carlo transport algorithms in the presence of electromagnetic fields, the Fano cavity test, as currently defined, cannot be applied. Therefore, new tests must be designed for this specific application. A multiple scattering theory that accurately couples the Lorentz force with elastic scattering could improve Monte Carlo efficiency. The present study proposes a new theoretical framework to develop such algorithms.

  16. Lorentz force correction to the Boltzmann radiation transport equation and its implications for Monte Carlo algorithms.

    PubMed

    Bouchard, Hugo; Bielajew, Alex

    2015-07-01

    To establish a theoretical framework for generalizing Monte Carlo transport algorithms by adding external electromagnetic fields to the Boltzmann radiation transport equation in a rigorous and consistent fashion. Using first principles, the Boltzmann radiation transport equation is modified by adding a term describing the variation of the particle distribution due to the Lorentz force. The implications of this new equation are evaluated by investigating the validity of Fano's theorem. Additionally, Lewis' approach to multiple scattering theory in infinite homogeneous media is redefined to account for the presence of external electromagnetic fields. The equation is modified and yields a description consistent with the deterministic laws of motion as well as probabilistic methods of solution. The time-independent Boltzmann radiation transport equation is generalized to account for the electromagnetic forces in an additional operator similar to the interaction term. Fano's and Lewis' approaches are stated in this new equation. Fano's theorem is found not to apply in the presence of electromagnetic fields. Lewis' theory for electron multiple scattering and moments, accounting for the coupling between the Lorentz force and multiple elastic scattering, is found. However, further investigation is required to develop useful algorithms for Monte Carlo and deterministic transport methods. To test the accuracy of Monte Carlo transport algorithms in the presence of electromagnetic fields, the Fano cavity test, as currently defined, cannot be applied. Therefore, new tests must be designed for this specific application. A multiple scattering theory that accurately couples the Lorentz force with elastic scattering could improve Monte Carlo efficiency. The present study proposes a new theoretical framework to develop such algorithms. PMID:26061045

  17. The design of flux-corrected transport (FCT) algorithms on structured grids

    NASA Astrophysics Data System (ADS)

    Zalesak, Steven T.

    2005-12-01

    A given flux-corrected transport (FCT) algorithm consists of three components: (1) a high order algorithm to which it reduces in smooth parts of the flow field; (2) a low order algorithm to which it reduces in parts of the flow devoid of smoothness; and (3) a flux limiter which calculates the weights assigned to the high and low order algorithms, in flux form, in the various regions of the flow field. In this dissertation, we describe a set of design principles that significantly enhance the accuracy and robustness of FCT algorithms by enhancing the accuracy and robustness of each of the three components individually. These principles include the use of very high order spatial operators in the design of the high order fluxes, the use of non-clipping flux limiters, the appropriate choice of constraint variables in the critical flux-limiting step, and the implementation of a "failsafe" flux-limiting strategy. We show via standard test problems the kind of algorithm performance one can expect if these design principles are adhered to. We give examples of applications of these design principles in several areas of physics. Finally, we compare the performance of these enhanced algorithms with that of other recent front-capturing methods.

  18. A new algorithm for generating highly accurate benchmark solutions to transport test problems

    SciTech Connect

    Azmy, Y.Y.

    1997-06-01

    We present a new algorithm for solving the neutron transport equation in its discrete-variable form. The new algorithm is based on computing the full matrix relating the scalar flux spatial moments in all cells to the fixed neutron source spatial moments, foregoing the need to compute the angular flux spatial moments, and thereby eliminating the need for sweeping the spatial mesh in each discrete-angular direction. The matrix equation is solved exactly in test cases, producing a solution vector that is free from iteration convergence error, and subject only to truncation and roundoff errors. Our algorithm is designed to provide method developers with a quick and simple solution scheme to test their new methods on difficult test problems without the need to develop sophisticated solution techniques, e.g. acceleration, before establishing the worthiness of their innovation. We demonstrate the utility of the new algorithm by applying it to the Arbitrarily High Order Transport Nodal (AHOT-N) method, and using it to solve two of Burre`s Suite of Test Problems (BSTP). Our results provide highly accurate benchmark solutions, that can be distributed electronically and used to verify the pointwise accuracy of other solution methods and algorithms.

  19. Efficient Algorithms for Modeling the Transport and Biodegradation of Chlorinated Ethenes in Groundwater

    NASA Astrophysics Data System (ADS)

    Cunningham, J. A.; Mendoza-Sanchez, I.

    2008-12-01

    Predicting the fate and transport of chlorinated ethenes in groundwater requires the solution of equations that describe both the transport and the biodegradation of the contaminants. In this poster, we present a model that accounts for (1) transport of chlorinated ethenes in flowing groundwater, (2) mass transfer of contaminants between mobile groundwater and stationary biofilms, and (3) diffusion and biodegradation within the biofilms. The equations for biodegradation kinetics are based on previous work by other researchers and account for biomass growth within the biofilms, the effect of hydrogen on dechlorination, and competitive inhibition between vinyl chloride and cis-dichloroethene. Therefore, the overall model consists of coupled, non-linear, partial differential equations; solution of such a model is challenging and requires innovative numerical algorithms. We developed and tested two new numerical algorithms to solve the equations in the model; one is called system splitting with operator splitting (SSOS), and the other is called system splitting with Picard iteration (SSPI). Comparison of the two algorithms shows that the SSPI method is computationally more efficient under most conditions tested, but under some conditions the Picard iteration does not converge rapidly and the SSOS is superior. The model presented here can be used to explore phenomena that depend on the interaction between macro-scale and biofilm-scale phenomena, e.g., to identify how diffusion limitations or metabolism limitations affect macroscopic contaminant fate and transport.

  20. The Moment Condensed History Algorithm for Monte Carlo Electron Transport Simulations

    SciTech Connect

    Tolar, D R; Larsen, E W

    2001-02-27

    We introduce a new Condensed History algorithm for the Monte Carlo simulation of electron transport. To obtain more accurate simulations, the new algorithm preserves the mean position and the variance in the mean position exactly for electrons that have traveled a given path length and are traveling in a given direction. This is accomplished by deriving the zeroth-, first-, and second-order spatial moments of the Spencer-Lewis equation and employing this information directly in the Condensed History process. Numerical calculations demonstrate the advantages of our method over standard Condensed History methods.

  1. Transport implementation of the Bernstein–Vazirani algorithm with ion qubits

    NASA Astrophysics Data System (ADS)

    Fallek, S. D.; Herold, C. D.; McMahon, B. J.; Maller, K. M.; Brown, K. R.; Amini, J. M.

    2016-08-01

    Using trapped ion quantum bits in a scalable microfabricated surface trap, we perform the Bernstein–Vazirani algorithm. Our architecture takes advantage of the ion transport capabilities of such a trap. The algorithm is demonstrated using two- and three-ion chains. For three ions, an improvement is achieved compared to a classical system using the same number of oracle queries. For two ions and one query, we correctly determine an unknown bit string with probability 97.6(8)%. For three ions, we succeed with probability 80.9(3)%.

  2. Lattice Boltzmann method for the fractional advection-diffusion equation

    NASA Astrophysics Data System (ADS)

    Zhou, J. G.; Haygarth, P. M.; Withers, P. J. A.; Macleod, C. J. A.; Falloon, P. D.; Beven, K. J.; Ockenden, M. C.; Forber, K. J.; Hollaway, M. J.; Evans, R.; Collins, A. L.; Hiscock, K. M.; Wearing, C.; Kahana, R.; Villamizar Velez, M. L.

    2016-04-01

    Mass transport, such as movement of phosphorus in soils and solutes in rivers, is a natural phenomenon and its study plays an important role in science and engineering. It is found that there are numerous practical diffusion phenomena that do not obey the classical advection-diffusion equation (ADE). Such diffusion is called abnormal or superdiffusion, and it is well described using a fractional advection-diffusion equation (FADE). The FADE finds a wide range of applications in various areas with great potential for studying complex mass transport in real hydrological systems. However, solution to the FADE is difficult, and the existing numerical methods are complicated and inefficient. In this study, a fresh lattice Boltzmann method is developed for solving the fractional advection-diffusion equation (LabFADE). The FADE is transformed into an equation similar to an advection-diffusion equation and solved using the lattice Boltzmann method. The LabFADE has all the advantages of the conventional lattice Boltzmann method and avoids a complex solution procedure, unlike other existing numerical methods. The method has been validated through simulations of several benchmark tests: a point-source diffusion, a boundary-value problem of steady diffusion, and an initial-boundary-value problem of unsteady diffusion with the coexistence of source and sink terms. In addition, by including the effects of the skewness β , the fractional order α , and the single relaxation time τ , the accuracy and convergence of the method have been assessed. The numerical predictions are compared with the analytical solutions, and they indicate that the method is second-order accurate. The method presented will allow the FADE to be more widely applied to complex mass transport problems in science and engineering.

  3. Lattice Boltzmann method for the fractional advection-diffusion equation.

    PubMed

    Zhou, J G; Haygarth, P M; Withers, P J A; Macleod, C J A; Falloon, P D; Beven, K J; Ockenden, M C; Forber, K J; Hollaway, M J; Evans, R; Collins, A L; Hiscock, K M; Wearing, C; Kahana, R; Villamizar Velez, M L

    2016-04-01

    Mass transport, such as movement of phosphorus in soils and solutes in rivers, is a natural phenomenon and its study plays an important role in science and engineering. It is found that there are numerous practical diffusion phenomena that do not obey the classical advection-diffusion equation (ADE). Such diffusion is called abnormal or superdiffusion, and it is well described using a fractional advection-diffusion equation (FADE). The FADE finds a wide range of applications in various areas with great potential for studying complex mass transport in real hydrological systems. However, solution to the FADE is difficult, and the existing numerical methods are complicated and inefficient. In this study, a fresh lattice Boltzmann method is developed for solving the fractional advection-diffusion equation (LabFADE). The FADE is transformed into an equation similar to an advection-diffusion equation and solved using the lattice Boltzmann method. The LabFADE has all the advantages of the conventional lattice Boltzmann method and avoids a complex solution procedure, unlike other existing numerical methods. The method has been validated through simulations of several benchmark tests: a point-source diffusion, a boundary-value problem of steady diffusion, and an initial-boundary-value problem of unsteady diffusion with the coexistence of source and sink terms. In addition, by including the effects of the skewness β, the fractional order α, and the single relaxation time τ, the accuracy and convergence of the method have been assessed. The numerical predictions are compared with the analytical solutions, and they indicate that the method is second-order accurate. The method presented will allow the FADE to be more widely applied to complex mass transport problems in science and engineering. PMID:27176431

  4. Hydraulic and solute-transport properties and simulated advective transport of contaminated ground water in a fractured rock aquifer at the Naval Air Warfare Center, West Trenton, New Jersey, 2003

    USGS Publications Warehouse

    Lewis-Brown, Jean C.; Carleton, Glen B.; Imbrigiotta, Thomas E.

    2006-01-01

    Volatile organic compounds, predominantly trichloroethylene and its degradation products, have been detected in ground water at the Naval Air Warfare Center (NAWC), West Trenton, New Jersey. An air-stripping pump-and-treat system has been in operation at the NAWC since 1998. An existing ground-water-flow model was used to evaluate the effect of a change in the configuration of the network of recovery wells in the pump-and-treat system on flow paths of contaminated ground water. The NAWC is underlain by a fractured-rock aquifer composed of dipping layers of sedimentary rocks of the Lockatong and Stockton Formations. Hydraulic and solute-transport properties of the part of the aquifer composed of the Lockatong Formation were measured using aquifer tests and tracer tests. The heterogeneity of the rocks causes a wide range of values of each parameter measured. Transmissivity ranges from 95 to 1,300 feet squared per day; the storage coefficient ranges from 9 x 10-5 to 5 x 10-3; and the effective porosity ranges from 0.0003 to 0.002. The average linear velocity of contaminated ground water was determined for ambient conditions (when no wells at the site are pumped) using an existing ground-water-flow model, particle-tracking techniques, and the porosity values determined in this study. The average linear velocity of flow paths beginning at each contaminated well and ending at the streams where the flow paths terminate ranges from 0.08 to 130 feet per day. As a result of a change in the pump-and-treat system (adding a 165-foot-deep well pumped at 5 gallons per minute and reducing the pumping rate at a nearby 41-foot-deep well by the same amount), water in the vicinity of three 100- to 165-foot-deep wells flows to the deep well rather than the shallower well.

  5. The Design of Flux-Corrected Transport (FCT) Algorithms for Structured Grids

    NASA Astrophysics Data System (ADS)

    Zalesak, Steven T.

    A given flux-corrected transport (FCT) algorithm consists of three components: (1) a high order algorithm to which it reduces in smooth parts of the flow; (2) a low order algorithm to which it reduces in parts of the flow devoid of smoothness; and (3) a flux limiter which calculates the weights assigned to the high and low order fluxes in various regions of the flow field. One way of optimizing an FCT algorithm is to optimize each of these three components individually. We present some of the ideas that have been developed over the past 30 years toward this end. These include the use of very high order spatial operators in the design of the high order fluxes, non-clipping flux limiters, the appropriate choice of constraint variables in the critical flux-limiting step, and the implementation of a "failsafe" flux-limiting strategy. This chapter confines itself to the design of FCT algorithms for structured grids, using a finite volume formalism, for this is the area with which the present author is most familiar. The reader will find excellent material on the design of FCT algorithms for unstructured grids, using both finite volume and finite element formalisms, in the chapters by Professors Löhner, Baum, Kuzmin, Turek, and Möller in the present volume.

  6. A Conservative Galerkin-Characteristics Algorithm Combined with a Relaxation Scheme for Two Regions Nonlinear Solute Transport Problem in Porous Media

    SciTech Connect

    Mahmood, Mohammed Shuker

    2007-12-26

    Numerical scheme based on the modified method of characteristics with adjusted advection combined with a relaxation scheme for solving strongly nonlinear degenerate convection diffusion problem which arises in the contaminant transport in porous media with dual porosity. A series of computational experiments and comparisons with other solutions are carried out to illustrate the rate of convergence, the behavior and the capability of the scheme.

  7. Parallel Algorithms for Monte Carlo Particle Transport Simulation on Exascale Computing Architectures

    NASA Astrophysics Data System (ADS)

    Romano, Paul Kollath

    Monte Carlo particle transport methods are being considered as a viable option for high-fidelity simulation of nuclear reactors. While Monte Carlo methods offer several potential advantages over deterministic methods, there are a number of algorithmic shortcomings that would prevent their immediate adoption for full-core analyses. In this thesis, algorithms are proposed both to ameliorate the degradation in parallel efficiency typically observed for large numbers of processors and to offer a means of decomposing large tally data that will be needed for reactor analysis. A nearest-neighbor fission bank algorithm was proposed and subsequently implemented in the OpenMC Monte Carlo code. A theoretical analysis of the communication pattern shows that the expected cost is O( N ) whereas traditional fission bank algorithms are O(N) at best. The algorithm was tested on two supercomputers, the Intrepid Blue Gene/P and the Titan Cray XK7, and demonstrated nearly linear parallel scaling up to 163,840 processor cores on a full-core benchmark problem. An algorithm for reducing network communication arising from tally reduction was analyzed and implemented in OpenMC. The proposed algorithm groups only particle histories on a single processor into batches for tally purposes---in doing so it prevents all network communication for tallies until the very end of the simulation. The algorithm was tested, again on a full-core benchmark, and shown to reduce network communication substantially. A model was developed to predict the impact of load imbalances on the performance of domain decomposed simulations. The analysis demonstrated that load imbalances in domain decomposed simulations arise from two distinct phenomena: non-uniform particle densities and non-uniform spatial leakage. The dominant performance penalty for domain decomposition was shown to come from these physical effects rather than insufficient network bandwidth or high latency. The model predictions were verified with

  8. Chaotic advection in blood flow.

    PubMed

    Schelin, A B; Károlyi, Gy; de Moura, A P S; Booth, N A; Grebogi, C

    2009-07-01

    In this paper we argue that the effects of irregular chaotic motion of particles transported by blood can play a major role in the development of serious circulatory diseases. Vessel wall irregularities modify the flow field, changing in a nontrivial way the transport and activation of biochemically active particles. We argue that blood particle transport is often chaotic in realistic physiological conditions. We also argue that this chaotic behavior of the flow has crucial consequences for the dynamics of important processes in the blood, such as the activation of platelets which are involved in the thrombus formation. PMID:19658798

  9. Radiation transport calculations on unstructured grids using a spatially decomposed and threaded algorithm

    SciTech Connect

    Nemanic, M K; Nowak, P

    1999-04-12

    We consider the solution of time-dependent, energy-dependent, discrete ordinates, and nonlinear radiative transfer problems on three-dimensional unstructured spatial grids. We discuss the solution of this class of transport problems, using the code TETON, on large distributed-memory multinode computers having multiple processors per ''node'' (e.g. the IBM-SP). We discuss the use of both spatial decomposition using message passing between ''nodes'' and a threading algorithm in angle on each ''node''. We present timing studies to show how this algorithm scales to hundreds and thousands of processors. We also present an energy group ''batching'' algorithm that greatly enhances cache performance. Our conclusion, after considering cache performance, storage limitations and dependencies inherent in the physics, is that a model that uses a combination of message-passing and threading is superior to one that uses message-passing alone. We present numerical evidence to support our conclusion.

  10. Transportation network with fluctuating input/output designed by the bio-inspired Physarum algorithm.

    PubMed

    Watanabe, Shin; Takamatsu, Atsuko

    2014-01-01

    In this paper, we propose designing transportation network topology and traffic distribution under fluctuating conditions using a bio-inspired algorithm. The algorithm is inspired by the adaptive behavior observed in an amoeba-like organism, plasmodial slime mold, more formally known as plasmodium of Physarum plycephalum. This organism forms a transportation network to distribute its protoplasm, the fluidic contents of its cell, throughout its large cell body. In this process, the diameter of the transportation tubes adapts to the flux of the protoplasm. The Physarum algorithm, which mimics this adaptive behavior, has been widely applied to complex problems, such as maze solving and designing the topology of railroad grids, under static conditions. However, in most situations, environmental conditions fluctuate; for example, in power grids, the consumption of electric power shows daily, weekly, and annual periodicity depending on the lifestyles or the business needs of the individual consumers. This paper studies the design of network topology and traffic distribution with oscillatory input and output traffic flows. The network topology proposed by the Physarum algorithm is controlled by a parameter of the adaptation process of the tubes. We observe various rich topologies such as complete mesh, partial mesh, Y-shaped, and V-shaped networks depending on this adaptation parameter and evaluate them on the basis of three performance functions: loss, cost, and vulnerability. Our results indicate that consideration of the oscillatory conditions and the phase-lags in the multiple outputs of the network is important: The building and/or maintenance cost of the network can be reduced by introducing the oscillating condition, and when the phase-lag among the outputs is large, the transportation loss can also be reduced. We use stability analysis to reveal how the system exhibits various topologies depending on the parameter. PMID:24586616

  11. Understanding Air Transportation Market Dynamics Using a Search Algorithm for Calibrating Travel Demand and Price

    NASA Technical Reports Server (NTRS)

    Kumar, Vivek; Horio, Brant M.; DeCicco, Anthony H.; Hasan, Shahab; Stouffer, Virginia L.; Smith, Jeremy C.; Guerreiro, Nelson M.

    2015-01-01

    This paper presents a search algorithm based framework to calibrate origin-destination (O-D) market specific airline ticket demands and prices for the Air Transportation System (ATS). This framework is used for calibrating an agent based model of the air ticket buy-sell process - Airline Evolutionary Simulation (Airline EVOS) -that has fidelity of detail that accounts for airline and consumer behaviors and the interdependencies they share between themselves and the NAS. More specificially, this algorithm simultaneous calibrates demand and airfares for each O-D market, to within specified threshold of a pre-specified target value. The proposed algorithm is illustrated with market data targets provided by the Transportation System Analysis Model (TSAM) and Airline Origin and Destination Survey (DB1B). Although we specify these models and datasources for this calibration exercise, the methods described in this paper are applicable to calibrating any low-level model of the ATS to some other demand forecast model-based data. We argue that using a calibration algorithm such as the one we present here to synchronize ATS models with specialized forecast demand models, is a powerful tool for establishing credible baseline conditions in experiments analyzing the effects of proposed policy changes to the ATS.

  12. Parallel Implementation and Scaling of an Adaptive Mesh Discrete Ordinates Algorithm for Transport

    SciTech Connect

    Howell, L H

    2004-11-29

    Block-structured adaptive mesh refinement (AMR) uses a mesh structure built up out of locally-uniform rectangular grids. In the BoxLib parallel framework used by the Raptor code, each processor operates on one or more of these grids at each refinement level. The decomposition of the mesh into grids and the distribution of these grids among processors may change every few timesteps as a calculation proceeds. Finer grids use smaller timesteps than coarser grids, requiring additional work to keep the system synchronized and ensure conservation between different refinement levels. In a paper for NECDC 2002 I presented preliminary results on implementation of parallel transport sweeps on the AMR mesh, conjugate gradient acceleration, accuracy of the AMR solution, and scalar speedup of the AMR algorithm compared to a uniform fully-refined mesh. This paper continues with a more in-depth examination of the parallel scaling properties of the scheme, both in single-level and multi-level calculations. Both sweeping and setup costs are considered. The algorithm scales with acceptable performance to several hundred processors. Trends suggest, however, that this is the limit for efficient calculations with traditional transport sweeps, and that modifications to the sweep algorithm will be increasingly needed as job sizes in the thousands of processors become common.

  13. Super-diffusion versus competitive advection: a simulation

    NASA Astrophysics Data System (ADS)

    Del Moro, D.; Giannattasio, F.; Berrilli, F.; Consolini, G.; Lepreti, F.; Gošić, M.

    2015-04-01

    Context. Magnetic element tracking is often used to study the transport and diffusion of the magnetic field on the solar photosphere. From the analysis of the displacement spectrum of these tracers, it has recently been agreed that a regime of super-diffusivity dominates the solar surface. Quite habitually this result is discussed in the framework of fully developed turbulence. Aims: However, the debate whether the super-diffusivity is generated by a turbulent dispersion process, by the advection due to the convective pattern, or even by another process is still open, as is the question of the amount of diffusivity at the scales relevant to the local dynamo process. Methods: To understand how such peculiar diffusion in the solar atmosphere takes place, we compared the results from two different data sets (ground-based and space-borne) and developed a simulation of passive tracers advection by the deformation of a Voronoi network. Results: The displacement spectra of the magnetic elements obtained by the data sets are consistent in retrieving a super-diffusive regime for the solar photosphere, but the simulation also shows a super-diffusive displacement spectrum: its competitive advection process can reproduce the signature of super-diffusion. Conclusions: Therefore, it is not necessary to hypothesize a totally developed turbulence regime to explain the motion of the magnetic elements on the solar surface.

  14. Laser speckle contrast imaging is sensitive to advective flux

    NASA Astrophysics Data System (ADS)

    Khaksari, Kosar; Kirkpatrick, Sean J.

    2016-07-01

    Unlike laser Doppler flowmetry, there has yet to be presented a clear description of the physical variables that laser speckle contrast imaging (LSCI) is sensitive to. Herein, we present a theoretical basis for demonstrating that LSCI is sensitive to total flux and, in particular, the summation of diffusive flux and advective flux. We view LSCI from the perspective of mass transport and briefly derive the diffusion with drift equation in terms of an LSCI experiment. This equation reveals the relative sensitivity of LSCI to both diffusive flux and advective flux and, thereby, to both concentration and the ordered velocity of the scattering particles. We demonstrate this dependence through a short series of flow experiments that yield relationships between the calculated speckle contrast and the concentration of the scatterers (manifesting as changes in scattering coefficient), between speckle contrast and the velocity of the scattering fluid, and ultimately between speckle contrast and advective flux. Finally, we argue that the diffusion with drift equation can be used to support both Lorentzian and Gaussian correlation models that relate observed contrast to the movement of the scattering particles and that a weighted linear combination of these two models is likely the most appropriate model for relating speckle contrast to particle motion.

  15. Optimization of air monitoring networks using chemical transport model and search algorithm

    NASA Astrophysics Data System (ADS)

    Araki, Shin; Iwahashi, Koki; Shimadera, Hikari; Yamamoto, Kouhei; Kondo, Akira

    2015-12-01

    Air monitoring network design is a critical issue because monitoring stations should be allocated properly so that they adequately represent the concentrations in the domain of interest. Although the optimization methods using observations from existing monitoring networks are often applied to a network with a considerable number of stations, they are difficult to be applied to a sparse network or a network under development: there are too few observations to define an optimization criterion and the high number of potential monitor location combinations cannot be tested exhaustively. This paper develops a hybrid of genetic algorithm and simulated annealing to combine their power to search a big space and to find local optima. The hybrid algorithm as well as the two single algorithms are applied to optimize an air monitoring network of PM2.5, NO2 and O3 respectively, by minimization of the mean kriging variance derived from simulated values of a chemical transport model instead of observations. The hybrid algorithm performs best among the algorithms: kriging variance is on average about 4% better than for GA and variability between trials is less than 30% compared to SA. The optimized networks for the three pollutants are similar and maps interpolated from the simulated values at these locations are close to the original simulations (RMSE below 9% relative to the range of the field). This also holds for hourly and daily values although the networks are optimized for annual values. It is demonstrated that the method using the hybrid algorithm and the model simulated values for the calculation of the mean kriging variance is of benefit to the optimization of air monitoring networks.

  16. An Improved Elastic and Nonelastic Neutron Transport Algorithm for Space Radiation

    NASA Technical Reports Server (NTRS)

    Clowdsley, Martha S.; Wilson, John W.; Heinbockel, John H.; Tripathi, R. K.; Singleterry, Robert C., Jr.; Shinn, Judy L.

    2000-01-01

    A neutron transport algorithm including both elastic and nonelastic particle interaction processes for use in space radiation protection for arbitrary shield material is developed. The algorithm is based upon a multiple energy grouping and analysis of the straight-ahead Boltzmann equation by using a mean value theorem for integrals. The algorithm is then coupled to the Langley HZETRN code through a bidirectional neutron evaporation source term. Evaluation of the neutron fluence generated by the solar particle event of February 23, 1956, for an aluminum water shield-target configuration is then compared with MCNPX and LAHET Monte Carlo calculations for the same shield-target configuration. With the Monte Carlo calculation as a benchmark, the algorithm developed in this paper showed a great improvement in results over the unmodified HZETRN solution. In addition, a high-energy bidirectional neutron source based on a formula by Ranft showed even further improvement of the fluence results over previous results near the front of the water target where diffusion out the front surface is important. Effects of improved interaction cross sections are modest compared with the addition of the high-energy bidirectional source terms.

  17. The contiguous domains of Arctic Ocean advection: Trails of life and death

    NASA Astrophysics Data System (ADS)

    Wassmann, P.; Kosobokova, K. N.; Slagstad, D.; Drinkwater, K. F.; Hopcroft, R. R.; Moore, S. E.; Ellingsen, I.; Nelson, R. J.; Carmack, E.; Popova, E.; Berge, J.

    2015-12-01

    The central Arctic Ocean is not isolated, but tightly connected to the northern Pacific and Atlantic Oceans. Advection of nutrient-, detritus- and plankton-rich waters into the Arctic Ocean forms lengthy contiguous domains that connect subarctic with the arctic biota, supporting both primary production and higher trophic level consumers. In turn, the Arctic influences the physical, chemical and biological oceanography of adjacent subarctic waters through southward fluxes. However, exports of biomass out of the Arctic Ocean into both the Pacific and Atlantic Oceans are thought to be far smaller than the northward influx. Thus, Arctic Ocean ecosystems are net biomass beneficiaries through advection. The biotic impact of Atlantic- and Pacific-origin taxa in arctic waters depends on the total supply of allochthonously-produced biomass, their ability to survive as adults and their (unsuccessful) reproduction in the new environment. Thus, advective transport can be thought of as trails of life and death in the Arctic Ocean. Through direct and indirect (mammal stomachs, models) observations this overview presents information about the advection and fate of zooplankton in the Arctic Ocean, now and in the future. The main zooplankton organisms subjected to advection into and inside the Arctic Ocean are (a) oceanic expatriates of boreal Atlantic and Pacific origin, (b) oceanic Arctic residents and (c) neritic Arctic expatriates. As compared to the Pacific gateway the advective supply of zooplankton biomass through the Atlantic gateways is 2-3 times higher. Advection characterises how the main planktonic organisms interact along the contiguous domains and shows how the subarctic production regimes fuel life in the Arctic Ocean. The main differences in the advective regimes through the Pacific and Atlantic gateways are presented. The Arctic Ocean is, at least in some regions, a net heterotrophic ocean that - during the foreseeable global warming trend - will more and more rely

  18. Distinguishing resuspension and advection signals in a hypertidal estuary

    NASA Astrophysics Data System (ADS)

    Todd, David; Souza, Alex; Jago, Colin

    2015-04-01

    Terrestrial material is supplied to an estuary system by the river, while marine material is supplied by the sea. Whether the estuary acts as a trap or a bypass zone for SPM (suspended particulate matter) depends upon the properties and dynamics of both the estuary, including the tidal and residual behaviour of the currents, and the SPM, including particle sizes and settling velocities and concentration gradients, which together control the dynamics, such as the trapping efficiency, of the estuary. Whether an SPM signal is regarded as being one of resuspension or advection depends upon the area of interest, and therefore distinguishing between resuspension and advection can be complex. Material that is resuspended within the area of study is regarded as resuspension, while that which is resuspended outside, but passes through, the area of interest, is regarded as advection. The results of a measurement campaign undertaken in a hypertidal UK estuary during the pre-spring bloom February-March and post-spring bloom May-June are presented utilising a combination of acoustic and optical instruments, moorings, and CTD stations. A characteristic asymmetric "twin peak" signal is present during both time periods, implying the presence of both resuspension and advection. This is confirmed through the use of harmonic analysis. A seasonal variation in the relative importance of the resuspension and advection components is seen between the two observation periods, with the small (<122µm) and large (>122µm) particles displaying different behaviours and providing a strong indication of the presence of flocculation. Approximate point flux calculations showed a reduction in the horizontal gradient of concentration, and subsequently the flood dominance of sediment transport, between May-June and February-March. This has been attributed to changes in biological activity and atmospheric forcing between the two observational periods. Ebb-dominant concentrations brought about by the

  19. Iterative feedback algorithm for phase retrieval based on transport of intensity equation

    NASA Astrophysics Data System (ADS)

    Liu, Kaifeng; Cheng, Hong; Zhang, Cheng; Shen, Chuan; Zhang, Fen; Wei, Sui

    2015-12-01

    In this paper, a novel phase retrieval algorithm is presented which combines the advantages of the Transport of Intensity Equation (TIE) method and the iteration method. TIE method is fast, but its precision is not high. Though the convergence rate of iteration method is slow, its result is more accurate. This algorithm consists of Iterative Angular Spectrum (IAS) method to utilize the physical constraints between the object and the spectral domain, and the relationship between the intensity and phase among the wave propagation. Firstly, the phase at the object plane is calculated from two intensity images by TIE. Then this result is treated as the initial phase of the IAS. Finally, the phase information at the object plane is acquired according the reversibility of the optical path. During the iteration process, the feedback mechanism is imposed on it that improve the convergence rate and the precision of phase retrieval and the simulation results are given.

  20. Deduction of emissions of source gases using an objective inversion algorithm and a chemical transport model

    NASA Technical Reports Server (NTRS)

    Brown, Margaret

    1993-01-01

    An inversion algorithm, constructed to deduce the emissions of a source gas required to produce a specified surface concentration, is applied to the observed surface concentrations of CFC 11, methylchloroform, and methane, using a two-dimensional chemical transport model. The information utilized for this deduction process is limited to the measured atmospheric concentration of the source gas, including the associated standard deviations of these measurements. In this way the amount of objective information available in these measurements is assessed. The algorithm is shown to be capable of producing a latitudinal emissions distribution as well as the error bounds on the deduced emission distribution. The 'ill posed' nature of this inverse problem is discussed as well as the implications this has on the spatial and temporal resolution at which emissions can be resolved. Finally, a methane emission distribution is deduced which has the expected seasonal variations and consistent with results from other, more subjective, deduction studies.

  1. Surfzone alongshore advective accelerations: observations and modeling

    NASA Astrophysics Data System (ADS)

    Hansen, J.; Raubenheimer, B.; Elgar, S.

    2014-12-01

    The sources, magnitudes, and impacts of non-linear advective accelerations on alongshore surfzone currents are investigated with observations and a numerical model. Previous numerical modeling results have indicated that advective accelerations are an important contribution to the alongshore force balance, and are required to understand spatial variations in alongshore currents (which may result in spatially variable morphological change). However, most prior observational studies have neglected advective accelerations in the alongshore force balance. Using a numerical model (Delft3D) to predict optimal sensor locations, a dense array of 26 colocated current meters and pressure sensors was deployed between the shoreline and 3-m water depth over a 200 by 115 m region near Duck, NC in fall 2013. The array included 7 cross- and 3 alongshore transects. Here, observational and numerical estimates of the dominant forcing terms in the alongshore balance (pressure and radiation-stress gradients) and the advective acceleration terms will be compared with each other. In addition, the numerical model will be used to examine the force balance, including sources of velocity gradients, at a higher spatial resolution than possible with the instrument array. Preliminary numerical results indicate that at O(10-100 m) alongshore scales, bathymetric variations and the ensuing alongshore variations in the wave field and subsequent forcing are the dominant sources of the modeled velocity gradients and advective accelerations. Additional simulations and analysis of the observations will be presented. Funded by NSF and ASDR&E.

  2. Vertical transportation systems embedded on shuffled frog leaping algorithm for manufacturing optimisation problems in industries.

    PubMed

    Aungkulanon, Pasura; Luangpaiboon, Pongchanun

    2016-01-01

    Response surface methods via the first or second order models are important in manufacturing processes. This study, however, proposes different structured mechanisms of the vertical transportation systems or VTS embedded on a shuffled frog leaping-based approach. There are three VTS scenarios, a motion reaching a normal operating velocity, and both reaching and not reaching transitional motion. These variants were performed to simultaneously inspect multiple responses affected by machining parameters in multi-pass turning processes. The numerical results of two machining optimisation problems demonstrated the high performance measures of the proposed methods, when compared to other optimisation algorithms for an actual deep cut design. PMID:27386280

  3. Update on Advection-Diffusion Purge Flow Model

    NASA Technical Reports Server (NTRS)

    Brieda, Lubos

    2015-01-01

    Gaseous purge is commonly used in sensitive spacecraft optical or electronic instruments to prevent infiltration of contaminants and/or water vapor. Typically, purge is sized using simplistic zero-dimensional models that do not take into account instrument geometry, surface effects, and the dependence of diffusive flux on the concentration gradient. For this reason, an axisymmetric computational fluid dynamics (CFD) simulation was recently developed to model contaminant infiltration and removal by purge. The solver uses a combined Navier-Stokes and Advection-Diffusion approach. In this talk, we report on updates in the model, namely inclusion of a particulate transport model.

  4. Subsurface barrier design alternatives for confinement and controlled advection flow

    SciTech Connect

    Phillips, S.J.; Stewart, W.E.; Alexander, R.G.; Cantrell, K.J.; McLaughlin, T.J.

    1994-02-01

    Various technologies and designs are being considered to serve as subsurface barriers to confine or control contaminant migration from underground waste storage or disposal structures containing radioactive and hazardous wastes. Alternatives including direct-coupled flood and controlled advection designs are described as preconceptual examples. Prototype geotechnical equipment for testing and demonstration of these alternative designs tested at the Hanford Geotechnical Development and Test Facility and the Hanford Small-Tube Lysimeter Facility include mobile high-pressure injectors and pumps, mobile transport and pumping units, vibratory and impact pile drivers, and mobile batching systems. Preliminary laboratory testing of barrier materials and additive sequestering agents have been completed and are described.

  5. Global restructuring of the CPM-2 transport algorithm for vector and parallel processing

    SciTech Connect

    Vujic, J.L.; Martin, W.R. )

    1989-11-01

    The CPM-2 code is an assembly transport code based on the collision probability (CP) method. It can in principle be applied to global reactor problems, but its excessive computational demands prevent this application. Therefore, a new transport algorithm for CPM-2 has been developed for vector-parallel architectures, which has resulted in an overall factor of 20 speedup (wall clock) on the IBM 3090-600E. This paper presents the detailed results of this effort as well as a brief description of ongoing effort to remove some of the modeling limitations in CPM-2 that inhibit its use for global applications, such as the use of the pure CP treatment and the assumption of isotropic scattering.

  6. Chaotic advection in 2D anisotropic porous media

    NASA Astrophysics Data System (ADS)

    Varghese, Stephen; Speetjens, Michel; Trieling, Ruben; Toschi, Federico

    2015-11-01

    Traditional methods for heat recovery from underground geothermal reservoirs employ a static system of injector-producer wells. Recent studies in literature have shown that using a well-devised pumping scheme, through actuation of multiple injector-producer wells, can dramatically enhance production rates due to the increased scalar / heat transport by means of chaotic advection. However the effect of reservoir anisotropy on kinematic mixing and heat transport is unknown and has to be incorporated and studied for practical deployment in the field. As a first step, we numerically investigate the effect of anisotropy (both magnitude and direction) on (chaotic) advection of passive tracers in a time-periodic Darcy flow within a 2D circular domain driven by periodically reoriented diametrically opposite source-sink pairs. Preliminary results indicate that anisotropy has a significant impact on the location, shape and size of coherent structures in the Poincare sections. This implies that the optimal operating parameters (well spacing, time period of well actuation) may vary strongly and must be carefully chosen so as to enhance subsurface transport. This work is part of the research program of the Foundation for Fundamental Research on Matter (FOM), which is part of Netherlands Organisation for Scientific Research (NWO). This research program is co-financed by Shell Global Solutions International B.V.

  7. Advection fog formation in a polluted atmosphere

    SciTech Connect

    Hung, R.J.; Liaw, G.S.

    1981-01-01

    Large quantities of atmospheric aerosols with composition SO/sub 4//sup 2 -/, NO/sub 3//sup -/ and NH/sub 4//sup +/ have been detected in highly industrialized areas. The major portions of aerosol products are the results of energy related fuel combustion. Both microphysical and macrophysical processes are considered in investigating the time dependent evolution of the saturation spectra of condensation nuclei associated with both polluted and clean atmospheres during the time periods of advection fog formation. The results show that the condensation nuclei associated with a polluted atmosphere provide more favorable conditions than condensation nuclei associated with a clean atmosphere to produce dense advection fog, and that attaining a certain degree of supersaturation is not necessarily required for the formation of advection fog with condensation nuclei associated with a polluted atmosphere for monodisperse distribution.

  8. MAGNETIC ADVECTION DUE TO DIFFUSIVITY GRADIENTS

    NASA Astrophysics Data System (ADS)

    Zita, E. J.

    2009-12-01

    We derive and discuss an important source of advection of magnetic fields in plasmas, for a completely general case. Magnetic diffusivity is proportional to electrical resistivity: where the value this parameter is high, it is well known that magnetic fields can leak (or diffuse) rapidly into (or out) of the plasma. Magnetohydrodynamic lore has it that where gradients, or changes in space, of the value of the diffusivity are high, magnetic fields can have enhanced flow (or advection). We derive this phenomenon rigorously, compare our results to other work in the literature, and discuss its implications, especially for kinematic dynamos. As an extra mathematical bonus, we find that the magnetic advection due to diffusivity gradients can be expressed in terms of a diffusion equation within the induction equation, making its computational implementation especially simple.

  9. Simulation of Long Lived Tracers Using an Improved Empirically Based Two-Dimensional Model Transport Algorithm

    NASA Technical Reports Server (NTRS)

    Fleming, E. L.; Jackman, C. H.; Stolarski, R. S.; Considine, D. B.

    1998-01-01

    We have developed a new empirically-based transport algorithm for use in our GSFC two-dimensional transport and chemistry model. The new algorithm contains planetary wave statistics, and parameterizations to account for the effects due to gravity waves and equatorial Kelvin waves. As such, this scheme utilizes significantly more information compared to our previous algorithm which was based only on zonal mean temperatures and heating rates. The new model transport captures much of the qualitative structure and seasonal variability observed in long lived tracers, such as: isolation of the tropics and the southern hemisphere winter polar vortex; the well mixed surf-zone region of the winter sub-tropics and mid-latitudes; the latitudinal and seasonal variations of total ozone; and the seasonal variations of mesospheric H2O. The model also indicates a double peaked structure in methane associated with the semiannual oscillation in the tropical upper stratosphere. This feature is similar in phase but is significantly weaker in amplitude compared to the observations. The model simulations of carbon-14 and strontium-90 are in good agreement with observations, both in simulating the peak in mixing ratio at 20-25 km, and the decrease with altitude in mixing ratio above 25 km. We also find mostly good agreement between modeled and observed age of air determined from SF6 outside of the northern hemisphere polar vortex. However, observations inside the vortex reveal significantly older air compared to the model. This is consistent with the model deficiencies in simulating CH4 in the northern hemisphere winter high latitudes and illustrates the limitations of the current climatological zonal mean model formulation. The propagation of seasonal signals in water vapor and CO2 in the lower stratosphere showed general agreement in phase, and the model qualitatively captured the observed amplitude decrease in CO2 from the tropics to midlatitudes. However, the simulated seasonal

  10. Particle Communication and Domain Neighbor Coupling: Scalable Domain Decomposed Algorithms for Monte Carlo Particle Transport

    SciTech Connect

    O'Brien, M. J.; Brantley, P. S.

    2015-01-20

    In order to run Monte Carlo particle transport calculations on new supercomputers with hundreds of thousands or millions of processors, care must be taken to implement scalable algorithms. This means that the algorithms must continue to perform well as the processor count increases. In this paper, we examine the scalability of:(1) globally resolving the particle locations on the correct processor, (2) deciding that particle streaming communication has finished, and (3) efficiently coupling neighbor domains together with different replication levels. We have run domain decomposed Monte Carlo particle transport on up to 221 = 2,097,152 MPI processes on the IBM BG/Q Sequoia supercomputer and observed scalable results that agree with our theoretical predictions. These calculations were carefully constructed to have the same amount of work on every processor, i.e. the calculation is already load balanced. We also examine load imbalanced calculations where each domain’s replication level is proportional to its particle workload. In this case we show how to efficiently couple together adjacent domains to maintain within workgroup load balance and minimize memory usage.

  11. Effect of dissolved organic carbon on the transport and attachment behaviors of Cryptosporidium parvum oocysts and carboxylate-modified microspheres advected through temperate humic and tropical volcanic agricultural soil.

    PubMed

    Mohanram, Arvind; Ray, Chittaranjan; Metge, David W; Barber, Larry B; Ryan, Joseph N; Harvey, Ronald W

    2012-02-21

    Transport of Cryptosporidium parvum oocysts and microspheres in two disparate (a clay- and Fe-rich, volcanic and a temperate, humic) agricultural soils were studied in the presence and absence of 100 mg L(-1) of sodium dodecyl benzene sulfonate (SDBS), and Suwannee River Humic Acid (SRHA) at pH 5.0-6.0. Transport of carboxylate-modified, 1.8 μm microspheres in soil columns was highly sensitive to the nature of the dissolved organic carbon (DOC), whereas oocysts transport was more affected by soil mineralogy. SDBS increased transport of microspheres from 48% to 87% through the tropical soil and from 43% to 93% in temperate soil. In contrast, SRHA reduced transport of microspheres from 48% to 28% in tropical soil and from 43% to 16% in temperate soil. SDBS also increased oocysts transport through the temperate soil 5-fold, whereas no oocyst transport was detected in tropical soil. SRHA had only a nominal effect in increasing oocysts transport in tropical soil, but caused a 6-fold increase in transport through the temperate soil. Amendments of only 4 mg L(-1) SRHA and SDBS decreased oocyst hydrophobicity from 66% to 20% and from 66% to 5%, respectively. However, SDBS increased microsphere hydrophobicity from 16% to 33%. Soil fines, which includes clays, and SRHA, both caused the oocysts zeta potential (ζ) to become more negative, but caused the highly hydrophilic microspheres to become less negatively charged. The disparate behaviors of the two colloids in the presence of an ionic surfactant and natural organic matter suggest that microspheres may not be suitable surrogates for oocysts in certain types of soils. These results indicate that whether or not DOC inhibits or promotes transport of oocysts and microspheres in agricultural soils and by how much, depends not only on the surface characteristics of the colloid, but the nature of the DOC and the soil mineralogy. PMID:21711011

  12. 3D Flow Visualization Using Texture Advection

    NASA Technical Reports Server (NTRS)

    Kao, David; Zhang, Bing; Kim, Kwansik; Pang, Alex; Moran, Pat (Technical Monitor)

    2001-01-01

    Texture advection is an effective tool for animating and investigating 2D flows. In this paper, we discuss how this technique can be extended to 3D flows. In particular, we examine the use of 3D and 4D textures on 3D synthetic and computational fluid dynamics flow fields.

  13. How Hydrate Saturation Anomalies are Diffusively Constructed and Advectively Smoothed

    NASA Astrophysics Data System (ADS)

    Rempel, A. W.; Irizarry, J. T.; VanderBeek, B. P.; Handwerger, A. L.

    2015-12-01

    The physical processes that control the bulk characteristics of hydrate reservoirs are captured reasonably well by long-established model formulations that are rooted in laboratory-verified phase equilibrium parameterizations and field-based estimates of in situ conditions. More detailed assessments of hydrate distribution, especially involving the occurrence of high-saturation hydrate anomalies have been more difficult to obtain. Spatial variations in sediment properties are of central importance for modifying the phase behavior and promoting focussed fluid flow. However, quantitative predictions of hydrate anomaly development cannot be made rigorously without also addressing the changes in phase behavior and mechanical balances that accompany changes in hydrate saturation level. We demonstrate how pore-scale geometrical controls on hydrate phase stability can be parameterized for incorporation in simulations of hydrate anomaly development along dipping coarse-grained layers embedded in a more fine-grained background that is less amenable to fluid transport. Model simulations demonstrate how hydrate anomaly growth along coarse-layer boundaries is promoted by diffusive gas transport from the adjacent fine-grained matrix, while advective transport favors more distributed growth within the coarse-grained material and so effectively limits the difference between saturation peaks and background levels. Further analysis demonstrates how sediment contacts are unloaded once hydrate saturation reaches sufficient levels to form a load-bearing skeleton that can evolve to produce segregated nodules and lenses. Decomposition of such growth forms poses a significant geohazard that is expected to be particularly sensitive to perturbations induced by gas extraction. The figure illustrates the predicted evolution of hydrate saturation Sh in a coarse-grained dipping layer showing how prominent bounding hydrate anomalies (spikes) supplied by diffusive gas transport at early times

  14. An advanced algorithm for construction of Integral Transport Matrix Method operators using accumulation of single cell coupling factors

    SciTech Connect

    Powell, B. P.; Azmy, Y. Y.

    2013-07-01

    The Integral Transport Matrix Method (ITMM) has been shown to be an effective method for solving the neutron transport equation in large domains on massively parallel architectures. In the limit of very large number of processors, the speed of the algorithm, and its suitability for unstructured meshes, i.e. other than an ordered Cartesian grid, is limited by the construction of four matrix operators required for obtaining the solution in each sub-domain. The existing algorithm used for construction of these matrix operators, termed the differential mesh sweep, is computationally expensive and was developed for a structured grid. This work proposes the use of a new algorithm for construction of these operators based on the construction of a single, fundamental matrix representing the transport of a particle along every possible path throughout the sub-domain mesh. Each of the operators is constructed by multiplying an element of this fundamental matrix by two factors dependent only upon the operator being constructed and on properties of the emitting and incident cells. The ITMM matrix operator construction time for the new algorithm is demonstrated to be shorter than the existing algorithm in all tested cases with both isotropic and anisotropic scattering considered. While also being a more efficient algorithm on a structured Cartesian grid, the new algorithm is promising in its geometric robustness and potential for being applied to an unstructured mesh, with the ultimate goal of application to an unstructured tetrahedral mesh on a massively parallel architecture. (authors)

  15. Advection of methane in the hydrate zone: model, analysis and examples

    NASA Astrophysics Data System (ADS)

    Peszynska, Malgorzata; Showalter, Ralph E.; Webster, Justin T.

    2015-12-01

    A two-phase two-component model is formulated for the advective-diffusive transport of methane in liquid phase through sediment with the accompanying formation and dissolution of methane hydrate. This free-boundary problem has a unique generalized solution in $L^1$; the proof combines analysis of the stationary semilinear elliptic Dirichlet problem with the nonlinear semigroup theory in Banach space for an m-accretive multi-valued operator. Additional estimates of maximum principle type are obtained, and these permit appropriate maximal extensions of the phase-change relations. An example with pure advection indicates the limitations of these estimates and of the model developed here. We also consider and analyze the coupled pressure equation that determines the advective flux in the transport model.

  16. Power law breakthrough curve tailing in a fracture: The role of advection

    NASA Astrophysics Data System (ADS)

    Fiori, Aldo; Becker, Matthew W.

    2015-06-01

    We offer an explanation of the strongly tailed solute breakthrough curve typically observed when a tracer test is conducted in fractured bedrock. In this example, we limit the model to a single planar fracture of varying aperture. Flow heterogeneity derives from variable fracture aperture, which implies variable transmissivity (T). The analysis employs a physically based model well-suited to strong heterogeneity and relies only upon advective transport. The purely advective model is able to explain a power-law trend of magnitude -2 to -3 in the breakthrough curve tail; a range that has been found in field tracer experiments. The principle cause of this trend is the comparatively slow transport in zones of small transmissivity (tight aperture). Slow advection occurs when either heterogeneity (variance of lnT) is strong or when the assumed heterogeneity distribution is non-Gaussian. Thus, we link breakthrough tailing to the statistical parameters for the transmissivity field.

