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Sample records for advective transport model

  1. Pathways for Advective Transport

    DTIC Science & Technology

    2001-01-19

    the approach is given and an application to the Gulf of Mexico is described where the analysis precisely identifies the boundaries of coherent vortical structures as well as pathways for advective transport.

  2. A mass-conserving advection scheme for offline simulation of scalar transport in coastal ocean models

    NASA Astrophysics Data System (ADS)

    Gillibrand, P. A.; Herzfeld, M.

    2016-05-01

    We present a flux-form semi-Lagrangian (FFSL) advection scheme designed for offline scalar transport simulation with coastal ocean models using curvilinear horizontal coordinates. The scheme conserves mass, overcoming problems of mass conservation typically experienced with offline transport models, and permits long time steps (relative to the Courant number) to be used by the offline model. These attributes make the method attractive for offline simulation of tracers in biogeochemical or sediment transport models using archived flow fields from hydrodynamic models. We describe the FFSL scheme, and test it on two idealised domains and one real domain, the Great Barrier Reef in Australia. For comparison, we also include simulations using a traditional semi-Lagrangian advection scheme for the offline simulations. We compare tracer distributions predicted by the offline FFSL transport scheme with those predicted by the original hydrodynamic model, assess the conservation of mass in all cases and contrast the computational efficiency of the schemes. We find that the FFSL scheme produced very good agreement with the distributions of tracer predicted by the hydrodynamic model, and conserved mass with an error of a fraction of one percent. In terms of computational speed, the FFSL scheme was comparable with the semi-Lagrangian method and an order of magnitude faster than the full hydrodynamic model, even when the latter ran in parallel on multiple cores. The FFSL scheme presented here therefore offers a viable mass-conserving and computationally-efficient alternative to traditional semi-Lagrangian schemes for offline scalar transport simulation in coastal models.

  3. An advection-diffusion model for cross-field runaway electron transport in perturbed magnetic fields

    NASA Astrophysics Data System (ADS)

    Särkimäki, Konsta; Hirvijoki, Eero; Decker, Joan; Varje, Jari; Kurki-Suonio, Taina

    2016-12-01

    Disruption-generated runaway electrons (RE) present an outstanding issue for ITER. The predictive computational studies of RE generation rely on orbit-averaged computations and, as such, they lack the effects from the magnetic field stochasticity. Since stochasticity is naturally present in post-disruption plasma, and externally induced stochastization offers a prominent mechanism to mitigate RE avalanche, we present an advection-diffusion model that can be used to couple an orbit-following code to an orbit-averaged tool in order to capture the cross-field transport and to overcome the latter’s limitation. The transport coefficients are evaluated via a Monte Carlo method. We show that the diffusion coefficient differs significantly from the well-known Rechester-Rosenbluth result. We also demonstrate the importance of including the advection: it has a two-fold role both in modelling transport barriers created by magnetic islands and in amplifying losses in regions where the islands are not present.

  4. A subordinated advection model for uniform bed load transport from local to regional scales

    NASA Astrophysics Data System (ADS)

    Zhang, Yong; Martin, Raleigh L.; Chen, Dong; Baeumer, Boris; Sun, Hongguang; Chen, Li

    2014-12-01

    Sediment tracers moving as bed load can exhibit anomalous dispersion behavior deviating from Fickian diffusion. The presence of heavy-tailed resting time distributions and thin-tailed step length distributions motivate adoption of fractional-derivative models (FDMs) to describe sediment dispersion, but these models require many parameters that are difficult to quantify. Here we propose a considerably simplified FDM for anomalous transport of uniformly sized grains along straight channels, the subordinated advection equation (SAE), which is based on the concept of time subordination. Unlike previous FDM models with time index γ between 0 and 1, our SAE model adopts a value of γ between 1 and 2. This γ describes random velocities deviating significantly from the mean velocity and models both long resting periods and relatively fast displacements. We show that the model quantifies the dynamics of four bed load transport experiments recorded in the literature. In addition to γ, SAE model parameters—velocity and capacity coefficient—are related to the mean and variance of particle velocities, respectively. Successful application of the SAE model also implies a universal probability density for the heavy-tailed waiting time distribution (with finite mean) and a relatively lighter tailed step length distribution for uniform bed load transport from local to regional scales.

  5. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems

    NASA Astrophysics Data System (ADS)

    Li, Zhen; Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-07-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the conventional DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers.

  6. Transport dissipative particle dynamics model for mesoscopic advection-diffusion-reaction problems

    PubMed Central

    Yazdani, Alireza; Tartakovsky, Alexandre; Karniadakis, George Em

    2015-01-01

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic dissipative particle dynamics (DPD) framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between tDPD particles, and the advection is implicitly considered by the movements of these Lagrangian particles. An analytical formula is proposed to relate the tDPD parameters to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the conventional DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers. PMID:26156459

  7. Transport and Recruitment of Blue Crab Larvae:a Model with Advection and Mortality

    NASA Astrophysics Data System (ADS)

    Garvine, R. W.; Epifanio, C. E.; Epifanio, C. C.; Wong, K.-C.

    1997-07-01

    The present paper develops a mathematical model for the transport and recruitment of blue crab (Callinectes sapidus) larvae, and applies it to the inner continental shelf of the Middle Atlantic Bight near Delaware Bay, U.S.A. Blue crab larvae develop through seven or eight planktonic zoeal stages to a megalopa stage suitable for recruitment to adult populations of east coast estuaries. The larvae are concentrated near the surface, and the currents are primarily forced by alongshelf winds and river discharge through major estuaries. Model currents are prescribed based on a realistic synthesis of their observed relationship to wind and river discharge. Besides the resulting advection, particle diffusion and biological mortality are added to determine the fate of larvae released from their parent estuary. Groups of particles were released across the source region of the outflowing buoyancy-driven current in the model estuary mouth. Most larvae were swept alongshelf to the south with the buoyancy-driven coastal current, and thus were lost as recruits to the population of their parent estuary. However, some larvae released close to the seaward edge of the emerging coastal current were able to cross the coastal current front and move seaward into inner shelf water during upwelling-favorable (northward) wind events. Some of these, in turn, were suitably placed near the parent estuary mouth so that they could be advected landward as megalopae into the estuary during a subsequent downwelling-favorable (southward) wind event and thus join the adult population. The model results for megalopae returns were computed from consecutive daily release of 1000 particles, and were compared with 4 years of blue crab megalopa settlement data for Delaware Bay. The model results for 1989 and 1990 matched the observed data remarkably well, with both years showing dominance by a single return event of a few days duration. For 1991 and 1992, the observed results showed multiple return events

  8. Transport dissipative particle dynamics model for mesoscopic advection- diffusion-reaction problems

    SciTech Connect

    Zhen, Li; Yazdani, Alireza; Tartakovsky, Alexandre M.; Karniadakis, George E.

    2015-07-07

    We present a transport dissipative particle dynamics (tDPD) model for simulating mesoscopic problems involving advection-diffusion-reaction (ADR) processes, along with a methodology for implementation of the correct Dirichlet and Neumann boundary conditions in tDPD simulations. tDPD is an extension of the classic DPD framework with extra variables for describing the evolution of concentration fields. The transport of concentration is modeled by a Fickian flux and a random flux between particles, and an analytical formula is proposed to relate the mesoscopic concentration friction to the effective diffusion coefficient. To validate the present tDPD model and the boundary conditions, we perform three tDPD simulations of one-dimensional diffusion with different boundary conditions, and the results show excellent agreement with the theoretical solutions. We also performed two-dimensional simulations of ADR systems and the tDPD simulations agree well with the results obtained by the spectral element method. Finally, we present an application of the tDPD model to the dynamic process of blood coagulation involving 25 reacting species in order to demonstrate the potential of tDPD in simulating biological dynamics at the mesoscale. We find that the tDPD solution of this comprehensive 25-species coagulation model is only twice as computationally expensive as the DPD simulation of the hydrodynamics only, which is a significant advantage over available continuum solvers.

  9. The predictability of advection-dominated flux-transport solar dynamo models

    SciTech Connect

    Sanchez, Sabrina; Fournier, Alexandre; Aubert, Julien

    2014-01-20

    Space weather is a matter of practical importance in our modern society. Predictions of forecoming solar cycles mean amplitude and duration are currently being made based on flux-transport numerical models of the solar dynamo. Interested in the forecast horizon of such studies, we quantify the predictability window of a representative, advection-dominated, flux-transport dynamo model by investigating its sensitivity to initial conditions and control parameters through a perturbation analysis. We measure the rate associated with the exponential growth of an initial perturbation of the model trajectory, which yields a characteristic timescale known as the e-folding time τ {sub e}. The e-folding time is shown to decrease with the strength of the α-effect, and to increase with the magnitude of the imposed meridional circulation. Comparing the e-folding time with the solar cycle periodicity, we obtain an average estimate for τ {sub e} equal to 2.76 solar cycle durations. From a practical point of view, the perturbations analyzed in this work can be interpreted as uncertainties affecting either the observations or the physical model itself. After reviewing these, we discuss their implications for solar cycle prediction.

  10. Two-dimensional atmospheric transport and chemistry model - Numerical experiments with a new advection algorithm

    NASA Technical Reports Server (NTRS)

    Shia, Run-Lie; Ha, Yuk Lung; Wen, Jun-Shan; Yung, Yuk L.

    1990-01-01

    Extensive testing of the advective scheme proposed by Prather (1986) has been carried out in support of the California Institute of Technology-Jet Propulsion Laboratory two-dimensional model of the middle atmosphere. The original scheme is generalized to include higher-order moments. In addition, it is shown how well the scheme works in the presence of chemistry as well as eddy diffusion. Six types of numerical experiments including simple clock motion and pure advection in two dimensions have been investigated in detail. By comparison with analytic solutions, it is shown that the new algorithm can faithfully preserve concentration profiles, has essentially no numerical diffusion, and is superior to a typical fourth-order finite difference scheme.