  17. EBS Radionuclide Transport Abstraction

    SciTech Connect

    J.D. Schreiber

    2005-08-25

    The purpose of this report is to develop and analyze the engineered barrier system (EBS) radionuclide transport abstraction model, consistent with Level I and Level II model validation, as identified in ''Technical Work Plan for: Near-Field Environment and Transport: Engineered Barrier System: Radionuclide Transport Abstraction Model Report Integration'' (BSC 2005 [DIRS 173617]). The EBS radionuclide transport abstraction (or EBS RT Abstraction) is the conceptual model used in the total system performance assessment for the license application (TSPA-LA) to determine the rate of radionuclide releases from the EBS to the unsaturated zone (UZ). The EBS RT Abstraction conceptual model consists of two main components: a flow model and a transport model. Both models are developed mathematically from first principles in order to show explicitly what assumptions, simplifications, and approximations are incorporated into the models used in the TSPA-LA. The flow model defines the pathways for water flow in the EBS and specifies how the flow rate is computed in each pathway. Input to this model includes the seepage flux into a drift. The seepage flux is potentially split by the drip shield, with some (or all) of the flux being diverted by the drip shield and some passing through breaches in the drip shield that might result from corrosion or seismic damage. The flux through drip shield breaches is potentially split by the waste package, with some (or all) of the flux being diverted by the waste package and some passing through waste package breaches that might result from corrosion or seismic damage. Neither the drip shield nor the waste package survives an igneous intrusion, so the flux splitting submodel is not used in the igneous scenario class. The flow model is validated in an independent model validation technical review. The drip shield and waste package flux splitting algorithms are developed and validated using experimental data. The transport model considers

  18. Positivity-preserving numerical schemes for multidimensional advection

    NASA Technical Reports Server (NTRS)

    Leonard, B. P.; Macvean, M. K.; Lock, A. P.

    1993-01-01

    This report describes the construction of an explicit, single time-step, conservative, finite-volume method for multidimensional advective flow, based on a uniformly third-order polynomial interpolation algorithm (UTOPIA). Particular attention is paid to the problem of flow-to-grid angle-dependent, anisotropic distortion typical of one-dimensional schemes used component-wise. The third-order multidimensional scheme automatically includes certain cross-difference terms that guarantee good isotropy (and stability). However, above first-order, polynomial-based advection schemes do not preserve positivity (the multidimensional analogue of monotonicity). For this reason, a multidimensional generalization of the first author's universal flux-limiter is sought. This is a very challenging problem. A simple flux-limiter can be found; but this introduces strong anisotropic distortion. A more sophisticated technique, limiting part of the flux and then restoring the isotropy-maintaining cross-terms afterwards, gives more satisfactory results. Test cases are confined to two dimensions; three-dimensional extensions are briefly discussed.

  19. F--Ray: A new algorithm for efficient transport of ionizing radiation

    NASA Astrophysics Data System (ADS)

    Mao, Yi; Zhang, J.; Wandelt, B. D.; Shapiro, P. R.; Iliev, I. T.

    2014-04-01

    We present a new algorithm for the 3D transport of ionizing radiation, called F2-Ray (Fast Fourier Ray-tracing method). The transfer of ionizing radiation with long mean free path in diffuse intergalactic gas poses a special challenge to standard numerical methods which transport the radiation in position space. Standard methods usually trace each individual ray until it is fully absorbed by the intervening gas. If the mean free path is long, the computational cost and memory load are likely to be prohibitive. We have developed an algorithm that overcomes these limitations and is, therefore, significantly more efficient. The method calculates the transfer of radiation collectively, using the Fast Fourier Transform to convert radiation between position and Fourier spaces, so the computational cost will not increase with the number of ionizing sources. The method also automatically combines parallel rays with the same frequency at the same grid cell, thereby minimizing the memory requirement. The method is explicitly photon-conserving, i.e. the depletion of ionizing photons is guaranteed to equal the photoionizations they caused, and explicitly obeys the periodic boundary condition, i.e. the escape of ionizing photons from one side of a simulation volume is guaranteed to be compensated by emitting the same amount of photons into the volume through the opposite side. Together, these features make it possible to numerically simulate the transfer of ionizing photons more efficiently than previous methods. Since ionizing radiation such as the X-ray is responsible for heating the intergalactic gas when first stars and quasars form at high redshifts, our method can be applied to simulate thermal distribution, in addition to cosmic reionization, in three-dimensional inhomogeneous cosmological density field.

  20. Evolution of Advection Upstream Splitting Method Schemes

    NASA Technical Reports Server (NTRS)

    Liou, Meng-Sing

    2010-01-01

    This paper focuses on the evolution of advection upstream splitting method(AUSM) schemes. The main ingredients that have led to the development of modern computational fluid dynamics (CFD) methods have been reviewed, thus the ideas behind AUSM. First and foremost is the concept of upwinding. Second, the use of Riemann problem in constructing the numerical flux in the finite-volume setting. Third, the necessity of including all physical processes, as characterised by the linear (convection) and nonlinear (acoustic) fields. Fourth, the realisation of separating the flux into convection and pressure fluxes. The rest of this review briefly outlines the technical evolution of AUSM and more details can be found in the cited references. Keywords: Computational fluid dynamics methods, hyperbolic systems, advection upstream splitting method, conservation laws, upwinding, CFD

  1. Passive advection in a collisionless plasma

    NASA Astrophysics Data System (ADS)

    Kanekar, Anjor; Schekochihin, Alexander; Hammett, Greg; Dorland, William; Loureiro, Nuno

    2014-10-01

    We consider a simple kinetic model for the evolution of the particle distribution function in a magnetized turbulent plasma that includes both phase mixing (Landau damping) and advection by a stochastic velocity field: a ``kinetic passive scalar'' in the Batchelor regime. The advection due to stochastic velocity field allows for a stochastic version of the plasma echo by coupling the ``phase-mixing'' and the ``un-phase-mixing'' components of the free energy. We have developed a new analytical framework to diagnose the efficiency of such coupling. We have also developed a new GPU code named Gandalf that solves this kinetic model numerically. In this poster, we shall present numerical and analytical results related to this work.

  2. Antidiffusive velocities for multipass donor cell advection

    SciTech Connect

    Margolin, L.G. ); Smolarkiewicz, P.K. )

    1989-12-01

    Smolarkiewicz describes an iterative process for approximating the advection equation. Basically, he uses a donor cell approximation to correct for the truncation error of the originally specified donor cell scheme. This step may be repeated an arbitrary number of times leading to successively more accurate solutions to the advection equation. In this report, we show how to sum the successive approximations analytically to find a single antidiffusive velocity that represents the effects of an arbitrary number of passes. The analysis is first done dimension to illustrate the method. The analysis is then repeated in two dimensions. The existence of cross terms in the truncation analysis of the two-dimensional equations introduces an extra complication into the calculation. We discuss the implementation of our new antidiffusive velocities and provide some examples of applications. 6 refs., 5 figs., 4 tabs.

  3. DEVELOPMENT AND DEMONSTRATION OF A BIDIRECTIONAL ADVECTIVE FLUX METER FOR SEDIMENT-WATER INTERFACE

    EPA Science Inventory

    A bidirectional advective flux meter for measuring water transport across the sediment-water interface has been successfully developed and field tested. The flow sensor employs a heat-pulse technique combined with a flow collection funnel for the flow measurement. Because the dir...

  4. ADVECTION, EDGE, AND OASIS EFFECTS ON SPATIAL MOISTURE AND FLUX FIELDS FROM LIDAR

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Relatively narrow forest stands such as the riparian Tamarisk bordering the Rio Grande are subject to dry air advection from the adjacent semi-desert environment. The transport of warm dry air into the canopy has a profound effect upon the spatial properties of the moisture field and associated lat...

  5. Evaluation of Monte Carlo Electron-Transport Algorithms in the Integrated Tiger Series Codes for Stochastic-Media Simulations

    NASA Astrophysics Data System (ADS)

    Franke, Brian C.; Kensek, Ronald P.; Prinja, Anil K.

    2014-06-01

    Stochastic-media simulations require numerous boundary crossings. We consider two Monte Carlo electron transport approaches and evaluate accuracy with numerous material boundaries. In the condensed-history method, approximations are made based on infinite-medium solutions for multiple scattering over some track length. Typically, further approximations are employed for material-boundary crossings where infinite-medium solutions become invalid. We have previously explored an alternative "condensed transport" formulation, a Generalized Boltzmann-Fokker-Planck GBFP method, which requires no special boundary treatment but instead uses approximations to the electron-scattering cross sections. Some limited capabilities for analog transport and a GBFP method have been implemented in the Integrated Tiger Series (ITS) codes. Improvements have been made to the condensed history algorithm. The performance of the ITS condensed-history and condensed-transport algorithms are assessed for material-boundary crossings. These assessments are made both by introducing artificial material boundaries and by comparison to analog Monte Carlo simulations.

  6. High Order Semi-Lagrangian Advection Scheme

    NASA Astrophysics Data System (ADS)

    Malaga, Carlos; Mandujano, Francisco; Becerra, Julian

    2014-11-01

    In most fluid phenomena, advection plays an important roll. A numerical scheme capable of making quantitative predictions and simulations must compute correctly the advection terms appearing in the equations governing fluid flow. Here we present a high order forward semi-Lagrangian numerical scheme specifically tailored to compute material derivatives. The scheme relies on the geometrical interpretation of material derivatives to compute the time evolution of fields on grids that deform with the material fluid domain, an interpolating procedure of arbitrary order that preserves the moments of the interpolated distributions, and a nonlinear mapping strategy to perform interpolations between undeformed and deformed grids. Additionally, a discontinuity criterion was implemented to deal with discontinuous fields and shocks. Tests of pure advection, shock formation and nonlinear phenomena are presented to show performance and convergence of the scheme. The high computational cost is considerably reduced when implemented on massively parallel architectures found in graphic cards. The authors acknowledge funding from Fondo Sectorial CONACYT-SENER Grant Number 42536 (DGAJ-SPI-34-170412-217).

  7. A Novel Algorithm for Solving the Multidimensional Neutron Transport Equation on Massively Parallel Architectures

    SciTech Connect

    Azmy, Yousry

    2014-06-10

    We employ the Integral Transport Matrix Method (ITMM) as the kernel of new parallel solution methods for the discrete ordinates approximation of the within-group neutron transport equation. The ITMM abandons the repetitive mesh sweeps of the traditional source iterations (SI) scheme in favor of constructing stored operators that account for the direct coupling factors among all the cells' fluxes and between the cells' and boundary surfaces' fluxes. The main goals of this work are to develop the algorithms that construct these operators and employ them in the solution process, determine the most suitable way to parallelize the entire procedure, and evaluate the behavior and parallel performance of the developed methods with increasing number of processes, P. The fastest observed parallel solution method, Parallel Gauss-Seidel (PGS), was used in a weak scaling comparison with the PARTISN transport code, which uses the source iteration (SI) scheme parallelized with the Koch-baker-Alcouffe (KBA) method. Compared to the state-of-the-art SI-KBA with diffusion synthetic acceleration (DSA), this new method- even without acceleration/preconditioning-is completitive for optically thick problems as P is increased to the tens of thousands range. For the most optically thick cells tested, PGS reduced execution time by an approximate factor of three for problems with more than 130 million computational cells on P = 32,768. Moreover, the SI-DSA execution times's trend rises generally more steeply with increasing P than the PGS trend. Furthermore, the PGS method outperforms SI for the periodic heterogeneous layers (PHL) configuration problems. The PGS method outperforms SI and SI-DSA on as few as P = 16 for PHL problems and reduces execution time by a factor of ten or more for all problems considered with more than 2 million computational cells on P = 4.096.

  8. Backward fractional advection dispersion model for contaminant source prediction

    NASA Astrophysics Data System (ADS)

    Zhang, Yong; Meerschaert, Mark M.; Neupauer, Roseanna M.

    2016-04-01

    The forward Fractional Advection Dispersion Equation (FADE) provides a useful model for non-Fickian transport in heterogeneous porous media. The space FADE captures the long leading tail, skewness, and fast spreading typically seen in concentration profiles from field data. This paper develops the corresponding backward FADE model, to identify source location and release time. The backward method is developed from the theory of inverse problems, and then explained from a stochastic point of view. The resultant backward FADE differs significantly from the traditional backward Advection Dispersion Equation (ADE) because the fractional derivative is not self-adjoint and the probability density function for backward locations is highly skewed. Finally, the method is validated using tracer data from a well-known field experiment, where the peak of the backward FADE curve predicts source release time, while the median or a range of percentiles can be used to determine the most likely source location for the observed plume. The backward ADE cannot reliably identify the source in this application, since the forward ADE does not provide an adequate fit to the concentration data.

  9. Influence of porewater advection on denitrification in carbonate sands: Evidence from repacked sediment column experiments

    NASA Astrophysics Data System (ADS)

    Santos, Isaac R.; Eyre, Bradley D.; Glud, Ronnie N.

    2012-11-01

    Porewater flow enhances mineralization rates in organic-poor permeable sands. Here, a series of sediment column experiments were undertaken to assess the potential effect of advective porewater transport on denitrification in permeable carbonate sands collected from Heron Island (Great Barrier Reef). Experimental conditions (flow path length, advection rate, and temperature) were manipulated to represent conditions similar to near shore tropical environments. HgCl2-poisoned controls were used to assess whether reactions were microbially mediated. Overall, significant correlations were found between oxygen consumption and N2 production. The N:O2 slope of 0.114 implied that about 75% of all the nitrogen mineralized was denitrified. A 4-fold increase in sediment column length (from 10 to 40 cm) resulted in an overall increase in oxygen consumption (1.6-fold), TCO2 production (1.8-fold), and denitrification (1.9-fold). Oxic respiration increased quickly until advection reached 80 L m-2 h-1 and then plateaued at higher advection rates. Interestingly, denitrification peaked (up to 336 μmol N2 m-2 h-1) at intermediate advection rates (30-80 L m-2 h-1). We speculate that intermediate advection rates enhance the development of microniches (i.e., steep oxygen gradients) within porous carbonate sands, perhaps providing optimum conditions for denitrification. The denitrification peak fell within the broad range of advection rates (often on scales of 1-100 L m-2 h-1) typically found on continental shelves implying that carbonate sands may play a major, but as yet unquantified, role in oceanic nitrogen budgets.

  10. An Improved Algorithm and Its Parallel Implementation for Solving a General Blood-Tissue Transport and Metabolism Model

    PubMed Central

    Xie, Dexuan; Dash, Ranjan K.; Beard, Daniel A.

    2009-01-01

    Fast algorithms for simulating mathematical models of coupled blood-tissue transport and metabolism are critical for the analysis of data on transport and reaction in tissues. Here, by combining the method of characteristics with the standard grid discretization technique, a novel algorithm is introduced for solving a general blood-tissue transport and metabolism model governed by a large system of one-dimensional semilinear first order partial differential equations. The key part of the algorithm is to approximate the model as a group of independent ordinary differential equation (ODE) systems such that each ODE system has the same size as the model and can be integrated independently. Thus the method can be easily implemented in parallel on a large scale multiprocessor computer. The accuracy of the algorithm is demonstrated for solving a simple blood-tissue exchange model introduced by Sangren and Sheppard (Bull. Math. Biophys. 15:387–394, 1953), which has an analytical solution. Numerical experiments made on a distributed-memory parallel computer (an HP Linux cluster) and a shared-memory parallel computer (a SGI Origin 2000) demonstrate the parallel efficiency of the algorithm. PMID:20161089

  11. An Improved Algorithm and Its Parallel Implementation for Solving a General Blood-Tissue Transport and Metabolism Model.

    PubMed

    Xie, Dexuan; Dash, Ranjan K; Beard, Daniel A

    2009-11-01

    Fast algorithms for simulating mathematical models of coupled blood-tissue transport and metabolism are critical for the analysis of data on transport and reaction in tissues. Here, by combining the method of characteristics with the standard grid discretization technique, a novel algorithm is introduced for solving a general blood-tissue transport and metabolism model governed by a large system of one-dimensional semilinear first order partial differential equations. The key part of the algorithm is to approximate the model as a group of independent ordinary differential equation (ODE) systems such that each ODE system has the same size as the model and can be integrated independently. Thus the method can be easily implemented in parallel on a large scale multiprocessor computer. The accuracy of the algorithm is demonstrated for solving a simple blood-tissue exchange model introduced by Sangren and Sheppard (Bull. Math. Biophys. 15:387-394, 1953), which has an analytical solution. Numerical experiments made on a distributed-memory parallel computer (an HP Linux cluster) and a shared-memory parallel computer (a SGI Origin 2000) demonstrate the parallel efficiency of the algorithm. PMID:20161089

  12. A two-dimensional coupled flow-mass transport model based on an improved unstructured finite volume algorithm.

    PubMed

    Zhou, Jianzhong; Song, Lixiang; Kursan, Suncana; Liu, Yi

    2015-05-01

    A two-dimensional coupled water quality model is developed for modeling the flow-mass transport in shallow water. To simulate shallow flows on complex topography with wetting and drying, an unstructured grid, well-balanced, finite volume algorithm is proposed for numerical resolution of a modified formulation of two-dimensional shallow water equations. The slope-limited linear reconstruction method is used to achieve second-order accuracy in space. The algorithm adopts a HLLC-based integrated solver to compute the flow and mass transport fluxes simultaneously, and uses Hancock's predictor-corrector scheme for efficient time stepping as well as second-order temporal accuracy. The continuity and momentum equations are updated in both wet and dry cells. A new hybrid method, which can preserve the well-balanced property of the algorithm for simulations involving flooding and recession, is proposed for bed slope terms approximation. The effectiveness and robustness of the proposed algorithm are validated by the reasonable good agreement between numerical and reference results of several benchmark test cases. Results show that the proposed coupled flow-mass transport model can simulate complex flows and mass transport in shallow water. PMID:25686488

  13. Aplication of LIRIC algorithm to study aerosol transport over Belsk, Poland

    NASA Astrophysics Data System (ADS)

    Pietruczuk, Aleksander; Posyniak, Michał

    2015-04-01

    In this work synergy of measurements done by of a LIDAR and a sun-sky scanning photometer is presented. The LIdar-Radiometer Inversion Code (LIRIC) was applied to study periodic events of increased values of the aerosol optical depth (AOD) observed at Belsk (Poland). Belsk is a background site located in a rural area around 50 km south from Warsaw. Events of increased AOD occur mainly during spring and they coincide with events of elevated concentrations of particulate matter (PM10). This phenomenon is observed in all eastern Europe, e.g. in Minsk, and is caused by long range aerosol transport. Our previous work showed aerosol transport from the border between Belarus, Ukraine and Russia in the planetary boundary layer (PBL), and from north Africa in the free troposphere. The LIRIC algorithm, which uses optical and microphysical properties of the aerosol derived from photometric measurements and LIDAR profiles, was applied to study vertical distribution of fine and coarse modes of aerosol. The analysis of the airmass backward trajectories and models results (DREAM and NAAPS)was also used to determine a possible aerosol type and its source region. This study proved our previous findings. Most of events with increased AODs are observed during spring. In this season the fine mode aerosol is mainly present in the PBL. On the basis of the trajectory analysis and the NAAPS results we presume that it is the absorbing aerosol originating from the regions of seasonal biomass burning in eastern Europe, i.e. the area mentioned above. The events with increased AODs were also found during summer. In this case the fine mode aerosol is transported in the PBL a like to spring season. However, our analysis of trajectories and model results indicated western Europe as a source region. It is probably urban/industrial aerosol. The coarse mode aerosol is transported mainly in the free troposphere as separate layers. The analysis of backward trajectories indicates northern Africa as a

  14. Metamorphism during temperature gradient with undersaturated advective airflow in a snow sample

    NASA Astrophysics Data System (ADS)

    Ebner, Pirmin Philipp; Schneebeli, Martin; Steinfeld, Aldo

    2016-04-01

    Snow at or close to the surface commonly undergoes temperature gradient metamorphism under advective flow, which alters its microstructure and physical properties. Time-lapse X-ray microtomography is applied to investigate the structural dynamics of temperature gradient snow metamorphism exposed to an advective airflow in controlled laboratory conditions. Cold saturated air at the inlet was blown into the snow samples and warmed up while flowing across the sample with a temperature gradient of around 50 K m-1. Changes of the porous ice structure were observed at mid-height of the snow sample. Sublimation occurred due to the slight undersaturation of the incoming air into the warmer ice matrix. Diffusion of water vapor opposite to the direction of the temperature gradient counteracted the mass transport of advection. Therefore, the total net ice change was negligible leading to a constant porosity profile. However, the strong recrystallization of water molecules in snow may impact its isotopic or chemical content.

  15. A Study of the Physical Processes of an Advection Fog Boundary Layer

    NASA Astrophysics Data System (ADS)

    Liu, Duan Yang; Yan, Wen Lian; Yang, Jun; Pu, Mei Juan; Niu, Sheng Jie; Li, Zi Hua

    2016-01-01

    A large quantity of advection fog appeared in the Yangtze River delta region between 1 and 2 December 2009. Here, we detail the fog formation and dissipation processes and the background weather conditions. The fog boundary layer and its formation and dissipation mechanisms have also been analyzed using field data recorded in a northern suburb of Nanjing. The results showed the following: (1) This advection fog was generated by interaction between advection of a north-east cold ground layer and a south-east warm upper layer. The double-inversion structure generated by this interaction between the cold and warm advections and steady south-east vapour transport was the main cause of this long-lasting fog. The double-inversion structure provided good thermal conditions for the thick fog, and the south-east vapour transport was not only conducive to maintaining the thickness of the fog but also sustained its long duration. (2) The fog-top altitude was over 600 m for most of the time, and the fog reduced visibility to less than 100 m for approximately 12 h. (3) The low-level jet near the lower inversion layer also played a role in maintaining the thick fog system by promoting heat, momentum and south-east vapour transport.

  16. Coupled ensemble flow line advection and analysis.

    PubMed

    Guo, Hanqi; Yuan, Xiaoru; Huang, Jian; Zhu, Xiaomin

    2013-12-01

    Ensemble run simulations are becoming increasingly widespread. In this work, we couple particle advection with pathline analysis to visualize and reveal the differences among the flow fields of ensemble runs. Our method first constructs a variation field using a Lagrangian-based distance metric. The variation field characterizes the variation between vector fields of the ensemble runs, by extracting and visualizing the variation of pathlines within ensemble. Parallelism in a MapReduce style is leveraged to handle data processing and computing at scale. Using our prototype system, we demonstrate how scientists can effectively explore and investigate differences within ensemble simulations. PMID:24051840

  17. Experiments in Advective and Turbulent Hyporheic Pumping

    NASA Astrophysics Data System (ADS)

    Mccluskey, A. H.; Grant, S.; Stewardson, M. J.

    2014-12-01

    Hyporheic exchange (HE) is the mixing of stream and subsurface waters beneath the sediment-water interface (SWI). At the patch and reach scales, HE is dominated by periodic upwelling and downwelling zones, induced by pressure variation and processes within the turbulent boundary layer (TBL). This can be caused by (1) the geometry of the stream, imposing a stationary wave at the SWI or (2) by a travelling wave associated with the propagation of turbulent pressure waves generated from the TBL. Case (1) has generally been the favoured model of hyporheic exchange and has been referred to as hyporheic 'pumping' by Elliott and Brooks, and subsequently others. Case (2) can be termed turbulent pumping, and has been proposed as a mechanism to model the combined effects of turbulent dispersion alongside steady-state advection. While this has been represented numerically and analytically, conjecture remains about the physical representation of these combined processes. We present initial results from experiments undertaken to classify the spatial and temporal characteristics of pressure variation at and beneath the SWI, with a periodic sinusoidal geometry of wavelength 0.28m and height 0.02m. As an initial characterisation, the advective flow profile has been examined using time-lapse photography of dyes released across the span of a periodic downwelling zone. These tracer tests confirmed delineation of isolated upwelling and downwelling cells as noted by previous authors in modelling studies. However, their distribution deviates from the typical pumping pattern with increased discharge and stream gradient. Empirical orthogonal function (EOF) analysis of high frequency (250Hz) pressure measurements, sampled at an array along the centroid of the flume underneath one wavelength gave further insight into the spatial distribution of turbulent signatures arising from roughness-generated turbulence. A turbulent frequency of 6-10Hz dominates, however the penetration depth appears to

  18. Ion-exchange reactions on clay minerals coupled with advection/dispersion processes. Application to Na+/Ca2+ exchange on vermiculite: Reactive-transport modeling, batch and stirred flow-through reactor experiments

    NASA Astrophysics Data System (ADS)

    Tertre, E.; Hubert, F.; Bruzac, S.; Pacreau, M.; Ferrage, E.; Prêt, D.

    2013-07-01

    The present study aims at testing the validity of using an Na+/Ca2+ ion-exchange model, derived from batch data to interpret experimental Ca2+-for-Na+ exchange breakthrough curves obtained on vermiculite (a common swelling clay mineral in surface environments). The ion-exchange model was constructed considering the multi-site nature of the vermiculite surface as well as the exchange of all aqueous species (Mg2+ derived from the dissolution of the solid and H+). The proposed ion-exchange model was then coupled with a transport model, and the predicted breakthrough curves were compared with the experimental ones obtained using a well stirred flow-through reactor. For a given solute residence time in the reactor (typically 50 min), our thermodynamic model based on instantaneous equilibrium was found to accurately reproduce several of the experimental breakthrough curves, depending on the Na+ and Ca2+ concentrations of the influents pumped through the reactor. However the model failed to reproduce experimental breakthrough curves obtained at high flow rates and low chemical gradient between the exchanger phase and the solution. An alternative model based on a hybrid equilibrium/kinetic approach was thus used and allowed predicting experimental data. Based on these results, we show that a simple parameter can be used to differentiate between thermodynamic and kinetic control of the exchange reaction with water flow. The results of this study are relevant for natural systems where two aquatic environments having contrasted chemistries interact. Indeed, the question regarding the attainment of a full equilibrium in such a system during the contact time of the aqueous phase with the particle/colloid remains most often open. In this context, we show that when a river (a flow of fresh water) encounters marine colloids, a systematic full equilibrium can be assumed (i.e., the absence of kinetic effects) when the residence time of the solute in 1 m3 of the system is ⩾6200 h.

  19. Dosimetric impact of Acuros XB deterministic radiation transport algorithm for heterogeneous dose calculation in lung cancer

    SciTech Connect

    Han Tao; Followill, David; Repchak, Roman; Molineu, Andrea; Howell, Rebecca; Salehpour, Mohammad; Mikell, Justin; Mourtada, Firas

    2013-05-15

    Purpose: The novel deterministic radiation transport algorithm, Acuros XB (AXB), has shown great potential for accurate heterogeneous dose calculation. However, the clinical impact between AXB and other currently used algorithms still needs to be elucidated for translation between these algorithms. The purpose of this study was to investigate the impact of AXB for heterogeneous dose calculation in lung cancer for intensity-modulated radiation therapy (IMRT) and volumetric-modulated arc therapy (VMAT). Methods: The thorax phantom from the Radiological Physics Center (RPC) was used for this study. IMRT and VMAT plans were created for the phantom in the Eclipse 11.0 treatment planning system. Each plan was delivered to the phantom three times using a Varian Clinac iX linear accelerator to ensure reproducibility. Thermoluminescent dosimeters (TLDs) and Gafchromic EBT2 film were placed inside the phantom to measure delivered doses. The measurements were compared with dose calculations from AXB 11.0.21 and the anisotropic analytical algorithm (AAA) 11.0.21. Two dose reporting modes of AXB, dose-to-medium in medium (D{sub m,m}) and dose-to-water in medium (D{sub w,m}), were studied. Point doses, dose profiles, and gamma analysis were used to quantify the agreement between measurements and calculations from both AXB and AAA. The computation times for AAA and AXB were also evaluated. Results: For the RPC lung phantom, AAA and AXB dose predictions were found in good agreement to TLD and film measurements for both IMRT and VMAT plans. TLD dose predictions were within 0.4%-4.4% to AXB doses (both D{sub m,m} and D{sub w,m}); and within 2.5%-6.4% to AAA doses, respectively. For the film comparisons, the gamma indexes ({+-}3%/3 mm criteria) were 94%, 97%, and 98% for AAA, AXB{sub Dm,m}, and AXB{sub Dw,m}, respectively. The differences between AXB and AAA in dose-volume histogram mean doses were within 2% in the planning target volume, lung, heart, and within 5% in the spinal cord

  20. Waves, advection, and cloud patterns on Venus

    NASA Technical Reports Server (NTRS)

    Schinder, Paul J.; Gierasch, Peter J.; Leroy, Stephen S.; Smith, Michael D.

    1990-01-01

    The stable layers adjacent to the nearly neutral layer within the Venus clouds are found to be capable of supporting vertically trapped, horizontally propagating waves with horizontal wavelengths of about 10 km and speeds of a few meters per second relative to the mean wind in the neutral layer. These waves may possibly be excited by turbulence within the neutral layer. Here, the properties of the waves, and the patterns which they might produce within the visible clouds if excited near the subsolar point are examined. The patterns can be in agreement with many features in images. The waves are capable of transferring momentum latitudinally to help maintain the general atmospheric spin, but at present we are not able to evaluate wave amplitudes. We also examine an alternative possibility that the cloud patterns are produced by advection and shearing by the mean zonal and meridional flow of blobs formed near the equator. It is concluded that advection and shearing by the mean flow is the most likely explanation for the general pattern of small scale striations.

  1. Configuration of the electron transport algorithm of PENELOPE to simulate ion chambers

    NASA Astrophysics Data System (ADS)

    Sempau, J.; Andreo, P.

    2006-07-01

    The stability of the electron transport algorithm implemented in the Monte Carlo code PENELOPE with respect to variations of its step length is analysed in the context of the simulation of ion chambers used in photon and electron dosimetry. More precisely, the degree of violation of the Fano theorem is quantified (to the 0.1% level) as a function of the simulation parameters that determine the step size. To meet the premises of the theorem, we define an infinite graphite phantom with a cavity delimited by two parallel planes (i.e., a slab) and filled with a 'gas' that has the same composition as graphite but a mass density a thousand-fold smaller. The cavity walls and the gas have identical cross sections, including the density effect associated with inelastic collisions. Electrons with initial kinetic energies equal to 0.01, 0.1, 1, 10 or 20 MeV are generated in the wall and in the gas with a uniform intensity per unit mass. Two configurations, motivated by the design of pancake- and thimble-type chambers, are considered, namely, with the initial direction of emission perpendicular or parallel to the gas-wall interface. This version of the Fano test avoids the need of photon regeneration and the calculation of photon energy absorption coefficients, two ingredients that are common to some alternative definitions of equivalent tests. In order to reduce the number of variables in the analysis, a global new simulation parameter, called the speedup parameter (a), is introduced. It is shown that setting a = 0.2, corresponding to values of the usual PENELOPE parameters of C1 = C2 = 0.02 and values of WCC and WCR that depend on the initial and absorption energies, is appropriate for maximum tolerances of the order of 0.2% with respect to an analogue, i.e., interaction-by-interaction, simulation of the same problem. The precise values of WCC and WCR do not seem to be critical to achieve this level of accuracy. The step-size dependence of the absorbed dose is explained in

  2. Diffusion algorithms and data reduction routine for onsite launch predictions for the transport of Titan 3 C exhaust effluents

    NASA Technical Reports Server (NTRS)

    Stephens, J. B.; Hamilton, P. A.

    1974-01-01

    The NASA/MSFC multilayer diffusion algorithms have been specialized for the prediction of the surface impact for the dispersive transport of the exhaust effluents from the launch of a Titan 3 vehicle. This specialization permits these transport predictions to be made at the launch range in real time so that the effluent monitoring teams can optimize their monitoring grids. Basically, the data reduction routine requires just the meteorology profiles for the thermodynamics and kinematics of the atmosphere as an input. These profiles are graphed along with the resulting exhaust cloud rise history, the center line concentrations and dosages, and the hydrogen chloride isopleths.

  3. The DANTE Boltzmann transport solver: An unstructured mesh, 3-D, spherical harmonics algorithm compatible with parallel computer architectures

    SciTech Connect

    McGhee, J.M.; Roberts, R.M.; Morel, J.E.

    1997-06-01

    A spherical harmonics research code (DANTE) has been developed which is compatible with parallel computer architectures. DANTE provides 3-D, multi-material, deterministic, transport capabilities using an arbitrary finite element mesh. The linearized Boltzmann transport equation is solved in a second order self-adjoint form utilizing a Galerkin finite element spatial differencing scheme. The core solver utilizes a preconditioned conjugate gradient algorithm. Other distinguishing features of the code include options for discrete-ordinates and simplified spherical harmonics angular differencing, an exact Marshak boundary treatment for arbitrarily oriented boundary faces, in-line matrix construction techniques to minimize memory consumption, and an effective diffusion based preconditioner for scattering dominated problems. Algorithm efficiency is demonstrated for a massively parallel SIMD architecture (CM-5), and compatibility with MPP multiprocessor platforms or workstation clusters is anticipated.

  4. A family of Eulerian-Lagrangian localized adjoint methods for multi-dimensional advection-reaction equations

    SciTech Connect

    Wang, H.; Man, S.; Ewing, R.E.; Qin, G.; Lyons, S.L.; Al-Lawatia, M.

    1999-06-10

    Many difficult problems arise in the numerical simulation of fluid flow processes within porous media in petroleum reservoir simulation and in subsurface contaminant transport and remediation. The authors develop a family of Eulerian-Lagrangian localized adjoint methods for the solution of the initial-boundary value problems for first-order advection-reaction equations on general multi-dimensional domains. Different tracking algorithms, including the Euler and Runge-Kutta algorithms, are used. The derived schemes, which are full mass conservative, naturally incorporate inflow boundary conditions into their formulations and do not need any artificial outflow boundary conditions. Moreover, they have regularly structured, well-conditioned, symmetric, and positive-definite coefficient matrices, which can be efficiently solved by the conjugate gradient method in an optimal order number of iterations without any preconditioning needed. Numerical results are presented to compare the performance of the ELLAM schemes with many well studied and widely used methods, including the upwind finite difference method, the Galerkin and the Petrov-Galerkin finite element methods with backward-Euler or Crank-Nicolson temporal discretization, the streamline diffusion finite element methods, the monotonic upstream-centered scheme for conservation laws (MUSCL), and the Minmod scheme.

  5. CDF Solutions of Advection-Reaction equations with uncertain parameters (Invited)

    NASA Astrophysics Data System (ADS)

    Boso, F.; Tartakovsky, D. M.

    2013-12-01

    Flow and transport models are affected by parametric uncertainty. Quantitative forecasting of such processes in natural porous media are especially prone to uncertainty because of the inaccessibility and multi-scale nature of the subsurface. We consider a reduced-complexity stochastic transport system which takes into account advection and nonlinear reactions in advection-reaction equations (AREs) with uncertain (random) velocity and reaction parameters. We derive a deterministic equation that governs the evolution of cumulative distribution function (CDF) of a solution of the underlying ARE. Although requiring closure, this differential equation benefits from uniquely defined boundary and initial conditions and can be solved with classic techniques. Here we analyze the accuracy and robustness of the large-eddy-diffusivity closure by comparison with Monte Carlo simulations for different correlation structures and parameters.

  6. Simulation of Long Lived Tracers Using an Improved Empirically-Based Two-Dimensional Model Transport Algorithm

    NASA Technical Reports Server (NTRS)

    Fleming, Eric L.; Jackman, Charles H.; Stolarski, Richard S.; Considine, David B.

    1998-01-01

    We have developed a new empirically-based transport algorithm for use in our GSFC two-dimensional transport and chemistry assessment model. The new algorithm contains planetary wave statistics, and parameterizations to account for the effects due to gravity waves and equatorial Kelvin waves. We will present an overview of the new algorithm, and show various model-data comparisons of long-lived tracers as part of the model validation. We will also show how the new algorithm gives substantially better agreement with observations compared to our previous model transport. The new model captures much of the qualitative structure and seasonal variability observed methane, water vapor, and total ozone. These include: isolation of the tropics and winter polar vortex, the well mixed surf-zone region of the winter sub-tropics and mid-latitudes, and the propagation of seasonal signals in the tropical lower stratosphere. Model simulations of carbon-14 and strontium-90 compare fairly well with observations in reproducing the peak in mixing ratio at 20-25 km, and the decrease with altitude in mixing ratio above 25 km. We also ran time dependent simulations of SF6 from which the model mean age of air values were derived. The oldest air (5.5 to 6 years) occurred in the high latitude upper stratosphere during fall and early winter of both hemispheres, and in the southern hemisphere lower stratosphere during late winter and early spring. The latitudinal gradient of the mean ages also compare well with ER-2 aircraft observations in the lower stratosphere.

  7. Comparison of an algebraic multigrid algorithm to two iterative solvers used for modeling ground water flow and transport

    USGS Publications Warehouse

    Detwiler, R.L.; Mehl, S.; Rajaram, H.; Cheung, W.W.

    2002-01-01

    Numerical solution of large-scale ground water flow and transport problems is often constrained by the convergence behavior of the iterative solvers used to solve the resulting systems of equations. We demonstrate the ability of an algebraic multigrid algorithm (AMG) to efficiently solve the large, sparse systems of equations that result from computational models of ground water flow and transport in large and complex domains. Unlike geometric multigrid methods, this algorithm is applicable to problems in complex flow geometries, such as those encountered in pore-scale modeling of two-phase flow and transport. We integrated AMG into MODFLOW 2000 to compare two- and three-dimensional flow simulations using AMG to simulations using PCG2, a preconditioned conjugate gradient solver that uses the modified incomplete Cholesky preconditioner and is included with MODFLOW 2000. CPU times required for convergence with AMG were up to 140 times faster than those for PCG2. The cost of this increased speed was up to a nine-fold increase in required random access memory (RAM) for the three-dimensional problems and up to a four-fold increase in required RAM for the two-dimensional problems. We also compared two-dimensional numerical simulations of steady-state transport using AMG and the generalized minimum residual method with an incomplete LU-decomposition preconditioner. For these transport simulations, AMG yielded increased speeds of up to 17 times with only a 20% increase in required RAM. The ability of AMG to solve flow and transport problems in large, complex flow systems and its ready availability make it an ideal solver for use in both field-scale and pore-scale modeling.

  8. Comparison of an algebraic multigrid algorithm to two iterative solvers used for modeling ground water flow and transport.

    PubMed

    Detwiler, Russell L; Mehl, Steffen; Rajaram, Harihar; Cheung, Wendy W

    2002-01-01

    Numerical solution of large-scale ground water flow and transport problems is often constrained by the convergence behavior of the iterative solvers used to solve the resulting systems of equations. We demonstrate the ability of an algebraic multigrid algorithm (AMG) to efficiently solve the large, sparse systems of equations that result from computational models of ground water flow and transport in large and complex domains. Unlike geometric multigrid methods, this algorithm is applicable to problems in complex flow geometries, such as those encountered in pore-scale modeling of two-phase flow and transport. We integrated AMG into MODFLOW 2000 to compare two- and three-dimensional flow simulations using AMG to simulations using PCG2, a preconditioned conjugate gradient solver that uses the modified incomplete Cholesky preconditioner and is included with MODFLOW 2000. CPU times required for convergence with AMG were up to 140 times faster than those for PCG2. The cost of this increased speed was up to a nine-fold increase in required random access memory (RAM) for the three-dimensional problems and up to a four-fold increase in required RAM for the two-dimensional problems. We also compared two-dimensional numerical simulations of steady-state transport using AMG and the generalized minimum residual method with an incomplete LU-decomposition preconditioner. For these transport simulations, AMG yielded increased speeds of up to 17 times with only a 20% increase in required RAM. The ability of AMG to solve flow and transport problems in large, complex flow systems and its ready availability make it an ideal solver for use in both field-scale and pore-scale modeling. PMID:12019641

  9. Hourly and daily evapotranspiration of alfalfa under regional advection

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Regional advection often affects the evapotranspiration rates of irrigated crops in the Southern High Plains. In 1998, during a 10-day period (13-22 June) of unusually strong advection, high evapotranspiration (ET) rates for unstressed, irrigated alfalfa (Medicago sativa) were measured with two prec...

  10. Advective pore water input of nutrients to the Satilla River Estuary, Georgia, USA

    NASA Astrophysics Data System (ADS)

    Jahnke, R. A.; Alexander, C. R.; Kostka, J. E.

    2003-03-01

    In situ benthic flux measurements, pore water nutrient profiles, water column nutrient distributions, sediment grain size distributions and side-scan sonar observations suggest that advective transport of pore waters may be a major input pathway of nutrients into the Satilla River Estuary (coastal Georgia, USA). In situ benthic chamber incubations demonstrate the occurrence of highly variable, but occasionally very large sea floor fluxes of silicate, phosphate, and ammonium. Locally occurring benthic microbial mineralization of organic matter, as estimated by S 35-sulphate reduction rate measurements, is insufficient to support these large fluxes. We hypothesize that the observed interlayering of permeable, sandy sediments with fine-grained, organic-rich sediments in the estuary provides conduits for advective transport of pore water constituents out of the sediments. Because permeable layers may extend significant distances beneath the salt marsh, the large fluxes observed may be supported by remineralization occurring over large areas adjacent to the estuary. Advective transport may be induced by pressure gradients generated by a variety of processes, including landward recharge by meteoric or rain waters if sand layers extend far enough into the maritime coastal lands. Alternatively, tidal variations across the salt marsh sediment surface may hydraulically pump water through the sediment system. Because these fluxes appear to be concentrated into small layers, this source may be a significant input of nutrients to the estuary even if permeable, sandy layers comprise a very small proportion of the seabed.

  11. Investigation of the influence of groundwater advection on energy extraction rates for sustainable borehole heat exchanger operation

    NASA Astrophysics Data System (ADS)

    Schelenz, Sophie; Dietrich, Peter; Vienken, Thomas

    2016-04-01

    A sustainable thermal exploitation of the shallow subsurface requires a precise understanding of all relevant heat transport processes. Currently, planning practice of shallow geothermal systems (especially for systems < 30 kW) focuses on conductive heat transport as the main energy source while the impact of groundwater flow as the driver for advective heat transport is neglected or strongly simplified. The presented study proves that those simplifications of complex geological and hydrogeological subsurface characteristics are insufficient for a precise evaluation of site-specific energy extraction rates. Based on synthetic model scenarios with varying subsurface conditions (groundwater flow velocity and aquifer thickness) the impact of advection on induced long term temperature changes in 5 and 10 m distance of the borehole heat exchanger is presented. Extending known investigations, this study enhances the evaluation of shallow geothermal energy extraction rates by considering conductive and advective heat transport under varying aquifer thicknesses. Further, it evaluates the impact of advection on installation lengths of the borehole heat exchanger to optimize the initial financial investment. Finally, an evaluation approach is presented that classifies relevant heat transport processes according to their Péclet number to enable a first quantitative assessment of the subsurface energy regime and recommend further investigation and planning procedures.

  12. A balancing domain decomposition method by constraints for advection-diffusion problems

    SciTech Connect

    Tu, Xuemin; Li, Jing

    2008-12-10

    The balancing domain decomposition methods by constraints are extended to solving nonsymmetric, positive definite linear systems resulting from the finite element discretization of advection-diffusion equations. A pre-conditioned GMRES iteration is used to solve a Schur complement system of equations for the subdomain interface variables. In the preconditioning step of each iteration, a partially sub-assembled finite element problem is solved. A convergence rate estimate for the GMRES iteration is established, under the condition that the diameters of subdomains are small enough. It is independent of the number of subdomains and grows only slowly with the subdomain problem size. Numerical experiments for several two-dimensional advection-diffusion problems illustrate the fast convergence of the proposed algorithm.

  13. The Airborne Cloud-Aerosol Transport System. Part I; Overview and Description of the Instrument and Retrival Algorithms

    NASA Technical Reports Server (NTRS)

    Yorks, John E.; Mcgill, Matthew J.; Scott, V. Stanley; Kupchock, Andrew; Wake, Shane; Hlavka, Dennis; Hart, William; Selmer, Patrick

    2014-01-01

    The Airborne Cloud-Aerosol Transport System (ACATS) is a multi-channel Doppler lidar system recently developed at NASA Goddard Space Flight Center (GSFC). A unique aspect of the multi-channel Doppler lidar concept such as ACATS is that it is also, by its very nature, a high spectral resolution lidar (HSRL). Both the particulate and molecular scattered signal can be directly and unambiguously measured, allowing for direct retrievals of particulate extinction. ACATS is therefore capable of simultaneously resolving the backscatterextinction properties and motion of a particle from a high altitude aircraft. ACATS has flown on the NASA ER-2 during test flights over California in June 2012 and science flights during the Wallops Airborne Vegetation Experiment (WAVE) in September 2012. This paper provides an overview of the ACATS method and instrument design, describes the ACATS retrieval algorithms for cloud and aerosol properties, and demonstrates the data products that will be derived from the ACATS data using initial results from the WAVE project. The HSRL retrieval algorithms developed for ACATS have direct application to future spaceborne missions such as the Cloud-Aerosol Transport System (CATS) to be installed on the International Space Station (ISS). Furthermore, the direct extinction and particle wind velocity retrieved from the ACATS data can be used for science applications such 27 as dust or smoke transport and convective outflow in anvil cirrus clouds.

  14. Case Study of the Use of the Transportation Algorithm for School Districting Under Federal Integration Guidelines

    ERIC Educational Resources Information Center

    McDaniel, R. Dale

    1975-01-01

    The problem of complying with federal integration guidelines can be stated as a transportation problem with suitable alterations. This case study demonstrates application of the transportation procedure to school districting under integration guidelines. Data for the analysis were drawn from high school enrollment figures and census data for…

  15. Comparative Study of Multicast Protection Algorithms Using Shared Links in 100GET Transport Network

    NASA Astrophysics Data System (ADS)

    Sulaiman, Samer; Haidine, Abdelfattah; Lehnert, Ralf; Tuerk, Stefan

    In recent years new challenges have emerged in the telecommunications market resulting from the increase of network traffic and strong competition. Because of that, service providers feel constrained to replace expensive and complex IP-routers with a cheap and simple solution which guarantees the requested quality of services (QoS) with low cost. One of these solutions is to use the Ethernet technology as a switching layer, which results in using the cheap Ethernet services (E-Line, E-LAN and E-Tree) and to replace the expensive IP-routers. To achieve this migration step, new algorithms that support the available as well as the future services have to be developed. In this paper, we investigate the multicast protection issue. Three multicast protection algorithms based on the shared capacity between primary and backup solutions are proposed and evaluated. The blocking probability is used to evaluate the performance of the proposed algorithms. The sub-path algorithm resulted in a low blocking probability compared with the other algorithms.

  16. Modeling two-dimensional reactive transport using a Godunov-mixed finite element method

    NASA Astrophysics Data System (ADS)

    James, Andrew I.; Jawitz, James W.

    2007-05-01

    SummaryThe development of a model to simulate transport of materials in variable-depth flows is discussed. The model numerically approximates solutions to the advection-dispersion-reaction equation using a time-splitting technique where the advective, dispersive, and reactive parts of the equation are solved separately. An explicit finite-volume Godunov method is used to approximate the advective part while a hybridized mixed finite element method is used to solve for the dispersive step. A backward Euler method is used to solve the reactive component. Rather than solving each component once at each time step, the advective and reactive steps are fractionally and symmetrically split around the dispersive step, so that half of a reactive and advective step are solved before and after each dispersive step. Since the dispersive step is implicit, but computationally expensive, while the advective step is explicit but has time step constraints, this allows stable and more efficient schemes to be implemented in contrast to non-split or simple time-split algorithms. This technique allows problems with high grid Peclet numbers, such as transport problems with sharp solute fronts, to be solved without oscillations in the solution and with virtually no artificial diffusion. By applying the technique to variable depth flows, a variety of applications to transport and reaction problems in surface water and unconfined aquifers can be undertaken. Numerical results for several non-reactive and reactive transport problems in one- and two-dimensions are presented. Observed convergence rates are up to second-order for these simulations.

  17. Extended algorithm for simulation of light transport in single crystal scintillation detectors for S(T)EM.

    PubMed

    Schauer, Petr

    2007-01-01

    The new extended Monte Carlo (MC) simulation method for photon transport in S(T)EM back scattered electron (BSE) scintillation detection systems of various shapes is presented in this paper. The method makes use of the random generation of photon emission from a scintillator luminescent centre and describes the trajectory of photons and the efficiency of their transport toward the photocathode of the photomultiplier tube. The paper explains a new algorithm for determining the position of interaction of the photon with the surface of the single crystal scintillator or of the light guide with nearly arbitrary shapes. Some examples of the utilization of the simulation method are also included, and conclusions for very simple edge-guided signal (EGS) scintillation detection systems made. The computer optimized design of the BSE scintillation detector for the S 4000 Hitachi SEM was chosen to demonstrate the capability of this MC simulation method. PMID:17957744

  18. Algorithm design for automated transportation photo enforcement camera image and video quality diagnostic check modules

    NASA Astrophysics Data System (ADS)

    Raghavan, Ajay; Saha, Bhaskar

    2013-03-01

    Photo enforcement devices for traffic rules such as red lights, toll, stops, and speed limits are increasingly being deployed in cities and counties around the world to ensure smooth traffic flow and public safety. These are typically unattended fielded systems, and so it is important to periodically check them for potential image/video quality problems that might interfere with their intended functionality. There is interest in automating such checks to reduce the operational overhead and human error involved in manually checking large camera device fleets. Examples of problems affecting such camera devices include exposure issues, focus drifts, obstructions, misalignment, download errors, and motion blur. Furthermore, in some cases, in addition to the sub-algorithms for individual problems, one also has to carefully design the overall algorithm and logic to check for and accurately classifying these individual problems. Some of these issues can occur in tandem or have the potential to be confused for each other by automated algorithms. Examples include camera misalignment that can cause some scene elements to go out of focus for wide-area scenes or download errors that can be misinterpreted as an obstruction. Therefore, the sequence in which the sub-algorithms are utilized is also important. This paper presents an overview of these problems along with no-reference and reduced reference image and video quality solutions to detect and classify such faults.

  19. Development of sub-daily erosion and sediment transport algorithms in SWAT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    New Soil and Water Assessment Tool (SWAT) algorithms for simulation of stormwater best management practices (BMPs) such as detention basins, wet ponds, sedimentation filtration ponds, and retention irrigation systems are under development for modeling small/urban watersheds. Modeling stormwater BMPs...

  20. A Petroleum Vapor Intrusion Model Involving Upward Advective Soil Gas Flow Due to Methane Generation.

    PubMed

    Yao, Yijun; Wu, Yun; Wang, Yue; Verginelli, Iason; Zeng, Tian; Suuberg, Eric M; Jiang, Lin; Wen, Yuezhong; Ma, Jie

    2015-10-01

    At petroleum vapor intrusion (PVI) sites at which there is significant methane generation, upward advective soil gas transport may be observed. To evaluate the health and explosion risks that may exist under such scenarios, a one-dimensional analytical model describing these processes is introduced in this study. This new model accounts for both advective and diffusive transport in soil gas and couples this with a piecewise first-order aerobic biodegradation model, limited by oxygen availability. The predicted results from the new model are shown to be in good agreement with the simulation results obtained from a three-dimensional numerical model. These results suggest that this analytical model is suitable for describing cases involving open ground surface beyond the foundation edge, serving as the primary oxygen source. This new analytical model indicates that the major contribution of upward advection to indoor air concentration could be limited to the increase of soil gas entry rate, since the oxygen in soil might already be depleted owing to the associated high methane source vapor concentration. PMID:26322369

  1. Evaluating two numerical advection schemes in HYCOM for eddy-resolving modelling of the Agulhas Current

    NASA Astrophysics Data System (ADS)

    Backeberg, B. C.; Bertino, L.; Johannessen, J. A.

    2009-06-01

    A 4th order advection scheme is applied in a nested eddy-resolving Hybrid Coordinate Ocean Model (HYCOM) of the greater Agulhas Current system for the purpose of testing advanced numerics as a means for improving the model simulation for eventual operational implementation. Model validation techniques comparing sea surface height variations, sea level skewness and variogram analyses to satellite altimetry measurements quantify that generally the 4th order advection scheme improves the realism of the model simulation. The most striking improvement over the standard 2nd order momentum advection scheme, is that the southern Agulhas Current is simulated as a well-defined meandering current, rather than a train of successive eddies. A better vertical structure and stronger poleward transports in the Agulhas Current core contribute toward a better southwestward penetration of the current, and its temperature field, implying a stronger Indo-Atlantic inter-ocean exchange. It is found that the transport, and hence this exchange, is sensitive to the occurrences of mesoscale features originating upstream in the Mozambique Channel and southern East Madagascar Current, and that the improved HYCOM simulation is well suited for further studies of these inter-actions.

  2. Evaluating two numerical advection schemes in HYCOM for eddy-resolving modelling of the Agulhas Current

    NASA Astrophysics Data System (ADS)

    Backeberg, B. C.; Bertino, L.; Johannessen, J. A.

    2009-02-01

    A 4th order advection scheme is applied in a nested eddy-resolving Hybrid Coordinate Ocean Model (HYCOM) of the greater Agulhas Current system for the purpose of testing advanced numerics as a means for improving the model simulation for eventual operational implementation. Model validation techniques comparing sea surface height variations, sea level skewness and variogram analyses to satellite altimetry measurements quantify that generally the 4th order advection scheme improves the realism of the model simulation. The most striking improvement over the standard 2nd order momentum advection scheme, is that the Southern Agulhas Current is simulated as a well-defined meandering current, rather than a train of successive eddies. A better vertical structure and stronger poleward transports in the Agulhas Current core contribute toward a better southwestward penetration of the current, and its temperature field, implying a stronger Indo-Atlantic inter-ocean exchange. It is found that the transport, and hence this exchange, is sensitive to the occurrences of mesoscale features originating upstream in the Mozambique Channel and Southern East Madagascar Current, and that the improved HYCOM simulation is well suited for further studies of these inter-actions.

  3. A deterministic Lagrangian particle separation-based method for advective-diffusion problems

    NASA Astrophysics Data System (ADS)

    Wong, Ken T. M.; Lee, Joseph H. W.; Choi, K. W.

    2008-12-01

    A simple and robust Lagrangian particle scheme is proposed to solve the advective-diffusion transport problem. The scheme is based on relative diffusion concepts and simulates diffusion by regulating particle separation. This new approach generates a deterministic result and requires far less number of particles than the random walk method. For the advection process, particles are simply moved according to their velocity. The general scheme is mass conservative and is free from numerical diffusion. It can be applied to a wide variety of advective-diffusion problems, but is particularly suited for ecological and water quality modelling when definition of particle attributes (e.g., cell status for modelling algal blooms or red tides) is a necessity. The basic derivation, numerical stability and practical implementation of the NEighborhood Separation Technique (NEST) are presented. The accuracy of the method is demonstrated through a series of test cases which embrace realistic features of coastal environmental transport problems. Two field application examples on the tidal flushing of a fish farm and the dynamics of vertically migrating marine algae are also presented.

  4. A comparison of transport algorithms for premixed, laminar steady state flames

    NASA Technical Reports Server (NTRS)

    Coffee, T. P.; Heimerl, J. M.

    1980-01-01

    The effects of different methods of approximating multispecies transport phenomena in models of premixed, laminar, steady state flames were studied. Five approximation methods that span a wide range of computational complexity were developed. Identical data for individual species properties were used for each method. Each approximation method is employed in the numerical solution of a set of five H2-02-N2 flames. For each flame the computed species and temperature profiles, as well as the computed flame speeds, are found to be very nearly independent of the approximation method used. This does not indicate that transport phenomena are unimportant, but rather that the selection of the input values for the individual species transport properties is more important than the selection of the method used to approximate the multispecies transport. Based on these results, a sixth approximation method was developed that is computationally efficient and provides results extremely close to the most sophisticated and precise method used.

  5. Chaotic advection, diffusion, and reactions in open flows

    SciTech Connect

    Tel, Tamas; Karolyi, Gyoergy; Pentek, Aron; Scheuring, Istvan; Toroczkai, Zoltan; Grebogi, Celso; Kadtke, James

    2000-03-01

    We review and generalize recent results on advection of particles in open time-periodic hydrodynamical flows. First, the problem of passive advection is considered, and its fractal and chaotic nature is pointed out. Next, we study the effect of weak molecular diffusion or randomness of the flow. Finally, we investigate the influence of passive advection on chemical or biological activity superimposed on open flows. The nondiffusive approach is shown to carry some features of a weak diffusion, due to the finiteness of the reaction range or reaction velocity. (c) 2000 American Institute of Physics.

  6. The cause of advective slowdown of tracer pebbles in rivers: Implementation of Exner-Based Master Equation for coevolving streamwise and vertical dispersion

    NASA Astrophysics Data System (ADS)

    Pelosi, A.; Schumer, R.; Parker, G.; Ferguson, R. I.

    2016-03-01

    Tracer pebbles are often used to study bed load transport processes in gravel bed rivers. Models have been proposed for their downstream dispersion, and also for vertical dispersion, but not for the combined effects of downstream and vertical movement. Here we use the Exner-Based Master Equation to characterize the transient coevolution of streamwise and vertical advection-diffusion of tracer pebbles under equilibrium transport conditions (no net aggradation or degradation). The coevolution of streamwise and vertical dispersion gives rise to behavior that can differ markedly from that associated with purely streamwise processes with no vertical exchange. One example is streamwise advective slowdown. Particles that are advected downward into zones where the probability of reentrainment becomes asymptotically small are essentially trapped and can no longer participate in streamwise advection. As a result, the mean streamwise velocity of the tracer plume declines in time. Qualitative and quantitative comparisons with two field experiments show encouraging agreement despite the simplified boundary conditions in the model.

  7. Scyphozoa in the Bornholm Basin (central Baltic Sea) The role of advection

    NASA Astrophysics Data System (ADS)

    Barz, Kristina; Hinrichsen, Hans-Harald; Hirche, Hans-Jürgen

    2006-04-01

    The usual absence of ephyrae and late appearance of medusae of the Scyphozoa Aurelia aurita and Cyanea capillata in the Bornholm Basin (BB; central Baltic Sea) indicate that these species are not strobilating in the region and their presence depends on advection. To study their potential origin we compared drift from historically known strobilation areas derived from a circulation model with spatial distributions observed during 19 cruises in the BB during 2002 and 2003. The model results are in good accordance with the field observations. According to the model results inter-annual differences in the timing of first appearance and life stage at appearance of A. aurita were clearly related to differences in the hydrodynamic regime during the investigation periods. During the stagnation regime in 2002 young medusae occurred first in June in the BB. In contrast, in 2003 fast transport due to several inflow events advected ephyrae released between January and March in the western Baltic already in April to the BB. Although the Gullmar Fjord (western Sweden) is the nearest known strobilation area for C. capillata, the model did not support advection from there in numbers explaining the occurrence of this species in the BB in 2002 and 2003. If the model works adequately in this regions we have to assume that the Gullmar Fjord is not a main source region of C. capillata in the BB, but other strobilation areas in the Kattegat or the North Sea appear more important. Our results imply that advection and inflow events are critical for the occurrence and distribution of early stages of jellyfish in the central Baltic Sea. They demonstrate the potential of circulation models as tools to study the effect of long-range transport on the spatial composition of these organisms.

  8. Computer Modeling of Sand Transport on Mars Using a Compart-Mentalized Fluids Algorithm (CFA)

    NASA Technical Reports Server (NTRS)

    Marshall, J.; Stratton, D.

    1999-01-01

    It has been postulated that aeolian transport on Mars may be significantly different from that on Earth. From laboratory experiments simulating martian grain transport [2], it has been observed that (saltating) grains striking the bed can cause hundreds of secondary reptation trajectories when impact occurs at speeds postulated for Mars. Some of the ballistically induced trajectories "die ouf' and effectively join the ranks on the creep population that is merely nudged along by impact. Many of the induced reptation trajectories, however, are sufficiently high for the grains to become part of the saltation load (it is irrelevant to the boundary layer how a grain attained its initial lift force). When these grains, in turn, strike the surface, they too are capable of inducing more reptating grains. This cascading effect has been discussed in connection with terrestrial aeolian transport in an attempt to dispel the notion that sand motion is divisible only into creep and saltation loads. On Earth, only a few grains are splashed by impact. On Mars, it may be hundreds. We developed a computer model to address this phenomenon because there are some important ramifications: First, this ratio may mean that martian aeolian transport is dominated by reptation flux rather than saltation. On Earth, the flux would be a roughly balanced mixture between reptation/creep and saltation. On Venus, there would be no transport other than by saltation. In other words, an understanding of planetary aeolian processes may not be necessarily understood by extrapolating from the "Earth case", with only gravity and atmospheric density/viscosity being considered as variables. Second, the reptation flux on Mars may be self sustaining, so that little input is required by the wind once transport has been initiated. The number of grains saturating the boundary layer near the bed may mean that average grain speed on Mars might conceivably be less than that on Earth. This would say much for models

  9. Burgers turbulence and passive random advection

    NASA Astrophysics Data System (ADS)

    Boldyrev, Stanislav Anatolievich

    1999-10-01

    , and the diffusivity is neglected. These considerations illustrate that even with simple statistics of the velocity field, the statistics of advected quantities are nontrivial due to nonlinear interactions of different spatial directions. The last Chapter 5 summarizes the results and discusses future directions of research.

  10. Solving turbulent diffusion flame in cylindrical frame applying an improved advective kinetics scheme

    NASA Astrophysics Data System (ADS)

    Darbandi, Masoud; Ghafourizadeh, Majid

    2015-12-01

    In this work, we derive a few new advective flux approximation expressions, apply them in a hybrid finite-volume-element (FVE) formulation, and solve the turbulent reacting flow governing equations in the cylindrical frame. To derive these advective-kinetic-based expressions, we benefit from the advantages of a physical influence scheme (PIS) basically, extend it to the cylindrical frame suitably, and approximate the required advective flux terms at the cell faces more accurately. The present numerical scheme not only respects the physics of flow correctly but also resolves the pressure-velocity coupling problem automatically. We also suggest a bi-implicit algorithm to solve the set of coupled turbulent reacting flow governing equations, in which the turbulence and chemistry governing equations are solved simultaneously. To evaluate the accuracy of new derived FVE-PIS expressions, we compare the current solutions with other available numerical solutions and experimental data. The comparisons show that the new derived expressions provide some more advantages over the past numerical approaches in solving turbulent diffusion flame in the cylindrical frame. Indeed, the current method and formulations can be used to solve and analyze the turbulent diffusion flames in the cylindrical coordinates very reliably.

  11. Anomalous scaling of a scalar field advected by turbulence

    SciTech Connect

    Kraichnan, R.H.

    1995-12-31

    Recent work leading to deduction of anomalous scaling exponents for the inertial range of an advected passive field from the equations of motion is reviewed. Implications for other turbulence problems are discussed.

  12. A hybrid approach to the neutron transport K-eigenvalue problem using NDA-based algorithms

    SciTech Connect

    Willert, J. A.; Kelley, C. T.; Knoll, D. A.; Park, H.

    2013-07-01

    In order to provide more physically accurate solutions to the neutron transport equation it has become increasingly popular to use Monte Carlo simulation to model nuclear reactor dynamics. These Monte Carlo methods can be extremely expensive, so we turn to a class of methods known as hybrid methods, which combine known deterministic and stochastic techniques to solve the transport equation. In our work, we show that we can simulate the action of a transport sweep using a Monte Carlo simulation in order to solve the k-eigenvalue problem. We'll accelerate the solution using nonlinear diffusion acceleration (NDA) as in [1,2]. Our work extends the results in [1] to use Monte Carlo simulation as the high-order solver. (authors)

  13. Conditions and processes affecting radionuclide transport

    USGS Publications Warehouse

    Simmons, Ardyth M.; Neymark, Leonid A.

    2012-01-01

    Understanding of unsaturated-zone transport is based on laboratory and field-scale experiments. Fractures provide advective transport pathways. Sorption and matrix diffusion may contribute to retardation of radionuclides. Conversely, sorption onto mobile colloids may enhance radionuclide transport.

  14. A spatial SIS model in advective heterogeneous environments

    NASA Astrophysics Data System (ADS)

    Cui, Renhao; Lou, Yuan

    2016-09-01

    We study the effects of diffusion and advection for a susceptible-infected-susceptible epidemic reaction-diffusion model in heterogeneous environments. The definition of the basic reproduction number R0 is given. If R0 < 1, the unique disease-free equilibrium (DFE) is globally asymptotically stable. Asymptotic behaviors of R0 for advection rate and mobility of the infected individuals (denoted by dI) are established, and the existence of the endemic equilibrium when R0 > 1 is studied. The effects of diffusion and advection rates on the stability of the DFE are further investigated. Among other things, we find that if the habitat is a low-risk domain, there may exist one critical value for the advection rate, under which the DFE changes its stability at least twice as dI varies from zero to infinity, while the DFE is unstable for any dI when the advection rate is larger than the critical value. These results are in strong contrast with the case of no advection, where the DFE changes its stability at most once as dI varies from zero to infinity.

  15. Gas-phase diffusion in porous media: Evaluation of an advective- dispersive formulation and the dusty-gas model including comparison to data for binary mixtures

    SciTech Connect

    Webb, S.W.

    1996-05-01

    Two models for gas-phase diffusion and advection in porous media, the Advective-Dispersive Model (ADM) and the Dusty-Gas Model (DGM), are reviewed. The ADM, which is more widely used, is based on a linear addition of advection calculated by Darcy`s Law and ordinary diffusion using Fick`s Law. Knudsen diffusion is often included through the use of a Klinkenberg factor for advection, while the effect of a porous medium on the diffusion process is through a porosity-tortuosity-gas saturation multiplier. Another, more comprehensive approach for gas-phase transport in porous media has been formulated by Evans and Mason, and is referred to as the Dusty- Gas Model (DGM). This model applies the kinetic theory of gases to the gaseous components and the porous media (or ``dust``) to develop an approach for combined transport due to ordinary and Knudsen diffusion and advection including porous medium effects. While these two models both consider advection and diffusion, the formulations are considerably different, especially for ordinary diffusion. The various components of flow (advection and diffusion) are compared for both models. Results from these two models are compared to isothermal experimental data for He-Ar gas diffusion in a low-permeability graphite. Air-water vapor comparisons have also been performed, although data are not available, for the low-permeability graphite system used for the helium-argon data. Radial and linear air-water heat pipes involving heat, advection, capillary transport, and diffusion under nonisothermal conditions have also been considered.

  16. Linear-scaling source-sink algorithm for simulating time-resolved quantum transport and superconductivity

    NASA Astrophysics Data System (ADS)

    Weston, Joseph; Waintal, Xavier

    2016-04-01

    We report on a "source-sink" algorithm which allows one to calculate time-resolved physical quantities from a general nanoelectronic quantum system (described by an arbitrary time-dependent quadratic Hamiltonian) connected to infinite electrodes. Although mathematically equivalent to the nonequilibrium Green's function formalism, the approach is based on the scattering wave functions of the system. It amounts to solving a set of generalized Schrödinger equations that include an additional "source" term (coming from the time-dependent perturbation) and an absorbing "sink" term (the electrodes). The algorithm execution time scales linearly with both system size and simulation time, allowing one to simulate large systems (currently around 106 degrees of freedom) and/or large times (currently around 105 times the smallest time scale of the system). As an application we calculate the current-voltage characteristics of a Josephson junction for both short and long junctions, and recover the multiple Andreev reflection physics. We also discuss two intrinsically time-dependent situations: the relaxation time of a Josephson junction after a quench of the voltage bias, and the propagation of voltage pulses through a Josephson junction. In the case of a ballistic, long Josephson junction, we predict that a fast voltage pulse creates an oscillatory current whose frequency is controlled by the Thouless energy of the normal part. A similar effect is found for short junctions; a voltage pulse produces an oscillating current which, in the absence of electromagnetic environment, does not relax.

  17. A numerical algorithm suggested by problems of transport in periodic media - The matrix case.

    NASA Technical Reports Server (NTRS)

    Allen, R. C., Jr.; Burgmeier, J. W.; Mundorff, P.; Wing, G. M.

    1972-01-01

    Extension of Allen and Wing's (1970) previous work on problems of transport in periodic media to the matrix case. A method in the form of a complete set of equations is presented that may be used without any further analytical work by investigators interested in computing solutions to problems of the type the method is designed to handle. All the formulas have been checked out numerically, and their effectiveness is demonstrated by numerical examples.

  18. Modulated point-vortex pairs on a rotating sphere: Dynamics and chaotic advection

    NASA Astrophysics Data System (ADS)

    Drótos, Gábor; Tél, Tamás; Kovács, Gergely

    2013-06-01

    The dynamics of modulated point-vortex pairs is investigated on a rotating sphere, where modulation is chosen to reflect the conservation of angular momentum (potential vorticity). For sufficiently close vortices (dipoles) the trajectories of their center-of-mass are shown to correspond to those of a point particle moving freely on a rotating sphere. For finite size vortex pairs, a qualitative similarity to the geodesic dynamics is found. The advection dynamics generated by vortex pairs on a rotating sphere is found to be chaotic. In the short time dynamics we point out a transition from closed to open chaotic advection, which implies that the transport properties of the flow might drastically be altered by changing the initial conditions of the pair on the sphere. Due to spherical topology, for long times, even the open advection patterns are found to gradually cross over to that corresponding to a homogeneous closed mixing. This pattern extends along a zonal band, whereas short term closed mixing remains always bounded to the moving pair.

  19. Modulated point-vortex pairs on a rotating sphere: dynamics and chaotic advection.

    PubMed

    Drótos, Gábor; Tél, Tamás; Kovács, Gergely

    2013-06-01

    The dynamics of modulated point-vortex pairs is investigated on a rotating sphere, where modulation is chosen to reflect the conservation of angular momentum (potential vorticity). For sufficiently close vortices (dipoles) the trajectories of their center-of-mass are shown to correspond to those of a point particle moving freely on a rotating sphere. For finite size vortex pairs, a qualitative similarity to the geodesic dynamics is found. The advection dynamics generated by vortex pairs on a rotating sphere is found to be chaotic. In the short time dynamics we point out a transition from closed to open chaotic advection, which implies that the transport properties of the flow might drastically be altered by changing the initial conditions of the pair on the sphere. Due to spherical topology, for long times, even the open advection patterns are found to gradually cross over to that corresponding to a homogeneous closed mixing. This pattern extends along a zonal band, whereas short term closed mixing remains always bounded to the moving pair. PMID:23848782

  20. Advective hydrogel membrane chromatography for monoclonal antibody purification in bioprocessing.

    PubMed

    Hou, Ying; Brower, Mark; Pollard, David; Kanani, Dharmesh; Jacquemart, Renaud; Kachuik, Bradley; Stout, James

    2015-01-01

    Protein A chromatography is widely employed for the capture and purification of monoclonal antibodies (mAbs). Because of the high cost of protein A resins, there is a significant economic driving force to seek new downstream processing strategies. Membrane chromatography has emerged as a promising alternative to conventional resin based column chromatography. However, to date, the application has been limited to mostly ion exchange flow through (FT) mode. Recently, significant advances in Natrix hydrogel membrane has resulted in increased dynamic binding capacities for proteins, which makes membrane chromatography much more attractive for bind/elute operations. The dominantly advective mass transport property of the hydrogel membrane has also enabled Natrix membrane to be run at faster volumetric flow rates with high dynamic binding capacities. In this work, the potential of using Natrix weak cation exchange membrane as a mAb capture step is assessed. A series of cycle studies was also performed in the pilot scale device (> 30 cycles) with good reproducibility in terms of yield and product purities, suggesting potential for improved manufacturing flexibility and productivity. In addition, anion exchange (AEX) hydrogel membranes were also evaluated with multiple mAb programs in FT mode. Significantly higher binding capacity for impurities (support mAb loads up to 10Kg/L) and 40X faster processing speed were observed compared with traditional AEX column chromatography. A proposed protein A free mAb purification process platform could meet the demand of a downstream purification process with high purity, yield, and throughput. PMID:26018631

  1. Parallelization of the Red-Black Algorithm on Solving the Second-Order PN Transport Equation with the Hybrid Finite Element Method

    SciTech Connect

    Yaqi Wang; Cristian Rabiti; Giuseppe Palmiotti

    2011-06-01

    The Red-Black algorithm has been successfully applied on solving the second-order parity transport equation with the PN approximation in angle and the Hybrid Finite Element Method (HFEM) in space, i.e., the Variational Nodal Method (VNM) [1,2,3,4,5]. Any transport solving techniques, including the Red-Black algorithm, need to be parallelized in order to take the advantage of the development of supercomputers with multiple processors for the advanced modeling and simulation. To our knowledge, an attempt [6] was done to parallelize it, but it was devoted only to the z axis plans in three-dimensional calculations. General parallelization of the Red-Black algorithm with the spatial domain decomposition has not been reported in the literature. In this summary, we present our implementation of the parallelization of the Red-Black algorithm and its efficiency results.

  2. SIMULATING MAGNETOHYDRODYNAMICAL FLOW WITH CONSTRAINED TRANSPORT AND ADAPTIVE MESH REFINEMENT: ALGORITHMS AND TESTS OF THE AstroBEAR CODE

    SciTech Connect

    Cunningham, Andrew J.; Frank, Adam; Varniere, Peggy; Mitran, Sorin; Jones, Thomas W.

    2009-06-15

    A description is given of the algorithms implemented in the AstroBEAR adaptive mesh-refinement code for ideal magnetohydrodynamics. The code provides several high-resolution shock-capturing schemes which are constructed to maintain conserved quantities of the flow in a finite-volume sense. Divergence-free magnetic field topologies are maintained to machine precision by collating the components of the magnetic field on a cell-interface staggered grid and utilizing the constrained transport approach for integrating the induction equations. The maintenance of magnetic field topologies on adaptive grids is achieved using prolongation and restriction operators which preserve the divergence and curl of the magnetic field across collocated grids of different resolutions. The robustness and correctness of the code is demonstrated by comparing the numerical solution of various tests with analytical solutions or previously published numerical solutions obtained by other codes.

  3. Gradient flipping algorithm: introducing non-convex constraints in wavefront reconstructions with the transport of intensity equation.

    PubMed

    Parvizi, A; Van den Broek, W; Koch, C T

    2016-04-18

    The transport of intensity equation (TIE) is widely applied for recovering wave fronts from an intensity measurement and a measurement of its variation along the direction of propagation. In order to get around the problem of non-uniqueness and ill-conditionedness of the solution of the TIE in the very common case of unspecified boundary conditions or noisy data, additional constraints to the solution are necessary. Although from a numerical optimization point of view, convex constraint as imposed to by total variation minimization is preferable, we will show that in many cases non-convex constraints are necessary to overcome the low-frequency artifacts so typical for convex constraints. We will provide simulated and experimental examples that demonstrate the superiority of solutions to the TIE obtained by our recently introduced gradient flipping algorithm over a total variation constrained solution. PMID:27137272

  4. Advective Removal of Intraparticle Uranium from Contaminated Vadose Zone Sediments, Hanford, USA

    SciTech Connect

    Ilton, Eugene S.; Qafoku, Nikolla; Liu, Chongxuan; Moore, D. A.; Zachara, John M.

    2008-03-01

    A column study on U contaminated vadose zone sediments from the Hanford Site, WA, was performed in order to aid the development of a model for predicting U(VI) release rates under a dynamic flow regime and for variable geochemical conditions. The sediments of interest are adjacent to and below tank BX-102, part of the BX tank farm that contained high level liquid radioactive waste. Two sediments, with different U(VI) loadings and intraparticle large fracture vs. smaller fracture ratios, were reacted with three different solutions. The primary reservoir for U(VI) appears to be a micron-sized nanocrystalline Na-U-Si phase, possibly Na-boltwoodite, that nucleated and grew on plagioclase grains that line fractures within sand-sized granitic clasts. The solutions were all calcite saturated and in equilibrium with atmospheric CO2, where one solution was simply DI-water, the second was a synthetic ground water (SGW) with elevated Na, and the third was the same SGW but with both elevated Na and Si. The latter two solutions were employed, in part, to test the effect of saturation state on U(VI) release. For both sediments and all three electrolytes, there was an initial rapid release of U(VI) to the advecting solution followed by a plateau of low U(VI) concentration. U(VI) effluent concentration increased during subsequent stop flow (SF) events. The electrolytes with elevated Na and Si appreciably depressed U(VI) concentrations relative to DI water. The effluent data for both sediments and all three electrolytes was simulated reasonably well by a three domain model (the advecting fluid, fractures, and matrix) that coupled U(VI) dissolution rates, intraparticle U(VI) diffusion, and interparticle advective transport of U(VI); where key transport and dissolution processes had been parameterized in previous batch studies. For the calcite-saturated DI-water, U(VI) concentrations in the effluent remained far below saturation with respect to Na-boltwoodite and release of U(VI) to

  5. Advanced Transport Delay Compensation Algorithms: Results of Delay Measurement and Piloted Performance Tests

    NASA Technical Reports Server (NTRS)

    Guo, Liwen; Cardullo, Frank M.; Kelly, Lon C.

    2007-01-01

    This report summarizes the results of delay measurement and piloted performance tests that were conducted to assess the effectiveness of the adaptive compensator and the state space compensator for alleviating the phase distortion of transport delay in the visual system in the VMS at the NASA Langley Research Center. Piloted simulation tests were conducted to assess the effectiveness of two novel compensators in comparison to the McFarland predictor and the baseline system with no compensation. Thirteen pilots with heterogeneous flight experience executed straight-in and offset approaches, at various delay configurations, on a flight simulator where different predictors were applied to compensate for transport delay. The glideslope and touchdown errors, power spectral density of the pilot control inputs, NASA Task Load Index, and Cooper-Harper rating of the handling qualities were employed for the analyses. The overall analyses show that the adaptive predictor results in slightly poorer compensation for short added delay (up to 48 ms) and better compensation for long added delay (up to 192 ms) than the McFarland compensator. The analyses also show that the state space predictor is fairly superior for short delay and significantly superior for long delay than the McFarland compensator.

  6. Adaptation of flux-corrected transport algorithms for modeling dusty flows

    NASA Astrophysics Data System (ADS)

    Fry, M. A.; Book, D. L.

    Blast wave phenomena include reactive and two phase flows resulting from the motion of chemical explosion products. When the blast wave interacts with structural surfaces (external discontinuities), multiple reflections and refractions occur from both external and internal discontinuities. The most recent version of the Flux Corrected Transport (FCT) convective-equation solver has been used both in one and two dimensions to simulate chemical explosive blast waves reflecting from planar structures for yields ranging from 8 lb to 600 tons. One can relate the strength of the second reflected peak to the sharpness of the contact discontinuity, and thus measure the capability to predict all the salient features of the blast wave. The flow patterns obtained reveal four different vortices, two forward and two reversed. Their effect on the notion of tracer particles has been studied in order to determine the motion of (1) HE detonation products and (2) dust scoured up from the ground.

  7. The role of advection and diffusion in waste disposal by sea urchin embryos

    NASA Astrophysics Data System (ADS)

    Clark, Aaron; Licata, Nicholas

    2014-03-01

    We determine the first passage probability for the absorption of waste molecules released from the microvilli of sea urchin embryos. We calculate a perturbative solution of the advection-diffusion equation for a linear shear profile similar to the fluid environment which the embryos inhabit. Rapid rotation of the embryo results in a concentration boundary layer of comparable thickness to the length of the microvilli. A comparison of the results to the regime of diffusion limited transport indicates that fluid flow is advantageous for efficient waste disposal.

  8. Ant colony algorithm implementation in electron and photon Monte Carlo transport: Application to the commissioning of radiosurgery photon beams

    SciTech Connect

    Garcia-Pareja, S.; Galan, P.; Manzano, F.; Brualla, L.; Lallena, A. M.

    2010-07-15

    Purpose: In this work, the authors describe an approach which has been developed to drive the application of different variance-reduction techniques to the Monte Carlo simulation of photon and electron transport in clinical accelerators. Methods: The new approach considers the following techniques: Russian roulette, splitting, a modified version of the directional bremsstrahlung splitting, and the azimuthal particle redistribution. Their application is controlled by an ant colony algorithm based on an importance map. Results: The procedure has been applied to radiosurgery beams. Specifically, the authors have calculated depth-dose profiles, off-axis ratios, and output factors, quantities usually considered in the commissioning of these beams. The agreement between Monte Carlo results and the corresponding measurements is within {approx}3%/0.3 mm for the central axis percentage depth dose and the dose profiles. The importance map generated in the calculation can be used to discuss simulation details in the different parts of the geometry in a simple way. The simulation CPU times are comparable to those needed within other approaches common in this field. Conclusions: The new approach is competitive with those previously used in this kind of problems (PSF generation or source models) and has some practical advantages that make it to be a good tool to simulate the radiation transport in problems where the quantities of interest are difficult to obtain because of low statistics.

  9. Clay with Desiccation Cracks is an Advection Dominated Environment

    NASA Astrophysics Data System (ADS)

    Baram, S.; Kurtzman, D.; Sher, Y.; Ronen, Z.; Dahan, O.

    2012-04-01

    Heavy clay sediments are regarded "safe" from the hydrological point of view due to their low hydraulic conductivities. However, the formation of desiccation cracks in dispersive clays may dramatically change their bulk hydraulic properties. The impact of desiccation cracks on water percolation, dissolved salts and contaminants transport and redox related reactions (microbial ammonium oxidation and denitrification) were investigated in 6 -12 m clay layer near a diary farm waste lagoon. The study implemented unique vadose-zone monitoring systems that enable in-situ measurements of the temporal variation of the sediment's water content along with frequent sampling of the sediment's pore water along the entire vadose zone (> 30 m). Results from four years of continuous measurements showed quick rises in sediment water content following rain events and temporal wastewater overflows. The percolation pattern indicated dominance of preferential flow through a desiccation-cracks network crossing the entire clay sediment layer. High water-propagation velocities (0.4 - 23.6 m h-1) were observed, indicating that the desiccation-crack network remains open and serves as a preferential flow pathway year-round, even at high sediment water content (~0.50 m3 m-3). The rapid percolation bypassed the most bio-geo-active parts of the soil, transporting even highly sorptive contaminants (testosterone and estrogen) in to the deep sections of the vadose zone, accelerating the underlying groundwater contamination. The ammonium and nitrate concentrations in the vadose zone and the high number of nitrifying and denitrifying bacteria (~108 gene copies gdry-sediemt-1, each) found in the sediment indicated that the entire vadose zone is aerated even at high water content conditions (~0.55 m3 m-3). The dissolved salts concentration in the pore-water and the δ2H-H2O and δ18O-H2O values of the pore-water substantially increased with depth (becoming less depleted) in the clay sediment

  10. Advecting Procedural Textures for 2D Flow Animation

    NASA Technical Reports Server (NTRS)

    Kao, David; Pang, Alex; Moran, Pat (Technical Monitor)

    2001-01-01

    This paper proposes the use of specially generated 3D procedural textures for visualizing steady state 2D flow fields. We use the flow field to advect and animate the texture over time. However, using standard texture advection techniques and arbitrary textures will introduce some undesirable effects such as: (a) expanding texture from a critical source point, (b) streaking pattern from the boundary of the flowfield, (c) crowding of advected textures near an attracting spiral or sink, and (d) absent or lack of textures in some regions of the flow. This paper proposes a number of strategies to solve these problems. We demonstrate how the technique works using both synthetic data and computational fluid dynamics data.

  11. Fast multigrid solution of the advection problem with closed characteristics

    SciTech Connect

    Yavneh, I.; Venner, C.H.; Brandt, A.

    1996-12-31

    The numerical solution of the advection-diffusion problem in the inviscid limit with closed characteristics is studied as a prelude to an efficient high Reynolds-number flow solver. It is demonstrated by a heuristic analysis and numerical calculations that using upstream discretization with downstream relaxation-ordering and appropriate residual weighting in a simple multigrid V cycle produces an efficient solution process. We also derive upstream finite-difference approximations to the advection operator, whose truncation terms approximate {open_quotes}physical{close_quotes} (Laplacian) viscosity, thus avoiding spurious solutions to the homogeneous problem when the artificial diffusivity dominates the physical viscosity.

  12. Radiation transport algorithms on trans-petaflops supercomputers of different architectures.

    SciTech Connect

    Christopher, Thomas Woods

    2003-08-01

    We seek to understand which supercomputer architecture will be best for supercomputers at the Petaflops scale and beyond. The process we use is to predict the cost and performance of several leading architectures at various years in the future. The basis for predicting the future is an expanded version of Moore's Law called the International Technology Roadmap for Semiconductors (ITRS). We abstract leading supercomputer architectures into chips connected by wires, where the chips and wires have electrical parameters predicted by the ITRS. We then compute the cost of a supercomputer system and the run time on a key problem of interest to the DOE (radiation transport). These calculations are parameterized by the time into the future and the technology expected to be available at that point. We find the new advanced architectures have substantial performance advantages but conventional designs are likely to be less expensive (due to economies of scale). We do not find a universal ''winner'', but instead the right architectural choice is likely to involve non-technical factors such as the availability of capital and how long people are willing to wait for results.

  13. The Sensitivity of Model Ozone to Advective and Photochemical Processes in the High Latitude Winter Lower Stratosphere

    NASA Technical Reports Server (NTRS)

    Douglass, A.; Kawa, S. R.; Einaudi, Franco (Technical Monitor)

    2000-01-01

    Three dimensional chemistry and transport models (CTMs) contain a set of coupled continuity equations which describe the evolution of constituents such as ozone and other minor species which affect ozone. Both advection and photochemical processes contribute to constituent evolution, and a CTM provides a means to evaluate these contributions separately. Such evaluation is particularly useful when both terms are important to the modeled tendency. An example is the ozone tendency in the high latitude winter lower stratosphere, where advection tends to increase ozone, and catalytic processes involving chlorine radicals tend to decrease ozone. The Goddard three dimensional chemistry and transport model uses meteorological fields from the Goddard Earth Observing System Data Assimilation System, thus the modeled ozone evolution may reproduce the observed evolution and provide a test of the model representation of photochemical processes if the transport is shown to be modeled appropriately. We have investigated the model advection further using diabatic trajectory calculations. For long lived constituents such as N2O, the model field for a particular time on a potential temperature surface is compared with a field produced by calculating 15 day back trajectories for a fixed latitude longitude grid, and mapping model N2O at the terminus of the back trajectories onto the initial grid. This provides a quantitative means to evaluate two aspects of the CTM transport: one, the model horizontal gradient between middle latitudes and the polar vortex is compared with the gradient produced using the non-diffusive trajectory calculation; two, the model vertical advection, which is produced by the divergence of the horizontal winds, is compared with the vertical transport expected from diabatic cooling.

  14. Performance Analysis of high-order remap-type advection scheme on icosahedral-hexagonal grid

    NASA Astrophysics Data System (ADS)

    Mittal, Rashmi; Dubey, Sarvesh; Saxena, Vaibhav; Meurdesoif, Yann

    2014-05-01

    A comparative performance analysis on computational cost of second order advection schemes FF-CSLAM (Flux form conservative semi-Lagrangian multi-tracer transport scheme) and it's two simplifications on Icosahedral grid has been presented. Tracer transport is one of the main building blocks in atmospheric models and hence their performance greatly determines the overall performance of the model. FF-CSLAM falls in the category of arbitrary Lagrangian Eulerian (ALE) scheme. It exploits the finite volume formulation and therefore it is inherently conservative. Flux-area through edges are approximated with great circle arcs in an upwind fashion. Bi-quadratic sub-grid scale reconstructions using weighted least-squares method is employed to approximate trace field. Area integrals on the overlapped region of flux-area and static Eulerian meshes are evaluated via line-integrals. A brief description of implementation of FF-CSLAM on icosahedral -hexagonal meshes along with and its numerical accuracy in terms of standard test cases will be presented. A comparative analysis of the computational overhead is necessary to assess the suitability of FF-CSLAM for massively parallel and multi-threading computer architectures in comparison to other advection schemes implemented on icosahedral grids. The main focus of this work is to present the implementation of the shared memory parallelization and to describe the memory access pattern of the numerical scheme. FF-CSLAM is a remap-type advection scheme, thus extra calculation are done in comparison to the other advection schemes. The additional computations are associated with the search required to find the overlap area between the area swept through the edge and the underlining grid. But the experiments shows that the associated computational overhead is minimal for multi-tracer transport. It will be shown that for the Courant Number less than one, FF-CSLAM, the computations are not expensive. Since the grid cells are arranged in

  15. A New 2D-Advection-Diffusion Model Simulating Trace Gas Distributions in the Lowermost Stratosphere

    NASA Astrophysics Data System (ADS)

    Hegglin, M. I.; Brunner, D.; Peter, T.; Wirth, V.; Fischer, H.; Hoor, P.

    2004-12-01

    Tracer distributions in the lowermost stratosphere are affected by both, transport (advective and non-advective) and in situ sources and sinks. They influence ozone photochemistry, radiative forcing, and heating budgets. In-situ measurements of long-lived species during eight measurement campaigns revealed relatively simple behavior of the tracers in the lowermost stratosphere when represented in an equivalent-latitude versus potential temperature framework. We here present a new 2D-advection-diffusion model that simulates the main transport pathways influencing the tracer distributions in the lowermost stratosphere. The model includes slow diabatic descent of aged stratospheric air and vertical and/or horizontal diffusion across the tropopause and within the lowermost stratosphere. The diffusion coefficients used in the model represent the combined effects of different processes with the potential of mixing tropospheric air into the lowermost stratosphere such as breaking Rossby and gravity waves, deep convection penetrating the tropopause, turbulent diffusion, radiatively driven upwelling etc. They were specified by matching model simulations to observed distributions of long-lived trace gases such as CO and N2O obtained during the project SPURT. The seasonally conducted campaigns allow us to study the seasonal dependency of the diffusion coefficients. Despite its simplicity the model yields a surprisingly good description of the small scale features of the measurements and in particular of the observed tracer gradients at the tropopause. The correlation coefficients between modeled and measured trace gas distributions were up to 0.95. Moreover, mixing across isentropes appears to be more important than mixing across surfaces of constant equivalent latitude (or PV). With the aid of the model, the distribution of the fraction of tropospheric air in the lowermost stratosphere can be determined.

  16. An evaluation and intercomparison of four new advection schemes for use in global chemistry models

    NASA Astrophysics Data System (ADS)

    Petersen, Arthur C.; Spee, Edwin J.; van Dop, Han; Hundsdorfer, Willem

    1998-08-01

    The need to use a higher spatial resolution and to include more chemical species in global atmospheric chemistry models has led to a demand for efficient advection schemes with high accuracy. We test four newly developed three-dimensional advection schemes named Mol-rg, Split-u, Split-us, and Split-rg. We compare the new schemes with the existing schemes Slopes and Second Moments, both implemented on a uniform grid. Mol-rg and Split-rg make use of a reduced grid. Split-us is an unconditionally stable scheme on a uniform grid. Two tests are performed with all schemes: a solid-body rotation test and a radon transport test. The radon transport test is performed with the off-line global tracer model TM2. The solid-body rotation test shows that none of the new schemes generates undershoot and overshoot and that all of them are mass conservative. Slopes and Second Moments both generate small undershoot and overshoot at all resolutions. The accuracy of the new and old schemes for rotation of a smooth profile is similar for the horizontal resolutions studied. Since the new schemes are slightly more diffusive than the old schemes, they perform worse for rotation of a cone. The radon test shows that the errors related to the numerical schemes are much smaller than other model errors. The main advantage of the new schemes is that they use 75% and 90% less memory than Slopes and Second Moments, respectively. At horizontal resolutions higher than 5° × 5° Split-us and Split-rg are the most efficient of the schemes in terms of cpu time. The new advection schemes are available through Internet.

  17. Analyzing the evolutionary mechanisms of the Air Transportation System-of-Systems using network theory and machine learning algorithms

    NASA Astrophysics Data System (ADS)

    Kotegawa, Tatsuya

    Complexity in the Air Transportation System (ATS) arises from the intermingling of many independent physical resources, operational paradigms, and stakeholder interests, as well as the dynamic variation of these interactions over time. Currently, trade-offs and cost benefit analyses of new ATS concepts are carried out on system-wide evaluation simulations driven by air traffic forecasts that assume fixed airline routes. However, this does not well reflect reality as airlines regularly add and remove routes. A airline service route network evolution model that projects route addition and removal was created and combined with state-of-the-art air traffic forecast methods to better reflect the dynamic properties of the ATS in system-wide simulations. Guided by a system-of-systems framework, network theory metrics and machine learning algorithms were applied to develop the route network evolution models based on patterns extracted from historical data. Constructing the route addition section of the model posed the greatest challenge due to the large pool of new link candidates compared to the actual number of routes historically added to the network. Of the models explored, algorithms based on logistic regression, random forests, and support vector machines showed best route addition and removal forecast accuracies at approximately 20% and 40%, respectively, when validated with historical data. The combination of network evolution models and a system-wide evaluation tool quantified the impact of airline route network evolution on air traffic delay. The expected delay minutes when considering network evolution increased approximately 5% for a forecasted schedule on 3/19/2020. Performance trade-off studies between several airline route network topologies from the perspectives of passenger travel efficiency, fuel burn, and robustness were also conducted to provide bounds that could serve as targets for ATS transformation efforts. The series of analysis revealed that high

  18. Dynamic typology of hydrothermal systems: competing effects of advection, dispersion and reactivity

    NASA Astrophysics Data System (ADS)

    Dolejs, David

    2016-04-01

    Genetic interpretation hydrothermal systems relies on recognition of (i) hydrothermal fluid source, (ii) fluid migration pathways, and (iii) deposition site identified by hydrothermal alteration and/or mineralization. Frequently, only the last object is of interest or accessible to direct observation, but constraints on the fluid source (volume) and pathways can be obtained from evaluation of the time-integrated fluid flux during hydrothermal event. Successful interpretation of the petrological record, that is, progress of alteration reactions, relies on identification of individual contributions arising from solute advection (to the deposition site), its lateral dispersion, and reaction efficiency. Although these terms are all applicable in a mass-conservation relationship within the framework of the transport theory, they are rarely considered simultaneously and their relative magnitudes evaluated. These phenomena operate on variable length and time scales, and may in turn provide insight into the system dynamics such as flow, diffusion and reaction rates, or continuous vs. episodic behavior of hydrothermal events. In addition, here we demonstrate that they also affect estimate of the net fluid flux, frequently by several orders of magnitude. The extent of alteration and mineralization reactions between the hydrothermal fluid and the host environment is determined by: (i) temperature, pressure or any other gradients across the mineralization site, (ii) magnitude of disequilibrium at inflow to the mineralization site, which is related to physico-chemical gradient between the fluid source and the mineralization site, and (iii) chemical redistribution (dispersion) within the mineralization site. We introduce quantitative mass-transport descriptors - Péclet and Damköhler II numbers - to introduce division into dispersion-dominated, advection-dominated and reaction-constrained systems. Dispersive systems are characterized by lateral solute redistribution, driven by

  19. Advanced Control Algorithms for Compensating the Phase Distortion Due to Transport Delay in Human-Machine Systems

    NASA Technical Reports Server (NTRS)

    Guo, Liwen; Cardullo, Frank M.; Kelly, Lon C.

    2007-01-01

    The desire to create more complex visual scenes in modern flight simulators outpaces recent increases in processor speed. As a result, simulation transport delay remains a problem. New approaches for compensating the transport delay in a flight simulator have been developed and are presented in this report. The lead/lag filter, the McFarland compensator and the Sobiski/Cardullo state space filter are three prominent compensators. The lead/lag filter provides some phase lead, while introducing significant gain distortion in the same frequency interval. The McFarland predictor can compensate for much longer delay and cause smaller gain error in low frequencies than the lead/lag filter, but the gain distortion beyond the design frequency interval is still significant, and it also causes large spikes in prediction. Though, theoretically, the Sobiski/Cardullo predictor, a state space filter, can compensate the longest delay with the least gain distortion among the three, it has remained in laboratory use due to several limitations. The first novel compensator is an adaptive predictor that makes use of the Kalman filter algorithm in a unique manner. In this manner the predictor can accurately provide the desired amount of prediction, while significantly reducing the large spikes caused by the McFarland predictor. Among several simplified online adaptive predictors, this report illustrates mathematically why the stochastic approximation algorithm achieves the best compensation results. A second novel approach employed a reference aircraft dynamics model to implement a state space predictor on a flight simulator. The practical implementation formed the filter state vector from the operator s control input and the aircraft states. The relationship between the reference model and the compensator performance was investigated in great detail, and the best performing reference model was selected for implementation in the final tests. Theoretical analyses of data from offline

  20. Topology preserving advection of implicit interfaces on Cartesian grids

    NASA Astrophysics Data System (ADS)

    Qin, Zhipeng; Delaney, Keegan; Riaz, Amir; Balaras, Elias

    2015-06-01

    Accurate representation of implicit interface topology is important for the numerical computation of two phase flow on Cartesian grids. A new method is proposed for the construction of signed distance function by geometrically projecting interface topology onto the Cartesian grid using a multi-level projection framework. The method involves a stepwise improvement in the approximation to the signed distance function based on pointwise, piecewise and locally smooth reconstructions of the interface. We show that this approach provides accurate representation of the projected interface and its topology on the Cartesian grid, including the distance from the interface and the interface normal and curvature. The projected interface can be in the form of either a connected set of marker particles that evolve with Lagrangian advection, or a discrete set of points associated with an implicit interface that evolves with the advection of a scalar function. The signed distance function obtained with geometric projection is independent of the details of the scaler field, in contrast to the conventional approach where advection and reinitialization cannot be decoupled. As a result, errors introduced by reinitialization do not amplify advection errors, which leads to substantial improvement in both volume conservation and topology representation.

  1. The 'optimum' upwind advection on a triangular mesh

    NASA Technical Reports Server (NTRS)

    Roe, P. L.

    1990-01-01

    For advection schemes based on fluctuation splitting, a design criterion of optimizing the time step leads to linear schemes that coincide with those designed for least truncation error. A further stage of optimizing the time step using a nonlinear positivity criterion, leads to considerable further gains in resolution.

  2. Tidal variability of lateral advection in a coastal plain estuary

    NASA Astrophysics Data System (ADS)

    Basdurak, N. B.; Valle-Levinson, A.

    2013-07-01

    Tidal variability of lateral advection of momentum (vuy, where u and v are along-estuary and lateral flows, respectively, and the subindex indicates differentiation with respect to the cross-estuary direction) was investigated in a coastal plain estuary with observations at Hampton Roads, which is the transition between the James River and Chesapeake Bay. Towed current velocity profiles and hydrographic profiles were captured during 9 expeditions in 2004 and 2005, to determine the intratidal and spatial changes in lateral advection of momentum and its contribution to along-channel flow. Curvature effects and lateral density gradients were important in driving lateral circulation and in modifying intratidal lateral advection of momentum. Lateral advection had the same order of magnitude as the baroclinic pressure gradient. Its contribution to the along-channel momentum balance was greatest during or just after peak flood and weakest at the end of ebb. During peak flood and peak ebb, the spatial distribution of vuy was seaward at the southern (left) side near surface and at the northern side (right) near bed (looking up-estuary), and landward in the rest of the channel. During slack periods the vuy structures were mostly landward. Observations were in good agreement with analytical model results during peak ebb and flood, but inconsistent during slack periods. The discrepancies between model results and field measurements can be attributed to bathymetry-density gradient interactions, which enhanced ebb-to-flood asymmetries in the along-channel and lateral flow.

  3. Improving Electron Transport Simulation in Mesoscopic Systems by Coupling a Classical Monte Carlo Algorithm to a Wigner Function Solver

    NASA Astrophysics Data System (ADS)

    García-García, J.; Martín, F.; Oriols, X.; Suñé, J.

    Because of its high switching speed, low power consumption and reduced complexity to implement a given function, resonant tunneling diodes (RTD's) have been recently recognized as excellent candidates for digital circuit applications [1]. Device modeling and simulation is thus important, not only to understand mesoscopic transport properties, but also to provide guidance in optimal device design and fabrication. Several approaches have been used to this end. Among kinetic models, those based on the non-equilibrium Green function formalism [2] have gained increasing interest due to their ability to incorporate coherent and incoherent interactions in a unified formulation. The Wigner distribution function approach has been also extensively used to study quantum transport in RTD's [3-6]. The main limitations of this formulation are the semiclassical treatment of carrier-phonon interactions by means of the relaxation time approximation and the huge computational burden associated to the self-consistent solution of Liouville and Poisson equations. This has imposed severe limitations on spatial domains, these being too small to succeed in the development of reliable simulation tools. Based on the Wigner function approach, we have developed a simulation tool that allows to extend the simulation domains up to hundreds of nanometers without a significant increase in computer time [7]. This tool is based on the coupling between the Wigner distribution function (quantum Liouville equation) and the Boltzmann transport equation. The former is applied to the active region of the device including the double barrier, where quantum effects are present (quantum window, QW). The latter is solved by means of a Monte Carlo algorithm and applied to the outer regions of the device, where quantum effects are not expected to occur. Since the classical Monte Carlo algorithm is much less time consuming than the discretized version of the Wigner transport equation, we can considerably

  4. Impact of mixing height estimation on heterogeneous terrains with different algorithms and instruments on atmospheric transport models.

    NASA Astrophysics Data System (ADS)

    Biavati, G.; Kretschmer, R.; Gerbig, C.; Feist, D. G.