  11. High-resolution two dimensional advective transport

    USGS Publications Warehouse

    Smith, P.E.; Larock, B.E.

    1989-01-01

    The paper describes a two-dimensional high-resolution scheme for advective transport that is based on a Eulerian-Lagrangian method with a flux limiter. The scheme is applied to the problem of pure-advection of a rotated Gaussian hill and shown to preserve the monotonicity property of the governing conservation law.

  12. HEMP advection model

    SciTech Connect

    Sharp, R.W. Jr.; Barton, R.T.

    1981-01-21

    A continuous rezoning procedure has been implemented in the computational cycle of a version of the HEMP two-dimensional, Lagrange, fluid dynamics code. The rezoning problem is divided into two steps. The first step requires the solving of ordinary Lagrange equations of motion; the second step consists of adding equipotential grid relaxation along with an advective remapping scheme.

  13. Efficient mass transport by optical advection

    PubMed Central

    Kajorndejnukul, Veerachart; Sukhov, Sergey; Dogariu, Aristide

    2015-01-01

    Advection is critical for efficient mass transport. For instance, bare diffusion cannot explain the spatial and temporal scales of some of the cellular processes. The regulation of intracellular functions is strongly influenced by the transport of mass at low Reynolds numbers where viscous drag dominates inertia. Mimicking the efficacy and specificity of the cellular machinery has been a long time pursuit and, due to inherent flexibility, optical manipulation is of particular interest. However, optical forces are relatively small and cannot significantly modify diffusion properties. Here we show that the effectiveness of microparticle transport can be dramatically enhanced by recycling the optical energy through an effective optical advection process. We demonstrate theoretically and experimentally that this new advection mechanism permits an efficient control of collective and directional mass transport in colloidal systems. The cooperative long-range interaction between large numbers of particles can be optically manipulated to create complex flow patterns, enabling efficient and tunable transport in microfluidic lab-on-chip platforms. PMID:26440069

  14. Analytical solutions for benchmarking cold regions subsurface water flow and energy transport models: one-dimensional soil thaw with conduction and advection

    USGS Publications Warehouse

    Kurylyk, Barret L.; McKenzie, Jeffrey M; MacQuarrie, Kerry T. B.; Voss, Clifford I.

    2014-01-01

    Numerous cold regions water flow and energy transport models have emerged in recent years. Dissimilarities often exist in their mathematical formulations and/or numerical solution techniques, but few analytical solutions exist for benchmarking flow and energy transport models that include pore water phase change. This paper presents a detailed derivation of the Lunardini solution, an approximate analytical solution for predicting soil thawing subject to conduction, advection, and phase change. Fifteen thawing scenarios are examined by considering differences in porosity, surface temperature, Darcy velocity, and initial temperature. The accuracy of the Lunardini solution is shown to be proportional to the Stefan number. The analytical solution results obtained for soil thawing scenarios with water flow and advection are compared to those obtained from the finite element model SUTRA. Three problems, two involving the Lunardini solution and one involving the classic Neumann solution, are recommended as standard benchmarks for future model development and testing.

  15. MODFLOW-2000 : the U.S. Geological Survey modular ground-water model--documentation of the Advective-Transport Observation (ADV2) Package

    USGS Publications Warehouse

    Anderman, Evan R.; Hill, Mary Catherine

    2001-01-01

    Observations of the advective component of contaminant transport in steady-state flow fields can provide important information for the calibration of ground-water flow models. This report documents the Advective-Transport Observation (ADV2) Package, version 2, which allows advective-transport observations to be used in the three-dimensional ground-water flow parameter-estimation model MODFLOW-2000. The ADV2 Package is compatible with some of the features in the Layer-Property Flow and Hydrogeologic-Unit Flow Packages, but is not compatible with the Block-Centered Flow or Generalized Finite-Difference Packages. The particle-tracking routine used in the ADV2 Package duplicates the semi-analytical method of MODPATH, as shown in a sample problem. Particles can be tracked in a forward or backward direction, and effects such as retardation can be simulated through manipulation of the effective-porosity value used to calculate velocity. Particles can be discharged at cells that are considered to be weak sinks, in which the sink applied does not capture all the water flowing into the cell, using one of two criteria: (1) if there is any outflow to a boundary condition such as a well or surface-water feature, or (2) if the outflow exceeds a user specified fraction of the cell budget. Although effective porosity could be included as a parameter in the regression, this capability is not included in this package. The weighted sum-of-squares objective function, which is minimized in the Parameter-Estimation Process, was augmented to include the square of the weighted x-, y-, and z-components of the differences between the simulated and observed advective-front locations at defined times, thereby including the direction of travel as well as the overall travel distance in the calibration process. The sensitivities of the particle movement to the parameters needed to minimize the objective function are calculated for any particle location using the exact sensitivity

  16. Advection around ventilated U-shaped burrows: A model study

    NASA Astrophysics Data System (ADS)

    Brand, Andreas; Lewandowski, JöRg; Hamann, Enrico; Nützmann, Gunnar

    2013-05-01

    Advective transport in the porous matrix of sediments surrounding burrows formed by fauna such as Chironomus plumosus has been generally neglected. A positron emission tomography study recently revealed that the pumping activity of the midge larvae can indeed induce fluid flow in the sediment. We present a numerical model study which explores the conditions at which advective transport in the sediment becomes relevant. A 0.15 m deep U-shaped burrow with a diameter of 0.002 m within the sediment was represented in a 3-D domain. Fluid flow in the burrow was calculated using the Navier-Stokes equation for incompressible laminar flow in the burrow, and flow in the sediment was described by Darcy's law. Nonreactive and reactive transport scenarios were simulated considering diffusion and advection. The pumping activity of the model larva results in considerable advective flow in the sediment at reasonable high permeabilities with flow velocities of up to 7.0 × 10-6 m s-1 close to the larva for a permeability of 3 × 10-12 m2. At permeabilities below 7 × 10-13 m2 advection is negligible compared to diffusion. Reactive transport simulations using first-order kinetics for oxygen revealed that advective flux into the sediment downstream of the pumping larva enhances sedimentary uptake, while the advective flux into the burrow upstream of the larvae inhibits diffusive sedimentary uptake. Despite the fact that both effects cancel each other with respect to total solute uptake, the advection-induced asymmetry in concentration distribution can lead to a heterogeneous solute and redox distribution in the sediment relevant to complex reaction networks.

  17. Surfzone alongshore advective accelerations: observations and modeling

    NASA Astrophysics Data System (ADS)

    Hansen, J.; Raubenheimer, B.; Elgar, S.

    2014-12-01

    The sources, magnitudes, and impacts of non-linear advective accelerations on alongshore surfzone currents are investigated with observations and a numerical model. Previous numerical modeling results have indicated that advective accelerations are an important contribution to the alongshore force balance, and are required to understand spatial variations in alongshore currents (which may result in spatially variable morphological change). However, most prior observational studies have neglected advective accelerations in the alongshore force balance. Using a numerical model (Delft3D) to predict optimal sensor locations, a dense array of 26 colocated current meters and pressure sensors was deployed between the shoreline and 3-m water depth over a 200 by 115 m region near Duck, NC in fall 2013. The array included 7 cross- and 3 alongshore transects. Here, observational and numerical estimates of the dominant forcing terms in the alongshore balance (pressure and radiation-stress gradients) and the advective acceleration terms will be compared with each other. In addition, the numerical model will be used to examine the force balance, including sources of velocity gradients, at a higher spatial resolution than possible with the instrument array. Preliminary numerical results indicate that at O(10-100 m) alongshore scales, bathymetric variations and the ensuing alongshore variations in the wave field and subsequent forcing are the dominant sources of the modeled velocity gradients and advective accelerations. Additional simulations and analysis of the observations will be presented. Funded by NSF and ASDR&E.

  18. Diffusion and Advection using Cellular Potts Model

    NASA Astrophysics Data System (ADS)

    Dan, Debasis; Glazier, James

    2005-03-01

    The Cellular Potts Model (CPM) is a robust cell level methodology for simulation of biological tissues and morphogenesis. Standard diffusion solvers in the CPM use finite difference methods on the underlying CPM lattice. These methods have difficulty in simulating local advection in the ECM due to physiology and morphogenesis. To circumvent the problem of instabilities we simulate advection-diffusion within the framework of CPM using off-lattice finite-difference methods. We define a set of generalised fluid "cells" or particles which separate advection and diffusion from the lattice. Diffusion occurs between neighboring fluid cells by local averaging rules which approximate the Laplacian. CPM movement of the cells by spin flips handles the advection. The extension allows the CPM to model viscosity explicitly by including a relative velocity constraint on the fluid. The extended CPM correctly reproduces flow profiles of viscous fluids in cylindrical tube, during Stokes flow across a sphere and in flow in concentric cylindrical shells. We illustrate various conditions for diffusion including multiple instantaneous sources, continuous sources, moving sources and different boundary geometries and conditions to validate our approximation by comparing with analytical and established numerical solutions.

  19. Modelling coupled chemico-osmotic and advective-diffusive transport of nitrate salts in the Callovo-Oxfordian Clay

    NASA Astrophysics Data System (ADS)

    Baechler, S.; Croisé, J.; Altmann, S.