    2012-04-01

    The retrieval of mixing height [MH] is a common target of several scientific community all over the world. A strong effort is needed to the fact that modeling of MH generally fails introducing strong errors in the estimate of the concentrations of pollutants and green house gasses within the boundary layer. In Europe local meteorological services and international projects are implementing networks of instruments that can provide atmospheric profiles of different quantities. These networks will continuously provide data which could be used to constrain MH values. The current availability of atmospheric profiles of different nature, such as radiosondes, ground based lidar and ceilometers as well as satellites over Europe grant a spatial coverage that allow to estimate the impact of the knowledge of MH on transport models at synoptic scale of quantities as CO2 and CH4 mixing ratios. In this study we apply several algorithms to retrieve MH from different data sources: the ceilometers network installed by the German Weather Service; the data from CALIPSO satellite and all the WMO radio-soundings available over Europe during the IMECC (Infrastructure for Measurements of the European Carbon Cycle) in 2009. The values obtained from the optical instruments are validated using as reference the estimation retrieved by the virtual potential temperature profiles obtained by the radiosondes where co-location occurs and using statistical interpolation to evaluate the estimates from satellite and non co-located stations.. The impact of this estimates of MH on CO2 mixing ratios will be evaluated with the Stochastic Time Inverted Lagrangian Transport model (STILT) driven by WRF meteorology in comparison with in-situ measurements.

  5. Advection, dispersion, and filtration of fine particles within emergent vegetation of the Florida Everglades

    USGS Publications Warehouse

    Huang, Y.H.; Saiers, J.E.; Harvey, J.W.; Noe, G.B.; Mylon, S.

    2008-01-01

    The movement of particulate matter within wetland surface waters affects nutrient cycling, contaminant mobility, and the evolution of the wetland landscape. Despite the importance of particle transport in influencing wetland form and function, there are few data sets that illuminate, in a quantitative way, the transport behavior of particulate matter within surface waters containing emergent vegetation. We report observations from experiments on the transport of 1 ??m latex microspheres at a wetland field site located in Water Conservation Area 3A of the Florida Everglades. The experiments involved line source injections of particles inside two 4.8-m-long surface water flumes constructed within a transition zone between an Eleocharis slough and Cladium jamaicense ridge and within a Cladium jamaicense ridge. We compared the measurements of particle transport to calculations of two-dimensional advection-dispersion model that accounted for a linear increase in water velocities with elevation above the ground surface. The results of this analysis revealed that particle spreading by longitudinal and vertical dispersion was substantially greater in the ridge than within the transition zone and that particle capture by aquatic vegetation lowered surface water particle concentrations and, at least for the timescale of our experiments, could be represented as an irreversible, first-order kinetics process. We found generally good agreement between our field-based estimates of particle dispersion and water velocity and estimates determined from published theory, suggesting that the advective-dispersive transport of particulate matter within complex wetland environments can be approximated on the basis of measurable properties of the flow and aquatic vegetation. Copyright 2008 by the American Geophysical Union.

  6. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in MagLIF-like plasma

    SciTech Connect

    Velikovich, A. L. Giuliani, J. L.; Zalesak, S. T.

    2014-12-15

    The MagLIF approach to inertial confinement fusion involves subsonic/isobaric compression and heating of a DT plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot plasma to the cold liner is dominated by the transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter ω{sub e}τ{sub e} effective diffusion coefficients determining the losses of heat and magnetic flux are both shown to decrease with ω{sub e}τ{sub e} as does the Bohm diffusion coefficient, which is commonly associated with low collisionality and two-dimensional transport. This family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  7. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in magnetized liner inertial fusion-like plasma

    NASA Astrophysics Data System (ADS)

    Velikovich, A. L.; Giuliani, J. L.; Zalesak, S. T.

    2015-04-01

    The magnetized liner inertial fusion (MagLIF) approach to inertial confinement fusion [Slutz et al., Phys. Plasmas 17, 056303 (2010); Cuneo et al., IEEE Trans. Plasma Sci. 40, 3222 (2012)] involves subsonic/isobaric compression and heating of a deuterium-tritium plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion, and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot compressed magnetized plasma to the cold liner is dominated by transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter ( ωeτe≫1 ), the effective diffusion coefficients determining the losses of heat and magnetic flux to the liner wall are both shown to decrease with ωeτe as does the Bohm diffusion coefficient c T /(16 e B ) , which is commonly associated with low collisionality and two-dimensional transport. We demonstrate how this family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  8. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in MagLIF-like plasma

    NASA Astrophysics Data System (ADS)

    Velikovich, A. L.; Giuliani, J. L.; Zalesak, S. T.

    2014-12-01

    The MagLIF approach to inertial confinement fusion involves subsonic/isobaric compression and heating of a DT plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot plasma to the cold liner is dominated by the transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter ωeτe effective diffusion coefficients determining the losses of heat and magnetic flux are both shown to decrease with ωeτe as does the Bohm diffusion coefficient, which is commonly associated with low collisionality and two-dimensional transport. This family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  9. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in magnetized liner inertial fusion-like plasma

    SciTech Connect

    Velikovich, A. L.; Giuliani, J. L.; Zalesak, S. T.

    2015-04-15

    The magnetized liner inertial fusion (MagLIF) approach to inertial confinement fusion [Slutz et al., Phys. Plasmas 17, 056303 (2010); Cuneo et al., IEEE Trans. Plasma Sci. 40, 3222 (2012)] involves subsonic/isobaric compression and heating of a deuterium-tritium plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion, and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot compressed magnetized plasma to the cold liner is dominated by transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter (ω{sub e}τ{sub e}≫1), the effective diffusion coefficients determining the losses of heat and magnetic flux to the liner wall are both shown to decrease with ω{sub e}τ{sub e} as does the Bohm diffusion coefficient cT/(16eB), which is commonly associated with low collisionality and two-dimensional transport. We demonstrate how this family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  10. A two-dimensional, finite-element, flux-corrected transport algorithm for the solution of gas discharge problems

    NASA Astrophysics Data System (ADS)

    Georghiou, G. E.; Morrow, R.; Metaxas, A. C.

    2000-10-01

    An improved finite-element flux-corrected transport (FE-FCT) scheme, which was demonstrated in one dimension by the authors, is now extended to two dimensions and applied to gas discharge problems. The low-order positive ripple-free scheme, required to produce a FCT algorithm, is obtained by introducing diffusion to the high-order scheme (two-step Taylor-Galerkin). A self-adjusting variable diffusion coefficient is introduced, which reduces the high-order scheme to the equivalent of the upwind difference scheme, but without the complexities of an upwind scheme in a finite-element setting. Results are presented which show that the high-order scheme reduces to the equivalent of upwinding when the new diffusion coefficient is used. The proposed FCT scheme is shown to give similar results in comparison to a finite-difference time-split FCT code developed by Boris and Book. Finally, the new method is applied for the first time to a streamer propagation problem in its two-dimensional form.

  11. Vectorization of a 2D-1D Iterative Algorithm for the 3D Neutron Transport Problem in Prismatic Geometries

    NASA Astrophysics Data System (ADS)

    Moustafa, Salli; Févotte, François; Lathuilière, Bruno; Plagne, Laurent

    2014-06-01

    The past few years have been marked by a noticeable increase in the interest in 3D whole-core heterogeneous deterministic neutron transport solvers for reference calculations. Due to the extremely large problem sizes tackled by such solvers, they need to use adapted numerical methods and need to be efficiently implemented to take advantage of the full computing power of modern systems. As for numerical methods, one possible approach consists in iterating over resolutions of 2D and 1D MOC problems by taking advantage of prismatic geometries. The MICADO solver, developed at EDF R&D, is a parallel implementation of such a method in distributed and shared memory systems. However it is currently unable to use SIMD vectorization to leverage the full computing power of modern CPUs. In this paper, we describe our first effort to support vectorization in MICADO, typically targeting Intel© SSE CPUs. Both the 2D and 1D algorithms are vectorized, allowing for high expected speedups for the whole spatial solver. We present benchmark computations, which show nearly optimal speedups for our vectorized implementation on the TAKEDA case.

  12. Solution of the advection-dispersion equation: Continuous load of finite duration

    USGS Publications Warehouse

    Runkel, R.L.

    1996-01-01

    Field studies of solute fate and transport in streams and rivers often involve an. experimental release of solutes at an upstream boundary for a finite period of time. A review of several standard references on surface-water-quality modeling indicates that the analytical solution to the constant-parameter advection-dispersion equation for this type of boundary condition has been generally overlooked. Here an exact analytical solution that considers a continuous load of unite duration is compared to an approximate analytical solution presented elsewhere. Results indicate that the exact analytical solution should be used for verification of numerical solutions and other solute-transport problems wherein a high level of accuracy is required. ?? ASCE.

  13. Aerosol particles and the formation of advection fog

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Liaw, G. S.; Vaughan, O. H., Jr.

    1979-01-01

    A study of numerical simulation of the effects of concentration, particle size, mass of nuclei, and chemical composition on the dynamics of warm fog formation, particularly the formation of advection fog, is presented. This formation is associated with the aerosol particle characteristics, and both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content, and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution. It is shown that the aerosol particles with the higher number density, larger size nuclei, the heavier nuclei mass, and the higher ratio of the Van't Hoff factor to the molecular weight favor the formation of the lower visibility advection fogs with stronger vertical energy transfer during the nucleation and condensation time period.

  14. Spiral defect chaos in an advection-reaction-diffusion system

    NASA Astrophysics Data System (ADS)

    Affan, H.; Friedrich, R.

    2014-06-01

    This paper comprises numerical and theoretical studies of spatiotemporal patterns in advection-reaction-diffusion systems in which the chemical species interact with the hydrodynamic fluid. Due to the interplay between the two, we obtained the spiral defect chaos in the activator-inhibitor-type model. We formulated the generalized Swift-Hohenberg-type model for this system. Then the evolution of fractal boundaries due to the effect of the strong nonlinearity at the interface of the two chemical species is studied numerically. The purpose of the present paper is to point out that spiral defect chaos, observed in model equations of the extended Swift-Hohenberg equation for low Prandtl number convection, may actually be obtained also in certain advection-reaction-diffusion systems.

  15. Phase Segregation of Passive Advective Particles in an Active Medium.

    PubMed

    Das, Amit; Polley, Anirban; Rao, Madan

    2016-02-12

    Localized contractile configurations or asters spontaneously appear and disappear as emergent structures in the collective stochastic dynamics of active polar actomyosin filaments. Passive particles which (un)bind to the active filaments get advected into the asters, forming transient clusters. We study the phase segregation of such passive advective scalars in a medium of dynamic asters, as a function of the aster density and the ratio of the rates of aster remodeling to particle diffusion. The dynamics of coarsening shows a violation of Porod behavior; the growing domains have diffuse interfaces and low interfacial tension. The phase-segregated steady state shows strong macroscopic fluctuations characterized by multiscaling and intermittency, signifying rapid reorganization of macroscopic structures. We expect these unique nonequilibrium features to manifest in the actin-dependent molecular clustering at the cell surface. PMID:26919022

  16. Phase Segregation of Passive Advective Particles in an Active Medium

    NASA Astrophysics Data System (ADS)

    Das, Amit; Polley, Anirban; Rao, Madan

    2016-02-01

    Localized contractile configurations or asters spontaneously appear and disappear as emergent structures in the collective stochastic dynamics of active polar actomyosin filaments. Passive particles which (un)bind to the active filaments get advected into the asters, forming transient clusters. We study the phase segregation of such passive advective scalars in a medium of dynamic asters, as a function of the aster density and the ratio of the rates of aster remodeling to particle diffusion. The dynamics of coarsening shows a violation of Porod behavior; the growing domains have diffuse interfaces and low interfacial tension. The phase-segregated steady state shows strong macroscopic fluctuations characterized by multiscaling and intermittency, signifying rapid reorganization of macroscopic structures. We expect these unique nonequilibrium features to manifest in the actin-dependent molecular clustering at the cell surface.

  17. Cellwise conservative unsplit advection for the volume of fluid method

    NASA Astrophysics Data System (ADS)

    Comminal, Raphaël; Spangenberg, Jon; Hattel, Jesper Henri

    2015-02-01

    We present a cellwise conservative unsplit (CCU) advection scheme for the volume of fluid method (VOF) in 2D. Contrary to other schemes based on explicit calculations of the flux balances, the CCU advection adopts a cellwise approach where the pre-images of the control volumes are traced backwards through the flow map. The donating regions of the fluxes are calculated via the streaklines of the grid intersections, represented as polygonal chains whose vertices are determined by backward tracing of particles injected in the flow at different times. High order accuracy is obtained from the fourth-order Runge-Kutta method, where intermediate velocities along pathlines are determined with quadratic temporal and bicubic spatial interpolations. The volumes of the donating regions are corrected in order to fulfill the discrete continuity of incompressible flows. Consequently, the calculation produces non-overlapping donating regions and pre-images with conforming edges to their neighbors, resulting in the conservativeness and the boundedness (liquid volume fraction inside the interval [ 0 , 1 ]) of the CCU advection scheme. Finally, the update of the liquid volume fractions is computed from the intersections of the pre-image polygons with the reconstructed interfaces. The CCU scheme is tested on several benchmark tests for the VOF advection, together with the standard piecewise linear interface calculation (PLIC). The geometrical errors of the CCU compare favorably with other unsplit VOF-PLIC schemes. Finally, potential improvements of the VOF method with the use of more precise interface representation techniques and the future extension of the CCU scheme to 3D are discussed.

  18. Modeling solute advection coupled with sorption kinetics in heterogeneous formations

    NASA Astrophysics Data System (ADS)

    Selroos, Jan-Olof; Cvetkovic, Vladimir

    1992-05-01

    A method for coupling sorption kinetics and solute advection in particle-tracking models is proposed; this method is efficient for the case where sorption rate coefficients can be assumed constant field scale parameters. A simulation example of reactive solute advection in two-dimensional heterogeneous porous media is presented. The effect of sorption kinetics on solute advection is investigated. Nonequilibrium effects are exhibited as enhanced tailing in the solute breakthrough. Because high variability in the hydraulic conductivity also yields enhanced tailing, the nonequilibrium effect is more pronounced for the case of low variability. Moreover, it may be difficult to distinguish cases of low variability with nonequilibrium sorption from cases of high variability with equilibrium sorption. A comparison of Monte Carlo ensemble results is made with an analytical model for the mass arrival of kinetically sorbing solute in heterogeneous porous media obtained using first-order perturbation. The comparison indicates that the analytical model provides reasonable approximations of the expected solute breakthrough if the variance of the natural logarithm of the hydraulic conductivity is smaller than 1.

  19. Vertical Structure of Advection-dominated Accretion Flows

    NASA Astrophysics Data System (ADS)

    Zahra Zeraatgari, Fateme; Abbassi, Shahram

    2015-08-01

    We solve the set of hydrodynamic equations for optically thin advection-dominated accretion flows by assuming a radially self-similar spherical coordinate system (r,θ ,φ ). The disk is considered to be in steady state and axisymmetric. We define the boundary conditions at the pole and the equator of the disk and, to avoid singularity at the rotation axis, the disk is taken to be symmetric with respect to this axis. Moreover, only the {τ }rφ component of the viscous stress tensor is assumed, and we have set {v}θ =0. The main purpose of this study is to investigate the variation of dynamical quantities of the flow in the vertical direction by finding an analytical solution. As a consequence, we found that the advection parameter, {f}{adv}, varies along the θ direction and reaches its maximum near the rotation axis. Our results also show that, in terms of the no-outflow solution, thermal equilibrium still exists and consequently advection cooling can balance viscous heating.

  20. Diffusion algorithms and data reduction routine for onsite real-time launch predictions for the transport of Delta-Thor exhaust effluents

    NASA Technical Reports Server (NTRS)

    Stephens, J. B.

    1976-01-01

    The National Aeronautics and Space Administration/Marshall Space Flight Center multilayer diffusion algorithms have been specialized for the prediction of the surface impact for the dispersive transport of the exhaust effluents from the launch of a Delta-Thor vehicle. This specialization permits these transport predictions to be made at the launch range in real time so that the effluent monitoring teams can optimize their monitoring grids. Basically, the data reduction routine requires only the meteorology profiles for the thermodynamics and kinematics of the atmosphere as an input. These profiles are graphed along with the resulting exhaust cloud rise history, the centerline concentrations and dosages, and the hydrogen chloride isopleths.

  1. Enhancement of microbial motility due to advection-dependent nutrient absorption

    NASA Astrophysics Data System (ADS)

    Condat, Carlos A.; di Salvo, Mario E.

    2014-03-01

    In their classical work, Berg and Purcell [Biophys. J. 20, 193 (1977)] concluded that the motion of a small microorganism would not significantly increase its nutrient uptake rate, if the nutrient consisted of high diffusivity particles. As a result, it has been generally assumed that nutrient transport to small microorganisms such as bacteria is dominated by molecular diffusion and that swimming and feeding currents play a negligible role. On the other hand, recent studies have found that flagellar motion may increase advection-mediated uptake. We formulate a model to investigate the hypothesis that fast-moving microbes may enhance their swimming speed by taking advantage of advection to increase nutrient absorption. Surprisingly, using realistic parameter values for bacteria and algae, we find that even modest increases in nutrient absorption may lead to a significant increase of the microbial speed. We also show that, optimally, the rate of effective energy transfer to the microbial propulsion system should be proportional to the speed for slow motion, while it should be proportional to a power of the speed close to two for fast motion. We are grateful to SECyT-UNC and CONICET, Argentina, for financial support.

  2. An improved second moment method for solution of pure advection problems

    NASA Astrophysics Data System (ADS)

    Ghods, Abdolreza; Sobouti, Farhad; Arkani-Hamed, Jafar

    2000-04-01

    The second moment numerical method (SMM) of Egan and Mahoney [Numerical modeling of advection and diffusion of urban area source pollutant. Journal of Applied Meteorology 1972; 11: 312-322] is adapted to solve for the pure advection transport equation in a variety of flow fields. SMM eliminates numerical diffusion by employing a procedure that takes into account the first and second moments of mass distribution in each grid element. For pure translational flow fields, the method is conservative, positive definite and shape-preserving. In rotational and/or shear flows, the accuracy of SMM is significantly reduced. Two improvements are presented to make the SMM applicable to a wider range of flow problems. It is shown that the improved SMM (ISMM) is less diffusive and more shape-preserving than the SMM in rotational and/or deformational flows. The ISMM can also be used to solve for a color function in compressible flow fields. The computational efficiency of this method is compared with that of other methods and, for a given accuracy, it is shown that ISMM is a cost-effective, non-diffusive and shape-preserving method. Copyright

  3. Advective and Conductive Heat Flow Budget Across the Wagner Basin, Northern Gulf of California

    NASA Astrophysics Data System (ADS)

    Neumann, F.; Negrete-Aranda, R.; Contreras, J.; Müller, C.; Hutnak, M.; Gonzalez-Fernandez, A.; Harris, R. N.; Sclater, J. G.

    2015-12-01

    In May 2015, we conducted a cruise across the northern Gulf of California, an area of continental rift basin formation and rapid deposition of sediments. The cruise was undertaken aboard the R/V Alpha Helix; our goal was to study variation in superficial conductive heat flow, lateral changes in the shallow thermal conductivity structure, and advective transport of heat across the Wagner basin. We used a Fielax heat flow probe with 22 thermistors that can penetrate up to 6 m into the sediment cover. The resulting data set includes 53 new heat flow measurements collected along three profiles. The longest profile (42 km) contains 30 measurements spaced 1-2 km apart. The western part of the Wagner basin (hanging wall block) exhibit low to normal conductive heat flow whereas the eastern part of the basin (foot wall block) heat flow is high to very high (up to 2500 mWm-2). Two other short profiles (12 km long each) focused on resolving an extremely high heat flow anomaly up to 15 Wm-2 located near the intersection between the Wagner bounding fault system and the Cerro Prieto fault. We hypothesize that the contrasting heat flow values observed across the Wagner basin are due to horizontal water circulation through sand layers and fault pathways of high permeability. Circulation appears to be from west (recharge zone) to east (discharge zone). Additionally, our results reveal strong vertical advection of heat due to dehydration reactions and compaction of fine grained sediments.

  4. Probabilistic exposure risk assessment with advective-dispersive well vulnerability criteria

    NASA Astrophysics Data System (ADS)

    Enzenhoefer, Rainer; Nowak, Wolfgang; Helmig, Rainer

    2012-02-01

    Time-related advection-based well-head protection zones are commonly used to manage the contamination risk of drinking water wells. According to current water safety plans advanced risk management schemes are needed to better control and monitor all possible hazards within catchments. The goal of this work is to cast the four advective-dispersive intrinsic well vulnerability criteria by Frind et al. [1] into a framework of probabilistic risk assessment framework. These criteria are: (i) arrival time, (ii) level of peak concentration, (iii) time until first arrival of critical concentrations and (iv) exposure time. Our probabilistic framework yields catchment-wide maps of probabilities to not comply with these criteria. This provides indispensable information for catchment managers to perform probabilistic exposure risk assessment and thus improves the basis for risk-informed well-head management. We resolve heterogeneity with high-resolution Monte Carlo simulations and use a new reverse formulation of temporal moment transport equations to keep computational costs low. Our method is independent of dimensionality and boundary conditions, and can account for arbitrary sources of uncertainty. It can be coupled with any method for conditioning on available data. For simplicity, we demonstrate the concept on a 2D example that includes conditioning on synthetic data.

  5. Numerical Modeling of Deep Mantle Convection: Advection and Diffusion Schemes for Marker Methods

    NASA Astrophysics Data System (ADS)

    Mulyukova, Elvira; Dabrowski, Marcin; Steinberger, Bernhard

    2013-04-01

    Thermal and chemical evolution of Earth's deep mantle can be studied by modeling vigorous convection in a chemically heterogeneous fluid. Numerical modeling of such a system poses several computational challenges. Dominance of heat advection over the diffusive heat transport, and a negligible amount of chemical diffusion results in sharp gradients of thermal and chemical fields. The exponential dependence of the viscosity of mantle materials on temperature also leads to high gradients of the velocity field. The accuracy of many numerical advection schemes degrades quickly with increasing gradient of the solution, while the computational effort, in terms of the scheme complexity and required resolution, grows. Additional numerical challenges arise due to a large range of length-scales characteristic of a thermochemical convection system with highly variable viscosity. To examplify, the thickness of the stem of a rising thermal plume may be a few percent of the mantle thickness. An even thinner filament of an anomalous material that is entrained by that plume may consitute less than a tenth of a percent of the mantle thickness. We have developed a two-dimensional FEM code to model thermochemical convection in a hollow cylinder domain, with a depth- and temperature-dependent viscosity representative of the mantle (Steinberger and Calderwood, 2006). We use marker-in-cell method for advection of chemical and thermal fields. The main advantage of perfoming advection using markers is absence of numerical diffusion during the advection step, as opposed to the more diffusive field-methods. However, in the common implementation of the marker-methods, the solution of the momentum and energy equations takes place on a computational grid, and nodes do not generally coincide with the positions of the markers. Transferring velocity-, temperature-, and chemistry- information between nodes and markers introduces errors inherent to inter- and extrapolation. In the numerical scheme

  6. Application of a Particle Method to the Advection-Diffusion-Reaction Equation

    NASA Astrophysics Data System (ADS)

    Paster, A.; Bolster, D.; Benson, D. A.

    2012-12-01

    A reaction between two chemical species can only happen if molecules collide and react. Thus, the mixing of a system can become a limiting factor in the onset of reaction. Solving for reaction rate in a well-mixed system is typically a straightforward task. However, when incomplete mixing kicks in, obtaining a solution becomes more challenging. Since reaction can only happen in regions where both reactants co-exist, the incomplete mixing may slow down the reaction rate, when compared to a well-mixed system. The effect of incomplete mixing upon reaction is a highly important aspect of various processes in natural and engineered systems, ranging from mineral precipitation in geological formations to groundwater remediation in aquifers. We study a relatively simple system with a bi-molecular irreversible kinetic reaction A+B → Ø where the underlying transport of reactants is governed by an advection-diffusion equation, and the initial concentrations are given in terms of an average and a perturbation. Such a system does not have an analytical solution to date, even for the zero advection case. We model the system by a Monte Carlo particle tracking method, where particles represent some reactant mass. In this method, diffusion is modeled by a random walk of the particles, and reaction is modeled by annihilation of particles. The probability of the annihilation is proportional to the reaction rate constant and the probability density associated with particle co-location. We study the numerical method in depth, characterizing typical numerical errors and time step restrictions. In particular, we show that the numerical method converges to the advection-diffusion-reaction equation at the limit Δt →0. We also rigorously derive the relationship between the initial number of particles in the system and the initial concentrations perturbations represented by that number. We then use the particle simulations of zero-advection system to demonstrate the well

  7. Experimental tsunami deposits: Linking hydrodynamics to sediment entrainment, advection lengths and downstream fining

    NASA Astrophysics Data System (ADS)

    Johnson, Joel P. L.; Delbecq, Katie; Kim, Wonsuck; Mohrig, David

    2016-01-01

    A goal of paleotsunami research is to quantitatively reconstruct wave hydraulics from sediment deposits in order to better understand coastal hazards. Simple models have been proposed to predict wave heights and velocities, based largely on deposit grain size distributions (GSDs). Although seemingly consistent with some recent tsunamis, little independent data exist to test these equations. We conducted laboratory experiments to evaluate inversion assumptions and uncertainties. A computer-controlled lift gate instantaneously released ~ 6.5 m3 of water into a 32 m flume with shallow ponded water, creating a hydraulic bore that transported sand from an upstream source dune. Differences in initial GSDs and ponded water depths influenced entrainment, transport, and deposition. While the source dune sand was fully suspendable based on size alone, experimental tsunamis produced deposits dominated by bed load sand transport in the upstream ~ 1/3 of the flume and suspension-dominated transport downstream. The suspension deposits exhibited downstream fining and thinning. At 95% confidence, a published advection-settling model predicts time-averaged flow depths to approximately a factor of two, and time-averaged downstream flow velocities to within a factor of 1.5. Finally, reasonable scaling is found between flume and field cases by comparing flow depths, inundation distances, Froude numbers, Rouse numbers and grain size trends in suspension-dominated tsunami deposits, justifying laboratory study of sediment transport and deposition by tsunamis.

  8. New source and process apportionment method using a three-dimensional chemical transport model: Process, Age, and Source region Chasing ALgorithm (PASCAL)

    NASA Astrophysics Data System (ADS)

    Matsui, H.; Koike, M.

    2012-08-01

    We have developed a new source and process apportionment method, the Process, Age, and Source region Chasing ALgorithm (PASCAL), and implemented it in a three-dimensional chemical transport model, the Community Multiscale Air Quality (CMAQ) model. By adding new variables (tagged species), PASCAL traces 1) the source region of emissions (source apportionment), 2) the age of individual species (elapsed time from emissions), 3) net and gross production and loss amounts from individual physical and chemical processes during transport (Lagrangian way), and 4) local production and loss rates at individual grid cells (Eulerian way) for primary and secondary aerosols and their precursor gases. The main advantage of PASCAL is the third one, which can trace accumulated production and loss amounts of individual processes during transport from source regions to each grid cell (Lagrangian type of integration) for both gross (production and loss) and net (gross production - loss) concentrations. Currently the method is applied for mixing ratios of CO and SO2 and mass concentrations of black carbon and sulfate aerosols. This algorithm is not impacted by the non-linearity of chemical reactions and is computationally efficient. CMAQ/PASCAL model calculations were conducted over the East Asian region to test its performance. The overall validity of PASCAL calculations is confirmed for all species, periods, altitudes, and regions. This algorithm will be a useful tool in evaluating source regions as well as formation and loss processes of aerosols in the atmosphere in order to make effective strategies for emissions reduction.

  9. A HIGHWAY MODEL FOR THE ADVECTION, DIFFUSION AND CHEMICAL REACTION OF POLLUTANTS RELEASED BY AUTOMOBILES: PART I. ADVECTION AND DIFFUSION OF SF6 TRACER GAS

    EPA Science Inventory

    A two-dimensional, finite-difference model simulating a highway has been developed which is able to handle linear and nonlinear chemical reactions. Transport of the pollutants is accomplished by use of an upstream-flux-corrected algorithm developed at the Naval Research Laborator...

  10. Sensitivity of Age-of-Air Calculations to the Choice of Advection Scheme

    NASA Technical Reports Server (NTRS)

    Eluszkiewicz, Janusz; Hemler, Richard S.; Mahlman, Jerry D.; Bruhwiler, Lori; Takacs, Lawrence L.

    2000-01-01

    The age of air has recently emerged as a diagnostic of atmospheric transport unaffected by chemical parameterizations, and the features in the age distributions computed in models have been interpreted in terms of the models' large-scale circulation field. This study shows, however, that in addition to the simulated large-scale circulation, three-dimensional age calculations can also be affected by the choice of advection scheme employed in solving the tracer continuity equation, Specifically, using the 3.0deg latitude X 3.6deg longitude and 40 vertical level version of the Geophysical Fluid Dynamics Laboratory SKYHI GCM and six online transport schemes ranging from Eulerian through semi-Lagrangian to fully Lagrangian, it will be demonstrated that the oldest ages are obtained using the nondiffusive centered-difference schemes while the youngest ages are computed with a semi-Lagrangian transport (SLT) scheme. The centered- difference schemes are capable of producing ages older than 10 years in the mesosphere, thus eliminating the "young bias" found in previous age-of-air calculations. At this stage, only limited intuitive explanations can be advanced for this sensitivity of age-of-air calculations to the choice of advection scheme, In particular, age distributions computed online with the National Center for Atmospheric Research Community Climate Model (MACCM3) using different varieties of the SLT scheme are substantially older than the SKYHI SLT distribution. The different varieties, including a noninterpolating-in-the-vertical version (which is essentially centered-difference in the vertical), also produce a narrower range of age distributions than the suite of advection schemes employed in the SKYHI model. While additional MACCM3 experiments with a wider range of schemes would be necessary to provide more definitive insights, the older and less variable MACCM3 age distributions can plausibly be interpreted as being due to the semi-implicit semi

  11. Differential patterns of divergence in ocean drifters: Implications for larval flatfish advection and recruitment

    NASA Astrophysics Data System (ADS)

    Wilderbuer, Thomas; Duffy-Anderson, Janet T.; Stabeno, Phyllis; Hermann, Albert

    2016-05-01

    effect on horizontal eddy diffusion, increasing its value by a factor of five in the case of fixed-depth floats, as compared with a factor of two in the case of neutrally buoyant floats. Further, the incorporation of diurnal vertical behavior in phase with favorable (on shelf) tides transported the "larvae" ~ 400 km within 40 days of their release date. Empirical drifter data coupled with model evidence suggest that semi-diurnal tidal forcing is the primary mechanism of eastward advection over the Bering Sea shelf, and larval observational data suggest that northern rock sole larvae can maximize their eastward transport to nursery grounds by synchronizing their vertical movements to tidal periodicity during the postflexion stage.

  12. Advection of surface-derived organic carbon fuels microbial reduction in Bangladesh groundwater

    PubMed Central

    Mailloux, Brian J.; Trembath-Reichert, Elizabeth; Cheung, Jennifer; Watson, Marlena; Stute, Martin; Freyer, Greg A.; Ferguson, Andrew S.; Ahmed, Kazi Matin; Alam, Md. Jahangir; Buchholz, Bruce A.; Thomas, James; Layton, Alice C.; Zheng, Yan; Bostick, Benjamin C.; van Geen, Alexander

    2013-01-01

    Chronic exposure to arsenic (As) by drinking shallow groundwater causes widespread disease in Bangladesh and neighboring countries. The release of As naturally present in sediment to groundwater has been linked to the reductive dissolution of iron oxides coupled to the microbial respiration of organic carbon (OC). The source of OC driving this microbial reduction—carbon deposited with the sediments or exogenous carbon transported by groundwater—is still debated despite its importance in regulating aquifer redox status and groundwater As levels. Here, we used the radiocarbon (14C) signature of microbial DNA isolated from groundwater samples to determine the relative importance of surface and sediment-derived OC. Three DNA samples collected from the shallow, high-As aquifer and one sample from the underlying, low-As aquifer were consistently younger than the total sediment carbon, by as much as several thousand years. This difference and the dominance of heterotrophic microorganisms implies that younger, surface-derived OC is advected within the aquifer, albeit more slowly than groundwater, and represents a critical pool of OC for aquifer microbial communities. The vertical profile shows that downward transport of dissolved OC is occurring on anthropogenic timescales, but bomb 14C-labeled dissolved OC has not yet accumulated in DNA and is not fueling reduction. These results indicate that advected OC controls aquifer redox status and confirm that As release is a natural process that predates human perturbations to groundwater flow. Anthropogenic perturbations, however, could affect groundwater redox conditions and As levels in the future. PMID:23487743

  13. Numerical simulation of life cycles of advection warm fog

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Vaughan, O. H.

    1977-01-01

    The formation, development and dissipation of advection warm fog is investigated. The equations employed in the model include the equation of continuity, momentum and energy for the descriptions of density, wind component and potential temperature, respectively, together with two diffusion equations for the modification of water-vapor mixing ratio and liquid-water mixing ratios. A description of the vertical turbulent transfer of heat, moisture and momentum has been taken into consideration. The turbulent exchange coefficients adopted in the model are based on empirical flux-gradient relations.

  14. Transportation.

    ERIC Educational Resources Information Center

    Crank, Ron

    This instructional unit is one of 10 developed by students on various energy-related areas that deals specifically with transportation and energy use. Its objective is for the student to be able to discuss the implication of energy usage as it applies to the area of transportation. Some topics covered are efficiencies of various transportation…

  15. Analytical solutions to the fractional advection-diffusion equation with time-dependent pulses on the boundary

    NASA Astrophysics Data System (ADS)

    Rubbab, Qammar; Mirza, Itrat Abbas; Qureshi, M. Zubair Akbar

    2016-07-01

    The time-fractional advection-diffusion equation with Caputo-Fabrizio fractional derivatives (fractional derivatives without singular kernel) is considered under the time-dependent emissions on the boundary and the first order chemical reaction. The non-dimensional problem is formulated by using suitable dimensionless variables and the fundamental solutions to the Dirichlet problem for the fractional advection-diffusion equation are determined using the integral transforms technique. The fundamental solutions for the ordinary advection-diffusion equation, fractional and ordinary diffusion equation are obtained as limiting cases of the previous model. Using Duhamel's principle, the analytical solutions to the Dirichlet problem with time-dependent boundary pulses have been obtained. The influence of the fractional parameter and of the drift parameter on the solute concentration in various spatial positions was analyzed by numerical calculations. It is found that the variation of the fractional parameter has a significant effect on the solute concentration, namely, the memory effects lead to the retardation of the mass transport.

  16. On achieving element-wise species balance and enforcing non-negative constraint for advection-diffusion-reaction equations

    NASA Astrophysics Data System (ADS)

    Mudunuru, M. K.; Nakshatrala, K.

    2012-12-01

    Advection-Diffusion-Reaction (ADR) equations naturally arises in many physical phenomena, which include seepage of contaminants in heterogeneous porous media, transport of injected tracers due to the flow of oil in a petroleum reservoir, and degradation of a deformable solid due to diffusing chemical species. Vast literature exists on how to solve this equation in the cases when the medium is isotropic, velocity field being divergence free, and for advection-dominated problems. However, it is well know that many popular finite element formulations (e.g., the standard Galerkin formulation, stabilized methods, variational multi-scale methods, subgrid-scale methods, and primitive least-squares formulations) do not satisfy element-by-element mass/species balance and do not produce non-negative solutions on general computational grids. Various post-processing based methods were developed in order to recover some properties of computed numerical solutions. Most of these post-processing techniques are ad hoc, and are not variationally consistent. In this poster, we shall present a novel numerical methodology for ADR equations that satisfy discrete maximum principles, the non-negative constraint, and element-by-element mass/species balance. The methodology can handle general computational grids, no additional restrictions on time-step, and for heterogeneous anisotropic media. Several numerical results pertinent to advection-dominated ADR problems will be presented to illustrate the performance of the proposed numerical formulation.

  17. Advection and starvation cause krill (Euphausia pacifica) decreases in 2005 Northern California coastal populations: Implications from a model study

    NASA Astrophysics Data System (ADS)

    Dorman, Jeffrey G.; Powell, Thomas M.; Sydeman, William J.; Bograd, Steven J.

    2011-02-01

    A decrease in krill abundance during 2005 in regions of the California Current has been hypothesized to have had immediate (seabird) and long-term (salmon) negative impacts on upper trophic level predators. We use a suite of coupled models to examine the population biology and spatial and temporal distribution of the krill species Euphausia pacifica during the winter/spring of 2001, a “normal” year, and 2005, an “anomalous” year, to determine if this hypothesis is supported mechanistically. Ocean conditions were simulated using the Regional Ocean Modeling System (ROMS), which forced an individual-based model parameterized to simulate the population biology of E. pacifica. Poleward transport during winter 2005 advected particles north of Cape Mendocino, away from seabirds and salmon feeding in the Gulf of the Farallons region. Few of the particles that were advected north in 2005 returned to their region of release throughout the model run time (200 days). Moreover, the “condition” of those particles remaining within the domain was poor in 2005, with greater mortality from starvation and a decreased mean particle weight. Our results indicate that both physical processes (anomalous northern advection) and biological processes (greater starvation and less weight per individual) contributed to reduced krill availability to predators in the northern California region during 2005, and that the productivity and survival of seabirds and salmonids is dependent on krill during critical life history stages.

  18. A cryogenic circulating advective multi-pass absorption cell

    NASA Astrophysics Data System (ADS)

    Stockett, M. H.; Lawler, J. E.

    2012-03-01

    A novel absorption cell has been developed to enable a spectroscopic survey of a broad range of polycyclic aromatic hydrocarbons (PAH) under astrophysically relevant conditions and utilizing a synchrotron radiation continuum to test the still controversial hypothesis that these molecules or their ions could be carriers of the diffuse interstellar bands. The cryogenic circulating advective multi-pass absorption cell resembles a wind tunnel; molecules evaporated from a crucible or injected using a custom gas feedthrough are entrained in a laminar flow of cryogenically cooled buffer gas and advected into the path of the synchrotron beam. This system includes a multi-pass optical White cell enabling absorption path lengths of hundreds of meters and a detection sensitivity to molecular densities on the order of 107 cm-3. A capacitively coupled radio frequency dielectric barrier discharge provides ionized and metastable buffer gas atoms for ionizing the candidate molecules via charge exchange and the Penning effect. Stronger than expected clustering of PAH molecules has slowed efforts to record gas phase PAH spectra at cryogenic temperatures, though such clusters may play a role in other interstellar phenomena.

  19. Advection-Based Sparse Data Management for Visualizing Unsteady Flow.

    PubMed

    Guo, Hanqi; Zhang, Jiang; Liu, Richen; Liu, Lu; Yuan, Xiaoru; Huang, Jian; Meng, Xiangfei; Pan, Jingshan

    2014-12-01

    When computing integral curves and integral surfaces for large-scale unsteady flow fields, a major bottleneck is the widening gap between data access demands and the available bandwidth (both I/O and in-memory). In this work, we explore a novel advection-based scheme to manage flow field data for both efficiency and scalability. The key is to first partition flow field into blocklets (e.g. cells or very fine-grained blocks of cells), and then (pre)fetch and manage blocklets on-demand using a parallel key-value store. The benefits are (1) greatly increasing the scale of local-range analysis (e.g. source-destination queries, streak surface generation) that can fit within any given limit of hardware resources; (2) improving memory and I/O bandwidth-efficiencies as well as the scalability of naive task-parallel particle advection. We demonstrate our method using a prototype system that works on workstation and also in supercomputing environments. Results show significantly reduced I/O overhead compared to accessing raw flow data, and also high scalability on a supercomputer for a variety of applications. PMID:26356969

  20. THE ADVECTION OF SUPERGRANULES BY THE SUN'S AXISYMMETRIC FLOWS

    SciTech Connect

    Hathaway, David H.; Williams, Peter E.; Rosa, Kevin Dela; Cuntz, Manfred E-mail: peter.williams@nasa.go

    2010-12-10

    We show that the motions of supergranules are consistent with a model in which they are simply advected by the axisymmetric flows in the Sun's surface shear layer. We produce a 10 day series of simulated Doppler images at a 15 minute cadence that reproduces most spatial and temporal characteristics seen in the SOHO/MDI Doppler data. Our simulated data have a spectrum of cellular flows with just two components-a granule component that peaks at spherical wavenumbers of about 4000 and a supergranule component that peaks at wavenumbers of about 110. We include the advection of these cellular components by the axisymmetric flows-differential rotation and meridional flow-whose variations with latitude and depth (wavenumber) are consistent with observations. We mimic the evolution of the cellular pattern by introducing random variations to the phases of the spectral components at rates that reproduce the levels of cross-correlation as functions of time and latitude. Our simulated data do not include any wave-like characteristics for the supergranules yet can reproduce the rotation characteristics previously attributed to wave-like behavior. We find rotation rates which appear faster than the actual rotation rates and attribute this to projection effects. We find that the measured meridional flow does accurately represent the actual flow and that the observations indicate poleward flow to 65{sup 0}-70{sup 0} latitude with equatorward countercells in the polar regions.

  1. Moisture advection to the Arctic : forecasted, analysed and observed

    NASA Astrophysics Data System (ADS)

    Dufour, Ambroise; Zolina, Olga

    2015-04-01

    Besides its contribution to the Arctic hydrological budget, moisture imports from mid-latitudes are also influential on shorter time scales since water vapour advection tends to occur together with extratropical cyclones. Influx of moisture to the Arctic cause the formation of clouds that have an immediate impact on the surface energy budget especially in winter. In the long run, inaccuracies in the description of cloud cover and phase lead to temperature biases in CMIP5 models. The ECMWF workshop on polar prediction has highlighted moisture advection as one of the problematic physical processes limiting the quality of forecasts. Verifying the accuracy of medium-term forecasts is of interest beyond weather prediction : it points to the ability of models to bring adequate quantities of moisture to the Arctic when they are less constrained by observations than in analyses. In this study, we have compared forecasted moisture flux fields with analyses and observations over the period 2000-2010. ECMWF's ERA-Interim provided the forecasts, extending to ten days. For the analyses, in addition to ERA-Interim, we used the Arctic System Reanalysis whose forecast model is optimized for the polar regions and runs at high resolution (30 km). Finally, the Integrated Global Radiosonde Archive data over the Arctic allowed a validation by observations.

  2. Horizontal advection, diffusion and plankton spectra at the sea surface.

    NASA Astrophysics Data System (ADS)

    Bracco, A.; Clayton, S.; Pasquero, C.

    2009-04-01

    Plankton patchiness is ubiquitous in the oceans, and various physical and biological processes have been proposed as its generating mechanisms. However, a coherent statement on the problem is missing, due to both a small number of suitable observations and to an incomplete understanding of the properties of reactive tracers in turbulent media. Abraham (1998) suggested that horizontal advection may be the dominant process behind the observed distributions of phytoplankton and zooplankton, acting to mix tracers with longer reaction times (Rt) down to smaller scales. Conversely, Mahadevan and Campbell (2002) attributed the relative distributions of sea surface temperature and phytoplankton to small scale upwelling, where tracers with longer Rt are able to homogenize more than those with shorter reaction times. Neither of the above mechanisms can explain simultaneously the (relative) spectral slopes of temperature, phytoplankton and zooplankton. Here, with a simple advection model and a large suite of numerical experiments, we concentrate on some of the physical processes influencing the relative distributions of tracers at the ocean surface, and we investigate: 1) the impact of the spatial scale of tracer supply; 2) the role played by coherent eddies on the distribution of tracers with different Rt; 3) the role of diffusion (so far neglected). We show that diffusion determines the distribution of temperature, regardless of the nature of the forcing. We also find that coherent structures together with differential diffusion of tracers with different Rt impact the tracer distributions. This may help in understanding the highly variable nature of observed plankton spectra.

  3. SEPs Dropout Events Associated with Advected Interplanetary Magnetic Structures

    NASA Astrophysics Data System (ADS)

    Bruno, R.; Trenchi, L.; Telloni, D.; D'Amicis, R.; Marcucci, F.; Zurbuchen, T.; Weberg, M. J.

    2013-05-01

    The intensity profile of energetic particles from impulsive solar flares (SEP) often shows abrupt dropouts affecting all energies simultaneously, without time-dispersion. Part of the community thinks that these modulations are directly related to the presence of magnetic structures with a different magnetic topology advected by the wind, a sort of magnetic flux tubes. During the expansion, following the dynamical interaction between plasma regions travelling at different speed, these structures would be partially tangled up in a sort of spaghetti-like bundle. These flux tubes would be alternatively connected or not connected with the flare site and, consequently, they would be filled or devoid of SEPs. When the observer passes through them, he would observe clear particles dropout signatures. We will report about results from a detailed analysis of SEP events which showed several signatures in the local magnetic field and/or plasma parameters associated with SEP modulations. These findings corroborate the idea of a possible link between these particles events observed at the Earth's orbit and magnetic connection or disconnection of the ambient magnetic field with the flare region at the Sun. We will also discuss the advantages represented by future Solar Orbiter in-situ observations. As a matter of fact, Solar Orbiter, from its orbital vantage point during the quasi corotation phase, will be a priviledged observer of this kind of phenomenon since it will observe the advected structure of the solar wind not yet reprocessed by dynamical interaction due to wind expansion.

  4. Toward enhanced subsurface intervention methods using chaotic advection.

    PubMed

    Trefry, Michael G; Lester, Daniel R; Metcalfe, Guy; Ord, Alison; Regenauer-Lieb, Klaus

    2012-01-01

    Many intervention activities in the terrestrial subsurface involve the need to recover/emplace distributions of scalar quantities (e.g. dissolved phase concentrations or heat) from/in volumes of saturated porous media. These scalars can be targeted by pump-and-treat methods or by amendment technologies. Application examples include in-situ leaching for metals, recovery of dissolved contaminant plumes, or utilizing heat energy in geothermal reservoirs. While conventional pumping methods work reasonably well, costs associated with maintaining pumping schedules are high and improvements in efficiency would be welcome. In this paper we discuss how transient switching of the pressure at different wells can intimately control subsurface flow, generating a range of "programmed" flows with various beneficial characteristics. Some programs produce chaotic flows which accelerate mixing, while others create encapsulating flows which can isolate fluid zones for lengthy periods. In a simplified model of an aquifer subject to balanced pumping, chaotic flow topologies have been predicted theoretically and verified experimentally using Hele-Shaw cells. Here, a survey of the key characteristics of chaotic advection is presented. Mathematical methods are used to show how these characteristics may translate into practical situations involving regional flows and heterogeneity. The results are robust to perturbations, and withstand significant aquifer heterogeneity. It is proposed that chaotic advection may form the basis of new efficient technologies for groundwater interventions. PMID:21600670

  5. Multiple anisotropic collisions for advection-diffusion Lattice Boltzmann schemes

    NASA Astrophysics Data System (ADS)

    Ginzburg, Irina

    2013-01-01

    This paper develops a symmetrized framework for the analysis of the anisotropic advection-diffusion Lattice Boltzmann schemes. Two main approaches build the anisotropic diffusion coefficients either from the anisotropic anti-symmetric collision matrix or from the anisotropic symmetric equilibrium distribution. We combine and extend existing approaches for all commonly used velocity sets, prescribe most general equilibrium and build the diffusion and numerical-diffusion forms, then derive and compare solvability conditions, examine available anisotropy and stable velocity magnitudes in the presence of advection. Besides the deterioration of accuracy, the numerical diffusion dictates the stable velocity range. Three techniques are proposed for its elimination: (i) velocity-dependent relaxation entries; (ii) their combination with the coordinate-link equilibrium correction; and (iii) equilibrium correction for all links. Two first techniques are also available for the minimal (coordinate) velocity sets. Even then, the two-relaxation-times model with the isotropic rates often gains in effective stability and accuracy. The key point is that the symmetric collision mode does not modify the modeled diffusion tensor but it controls the effective accuracy and stability, via eigenvalue combinations of the opposite parity eigenmodes. We propose to reduce the eigenvalue spectrum by properly combining different anisotropic collision elements. The stability role of the symmetric, multiple-relaxation-times component, is further investigated with the exact von Neumann stability analysis developed in diffusion-dominant limit.

  6. Purely Lagrangian Simulation of Advection, Dispersion, Precipitation, and Dissolution

    NASA Astrophysics Data System (ADS)

    Benson, D.; Zhang, Y.; Reeves, D. M.

    2008-05-01

    We extend the advantages of Lagrangian random walk particle tracking (RWPT) methods that have long been used to simulate advection and dispersion in highly heterogeneous media. By formulating dissolution as a random, independent decay process, the classical continuum rate law is recovered. Formulating the random precipitation process requires a consideration of the probability that two nearby particles will coincide in a given time period. This depends on local mixing (as by diffusion) and the total domain particle number density, which are fixed and therefore easy to calculate. The result is that the classical law of mass action for equilibrium reactions can be reproduced in an ensemble sense. The same number of parameters for A+B ⇌ C are needed in a probabilistic versus continuum reaction simulation-- —one each for forward and backward probabilities that correspond to rates. The random nature of the simulations allows for significant disequilibrium in any given region at any time that is independent of the numerical details such as time stepping or particle density. This is exemplified by nearby or intermingled groups of reactants and little or no product--—a result that is often noted in the field that is difficult to reconcile with continuum methods or coarse-grained Eulerian models. Our results support recent results of perturbed advection-dispersion-reaction continuum models (Luo et al., WRR 44, 2008), and suggest that many different kinds of reactions can be easily added to existing RWPT codes.

  7. A cryogenic circulating advective multi-pass absorption cell

    SciTech Connect

    Stockett, M. H.; Lawler, J. E.

    2012-03-15

    A novel absorption cell has been developed to enable a spectroscopic survey of a broad range of polycyclic aromatic hydrocarbons (PAH) under astrophysically relevant conditions and utilizing a synchrotron radiation continuum to test the still controversial hypothesis that these molecules or their ions could be carriers of the diffuse interstellar bands. The cryogenic circulating advective multi-pass absorption cell resembles a wind tunnel; molecules evaporated from a crucible or injected using a custom gas feedthrough are entrained in a laminar flow of cryogenically cooled buffer gas and advected into the path of the synchrotron beam. This system includes a multi-pass optical White cell enabling absorption path lengths of hundreds of meters and a detection sensitivity to molecular densities on the order of 10{sup 7} cm{sup -3}. A capacitively coupled radio frequency dielectric barrier discharge provides ionized and metastable buffer gas atoms for ionizing the candidate molecules via charge exchange and the Penning effect. Stronger than expected clustering of PAH molecules has slowed efforts to record gas phase PAH spectra at cryogenic temperatures, though such clusters may play a role in other interstellar phenomena.