    2012-12-01

    Chemico-osmosis is a recognized phenomenon taking place in clay mineral-rich sedimentary formations and a number of questions have been raised concerning its potential effects on pressure fields in and around underground radioactive waste repositories installed in such formations. Certain radioactive waste packages contain large quantities of nitrate salts whose release might result in the presence of highly concentrated salt solutions in the disposal cells, during their resaturation after closure of the facility. This would lead to large solute concentration gradients within the formation's porewater which could then potentially induce significant chemico-osmotic fluxes. In this paper, we assess the impact of chemico-osmotic fluxes on the water pressure during the post-closure period of a typical disposal cell for intermediate-level, long-lived bituminised radioactive waste in the Callovo-Oxfordian Clay formation. A numerical model of chemico-osmotic water flow and solute transport has been developed based on the work of Bader and Kooi (2005) [5], and including Bresler's dependence of osmotic efficiency on concentration and compaction state [9]. Model validity has been extended to highly concentrated solutions by incorporating a concentration-dependent activity coefficient, based on the Pitzer's equations. Results show that due to the strong dependence of the osmotic coefficient on concentration, the impact of chemico-osmosis on water flow and on the pressure field around the disposal cell is relatively low. A maximum overpressure of the order of 1 MPa was obtained. No difference in the simulation results were noticed for disposal cell solutions having concentrations higher than 1 M NaNO3. Differences between simulations were found to be almost entirely due to Bresler's relationship i.e., the model of the dependence between osmotic efficiency and concentration, and only slightly on the activity coefficient correction. Questions remain regarding the appropriate

  20. Theory of advection-driven long range biotic transport

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We propose a simple mechanistic model to examine the effects of advective flow on the spread of fungal diseases spread by wind-blown spores. The model is defined by a set of two coupled non-linear partial differential equations for spore densities. One equation describes the long-distance advectiv...

  1. Update on Advection-Diffusion Purge Flow Model

    NASA Technical Reports Server (NTRS)

    Brieda, Lubos

    2015-01-01

    Gaseous purge is commonly used in sensitive spacecraft optical or electronic instruments to prevent infiltration of contaminants and/or water vapor. Typically, purge is sized using simplistic zero-dimensional models that do not take into account instrument geometry, surface effects, and the dependence of diffusive flux on the concentration gradient. For this reason, an axisymmetric computational fluid dynamics (CFD) simulation was recently developed to model contaminant infiltration and removal by purge. The solver uses a combined Navier-Stokes and Advection-Diffusion approach. In this talk, we report on updates in the model, namely inclusion of a particulate transport model.

  2. Exact analytical solutions for contaminant transport in rivers 1. The equilibrium advection-dispersion equation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analytical solutions of the advection-dispersion equation and related models are indispensable for predicting or analyzing contaminant transport processes in streams and rivers, as well as in other surface water bodies. Many useful analytical solutions originated in disciplines other than surface-w...

  3. Steady-state and transient models of groundwater flow and advective transport, Eastern Snake River Plain aquifer, Idaho National Laboratory and vicinity, Idaho

    USGS Publications Warehouse

    Ackerman, Daniel J.; Rousseau, Joseph P.; Rattray, Gordon W.; Fisher, Jason C.

    2010-01-01

    Three-dimensional steady-state and transient models of groundwater flow and advective transport in the eastern Snake River Plain aquifer were developed by the U.S. Geological Survey in cooperation with the U.S. Department of Energy. The steady-state and transient flow models cover an area of 1,940 square miles that includes most of the 890 square miles of the Idaho National Laboratory (INL). A 50-year history of waste disposal at the INL has resulted in measurable concentrations of waste contaminants in the eastern Snake River Plain aquifer. Model results can be used in numerical simulations to evaluate the movement of contaminants in the aquifer. Saturated flow in the eastern Snake River Plain aquifer was simulated using the MODFLOW-2000 groundwater flow model. Steady-state flow was simulated to represent conditions in 1980 with average streamflow infiltration from 1966-80 for the Big Lost River, the major variable inflow to the system. The transient flow model simulates groundwater flow between 1980 and 1995, a period that included a 5-year wet cycle (1982-86) followed by an 8-year dry cycle (1987-94). Specified flows into or out of the active model grid define the conditions on all boundaries except the southwest (outflow) boundary, which is simulated with head-dependent flow. In the transient flow model, streamflow infiltration was the major stress, and was variable in time and location. The models were calibrated by adjusting aquifer hydraulic properties to match simulated and observed heads or head differences using the parameter-estimation program incorporated in MODFLOW-2000. Various summary, regression, and inferential statistics, in addition to comparisons of model properties and simulated head to measured properties and head, were used to evaluate the model calibration. Model parameters estimated for the steady-state calibration included hydraulic conductivity for seven of nine hydrogeologic zones and a global value of vertical anisotropy. Parameters

  4. A convexity preserving scheme for conservative advection transport

    NASA Astrophysics Data System (ADS)

    Xiao, Feng; Peng, Xindong

    2004-08-01

    A simple and practical scheme for advection transport equation is presented. The scheme, namely piecewise rational method (PRM), is a variant of the existing piecewise parabolic method (PPM) of Colella and Woodward (1984). Instead of the parabolic function, a rational function is used for the reconstruction. Making use of the convexity preserving nature of the rational function enables us to obtain oscillation-less numerical solutions, but avoids the adjustments of the cell-interface values to enforce the monotonicity in PPM. The PRM is very simple and computationally efficient. Our numerical results show that PRM is competitive to the PPM in many aspects, such as numerical accuracy and shape-preserving property.

  5. A Comparative Study of Indoor Radon Contributed by Diffusive and Advective Transport through Intact Concrete

    NASA Astrophysics Data System (ADS)

    Chauhan, R. P.; Kumar, Amit

    The present work is aimed that out of diffusive and advective transport which is dominant process for indoor radon entry under normal room conditions. For this purpose the radon diffusion coefficient and permeability of concrete were measured by specially designed experimental set up. The radon diffusion coefficient of concrete was measured by continuous radon monitor. The measured value was (3.78 ± 0.39)×10-8 m2/s and found independent of the radon gas concentration in source chamber. The radon permeability of concrete varied between 1.85×10-17 to 1.36×10-15 m2 for the bulk pressure difference fewer than 20 Pa to 73.3 kPa. From the measured diffusion coefficient and absolute permeability, the radon flux from the concrete surface having concentrations gradient 12-40 kBq/m3 and typical floor thickness 0.1 m was calculated by the application of Fick and Darcy laws. Using the measured flux attributable to diffusive and advective transport, the indoor radon concentration for a typical Indian model room having dimension (5×6×7) m3 was calculated under average room ventilation (0.63 h-1). The results showed that the contribution of diffusive transport through intact concrete is dominant over the advective transport, as expected from the low values of concrete permeability.

  6. Analytical solution for one-dimensional advection-dispersion transport equation with distance-dependent coefficients

    NASA Astrophysics Data System (ADS)

    Pérez Guerrero, J. S.; Skaggs, T. H.

    2010-08-01

    SummaryMathematical models describing contaminant transport in heterogeneous porous media are often formulated as an advection-dispersion transport equation with distance-dependent transport coefficients. In this work, a general analytical solution is presented for the linear, one-dimensional advection-dispersion equation with distance-dependent coefficients. An integrating factor is employed to obtain a transport equation that has a self-adjoint differential operator, and a solution is found using the generalized integral transform technique (GITT). It is demonstrated that an analytical expression for the integrating factor exists for several transport equation formulations of practical importance in groundwater transport modeling. Unlike nearly all solutions available in the literature, the current solution is developed for a finite spatial domain. As an illustration, solutions for the particular case of a linearly increasing dispersivity are developed in detail and results are compared with solutions from the literature. Among other applications, the current analytical solution will be particularly useful for testing or benchmarking numerical transport codes because of the incorporation of a finite spatial domain.

  7. Thermally driven advection for radioxenon transport from an underground nuclear explosion

    NASA Astrophysics Data System (ADS)

    Sun, Yunwei; Carrigan, Charles R.

    2016-05-01

    Barometric pumping is a ubiquitous process resulting in migration of gases in the subsurface that has been studied as the primary mechanism for noble gas transport from an underground nuclear explosion (UNE). However, at early times following a UNE, advection driven by explosion residual heat is relevant to noble gas transport. A rigorous measure is needed for demonstrating how, when, and where advection is important. In this paper three physical processes of uncertain magnitude (oscillatory advection, matrix diffusion, and thermally driven advection) are parameterized by using boundary conditions, system properties, and source term strength. Sobol' sensitivity analysis is conducted to evaluate the importance of all physical processes influencing the xenon signals. This study indicates that thermally driven advection plays a more important role in producing xenon signals than oscillatory advection and matrix diffusion at early times following a UNE, and xenon isotopic ratios are observed to have both time and spatial dependence.

  8. Analytical solution for the advection-dispersion transport equation in layered media

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The advection-dispersion transport equation with first-order decay was solved analytically for multi-layered media using the classic integral transform technique (CITT). The solution procedure used an associated non-self-adjoint advection-diffusion eigenvalue problem that had the same form and coef...

  9. Thermal advection and stratification effects on surface winds and the low level meridional mass transport

    NASA Technical Reports Server (NTRS)

    Levy, Gad; Tiu, Felice S.

    1990-01-01

    Statistical tests are performed on the Seasat scatterometer observations to examine if and to what degree thermal advection and stratification effects manifest themselves in these remotely sensed measurements of mean wind and wind stress over the ocean. On the basis of a two layer baroclinic boundary layer model which is presented, it is shown that the thermal advection and stratification of the entire boundary layer as well as the geostrophic forcing influence the modeled near surface wind and wind stress profiles. Evidence of diurnal variation in the stratification under barotropic conditions is found in the data, with the daytime marine boundary layer being more convective than its nighttime counterpart. The temporal and spacial sampling pattern of the satellite makes it impossible to recover the full diurnal cycle, however. The observed effects of the thermal advection are shown to be statistically significant during the day (and presumed more convective) hours, causing a systematic increase in the poleward transport of mass and heat. The statistical results are in a qualitative agreement with the model simulations and cannot be reproduced in randomized control tests.