  8. A cryogenic circulating advective multi-pass absorption cell.

    PubMed

    Stockett, M H; Lawler, J E

    2012-03-01

    A novel absorption cell has been developed to enable a spectroscopic survey of a broad range of polycyclic aromatic hydrocarbons (PAH) under astrophysically relevant conditions and utilizing a synchrotron radiation continuum to test the still controversial hypothesis that these molecules or their ions could be carriers of the diffuse interstellar bands. The cryogenic circulating advective multi-pass absorption cell resembles a wind tunnel; molecules evaporated from a crucible or injected using a custom gas feedthrough are entrained in a laminar flow of cryogenically cooled buffer gas and advected into the path of the synchrotron beam. This system includes a multi-pass optical White cell enabling absorption path lengths of hundreds of meters and a detection sensitivity to molecular densities on the order of 10(7) cm(-3). A capacitively coupled radio frequency dielectric barrier discharge provides ionized and metastable buffer gas atoms for ionizing the candidate molecules via charge exchange and the Penning effect. Stronger than expected clustering of PAH molecules has slowed efforts to record gas phase PAH spectra at cryogenic temperatures, though such clusters may play a role in other interstellar phenomena. PMID:22462957

  9. Chaotic Advection, Fluid Spreading, and Groundwater Contaminant Plumes

    NASA Astrophysics Data System (ADS)

    Neupauer, R. M.; Mays, D. C.

    2011-12-01

    In situ remediation of contaminated groundwater requires degradation reactions at the interface between the contaminant plume and an injected treatment solution containing chemical or biological amendments. Therefore a promising approach to accelerate in situ remediation is to elongate the interface between the contaminant plume and treatment solution through fluid spreading. The literature on chaotic advection describes how to accomplish spreading in laminar flows, which lack the turbulent eddies that provide spreading in streams or engineered reactors. A key result from the literature on chaotic advection is that spreading is inherent in the vicinity of certain periodic points, which are points to which fluid particles return in successive iterations of chaotic flows. Specifically, spreading is enhanced near the stable and unstable manifolds associated with hyperbolic periodic points. We investigate the transient flow created with a four-well system in which wells are operated sequentially as either injection wells or extraction wells. In particular, we identify the periodic points and demonstrate that fluid spreading occurs nearby. For appropriately designed injection and extraction sequences, the periodic points are located near the interface between the contaminant plume and treatment solution, leading to elongation of the interface, with expected benefits of enhanced reaction and accelerated remediation.

  10. OBSERVATION OF MAGNETIC RECONNECTION DRIVEN BY GRANULAR SCALE ADVECTION

    SciTech Connect

    Zeng Zhicheng; Cao Wenda; Ji Haisheng

    2013-06-01

    We report the first evidence of magnetic reconnection driven by advection in a rapidly developing large granule using high spatial resolution observations of a small surge event (base size {approx} 4'' Multiplication-Sign 4'') with the 1.6 m aperture New Solar Telescope at the Big Bear Solar Observatory. The observations were carried out in narrowband (0.5 A) He I 10830 A and broadband (10 A) TiO 7057 A. Since He I 10830 A triplet has a very high excitation level and is optically thin, its filtergrams enable us to investigate the surge from the photosphere through the chromosphere into the lower corona. Simultaneous space data from the Atmospheric Imaging Assembly and Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory were used in the analysis. It is shown that the surge is spatio-temporally associated with magnetic flux emergence in the rapidly developing large granule. During the development of the granule, its advecting flow ({approx}2 km s{sup -1}) squeezed the magnetic flux into an intergranular lane area, where a magnetic flux concentration was formed and the neighboring flux with opposite magnetic polarity was canceled. During the cancellation, the surge was produced as absorption in He I 10830 A filtergrams while simultaneous EUV brightening occurred at its base. The observations clearly indicate evidence of a finest-scale reconnection process driven by the granule's motion.

  11. On the error propagation of semi-Lagrange and Fourier methods for advection problems☆

    PubMed Central

    Einkemmer, Lukas; Ostermann, Alexander

    2015-01-01

    In this paper we study the error propagation of numerical schemes for the advection equation in the case where high precision is desired. The numerical methods considered are based on the fast Fourier transform, polynomial interpolation (semi-Lagrangian methods using a Lagrange or spline interpolation), and a discontinuous Galerkin semi-Lagrangian approach (which is conservative and has to store more than a single value per cell). We demonstrate, by carrying out numerical experiments, that the worst case error estimates given in the literature provide a good explanation for the error propagation of the interpolation-based semi-Lagrangian methods. For the discontinuous Galerkin semi-Lagrangian method, however, we find that the characteristic property of semi-Lagrangian error estimates (namely the fact that the error increases proportionally to the number of time steps) is not observed. We provide an explanation for this behavior and conduct numerical simulations that corroborate the different qualitative features of the error in the two respective types of semi-Lagrangian methods. The method based on the fast Fourier transform is exact but, due to round-off errors, susceptible to a linear increase of the error in the number of time steps. We show how to modify the Cooley–Tukey algorithm in order to obtain an error growth that is proportional to the square root of the number of time steps. Finally, we show, for a simple model, that our conclusions hold true if the advection solver is used as part of a splitting scheme. PMID:25844018

  12. Use of the time fractional advection dispersion equation for push-pull tests at the Macrodispersion Experiment (MADE) site

    NASA Astrophysics Data System (ADS)

    Dean, A. M.; Benson, D. A.; Major, E.

    2010-12-01

    By adding a fractional-in-time term to the traditional advection dispersion equation, a model is able to simulate a late-time heavy-tailed contaminant breakthrough curve. This heavy-tailed breakthrough curve is observed in data collected during a conservative tracer “push-pull” test at the Macrodispersion Experiment (MADE) site. A time fractional advection dispersion equation (fADE) is able to predict power law tailing of conservative solutes by accounting for solutes transferring between the mobile and relatively immobile phases. Solutes can become trapped in a low permeability zone where the transport is controlled by diffusion instead of advection. It has been observed that the late-time heavy-tailed breakthrough curve may follow a power law due to the movement into these low flow zones. By solving the time fADE in a particle tracking program (SLIM-FAST) the model accounts for mass transfer between various phases and produces the same power law tail as observed in field data. For the implementation of the time fADE, in SLIM-FAST, the particles move based on a random-walk motion but have the ability to transition into a relatively immobile phase after (exponentially) random mobile times. Following a period in the immobile phase, the particle re-enters the mobile phase to be moved by advection and Fickian dispersion. To test the fADE approach, a recent single-well push-pull tracer test at the MADE site is reproduced using a groundwater flow code (ParFlow) and a particle tracking code (SLIM-FAST) using various immobile residence-time distributions.

  13. Algorithms and Algorithmic Languages.

    ERIC Educational Resources Information Center

    Veselov, V. M.; Koprov, V. M.

    This paper is intended as an introduction to a number of problems connected with the description of algorithms and algorithmic languages, particularly the syntaxes and semantics of algorithmic languages. The terms "letter, word, alphabet" are defined and described. The concept of the algorithm is defined and the relation between the algorithm and…

  14. Orbital Advection by Interpolation: A Fast and Accurate Numerical Scheme for Super-Fast MHD Flows

    SciTech Connect

    Johnson, B M; Guan, X; Gammie, F

    2008-04-11

    In numerical models of thin astrophysical disks that use an Eulerian scheme, gas orbits supersonically through a fixed grid. As a result the timestep is sharply limited by the Courant condition. Also, because the mean flow speed with respect to the grid varies with position, the truncation error varies systematically with position. For hydrodynamic (unmagnetized) disks an algorithm called FARGO has been developed that advects the gas along its mean orbit using a separate interpolation substep. This relaxes the constraint imposed by the Courant condition, which now depends only on the peculiar velocity of the gas, and results in a truncation error that is more nearly independent of position. This paper describes a FARGO-like algorithm suitable for evolving magnetized disks. Our method is second order accurate on a smooth flow and preserves {del} {center_dot} B = 0 to machine precision. The main restriction is that B must be discretized on a staggered mesh. We give a detailed description of an implementation of the code and demonstrate that it produces the expected results on linear and nonlinear problems. We also point out how the scheme might be generalized to make the integration of other supersonic/super-fast flows more efficient. Although our scheme reduces the variation of truncation error with position, it does not eliminate it. We show that the residual position dependence leads to characteristic radial variations in the density over long integrations.

  15. Simulation of Field-Scale Non-Fickian Plumes With Spatiotemporal Fractional Advection- Dispersion Equations

    NASA Astrophysics Data System (ADS)

    Benson, D. A.; Zhang, Y.

    2006-12-01

    Conservative solute transport through natural media is typically "anomalous" or non-Fickian. The anomalous transport may be characterized by faster than linear growth of the centered second moment, or non-Gaussian leading or trailing edges of a plume emanating from a point source. These characteristics develop because of non-local dependence on either past (time) or far upstream (space) concentrations. Non-local equations developed to describe anomalous dispersion usually focus on constant transport parameters and/or independence of the transport on space dimension. These simplifications have been useful for fitting simple transport processes, such as laboratory column tests or 1-D projections of field data. However, they may be insufficient for real field settings, where direction-dependent depositional processes and nonstationary heterogeneity can occur. We develop a generalized, multi-dimensional, spatiotemporal fractional advection- dispersion equation (fADE) with variable parameters to characterize regional-scale anomalous dispersion processes including trapping in immobile zones and/or super-Fickian rapid transport. A Lagrangian numerical model of the space-time fractional transport equation is developed in which solute particles can disperse in both space and time, depending on the medium heterogeneity properties, such as the connectivity and statistical distributions of high versus low-permeability deposits. In the generalized fADE, the range of the order of fractional time derivative is (0 2], representing a wide range of possible trapping behavior. The extension of the order to the range (1 2] is novel to transport theory. We apply the numerical model in 1-D and 2-D to the MADE site tritium plumes, and results indicate that this method can capture the main behaviors of realistic plumes, including local variations of spreading, direction-dependent scaling rates, and arbitrary rapid transport along preferential flow paths. Since the governing equation

  16. Enhanced transpiration by riparian buffer trees in response to advection in a humid temperate agricultural landscape

    USGS Publications Warehouse

    Hernandez-Santana, V.; Asbjornsen, H.; Sauer, T.; Isenhart, T.; Schilling, K.; Schultz, Ronald

    2011-01-01

    Riparian buffers are designed as management practices to increase infiltration and reduce surface runoff and transport of sediment and nonpoint source pollutants from crop fields to adjacent streams. Achieving these ecosystem service goals depends, in part, on their ability to remove water from the soil via transpiration. In these systems, edges between crop fields and trees of the buffer systems can create advection processes, which could influence water use by trees. We conducted a field study in a riparian buffer system established in 1994 under a humid temperate climate, located in the Corn Belt region of the Midwestern U.S. (Iowa). The goals were to estimate stand level transpiration by the riparian buffer, quantify the controls on water use by the buffer system, and determine to what extent advective energy and tree position within the buffer system influence individual tree transpiration rates. We primarily focused on the water use response (determined with the Heat Ratio Method) of one of the dominant species (Acer saccharinum) and a subdominant (Juglans nigra). A few individuals of three additional species (Quercus bicolor, Betula nigra, Platanus occidentalis) were monitored over a shorter time period to assess the generality of responses. Meteorological stations were installed along a transect across the riparian buffer to determine the microclimate conditions. The differences found among individuals were attributed to differences in species sap velocities and sapwood depths, location relative to the forest edge and prevailing winds and canopy exposure and dominance. Sapflow rates for A. saccharinum trees growing at the SE edge (prevailing winds) were 39% greater than SE interior trees and 30% and 69% greater than NW interior and edge trees, respectively. No transpiration enhancement due to edge effect was detected in the subdominant J. nigra. The results were interpreted as indicative of advection effects from the surrounding crops. Further, significant

  17. Simulation of advective flow under steady-state and transient recharge conditions, Camp Edwards, Massachusetts Military Reservation, Cape Cod, Massachusetts

    USGS Publications Warehouse

    Walter, Donald A.; Masterson, John P.

    2003-01-01

    The U.S. Geological Survey has developed several ground-water models in support of an investigation of ground-water contamination being conducted by the Army National Guard Bureau at Camp Edwards, Massachusetts Military Reservation on western Cape Cod, Massachusetts. Regional and subregional steady-state models and regional transient models were used to (1) improve understanding of the hydrologic system, (2) simulate advective transport of contaminants, (3) delineate recharge areas to municipal wells, and (4) evaluate how model discretization and time-varying recharge affect simulation results. A water-table mound dominates ground-water-flow patterns. Near the top of the mound, which is within Camp Edwards, hydraulic gradients are nearly vertically downward and horizontal gradients are small. In downgradient areas that are further from the top of the water-table mound, the ratio of horizontal to vertical gradients is larger and horizontal flow predominates. The steady-state regional model adequately simulates advective transport in some areas of the aquifer; however, simulation of ground-water flow in areas with local hydrologic boundaries, such as ponds, requires more finely discretized subregional models. Subregional models also are needed to delineate recharge areas to municipal wells that are inadequately represented in the regional model or are near other pumped wells. Long-term changes in recharge rates affect hydraulic heads in the aquifer and shift the position of the top of the water-table mound. Hydraulic-gradient directions do not change over time in downgradient areas, whereas they do change substantially with temporal changes in recharge near the top of the water-table mound. The assumption of steady-state hydraulic conditions is valid in downgradient area, where advective transport paths change little over time. In areas closer to the top of the water-table mound, advective transport paths change as a function of time, transient and steady-state paths

  18. Electron density and transport in top-gated graphene nanoribbon devices: First-principles Green function algorithms for systems containing a large number of atoms

    NASA Astrophysics Data System (ADS)

    Areshkin, Denis A.; Nikolić, Branislav K.

    2010-04-01

    The recent fabrication of graphene nanoribbon (GNR) field-effect transistors poses a challenge for first-principles modeling of carbon nanoelectronics due to many thousand atoms present in the device. The state of the art quantum transport algorithms, based on the nonequilibrium Green function formalism combined with the density-functional theory (NEGF-DFT), were originally developed to calculate self-consistent electron density in equilibrium and at finite bias voltage (as a prerequisite to obtain conductance or current-voltage characteristics, respectively) for small molecules attached to metallic electrodes where only a few hundred atoms are typically simulated. Here we introduce combination of two numerically efficient algorithms which make it possible to extend the NEGF-DFT framework to device simulations involving large number of atoms. Our first algorithm offers an alternative to the usual evaluation of the equilibrium part of electron density via numerical contour integration of the retarded Green function in the upper complex half-plane. It is based on the replacement of the Fermi function f(E) with an analytic function f˜(E) coinciding with f(E) inside the integration range along the real axis, but decaying exponentially in the upper complex half-plane. Although f˜(E) has infinite number of poles, whose positions and residues are determined analytically, only a finite number of those poles have non-negligible residues. We also discuss how this algorithm can be extended to compute the nonequilibrium contribution to electron density, thereby evading cumbersome real-axis integration (within the bias voltage window) of NEGFs which is very difficult to converge for systems with large number of atoms while maintaining current conservation. Our second algorithm combines the recursive formulas with the geometrical partitioning of an arbitrary multiterminal device into nonuniform segments in order to reduce the computational complexity of the retarded Green

  19. On enforcing maximum principles and achieving element-wise species balance for advection-diffusion-reaction equations under the finite element method

    NASA Astrophysics Data System (ADS)

    Mudunuru, M. K.; Nakshatrala, K. B.

    2016-01-01

    We present a robust computational framework for advective-diffusive-reactive systems that satisfies maximum principles, the non-negative constraint, and element-wise species balance property. The proposed methodology is valid on general computational grids, can handle heterogeneous anisotropic media, and provides accurate numerical solutions even for very high Péclet numbers. The significant contribution of this paper is to incorporate advection (which makes the spatial part of the differential operator non-self-adjoint) into the non-negative computational framework, and overcome numerical challenges associated with advection. We employ low-order mixed finite element formulations based on least-squares formalism, and enforce explicit constraints on the discrete problem to meet the desired properties. The resulting constrained discrete problem belongs to convex quadratic programming for which a unique solution exists. Maximum principles and the non-negative constraint give rise to bound constraints while element-wise species balance gives rise to equality constraints. The resulting convex quadratic programming problems are solved using an interior-point algorithm. Several numerical results pertaining to advection-dominated problems are presented to illustrate the robustness, convergence, and the overall performance of the proposed computational framework.

  20. Mobile scintillometry to study heat advection over heterogeneous surfaces

    NASA Astrophysics Data System (ADS)

    Kleissl, J.

    2007-12-01

    Large Aperture Scintillometer (LAS) receivers measure the structure parameter of the refractive index from intensity fluctuations of the transmitter beam. Due to the spatial averaging over 1-4 km employed by this emerging technique the constraints for long temporal averaging (15-30 min) and associated uncertainties that have to be met by other flux measurement techniques do not apply for LASs. In this paper the constraints for temporal averaging of LASs will be examined as a function of environmental conditions and transect geometry. Moreover, analysis of data from a mobile LAS measurement across a surface gradient from rough and dry to smoother and wet will be presented. In this experiment the LAS was mounted on a pickup truck, allowing for quick redeployment of the transect after meaurement. The potential for the use of LAS to study local advection of heat in riparian or irrigated areas in the semi-arid southwest will be evaluated.

  1. Deconvolved spectra of Two Component Advective Flow including jet

    NASA Astrophysics Data System (ADS)

    Mondal, Santanu; Debnath, Dipak; Chakrabarti, Sandip Kumar

    2016-07-01

    Outflows and winds are produced when the accretion flows have positive specific energy. Two Component Advective Flow (TCAF) model suggests that the centrifugal pressure supported region of the flow outside the black hole horizon, acts as the base of this outflow. We study the spectral properties of the TCAF which includes a jet component. We consider the jet as a conical in shape which also up-scatters the soft photons from the Keplerian disc. We see that due to the presence of jet component, spectrum become harder as the jet itself behaves like an another Compton cloud above the inner hot corona. We also see how the jet spectra depends on the flow rates. This gives the direct link in timing properties of the X-rays in CENBOL component and the radiation emitted in the jet component.

  2. Carbon dioxide degassing by advective flow from Usu volcano, Japan.

    PubMed

    Hernández, P A; Notsu, K; Salazar, J M; Mori, T; Natale, G; Okada, H; Virgili, G; Shimoike, Y; Sato, M; Pérez, N M

    2001-04-01

    Magmatic carbon dioxide (CO2) degassing has been documented before the 31 March 2000 eruption of Usu volcano, Hokkaido, Japan. Six months before the eruption, an increase in CO2 flux was detected on the summit caldera, from 120 (September 1998) to 340 metric tons per day (September 1999), followed by a sudden decrease to 39 metric tons per day in June 2000, 3 months after the eruption. The change in CO2 flux and seismic observations suggests that before the eruption, advective processes controlled gas migration toward the surface. The decrease in flux after the eruption at the summit caldera could be due to a rapid release of CO2 during the eruption from ascending dacitic dikes spreading away from the magma chamber beneath the caldera. PMID:11292867

  3. Unification of some advection schemes in two dimensions

    NASA Technical Reports Server (NTRS)

    Sidilkover, D.; Roe, P. L.

    1995-01-01

    The relationship between two approaches towards construction of genuinely two-dimensional upwind advection schemes is established. One of these approaches is of the control volume type applicable on structured cartesian meshes. It resulted in the compact high resolution schemes capable of maintaining second order accuracy in both homogeneous and inhomogeneous cases. Another one is the fluctuation splitting approach, which is well suited for triangular (and possibly) unstructured meshes. Understanding the relationship between these two approaches allows us to formulate here a new fluctuation splitting high resolution (i.e. possible use of artificial compression, while maintaining positivity property) scheme. This scheme is shown to be linearity preserving in inhomogeneous as well as homogeneous cases.

  4. Frictional drag reduction by wavy advection of deformable bubbles

    NASA Astrophysics Data System (ADS)

    Oishi, Yoshihiko; Murai, Yuichi; Tasaka, Yuji; Yasushi, Takeda

    2009-02-01

    Bubbles can reduce frictional drag in wall turbulence, and its effect is expected to use for ships and pipelines to save their power consumptions. A number of basic experiments have been carried out to date for finding out the best condition for enhancing the drag reduction. One issue that remains at present is the difference of the performance between steady and unsteady status in terms of bubble concentration. All the experiments in the past deal with the steady effect, i.e., the drag reduction is evaluated as a function of mean void fraction or given gas flow rate of continuous injection. Despite to this, the actual phenomena highly depend on local interaction between two phases upon unsteady manner. We focus on this point and elucidate the influence of time-fluctuating void fraction on the total response to the drag reduction. This view is in fact important to estimate the persistency of the bubble-based drag reduction in the flow direction since bubbles formulate wavy advection during their migration. Our experiments are designed to measure the above-mentioned effect from laminar, transitional, and turbulent flows in a horizontal channel. For avoiding the contamination effect that worsens the reproducibility of the experiment, Silicone oil is used as carrier fluid. The oil also simulates the high Weber number bubble condition because of low surface tension. The unsteady interaction between the wavy advection of bubbles and the local skin friction, a synchronized system is constructed to connect the high-speed camera with the shear transducer, which can evaluate the interaction at 1000 fps. From the results, we confirm that the drag reduction is provided at Re>3000 in the turbulent flow regime, and also the total drag reduction is enhanced by the presence of the waves.

  5. Multirate Runge-Kutta schemes for advection equations

    NASA Astrophysics Data System (ADS)

    Schlegel, Martin; Knoth, Oswald; Arnold, Martin; Wolke, Ralf

    2009-04-01

    Explicit time integration methods can be employed to simulate a broad spectrum of physical phenomena. The wide range of scales encountered lead to the problem that the fastest cell of the simulation dictates the global time step. Multirate time integration methods can be employed to alter the time step locally so that slower components take longer and fewer time steps, resulting in a moderate to substantial reduction of the computational cost, depending on the scenario to simulate [S. Osher, R. Sanders, Numerical approximations to nonlinear conservation laws with locally varying time and space grids, Math. Comput. 41 (1983) 321-336; H. Tang, G. Warnecke, A class of high resolution schemes for hyperbolic conservation laws and convection-diffusion equations with varying time and pace grids, SIAM J. Sci. Comput. 26 (4) (2005) 1415-1431; E. Constantinescu, A. Sandu, Multirate timestepping methods for hyperbolic conservation laws, SIAM J. Sci. Comput. 33 (3) (2007) 239-278]. In air pollution modeling the advection part is usually integrated explicitly in time, where the time step is constrained by a locally varying Courant-Friedrichs-Lewy (CFL) number. Multirate schemes are a useful tool to decouple different physical regions so that this constraint becomes a local instead of a global restriction. Therefore it is of major interest to apply multirate schemes to the advection equation. We introduce a generic recursive multirate Runge-Kutta scheme that can be easily adapted to an arbitrary number of refinement levels. It preserves the linear invariants of the system and is of third order accuracy when applied to certain explicit Runge-Kutta methods as base method.

  6. Examination of the evolution of radiation and advection fogs. Final report

    SciTech Connect

    Orgill, M.M.

    1993-01-01

    A literature study was done on radiation and advection fog evolution. For radiation fog, six stages of fog evolution have been identified -- (1) precursor, (2) sunset, (3) conditioning, (4) mature, (5) sunrise, and (6) dissipation. The evolution of advection fog models has been in parallel with radiation fog models, but no identified stages in the evolution of advection fog have been proposed: (1) precursor, (2) initiation, (3) mature, and (4) dissipation. Radiation and advection fog models will require greater sophistication in order to study fog spatial and temporal variability. Physical aspects that require further study are discussed.

  7. Chaotic advection and nonlinear resonances in an oceanic flow above submerged obstacle

    NASA Astrophysics Data System (ADS)

    Koshel, K. V.; Sokolovskiy, M. A.; Davies, P. A.

    2008-10-01

    The effect of an isolated submarine obstacle on the motion of fluid particles in a periodic external flow is studied within the framework of the barotropic, quasi-geostrophic approximation on f-plane. The concept of background currents advanced by Kozlov [1995. Background currents in geophysical hydrodynamics. Izvestia, Atmos. Oceanic Phys. 31 (2), 245-250] is used to construct a dynamically consistent stream function satisfying the potential vorticity conservation law. It is shown that a system of two topographic vortices revolving about a rotation center can form in a circular external flow. Unsteady periodic perturbations, associated with either variations in the background current or deviations of the external flow from circulation, are analyzed. Unsteadiness in the external flow essentially complicates the pattern of the motion of fluid particles. Vortex-type quasi-periodic structures, identified with nonlinear resonances that form in Lagrangian equations of fluid particle advection, are examined. They either surround the stationary configuration by a vortex chain—a ringlet-like structure [ Kennelly, M.A., Evans, R.H., Joyce, T.M., 1985. Small-scale cyclones on the periphery of Gulf Stream warm-core rings. J. Geophys. Res. 90(5), 8845-8857], or they form a complex-structure multivortex domain. Asymptotic estimates and numerical modeling are used to study the distribution and widths of the nonlinear resonance domains that appear under unsteady perturbations of different types. The onset of chaotic regimes owing to the overlapping of nonlinear resonance domains is analyzed. Transport fluxes determined by chaotic advection and barriers for transport (KAM-tori) and the conditions of their existence are studied. The relation of the rotation frequency of fluid particles on their initial position (when the dependence is calculated in the undisturbed system) is shown to completely determine the main features of the pattern of Lagrangian trajectories and chaotization

  8. Advective, Diffusive and Eruptive Leakage of CO2 and Brine within Fault Zone

    NASA Astrophysics Data System (ADS)

    Jung, N. H.; Han, W. S.

    2014-12-01

    This study investigated a natural analogue for CO2 leakage near the Green River, Utah, aiming to understand the influence of various factors on CO2 leakage and to reliably predict underground CO2 behavior after injection for geologic CO2 sequestration. Advective, diffusive, and eruptive characteristics of CO2 leakage were assessed via a soil CO2 flux survey and numerical modeling. The field results show anomalous CO2 fluxes (> 10 g m-2 d-1) along the faults, particularly adjacent to CO2-driven cold springs and geysers (e.g., 36,259 g m-2 d-1 at Crystal Geyser), ancient travertines (e.g., 5,917 g m-2 d-1), joint zones in sandstone (e.g., 120 g m-2 d-1), and brine discharge zones (e.g., 5,515 g m-2 d-1). Combined to similar isotopic ratios of gas and progressive evolution of brine chemistry at springs and geysers, a gradual decrease of soil CO2 flux from the Little Grand Wash (LGW; ~36,259 g m-2 d-1) to Salt Wash (SW; ~1,428 g m-2 d-1) fault zones reveals the same CO2 origin and potential southward transport of CO2 over 10-20 km. The numerical simulations overtly exhibit lateral transport of free CO2 and CO2-rich brine from the LGW to SW fault zones through the regional aquifers (e.g., Entrada, Navajo, Kayenta, Wingate, White Rim). CO2 travels predominantly as an aqueous phase (Xco2=~0.045) as previously suggested, giving rise to the convective instability that further accelerates CO2 dissolution. While the buoyant free CO2 always tends to ascend, a fraction of dense CO2-rich brine flows laterally into the aquifer and mixes with the formation fluids during upward migration along the fault. The fault always enhances advective CO2 transport regardless of its permeability (k). However, only the low-k fault scenario engenders development of CO2 anticlinal trap within the shallow aquifers (Entrada and Navajo), concentrating high CO­­­2 fluxes (~1,273 g m-2 d-1) within the northern footwall of the LGW fault similar to the field. Moreover, eruptive CO2 leakage at a well

  9. MICADO: Parallel implementation of a 2D-1D iterative algorithm for the 3D neutron transport problem in prismatic geometries

    SciTech Connect

    Fevotte, F.; Lathuiliere, B.

    2013-07-01

    The large increase in computing power over the past few years now makes it possible to consider developing 3D full-core heterogeneous deterministic neutron transport solvers for reference calculations. Among all approaches presented in the literature, the method first introduced in [1] seems very promising. It consists in iterating over resolutions of 2D and ID MOC problems by taking advantage of prismatic geometries without introducing approximations of a low order operator such as diffusion. However, before developing a solver with all industrial options at EDF, several points needed to be clarified. In this work, we first prove the convergence of this iterative process, under some assumptions. We then present our high-performance, parallel implementation of this algorithm in the MICADO solver. Benchmarking the solver against the Takeda case shows that the 2D-1D coupling algorithm does not seem to affect the spatial convergence order of the MOC solver. As for performance issues, our study shows that even though the data distribution is suited to the 2D solver part, the efficiency of the ID part is sufficient to ensure a good parallel efficiency of the global algorithm. After this study, the main remaining difficulty implementation-wise is about the memory requirement of a vector used for initialization. An efficient acceleration operator will also need to be developed. (authors)

  10. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

    USGS Publications Warehouse

    Bachand, P.A.M.; S. Bachand; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

    2014-01-01

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal

  11. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone.

    PubMed

    Bachand, P A M; Bachand, S; Fleck, J; Anderson, F; Windham-Myers, L

    2014-06-15

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flow rates and tracer concentrations at wetland inflows and outflows. We used two ideal reactor model solutions, a continuous flow stirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these non-ideal agricultural wetlands in which check ponds are in series. Using a flux model, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment-water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemical mechanisms affecting dissolved constituent cycling in the root zone. In addition, our understanding of

  12. Reliability analysis of contaminant transport in saturated porous media

    SciTech Connect

    Jang, Yeon-Soo; Sitar, N.; Der Kiureghian, A. )

    1994-08-01

    An approach to probabilistic analysis of contaminant transport based on first- and second-order reliability methods (FORM and SORM) is presented. In addition, system reliability methodology is introduced for the analysis of problems with more than one limit state function. Conventional one-dimensional finite difference and two-dimensional finite element models are coupled with the FORM and SORM algorithms to perform reliability analyses of advection-dominated contaminant transport. A comparison of the results of FORM and SORM analyses with the results of Monte Carlo simulations shows that FORM tends to overestimate the probability of exceedence in spatially variable domains. However, SORM accounts for the nonlinearity of the limit state surface and remains accurate, giving results consistent with Monte Carlo simulation. Finally, while the analyses presented here considered relatively simple problems, the methodology is shown to have the necessary flexibility for application to problems of practical interest.

  13. Flow networks: A characterization of geophysical fluid transport

    NASA Astrophysics Data System (ADS)

    Ser-Giacomi, Enrico; Rossi, Vincent; López, Cristóbal; Hernández-García, Emilio

    2015-03-01

    We represent transport between different regions of a fluid domain by flow networks, constructed from the discrete representation of the Perron-Frobenius or transfer operator associated to the fluid advection dynamics. The procedure is useful to analyze fluid dynamics in geophysical contexts, as illustrated by the construction of a flow network associated to the surface circulation in the Mediterranean sea. We use network-theory tools to analyze the flow network and gain insights into transport processes. In particular, we quantitatively relate dispersion and mixing characteristics, classically quantified by Lyapunov exponents, to the degree of the network nodes. A family of network entropies is defined from the network adjacency matrix and related to the statistics of stretching in the fluid, in particular, to the Lyapunov exponent field. Finally, we use a network community detection algorithm, Infomap, to partition the Mediterranean network into coherent regions, i.e., areas internally well mixed, but with little fluid interchange between them.

  14. Effects of thinning on transpiration by riparian buffer trees in response to advection and solar radiation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Advective energy occurring in edge environments may increase tree water use (e.g., latent heat loss, LE > net radiation, Rn). In humid agricultural landscapes, advection-enhanced transpiration in riparian buffers may provide hydrologic regulation and flood control benefits; however, research in humi...

  15. Effects of thinning on transpiration by riparian buffer trees in response to advection and solar radiation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Advective energy occurring in edge environments may increase tree water use. In humid agricultural landscapes, advection-enhanced transpiration in riparian buffers may provide hydrologic regulation; however, research in humid environments is lacking. The objectives of this study were to determine ho...

  16. Estimation of sediment transport with an in-situ acoustic retrieval algorithm in the high-turbidity Changjiang Estuary, China

    NASA Astrophysics Data System (ADS)

    Ge, Jian-zhong; Ding, Ping-xing; Li, Cheng; Fan, Zhong-ya; Shen, Fang; Kong, Ya-zhen

    2015-12-01

    A comprehensive acoustic retrieval algorithm to investigate suspended sediment is presented with the combined validations of Acoustic Doppler Current Profiler (ADCP) and Optical Backscattering Sensor (OBS) monitoring along seven cross-channel sections in the high-turbidity North Passage of the Changjiang Estuary, China. The realistic water conditions, horizontal and vertical salinities, and grain size of the suspended sediment are considered in the retrieval algorithm. Relations between net volume scattering of sound attenuation ( S v ) due to sediments and ADCP echo intensity ( E) were obtained with reasonable accuracy after applying the linear regression method. In the river mouth, an intensive vertical stratification and horizontal inhomogeneity were found, with a higher concentration of sediment in the North Passage and a lower concentration in the North Channel and South Passage. Additionally, The North Passage is characterized by higher sediment concentration in the middle region and lower concentration in the entrance and outlet areas. The maximum sediment flux rate, occurred in the middle region, could reach 6.3×105 and 1.5×105 t/h during the spring and neap tide, respectively. Retrieved sediment fluxes in the middle region are significantly larger than that in the upstream and downstream region. This strong sediment imbalance along the main channel indicates potential secondary sediment supply from southern Jiuduansha Shoals.

  17. MAST solution of advection problems in irrotational flow fields

    NASA Astrophysics Data System (ADS)

    Aricò, Costanza; Tucciarelli, Tullio

    2007-03-01

    A new numerical-analytical Eulerian procedure is proposed for the solution of convection-dominated problems in the case of existing scalar potential of the flow field. The methodology is based on the conservation inside each computational elements of the 0th and 1st order effective spatial moments of the advected variable. This leads to a set of small ODE systems solved sequentially, one element after the other over all the computational domain, according to a MArching in Space and Time technique. The proposed procedure shows the following advantages: (1) it guarantees the local and global mass balance; (2) it is unconditionally stable with respect to the Courant number, (3) the solution in each cell needs information only from the upstream cells and does not require wider and wider stencils as in most of the recently proposed higher-order methods; (4) it provides a monotone solution. Several 1D and 2D numerical test have been performed and results have been compared with analytical solutions, as well as with results provided by other recent numerical methods.

  18. Sea breezes and advective effects in southwest James Bay

    NASA Technical Reports Server (NTRS)

    Mckendry, Ian; Roulet, Nigel

    1994-01-01

    Observations from a transect extending 100 km inland during the Northern Wetlands Study (NOWES) in 1990 show that the sea breeze develops on approximately 25% of days during summer and may penetrate up to 100 km inland on occasions. The sea breeze exhibits a marked diurnal clockwise rotation as a result of the Coriolis effect along the unobstructed coastline. The marine advective effect is shown to depend on gradient wind direction. With northwesterly upper level flow the sea breeze tends to be northeasterly in direction and is associated with decreased temperatures and vapor pressure deficits (VPD). With southwesterly upper level flow the sea breeze tends to have a southeasterly direction and less effect on temperatures and VPD. This is attributed to shorter residence times of air parcels over water. For two cases, Colorado State University mesoscale model simulations show good agreement with surface wind observations and suggest that under northwesterly gradient flow, Bowen ratios are increased in the onshore flow along western James Bay, while during southwesterly gradient flow these effects are negligible. These results have implications for the interpretation of local climate, ecology, and hydrology as well as land-based and airborne turbulent flux measurements made during NOWES.

  19. Implementation of two-component advective flow solution in XSPEC

    NASA Astrophysics Data System (ADS)

    Debnath, Dipak; Chakrabarti, Sandip K.; Mondal, Santanu

    2014-05-01

    Spectral and temporal properties of black hole candidates can be explained reasonably well using Chakrabarti-Titarchuk solution of two-component advective flow (TCAF). This model requires two accretion rates, namely the Keplerian disc accretion rate and the halo accretion rate, the latter being composed of a sub-Keplerian, low-angular-momentum flow which may or may not develop a shock. In this solution, the relevant parameter is the relative importance of the halo (which creates the Compton cloud region) rate with respect to the Keplerian disc rate (soft photon source). Though this model has been used earlier to manually fit data of several black hole candidates quite satisfactorily, for the first time, we made it user friendly by implementing it into XSPEC software of Goddard Space Flight Center (GSFC)/NASA. This enables any user to extract physical parameters of the accretion flows, such as two accretion rates, the shock location, the shock strength, etc., for any black hole candidate. We provide some examples of fitting a few cases using this model. Most importantly, unlike any other model, we show that TCAF is capable of predicting timing properties from the spectral fits, since in TCAF, a shock is responsible for deciding spectral slopes as well as quasi-periodic oscillation frequencies. L86

  20. Revisiting the Rossby Haurwitz wave test case with contour advection

    NASA Astrophysics Data System (ADS)

    Smith, Robert K.; Dritschel, David G.

    2006-09-01

    This paper re-examines a basic test case used for spherical shallow-water numerical models, and underscores the need for accurate, high resolution models of atmospheric and ocean dynamics. The Rossby-Haurwitz test case, first proposed by Williamson et al. [D.L. Williamson, J.B. Drake, J.J. Hack, R. Jakob, P.N. Swarztrauber, A standard test set for numerical approximations to the shallow-water equations on the sphere, J. Comput. Phys. (1992) 221-224], has been examined using a wide variety of shallow-water models in previous papers. Here, two contour-advective semi-Lagrangian (CASL) models are considered, and results are compared with previous test results. We go further by modifying this test case in a simple way to initiate a rapid breakdown of the basic wave state. This breakdown is accompanied by the formation of sharp potential vorticity gradients (fronts), placing far greater demands on the numerics than the original test case does. We also go further by examining other dynamical fields besides the height and potential vorticity, to assess how well the models deal with gravity waves. Such waves are sensitive to the presence or not of sharp potential vorticity gradients, as well as to numerical parameter settings. In particular, large time steps (convenient for semi-Lagrangian schemes) can seriously affect gravity waves but can also have an adverse impact on the primary fields of height and velocity. These problems are exacerbated by a poor resolution of potential vorticity gradients.

  1. Validation of a coupled reactive transport code in porous media

    NASA Astrophysics Data System (ADS)

    Mugler, C.; Montarnal, P.; Dimier, A.

    2003-04-01

    The safety assessment of nuclear waste disposals needs to predict the migration of radionuclides and chemical species through a geological medium. It is therefore necessary to develop and assess qualified and validated tools which integrate both the transport mechanisms through the geological media and the chemical mechanisms governing the mobility of radionuclides. In this problem, both geochemical and hydrodynamic phenomena are tightly linked together. That is the reason why the French Nuclear Energy Agency (CEA) and the French Agency for the Management of Radioactive Wastes (ANDRA) are conjointly developping a coupled reactive transport code that solves simultaneously a geochemical model and a transport model. This code, which is part of the software project ALLIANCES, leans on the libraries of two geochemical codes solving the complex ensemble of reacting chemical species: CHESS and PHREEQC. Geochemical processes considered here include ion exchange, redox reactions, acid-base reactions, surface complexation and mineral dissolution and/or precipitation. Transport is simulated using the mixed-hybrid finite element scheme CAST3M or the finite volume scheme MT3D. All together solve Darcy's law and simulate several hydrological processes such as advection, diffusion and dispersion. The coupling algorithm is an iterative sequential algorithm. Several analytical test cases have been defined and used to validate the reactive transport code. Numerical results can be compared to analytical solutions.

  2. Tomography-based characterization of ice-air interface dynamics of temperature gradient snow metamorphism under advective conditions

    NASA Astrophysics Data System (ADS)

    Ebner, Pirmin Philipp; Andreoli, Christian; Schneebeli, Martin; Steinfeld, Aldo

    2015-12-01

    Snow at or close to the surface commonly undergoes temperature gradient metamorphism under advective flow, which alters its microstructure and physical properties. A functional understanding of this process is essential for many disciplines, from modeling the effects of snow on regional and global climate to assessing avalanche formation. Time-lapse X-ray microtomography was applied to investigate the structural dynamics of temperature gradient snow metamorphism exposed to an advective airflow in controlled laboratory conditions. Experiments specifically analyzed sublimation and deposition of water vapor on the ice structure. In addition, an analysis of the ice-air interface dynamics was carried out using a macroscopic equivalent model of heat and water vapor transport through a snow layer. The results indicate that sublimation of the ice matrix dominated for flow rates < 10-6 m3 s-1 while during increased mass flow rates the water vapor deposition supplied by the advective flow counteracted sublimation. A flow rate dependence of water vapor deposition at the ice interface was observed, asymptotically approaching an average estimated maximum deposition rate on the whole sample of 1.05 · 10-4 kg m-3 s-1. The growth of microsized whisker-like crystals on larger ice crystals was detected on microscope photographs, leading to an increase of the specific surface area and thus suggest a change of the physical and optical properties of the snow. The estimated values of the curvature effect of the ice crystals and the interface kinetic coefficient are in good agreement with previously published values.

  3. Heat advection processes leading to El Niño events as depicted by an ensemble of ocean assimilation products

    NASA Astrophysics Data System (ADS)

    Ballester, Joan; Bordoni, Simona; Petrova, Desislava; Rodó, Xavier

    2016-06-01

    The oscillatory nature of El Niño-Southern Oscillation results from an intricate superposition of near-equilibrium balances and out-of-phase disequilibrium processes between the ocean and the atmosphere. The main objective of the present work is to perform an exhaustive spatiotemporal analysis of the upper ocean heat budget in an ensemble of state-of-the-art ocean assimilation products. We put specific emphasis on the ocean heat advection mechanisms, and their representation in individual ensemble members and in the different stages of the ENSO oscillation leading to EN events. Our analyses consistently show that the initial subsurface warming in the western equatorial Pacific is advected to the central Pacific by the equatorial undercurrent, which, together with the equatorward advection associated with anomalies in both the meridional temperature gradient and circulation at the level of the thermocline, explains the heat buildup in the central Pacific during the recharge phase. We also find that the recharge phase is characterized by an increase of meridional tilting of the thermocline, as well as a southward upper-ocean cross-equatorial mass transport resulting from Ekman-induced anomalous vertical motion in the off-equatorial regions. Although differences between data sets are generally small, and anomalies tend to have the same sign, the differences in the magnitude of the meridional term are seen to be key for explaining the different propagation speed of the subsurface warming tendency along the thermocline. The only exception is GECCO, which does not produce the patterns of meridional surface Ekman divergence (subsurface Sverdrup convergence) in the western and central equatorial Pacific.

  4. PROBLEM OF COMPLEX EIGENSYSTEMS INTHE SEMIANALYTICAL SOLUTION FOR ADVANCEMENT OF TIME IN SOLUTE TRANSPORT SIMULATIONS: A NEW METHOD USING REAL ARITHMETIC.

    USGS Publications Warehouse

    Umari, Amjad M. J.; Gorelick, Steven M.

    1986-01-01

    In the numerical modeling of groundwater solute transport, explicit solutions may be obtained for the concentration field at any future time without computing concentrations at intermediate times. The spatial variables are discretized and time is left continuous inthe governing differnetial equation. These semianalytical solutions have been presented in the literature and involve the eigensystem of a coefficient matrix. This eigensystem may be complex (i. e. , have imaginary components) due to the asymmetry created by the advection term in the governing advection-dispersionequation. It is shown here that the error due to ignoring the imaginary components of complex eigenvalues is large for small dispersivity values. A new algorithm that represents the complex eigensystem by converting it to a real eigensystem is presented. The method requires only real arithmetic.

  5. Development of algorithms for using satellite meteorological data sets to study global transport of stratospheric aerosols and ozone

    NASA Technical Reports Server (NTRS)

    Want, P. H.; Deepak, A.

    1985-01-01

    The utilization of stratospheric aerosol and ozone measurements obtained from the NASA developed SAM II and SAGE satellite instruments were investigated for their global scale transports. The stratospheric aerosols showed that during the stratospheric warming of the winter 1978 to 1979, the distribution of the zonal mean aerosol extinction ratio in the northern high latitude exhibited distinct changes. Dynamic processes might have played an important role in maintenance role in maintenance of this zonal mean distribution. As to the stratospheric ozone, large poleward ozone transports are shown to occur in the altitude region from 24 km to 38 km near 55N during this warming. This altitude region is shown to be a transition region of the phase relationship between ozone and temperature waves from an in-phase one above 38 km. It is shown that the ozone solar heating in the upper stratosphere might lead to enhancement of the damping rate of the planetary waves due to infrared radiation alone in agreement with theoretical analyses and an earlier observational study.

  6. Applying dispersive changes to Lagrangian particles in groundwater transport models

    USGS Publications Warehouse

    Konikow, Leonard F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative.

  7. Applying Dispersive Changes to Lagrangian Particles in Groundwater Transport Models

    USGS Publications Warehouse

    Konikow, L.F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative. ?? US Government 2010.

  8. Round window membrane intracochlear drug delivery enhanced by induced advection.

    PubMed

    Borkholder, David A; Zhu, Xiaoxia; Frisina, Robert D

    2014-01-28

    Delivery of therapeutic compounds to the inner ear via absorption through the round window membrane (RWM) has advantages over direct intracochlear infusions; specifically, minimizing impact upon functional hearing measures. However, previous reports show that significant basal-to-apical concentration gradients occur, with the potential to impact treatment efficacy. Here we present a new approach to inner ear drug delivery with induced advection aiding distribution of compounds throughout the inner ear in the murine cochlea. Polyimide microtubing was placed near the RWM niche through a bullaostomy into the middle ear cavity allowing directed delivery of compounds to the RWM. We hypothesized that a posterior semicircular canalostomy would induce apical flow from the patent cochlear aqueduct to the canalostomy due to influx of cerebral spinal fluid. To test this hypothesis, young adult CBA/CaJ mice were divided into two groups: bullaostomy approach only (BA) and bullaostomy+canalostomy (B+C). Cochlear function was evaluated by distortion product otoacoustic emission (DPOAE) and auditory brainstem response (ABR) thresholds during and after middle ear infusion of salicylate in artificial perilymph (AP), applied near the RWM. The mice recovered for 1week, and were re-tested. The results demonstrate there was no significant impact on auditory function utilizing the RWM surgical procedure with or without the canalostomy, and DPOAE thresholds were elevated reversibly during the salicylate infusion. Comparing the threshold shifts for both methods, the B+C approach had more of a physiological effect than the BA approach, including at lower frequencies representing more apical cochlear locations. Unlike mouse cochleostomies, there was no deleterious auditory functional impact after 1week recovery from surgery. The B+C approach had more drug efficacy at lower frequencies, underscoring potential benefits for more precise control of delivery of inner ear therapeutic compounds

  9. Round Window Membrane Intracochlear Drug Delivery Enhanced by Induced Advection

    PubMed Central

    Borkholder, David A.; Zhu, Xiaoxia; Frisina, Robert D.

    2014-01-01

    Delivery of therapeutic compounds to the inner ear via absorption through the round window membrane (RWM) has advantages over direct intracochlear infusions; specifically, minimizing impact upon functional hearing measures. However, previous reports show that significant basal-to-apical concentration gradients occur, with the potential to impact treatment efficacy. Here we present a new approach to inner ear drug delivery with induced advection aiding distribution of compounds throughout the inner ear in the murine cochlea. Polyimide microtubing was placed near the RWM niche through a bullaostomy into the middle ear cavity allowing directed delivery of compounds to the RWM. We hypothesized that a posterior semicircular canalostomy would induce apical flow from the patent cochlear aqueduct to the canalostomy due to influx of cerebral spinal fluid. To test this hypothesis, young adult CBA/CaJ mice were divided into two groups: bullaostomy approach only (BA) and bullaostomy + canalostomy (B+C). Cochlear function was evaluated by distortion product otoacoustic emission (DPOAE) and auditory brainstem response (ABR) thresholds during and after middle ear infusion of salicylate in artificial perilymph (AP), applied near the RWM. The mice recovered for 1 week, and were re-tested. The results demonstrate there was no significant impact on auditory function utilizing the RWM surgical procedure with or without the canalostomy, and DPOAE thresholds were elevated reversibly during the salicylate infusion. Comparing the threshold shifts for both methods, the B+C approach had more of a physiological effect than the BA approach, including at lower frequencies representing more apical cochlear locations. Unlike mouse cochleostomies, there was no deleterious auditory functional impact after 1 week recovery from surgery. The B+C approach had more drug efficacy at lower frequencies, underscoring potential benefits for more precise control of delivery of inner ear therapeutic compounds

  10. Evaporation of traffic-generated nanoparticles during advection from source

    NASA Astrophysics Data System (ADS)

    Harrison, Roy M.; Jones, Alan M.; Beddows, David C. S.; Dall'Osto, Manuel; Nikolova, Irina

    2016-01-01

    Earlier work has demonstrated the potential for volatilisation of nanoparticles emitted by road traffic as these are advected downwind from the source of emissions, but there have been few studies and the processes have yet to be elucidated in detail. Using a dataset collected at paired sampling sites located respectively in a street canyon and in a nearby park, an in depth analysis of particle number size distributions has been conducted in order to better understand the size reduction of the semi-volatile nanoparticles. By sorting the size distributions according to wind direction and fitting log normal modes, it can be seen that the mode peaking at around 22 nm at the street canyon site is on average shrinking to 6.2 nm diameter at the park site which indicates a mean shrinkage rate for these particles of 0.13 nm s-1 with temperatures within the range 12-18 °C. The diurnal variation of the shrunken mode in the park reflects the diurnal pattern of particle concentrations at the street canyon site taken as the main source area. An analysis of peak diameter for the smallest mode at the downwind park site shows an inverse relationship to wind speed suggesting that dilution rather than travel time is the main determinant of the particle shrinkage rate. An evaluation of previously collected C10 to C35 n-alkane data from a different urban location shows a good fit to Pankow partitioning theory reflecting the semi-volatility of compounds believed to be representative of the composition of diesel exhaust nanoparticles, hence confirming the feasibility of an evaporative mechanism for particle shrinkage.

  11. Critical time scales for advection-diffusion-reaction processes

    NASA Astrophysics Data System (ADS)

    Ellery, Adam J.; Simpson, Matthew J.; McCue, Scott W.; Baker, Ruth E.

    2012-04-01

    The concept of local accumulation time (LAT) was introduced by Berezhkovskii and co-workers to give a finite measure of the time required for the transient solution of a reaction-diffusion equation to approach the steady-state solution [A. M. Berezhkovskii, C. Sample, and S. Y. Shvartsman, Biophys. J.BIOJAU0006-349510.1016/j.bpj.2010.07.045 99, L59 (2010); A. M. Berezhkovskii, C. Sample, and S. Y. Shvartsman, Phys. Rev. EPLEEE81539-375510.1103/PhysRevE.83.051906 83, 051906 (2011)]. Such a measure is referred to as a critical time. Here, we show that LAT is, in fact, identical to the concept of mean action time (MAT) that was first introduced by McNabb [A. McNabb and G. C. Wake, IMA J. Appl. Math.IJAMDM0272-496010.1093/imamat/47.2.193 47, 193 (1991)]. Although McNabb's initial argument was motivated by considering the mean particle lifetime (MPLT) for a linear death process, he applied the ideas to study diffusion. We extend the work of these authors by deriving expressions for the MAT for a general one-dimensional linear advection-diffusion-reaction problem. Using a combination of continuum and discrete approaches, we show that MAT and MPLT are equivalent for certain uniform-to-uniform transitions; these results provide a practical interpretation for MAT by directly linking the stochastic microscopic processes to a meaningful macroscopic time scale. We find that for more general transitions, the equivalence between MAT and MPLT does not hold. Unlike other critical time definitions, we show that it is possible to evaluate the MAT without solving the underlying partial differential equation (pde). This makes MAT a simple and attractive quantity for practical situations. Finally, our work explores the accuracy of certain approximations derived using MAT, showing that useful approximations for nonlinear kinetic processes can be obtained, again without treating the governing pde directly.

  12. Verification of Advective Bar Elements Implemented in the Aria Thermal Response Code.

    SciTech Connect

    Mills, Brantley

    2016-01-01

    A verification effort was undertaken to evaluate the implementation of the new advective bar capability in the Aria thermal response code. Several approaches to the verification process were taken : a mesh refinement study to demonstrate solution convergence in the fluid and the solid, visually examining the mapping of the advective bar element nodes to the surrounding surfaces, and a comparison of solutions produced using the advective bars for simple geometries with solutions from commercial CFD software . The mesh refinement study has shown solution convergence for simple pipe flow in both temperature and velocity . Guidelines were provided to achieve appropriate meshes between the advective bar elements and the surrounding volume. Simulations of pipe flow using advective bars elements in Aria have been compared to simulations using the commercial CFD software ANSYS Fluent (r) and provided comparable solutions in temperature and velocity supporting proper implementation of the new capability. Verification of Advective Bar Elements iv Acknowledgements A special thanks goes to Dean Dobranich for his guidance and expertise through all stages of this effort . His advice and feedback was instrumental to its completion. Thanks also goes to Sam Subia and Tolu Okusanya for helping to plan many of the verification activities performed in this document. Thank you to Sam, Justin Lamb and Victor Brunini for their assistance in resolving issues encountered with running the advective bar element model. Finally, thanks goes to Dean, Sam, and Adam Hetzler for reviewing the document and providing very valuable comments.

  13. Central Arctic Ocean freshwater during a period of anomalous melt and advection in 2015

    NASA Astrophysics Data System (ADS)

    Rabe, Benjamin; Korhonen, Meri; Hoppmann, Mario; Ricker, Robert; Hendricks, Stefan; Krumpen, Thomas; Beckers, Justin; Schauer, Ursula

    2016-04-01

    During the recent decade the Arctic Ocean has shown several years of very low sea-ice extent and an increase in liquid freshwater. Yet, the processes underlying the interannual variability are still not fully understood. Hydrographic observations by ship campaigns and autonomous platforms reveal that summer 2015 showed above average liquid freshwater in the upper ocean of the central Arctic. Surface temperatures and sea level pressure were also higher than the average of the preceeding two decades. From hydrographic observations and atmospheric reanalysis data we show that this liquid freshwater anomaly is associated with above average sea-ice melt and intensified northward Ekman transport. We, further, found significant amounts of Pacific Water in the upper water column, from the mixed-layer to the upper halocline. Our results suggest that the freshening was due to both advection of low-salinity water from the direction of the Siberian shelves, the Beaufort Gyre and the Bering Strait, and enhance sea-ice melt.

  14. On the potential importance of transient air flow in advective radon entry into buildings

    SciTech Connect

    Narasimhan, T.N.; Tsang, Y.W.; Holman, H.Y. )

    1990-05-01

    The authors have investigated, using a mathematical model, the temporal variations of air flux within the soil mass surrounding a basement in the presence of time dependent periodic variations of barometric pressure and a persistent under-pressure at the basement. The results of transient air flow show that for a homogeneous soil medium, the effects of barometric fluctuations are most significant in the cases where soil permeability to air is low and the fluctuation frequency is high. In these cases, the barometric fluctuation can greatly enhance the magnitude of fluxes as well as introduce flow direction reversals from surrounding soil into the basement. These large fluxes with direction reversals have strong implications in regard to advective transport of radon. The results suggest that the transient oscillations have to be accounted for in quantifying radon entry into buildings. In the actual field set up, the transient behavior will be further influenced by soil permeability heterogeneity, by soil moisture variations, and by the effects of multiple periodic components in the barometric pressure fluctuations.

  15. The Granite Aqueduct and Advection of Water and Heat Through Plutonic Terranes

    NASA Astrophysics Data System (ADS)

    Glazner, A. F.; Bartley, J. M.; Law, B.; Coleman, D. S.

    2011-12-01

    invoke large-volume, long-lived areas of interconnected melt in an attempt to keep alive traditional ideas regarding processes such as magma flow, stoping, and crystal fractionation. However, thermal modeling consistently demonstrates that without continual input of new magma, such volumes cannot be maintained for times greater than a few hundred ka. Furthermore, advective heat loss via the granite aqueduct, coupled with fluid convection in wall rocks, will cool plutons far faster than conductive cooling alone. Models demonstrating long-lived interconnected melt without continued magma input require highly unrealistic and contrived assumptions, such as instantaneous emplacement of huge volumes of magma with no vertical heat transport (Memeti et al., 2010).

  16. Measurement of advection of CO2 over grasslands in complex terrain in the Alps

    NASA Astrophysics Data System (ADS)

    Zhao, Peng; Hammerle, Albin; Wohlfahrt, Georg

    2015-04-01

    The role of advection is often ignored in the estimation of net ecosystem exchange (NEE) of CO2 in ecosystems. However, some studies reported that more realistic estimates of night-time NEE could be gathered if horizontal and vertical advections are included. While most of previous advection experiments have been conducted in forest ecosystems, grassland ecosystems have a great advantage as measurements of advection can be realised with smaller infrastructure and thus less experimental effort. In a preliminary simplified study, advection showed an important contribution to NEE during night time at a sub-alpine grassland site. This three-year program is focused on the role of advection for NEE of grassland ecosystems in complex terrain in the Alps. We are going to carry out field campaigns at four sites which cover a range of terrain types typical for mountains with varying degrees of complexity, including a valley-bottom site, a steep-slope site, a mixed-terrain site, and an undulating-terrain site. Observations will take place in a notional control volume with a length varying from 50 m to 5 m at each site in order to quantify the effects of horizontal spatial scale on advection estimates. The observations at each site include vertical flux of CO2 measured by eddy-covariance technique, horizontal and vertical advections of CO2 calculated from the measurement of wind components and CO2 gradients, and NEE measured by chambers. Among all, the measurement of the horizontal advection of CO2 needs many efforts because of small-scale variability in sources/sinks of CO2. We are going to use tubes with multiple inlets, which allows sampling at multiple positions across the faces at three heights of the control volume. Thus, we would be able to quantify the contribution of advection to NEE at different grassland sites situated in complex terrain in the Alps, and to quantify the effect of spatial scale of advection measurements with a given experimental setup and accuracy on

  17. A time-accurate multiple-grid algorithm

    NASA Technical Reports Server (NTRS)

    Jespersen, D. C.

    1985-01-01

    A time-accurate multiple-grid algorithm is described. The algorithm allows one to take much larger time steps with an explicit time-marching scheme than would otherwise be the case. Sample calculations of a scalar advection equation and the Euler equations for an oscillating airfoil are shown. For the oscillating airfoil, time steps an order of magnitude larger than the single-grid algorithm are possible.

  18. Solution of the advection-dispersion equation by a finite-volume eulerian-lagrangian local adjoint method

    USGS Publications Warehouse

    Healy, R.W.; Russell, T.F.

    1992-01-01

    A finite-volume Eulerian-Lagrangian local adjoint method for solution of the advection-dispersion equation is developed and discussed. The method is mass conservative and can solve advection-dominated ground-water solute-transport problems accurately and efficiently. An integrated finite-difference approach is used in the method. A key component of the method is that the integral representing the mass-storage term is evaluated numerically at the current time level. Integration points, and the mass associated with these points, are then forward tracked up to the next time level. The number of integration points required to reach a specified level of accuracy is problem dependent and increases as the sharpness of the simulated solute front increases. Integration points are generally equally spaced within each grid cell. For problems involving variable coefficients it has been found to be advantageous to include additional integration points at strategic locations in each well. These locations are determined by backtracking. Forward tracking of boundary fluxes by the method alleviates problems that are encountered in the backtracking approaches of most characteristic methods. A test problem is used to illustrate that the new method offers substantial advantages over other numerical methods for a wide range of problems.

  19. Creation and tidal advection of a cold salinity front in Storfjorden: 2. Supercooling induced by turbulent mixing of cold water

    NASA Astrophysics Data System (ADS)

    McPhee, Miles G.; Skogseth, Ragnheid; Nilsen, Frank; Smedsrud, Lars H.

    2013-08-01

    Measurements near the edge of fast ice in Freemansundet, Svalbard, reveal mixing processes associated with tidal advection of a sharp front in salinity, including possible supercooling induced by double diffusion in a fully turbulent water column. The front translated back and forth with the semidiurnal tide between an area of mobile (drifting) ice in Storfjorden proper, and the narrow sound covered by fast ice. Water on each side of the front was near its salinity-determined freezing temperature. Instruments deployed about 400 m into the sound from the fast ice edge measured current, temperature, conductivity, and turbulence quantities through several tidal cycles. Turbulence data illustrate that as the steep horizontal salinity (density) gradient advected past the measurement site, vertical shear near the fast-ice base induced marked flood/ebb asymmetry in turbulent mixing. As fresher water entered the sound on the flood phase, inward transport of denser water near the upper boundary was retarded, leading to statically unstable conditions and enhanced turbulence. The opposite occurred during ebb tide, as denser water underran lighter. Transient episodes of supercooling accompanied frontal passage on both flood and ebb phases. The most likely explanation for a zone of supercooled water within the strongly mixed frontal region is that during mixing of fresher, slightly warmer (but still at freezing) water from outside with saltier, colder water in the sound, the former constituent lost heat faster than gaining salt. This interpretation (differing turbulent diffusivities for heat and salt) challenges strict application of Reynolds analogy for highly turbulent shear flow.

  20. Population densities and density-area relationships in a community with advective dispersal and variable mosaics of resource patches.

    PubMed

    Lancaster, Jill; Downes, Barbara J

    2014-12-01

    Many communities comprise species that select resources that are patchily distributed in an environment that is otherwise unsuitable or suboptimal. Effects of this patchiness can depend on the characteristics of patch arrays and animal movements, and produce non-intuitive outcomes in which population densities are unrelated to resource abundance. Resource mosaics are predicted to have only weak effects, however, where patches are ephemeral or organisms are transported advectively. The running waters of streams and benthic invertebrates epitomize such systems, but empirical tests of resource mosaics are scarce. We sampled 15 common macroinvertebrates inhabiting distinct detritus patches at four sites within a sand-bed stream, where detritus formed a major resource of food and living space. At each site, environmental variables were measured for 100 leaf packs; invertebrates were counted in 50 leaf packs. Sites differed in total abundance of detritus, leaf pack sizes and invertebrate densities. Multivariate analysis indicated that patch size was the dominant environmental variable, but invertebrate densities differed significantly between sites even after accounting for patch size. Leaf specialists showed positive and strong density-area relationships, except where the patch size range was small and patches were aggregated. In contrast, generalist species had weaker and variable responses to patch sizes. Population densities were not associated with total resource abundance, with the highest densities of leaf specialists in sites with the least detritus. Our results demonstrate that patchy resources can affect species even in communities where species are mobile, have advective dispersal, and patches are relatively ephemeral. PMID:25190216

  1. Nocturnal Respiration: Can we use the Temporal Dynamics of Advection to Derive an Alternative to the u*-Threshold Filtering Technique?

    NASA Astrophysics Data System (ADS)

    van Gorsel, E.; Leuning, R.; Delpierre, N.; Haverd, V.; Davy, R.; Cleugh, H.

    2007-12-01

    Even moderately complex topography can lead to significant horizontal and vertical advection and a consequent underestimation of nocturnal CO2 fluxes derived from eddy covariance measurements on a single tower. The presence of advective transport is identified using the time series of CO2 concentrations. Given a continuous input of carbon (soil-, wood- and leaf respiration) into a control volume (CV) we expect concentrations in that control volume to increase through time if there is no flux through the upper lid and no advective transport. Time series measurements usually show a strong increase in carbon concentration once the atmosphere is stably stratified, but after this initially strong increase the temporal build-up of concentrations is slower and may even remain relatively constant. As this steady-state situation is not associated with fluxes through the top of the CV we can assume that advection is draining CO2 away. We have analysed data from 24 Fluxnet sites where turbulent flux (Fc) and change of storage (Sc) of CO2 are routinely measured. Analysis of Sc confirms the observation by Aubinet et al. [1] that a common feature in canopy flows is that a maximum rate of change of CO2 occurs in the early evening. This suggests that after this maximum, the advection terms in the mass balance become non negligible. Based on this observation we have developed an alternative to the u*-threshold filtering technique [2]. We have shown that applying this alternative approach leads to good agreement between eddy covariance derived estimates of respiration and independent chamber measurements on a study site in a medium dense Eucalyptus forest in south-east Australia. In this contribution we discuss the applicability of this approach for several sites ranging from the tropics to subpolar latitudes and located in terrain that varies from almost ideally flat to very complex. We compare results from three different estimates of respiration and discuss differences between

  2. Particle transport in the human respiratory tract: formulation of a nodal inverse distance weighted Eulerian-Lagrangian transport and implementation of the Wind-Kessel algorithm for an oral delivery.

    PubMed

    Kannan, Ravishekar; Guo, Peng; Przekwas, Andrzej

    2016-06-01

    This paper is the first in a series wherein efficient computational methods are developed and implemented to accurately quantify the transport, deposition, and clearance of the microsized particles (range of interest: 2 to 10 µm) in the human respiratory tract. In particular, this paper (part I) deals with (i) development of a detailed 3D computational finite volume mesh comprising of the NOPL (nasal, oral, pharyngeal and larynx), trachea and several airway generations; (ii) use of CFD Research Corporation's finite volume Computational Biology (CoBi) flow solver to obtain the flow physics for an oral inhalation simulation; (iii) implement a novel and accurate nodal inverse distance weighted Eulerian-Lagrangian formulation to accurately obtain the deposition, and (iv) development of Wind-Kessel boundary condition algorithm. This new Wind-Kessel boundary condition algorithm allows the 'escaped' particles to reenter the airway through the outlets, thereby to an extent accounting for the drawbacks of having a finite number of lung generations in the computational mesh. The deposition rates in the NOPL, trachea, the first and second bifurcation were computed, and they were in reasonable accord with the Typical Path Length model. The quantitatively validated results indicate that these developments will be useful for (i) obtaining depositions in diseased lungs (because of asthma and COPD), for which there are no empirical models, and (ii) obtaining the secondary clearance (mucociliary clearance) of the deposited particles. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26317686

  3. Horizontal Advection and Mixing of Pollutants in the Urban Atmospheric Environment

    NASA Astrophysics Data System (ADS)

    Magnusson, S. P.; Entekhabi, D.; Britter, R.; Norford, L.; Fernando, H. J.

    2013-12-01

    Although urban air quality and its impacts on the public health have long been studied, the increasing urbanization is raising concerns on how to better control and mitigate these health impacts. A necessary element in predicting exposure levels is fundamental understanding of flow and dispersion in urban canyons. The complex topology of building structures and roads requires the resolution of turbulence phenomena within urban canyons. The use of dense and low porosity construction material can lead to rapid heating in response to direct solar exposure due to large thermal mass. Hence thermal and buoyancy effects may be as important as mechanically-forced or shear-induced flows. In this study, the transport of pollutants within the urban environment, as well as the thermal and advection effects, are investigated. The focus is on the horizontal transport or the advection effects within the urban environment. With increased urbanization and larger and more spread cities, concern about how the upstream air quality situation can affect downstream areas. The study also examines the release and the dispersion of hazardous material. Due to the variety and complexity of urban areas around the world, the urban environment is simplified into adjacent two-dimensional urban street canyons. Pollutants are released inside each canyon. Computational Fluid Dynamics (CFD) simulations are applied to evaluate and quantify the flow rate out of each canyon and also the exchange of pollutants between the canyons. Imagine a row of ten adjacent urban street canyons of aspect ratio 1 with horizontal flow perpendicular to it as shown in the attached figure. C is the concentration of pollutants. The first digit indicates in what canyon the pollutant is released and the second digit indicates the location of that pollutant. For example, C3,4 is the concentration of pollutant released inside canyon 3 measured in canyon 4. The same amount of pollution is released inside the ten street canyons

  4. Transport of nitrogen oxides through the winter mesopause in HAMMONIA

    NASA Astrophysics Data System (ADS)

    Meraner, Katharina; Schmidt, Hauke

    2016-03-01

    We analyze the importance of individual transport processes for the winter polar downward transport of nitrogen oxides (NOx) from the thermosphere to the mesosphere. The downward transport of NOx produced by energetic particle precipitation induces chemical alterations in the middle atmosphere and influences ozone chemistry. However, it remains unclear how much each transport process contributes to the downward transport. We use simulations of the atmospheric general circulation and chemistry model HAMMONIA (Hamburg Model of Neutral and Ionized Atmosphere) for the extended winter 2008/2009 with a passive tracer. The model enables us to separate the contributions of advection, eddy and molecular diffusion on the total transport by switching off processes. The results show that molecular diffusion and resolved vertical mixing due to advection effectively transport NOx to the mesosphere. While the impact of molecular diffusion on the transport rapidly decreases below 0.001 hPa, the impact of advection increases. Around the central date of the sudden stratospheric warming in January 2009, advection is strongly enhanced in the thermosphere and mesosphere and the downward transport through the mesopause region is almost entirely driven by advection. Eddy diffusion has limited impact on the transport in the upper mesosphere and negligible impact on the transport in the thermosphere. If eddy diffusion is enhanced as suggested by observations, it can potentially have a larger impact on transport through the mesopause than was previously assumed.

  5. Investigating redox processes under diffusive and advective flow conditions using a coupled omics and synchrotron approach

    NASA Astrophysics Data System (ADS)

    Kemner, K. M.; Boyanov, M.; Flynn, T. M.; O'Loughlin, E. J.; Antonopoulos, D. A.; Kelly, S.; Skinner, K.; Mishra, B.; Brooks, S. C.; Watson, D. B.; Wu, W. M.

    2015-12-01

    FeIII- and SO42--reducing microorganisms and the mineral phases they produce have profound implications for many processes in aquatic and terrestrial systems. In addition, many of these microbially-catalysed geochemical transformations are highly dependent upon introduction of reactants via advective and diffusive hydrological transport. We have characterized microbial communities from a set of static microcosms to test the effect of ethanol diffusion and sulfate concentration on UVI-contaminated sediment. The spatial distribution, valence states, and speciation of both U and Fe were monitored in situ throughout the experiment by synchrotron x-ray absorption spectroscopy, in parallel with solution measurements of pH and the concentrations of sulfate, ethanol, and organic acids. After reaction initiation, a ~1-cm thick layer of sediment near the sediment-water (S-W) interface became visibly dark. Fe XANES spectra of the layer were consistent with the formation of FeS. Over the 4 year duration of the experiment, U LIII-edge XANES indicated reduction of U, first in the dark layer and then throughout the sediment. Next, the microcosms were disassembled and samples were taken from the overlying water and different sediment regions. We extracted DNA and characterized the microbial community by sequencing 16S rRNA gene amplicons with the Illumina MiSeq platform and found that the community evolved from its originally homogeneous composition, becoming significantly spatially heterogeneous. We have also developed an x-ray accessible column to probe elemental transformations as they occur along the flow path in a porous medium with the purpose of refining reactive transport models (RTMs) that describe coupled physical and biogeochemical processes in environmental systems. The elemental distribution dynamics and the RTMs of the redox driven processes within them will be presented.

  6. A locally conservative non-negative finite element formulation for anisotropic advective-diffusive-reactive systems

    NASA Astrophysics Data System (ADS)

    Mudunuru, M. K.; Shabouei, M.; Nakshatrala, K.

    2015-12-01

    Advection-diffusion-reaction (ADR) equations appear in various areas of life sciences, hydrogeological systems, and contaminant transport. Obtaining stable and accurate numerical solutions can be challenging as the underlying equations are coupled, nonlinear, and non-self-adjoint. Currently, there is neither a robust computational framework available nor a reliable commercial package known that can handle various complex situations. Herein, the objective of this poster presentation is to present a novel locally conservative non-negative finite element formulation that preserves the underlying physical and mathematical properties of a general linear transient anisotropic ADR equation. In continuous setting, governing equations for ADR systems possess various important properties. In general, all these properties are not inherited during finite difference, finite volume, and finite element discretizations. The objective of this poster presentation is two fold: First, we analyze whether the existing numerical formulations (such as SUPG and GLS) and commercial packages provide physically meaningful values for the concentration of the chemical species for various realistic benchmark problems. Furthermore, we also quantify the errors incurred in satisfying the local and global species balance for two popular chemical kinetics schemes: CDIMA (chlorine dioxide-iodine-malonic acid) and BZ (Belousov--Zhabotinsky). Based on these numerical simulations, we show that SUPG and GLS produce unphysical values for concentration of chemical species due to the violation of the non-negative constraint, contain spurious node-to-node oscillations, and have large errors in local and global species balance. Second, we proposed a novel finite element formulation to overcome the above difficulties. The proposed locally conservative non-negative computational framework based on low-order least-squares finite elements is able to preserve these underlying physical and mathematical properties

  7. Black Hole Event Horizons and Advection-Dominated Accretion

    NASA Technical Reports Server (NTRS)

    McClintock, Jeffrey; Mushotzky, Richard F. (Technical Monitor)

    2001-01-01

    The XMM data on black-hole X-ray novae are only now becoming available and they have so far not been included in any publications. This work is part of a larger project that makes use of both XMM and Chandra data. Our first publication on the Chandra results is the following: "New Evidence for Black Hole Event Horizons from Chandra" by M.R. Garcia, J.E. McClintock, R. Narayan, P. Callanan, D. Barret and S. Murray (2001, ApJ, 553, L47). Therein we present the luminosities of the two black-hole X-ray novae, GRO J0422+22 and 4U1 543-47, which were observed by Chandra. These results are combined with the luminosities of four additional black-hole X-ray novae, which were observed as part of a Chandra GTO program (PI: S. Murray). The very low, but nonzero, quiescent X-ray luminosities of these black hole binaries is very difficult to understand in the context of standard viscous accretion disk theory. The principal result of this work is that X-ray novae that contain black hole primaries are about 100 times fainter that X-ray novae that contain neutron star primaries. This result had been suggested in earlier work, but the present work very firmly establishes this large luminosity difference. The result is remarkable because the black-hole and the neutron-star systems are believed to be similar in many respects. Most importantly, the mass transfer rate from the secondary star is believed to be very comparable for the two kinds of systems for similar orbital periods. The advection-dominated accretion flow (ADAF) model provides a natural framework for understanding the extraordinarily low luminosities of the black hole systems and the hundred-fold greater luminosities of the neutron star systems. The chief feature of an ADAF is that the heat energy in the accreting gas is trapped in the gas and travels with it, rather than being radiated promptly. Thus the accreting gas reaches the central object with a huge amount of thermal energy. If the accretor is a black hole, the

  8. Fast Coherent Particle Advection through Time-Varying Unstructured Flow Datasets.

    PubMed

    Chen, Mingcheng; Shadden, Shawn C; Hart, John C

    2016-08-01

    Tracing the paths of collections of particles through a flow field is a key step for many flow visualization and analysis methods. When a flow field is interpolated from the nodes of an unstructured mesh, the process of advecting a particle must first find which cell in the unstructured mesh contains the particle. Since the paths of nearby particles often diverge, the parallelization of particle advection quickly leads to incoherent memory accesses of the unstructured mesh. We have developed a new block advection GPU approach that reorganizes particles into spatially coherent bundles as they follow their advection paths, which greatly improves memory coherence and thus shared-memory GPU performance. This approach works best for flows that meet the CFL criterion on unstructured meshes of uniformly sized elements, small enough to fit at least two timesteps in GPU memory. PMID:26353375

  9. Finite element approximation of large air pollution problems. I. Advection. Technical report, January-March 1995

    SciTech Connect

    Giraldo, F.X.; Neta, B.

    1995-04-21

    An Eulerian and semi-Lagrangian finite element methods for the solution of the two dimensional advection equation were developed. Bilinear rectangular elements were used. Linear stability analysis of the method is given.

  10. Sensitivity of Gcm Inm Ras To The Change of Humidity Advection Scheme

    NASA Astrophysics Data System (ADS)

    Kostrykin, S. V.

    We study the influence of change the numerical scheme used for humidity advection in the GCM INM RAS on the model results. The previously used advection scheme of the second order ­ leap-frog was changed on the semi-lagrangian cip scheme of the third order. It has shown that the last scheme has excelent numerical properties among other common semi-lagrangian schemes dealing with precise advection of sharp gra- dients. The numerical expriments with GCM has shown that the main changes in the humidity and temperature fields has happend near tropopause. More closeness of the model fields obtained with new advection of humidity to the NCAR/NCEP reanalyses fields are shown.

  11. Comparison of thermal advection measurements by clear-air radar and radiosonde techniques

    SciTech Connect

    Crochet, M.; Rougier, G.; Bazile, G. Meteorologie Nationale, Trappes )

    1990-10-01

    Vertical profiles of the horizontal wind have been measured every 4 min by a clear-air radar (stratospheric-troposphere radar), and vertical profiles of temperature have been obtained every 2 hours by three radiosonde soundings in the same zone in Brittany during the Mesoscale Frontal Dynamics Project FRONTS 87 campaign. Radar thermal advection is deduced from the thermal wind equation using the measured real horizontal wind instead of the geostrophic wind. Radiosonde thermal advection is determined directly from the sounding station data sets of temperature gradients and also approximately from the thermodynamic equation by the temperature tendency. These approximations, applied during a frontal passage, show the same general features and magnitude of the thermal advection, giving a preliminary but encouraging conclusion for a possible real-time utilization of clear-air radars to monitor thermal advection and to identify its characteristic features. 6 refs.

  12. The impact of advection on stratification and chlorophyll variability in the equatorial Pacific

    NASA Astrophysics Data System (ADS)

    Dave, Apurva C.; Lozier, M. Susan

    2015-06-01

    Previously reported global-scale correlations between interannual variability in upper ocean stratification and chlorophyll a (a proxy for phytoplankton biomass) have been shown to be driven by strong associations between the two properties in the central and western equatorial Pacific. Herein, we present evidence that these correlations are not causal but instead result from the advection of heat, salt, and nutrients in the region. Specifically, we demonstrate that stratification and chlorophyll are simultaneously influenced by shifts in the horizontal advective inputs of cold/saline/nutrient-rich waters from upwelling regions to the east and warm/fresh/nutrient-poor waters to the west. We find that horizontal advection contributes substantially to the annual surface layer nutrient budget and, together with vertical advection, significantly impacts interannual variability in chlorophyll. These results highlight the importance of a three-dimensional framework for examining nutrient supply in the upper ocean—a crucial requirement for assessing future marine ecosystem responses to a changing climate.

  13. A fully implicit method for 3D quasi-steady state magnetic advection-diffusion.

    SciTech Connect

    Siefert, Christopher; Robinson, Allen Conrad

    2009-09-01

    We describe the implementation of a prototype fully implicit method for solving three-dimensional quasi-steady state magnetic advection-diffusion problems. This method allows us to solve the magnetic advection diffusion equations in an Eulerian frame with a fixed, user-prescribed velocity field. We have verified the correctness of method and implementation on two standard verification problems, the Solberg-White magnetic shear problem and the Perry-Jones-White rotating cylinder problem.

  14. Advection-Induced Spectrotemporal Defects in a Free-Electron Laser

    SciTech Connect

    Bielawski, S.; Szwaj, C.; Bruni, C.; Garzella, D.; Orlandi, G.L.; Couprie, M.E.

    2005-07-15

    We evidence numerically and experimentally that advection can induce spectrotemporal defects in a system presenting a localized structure. Those defects in the spectrum are associated with the breakings induced by the drift of the localized solution. The results are based on simulations and experiments performed on the super-ACO free-electron laser. However, we show that this instability can be generalized using a real Ginzburg-Landau equation with (i) advection and (ii) a finite-size supercritical region.

  15. A finite-volume Eulerian-Lagrangian localized adjoint method for solution of the advection-dispersion equation

    USGS Publications Warehouse

    Healy, R.W.; Russell, T.F.

    1993-01-01

    Test results demonstrate that the finite-volume Eulerian-Lagrangian localized adjoint method (FVELLAM) outperforms standard finite-difference methods for solute transport problems that are dominated by advection. FVELLAM systematically conserves mass globally with all types of boundary conditions. Integrated finite differences, instead of finite elements, are used to approximate the governing equation. This approach, in conjunction with a forward tracking scheme, greatly facilitates mass conservation. The mass storage integral is numerically evaluated at the current time level, and quadrature points are then tracked forward in time to the next level. Forward tracking permits straightforward treatment of inflow boundaries, thus avoiding the inherent problem in backtracking of characteristic lines intersecting inflow boundaries. FVELLAM extends previous results by obtaining mass conservation locally on Lagrangian space-time elements. -from Authors

  16. Impact of thin aquitards on two-dimensional solute transport in an aquifer

    NASA Astrophysics Data System (ADS)

    Rezaei, Abolfazl; Zhan, Hongbin; Zare, Mohammad

    2013-09-01

    The influence of aquitards on solute transport in an aquifer is an important and often overlooked process for subsurface contaminant transport. In particular, slow advection (leakage) into an aquitard is often neglected in previous analytical treatment of solute transport, making such analytical solutions unsuitable for benchmarking numerical simulations of transport when aquitard leakage exists. In this study, a semi-analytical solution to the two-dimensional conservative solute transport in an aquifer bounded by thin aquitards is derived in the Laplace domain. The governing equation in the aquifer (not aquitard) incorporates terms accounting for advection, longitudinal dispersion, and transverse vertical dispersion. Both one-dimensional vertical advection and molecular diffusion are considered for aquitard transport. The solutions are derived under conditions of steady-state flow and the first- and third-type transport boundary conditions in the aquifer along with assuming the continuity of concentration and vertical mass flux at aquifer and aquitard interfaces. The solutions in the real time domain are obtained by numerically inverting the solutions in the Laplace domain using the Stehfest (1970) algorithm. The semi-analytical solutions are compared with those from Zhan et al. (2009b), which considered aquitard leakage in infinitively thick aquitards. The concentration profiles, breakthrough curves and distribution profiles in the aquifer are different from those of Zhan et al. (2009b) at small ratios of the aquitard/aquifer thickness; whereas, the results of both are consistent for thick bounding aquitards. This study reveals that the residence time distribution (RTD) in the main aquifer is related to the aquitard/aquifer thickness ratios, Peclet numbers and porosities of adjacent aquitards. The results also suggest that MT3DMS (a commonly applied transport code) cannot successfully simulate solute transport at the aquifer-aquitard interfaces. The presented

  17. Impact of thin aquitards on two-dimensional solute transport in an aquifer.

    PubMed

    Rezaei, Abolfazl; Zhan, Hongbin; Zare, Mohammad

    2013-09-01

    The influence of aquitards on solute transport in an aquifer is an important and often overlooked process for subsurface contaminant transport. In particular, slow advection (leakage) into an aquitard is often neglected in previous analytical treatment of solute transport, making such analytical solutions unsuitable for benchmarking numerical simulations of transport when aquitard leakage exists. In this study, a semi-analytical solution to the two-dimensional conservative solute transport in an aquifer bounded by thin aquitards is derived in the Laplace domain. The governing equation in the aquifer (not aquitard) incorporates terms accounting for advection, longitudinal dispersion, and transverse vertical dispersion. Both one-dimensional vertical advection and molecular diffusion are considered for aquitard transport. The solutions are derived under conditions of steady-state flow and the first- and third-type transport boundary conditions in the aquifer along with assuming the continuity of concentration and vertical mass flux at aquifer and aquitard interfaces. The solutions in the real time domain are obtained by numerically inverting the solutions in the Laplace domain using the Stehfest (1970) algorithm. The semi-analytical solutions are compared with those from Zhan et al. (2009b), which considered aquitard leakage in infinitively thick aquitards. The concentration profiles, breakthrough curves and distribution profiles in the aquifer are different from those of Zhan et al. (2009b) at small ratios of the aquitard/aquifer thickness; whereas, the results of both are consistent for thick bounding aquitards. This study reveals that the residence time distribution (RTD) in the main aquifer is related to the aquitard/aquifer thickness ratios, Peclet numbers and porosities of adjacent aquitards. The results also suggest that MT3DMS (a commonly applied transport code) cannot successfully simulate solute transport at the aquifer-aquitard interfaces. The presented

  18. Numerical Modeling of Coupled Variably-Saturated Fluid Flow and Reactive Transport with Fast and Slow Chemical Reactions

    SciTech Connect

    LI, MING-HSU; SIEGEL, MALCOLM D.; YEH, GOUR-TSYH

    1999-09-20

    The couplings among chemical reaction rates, advective and diffusive transport in fractured media or soils, and changes in hydraulic properties due to precipitation and dissolution within fractures and in rock matrix are important for both nuclear waste disposal and remediation of contaminated sites. This paper describes the development and application of LEHGC2.0, a mechanistically-based numerical model for simulation of coupled fluid flow and reactive chemical transport including both fast and slow reactions invariably saturated media. Theoretical bases and numerical implementations are summarized, and two example problems are demonstrated. The first example deals with the effect of precipitation-dissolution on fluid flow and matrix diffusion in a two-dimensional fractured media. Because of the precipitation and decreased diffusion of solute from the fracture into the matrix, retardation in the fractured medium is not as large as the case wherein interactions between chemical reactions and transport are not considered. The second example focuses on a complicated but realistic advective-dispersive-reactive transport problem. This example exemplifies the need for innovative numerical algorithms to solve problems involving stiff geochemical reactions.

  19. Stochastic Analysis of Advection-diffusion-Reactive Systems with Applications to Reactive Transport in Porous Media

    SciTech Connect

    Tartakovsky, Daniel

    2013-08-30

    We developed new CDF and PDF methods for solving non-linear stochastic hyperbolic equations that does not rely on linearization approximations and allows for rigorous formulation of the boundary conditions.

  20. Melt production by viscous dissipation: Role of heat advection by Magma transport

    SciTech Connect

    Feigenson, M.D.; Spera, F.J.

    1980-02-01

    An energy conservation equation is formulated that balances the heat generated by viscous dissipation in a peridotite simultaneously undergoing partial fusion and penetrative constant shear stress deformation with the heat removed by mobilization and ascent of basaltic magma from the region undergoing deformation. The solution of this parameterized energy equation gives the volume fraction of melt (theta) as a function of time (t) after the initiation of deformation. A stability analysis of the conservation equation shows that stable (theta<100%) or unstable (theta..-->..infinity) solutions exist depending on the magnitude of two dimensionless parameters K/sub 1//K/sub 2/ and K/sub 3/. For geologically reasonable values of K/sub 2//K/sub 2/ and K/sub 3/, the analysis indicates that peridotitic thermo-mechanical systems undergoing penetrative deformation at constant shear stress show a two-stage history. An early stage of growth where theta increases monotonically on a 2 to 3 m.y. time scale eventually is replaced by a steady s ate regime (constant theta). Typical values of theta lie in the range 3 to 5 volume percent; melting of peridotite to the extent of 20--30% appears to be precluded by this model.

  1. Moisture Advection and Fresh Water Flux over Oceans

    NASA Technical Reports Server (NTRS)

    Tang, Wenqing; Liu, W. Timothy

    2002-01-01

    Moisture transport in the atmosphere is one of the most significant components in the hydrological cycle. Under stationary condition, ocean surface fresh water flux, which is the difference between precipitation (P) and evaporation (E), is balanced by the divergence of column-integrated moisture transport (IMT) in the atmosphere. Characterizing accurately a global picture of IMT from observation is a difficult task. It requires measurements of vertical profiles for wind vector and humidity. More specifically, IMT can be defined as the integration in pressure coordinates the product of specific humidity q and wind vector u, where g is the gravitational acceleration, and p, is the atmospheric pressure at ocean surface.In this study, a statistical relationship is derived between u, and u(sub)s using data from numerical weather prediction model. The relationship is then validated using surface and vertical profile from radiosonde data, before applied to spacebased measurements.

  2. Advection of Microphysical Scalars in Terminal Area Simulation System (TASS)

    NASA Technical Reports Server (NTRS)

    Ahmad, Nashat N.; Proctor, Fred H.

    2011-01-01

    The Terminal Area Simulation System (TASS) is a large eddy scale atmospheric flow model with extensive turbulence and microphysics packages. It has been applied successfully in the past to a diverse set of problems ranging from prediction of severe convective events (Proctor et al. 2002), tracking storms and for simulating weapons effects such as the dispersion and fallout of fission debris (Bacon and Sarma 1991), etc. More recently, TASS has been used for predicting the transport and decay of wake vortices behind aircraft (Proctor 2009). An essential part of the TASS model is its comprehensive microphysics package, which relies on the accurate computation of microphysical scalar transport. This paper describes an evaluation of the Leonard scheme implemented in the TASS model for transporting microphysical scalars. The scheme is validated against benchmark cases with exact solutions and compared with two other schemes - a Monotone Upstream-centered Scheme for Conservation Laws (MUSCL)-type scheme after van Leer and LeVeque's high-resolution wave propagation method. Finally, a comparison between the schemes is made against an incident of severe tornadic super-cell convection near Del City, Oklahoma.

  3. Chemistry and transport in a multi-dimensional model

    NASA Technical Reports Server (NTRS)

    Yung, Yuk L.

    1993-01-01

    The focus of our research program is the achievement of a quantitative understanding of the spatial distribution and temporal variation of chemical species in the terrestrial middle atmosphere, with emphasis on ozone. Although not directed at assessments of anthropogenic impacts, our activities contribute to a refinement of model descriptions of chemical and dynamical processes that are needed for assessment tasks. A unique feature of our research effort is a close interaction with the chemical kinetics group at JPL and the field measurement groups at JPL. The principal tools used in our investigations are l-D and 2-D photochemical models. The advective component of the meridional transport in these models is approximated by the diabatic circulation, which is derived diagnostically from the net radiative heating rates. We are developing accurate radiative transfer algorithms to find the net heating rates and the diabatic circulation for use in the 2-D model.

  4. Clumpy Accretion onto Black Holes. I. Clumpy-advection-dominated Accretion Flow Structure and Radiation

    NASA Astrophysics Data System (ADS)

    Wang, Jian-Min; Cheng, Cheng; Li, Yan-Rong

    2012-04-01

    We investigate the dynamics of clumps embedded in and confined by the advection-dominated accretion flows (ADAFs), in which collisions among the clumps are neglected. We start from the collisionless Boltzmann equation and assume that interaction between the clumps and the ADAF is responsible for transporting the angular momentum of clumps outward. The inner edge of the clumpy-ADAF is set to be the tidal radius of the clumps. We consider strong- and weak-coupling cases, in which the averaged properties of clumps follow the ADAF dynamics and are mainly determined by the black hole potential, respectively. We propose the analytical solution of the dynamics of clumps for the two cases. The velocity dispersion of clumps is one magnitude higher than the ADAF for the strong-coupling case. For the weak-coupling case, we find that the mean radial velocity of clumps is linearly proportional to the coefficient of the drag force. We show that the tidally disrupted clumps would lead to an accumulation of the debris to form a debris disk in the Shakura-Sunyaev regime. The entire hot ADAF will be efficiently cooled down by photons from the debris disk, giving rise to a collapse of the ADAF, and quench the clumpy accretion. Subsequently, evaporation of the collapsed ADAF drives resuscitate of a new clumpy-ADAF, resulting in an oscillation of the global clumpy-ADAF. Applications of the present model are briefly discussed to X-ray binaries, low ionization nuclear emission regions, and BL Lac objects.

  5. CLUMPY ACCRETION ONTO BLACK HOLES. I. CLUMPY-ADVECTION-DOMINATED ACCRETION FLOW STRUCTURE AND RADIATION

    SciTech Connect

    Wang Jianmin; Cheng Cheng; Li Yanrong

    2012-04-01

    We investigate the dynamics of clumps embedded in and confined by the advection-dominated accretion flows (ADAFs), in which collisions among the clumps are neglected. We start from the collisionless Boltzmann equation and assume that interaction between the clumps and the ADAF is responsible for transporting the angular momentum of clumps outward. The inner edge of the clumpy-ADAF is set to be the tidal radius of the clumps. We consider strong- and weak-coupling cases, in which the averaged properties of clumps follow the ADAF dynamics and are mainly determined by the black hole potential, respectively. We propose the analytical solution of the dynamics of clumps for the two cases. The velocity dispersion of clumps is one magnitude higher than the ADAF for the strong-coupling case. For the weak-coupling case, we find that the mean radial velocity of clumps is linearly proportional to the coefficient of the drag force. We show that the tidally disrupted clumps would lead to an accumulation of the debris to form a debris disk in the Shakura-Sunyaev regime. The entire hot ADAF will be efficiently cooled down by photons from the debris disk, giving rise to a collapse of the ADAF, and quench the clumpy accretion. Subsequently, evaporation of the collapsed ADAF drives resuscitate of a new clumpy-ADAF, resulting in an oscillation of the global clumpy-ADAF. Applications of the present model are briefly discussed to X-ray binaries, low ionization nuclear emission regions, and BL Lac objects.

  6. Advection and Diffusion of Substances in Biological Tissues With Complex Vascular Networks

    PubMed Central

    Beard, Daniel A.; Bassingthwaighte, James B.

    2010-01-01

    For highly diffusive solutes the kinetics of blood–tissue exchange is only poorly represented by a model consisting of sets of independent parallel capillary–tissue units. We constructed a more realistic multicapillary network model conforming statistically to morphometric data. Flows through the tortuous paths in the network were calculated based on constant resistance per unit length throughout the network and the resulting advective intracapillary velocity field was used as a framework for describing the extravascular diffusion of a substance for which there is no barrier or permeability limitation. Simulated impulse responses from the system, analogous to tracer water outflow dilution curves, showed flow-limited behavior over a range of flows from about 2 to 5 ml min−1 g−1, as is observed for water in the heart in vivo. The present model serves as a reference standard against which to evaluate computationally simpler, less physically realistic models. The simulated outflow curves from the network model, like experimental water curves, were matched to outflow curves from the commonly used axially distributed models only by setting the capillary wall permeability–surface area (PS) to a value so artifactually low that it is incompatible with the experimental observations that transport is flow limited. However, simple axially distributed models with appropriately high PSs will fit water outflow dilution curves if axial diffusion coefficients are set at high enough values to account for enhanced dispersion due to the complex geometry of the capillary network. Without incorporating this enhanced dispersion, when applied to experimental curves over a range of flows, the simpler models give a false inference that there is recruitment of capillary surface area with increasing flow. Thus distributed models must account for diffusional as well as permeation processes to provide physiologically appropriate parameter estimates. PMID:10784090

  7. Modelling of Thermal Advective Reactive Flow in Hydrothermal Mineral Systems Using an Implicit Time-stepped Finite Element Method.

    NASA Astrophysics Data System (ADS)

    Hornby, P. G.

    2005-12-01

    Understanding chemical and thermal processes taking place in hydrothermal mineral deposition systems could well be a key to unlocking new mineral reserves through improved targeting of exploration efforts. To aid in this understanding it is very helpful to be able to model such processes with sufficient fidelity to test process hypotheses. To gain understanding, it is often sufficient to obtain semi-quantitative results that model the broad aspects of the complex set of thermal and chemical effects taking place in hydrothermal systems. For example, it is often sufficient to gain an understanding of where thermal, geometric and chemical factors converge to precipitate gold (say) without being perfectly precise about how much gold is precipitated. The traditional approach is to use incompressible Darcy flow together with the Boussinesq approximation. From the flow field, the heat equation is used to advect-conduct the heat. The flow field is also used to transport solutes by solving an advection-dispersion-diffusion equation. The reactions in the fluid and between fluid and rock act as source terms for these advection-dispersion equations. Many existing modelling systems that are used for simulating such systems use explicit time marching schemes and finite differences. The disadvantage of this approach is the need to work on rectilinear grids and the number of time steps required by the Courant condition in the solute transport step. The second factor can be particularly significant if the chemical system is complex, requiring (at a minimum) an equilibrium calculation at each grid point at each time step. In the approach we describe, we use finite elements rather than finite differences, and the pressure, heat and advection-dispersion equations are solved implicitly. The general idea is to put unconditional numerical stability of the time integration first, and let accuracy assume a secondary role. It is in this sense that the method is semi-quantiative. However

  8. Eigensolution analysis of spectral/hp continuous Galerkin approximations to advection-diffusion problems: Insights into spectral vanishing viscosity

    NASA Astrophysics Data System (ADS)

    Moura, R. C.; Sherwin, S. J.; Peiró, J.

    2016-02-01

    This study addresses linear dispersion-diffusion analysis for the spectral/hp continuous Galerkin (CG) formulation in one dimension. First, numerical dispersion and diffusion curves are obtained for the advection-diffusion problem and the role of multiple eigencurves peculiar to spectral/hp methods is discussed. From the eigencurves' behaviour, we observe that CG might feature potentially undesirable non-smooth dispersion/diffusion characteristics for under-resolved simulations of problems strongly dominated by either convection or diffusion. Subsequently, the linear advection equation augmented with spectral vanishing viscosity (SVV) is analysed. Dispersion and diffusion characteristics of CG with SVV-based stabilization are verified to display similar non-smooth features in flow regions where convection is much stronger than dissipation or vice-versa, owing to a dependency of the standard SVV operator on a local Péclet number. First a modification is proposed to the traditional SVV scaling that enforces a globally constant Péclet number so as to avoid the previous issues. In addition, a new SVV kernel function is suggested and shown to provide a more regular behaviour for the eigencurves along with a consistent increase in resolution power for higher-order discretizations, as measured by the extent of the wavenumber range where numerical errors are negligible. The dissipation characteristics of CG with the SVV modifications suggested are then verified to be broadly equivalent to those obtained through upwinding in the discontinuous Galerkin (DG) scheme. Nevertheless, for the kernel function proposed, the full upwind DG scheme is found to have a slightly higher resolution power for the same dissipation levels. These results show that improved CG-SVV characteristics can be pursued via different kernel functions with the aid of optimization algorithms.

  9. Tracer transport improvements and it impact on Numerical Weather Prediction

    NASA Astrophysics Data System (ADS)

    Flemming, Johannes; Diamantakis, Michail; Augusti-Panareda, Anna

    2014-05-01

    The integrated forecasting system (IFS) of ECMWF has been extended in recent years for the simulation and assimilation of atmospheric trace gases and aerosols. The IFS uses a Semi-Lagrangian Advection (SLA) scheme, which does not formally conserve mass. The non-conservation was small enough to be tolerated for NWP applications in the past but it required a mass budget correction for the simulation of atmospheric composition. Therefore various mass fixer algorithms (MFA) have been implemented in the IFS to ensure tracer mass conservation within the advection scheme. These MFA have now also been applied to humidity and cloud fields. We will show the performance of the MFA in idealises cases, NWP 10-day forecast and longer model runs. We will discuss the impact of mass-fixed humidity fields on the simulated temperature fields. The atmospheric composition tracers can also be used to diagnose other properties of the SLA scheme such as shape preservation as well as properties of the transport by vertical diffusion and convection. We will show examples how tracers simulation and observation were used in this context.

  10. Advection and resulting CO2 exchange uncertainty in a tall forest in central Germany.

    PubMed

    Kutsch, Werner L; Kolle, Olaf; Rebmann, Corinna; Knohl, Alexander; Ziegler, Waldemar; Schulze, Ernst-Detlef

    2008-09-01

    Potential losses by advection were estimated at Hainich Forest, Thuringia, Germany, where the tower is located at a gentle slope. Three approaches were used: (1) comparing nighttime eddy covariance fluxes to an independent value of total ecosystem respiration by bottom-up modeling of the underlying processes, (2) direct measurements of a horizontal CO2 gradient and horizontal wind speed at 2 m height in order to calculate horizontal advection, and (3) direct measurements of a vertical CO2 gradient and a three-dimensional wind profile in order to calculate vertical advection. In the first approach, nighttime eddy covariance measurements were compared to independent values of total ecosystem respiration by means of bottom-up modeling of the underlying biological processes. Turbulent fluxes and storage term were normalized to the fluxes calculated by the bottom-up model. Below a u(*) threshold of 0.6 m/s the normalized turbulent fluxes decreased with decreasing u(*), but the flux to the storage increased only up to values less than 20% of the modeled flux at low turbulence. Horizontal advection was measured by a horizontal CO2 gradient over a distance of 130 m combined with horizontal wind speed measurements. Horizontal advection occurred at most of the evenings independently of friction velocity above the canopy. Nevertheless, horizontal advection was higher when u(*) was low. The peaks of horizontal advection correlated with changes in temperature. A full mass balance including turbulent fluxes, storage, and horizontal and vertical advection resulted in an increase of spikes and scatter but seemed to generally improve the results from the flux measurements. The comparison of flux data with independent bottom-up modeling results as well as the direct measurements resulted in strong indications that katabatic flows along the hill slope during evening and night reduces the measured apparent ecosystem respiration rate. In addition, anabatic flows may occur during the

  11. Modeling of Convective-Stratiform Precipitation Processes: Sensitivity to Partitioning Methods and Numerical Advection Schemes

    NASA Technical Reports Server (NTRS)

    Lang, Steve; Tao, W.-K.; Simpson, J.; Ferrier, B.; Einaudi, Franco (Technical Monitor)

    2001-01-01

    Six different convective-stratiform separation techniques, including a new technique that utilizes the ratio of vertical and terminal velocities, are compared and evaluated using two-dimensional numerical simulations of a tropical [Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment (TOGA COARE)] and midlatitude continental [Preliminary Regional Experiment for STORM-Central (PRESTORM)] squall line. The simulations are made using two different numerical advection schemes: 4th order and positive definite advection. Comparisons are made in terms of rainfall, cloud coverage, mass fluxes, apparent heating and moistening, mean hydrometeor profiles, CFADs (Contoured Frequency with Altitude Diagrams), microphysics, and latent heating retrieval. Overall, it was found that the different separation techniques produced results that qualitatively agreed. However, the quantitative differences were significant. Observational comparisons were unable to conclusively evaluate the performance of the techniques. Latent heating retrieval was shown to be sensitive to the use of separation technique mainly due to the stratiform region for methods that found very little stratiform rain. The midlatitude PRESTORM simulation was found to be nearly invariant with respect to advection type for most quantities while for TOGA COARE fourth order advection produced numerous shallow convective cores and positive definite advection fewer cells that were both broader and deeper penetrating above the freezing level.