  10. Rigorous upper bounds for fluid and plasma transport due to passive advection

    SciTech Connect

    Krommes, J.A.; Smith, R.A.; Kim, C.B.

    1987-07-01

    The formulation of variational principles for transport due to passive advection is described. A detailed account of the work has been published elsewhere. In the present paper, the motivations, philosophy, and implications of the method are briefly discussed. 15 refs.

  11. AN EXACT PEAK CAPTURING AND OSCILLATION-FREE SCHEME TO SOLVE ADVECTION-DISPERSION TRANSPORT EQUATIONS

    EPA Science Inventory

    An exact peak capturing and essentially oscillation-free (EPCOF) algorithm, consisting of advection-dispersion decoupling, backward method of characteristics, forward node tracking, and adaptive local grid refinement, is developed to solve transport equations. This algorithm repr...

  12. Analytical solutions of a fractional diffusion-advection equation for solar cosmic-ray transport

    SciTech Connect

    Litvinenko, Yuri E.; Effenberger, Frederic

    2014-12-01

    Motivated by recent applications of superdiffusive transport models to shock-accelerated particle distributions in the heliosphere, we analytically solve a one-dimensional fractional diffusion-advection equation for the particle density. We derive an exact Fourier transform solution, simplify it in a weak diffusion approximation, and compare the new solution with previously available analytical results and with a semi-numerical solution based on a Fourier series expansion. We apply the results to the problem of describing the transport of energetic particles, accelerated at a traveling heliospheric shock. Our analysis shows that significant errors may result from assuming an infinite initial distance between the shock and the observer. We argue that the shock travel time should be a parameter of a realistic superdiffusive transport model.

  13. Analytical Solutions of a Fractional Diffusion-advection Equation for Solar Cosmic-Ray Transport

    NASA Astrophysics Data System (ADS)

    Litvinenko, Yuri E.; Effenberger, Frederic

    2014-12-01

    Motivated by recent applications of superdiffusive transport models to shock-accelerated particle distributions in the heliosphere, we analytically solve a one-dimensional fractional diffusion-advection equation for the particle density. We derive an exact Fourier transform solution, simplify it in a weak diffusion approximation, and compare the new solution with previously available analytical results and with a semi-numerical solution based on a Fourier series expansion. We apply the results to the problem of describing the transport of energetic particles, accelerated at a traveling heliospheric shock. Our analysis shows that significant errors may result from assuming an infinite initial distance between the shock and the observer. We argue that the shock travel time should be a parameter of a realistic superdiffusive transport model.

  14. Monarch butterfly spatially discrete advection model.

    PubMed

    Yakubu, Abdul-Aziz; Sáenz, Roberto; Stein, Julie; Jones, Laura E

    2004-08-01

    We study the population cycles of the Monarch butterfly using one of the simplest systems incorporating both migration and local dynamics. The annual migration of the Monarch involves four generations. Members of Generations 1-3 (occasionally 4) migrate from the over-wintering site in Central Mexico to breeding grounds that extend as far north as the Northern United States and Southern Canada. A portion of the Generation 3 and all members of the Generation 4 butterflies begin their return to the over-wintering grounds in August through October where they enter reproductive diapause for several months. We developed a simple discrete-time island chain model in which different fecundity functions are used to model the reproductive strategies of each generation. The fecundity functions are selected from broad classes of functions that capture the effects of either contest or scramble intraspecific competition in the Monarch population. The objectives of our research are multiple and include the study of the generationally dependent intraspecific competition and its effect on the pool size of migrants as well as the persistence of the overall butterfly populations. The stage structure used in modeling the Monarch butterfly dynamics and their generationally dependent reproductive strategies naturally support fluctuating patterns and multiple attractors. The implications of these fluctuations and attractors on the long-term survival of the Monarch butterfly population are explored.

  15. Simulation of the advective methane transport and AOM in Shenhu area, the Northern South China Sea

    NASA Astrophysics Data System (ADS)

    Liu, L.; Wu, N.

    2012-04-01

    Anaerobic Oxidation of Methane (AOM) occurs in the transition zone between the presence of sulfate and methane. This reaction is an important process for methane and the global carbon cycle. Methane gas hydrates bearing sediments were recovered in Shenhu Area, the Northern South China Sea, and methane advective transport was detected in this area as well. A one dimension numerical simulation tool was implemented to study the AOM process combined with the advective methane transport in Shenhu Area according to the local drilling data and geochemical information. The modeled results suggest that local methane flux will be consumed in the sediment column via dissolution, sorption and AOM reaction. A portion of methane will enter water column and possibly atmosphere if the methane flux was one order of magnitude higher than current level. Furthermore, the calculated rates of AOM in Shenhu area range similar to that of gas hydrate mounds in Mexico Golf. However, AOM is ability to consume more methane than that in Golf of Mexico due to the lower permeable sediment associated with a deeper sulfate methane transition layer.

  16. In situ experiment to determine advective-diffusive controls on solute transport in a clay-rich aquitard.

    PubMed

    Barbour, S Lee; Hendry, M Jim; Wassenaar, Leonard I

    2012-04-01

    Solute transport in clay-rich aquitards is characterized as molecular diffusion- or advection-dominated based on the Péclet number (P(e)). However, few field-based measurements of the coefficient of molecular diffusion (D(e)) exist, and none with a range of advection- or diffusion-dominated conditions in the same aquitard. In this long-term field experiment, standing water in a recovering well was spiked with deuterium ((2)H), then water-level recovery and δ(2)H values were monitored as the well returned to static conditions over 1054 days. After a second (2)H spike, water levels and δ(2)H values were monitored to day 1644 while under near static conditions. Modeling of the second spike was used to define the D(e) of (2)H as (3-4)× 10(-10)m(2)s(-1) for an accessible porosity of 0.31. Reservoir concentrations from the initial spike were modeled to define the transition from advection- to diffusion-dominated transport. This occurred after 200 days, consistent with a transition in P(e) from <1 to >1 when the length term is taken as the radial extent of the tracer plume (normalized concentration <0.05). This study verifies plume extent as the characteristic length term in the calculation of P(e) and demonstrates the transition from advection- to diffusion-dominated transport as the value of P(e) decreases below unity.

  17. Space shuttle exhaust plumes in the lower thermosphere: Advective transport and diffusive spreading

    NASA Astrophysics Data System (ADS)

    Stevens, Michael H.; Lossow, Stefan; Siskind, David E.; Meier, R. R.; Randall, Cora E.; Russell, James M.; Urban, Jo; Murtagh, Donal

    2014-02-01

    The space shuttle main engine plume deposited between 100 and 115 km altitude is a valuable tracer for global-scale dynamical processes. Several studies have shown that this plume can reach the Arctic or Antarctic to form bursts of polar mesospheric clouds (PMCs) within a few days. The rapid transport of the shuttle plume is currently not reproduced by general circulation models and is not well understood. To help delineate the issues, we present the complete satellite datasets of shuttle plume observations by the Sounding of the Atmosphere using Broadband Emission Radiometry instrument and the Sub-Millimeter Radiometer instrument. From 2002 to 2011 these two instruments observed 27 shuttle plumes in over 600 limb scans of water vapor emission, from which we derive both advective meridional transport and diffusive spreading. Each plume is deposited at virtually the same place off the United States east coast so our results are relevant to northern mid-latitudes. We find that the advective transport for the first 6-18 h following deposition depends on the local time (LT) of launch: shuttle plumes deposited later in the day (~13-22 LT) typically move south whereas they otherwise typically move north. For these younger plumes rapid transport is most favorable for launches at 6 and 18 LT, when the displacement is 10° in latitude corresponding to an average wind speed of 30 m/s. For plumes between 18 and 30 h old some show average sustained meridional speeds of 30 m/s. For plumes between 30 and 54 h old the observations suggest a seasonal dependence to the meridional transport, peaking near the beginning of year at 24 m/s. The diffusive spreading of the plume superimposed on the transport is on average 23 m/s in 24 h. The plume observations show large variations in both meridional transport and diffusive spreading so that accurate modeling requires knowledge of the winds specific to each case. The combination of transport and spreading from the STS-118 plume in August

  18. Contour advection with surgery: A technique for investigating finescale structure in tracer transport

    NASA Technical Reports Server (NTRS)

    Waugh, Darryn W.; Plumb, R. Alan

    1994-01-01

    We present a trajectory technique, contour advection with surgery (CAS), for tracing the evolution of material contours in a specified (including observed) evolving flow. CAS uses the algorithms developed by Dritschel for contour dynamics/surgery to trace the evolution of specified contours. The contours are represented by a series of particles, which are advected by a specified, gridded, wind distribution. The resolution of the contours is preserved by continually adjusting the number of particles, and finescale features are produced that are not present in the input data (and cannot easily be generated using standard trajectory techniques). The reliability, and dependence on the spatial and temporal resolution of the wind field, of the CAS procedure is examined by comparisons with high-resolution numerical data (from contour dynamics calculations and from a general circulation model), and with routine stratospheric analyses. These comparisons show that the large-scale motions dominate the deformation field and that CAS can accurately reproduce small scales from low-resolution wind fields. The CAS technique therefore enables examination of atmospheric tracer transport at previously unattainable resolution.