  12. A Novel Electrical Model for Advection-Diffusion-Based Molecular Communication in Nanonetworks.

    PubMed

    Azadi, Mehdi; Abouei, Jamshid

    2016-04-01

    In this paper, we propose an end-to-end electrical model to characterize the communication between two nanomachines via advection-diffusion motion along the conventional pipe medium. For this modeling, we consider three modules consisting of transmitter, advection-diffusion propagation and receiver. The modulation scheme and releasing molecules through the conventional pipe medium from the transmitter nanomachine is represented in the transmitter module. The advection-diffusion propagation of molecules along the flow-induced path is shown in advection-diffusion propagation module, and the demodulation scheme of bounded particles at the receiver nanomachine is characterized in the receiver module. Our objective is to find an electrical model of each module under the zero initial condition which enables us to represent the electrical circuit related to each module. The transmitter and the signal propagation models are built on the basis of the molecular advection-diffusion physics, whereas the receiver model is interpreted by stemming from the theory of the ligand-receptor binding chemical process. In addition, we employ the transfer function of modules to derive the normalized gain and the delay of each module. Supported by numerical results, we analyze the effect of physical parameters of the pipe medium on the total normalized gain and delay of molecular communications. PMID:27046879

  13. Estimation of the advection effects induced by surface heterogeneities in the surface energy budget

    NASA Astrophysics Data System (ADS)

    Cuxart, Joan; Wrenger, Burkhard; Martínez-Villagrasa, Daniel; Reuder, Joachim; Jonassen, Marius O.; Jiménez, Maria A.; Lothon, Marie; Lohou, Fabienne; Hartogensis, Oscar; Dünnermann, Jens; Conangla, Laura; Garai, Anirban

    2016-07-01

    The effect of terrain heterogeneities in one-point measurements is a continuous subject of discussion. Here we focus on the order of magnitude of the advection term in the equation of the evolution of temperature as generated by documented terrain heterogeneities and we estimate its importance as a term in the surface energy budget (SEB), for which the turbulent fluxes are computed using the eddy-correlation method. The heterogeneities are estimated from satellite and model fields for scales near 1 km or broader, while the smaller scales are estimated through direct measurements with remotely piloted aircraft and thermal cameras and also by high-resolution modelling. The variability of the surface temperature fields is not found to decrease clearly with increasing resolution, and consequently the advection term becomes more important as the scales become finer. The advection term provides non-significant values to the SEB at scales larger than a few kilometres. In contrast, surface heterogeneities at the metre scale yield large values of the advection, which are probably only significant in the first centimetres above the ground. The motions that seem to contribute significantly to the advection term in the SEB equation in our case are roughly those around the hectometre scales.

  14. Ground-water solute transport with hydrogeochemical reactions

    SciTech Connect

    Garcia-Delgado, R.A.; Koussis, A.D.

    1997-03-01

    Chemical contamination of ground water is typically associated with multicomponent solutions of reactive substances, the mobility of which is affected by their reactivity. In predicting geochemical transport, it is therefore important that the liquid and solid phase reactions be modeled, along with the flow-controlled processes. This demanding task is typically carried out on powerful computers. Frequently, however, field data are available for a limited number of species, or, a small number of species suffices to characterize ground-water quality. In such cases it is desirable to be able to model the transport on a widely available class of inexpensive computers. The authors report on the development of a 2-D model for the transport of reactive species that runs efficiently on PCs. The model follows a modified one-step procedure that adopts total (aqueous and adsorbed) concentrations and aqueous concentrations of components, and accounts for aqueous complexation and for competitive sorption via isotherms or selectivity coefficients. The use of principal directions of transport coordinates, dimensional splitting, and a specialized algorithm for handling advection-dominated transport render it compact and efficient. Mass conservation is satisfied with high accuracy.

  15. Burning invariant manifolds in spatially disordered advection-reaction-diffusion

    NASA Astrophysics Data System (ADS)

    Bargteil, Dylan; Solomon, Tom; Mahoney, John; Mitchell, Kevin

    2012-02-01

    We introduce burning invariant manifolds (BIMs) which act as barriers to front propagation, similar to the role played by invariant manifolds as barriers to passive transport in two-dimensional flows. We present experimental studies of BIMs in a spatially disordered, time-independent flow. We generate the flow with a magnetohydrodynamic technique that uses a DC current and a disordered pattern of permanent magnets. The velocity field is determined from this flow using particle tracking velocimetry, and reaction fronts are produced using the Ferroin-catalyzed Belousov-Zhabotinsky (BZ) chemical reaction. We use the experimental velocity field and a three-dimensional set of ODEs to predict from theory the location and orientation of BIMs. These predicted BIMs are found to match up well with the propagation barriers observed experimentally in the same flow using the BZ reaction. We explore the nature of BIMs as one-sided barriers, in contrast to invariant manifolds that act as barriers for passive transport in all directions. We also explore the role of projection singularities in the theory and how these singularities affect front behavior.

  16. NONUNIFORM AND UNSTEADY SOLUTE TRANSPORT IN FURROW IRRRIGATION: I. MODEL DEVELOPMENT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A model for solving a cross-section-averaged Advection-Dispersion Equation (ADE) was developed to simulate the transport of fertilizer in furrow irrigation. The advection and dispersion processes were solved separately at each time step by implementing a method of characteristics with cubic spline i...

  17. Improvements in Satellite-Derived Short-Term Insolation Forecasting: Statistical Comparisons, Challenges for Advection-Based Forecasts, and New Techniques

    NASA Astrophysics Data System (ADS)

    Rogers, M. A.; Miller, S. D.; Haynes, J. M.; Heidinger, A. K.; Haupt, S. E.; Sengupta, M.

    2014-12-01

    Using satellite observations from GOES-E and GOES-W platforms in concert with GFS-derived cloud-level winds and a standalone radiative transfer model, an advection-derived forecast for surface GHI over the continental United States is described. In particular, comparisons from the satellite-derived forecast are shown against several SURFRAD sites, with particular attention to developing meaningful error metrics to better demonstrate forecast skill and identify sources of error. Challenges in advection-based forecast techniques, such as forecasting near regions of non-wind-driven cloud systems such as coastal marine stratocumulus, are described, as are methods integrated into the forecast algorithm to identify and address these challenges. Improvements in the particular algorithm with respect to comparison against surface observations, integration of the forecast technique into blended forecast products such as those described by the 'Public-Private-Academic Partnership to Advance Solar Power Forecasting' project spearheaded by the National Center for Atmospheric Research, and other observations germane to satellite-derived solar forecasting are covered using nearly two years of operational forecasts as background.

  18. Implicit solution of Stokes flow equation with material transport: toward thermal convection simulation under the self-gravitating field with free surface

    NASA Astrophysics Data System (ADS)

    Furuichi, M.; Nakagawa, T.; May, D.

    2013-12-01

    Stabilizing a numerical oscillation in free surface treatment is chagrining topic for a geodynamics simulation [e.g. Kaus et al. 2010, Duretz et al., 2011]. It is especially important for the Stokes flow simulation under the self-gravitating field based on 'Spherical Cartesian' method [Gerya et al., 2007], which is useful for simulating a long time scale dynamics of sinking metal rich materials to construct planetary core. The conventional explicit time stepping algorithm, which solves Stokes flow equation for a given material distribution at a previous time step, however has a difficulty for simulating dynamics such as a thermal convection, after the construction of layered structure in the planetary interior because of numerical oscillation. One effective approach for such numerically problematic behavior is an implicit treatment of advection term. In this study, three types of implicit strategy are discussed. First is the full implicit treatment with iterative non-linear solver which uses transported density by maker-in-cell method as nonlinear update. The maker-in-cell method is commonly used as low diffusive advection method, but is computationally expensive with makers to mesh interpolation. Second approach uses semi-Lagrangian method for nonlinear update instead of the maker-in-cell method to reduce computational cost. Third approach is to solve the Stokes flow equation combined with the linearized advection term in central-difference discretization to avoid the nonlinear update by the transport. In the second and third algorithms, physical value at the next time step is still transported by low diffusive maker-in-cell method. These three types of implicit method are examined by numerical experiment.

  19. SIMULATION OF DISPERSION OF A POWER PLANT PLUME USING AN ADAPTIVE GRID ALGORITHM

    EPA Science Inventory

    A new dynamic adaptive grid algorithm has been developed for use in air quality modeling. This algorithm uses a higher order numerical scheme?the piecewise parabolic method (PPM)?for computing advective solution fields; a weight function capable of promoting grid node clustering ...

  20. First-Order Hyperbolic System Method for Time-Dependent Advection-Diffusion Problems

    NASA Technical Reports Server (NTRS)

    Mazaheri, Alireza; Nishikawa, Hiroaki

    2014-01-01

    A time-dependent extension of the first-order hyperbolic system method for advection-diffusion problems is introduced. Diffusive/viscous terms are written and discretized as a hyperbolic system, which recovers the original equation in the steady state. The resulting scheme offers advantages over traditional schemes: a dramatic simplification in the discretization, high-order accuracy in the solution gradients, and orders-of-magnitude convergence acceleration. The hyperbolic advection-diffusion system is discretized by the second-order upwind residual-distribution scheme in a unified manner, and the system of implicit-residual-equations is solved by Newton's method over every physical time step. The numerical results are presented for linear and nonlinear advection-diffusion problems, demonstrating solutions and gradients produced to the same order of accuracy, with rapid convergence over each physical time step, typically less than five Newton iterations.

  1. Warm-air advection, air mass transformation and fog causes rapid ice melt

    NASA Astrophysics Data System (ADS)

    Tjernström, Michael; Shupe, Matthew D.; Brooks, Ian M.; Persson, P. Ola G.; Prytherch, John; Salisbury, Dominic J.; Sedlar, Joseph; Achtert, Peggy; Brooks, Barbara J.; Johnston, Paul E.; Sotiropoulou, Georgia; Wolfe, Dan

    2015-07-01

    Direct observations during intense warm-air advection over the East Siberian Sea reveal a period of rapid sea-ice melt. A semistationary, high-pressure system north of the Bering Strait forced northward advection of warm, moist air from the continent. Air-mass transformation over melting sea ice formed a strong, surface-based temperature inversion in which dense fog formed. This induced a positive net longwave radiation at the surface while reducing net solar radiation only marginally; the inversion also resulted in downward turbulent heat flux. The sum of these processes enhanced the surface energy flux by an average of ~15 W m-2 for a week. Satellite images before and after the episode show sea-ice concentrations decreasing from > 90% to ~50% over a large area affected by the air-mass transformation. We argue that this rapid melt was triggered by the increased heat flux from the atmosphere due to the warm-air advection.

  2. Aerosol composition and properties variation at the ground and over the column under different air masses advection in South Italy.

    PubMed

    Pavese, G; Lettino, A; Calvello, M; Esposito, F; Fiore, S

    2016-04-01

    Aerosol composition and properties variation under the advection of different air masses were investigated, as case studies, by contemporary measurements over the atmospheric column and at the ground in a semi-rural site in South Italy. The absence of local strong sources in this area allowed to characterize background aerosol and to compare particle mixing effects under various atmospheric circulation conditions. Aerosol optical depth (AOD) and Ǻngström parameters from radiometric measurements allowed the detection and identification of polluted, dust, and volcanic atmospheric conditions. AODs were the input for a suitable model to evaluate the columnar aerosol composition, according to six main atmospheric components (water-soluble, soot, sea salt accumulation, sea salt coarse, mineral dus,t and biological). Scanning electron microscope (SEM) analysis of particulate sampled with a 13-stage impactor at the ground showed not only fingerprints typical of the different air masses but also the effects of transport and aging on atmospheric particles, suggesting processes that changed their chemical and optical properties. Background columnar aerosol was characterized by 72% of water-soluble and soot, in agreement with ground-based findings that highlighted 60% of contribution from anthropogenic carbonate particles and soot. In general, a good agreement between ground-based and columnar results was observed. Under the advection of trans-boundary air masses, water-soluble and soot were always present in columnar aerosol, whereas, in variable percentages, sea salt and mineral particles characterized both dust and volcanic conditions. At the ground, sulfates characterized the amorphous matrix produced in finer stages by the evaporation of solutions of organic and inorganic aerosols. Sulfates were also one of the key players involved in heterogeneous chemical reactions, producing complex secondary aerosol, as such clay-sulfate internally mixed particle externally mixed

  3. Altimetric lagrangian advection to reconstruct Pacific Ocean fine scale surface tracer fields

    NASA Astrophysics Data System (ADS)

    Rogé, Marine; Morrow, Rosemary; Dencausse, Guillaume

    2015-04-01

    In past studies, lagrangian stirring of surface tracer fields by altimetric surface geostrophic currents has been performed in different mid to high-latitude regions, showing good results in reconstructing finer-scale tracer patterns. Here we apply the technique to three different regions in the eastern and western tropical Pacific, and in the subtropical southwest Pacific. Initial conditions are derived from weekly gridded temperature and salinity fields, based on hydrographic data and Argo. Validation of the improved fine-scale surface tracer fields is performed using satellite AMSRE SST data, and high-resolution ship thermosalinograph data. We test two kinds of lagrangian advection. The standard one-way advection is shown to introduce an increased tracer bias as the advection time increases. Indeed, since we only use passive stirring, a bias is introduced from the missing physics, such as air-sea fluxes or mixing. A second "backward-forward" advection technique is shown to reduce the seasonal bias, but more data is lost around coasts and islands, a strong handicap in the tropical Pacific with many small islands. In the subtropical Pacific Ocean, the mesoscale temperature and salinity fronts are well represented by the one-way advection over a 10-day advection time, including westward propagating features not apparent in the initial fields. In the tropics, the results are less clear. The validation is hampered by the complex vertical stratification, and the technique is limited by the lack of accurate surface currents for the stirring - the gridded altimetric fields poorly represent the meridional currents, and are not detecting the fast tropical instability waves, nor the wind-driven circulation. We suggest that the passive lateral stirring technique is efficient in regions with moderate the high mesoscale energy and correlated mesoscale surface temperature and surface height. In other regions, more complex dynamical processes may need to be included.

  4. Altimetric Lagrangian advection to reconstruct Pacific Ocean fine-scale surface tracer fields

    NASA Astrophysics Data System (ADS)

    Rogé, Marine; Morrow, Rosemary A.; Dencausse, Guillaume

    2015-09-01

    In past studies, Lagrangian stirring of surface tracer fields by altimetric surface geostrophic currents has been performed in different mid- to high-latitude regions, showing good results in reconstructing finer scale tracer patterns. Here, we explore the pertinence of the technique in the western equatorial Pacific and in the subtropical southwest Pacific. Initial conditions are derived from weekly gridded low-resolution temperature and salinity fields based on in situ hydrographic data. Validation of the reconstructed fine-scale surface tracer fields is performed using satellite AMSRE Sea Surface Temperature data and high-resolution ship thermosalinograph data. We test two kinds of Lagrangian advection. The standard one-way advection leads to an increased error as the advection time increases, due to the missing physics, such as air-sea fluxes or non-geostrophic dynamics. A second "backward-forward" advection technique is explored to reduce this bias in the tracer field, with improved results. In the subtropical southwest Pacific Ocean, the mesoscale temperature and salinity fronts are well represented by both Lagrangian advection techniques over a short 7- to 14-day advection time, including westward-propagating features not apparent in the initial fields. In the tropics, the results are less clear. The validation is hampered by the complex vertical stratification, and the lateral stirring technique is limited by the pertinence of using geostrophic surface current fields in the tropics. We suggest that the passive lateral stirring technique is efficient in regions with moderate to high mesoscale energy, where mesoscale surface tracer and surface height fields are correlated. In other regions, more complex dynamical processes may need to be included.

  5. Large-eddy Advection in Evapotranspiration Estimates from an Array of Eddy Covariance Towers

    NASA Astrophysics Data System (ADS)

    Lin, X.; Evett, S. R.; Gowda, P. H.; Colaizzi, P. D.; Aiken, R.

    2014-12-01

    Evapotranspiration was continuously measured by an array of eddy covariance systems and large weighting lysimeter in a sorghum in Bushland, Texas in 2014. The advective divergence from both horizontal and vertical directions were measured through profile measurements above canopy. All storage terms were integrated from the depth of soil heat flux plate to the height of eddy covariance measurement. Therefore, a comparison between the eddy covariance system and large weighing lysimeter was conducted on hourly and daily basis. The results for the discrepancy between eddy covariance towers and the lysimeter will be discussed in terms of advection and storage contributions in time domain and frequency domain.

  6. A comparison of MCNP4C electron transport with ITS 3.0 and experiment at incident energies between 100 keV and 20 MeV: influence of voxel size, substeps and energy indexing algorithm

    NASA Astrophysics Data System (ADS)

    Schaart, Dennis R.; Jansen, Jan Th M.; Zoetelief, Johannes; de Leege, Piet F. A.

    2002-05-01

    The condensed-history electron transport algorithms in the Monte Carlo code MCNP4C are derived from ITS 3.0, which is a well-validated code for coupled electron-photon simulations. This, combined with its user-friendliness and versatility, makes MCNP4C a promising code for medical physics applications. Such applications, however, require a high degree of accuracy. In this work, MCNP4C electron depth-dose distributions in water are compared with published ITS 3.0 results. The influences of voxel size, substeps and choice of electron energy indexing algorithm are investigated at incident energies between 100 keV and 20 MeV. Furthermore, previously published dose measurements for seven beta emitters are simulated. Since MCNP4C does not allow tally segmentation with the *F8 energy deposition tally, even a homogeneous phantom must be subdivided in cells to calculate the distribution of dose. The repeated interruption of the electron tracks at the cell boundaries significantly affects the electron transport. An electron track length estimator of absorbed dose is described which allows tally segmentation. In combination with the ITS electron energy indexing algorithm, this estimator appears to reproduce ITS 3.0 and experimental results well. If, however, cell boundaries are used instead of segments, or if the MCNP indexing algorithm is applied, the agreement is considerably worse.

  7. Modeling pollutant transport using a meshless-lagrangian particle model

    SciTech Connect

    Carrington, D. B.; Pepper, D. W.

    2002-01-01

    A combined meshless-Lagrangian particle transport model is used to predict pollutant transport over irregular terrain. The numerical model for initializing the velocity field is based on a meshless approach utilizing multiquadrics established by Kansa. The Lagrangian particle transport technique uses a random walk procedure to depict the advection and dispersion of pollutants over any type of surface, including street and city canyons

  8. Level set simulation of coupled advection-diffusion and pore structure evolution due to mineral precipitation in porous media

    SciTech Connect

    Xiaoyi Li; Hai Huang; Paul Meakin

    2008-09-01

    The nonlinear coupling of fluid flow, reactive chemical transport and pore structure changes due to mineral precipitation (or dissolution) in porous media play a key role in a wide variety of processes of scientific interest and practical importance. Significant examples include the evolution of fracture apertures in the subsurface, acid fracturing stimulation for enhanced oil recovery and immobilizations of radionuclides and heavy metals in contaminated groundwater. We have developed a pore-scale simulation technique for modeling coupled reactive flow and structure evolution in porous media and fracture apertures. Advection, diffusion, and mineral precipitation resulting in changes in pore geometries are treated simultaneously by solving fully coupled fluid momentum and reactive solute transport equations. In this model, the reaction-induced evolution of solid grain surfaces is captured using a level set method. A sub-grid representation of the interface, based on the level set approach, is used instead of pixel representations of the interface often used in cellular-automata and most lattice-Boltzmann methods. The model is validated against analytical solutions for simplified geometries. Precipitation processes were simulated under various flow conditions and reaction rates, and the resulting pore geometry changes are discussed. Quantitative relationships between permeability and porosity under various flow conditions and reaction rates are reported.

  9. BEHAVIOR OF SENSITIVITIES IN THE ONE-DIMENSIONAL ADVECTION-DISPERSION EQUATION: IMPLICATIONS FOR PARAMETER ESTIMATION AND SAMPLING DESIGN.

    USGS Publications Warehouse

    Knopman, Debra S.; Voss, Clifford I.

    1987-01-01

    The spatial and temporal variability of sensitivities has a significant impact on parameter estimation and sampling design for studies of solute transport in porous media. Physical insight into the behavior of sensitivities is offered through an analysis of analytically derived sensitivities for the one-dimensional form of the advection-dispersion equation. When parameters are estimated in regression models of one-dimensional transport, the spatial and temporal variability in sensitivities influences variance and covariance of parameter estimates. Several principles account for the observed influence of sensitivities on parameter uncertainty. (1) Information about a physical parameter may be most accurately gained at points in space and time. (2) As the distance of observation points from the upstream boundary increases, maximum sensitivity to velocity during passage of the solute front increases. (3) The frequency of sampling must be 'in phase' with the S shape of the dispersion sensitivity curve to yield the most information on dispersion. (4) The sensitivity to the dispersion coefficient is usually at least an order of magnitude less than the sensitivity to velocity. (5) The assumed probability distribution of random error in observations of solute concentration determines the form of the sensitivities. (6) If variance in random error in observations is large, trends in sensitivities of observation points may be obscured by noise. (7) Designs that minimize the variance of one parameter may not necessarily minimize the variance of other parameters.

  10. A global spectral element model for poisson equations and advective flow over a sphere

    NASA Astrophysics Data System (ADS)

    Mei, Huan; Wang, Faming; Zeng, Zhong; Qiu, Zhouhua; Yin, Linmao; Li, Liang

    2016-03-01

    A global spherical Fourier-Legendre spectral element method is proposed to solve Poisson equations and advective flow over a sphere. In the meridional direction, Legendre polynomials are used and the region is divided into several elements. In order to avoid coordinate singularities at the north and south poles in the meridional direction, Legendre-Gauss-Radau points are chosen at the elements involving the two poles. Fourier polynomials are applied in the zonal direction for its periodicity, with only one element. Then, the partial differential equations are solved on the longitude-latitude meshes without coordinate transformation between spherical and Cartesian coordinates. For verification of the proposed method, a few Poisson equations and advective flows are tested. Firstly, the method is found to be valid for test cases with smooth solution. The results of the Poisson equations demonstrate that the present method exhibits high accuracy and exponential convergence. Highprecision solutions are also obtained with near negligible numerical diffusion during the time evolution for advective flow with smooth shape. Secondly, the results of advective flow with non-smooth shape and deformational flow are also shown to be reasonable and effective. As a result, the present method is proved to be capable of solving flow through different types of elements, and thereby a desirable method with reliability and high accuracy for solving partial differential equations over a sphere.

  11. An objective method for computing advective surface velocities from sequential infrared satellite images

    NASA Astrophysics Data System (ADS)

    Emery, W. J.; Thomas, A. C.; Collins, M. J.; Crawford, W. R.; Mackas, D. L.

    1986-11-01

    Using cross correlations between sequential infrared satellite images, an objective technique is developed to compute advective sea surface velocities. Cross correlations are computed in 32 × 32 pixel search (second image) and 22 × 22 template (first image) windows from gradients of sea surface temperature computed from the satellite images. Velocity vectors, computed from sequential images of the British Columbia coastal ocean, generally appear coherent and consistent with the seasonal surface current in the region. During periods of strong wind forcing, as indicated by maps of sea level pressure, the image advective velocities are stronger and more coherent spatially and appear to cross surface temperature gradients; when winds are weaker, the advective velocities correspond better with the infrared temperature patterns, suggesting the increased contribution of the geostrophic current to the surface flow. Velocities determined from coincident, near-surface drogued (5-10 m) buoys, positioned every half hour by internal LORAN-C units in mid-June, show excellent agreement with the image advective velocities. In addition, conductivity, temperature, and depth (CTD) measurements (taken during the buoy tracking) confirm the homogeneity of the upper 10 m, and CTD-derived geostrophic currents are consistent with both buoy and sequential image displacement velocities.

  12. Satellite-advection based solar forecasting: lessons learned and progress towards probabalistic solar forecasting

    NASA Astrophysics Data System (ADS)

    Rogers, M. A.

    2015-12-01

    Using satellite observations from GOES-E and GOES-W platforms in concert with GFS-derived cloud-level winds and a standalone radiative transfer model, an advection-derived forecast for surface GHI over the continental United States, with intercomparison between forecasts for four zones over the CONUS and Central Pacific with SURFRAD results. Primary sources for error in advection-based forecasts, primarily driven by false- or mistimed ramp events are discussed, with identification of error sources quantified along with techniques used to improve advection-based forecasts to approximately 10% MAE for designated surface locations. Development of a blended steering wind product utilizing NWP output combined with satellite-derived winds from AMV techniques to improve 0-1 hour advection forecasts will be discussed. Additionally, the use of two years' of solar forecast observations in the development of a prototype probablistic forecast for ramp events will be shown, with the intent of increasing the use of satellite-derived forecasts for grid operators and optimizing integration of renewable resources into the power grid. Elements of the work were developed under the 'Public-Private-Academic Partnership to Advance Solar Power Forecasting' project spearheaded by the National Center for Atmospheric Research.

  13. MECHANISM OF OUTFLOWS IN ACCRETION SYSTEM: ADVECTIVE COOLING CANNOT BALANCE VISCOUS HEATING?

    SciTech Connect

    Gu, Wei-Min

    2015-01-20

    Based on the no-outflow assumption, we investigate steady-state, axisymmetric, optically thin accretion flows in spherical coordinates. By comparing the vertically integrated advective cooling rate with the viscous heating rate, we find that the former is generally less than 30% of the latter, which indicates that the advective cooling itself cannot balance the viscous heating. As a consequence, for radiatively inefficient flows with low accretion rates such as M-dot ≲10{sup −3} M-dot {sub Edd}, where M-dot {sub Edd} is the Eddington accretion rate, the viscous heating rate will be larger than the sum of the advective cooling rate and the radiative cooling one. Thus, no thermal equilibrium can be established under the no-outflow assumption. We therefore argue that in such cases outflows ought to occur and take away more than 70% of the thermal energy generated by viscous dissipation. Similarly, for optically thick flows with extremely large accretion rates such as M-dot ≳10 M-dot {sub Edd}, outflows should also occur owing to the limited advection and the low efficiency of radiative cooling. Our results may help to understand the mechanism of outflows found in observations and numerical simulations.

  14. Wind Tunnel Measurement of Turbulent and Advective Scalar Fluxes: A Case Study on Intersection Ventilation

    PubMed Central

    Kukačka, Libor; Nosek, Štĕpán; Kellnerová, Radka; Jurčáková, Klára; Jaňour, Zbyněk

    2012-01-01

    The objective of this study is to determine processes of pollution ventilation in the X-shaped street intersection in an idealized symmetric urban area for the changing approach flow direction. A unique experimental setup for simultaneous wind tunnel measurement of the flow velocity and the tracer gas concentration in a high temporal resolution is assembled. Advective horizontal and vertical scalar fluxes are computed from averaged measured velocity and concentration data within the street intersection. Vertical advective and turbulent scalar fluxes are computed from synchronized velocity and concentration signals measured in the plane above the intersection. All the results are obtained for five approach flow directions. The influence of the approach flow on the advective and turbulent fluxes is determined. The contribution of the advective and turbulent flux to the ventilation is discussed. Wind direction with the best dispersive conditions in the area is found. The quadrant analysis is applied to the synchronized signals of velocity and concentration fluctuation to determine events with the dominant contribution to the momentum flux and turbulent scalar flux. PMID:22649290

  15. Alteration of chaotic advection in blood flow around partial blockage zone: Role of hematocrit concentration

    NASA Astrophysics Data System (ADS)

    Maiti, Soumyabrata; Chaudhury, Kaustav; DasGupta, Debabrata; Chakraborty, Suman

    2013-01-01

    Spatial distributions of particles carried by blood exhibit complex filamentary pattern under the combined effects of geometrical irregularities of the blood vessels and pulsating pumping by the heart. This signifies the existence of so called chaotic advection. In the present article, we argue that the understanding of such pathologically triggered chaotic advection is incomplete without giving due consideration to a major constituent of blood: abundant presence of red blood cells quantified by the hematocrit (HCT) concentration. We show that the hematocrit concentration in blood cells can alter the filamentary structures of the spatial distribution of advected particles in an intriguing manner. Our results reveal that there primarily are two major impacts of HCT concentrations towards dictating the chaotic dynamics of blood flow: changing the zone of influence of chaotic mixing and determining the enhancement of residence time of the advected particles away from the wall. This, in turn, may alter the extent of activation of platelets or other reactive biological entities, bearing immense consequence towards dictating the biophysical mechanisms behind possible life-threatening diseases originating in the circulatory system.

  16. Evaluation of a mechanistic algorithm to calculate the influence of a shallow water table on hydrology sediment and pesticide transport through vegetative filter strips

    NASA Astrophysics Data System (ADS)

    Lauvernet, C.; Munoz-Carpena, R.; Carluer, N.

    2012-04-01

    Natural or introduced areas of vegetation, also known as vegetative filter strips (VFS), are a common environmental control practice to protect surface water bodies from human influence. In Europe, VFS are placed along the water network to protect from agrochemical drift during applications, in addition to runoff control. Their bottomland placement next to the streams often implies the presence of a seasonal shallow water table which can have a profound impact on the efficiency of the buffer zone (Lacas et al. 2005). A physically-based algorithm describing ponded infiltration into soils bounded by a water table, proposed by Salvucci and Enthekabi (1995), was further developed to simulate VFS dynamics by making it explicit in time, account for unsteady rainfall conditions, and by coupling to a numerical overland flow and transport model (VFSMOD) (Munoz-Carpena et al., submitted). In this study, we evaluate the importance of the presence of a shallow water table on filter efficiency (reductions in runoff, sediment and pesticide mass), in the context of all other input factors used to describe the system. Global sensitivity analysis (GSA) was used to rank the important input factors and the presence of interactions, as well as the contribution of the important factors to the output variance. GSA of VSFMOD modified for shallow water table was implemented on 2 sites selected in France because they represent different agro-pedo-climatic conditions for which we can compare the role of the factors influencing the performance of grassed buffer strips for surface runoff, sediment and pesticide removal. The first site at Morcille watershed in the Beaujolais wineyard (Rhône-Alpes) contains a very permeable sandy-clay with water table depth varying with the season (very deep in summer and shallow in winter), with a high slope (20 to 30%), and subject to strong seasonal storms (semi-continental, Mediterranean climate). The second site at La Jailliere (Loire-Atlantique, ARVALIS

  17. Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow

    NASA Astrophysics Data System (ADS)

    Hansel, Colleen M.; Benner, Shawn G.; Neiss, Jim; Dohnalkova, Alice; Kukkadapu, Ravi K.; Fendorf, Scott

    2003-08-01

    Iron (hydr)oxides not only serve as potent sorbents and repositories for nutrients and contaminants but also provide a terminal electron acceptor for microbial respiration. The microbial reduction of Fe (hydr)oxides and the subsequent secondary solid-phase transformations will, therefore, have a profound influence on the biogeochemical cycling of Fe as well as associated metals. Here we elucidate the pathways and mechanisms of secondary mineralization during dissimilatory iron reduction by a common iron-reducing bacterium, Shewanella putrefaciens (strain CN32), of 2-line ferrihydrite under advective flow conditions. Secondary mineralization of ferrihydrite occurs via a coupled, biotic-abiotic pathway primarily resulting in the production of magnetite and goethite with minor amounts of green rust. Operating mineralization pathways are driven by competing abiotic reactions of bacterially generated ferrous iron with the ferrihydrite surface. Subsequent to the initial sorption of ferrous iron on ferrihydrite, goethite (via dissolution/reprecipitation) and/or magnetite (via solid-state conversion) precipitation ensues resulting in the spatial coupling of both goethite and magnetite with the ferrihydrite surface. The distribution of goethite and magnetite within the column is dictated, in large part, by flow-induced ferrous Fe profiles. While goethite precipitation occurs over a large Fe(II) concentration range, magnetite accumulation is only observed at concentrations exceeding 0.3 mmol/L (equivalent to 0.5 mmol Fe[II]/g ferrihydrite) following 16 d of reaction. Consequently, transport-regulated ferrous Fe profiles result in a progression of magnetite levels downgradient within the column. Declining microbial reduction over time results in lower Fe(II) concentrations and a subsequent shift in magnetite precipitation mechanisms from nucleation to crystal growth. While the initial precipitation rate of goethite exceeds that of magnetite, continued growth is inhibited by

  18. Genetic algorithms

    NASA Technical Reports Server (NTRS)

    Wang, Lui; Bayer, Steven E.

    1991-01-01

    Genetic algorithms are mathematical, highly parallel, adaptive search procedures (i.e., problem solving methods) based loosely on the processes of natural genetics and Darwinian survival of the fittest. Basic genetic algorithms concepts are introduced, genetic algorithm applications are introduced, and results are presented from a project to develop a software tool that will enable the widespread use of genetic algorithm technology.

  19. Subsurface Xenon Migration by Atmospheric Pumping Using an Implicit Non-Iterative Algorithm for a Locally 1D Dual-Porosity Model

    NASA Astrophysics Data System (ADS)

    Annewandter, R.; Kalinowksi, M. B.

    2009-04-01

    An underground nuclear explosion injects radionuclids in the surrounding host rock creating an initial radionuclid distribution. In the case of fractured permeable media, cyclical changes in atmospheric pressure can draw gaseous species upwards to the surface, establishing a ratcheting pump effect. The resulting advective transport is orders of magnitude more significant than transport by molecular diffusion. In the 1990s the US Department of Energy funded the socalled Non-Proliferation Experiment conducted by the Lawrence Livermore National Laboratory to investigate this barometric pumping effect for verifying compliance with respect to the Comprehensive Nuclear Test Ban Treaty. A chemical explosive of approximately 1 kt TNT-equivalent has been detonated in a cavity located 390 m deep in the Rainier Mesa (Nevada Test Site) in which two tracer gases were emplaced. Within this experiment SF6 was first detected in soil gas samples taken near fault zones after 50 days and 3He after 325 days. For this paper a locally one-dimensional dual-porosity model for flow along the fracture and within the permeable matrix was used after Nilson and Lie (1990). Seepage of gases and diffusion of tracers between fracture and matrix are accounted. The advective flow along the fracture and within the matrix block is based on the FRAM filtering remedy and methodology of Chapman. The resulting system of equations is solved by an implicit non-iterative algorithm. Results on time of arrival and subsurface concentration levels for the CTBT-relevant xenons will be presented.

  20. Improving estimates of ecosystem metabolism by reducing effects of tidal advection on dissolved oxygen time series-Abstract

    EPA Science Inventory

    Continuous time series of dissolved oxygen (DO) have been used to compute estimates of metabolism in aquatic ecosystems. Central to this open water or "Odum" method is the assumption that the DO time is not strongly affected by advection and that effects due to advection or mixin...

  1. The Global Modeling Initiative Assessment Model: Model Description, Integration and Testing of the Transport Shell

    SciTech Connect

    Rotman, D.A.; Tannahill, J.R.; Kinnison, D.E.; Connell, P.S.; Bergmann, D.; Proctor, D.; Rodriquez, J.M.; Lin, S.J.; Rood, R.B.; Prather, M.J.; Rasch, P.J.; Considine, D.B.; Ramaroson, R.; Kawa, S.R.

    2000-04-25

    We describe the three dimensional global stratospheric chemistry model developed under the NASA Global Modeling Initiative (GMI) to assess the possible environmental consequences from the emissions of a fleet of proposed high speed civil transport aircraft. This model was developed through a unique collaboration of the members of the GMI team. Team members provided computational modules representing various physical and chemical processes, and analysis of simulation results through extensive comparison to observation. The team members' modules were integrated within a computational framework that allowed transportability and simulations on massively parallel computers. A unique aspect of this model framework is the ability to interchange and intercompare different submodules to assess the sensitivity of numerical algorithms and model assumptions to simulation results. In this paper, we discuss the important attributes of the GMI effort, describe the GMI model computational framework and the numerical modules representing physical and chemical processes. As an application of the concept, we illustrate an analysis of the impact of advection algorithms on the dispersion of a NO{sub y}-like source in the stratosphere which mimics that of a fleet of commercial supersonic transports (High-Speed Civil Transport (HSCT)) flying between 17 and 20 kilometers.

  2. Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model

    USGS Publications Warehouse

    Warner, J.C.; Sherwood, C.R.; Signell, R.P.; Harris, C.K.; Arango, H.G.

    2008-01-01

    We are developing a three-dimensional numerical model that implements algorithms for sediment transport and evolution of bottom morphology in the coastal-circulation model Regional Ocean Modeling System (ROMS v3.0), and provides a two-way link between ROMS and the wave model Simulating Waves in the Nearshore (SWAN) via the Model-Coupling Toolkit. The coupled model is applicable for fluvial, estuarine, shelf, and nearshore (surfzone) environments. Three-dimensional radiation-stress terms have been included in the momentum equations, along with effects of a surface wave roller model. The sediment-transport algorithms are implemented for an unlimited number of user-defined non-cohesive sediment classes. Each class has attributes of grain diameter, density, settling velocity, critical stress threshold for erosion, and erodibility constant. Suspended-sediment transport in the water column is computed with the same advection-diffusion algorithm used for all passive tracers and an additional algorithm for vertical settling that is not limited by the CFL criterion. Erosion and deposition are based on flux formulations. A multi-level bed framework tracks the distribution of every size class in each layer and stores bulk properties including layer thickness, porosity, and mass, allowing computation of bed morphology and stratigraphy. Also tracked are bed-surface properties including active-layer thickness, ripple geometry, and bed roughness. Bedload transport is calculated for mobile sediment classes in the top layer. Bottom-boundary layer submodels parameterize wave-current interactions that enhance bottom stresses and thereby facilitate sediment transport and increase bottom drag, creating a feedback to the circulation. The model is demonstrated in a series of simple test cases and a realistic application in Massachusetts Bay. ?? 2008 Elsevier Ltd. All rights reserved.

  3. A comparative study of AGN feedback algorithms

    NASA Astrophysics Data System (ADS)

    Wurster, J.; Thacker, R. J.

    2013-05-01

    Modelling active galactic nuclei (AGN) feedback in numerical simulations is both technically and theoretically challenging, with numerous approaches having been published in the literature. We present a study of five distinct approaches to modelling AGN feedback within gravitohydrodynamic simulations of major mergers of Milky Way-sized galaxies. To constrain differences to only be between AGN feedback models, all simulations start from the same initial conditions and use the same star formation algorithm. Most AGN feedback algorithms have five key aspects: the black hole accretion rate, energy feedback rate and method, particle accretion algorithm, black hole advection algorithm and black hole merger algorithm. All models follow different accretion histories, and in some cases, accretion rates differ by up to three orders of magnitude at any given time. We consider models with either thermal or kinetic feedback, with the associated energy deposited locally around the black hole. Each feedback algorithm modifies the region around the black hole to different extents, yielding gas densities and temperatures within r ˜ 200 pc that differ by up to six orders of magnitude at any given time. The particle accretion algorithms usually maintain good agreement between the total mass accreted by dot{M} dt and the total mass of gas particles removed from the simulation, although not all algorithms guarantee this to be true. The black hole advection algorithms dampen inappropriate dragging of the black holes by two-body interactions. Advecting the black hole a limited distance based upon local mass distributions has many desirably properties, such as avoiding large artificial jumps and allowing the possibility of the black hole remaining in a gas void. Lastly, two black holes instantly merge when given criteria are met, and we find a range of merger times for different criteria. This is important since the AGN feedback rate changes across the merger in a way that is dependent

  4. Hidden Flows: Advection Between Topographic Highs and Lows in a Patterned Wetland Driven By Instantaneous Water Level Equilibration

    NASA Astrophysics Data System (ADS)

    Watts, D.; Cohen, M. J.; Kaplan, D. A.; Mclaughlin, D. L.; Osborne, T.

    2013-12-01

    Groundwater movement within wetlands can have substantial implications for solute transport even where surface water is the dominant flowpath. For example, water table head gradients driven by evapotranspiration have been used to explain elevated nutrient levels in higher-elevation patches. However, where lateral transport occurs via nearly instantaneous water table equilibration of the water table between adjacent patches, no sustained hydraulic gradient will be observed even though water and solute movement is occurring. Here we present evidence for this effect in the ridge-slough patterned landscape of the Everglades (Florida, USA). Ridges and sloughs occupy different elevation modes, with ridges between 5 and 30 cm higher than sloughs in the present-day system. In the absence of water level equilibration between ridges and sloughs, we would expect distinct divergence in water levels when the water table drops below the ridge soil surface but sloughs remain inundated due to differences in specific yield (Sy) between ridges (Sy~0.2) and sloughs (Sy~1.0). On the contrary, we observed a 'lock-step' response in the diurnal signature of the water table, suggesting a mixing of open-water and ground-water signatures due to equilibration (i.e., advection) of water from sloughs to ridges. This mechanism may help explain the observation of higher soil phosphorus with higher soil elevation, a relationship that breaks down as ridge-slough elevation differences degrade. We place this mechanism in the context of vertical and horizontal conductivites of the Everglades peats and discuss the implications for solute transport.

  5. Particulate export vs lateral advection in the Antarctic Polar Front (Southern Pacific Ocean)

    NASA Astrophysics Data System (ADS)

    Tesi, T.; Langone, L.; Ravaioli, M.; Capotondi, L.; Giglio, F.

    2012-04-01

    The overarching goal of our study was to describe and quantify the influence of lateral advection relative to the vertical export in the Antarctic Polar Front (Southern Pacific Ocean). In areas where lateral advection of particulate material is significant, budgets of bioactive elements can be inaccurate if fluxes through the water column and to the seabed are exclusively interpreted as passive sinking of particles. However, detailed information on the influence of lateral advection in the water column in the southern ocean is lacking. With this in mind, our study focused between the twilight zone (i.e. mesopelagic) and the benthic nepheloid layer to understand the relative importance of lateral flux with increasing water depth. Measurements were performed south of the Antarctic Polar Front for 1 year (January 10th 1999-January 3rd 2000) at 900, 1300, 2400, and 3700 m from the sea surface. The study was carried out using a 3.5 km long mooring line instrumented with sediment traps, current meters and sensors of temperature and conductivity. Sediment trap samples were characterized via several parameters including total mass flux, elemental composition (organic carbon, total nitrogen, biogenic silica, and calcium carbonate), concentration of metals (aluminum, iron, barium, and manganese), 210Pb activity, and foraminifera taxonomy. High fluxes of biogenic particles were observed in both summer 1999 and 2000 as a result of seasonal algal blooms associated with sea ice retreat and water column stratification. During no-productive periods, several high energy events occurred and resulted in advecting resuspended biogenic particles from flat-topped summits of the Pacific Antarctic Ridge. Whereas the distance between seabed and uppermost sediment traps was sufficient to avoid lateral advection processes, resuspension was significant in the lowermost sediment traps accounting for ~60 and ~90% of the material caught at 2400 and 3700 m, respectively. Samples collected during

  6. Perturbation analysis of steady and unsteady electrohydrodynamic chaotic advection inside translating drops

    NASA Astrophysics Data System (ADS)

    Wu, Fan; Vainchtein, Dmitri; Ward, Thomas

    2015-08-01

    A drop translating in the presence of an electric field is studied analytically. The flow is a combination of a Hadamard-Rybczynski and a Taylor circulation due to the translation and electric field, respectively. We consider chaotic advection that is generated by (1) tilting and (2) time-dependent modulation of the electric field. For the analysis we consider small perturbations in time and space to what is otherwise an integrable flow. By using a robust analytical technique we find an adiabatic invariant (AI) for the system by averaging the equations of motion. The chaotic advection is due to quasirandom jumps of the AI after crossing the separatrix of the unperturbed flow. We demonstrate that the asymptotic analysis leads to a set of criteria that can be used to optimize stirring in these systems.

  7. Advective-diffusive motion on large scales from small-scale dynamics with an internal symmetry

    NASA Astrophysics Data System (ADS)

    Marino, Raffaele; Aurell, Erik

    2016-06-01

    We consider coupled diffusions in n -dimensional space and on a compact manifold and the resulting effective advective-diffusive motion on large scales in space. The effective drift (advection) and effective diffusion are determined as a solvability conditions in a multiscale analysis. As an example, we consider coupled diffusions in three-dimensional space and on the group manifold SO(3) of proper rotations, generalizing results obtained by H. Brenner [J. Colloid Interface Sci. 80, 548 (1981), 10.1016/0021-9797(81)90214-9]. We show in detail how the analysis can be conveniently carried out using local charts and invariance arguments. As a further example, we consider coupled diffusions in two-dimensional complex space and on the group manifold SU(2). We show that although the local operators may be the same as for SO(3), due to the global nature of the solvability conditions the resulting diffusion will differ and generally be more isotropic.

  8. Reaction-diffusion-advection approach to spatially localized treadmilling aggregates of molecular motors

    NASA Astrophysics Data System (ADS)

    Yochelis, Arik; Bar-On, Tomer; Gov, Nir S.

    2016-04-01

    Unconventional myosins belong to a class of molecular motors that walk processively inside cellular protrusions towards the tips, on top of actin filament. Surprisingly, in addition, they also form retrograde moving self-organized aggregates. The qualitative properties of these aggregates are recapitulated by a mass conserving reaction-diffusion-advection model and admit two distinct families of modes: traveling waves and pulse trains. Unlike the traveling waves that are generated by a linear instability, pulses are nonlinear structures that propagate on top of linearly stable uniform backgrounds. Asymptotic analysis of isolated pulses via a simplified reaction-diffusion-advection variant on large periodic domains, allows to draw qualitative trends for pulse properties, such as the amplitude, width, and propagation speed. The results agree well with numerical integrations and are related to available empirical observations.

  9. On Vortex Genesis. An Heuristic Model of Convection-Advection Linkages

    NASA Astrophysics Data System (ADS)

    Bouali, S.

    2003-04-01

    We connect to a model of convection roll an appropriate feedback loop (i.e., the advection retroaction) which unfolds a wide range of vorticity behavior. The 3D numerical computations display the conservative aerologic flows of waterspouts and tropical cyclones. Moreover, several simulations exhibit the singular topology of the structure of cyclones eventually trapped in period-2 orbit. On the other hand, additional advection linkages provide our dynamical system with an explicative proof of the tornadogenesis. These amendements modify the model. The airflows are now dissipatives and we investigate the kinematics of these short life span phenomena. The extended model leads the trajectories of air pockets to one or more vortices. The downbursts and microbursts described in the Fujita classification are also simulated. Our heuristic dynamical system lays the foundation of an unified modelisation of vortices. Theory and Direct Numerical Simulation of the vortex genesis are associated in a new perspective.

  10. DPDC (double-pass donor cell): A second-order monotone scheme for advection

    SciTech Connect

    Beason, C W; Margolin, L G

    1988-09-26

    We are developing a new, second-order, monotone scheme for advection. DPDC (i.e., double-pass donor cell) is based on Smolarkiewicz' simple, positive definite method. Both schemes are multipass methods in which upstream approximations to the truncation error are subtracted from the equations. We describe two significant improvements to Smolarkiewicz' method. First, we use a local gauge transformation to convert the method from being positive definite to the stronger condition of being monotone. Second, we analytically approximate the sum of the corrections of all the passes to use in a single corrective pass. This increases the accuracy of the method, but does not increase the order of accuracy. We compare DPDC with van Leer's method for advection of several different pulses in a constant velocity field. 5 refs., 4 figs.

  11. Multi-moment advection scheme in three dimension for Vlasov simulations of magnetized plasma

    SciTech Connect

    Minoshima, Takashi; Matsumoto, Yosuke; Amano, Takanobu

    2013-03-01

    We present an extension of the multi-moment advection scheme [T. Minoshima, Y. Matsumoto, T. Amano, Multi-moment advection scheme for Vlasov simulations, Journal of Computational Physics 230 (2011) 6800–6823] to the three-dimensional case, for full electromagnetic Vlasov simulations of magnetized plasma. The scheme treats not only point values of a profile but also its zeroth to second order piecewise moments as dependent variables, and advances them on the basis of their governing equations. Similar to the two-dimensional scheme, the three-dimensional scheme can accurately solve the solid body rotation problem of a gaussian profile with little numerical dispersion or diffusion. This is a very important property for Vlasov simulations of magnetized plasma. We apply the scheme to electromagnetic Vlasov simulations. Propagation of linear waves and nonlinear evolution of the electron temperature anisotropy instability are successfully simulated with a good accuracy of the energy conservation.

  12. A traceable physical calibration of the vertical advection-diffusion equation for modeling ocean heat uptake

    NASA Astrophysics Data System (ADS)

    Huber, Markus; Tailleux, Remi; Ferreira, David; Kuhlbrodt, Till; Gregory, Jonathan

    2015-04-01

    The classic vertical advection-diffusion (VAD) balance is a central concept in studying the ocean heat budget, in particular in simple climate models (SCMs). Here we present a new framework to calibrate the parameters of the VAD equation to the vertical ocean heat balance of two fully-coupled climate models that is traceable to the models' circulation as well as to vertical mixing and diffusion processes. Based on temperature diagnostics, we derive an effective vertical velocity w∗ and turbulent diffusivity kν∗ for each individual physical process. In steady state, we find that the residual vertical velocity and diffusivity change sign in middepth, highlighting the different regional contributions of isopycnal and diapycnal diffusion in balancing the models' residual advection and vertical mixing. We quantify the impacts of the time evolution of the effective quantities under a transient 1% CO2 simulation and make the link to the parameters of currently employed SCMs.

  13. Estimation and correction of advection effects with single and multiple, conventional and Doppler radars

    NASA Technical Reports Server (NTRS)

    Gal-Chen, T.

    1981-01-01

    The laws of fluid motion are invariant under a Gallilean transformation. For a perfect observing system, the data analysis should, therefore, also be invariant under a Gallilean transformation. This invariance is often not preserved in practical observing systems. In this connection, it is often advisable to perform mesoscale analysis in a frame moving with respect to the earth's surface. In the present investigation the velocity of such a frame is referred to as an advection velocity. The investigation is concerned with remaining problems regarding the Gallilean transformation. The establishment of a frame of reference for the achievement of maximum coherence is considered, taking into account the case of given nonsimultaneous observations of scalars or Cartesian vectors. It is found that advection speed can be estimated objectively if a scalar or Cartesian vector can be observed directly and if, in addition, the time and position of each observation is approximately known.

  14. Sasaki's variational optimization analysis of temperature and moisture advection in a severe storm environment

    NASA Technical Reports Server (NTRS)

    Mcfarland, M. J.

    1975-01-01

    Temperature and moisture advection patterns of dry air intrusion were analyzed by a variational optimization method to relate mesoscale advection to a severe thunderstorm environment. The analysis results presented here were obtained from a case study, May 26, 1973, when a tornado squall line developed in Oklahoma in conjunction with a clearly delineated dry air intrusion. Observations from the synoptic upper air network were used for inputs of horizontal wind components, potential temperature, and mixing ratio at each 50 mb increment from 950 to 100 mb. An objective analysis was performed to assign values of the variables to grid points of a 15 x 14 horizontal grid with approximate 125 km grid spacing at each pressure level. After the analysis the data fields were smoothed using a variational formalism.

  15. Regional-scale advective, diffusive, and eruptive dynamics of CO2 and brine leakage through faults and wellbores

    NASA Astrophysics Data System (ADS)

    Jung, Na-Hyun; Han, Weon Shik; Han, Kyungdoe; Park, Eungyu

    2015-05-01

    Regional-scale advective, diffusive, and eruptive transport dynamics of CO2 and brine within a natural analogue in the northern Paradox Basin, Utah, were explored by integrating numerical simulations with soil CO2 flux measurements. Deeply sourced CO2 migrates through steeply dipping fault zones to the shallow aquifers predominantly as an aqueous phase. Dense CO2-rich brine mixes with regional groundwater, enhancing CO2 dissolution. Linear stability analysis reveals that CO2 could be dissolved completely within only ~500 years. Assigning lower permeability to the fault zones induces fault-parallel movement, feeds up-gradient aquifers with more CO2, and impedes down-gradient fluid flow, developing anticlinal CO2 traps at shallow depths (<300 m). The regional fault permeability that best reproduces field spatial CO2 flux variation is estimated 1 × 10-17 ≤ kh < 1 × 10-16 m2 and 5 × 10-16 ≤ kv < 1 × 10-15 m2. The anticlinal trap serves as an essential fluid source for eruption at Crystal Geyser. Geyser-like discharge sensitively responds to varying well permeability, radius, and CO2 recharge rate. The cyclic behavior of wellbore CO2 leakage decreases with time.

  16. Approximate Solution of Time-Fractional Advection-Dispersion Equation via Fractional Variational Iteration Method

    PubMed Central

    İbiş, Birol

    2014-01-01

    This paper aims to obtain the approximate solution of time-fractional advection-dispersion equation (FADE) involving Jumarie's modification of Riemann-Liouville derivative by the fractional variational iteration method (FVIM). FVIM provides an analytical approximate solution in the form of a convergent series. Some examples are given and the results indicate that the FVIM is of high accuracy, more efficient, and more convenient for solving time FADEs. PMID:24578662

  17. Shadowing and the role of small diffusivity in the chaotic advection of scalars

    NASA Technical Reports Server (NTRS)

    Klapper, I.

    1992-01-01

    Using techniques from shadowing theory, the solution of the scalar advection-diffusion equation is studied. It is shown that, under certain circumstances, the effect of small scalar diffusivity is to smooth the zero-diffusivity solution by averaging local fine-scaled structure against a Gaussian. The method of study depends on shadowing and thus fails for nonuniformly stretching systems, its failure suggesting the ways in which the effects of asymptotically small molecular diffusion can become nonlocal in chaotic fluid flows.

  18. Carbon dioxide seasonality in dynamically ventilated caves: the role of advective fluxes

    NASA Astrophysics Data System (ADS)

    Lang, Marek; Faimon, Jiří; Godissart, Jean; Ek, Camille

    2016-07-01

    The seasonality in cave CO2 levels was studied based on (1) a new data set from the dynamically ventilated Comblain-au-Pont Cave (Dinant Karst Basin, Belgium), (2) archive data from Moravian Karst caves, and (3) published data from caves worldwide. A simplified dynamic model was proposed for testing the effect of all conceivable CO2 fluxes on cave CO2 levels. Considering generally accepted fluxes, i.e., the direct diffusive flux from soils/epikarst, the indirect flux derived from dripwater degassing, and the input/output fluxes linked to cave ventilation, gives the cave CO2 level maxima of 1.9 × 10-2 mol m-3 (i.e., ˜ 440 ppmv), which only slightly exceed external values. This indicates that an additional input CO2 flux is necessary for reaching usual cave CO2 level maxima. The modeling indicates that the additional flux could be a convective advective CO2 flux from soil/epikarst driven by airflow (cave ventilation) and enhanced soil/epikarstic CO2 concentrations. Such flux reaching up to 170 mol s-1 is capable of providing the cave CO2 level maxima up to 3 × 10-2 mol m-3 (70,000 ppmv). This value corresponds to the maxima known from caves worldwide. Based on cave geometry, three types of dynamic caves were distinguished: (1) the caves with the advective CO2 flux from soil/epikarst at downward airflow ventilation mode, (2) the caves with the advective soil/epikarstic flux at upward airflow ventilation mode, and (3) the caves without any soil/epikarstic advective flux. In addition to CO2 seasonality, the model explains both the short-term and seasonal variations in δ13C in cave air CO2.

  19. Approximate solution of time-fractional advection-dispersion equation via fractional variational iteration method.

    PubMed

    Ibiş, Birol; Bayram, Mustafa

    2014-01-01

    This paper aims to obtain the approximate solution of time-fractional advection-dispersion equation (FADE) involving Jumarie's modification of Riemann-Liouville derivative by the fractional variational iteration method (FVIM). FVIM provides an analytical approximate solution in the form of a convergent series. Some examples are given and the results indicate that the FVIM is of high accuracy, more efficient, and more convenient for solving time FADEs. PMID:24578662

  20. A Lagrangian-Eulerian finite element method with adaptive gridding for advection-dispersion problems

    SciTech Connect

    Ijiri, Y.; Karasaki, K.

    1994-02-01

    In the present paper, a Lagrangian-Eulerian finite element method with adaptive gridding for solving advection-dispersion equations is described. The code creates new grid points in the vicinity of sharp fronts at every time step in order to reduce numerical dispersion. The code yields quite accurate solutions for a wide range of mesh Peclet numbers and for mesh Courant numbers well in excess of 1.

  1. POD-Galerkin advection model for convective flow: application to a flapping rectangular supersonic jet

    NASA Astrophysics Data System (ADS)

    Jaunet, V.; Collin, E.; Delville, J.

    2016-05-01

    This article describes a model obtained by applying proper orthogonal decomposition to the advection equation. The resulting set of equations links the POD modes, their temporal and spatial derivatives and the flow convection velocity. It provides a technique to calculate the convection velocity of coherent structures. It follows, from the model, that a priori knowledge of the convection velocity suffices to construct a dynamical model of the flow. This is demonstrated using experimental data.

  2. Angular Distribution of Particles Emerging from a Diffusive Region and its Implications for the Fleck-Canfield Random Walk Algorithm for Implicit Monte Carlo Radiation Transport

    SciTech Connect

    Cooper, M.A.

    2000-07-03

    We present various approximations for the angular distribution of particles emerging from an optically thick, purely isotropically scattering region into a vacuum. Our motivation is to use such a distribution for the Fleck-Canfield random walk method [1] for implicit Monte Carlo (IMC) [2] radiation transport problems. We demonstrate that the cosine distribution recommended in the original random walk paper [1] is a poor approximation to the angular distribution predicted by transport theory. Then we examine other approximations that more closely match the transport angular distribution.

  3. Improved numerical modeling of groundwater flow and transport at the MADE-2 site. Final report

    SciTech Connect

    Gray, D.D.; Rucker, D.F.

    1995-02-01

    Public domain computer programs were used to attempt an improved model of the tritium plume observed during Macrodispersion Experiment 2 (MADE-2), a field scale natural gradient experiment conducted at Columbus Air Force Base, Mississippi. The finite difference program MODFLOW was used to simulate the flow of groundwater through a 330 m x 105 m computational domain. Solutions for the 468 day experiment were obtained using a Sun Sparcstation 2 for several choices of convergence and storage parameters. The simulations had small mass balance errors and were consistent with continuous head observations. Tritium plume simulations used the mixed Lagrangian-Eulerian finite difference program MT3D to solve the contaminant transport equation using the MODFLOW-predicted flow field. Thirteen runs were made using various advection algorithms and dispersivities, but none was successful.

  4. Framework Application for Core Edge Transport Simulation (FACETS)

    SciTech Connect

    Krasheninnikov, Sergei; Pigarov, Alexander

    2011-10-15

    The FACETS (Framework Application for Core-Edge Transport Simulations) project of Scientific Discovery through Advanced Computing (SciDAC) Program was aimed at providing a high-fidelity whole-tokamak modeling for the U.S. magnetic fusion energy program and ITER through coupling separate components for each of the core region, edge region, and wall, with realistic plasma particles and power sources and turbulent transport simulation. The project also aimed at developing advanced numerical algorithms, efficient implicit coupling methods, and software tools utilizing the leadership class computing facilities under Advanced Scientific Computing Research (ASCR). The FACETS project was conducted by a multi-discipline, multi-institutional teams, the Lead PI was J.R. Cary (Tech-X Corp.). In the FACETS project, the Applied Plasma Theory Group at the MAE Department of UCSD developed the Wall and Plasma-Surface Interaction (WALLPSI) module, performed its validation against experimental data, and integrated it into the developed framework. WALLPSI is a one-dimensional, coarse grained, reaction/advection/diffusion code applied to each material boundary cell in the common modeling domain for a tokamak. It incorporates an advanced model for plasma particle transport and retention in the solid matter of plasma facing components, simulation of plasma heat power load handling, calculation of erosion/deposition, and simulation of synergistic effects in strong plasma-wall coupling.

  5. Advection-condensation of water vapor with coherent stirring: a stochastic approach

    NASA Astrophysics Data System (ADS)

    Tsang, Yue-Kin; Vanneste, Jacques; Vallis, Geoffrey

    2015-11-01

    The dynamics of atmospheric water is an essential ingredient of weather and climate. Water vapor, in particular, is an important greenhouse gas whose distribution has a strong impact on climate. To gain insight into the factors controlling the distribution of atmospheric moisture, we study an advection-condensation model in which water vapor is passively advected by a prescribed velocity and condensation acts as a sink that maintains the specific humidity below a prescribed, spatially dependent saturation value. The velocity consists of two parts: a single vortex representing large-scale coherent flow (e.g. the Hadley cell) and a white noise component mimicking small-scale turbulence. Steady-state is achieved in the presence of a moisture source at a boundary. We formulate this model as a set of stochastic differential equations. In the fast advection limit, analytical expression for the water vapor distribution is obtained by matched asymptotics. This allows us to make various predictions including the dependence of total precipitation on the vortex strength. These analytical results are verified by Monte Carlo simulations. This work is supported by the UK EPSRC Grant EP/I028072/1 and the Feasibility Fund from the UK EPSRC Network ReCoVER.

  6. Anisotropic Turbulent Advection of a Passive Vector Field: Effects of the Finite Correlation Time

    NASA Astrophysics Data System (ADS)

    Antonov, N. V.; Gulitskiy, N. M.

    2016-02-01

    The turbulent passive advection under the environment (velocity) field with finite correlation time is studied. Inertial-range asymptotic behavior of a vector (e.g., magnetic) field, passively advected by a strongly anisotropic turbulent flow, is investigated by means of the field theoretic renormalization group and the operator product expansion. The advecting velocity field is Gaussian, with finite correlation time and prescribed pair correlation function. The inertial-range behavior of the model is described by two regimes (the limits of vanishing or infinite correlation time) that correspond to nontrivial fixed points of the RG equations and depend on the relation between the exponents in the energy energy spectrum ɛ ∝ k⊥1-ξ and the dispersion law ω ∝ k⊥2-η . The corresponding anomalous exponents are associated with the critical dimensions of tensor composite operators built solely of the passive vector field itself. In contrast to the well-known isotropic Kraichnan model, where various correlation functions exhibit anomalous scaling behavior with infinite sets of anomalous exponents, here the dependence on the integral turbulence scale L has a logarithmic behavior: instead of power-like corrections to ordinary scaling, determined by naive (canonical) dimensions, the anomalies manifest themselves as polynomials of logarithms of L. Due to the presence of the anisotropy in the model, all multiloop diagrams are equal to zero, thus this result is exact.

  7. The effects of advection solvers on the performance of air quality models

    SciTech Connect

    Tanrikulu, S.; Odman, M.T.

    1996-12-31

    The available numerical solvers for the advection term in the chemical species conservation equation have different properties, and consequently introduce different types of errors. These errors can affect the performance of air quality models and lead to biases in model results. In this study, a large number of advection solvers have been studied and six of them were identified as having potential for use in photochemical models. The identified solvers were evaluated extensively using various numerical tests that are relevant to air quality simulations. Among the solvers evaluated, three of them showed better performance in terms of accuracy and some other characteristics such as conservation of mass and positivity. They are the solvers by Bott, Yuamartino, and Dabdub and Seinfeld. These three solvers were incorporated into the SARMAP Air Quality Model (SAQM) and the August 3-6, 1990 ozone episode in the San Joaquin Valley of California was simulated with each. A model performance analysis was conducted for each simulation using the rich air quality database of the 1990 San Joaquin Valley Air Quality Study. The results of the simulations were compared with each other and the effects of advection solvers on the performance of the model are discussed.

  8. Mass Transport within Soils

    SciTech Connect

    McKone, Thomas E.

    2009-03-01

    with three major horizons, the saturated zone can be further divided into other zones based on hydraulic and geologic conditions. Wetland soils are a special and important class in which near-saturation conditions exist most of the time. When a contaminant is added to or formed in a soil column, there are several mechanisms by which it can be dispersed, transported out of the soil column to other parts of the environment, destroyed, or transformed into some other species. Thus, to evaluate or manage any contaminant introduced to the soil column, one must determine whether and how that substance will (1) remain or accumulate within the soil column, (2) be transported by dispersion or advection within the soil column, (3) be physically, chemically, or biologically transformed within the soil (i.e., by hydrolysis, oxidation, etc.), or (4) be transported out of the soil column to another part of the environment through a cross-media transfer (i.e., volatilization, runoff, ground water infiltration, etc.). These competing processes impact the fate of physical, chemical, or biological contaminants found in soils. In order to capture these mechanisms in mass transfer models, we must develop mass-transfer coefficients (MTCs) specific to soil layers. That is the goal of this chapter. The reader is referred to other chapters in this Handbook that address related transport processes, namely Chapter 13 on bioturbation, Chapter 15 on transport in near-surface geological formations, and Chapter 17 on soil resuspention. This chapter addresses the following issues: the nature of soil pollution, composition of soil, transport processes and transport parameters in soil, transformation processes in soil, mass-balance models, and MTCs in soils. We show that to address vertical heterogeneity in soils in is necessary to define a characteristic scaling depth and use this to establish process-based expressions for soil MTCs. The scaling depth in soil and the corresponding MTCs depend strongly

  9. Coupling between geochemical reactions and multicomponent gas and solute transport in unsaturated media: A reactive transport modeling study

    NASA Astrophysics Data System (ADS)

    Molins, S.; Mayer, K. U.

    2007-05-01

    The two-way coupling that exists between biogeochemical reactions and vadose zone transport processes, in particular gas phase transport, determines the composition of soil gas. To explore these feedback processes quantitatively, multicomponent gas diffusion and advection are implemented into an existing reactive transport model that includes a full suite of geochemical reactions. Multicomponent gas diffusion is described on the basis of the dusty gas model, which accounts for all relevant gas diffusion mechanisms. The simulation of gas attenuation in partially saturated landfill soil covers, methane production, and oxidation in aquifers contaminated by organic compounds (e.g., an oil spill site) and pyrite oxidation in mine tailings demonstrate that both diffusive and advective gas transport can be affected by geochemical reactions. Methane oxidation in landfill covers reduces the existing upward pressure gradient, thereby decreasing the contribution of advective methane emissions to the atmosphere and enhancing the net flux of atmospheric oxygen into the soil column. At an oil spill site, methane oxidation causes a reversal in the direction of gas advection, which results in advective transport toward the zone of oxidation both from the ground surface and the deeper zone of methane production. Both diffusion and advection contribute to supply atmospheric oxygen into the subsurface, and methane emissions to the atmosphere are averted. During pyrite oxidation in mine tailings, pressure reduction in the reaction zone drives advective gas flow into the sediment column, enhancing the oxidation process. In carbonate-rich mine tailings, calcite dissolution releases carbon dioxide, which partly offsets the pressure reduction caused by O2 consumption.

  10. Technology and human purpose: the problem of solids transport on the Earth's surface

    NASA Astrophysics Data System (ADS)

    Haff, P. K.

    2012-11-01

    Displacement of mass of limited deformability ("solids") on the Earth's surface is opposed by friction and (the analog of) form resistance - impediments relaxed by rotational motion, self-powering of mass units, and transport infrastructure. These features of solids transport first evolved in the biosphere prior to the emergence of technology, allowing slope-independent, diffusion-like motion of discrete objects as massive as several tons, as illustrated by animal foraging and movement along game trails. However, high-energy-consumption technology powered by fossil fuels required a mechanism that could support fast advective transport of solids, i.e., long-distance, high-volume, high-speed, unidirectional, slope-independent transport across the land surface of materials like coal, containerized fluids, minerals, and economic goods. Pre-technology nature was able to sustain regional- and global-scale advection only in the limited form of piggybacking on geophysical flows of water (river sediment) and air (dust). The appearance of a mechanism for sustained advection of solids independent of fluid flows and gravity appeared only upon the emergence of human purpose. Purpose enables solids advection by, in effect, simulating a continuous potential gradient, otherwise lacking, between discrete and widely separated fossil-fuel energy sources and sinks. Invoking purpose as a mechanism in solids advection is an example of the need to import anthropic principles and concepts into the language and methodology of modern Earth system dynamics. As part of the emergence of a generalized solids advection mechanism, several additional transport requirements necessary to the function of modern large-scale technological systems were also satisfied. These include spatially accurate delivery of advected payload, targetability to essentially arbitrarily located destinations (such as cities), and independence of structure of advected payload from transport mechanism. The latter property

  11. Technology and human purpose: the problem of solids transport on the earth's surface

    NASA Astrophysics Data System (ADS)

    Haff, P. K.

    2012-05-01

    Displacement of mass of limited deformability ("solids") on the Earth's surface is opposed by friction and (the analog of) form resistance - impediments relaxed by rotational motion, self-powering of mass units, and transport infrastructure. These features of solids transport first evolved in the biosphere prior to the emergence of technology, allowing slope-independent, diffusion-like motion of discrete objects as massive as several tons, as illustrated by animal foraging and movement along game trails. However, high-energy-consumption technology powered by fossil fuels required a mechanism that could support advective transport of solids, i.e., long-distance, high-volume, high-speed, unidirectional, slope independent transport across the land surface of materials like coal, containerized fluids, and minerals. Pre-technology nature was able to sustain large-scale, long-distance solids advection only in the limited form of piggybacking on geophysical flows of water (river sediment) and air (dust). The appearance of a generalized mechanism for advection of solids independent of fluid flows and gravity appeared only upon the emergence of human purpose. Purpose enables solids advection by, in effect, enabling a simulated continuous potential gradient, otherwise lacking, between discrete and widely separated fossil-fuel energy sources and sinks. Invoking purpose as a mechanism in solids advection is an example of the need to import anthropic principles and concepts into the language and methodology of modern Earth system dynamics. As part of the emergence of a generalized solids advection mechanism, several additional transport requirements necessary to the function of modern large-scale technological systems were also satisfied. These include spatially accurate delivery of advected payload, targetability to essentially arbitrarily located destinations (such as cities), and independence of structure of advected payload from transport mechanism. The latter property

  12. Solution of the advection-dispersion equation in two dimensions by a finite-volume Eulerian-Lagrangian localized adjoint method

    USGS Publications Warehouse

    Healy, R.W.; Russell, T.F.

    1998-01-01

    We extend the finite-volume Eulerian-Lagrangian localized adjoint method (FVELLAM) for solution of the advection-dispersion equation to two dimensions. The method can conserve mass globally and is not limited by restrictions on the size of the grid Peclet or Courant number. Therefore, it is well suited for solution of advection-dominated ground-water solute transport problems. In test problem comparisons with standard finite differences, FVELLAM is able to attain accurate solutions on much coarser space and time grids. On fine grids, the accuracy of the two methods is comparable. A critical aspect of FVELLAM (and all other ELLAMs) is evaluation of the mass storage integral from the preceding time level. In FVELLAM this may be accomplished with either a forward or backtracking approach. The forward tracking approach conserves mass globally and is the preferred approach. The backtracking approach is less computationally intensive, but not globally mass conservative. Boundary terms are systematically represented as integrals in space and time which are evaluated by a common integration scheme in conjunction with forward tracking through time. Unlike the one-dimensional case, local mass conservation cannot be guaranteed, so slight oscillations in concentration can develop, particularly in the vicinity of inflow or outflow boundaries. Published by Elsevier Science Ltd.

  13. LIMS (Limb Infrared Monitor of the Stratosphere) observation of traveling planetary waves and potential vorticity advection in the stratosphere and mesosphere

    NASA Technical Reports Server (NTRS)

    Dunkerton, Timothy J.

    1991-01-01

    Eastward and westward traveling waves were observed by the Nimbus 7 Limb Infrared Monitor of the Stratosphere (LIMS) during the northern winter 1978-1979. Eastward waves were prevalent in early winter and were involved in a minor Canadian warming in December 1978. A large westward traveling wave, as described by previous authors, was observed in January 1979 during a series of minor warmings. By comparing these two events, it is shown that in both cases the superposition of traveling and quasi-stationary waves led to constructive interference that was responsible for the warmings. However, there was significant asymmetry between eastward and westward traveling components. A local Eulerian analysis of potential vorticity (PV) transport indicates that adiabatic, geostrophic advection by the resolvable scales of motion explains qualitatively (but not quantitatively) the observed potential vorticity tendencies in the LIMS Northern Hemisphere winter. In particular, calculated advection explains the eastward rotation of the main vortex, intrusion of low PV air into the polar cap, and formation of high PV filaments at the vortex periphery.

  14. Modeling transportation of efavirenz: inference on possibility of mixed modes of transportation and kinetic solubility.

    PubMed

    Nemaura, Tafireyi

    2015-01-01

    Understanding drug transportation mechanisms in the human body is of paramount importance in modeling Pharmacokinetic-Pharmacodynamic relationships. This work gives a novel general model of efavirenz transportation projections based on concentrations simulated from patients on a dose of 600 mg. The work puts forward a proposition that transportation can wholly be modeled by concentration and time in a uniform volumetric space. Furthermore, movement entities are used to inform the state of "kinetic solubility" of a solution. There is use of Ricker's model, and forms of the Hill's equation in modeling transportation. Characterization on the movement rates of solution particle are suggested in relation to advection rate of solution particle. At turning points on the transportation rate of solution particle vs. concentration curve, a suggestion of possibly change of dominance in the mode of transportation and saturation is made. There are four movement rates postulated at primary micro-level transportation, that are attributed to convection, diffusion [passive transportation (EI )] and energy dependent system transportation (ED ) in relation to advection. Furthermore, a new parameter is introduced which is defined as an advection rate constant of solution particle. It is postulated to be dependent on two rate constants of solution particle, that is a convection rate constant of solution particle and a saturable transportation rate constant of solution particle. At secondary micro-level transportation, the results show convection as sum of advection and saturable transportation. The kinetics of dissolution of efavirenz in the solution space is postulated. Relatively, a good level of kinetics of dissolution is projected in the concentration region 0 - 32.82 μg/ml. PMID:26106329

  15. Modeling transportation of efavirenz: inference on possibility of mixed modes of transportation and kinetic solubility

    PubMed Central

    Nemaura, Tafireyi

    2015-01-01

    Understanding drug transportation mechanisms in the human body is of paramount importance in modeling Pharmacokinetic-Pharmacodynamic relationships. This work gives a novel general model of efavirenz transportation projections based on concentrations simulated from patients on a dose of 600 mg. The work puts forward a proposition that transportation can wholly be modeled by concentration and time in a uniform volumetric space. Furthermore, movement entities are used to inform the state of “kinetic solubility” of a solution. There is use of Ricker's model, and forms of the Hill's equation in modeling transportation. Characterization on the movement rates of solution particle are suggested in relation to advection rate of solution particle. At turning points on the transportation rate of solution particle vs. concentration curve, a suggestion of possibly change of dominance in the mode of transportation and saturation is made. There are four movement rates postulated at primary micro-level transportation, that are attributed to convection, diffusion [passive transportation (EI)] and energy dependent system transportation (ED) in relation to advection. Furthermore, a new parameter is introduced which is defined as an advection rate constant of solution particle. It is postulated to be dependent on two rate constants of solution particle, that is a convection rate constant of solution particle and a saturable transportation rate constant of solution particle. At secondary micro-level transportation, the results show convection as sum of advection and saturable transportation. The kinetics of dissolution of efavirenz in the solution space is postulated. Relatively, a good level of kinetics of dissolution is projected in the concentration region 0 − 32.82 μg/ml. PMID:26106329

  16. A constrained transport scheme for MHD on unstructured static and moving meshes

    NASA Astrophysics Data System (ADS)

    Mocz, Philip; Vogelsberger, Mark; Hernquist, Lars

    2014-07-01

    Magnetic fields play an important role in many astrophysical systems and a detailed understanding of their impact on the gas dynamics requires robust numerical simulations. Here we present a new method to evolve the ideal magnetohydrodynamic (MHD) equations on unstructured static and moving meshes that preserves the magnetic field divergence-free constraint to machine precision. The method overcomes the major problems of using a cleaning scheme on the magnetic fields instead, which is non-conservative, not fully Galilean invariant, does not eliminate divergence errors completely, and may produce incorrect jumps across shocks. Our new method is a generalization of the constrained transport (CT) algorithm used to enforce the ∇ · B = 0 condition on fixed Cartesian grids. Preserving ∇ · B = 0 at the discretized level is necessary to maintain the orthogonality between the Lorentz force and B. The possibility of performing CT on a moving mesh provides several advantages over static mesh methods due to the quasi-Lagrangian nature of the former (i.e. the mesh generating points move with the flow), such as making the simulation automatically adaptive and significantly reducing advection errors. Our method preserves magnetic fields and fluid quantities in pure advection exactly.

  17. Variability of Sub-Canopy Flow, Temperature, and Horizontal Advection in Moderately Complex Terrain

    NASA Astrophysics Data System (ADS)

    Thomas, Christoph K.

    2011-04-01

    We examine the space-time structure of the wind and temperature fields, as well as that of the resulting spatial temperature gradients and horizontal advection of sensible heat, in the sub-canopy of a forest with a dense overstorey in moderately complex terrain. Data were collected from a sensor network consisting of ten stations and subject to orthogonal decomposition using the multiresolution basis set and stochastic analyses including two-point correlations, dimensional structure functions, and various other bulk measures for space and time variability. Despite some similarities, fundamental differences were found in the space-time structure of the motions dominating the variability of the sub-canopy wind and temperature fields. The dominating motions occupy similar spatial, but different temporal, scales. A conceptual space-time diagram was constructed based on the stochastic analysis that includes the important end members of the spatial and temporal scales of the observed motions of both variables. Short-lived and small-scale motions govern the variability of the wind, while the diurnal temperature oscillation driven by the surface radiative transfer is the main determinant of the variability in the temperature signal, which occupies much larger time scales. This scale mismatch renders Taylor's hypothesis for sub-canopy flow invalid and aggravates the computation of meaningful estimates of horizontal advective fluxes without dense spatial information. It may further explain the ambiguous and inconclusive results reported in numerous energy and mass balance and advection studies evaluating the hypothesis that accounting for budget components other than the change in storage term and the vertical turbulent flux improves the budget closure when turbulent diffusion is suppressed in plant canopies. Estimates of spatial temperature gradients and advective fluxes were sensitive to the network geometry and the spatial interpolation method. The assumption of linear

  18. Modeling flow and solute transport in irrigation furrows

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper presents an internally coupled flow and solute transport model for free-draining irrigation furrows. Furrow hydraulics is simulated with a numerical zero-inertia model and solute transport is computed with a model based on a numerical solution of the cross-section averaged advection-dispe...

  19. Volcanic aerosol optical properties and phase partitioning behavior after long-range advection characterized by UV-Lidar measurements

    NASA Astrophysics Data System (ADS)

    Miffre, A.; David, G.; Thomas, B.; Rairoux, P.; Fjaeraa, A. M.; Kristiansen, N. I.; Stohl, A.

    2012-03-01

    In this paper, an UV-polarization Lidar is used to study the optical properties of volcanic aerosol in the troposphere. The particles were released by the mid-April 2010 eruption of the Eyjafjallajökull volcano (63.63°N, 19.62°W, Iceland) and passed in the troposphere above Lyon (45.76°N, 4.83°E, France) after advection over 2600 km. The FLEXPART particle dispersion model was applied to simulate the volcanic ash transport from Iceland to South West Europe, at the border of the air traffic closure area. Time-altitude plots of FLEXPART ash concentrations as well as of aerosol backscattering are presented, showing the arrival of volcanic particles in the troposphere above Lyon and their mixing into the planetary boundary layer. The particle UV-backscattering coefficient was typically 4 Mm -1 sr -1 and highly sensitive and accurate particle UV-depolarization measurements were performed, with depolarization ranging from a few to 44%. After few days long-range transport, observed ash particles are still non spherical. The observed variations of the backscattering and depolarization coefficients can be attributed to variations in the volcanic particles content. Ash mass concentrations are then retrieved. Moreover, a partitioning into spherical and non spherical particles is evaluated from number concentration ratios between solid ash particles and spherical hydrated sulfate particles. The microphysical properties of volcanic particles can thus be studied by associating an UV-polarization remote sensing instrument with a numerical volcanic ash dispersion model.

  20. Heat Flow, Climate Change and Advective Heat Transfer Beneath Winnipeg, Canada

    NASA Astrophysics Data System (ADS)

    Ferguson, G. A.; Woodbury, A. D.

    2002-12-01

    appear to have the greatest impacts in an industrial area in eastern Winnipeg and in an area with several large apartment buildings in western Winnipeg where the largest volumes of warm water are injected. Temperature profiles in areas where anomalous advective heat flow is prevalent are characterized by elevated temperatures occurring over discrete intervals, indicating transport through fractures and paleokarst features in the Upper Carbonate Aquifer. The presence of elevated temperatures beneath Winnipeg indicate that the current practices of using groundwater for cooling may not be sustainable due to the current injections of warm water and basement construction. However, the increases in heat flow beneath Winnipeg make the use of geothermal energy by heat pumps an attractive alternative for space heating.

  1. Laboratory transport experiments with antibiotic sulfadiazine: Experimental results and parameter uncertainty analysis

    NASA Astrophysics Data System (ADS)

    Sittig, S.; Vrugt, J. A.; Kasteel, R.; Groeneweg, J.; Vereecken, H.

    2011-12-01

    Persistent antibiotics in the soil potentially contaminate the groundwater and affect the quality of drinking water. To improve our understanding of antibiotic transport in soils, we performed laboratory transport experiments in soil columns under constant irrigation conditions with repeated applications of chloride and radio-labeled SDZ. The tracers were incorporated in the first centimeter, either with pig manure or with solution. Breakthrough curves and concentration profiles of the parent compound and the main transformation products were measured. The goal is to describe the observed nonlinear and kinetic transport behavior of SDZ. Our analysis starts with synthetic transport data for the given laboratory flow conditions for tracers which exhibit increasingly complex interactions with the solid phase. This first step is necessary to benchmark our inverse modeling approach for ideal situations. Then we analyze the transport behavior using the column experiments in the laboratory. Our analysis uses a Markov chain Monte Carlo sampler (Differential Evolution Adaptive Metropolis algorithm, DREAM) to efficiently search the parameter space of an advective-dispersion model. Sorption of the antibiotics to the soil was described using a model regarding reversible as well as irreversible sorption. This presentation will discuss our initial findings. We will present the data of our laboratory experiments along with an analysis of parameter uncertainty.

  2. A Hybrid Parallel Preconditioning Algorithm For CFD

    NASA Technical Reports Server (NTRS)

    Barth,Timothy J.; Tang, Wei-Pai; Kwak, Dochan (Technical Monitor)

    1995-01-01

    A new hybrid preconditioning algorithm will be presented which combines the favorable attributes of incomplete lower-upper (ILU) factorization with the favorable attributes of the approximate inverse method recently advocated by numerous researchers. The quality of the preconditioner is adjustable and can be increased at the cost of additional computation while at the same time the storage required is roughly constant and approximately equal to the storage required for the original matrix. In addition, the preconditioning algorithm suggests an efficient and natural parallel implementation with reduced communication. Sample calculations will be presented for the numerical solution of multi-dimensional advection-diffusion equations. The matrix solver has also been embedded into a Newton algorithm for solving the nonlinear Euler and Navier-Stokes equations governing compressible flow. The full paper will show numerous examples in CFD to demonstrate the efficiency and robustness of the method.

  3. Correlated signals and causal transport in ocean circulation

    NASA Astrophysics Data System (ADS)

    Jeffress, Stephen

    2014-05-01

    This paper presents a framework for interpreting the time-lagged correlation of oceanographic data in terms of physical transport mechanisms. Previous studies have inferred aspects of ocean circulation by correlating fluctuations in temperature and salinity measurements at distant stations. Typically, the time-lag of greatest correlation is interpreted as an advective transit time and hence the advective speed of the current. In this paper we relate correlation functions directly to the underlying equations of fluid transport. This is accomplished by expressing the correlation functions in terms of the Green's function of the transport equation. Two types of correlation functions are distinguished: field-forcing correlation and field-field correlation. Their unique relationships to the Green's function are illustrated in two idealized models of geophysical transport: a leaky pipe model and an advective-diffusive model. Both models show that the field-forcing correlation function converges to the Green's function as the characteristic (time or length) scale of forcing autocorrelation decreases. The leaky pipe model provides an explanation for why advective speeds inferred from time-lagged correlations are often less than the speed of the main current. The advective-diffusive model reveals a structural bias in the field-field correlation function when used to estimate transit times.

  4. AN ALGORITHM FOR RADIATION MAGNETOHYDRODYNAMICS BASED ON SOLVING THE TIME-DEPENDENT TRANSFER EQUATION

    SciTech Connect

    Jiang, Yan-Fei; Stone, James M.; Davis, Shane W.

    2014-07-01

    We describe a new algorithm for solving the coupled frequency-integrated transfer equation and the equations of magnetohydrodynamics in the regime that light-crossing time is only marginally shorter than dynamical timescales. The transfer equation is solved in the mixed frame, including velocity-dependent source terms accurate to O(v/c). An operator split approach is used to compute the specific intensity along discrete rays, with upwind monotonic interpolation used along each ray to update the transport terms, and implicit methods used to compute the scattering and absorption source terms. Conservative differencing is used for the transport terms, which ensures the specific intensity (as well as energy and momentum) are conserved along each ray to round-off error. The use of implicit methods for the source terms ensures the method is stable even if the source terms are very stiff. To couple the solution of the transfer equation to the MHD algorithms in the ATHENA code, we perform direct quadrature of the specific intensity over angles to compute the energy and momentum source terms. We present the results of a variety of tests of the method, such as calculating the structure of a non-LTE atmosphere, an advective diffusion test, linear wave convergence tests, and the well-known shadow test. We use new semi-analytic solutions for radiation modified shocks to demonstrate the ability of our algorithm to capture the effects of an anisotropic radiation field accurately. Since the method uses explicit differencing of the spatial operators, it shows excellent weak scaling on parallel computers.

  5. CO2 transport over complex terrain

    USGS Publications Warehouse

    Sun, Jielun; Burns, Sean P.; Delany, A.C.; Oncley, S.P.; Turnipseed, A.A.; Stephens, B.B.; Lenschow, D.H.; LeMone, M.A.; Monson, Russell K.; Anderson, D.E.

    2007-01-01

    CO2 transport processes relevant for estimating net ecosystem exchange (NEE) at the Niwot Ridge AmeriFlux site in the front range of the Rocky Mountains, Colorado, USA, were investigated during a pilot experiment. We found that cold, moist, and CO2-rich air was transported downslope at night and upslope in the early morning at this forest site situated on a ???5% east-facing slope. We found that CO2 advection dominated the total CO2 transport in the NEE estimate at night although there are large uncertainties because of partial cancellation of horizontal and vertical advection. The horizontal CO2 advection captured not only the CO2 loss at night, but also the CO2 uptake during daytime. We found that horizontal CO2 advection was significant even during daytime especially when turbulent mixing was not significant, such as in early morning and evening transition periods and within the canopy. Similar processes can occur anywhere regardless of whether flow is generated by orography, synoptic pressure gradients, or surface heterogeneity as long as CO2 concentration is not well mixed by turbulence. The long-term net effect of all the CO2 budget terms on estimates of NEE needs to be investigated. ?? 2007 Elsevier B.V. All rights reserved.

  6. Phase mixing versus nonlinear advection in drift-kinetic plasma turbulence

    NASA Astrophysics Data System (ADS)

    Schekochihin, A. A.; Parker, J. T.; Highcock, E. G.; Dellar, P. J.; Dorland, W.; Hammett, G. W.

    2016-04-01

    > A scaling theory of long-wavelength electrostatic turbulence in a magnetised, weakly collisional plasma (e.g. drift-wave turbulence driven by ion temperature gradients) is proposed, with account taken both of the nonlinear advection of the perturbed particle distribution by fluctuating flows and of its phase mixing, which is caused by the streaming of the particles along the mean magnetic field and, in a linear problem, would lead to Landau damping. It is found that it is possible to construct a consistent theory in which very little free energy leaks into high velocity moments of the distribution function, rendering the turbulent cascade in the energetically relevant part of the wavenumber space essentially fluid-like. The velocity-space spectra of free energy expressed in terms of Hermite-moment orders are steep power laws and so the free-energy content of the phase space does not diverge at infinitesimal collisionality (while it does for a linear problem); collisional heating due to long-wavelength perturbations vanishes in this limit (also in contrast with the linear problem, in which it occurs at the finite rate equal to the Landau damping rate). The ability of the free energy to stay in the low velocity moments of the distribution function is facilitated by the `anti-phase-mixing' effect, whose presence in the nonlinear system is due to the stochastic version of the plasma echo (the advecting velocity couples the phase-mixing and anti-phase-mixing perturbations). The partitioning of the wavenumber space between the (energetically dominant) region where this is the case and the region where linear phase mixing wins its competition with nonlinear advection is governed by the `critical balance' between linear and nonlinear time scales (which for high Hermite moments splits into two thresholds, one demarcating the wavenumber region where phase mixing predominates, the other where plasma echo does).

  7. Permeability generation and resetting of tracers during metamorphic fluid flow: implications for advection-dispersion models

    NASA Astrophysics Data System (ADS)

    Cartwright, Ian

    Advection-dispersion fluid flow models implicitly assume that the infiltrating fluid flows through an already fluid-saturated medium. However, whether rocks contain a fluid depends on their reaction history, and whether any initial fluid escapes. The behaviour of different rocks may be illustrated using hypothetical marble compositions. Marbles with diverse chemistries (e.g. calcite + dolomite + quartz) are relatively reactive, and will generally produce a fluid during heating. By contrast, marbles with more restricted chemistries (e.g. calcite + quartz or calcite-only) may not. If the rock is not fluid bearing when fluid infiltration commences, mineralogical reactions may produce a reaction-enhanced permeability in calcite + dolomite + quartz or calcite + quartz, but not in calcite-only marbles. The permeability production controls the pattern of mineralogical, isotopic, and geochemical resetting during fluid flow. Tracers retarded behind the mineralogical fronts will probably be reset as predicted by the advection-dispersion models; however, tracers that are expected to be reset ahead of the mineralogical fronts cannot progress beyond the permeability generating reaction. In the case of very unreactive lithologies (e.g. pure calcite marbles, cherts, and quartzites), the first reaction to affect the rocks may be a metasomatic one ahead of which there is little pervasive resetting of any tracer. Centimetre-scale layering may lead to the formation of self-perpetuating fluid channels in rocks that are not fluid saturated due to the juxtaposition of reactants. Such layered rocks may show patterns of mineralogical resetting that are not predicted by advection-dispersion models. Patterns of mineralogical and isotopic resetting in marbles from a number of terrains, for example: Chillagoe, Marulan South, Reynolds Range (Australia); Adirondack Mountains, Old Woman Mountains, Notch Peak (USA); and Stephen Cross Quarry (Canada) vary as predicted by these models.

  8. Measurements of Horizontal Advection of Carbon Dioxide Within a Forest Canopy

    NASA Astrophysics Data System (ADS)

    Schroeder, M.; Falk, M.; Paw U, K.

    2002-12-01

    We present methodology, data and analysis on the horizontal advection of Carbon Dioxide within the understory at the Wind River Canopy Crane AMERIFLUX site. The Crane is located in a Pacific Northwest Old-growth Forest with trees up to 500 years old and 65 meters tall. The forest structure is complex with seven gymnosperm and two angiosperm tree species in the 2.3 ha crane circle, large amounts of woody debris on the forest floor, and a diverse understory. Data presented was collected using a 3-dimensional CO2/H2O profile system using LiCor LI6262 and LI7000 closed-path InfraRed Gas Analyzers (IRGA) with a total of 15 intakes distributed on the tower and throughout the canopy. Additional data was acquired using permanent eddy covariance stations consisting of a Gill-Solent HS Research sonic anemometer and a LiCor LI6262 IRGA, which have been operated for over 4 years at a height of 2.5 meters to complement an identical system measuring total ecosystem exchange at a height of 70 meters. Supplementary micro-meteorological data was collected by a vertical profile of 8 stations. Advection of Carbon Dioxide was calculated using horizontal concentration differences and mean wind speed and direction for half-hour periods. The Net ecosystem carbon exchange (NEE) estimated by eddy-covariance ranges from a sink of 1.9 tC ha-1 yr-1 to a source of 0.5 tC ha-1 yr-1. The long-term understory eddy covariance data indicate the release of carbon from the soil to be as large as 11 tC ha-1 yr-1 with maximum values of 6 to 8 \\mu mol m-1 s-1. Preliminary data show that advection can account for 20% of Carbon Dioxide fluxes measured by eddy covariance.

  9. Maximum Principles and Application to the Analysis of An Explicit Time Marching Algorithm

    NASA Technical Reports Server (NTRS)

    LeTallec, Patrick; Tidriri, Moulay D.

    1996-01-01

    In this paper we develop local and global estimates for the solution of convection-diffusion problems. We then study the convergence properties of a Time Marching Algorithm solving Advection-Diffusion problems on two domains using incompatible discretizations. This study is based on a De-Giorgi-Nash maximum principle.

  10. Observations and Modeling the Advection of Carbon from an Inland Lake Surrounded By a Forest

    NASA Astrophysics Data System (ADS)

    Bohrer, G.; Morin, T. H.; Kenny, W.; Vogel, C. S.

    2014-12-01

    Lake Douglas is a small inland lake in Northern Michigan, surrounded by the forest of the University of Michigan Biological Station (UMBS). Over a decade of eddy-covariance measurements of carbon fluxes at the UMBS provide us good knowledge of the rates and dynamics of fluxes between the forest and the atmosphere. However, there is very little knowledge about the flux rates from the near-by lake and how they relate to the conditions in the surrounding forest. We have conducted eddy-covariance measurements of CO2 fluxes from the lake over two summers. We found the microclimate predictably different over the lake. Carbon uptake rates by the lake ecosystem were high during the daytime, but lower than the adjacent forest, which led to higher atmospheric CO2 concentrations over the lake surface than over the forest. Using concurrent wind and CO2 concentration data from the lake and two flux towers in the forest we estimated the rate of lateral advection of CO2 from the lake to the forest. Though the lake is almost never within the forest flux tower footprint, this advection term may bias forest carbon budget estimates. To further study this advection, we generated a virtual experiment using a high resolution canopy-resolving large eddy simulation model (RAFLES). We assumed a circular lake surrounded by a homogeneous forest and prescribed typical conditions representing different times of day during the summer growing season. The observed latent and sensible heat flux rates at the forest and lake tower where prescribed to the simulated forest and lake patches in the simulation, respectively. The resolved wind field includes the effects of the different surface heat fluxes, as well as the roughness transition caused by the trees at the water edge. We used this wind field in a series of simulations using Hi-VACC, a scalar diffusion-advection model. In these Hi-VACC simulations we assumed the observed carbon flux rates as surface sinks for CO2 at the two patch types. The

  11. Variational integration for ideal magnetohydrodynamics with built-in advection equations

    SciTech Connect

    Zhou, Yao; Burby, J. W.; Bhattacharjee, A.; Qin, Hong

    2014-10-15

    Newcomb's Lagrangian for ideal magnetohydrodynamics (MHD) in Lagrangian labeling is discretized using discrete exterior calculus. Variational integrators for ideal MHD are derived thereafter. Besides being symplectic and momentum-preserving, the schemes inherit built-in advection equations from Newcomb's formulation, and therefore avoid solving them and the accompanying error and dissipation. We implement the method in 2D and show that numerical reconnection does not take place when singular current sheets are present. We then apply it to studying the dynamics of the ideal coalescence instability with multiple islands. The relaxed equilibrium state with embedded current sheets is obtained numerically.

  12. Preconditioned iterative methods for space-time fractional advection-diffusion equations

    NASA Astrophysics Data System (ADS)

    Zhao, Zhi; Jin, Xiao-Qing; Lin, Matthew M.

    2016-08-01

    In this paper, we propose practical numerical methods for solving a class of initial-boundary value problems of space-time fractional advection-diffusion equations. First, we propose an implicit method based on two-sided Grünwald formulae and discuss its stability and consistency. Then, we develop the preconditioned generalized minimal residual (preconditioned GMRES) method and preconditioned conjugate gradient normal residual (preconditioned CGNR) method with easily constructed preconditioners. Importantly, because resulting systems are Toeplitz-like, fast Fourier transform can be applied to significantly reduce the computational cost. We perform numerical experiments to demonstrate the efficiency of our preconditioners, even in cases with variable coefficients.

  13. A field study of air flow and turbulent features of advection fog

    NASA Technical Reports Server (NTRS)

    Connell, J. D.

    1979-01-01

    The setup and initial operation of a set of specialized meteorological data collection hardware are described. To study the life cycle of advection fogs at a lake test site, turbulence levels in the fog are identified, and correlated with the temperature gradients and mean wind profiles. A meteorological tower was instrumented to allow multiple-level measurements of wind and temperature on a continuous basis. Additional instrumentation was: (1)hydrothermograph, (2)microbarograph, (3)transmissometers, and (4)a boundary layer profiler. Two types of fogs were identified, and important differences in the turbulence scales were noted.

  14. Hygroscopic chemicals and the formation of advection warm fog: A numerical simulation

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Liaw, G. S.

    1978-01-01

    The formation of advection fog is closely associated with the characteristics of the aerosol particles, including the chemical composition, mass of the nuclei, particle size, and concentration. Both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution.

  15. Variational Integration for Ideal MHD with Built-in Advection Equations

    SciTech Connect

    Zhou, Yao; Qin, Hong; Burby, J. W.; Bhattacharjee, A.

    2014-08-05

    Newcomb's Lagrangian for ideal MHD in Lagrangian labeling is discretized using discrete exterior calculus. Variational integrators for ideal MHD are derived thereafter. Besides being symplectic and momentum preserving, the schemes inherit built-in advection equations from Newcomb's formulation, and therefore avoid solving them and the accompanying error and dissipation. We implement the method in 2D and show that numerical reconnection does not take place when singular current sheets are present. We then apply it to studying the dynamics of the ideal coalescence instability with multiple islands. The relaxed equilibrium state with embedded current sheets is obtained numerically.

  16. Turbulent ExB advection of charged test particles with large gyroradii

    SciTech Connect

    Hauff, T.; Jenko, F.

    2006-10-15

    The turbulent ExB advection of charged test particles with large gyroradii is investigated. To this aim, a recently developed theory--the so-called decorrelation trajectory method--is used together with direct numerical simulations and analytical calculations. It is found that for Kubo numbers larger than about unity, the particle diffusivity is almost independent of the gyroradius as long as the latter does not exceed the correlation length of the electrostatic potential. The underlying physical mechanisms leading to this surprising and initially counterintuitive behavior are identified.

  17. Covariance Propagation and Partial Eigendecomposition Filtering on the Continuum: The Cases of Advective Dynamics

    NASA Technical Reports Server (NTRS)

    Cohn, S.

    2002-01-01

    As a motivation for this lecture, we begin by stating a paradox that challenges our fundamental understanding of covariance evolution (at least it challenged my own). Attempting to resolve this 'divergence paradox' leads us to introduce the continuum fundamental solution operator for the dynamics under consideration, which will be advection dynamics in this lecture. This operator is the object that is approximated by the discrete 'tangent linear model. We then show how the fundamental solution operator can be used to describe the solution of the continuum covariance evolution equation. This description is complete enough to resolve fully the divergence paradox.

  18. Estimation of aerosol radiative forcing over an aged-background aerosol feature during advection and non-advection events using a ground-based data obtained from a Prede Skyradiometer observation

    NASA Astrophysics Data System (ADS)

    Ningombam, Shantikumar S.; Bagare, S. P.; Khatri, P.; Sohn, B. J.; Song, H.-J.

    2015-10-01

    Estimation of aerosol radiative forcing (ARF) was performed using a radiative transfer model (Rstar6b) along with physical and optical parameters of aerosols obtained from sky radiometer observation over Indian Astronomical Observatory (IAO), Hanle, Ladakh, during 2008-2010 from dust, anthropogenic, and aged background observing conditions. ARF was estimated at the top of the atmosphere (TOA), in the atmosphere, and at the surface during the three observing conditions. During dust and anthropogenic events, average aerosol optical depth (AOD at 500 nm) went up to 0.24 from the aged background observing condition 0.04. Such enhancement of AOD is associated by the combination of desert-dust and anthropogenic aerosols transported from distant sources as noticed from Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observatio