  19. Diffusion related isotopic fractionation effects with one-dimensional advective-dispersive transport.

    PubMed

    Xu, Bruce S; Lollar, Barbara Sherwood; Passeport, Elodie; Sleep, Brent E

    2016-04-15

    Aqueous phase diffusion-related isotope fractionation (DRIF) for carbon isotopes was investigated for common groundwater contaminants in systems in which transport could be considered to be one-dimensional. This paper focuses not only on theoretically observable DRIF effects in these systems but introduces the important concept of constraining "observable" DRIF based on constraints imposed by the scale of measurements in the field, and on standard limits of detection and analytical uncertainty. Specifically, constraints for the detection of DRIF were determined in terms of the diffusive fractionation factor, the initial concentration of contaminants (C0), the method detection limit (MDL) for isotopic analysis, the transport time, and the ratio of the longitudinal mechanical dispersion coefficient to effective molecular diffusion coefficient (Dmech/Deff). The results allow a determination of field conditions under which DRIF may be an important factor in the use of stable carbon isotope measurements for evaluation of contaminant transport and transformation for one-dimensional advective-dispersive transport. This study demonstrates that for diffusion-dominated transport of BTEX, MTBE, and chlorinated ethenes, DRIF effects are only detectable for the smaller molar mass compounds such as vinyl chloride for C0/MDL ratios of 50 or higher. Much larger C0/MDL ratios, corresponding to higher source concentrations or lower detection limits, are necessary for DRIF to be detectable for the higher molar mass compounds. The distance over which DRIF is observable for VC is small (less than 1m) for a relatively young diffusive plume (<100years), and DRIF will not easily be detected by using the conventional sampling approach with "typical" well spacing (at least several meters). With contaminant transport by advection, mechanical dispersion, and molecular diffusion this study suggests that in field sites where Dmech/Deff is larger than 10, DRIF effects will likely not be

  20. A Petroleum Vapor Intrusion Model Involving Upward Advective Soil Gas Flow Due to Methane Generation.

    PubMed

    Yao, Yijun; Wu, Yun; Wang, Yue; Verginelli, Iason; Zeng, Tian; Suuberg, Eric M; Jiang, Lin; Wen, Yuezhong; Ma, Jie

    2015-10-06

    At petroleum vapor intrusion (PVI) sites at which there is significant methane generation, upward advective soil gas transport may be observed. To evaluate the health and explosion risks that may exist under such scenarios, a one-dimensional analytical model describing these processes is introduced in this study. This new model accounts for both advective and diffusive transport in soil gas and couples this with a piecewise first-order aerobic biodegradation model, limited by oxygen availability. The predicted results from the new model are shown to be in good agreement with the simulation results obtained from a three-dimensional numerical model. These results suggest that this analytical model is suitable for describing cases involving open ground surface beyond the foundation edge, serving as the primary oxygen source. This new analytical model indicates that the major contribution of upward advection to indoor air concentration could be limited to the increase of soil gas entry rate, since the oxygen in soil might already be depleted owing to the associated high methane source vapor concentration.

  1. Scaling of geochemical reaction rates via advective solute transport

    NASA Astrophysics Data System (ADS)

    Hunt, A. G.; Ghanbarian, B.; Skinner, T. E.; Ewing, R. P.

    2015-07-01

    Transport in porous media is quite complex, and still yields occasional surprises. In geological porous media, the rate at which chemical reactions (e.g., weathering and dissolution) occur is found to diminish by orders of magnitude with increasing time or distance. The temporal rates of laboratory experiments and field observations differ, and extrapolating from laboratory experiments (in months) to field rates (in millions of years) can lead to order-of-magnitude errors. The reactions are transport-limited, but characterizing them using standard solute transport expressions can yield results in agreement with experiment only if spurious assumptions and parameters are introduced. We previously developed a theory of non-reactive solute transport based on applying critical path analysis to the cluster statistics of percolation. The fractal structure of the clusters can be used to generate solute distributions in both time and space. Solute velocities calculated from the temporal evolution of that distribution have the same time dependence as reaction-rate scaling in a wide range of field studies and laboratory experiments, covering some 10 decades in time. The present theory thus both explains a wide range of experiments, and also predicts changes in the scaling behavior in individual systems with increasing time and/or length scales. No other theory captures these variations in scaling by invoking a single physical mechanism. Because the successfully predicted chemical reactions include known results for silicate weathering rates, our theory provides a framework for understanding changes in the global carbon cycle, including its effects on extinctions, climate change, soil production, and denudation rates. It further provides a basis for understanding the fundamental time scales of hydrology and shallow geochemistry, as well as the basis of industrial agriculture.

  2. Sensitivity of advective transfer times across the North Atlantic Ocean to the temporal and spatial resolution of model velocity data: Implication for European eel larval transport

    NASA Astrophysics Data System (ADS)

    Blanke, Bruno; Bonhommeau, Sylvain; Grima, Nicolas; Drillet, Yann

    2012-05-01

    European eel (Anguilla anguilla) larvae achieve one of the longest larval migrations of the marine realm, i.e., more than 6000 km from their spawning grounds in the Sargasso Sea to European continental shelves. The duration of this migration remains debated, between 7 months and 3 years. This information is, however, crucial since it determines the period over which larvae are affected by environmental conditions and hence the subsequent recruitment success. We investigate the pathways and duration of trans-Atlantic connections using 3 years of high-resolution (daily, 1/12°) velocity fields available from a Mercator-Océan model configuration without data assimilation. We study specifically the effect of spatial and temporal resolutions on our estimates by applying various filters in time (from daily to 12-day averages) and space (from 1/12° to 1° gridcell aggregation) to the nominal model outputs. Numerical particles are released in the presumed European eel spawning area and considered as passive tracers at three specific depths (around 0, 50, and 200 m). We diagnose particularly the intensity of the water transfer between suitable control sections that encompass the eel larva distribution. Transit ages are also investigated, with a particular focus on the pathways that minimize the connection times between the western and eastern North Atlantic. We show that small-scale structures (eddies and filaments) contribute to faster connections though they also correspond to additional complexity in trajectories. The shortest pathways mostly follow the Gulf Stream and the North Atlantic Drift, whereas interior connections require longer transfers that prove less compatible with biological observations.

  3. Analytical solutions of the one-dimensional advection-dispersion solute transport equation subject to time-dependent boundary conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analytical solutions of the advection-dispersion solute transport equation remain useful for a large number of applications in science and engineering. In this paper we extend the Duhamel theorem, originally established for diffusion type problems, to the case of advective-dispersive transport subj...

  4. Removing volatile contaminants from the unsaturated zone by inducing advective air-phase transport

    USGS Publications Warehouse

    Baehr, A.L.; Hoag, G.E.; Marley, M.C.

    1989-01-01

    Organic liquids inadvertently spilled and then distributed in the unsaturated zone can pose a long-term threat to ground water. Many of these substances have significant volatility, and thereby establish a premise for contaminant removal from the unsaturated zone by inducing advective air-phase transport with wells screened in the unsaturated zone. In order to focus attention on the rates of mass transfer from liquid to vapour phases, sand columns were partially saturated with gasoline and vented under steady air-flow conditions. The ability of an equilibrium-based transport model to predict the hydrocarbon vapor flux from the columns implies an efficient rate of local phase transfer for reasonably high air-phase velocities. Thus the success of venting remediations will depend primarily on the ability to induce an air-flow field in a heterogeneous unsaturated zone that will intersect the distributed contaminant. To analyze this aspect of the technique, a mathematical model was developed to predict radially symmetric air flow induced by venting from a single well. This model allows for in-situ determinations of air-phase permeability, which is the fundamental design parameter, and for the analysis of the limitations of a single well design. A successful application of the technique at a site once contaminated by gasoline supports the optimism derived from the experimental and modeliing phases of this study, and illustrates the well construction and field methods used to document the volatile contaminant recovery. ?? 1989.

  5. Numerical simulation of advective-dispersive multisolute transport with sorption, ion exchange and equilibrium chemistry

    USGS Publications Warehouse

    Lewis, F.M.; Voss, C.I.; Rubin, Jacob

    1986-01-01

    A model was developed that can simulate the effect of certain chemical and sorption reactions simultaneously among solutes involved in advective-dispersive transport through porous media. The model is based on a methodology that utilizes physical-chemical relationships in the development of the basic solute mass-balance equations; however, the form of these equations allows their solution to be obtained by methods that do not depend on the chemical processes. The chemical environment is governed by the condition of local chemical equilibrium, and may be defined either by the linear sorption of a single species and two soluble complexation reactions which also involve that species, or binary ion exchange and one complexation reaction involving a common ion. Partial differential equations that describe solute mass balance entirely in the liquid phase are developed for each tenad (a chemical entity whose total mass is independent of the reaction process) in terms of their total dissolved concentration. These equations are solved numerically in two dimensions through the modification of an existing groundwater flow/transport computer code. (Author 's abstract)

  6. THE INTERPLAY BETWEEN GEOCHEMICAL REACTIONS AND ADVECTION-DISPERSION IN CONTAMINANT TRANSPORT AT A URANIUM MILL TAILINGS SITE

    EPA Science Inventory

    It is well known that the fate and transport of contaminants in the subsurface are controlled by complex processes including advection, dispersion-diffusion, and chemical reactions. However, the interplay between the physical transport processes and chemical reactions, and their...

  7. The role of advection and dispersion in the rock matrix on the transport of leaking CO2-saturated brine along a fractured zone

    NASA Astrophysics Data System (ADS)

    Ahmad, Nawaz; Wörman, Anders; Sanchez-Vila, Xavier; Bottacin-Busolin, Andrea

    2016-12-01

    CO2 that is injected into a geological storage reservoir can leak in dissolved form because of brine displacement from the reservoir, which is caused by large-scale groundwater motion. Simulations of the reactive transport of leaking CO2aq along a conducting fracture in a clay-rich caprock are conducted to analyze the effect of various physical and geochemical processes. Whilst several modeling transport studies along rock fractures have considered diffusion as the only transport process in the surrounding rock matrix (diffusive transport), this study analyzes the combined role of advection and dispersion in the rock matrix in addition to diffusion (advection-dominated transport) on the migration of CO2aq along a leakage pathway and its conversion in geochemical reactions. A sensitivity analysis is performed to quantify the effect of fluid velocity and dispersivity. Variations in the porosity and permeability of the medium are found in response to calcite dissolution and precipitation along the leakage pathway. We observe that advection and dispersion in the rock matrix play a significant role in the overall transport process. For the parameters that were used in this study, advection-dominated transport increased the leakage of CO2aq from the reservoir by nearly 305%, caused faster transport and increased the mass conversion of CO2aq in geochemical reactions along the transport pathway by approximately 12.20% compared to diffusive transport.

  8. Analyzing critical propagation in a reaction-diffusion-advection model using unstable slow waves.

    PubMed

    Kneer, Frederike; Obermayer, Klaus; Dahlem, Markus A

    2015-02-01

    The effect of advection on the propagation and in particular on the critical minimal speed of traveling waves in a reaction-diffusion model is studied. Previous theoretical studies estimated this effect on the velocity of stable fast waves and predicted the existence of a critical advection strength below which propagating waves are not supported anymore. In this paper, an analytical expression for the advection-velocity relation of the unstable slow wave is derived. In addition, the critical advection strength is calculated taking into account the unstable slow wave solution. We also analyze a two-variable reaction-diffusion-advection model numerically in a wide parameter range. Due to the new control parameter (advection) we can find stable wave propagation in the otherwise non-excitable parameter regime, if the advection strength exceeds a critical value. Comparing theoretical predictions to numerical results, we find that they are in good agreement. Theory provides an explanation for the observed behaviour.

  9. Analytic radiative-advective equilibrium as a model for high-latitude climate

    NASA Astrophysics Data System (ADS)

    Cronin, Timothy W.; Jansen, Malte F.

    2016-01-01

    We propose radiative-advective equilibrium as a basic-state model for the high-latitude atmosphere. Temperature profiles are determined by a competition between stabilization by atmospheric shortwave absorption and advective heat flux convergence, and destabilization by surface shortwave absorption. We derive analytic expressions for temperature profiles, assuming power law atmospheric heating profiles as a function of pressure and two-stream windowed-gray longwave radiative transfer. We discuss example profiles with and without an atmospheric window and show that the sensitivity of surface temperature to forcing depends on the nature of the forcing, with greatest sensitivity to radiative forcing by increased optical thickness and least sensitivity to increased atmospheric heat transport. These differences in sensitivity of surface temperature to forcing can be explained in terms of a forcing-dependent lapse-rate feedback.

  10. New Solution of Diffusion-Advection Equation for Cosmic-Ray Transport Using Ultradistributions

    NASA Astrophysics Data System (ADS)

    Rocca, M. C.; Plastino, A. R.; Plastino, A.; Ferri, G. L.; de Paoli, A.

    2015-11-01

    In this paper we exactly solve the diffusion-advection equation (DAE) for cosmic-ray transport. For such a purpose we use the Theory of Ultradistributions of J. Sebastiao e Silva, to give a general solution for the DAE. From the ensuing solution, we obtain several approximations as limiting cases of various situations of physical and astrophysical interest. One of them involves Solar cosmic-rays' diffusion.

  11. Self-organization and advective transport in the cell polarity formation for asymmetric cell division.

    PubMed

    Seirin Lee, Sungrim; Shibata, Tatsuo

    2015-10-07

    Anterior-Posterior (AP) polarity formation of cell membrane proteins plays a crucial role in determining cell asymmetry, which depends not only on the several genetic process but also biochemical and biophysical interactions. The mechanism of AP formation of Caenorhabditis elegans embryo is characterized into the three processes: (i) membrane association and dissociation of posterior and anterior proteins, (ii) diffusion into the membrane and cytosol, and (iii) active cortical and cytoplasmic flows induced by the contraction of the acto-myosin cortex. We explored the mechanism of symmetry breaking and AP polarity formation using self-recruitment model of posterior proteins. We found that the AP polarity pattern is established over wide range in the total mass of polarity proteins and the diffusion ratio in the cytosol to the membrane. We also showed that the advective transport in both membrane and cytosol during the establishment phase affects optimal time interval of establishment and positioning of the posterior domain, and plays a role to increase the robustness in the AP polarity formation by reducing the number of posterior domains for the sensitivity of initial conditions. We also demonstrated that a proper ratio of the total mass to cell size robustly regulate the length scale of the posterior domain.

  12. Pangolin v1.0, a conservative 2-D advection model towards large-scale parallel calculation

    NASA Astrophysics Data System (ADS)

    Praga, A.; Cariolle, D.; Giraud, L.

    2015-02-01

    To exploit the possibilities of parallel computers, we designed a large-scale bidimensional atmospheric advection model named Pangolin. As the basis for a future chemistry-transport model, a finite-volume approach for advection was chosen to ensure mass preservation and to ease parallelization. To overcome the pole restriction on time steps for a regular latitude-longitude grid, Pangolin uses a quasi-area-preserving reduced latitude-longitude grid. The features of the regular grid are exploited to reduce the memory footprint and enable effective parallel performances. In addition, a custom domain decomposition algorithm is presented. To assess the validity of the advection scheme, its results are compared with state-of-the-art models on algebraic test cases. Finally, parallel performances are shown in terms of strong scaling and confirm the efficient scalability up to a few hundred cores.

  13. Advective transport observations with MODPATH-OBS--documentation of the MODPATH observation process

    USGS Publications Warehouse

    Hanson, R.T.; Kauffman, L.K.; Hill, M.C.; Dickinson, J.E.; Mehl, S.W.

    2013-01-01

    The MODPATH-OBS computer program described in this report is designed to calculate simulated equivalents for observations related to advective groundwater transport that can be represented in a quantitative way by using simulated particle-tracking data. The simulated equivalents supported by MODPATH-OBS are (1) distance from a source location at a defined time, or proximity to an observed location; (2) time of travel from an initial location to defined locations, areas, or volumes of the simulated system; (3) concentrations used to simulate groundwater age; and (4) percentages of water derived from contributing source areas. Although particle tracking only simulates the advective component of conservative transport, effects of non-conservative processes such as retardation can be approximated through manipulation of the effective-porosity value used to calculate velocity based on the properties of selected conservative tracers. This program can also account for simple decay or production, but it cannot account for diffusion. Dispersion can be represented through direct simulation of subsurface heterogeneity and the use of many particles. MODPATH-OBS acts as a postprocessor to MODPATH, so that the sequence of model runs generally required is MODFLOW, MODPATH, and MODPATH-OBS. The version of MODFLOW and MODPATH that support the version of MODPATH-OBS presented in this report are MODFLOW-2005 or MODFLOW-LGR, and MODPATH-LGR. MODFLOW-LGR is derived from MODFLOW-2005, MODPATH 5, and MODPATH 6 and supports local grid refinement. MODPATH-LGR is derived from MODPATH 5. It supports the forward and backward tracking of particles through locally refined grids and provides the output needed for MODPATH_OBS. For a single grid and no observations, MODPATH-LGR results are equivalent to MODPATH 5. MODPATH-LGR and MODPATH-OBS simulations can use nearly all of the capabilities of MODFLOW-2005 and MODFLOW-LGR; for example, simulations may be steady-state, transient, or a combination

  14. An advection-based model to increase the temporal resolution of PIV time series.

    PubMed

    Scarano, Fulvio; Moore, Peter

    A numerical implementation of the advection equation is proposed to increase the temporal resolution of PIV time series. The method is based on the principle that velocity fluctuations are transported passively, similar to Taylor's hypothesis of frozen turbulence. In the present work, the advection model is extended to unsteady three-dimensional flows. The main objective of the method is that of lowering the requirement on the PIV repetition rate from the Eulerian frequency toward the Lagrangian one. The local trajectory of the fluid parcel is obtained by forward projection of the instantaneous velocity at the preceding time instant and backward projection from the subsequent time step. The trajectories are approximated by the instantaneous streamlines, which yields accurate results when the amplitude of velocity fluctuations is small with respect to the convective motion. The verification is performed with two experiments conducted at temporal resolutions significantly higher than that dictated by Nyquist criterion. The flow past the trailing edge of a NACA0012 airfoil closely approximates frozen turbulence, where the largest ratio between the Lagrangian and Eulerian temporal scales is expected. An order of magnitude reduction of the needed acquisition frequency is demonstrated by the velocity spectra of super-sampled series. The application to three-dimensional data is made with time-resolved tomographic PIV measurements of a transitional jet. Here, the 3D advection equation is implemented to estimate the fluid trajectories. The reduction in the minimum sampling rate by the use of super-sampling in this case is less, due to the fact that vortices occurring in the jet shear layer are not well approximated by sole advection at large time separation. Both cases reveal that the current requirements for time-resolved PIV experiments can be revised when information is poured from space to time. An additional favorable effect is observed by the analysis in the frequency

  15. An evaluation and intercomparison of four new advection schemes for use in global chemistry models

    NASA Astrophysics Data System (ADS)

    Petersen, Arthur C.; Spee, Edwin J.; van Dop, Han; Hundsdorfer, Willem

    1998-08-01

    The need to use a higher spatial resolution and to include more chemical species in global atmospheric chemistry models has led to a demand for efficient advection schemes with high accuracy. We test four newly developed three-dimensional advection schemes named Mol-rg, Split-u, Split-us, and Split-rg. We compare the new schemes with the existing schemes Slopes and Second Moments, both implemented on a uniform grid. Mol-rg and Split-rg make use of a reduced grid. Split-us is an unconditionally stable scheme on a uniform grid. Two tests are performed with all schemes: a solid-body rotation test and a radon transport test. The radon transport test is performed with the off-line global tracer model TM2. The solid-body rotation test shows that none of the new schemes generates undershoot and overshoot and that all of them are mass conservative. Slopes and Second Moments both generate small undershoot and overshoot at all resolutions. The accuracy of the new and old schemes for rotation of a smooth profile is similar for the horizontal resolutions studied. Since the new schemes are slightly more diffusive than the old schemes, they perform worse for rotation of a cone. The radon test shows that the errors related to the numerical schemes are much smaller than other model errors. The main advantage of the new schemes is that they use 75% and 90% less memory than Slopes and Second Moments, respectively. At horizontal resolutions higher than 5° × 5° Split-us and Split-rg are the most efficient of the schemes in terms of cpu time. The new advection schemes are available through Internet.

  16. Numerical Experiments on Advective Transport in Large Three-Dimensional Discrete Fracture Networks

    NASA Astrophysics Data System (ADS)

    Makedonska, N.; Painter, S. L.; Karra, S.; Gable, C. W.

    2013-12-01

    Modeling of flow and solute transport in discrete fracture networks is an important approach for understanding the migration of contaminants in impermeable hard rocks such as granite, where fractures provide dominant flow and transport pathways. The discrete fracture network (DFN) model attempts to mimic discrete pathways for fluid flow through a fractured low-permeable rock mass, and may be combined with particle tracking simulations to address solute transport. However, experience has shown that it is challenging to obtain accurate transport results in three-dimensional DFNs because of the high computational burden and difficulty in constructing a high-quality unstructured computational mesh on simulated fractures. An integrated DFN meshing [1], flow, and particle tracking [2] simulation capability that enables accurate flow and particle tracking simulation on large DFNs has recently been developed. The new capability has been used in numerical experiments on advective transport in large DFNs with tens of thousands of fractures and millions of computational cells. The modeling procedure starts from the fracture network generation using a stochastic model derived from site data. A high-quality computational mesh is then generated [1]. Flow is then solved using the highly parallel PFLOTRAN [3] code. PFLOTRAN uses the finite volume approach, which is locally mass conserving and thus eliminates mass balance problems during particle tracking. The flow solver provides the scalar fluxes on each control volume face. From the obtained fluxes the Darcy velocity is reconstructed for each node in the network [4]. Velocities can then be continuously interpolated to any point in the domain of interest, thus enabling random walk particle tracking. In order to describe the flow field on fractures intersections, the control volume cells on intersections are split into four planar polygons, where each polygon corresponds to a piece of a fracture near the intersection line. Thus

  17. The Sensitivity of Model Ozone to Advective and Photochemical Processes in the High Latitude Winter Lower Stratosphere

    NASA Technical Reports Server (NTRS)

    Douglass, A.; Kawa, S. R.; Einaudi, Franco (Technical Monitor)

    2000-01-01

    Three dimensional chemistry and transport models (CTMs) contain a set of coupled continuity equations which describe the evolution of constituents such as ozone and other minor species which affect ozone. Both advection and photochemical processes contribute to constituent evolution, and a CTM provides a means to evaluate these contributions separately. Such evaluation is particularly useful when both terms are important to the modeled tendency. An example is the ozone tendency in the high latitude winter lower stratosphere, where advection tends to increase ozone, and catalytic processes involving chlorine radicals tend to decrease ozone. The Goddard three dimensional chemistry and transport model uses meteorological fields from the Goddard Earth Observing System Data Assimilation System, thus the modeled ozone evolution may reproduce the observed evolution and provide a test of the model representation of photochemical processes if the transport is shown to be modeled appropriately. We have investigated the model advection further using diabatic trajectory calculations. For long lived constituents such as N2O, the model field for a particular time on a potential temperature surface is compared with a field produced by calculating 15 day back trajectories for a fixed latitude longitude grid, and mapping model N2O at the terminus of the back trajectories onto the initial grid. This provides a quantitative means to evaluate two aspects of the CTM transport: one, the model horizontal gradient between middle latitudes and the polar vortex is compared with the gradient produced using the non-diffusive trajectory calculation; two, the model vertical advection, which is produced by the divergence of the horizontal winds, is compared with the vertical transport expected from diabatic cooling.

  18. Modeling velocity in gradient flows with coupled-map lattices with advection.

    PubMed

    Lind, Pedro G; Corte-Real, João; Gallas, Jason A C

    2002-07-01

    We introduce a simple model to investigate large scale behavior of gradient flows based on a lattice of coupled maps which, in addition to the usual diffusive term, incorporates advection, as an asymmetry in the coupling between nearest neighbors. This diffusive-advective model predicts traveling patterns to have velocities obeying the same scaling as wind velocities in the atmosphere, regarding the advective parameter as a sort of geostrophic wind. In addition, the velocity and wavelength of traveling wave solutions are studied. In general, due to the presence of advection, two regimes are identified: for strong diffusion the velocity varies linearly with advection, while for weak diffusion a power law is found with a characteristic exponent proportional to the diffusion.

  19. Renormalization group estimates of transport coefficients in the advection of a passive scalar by incompressible turbulence

    NASA Technical Reports Server (NTRS)

    Zhou, YE; Vahala, George

    1993-01-01

    The advection of a passive scalar by incompressible turbulence is considered using recursive renormalization group procedures in the differential sub grid shell thickness limit. It is shown explicitly that the higher order nonlinearities induced by the recursive renormalization group procedure preserve Galilean invariance. Differential equations, valid for the entire resolvable wave number k range, are determined for the eddy viscosity and eddy diffusivity coefficients, and it is shown that higher order nonlinearities do not contribute as k goes to 0, but have an essential role as k goes to k(sub c) the cutoff wave number separating the resolvable scales from the sub grid scales. The recursive renormalization transport coefficients and the associated eddy Prandtl number are in good agreement with the k-dependent transport coefficients derived from closure theories and experiments.

  20. An advective volume-balance model for flow in porous media

    NASA Astrophysics Data System (ADS)

    Malaga, Carlos; Mandujano, Francisco; Becerra, Julian

    2016-11-01

    Volume-balance models are used by petroleum engineers to simulate multiphase and multicomponent flow phenomena in porous media and the extraction process in oil reservoirs. In these models, mass conservation equations and Darcy's law are supplemented by a balance condition for the pore and fluid volumes. This provides a pressure equation suitable for simulating a compressible flow within a compressible solid matrix. Here we present an alternative interpretation of the volume-balance condition that includes the advective transport within a consolidated porous media. We obtain a modified equation for the time evolution of the pressure field. Preliminary numerical tests of phase separation due to gravity suggest the model reproduces qualitatively the physical phenomena. Fondo Sectorial CONACYT-SENER Grant Number 42536 (DGAJ-SPI-34-170412-217).

  1. Single-relaxation-time lattice Boltzmann scheme for advection-diffusion problems with large diffusion-coefficient heterogeneities and high-advection transport.

    PubMed

    Perko, Janez; Patel, Ravi A

    2014-05-01

    The paper presents an approach that extends the flexibility of the standard lattice Boltzmann single relaxation time scheme in terms of spatial variation of dissipative terms (e.g., diffusion coefficient) and stability for high Péclet mass transfer problems. Spatial variability of diffusion coefficient in SRT is typically accommodated through the variation of relaxation time during the collision step. This method is effective but cannot deal with large diffusion coefficient variations, which can span over several orders of magnitude in some natural systems. The approach explores an alternative way of dealing with large diffusion coefficient variations in advection-diffusion transport systems by introducing so-called diffusion velocity. The diffusion velocity is essentially an additional convective term that replaces variations in diffusion coefficients vis-à-vis a chosen reference diffusion coefficient which defines the simulation time step. Special attention is paid to the main idea behind the diffusion velocity formulation and its implementation into the lattice Boltzmann framework. Finally, the performance, stability, and accuracy of the diffusion velocity formulation are discussed via several advection-diffusion transport benchmark examples. These examples demonstrate improved stability and flexibility of the proposed scheme with marginal consequences on the numerical performance.

  2. In situ measurements of advective solute transport in permeable shelf sands

    NASA Astrophysics Data System (ADS)

    Reimers, Clare E.; Stecher, Hilmar A.; Taghon, Gary L.; Fuller, Charlotte M.; Huettel, Markus; Rusch, Antje; Ryckelynck, Natacha; Wild, Christian

    2004-01-01

    Solute transport rates within the uppermost 2 cm of a rippled continental shelf sand deposit, with a mean grain size of 400-500 μm and permeabilities of 2.0-2.4×10 -11 m 2, have been measured in situ by detecting the breakthrough of a pulse of iodide after its injection into the bottom water. These tracer experiments were conducted on the USA Middle Atlantic Bight shelf at a water depth of ˜13 m using a small tethered tripod that carried a close-up video camera, acoustic current meter, motorized 1.5 liter "syringe", and a microprofiling system for positioning and operating a solid-state voltammetric microelectrode. When triggered on shipboard, the syringe delivered a 0.21 M solution of potassium iodide and red dye through five nozzles positioned around and above the buried tip of the voltammetric sensor for 0.65-5 min. Bottom turbulence rapidly mixed and dispersed the tracer, which then was carried into the bed by interfacial water flows associated with ripple topography. The advective downward transport to the sensor tip was timed by a sequence of repetitive voltammetric scans. The distance-averaged vertical velocity, expressed as the depth of the sensor tip in the sand divided by the time to iodide breakthrough, was found to vary from 6 to 53 cm h -1 and generally to decrease with sediment depth. Because of episodic pumping and dispersion associated with the greatest 5% of wave heights and current speeds recorded, some concentration vs. time responses showed evidence of uneven solute migration. For reasons of mass balance, the advective flow field in the surface layers of permeable beds includes regions of water intrusion, horizontal pore-water flow and upwelling which also may explain some of the observed uneven migration. Pore-water advection was also evident in oxygen profiles measured before and after tracer injection with the voltammetric sensor. These profiles showed irregular distributions and oxygen penetration depths of 4-4.5 cm. Sand cores from the

  3. Exploration of POD-Galerkin Techniques for Developing Reduced Order Models of Reaction-Advection Equations

    DTIC Science & Technology

    2014-04-01

    downstream boundary (when needed) is obtained by extrapolation, taking into account the hyperbolic character of the equation . By separating the...for Developing Reduced Order Models of Reaction-Advection Equations 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) 5d. PROJECT...advection scalar equation is used as a representative equation to investigate the overall approach. Both linear and nonlinear model equations are

  4. Chaotic advection at the pore scale: Mechanisms, upscaling and implications for macroscopic transport

    NASA Astrophysics Data System (ADS)

    Lester, D. R.; Trefry, M. G.; Metcalfe, G.

    2016-11-01

    The macroscopic spreading and mixing of solute plumes in saturated porous media is ultimately controlled by processes operating at the pore scale. Whilst the conventional picture of pore-scale mechanical dispersion and molecular diffusion leading to persistent hydrodynamic dispersion is well accepted, this paradigm is inherently two-dimensional (2D) in nature and neglects important three-dimensional (3D) phenomena. We discuss how the kinematics of steady 3D flow at the pore scale generate chaotic advection-involving exponential stretching and folding of fluid elements-the mechanisms by which it arises and implications of microscopic chaos for macroscopic dispersion and mixing. Prohibited in steady 2D flow due to topological constraints, these phenomena are ubiquitous due to the topological complexity inherent to all 3D porous media. Consequently 3D porous media flows generate profoundly different fluid deformation and mixing processes to those of 2D flow. The interplay of chaotic advection and broad transit time distributions can be incorporated into a continuous-time random walk (CTRW) framework to predict macroscopic solute mixing and spreading. We show how these results may be generalised to real porous architectures via a CTRW model of fluid deformation, leading to stochastic models of macroscopic dispersion and mixing which both honour the pore-scale kinematics and are directly conditioned on the pore-scale architecture.

  5. A Streamline-Upwind Model for Filling Front Advection in Powder Injection Moulding

    NASA Astrophysics Data System (ADS)

    Larsen, Guillaume; Cheng, Zhi Qiang; Barriere, Thierry; Liu, Bao Sheng; Gelin, Jean-Claude

    2010-06-01

    The filling process of powder injection molding is modeled by the flows of two variably adjacent domains in the mold cavity. The feedstock is filled into the cavity while the air is expelled out by the injected feedstock [1]. Eulerian description is adopted. The filling patterns are determined by the solution of an advection equation, governed by the velocity field in both the feedstock flow and air flow [2]. In the real physics, the advance of filling front depends mainly on the flow of feedstock that locates behind the front. The flow of air in front of the injected material plays in fact no meaningful effect. However, the actual algorithm for solution of the advection equation takes equally the importance for both the flow of viscous feedstock and that of the slight air. Under such a condition, the injection flow of feedstock in simulation may be misdirected unrealistically by the velocity field in the air portion of the mold cavity. To correct this defect, an upwind scheme is proposed to reinforce the effect of upwind flow and reduce the effect of downstream flow. The present paper involves the investigation of an upwind algorithm for simulation of the filling state during powder injection molding. A Petrov-Galerkin upwind based method (SUPG) is adopted for numerical simulation of the transport equation instead of the Taylor-Galerkin method in previous work. In the proposed implementation of the Streamline-Upwind/Petrov-Galerkin (SUPG) approach. A stabilization method is used to prevent oscillations in the convection-dominated problems. It consists in the introduction of an artificial diffusion in streamline direction. Suitable modification of the test function is the important issue. It ensures the stable simulation of filling process and results in the more realistic prediction of filling patterns. The implementation of upwind scheme in mould filling state simulation, based on an advection equation and the whole velocity field of feedstock and air flow, makes

  6. User's guide to PHREEQC, a computer program for speciation, reaction-path, advective-transport, and inverse geochemical calculations

    USGS Publications Warehouse

    Parkhurst, D.L.

    1995-01-01

    PHREEQC is a computer program written in the C pwgranuning language that is designed to perform a wide variety of aqueous geochemical calculations. PHREEQC is based on an ion-association aqueous model and has capabilities for (1) speciation and saturation-index calculations, (2) reaction-path and advective-transport calculations involving specified irreversible reactions, mixing of solutions, mineral and gas equilibria surface-complex-ation reactions, and ion-exchange reactions, and (3) inverse modeling, which finds sets of mineral and gas mole transfers that account for composition differences between waters, within specified compositional uncertainties. PHREEQC is derived from the Fortran program PHREEQE, but it has been completely rewritten in C with the addition many new capabilities. New features include the capabilities to use redox couples to distribute redox elements among their valence states in speciation calculations; to model ion-exchange and surface-compiexation reactions; to model reactions with a fixed-pressure, multicomponent gas phase (that is, a gas bubble); to calculate the mass of water in the aqueous phase during reaction and transport calculations; to keep track of the moles of minerals present in the solid phases and determine antomaticaHy the thermodynamically stable phase assemblage; to simulate advective transport in combination with PHREEQC's reaction-modeling capability; and to make inverse modeling calculations that allow for uncertainties in the analytical data. The user interface is improved through the use of a simplified approach to redox reactions, which includes explicit mole-balance equations for hydrogen and oxygen; the use of a revised input that is modular and completely free format; and the use of mineral names and standard chemical symbolism rather than index numbers. The use of (2 eliminates nearly all limitations on army sizes, including numbers of elements, aqueous species, solutions, phases, and lengths of character

  7. Assessment of nitrate transport parameters using the advection-diffusion cell.

    PubMed

    Aljazzar, Taiseer; Al-Qinna, Mohammed

    2016-11-01

    This study aimed to better understand nitrate transport in the soil system in a part of the state of North Rhine-Westphalia, in Germany, and to aid in the development of groundwater protection plans. An advection-diffusion (AD) cell was used in a miscible displacement experiment setup to characterize nitrate transport in 12 different soil samples from the study area. The three nitrate sorption isotherms were tested to define the exact nitrate interaction with the soil matrix. Soils varied in their properties which in its turn explain the variations in nitrate transport rates. Soil texture and organic matter content showed to have the most important effect on nitrate recovery and retardation. The miscible displacement experiment indicated a decrease in retardation by increasing sand fraction, and an increase in retardation by increasing soil organic matter content. Soil samples with high sand fractions (up to 94 %) exhibited low nitrate sorption capacity of less than 10 %, while soils with high organic matter content showed higher sorption of about 30 %. Based on parameterization for nitrate transport equation, the pore water velocity for both sandy and loamy soils were significantly different (P < 0.001). Pore water velocity in sandy soil (about 4 × 10(-3) m/s) was about 100 to 1000 larger than in loamy soils (8.7 × 10(-5) m/s). On the other hand, the reduction in nitrate transport in soils associated with high organic matter was due to fine pore pathways clogged by fine organic colloids. It is expected that the existing micro-phobicity increased the nitrate recovery from 9 to 32 % resulting in maximum diffusion rates of about 3.5 × 10(-5) m/s(2) in sandy soils (sample number CS-04) and about 1.4 × 10(-7) m/s(2) in silt loam soils (sample number FS-02).

  8. Solving the advection-diffusion equations in biological contexts using the cellular Potts model

    NASA Astrophysics Data System (ADS)

    Dan, Debasis; Mueller, Chris; Chen, Kun; Glazier, James A.

    2005-10-01

    The cellular Potts model (CPM) is a robust, cell-level methodology for simulation of biological tissues and morphogenesis. Both tissue physiology and morphogenesis depend on diffusion of chemical morphogens in the extra-cellular fluid or matrix (ECM). Standard diffusion solvers applied to the cellular potts model use finite difference methods on the underlying CPM lattice. However, these methods produce a diffusing field tied to the underlying lattice, which is inaccurate in many biological situations in which cell or ECM movement causes advection rapid compared to diffusion. Finite difference schemes suffer numerical instabilities solving the resulting advection-diffusion equations. To circumvent these problems we simulate advection diffusion within the framework of the CPM using off-lattice finite-difference methods. We define a set of generalized fluid particles which detach advection and diffusion from the lattice. Diffusion occurs between neighboring fluid particles by local averaging rules which approximate the Laplacian. Directed spin flips in the CPM handle the advective movement of the fluid particles. A constraint on relative velocities in the fluid explicitly accounts for fluid viscosity. We use the CPM to solve various diffusion examples including multiple instantaneous sources, continuous sources, moving sources, and different boundary geometries and conditions to validate our approximation against analytical and established numerical solutions. We also verify the CPM results for Poiseuille flow and Taylor-Aris dispersion.

  9. The effects of temperature and motility on the advective transport of a deep subsurface bacteria through saturated sediment

    SciTech Connect

    McCaulou, Douglas Ray

    1993-01-01

    Replicate column experiments were done to quantify the effects of temperature and bacterial motility on advective transport through repacked, but otherwise unaltered, natural aquifer sediment. The bacteria used in this study, A0500, was a flagellated, spore-forming rod isolated from the deep subsurface at DOE`s Savannah River Laboratory. Motility was controlled by turning on flagellar metabolism at 18°C but off at 40°α), estimated using a steady-state filtration model. The observed greater microsphere removal at the higher temperature agreed with the physical-chemical model, but bacteria removal at 18{degrees}C was only half that at 4°C. The sticking efficiency for non-motile A0500 (4°C) was over three times that of the motile A0500 (18°C), 0.073 versus 0.022 respectively. Analysis of complete breakthrough curves using a non-steady, kinetically limited, transport model to estimate the time scales of attachment and detachment suggested that motile A 0500 bacteria traveled twice as far as non-motile A 0500 bacteria before becoming attached. Once attached, non-motile colloids detached on the time scale of 9 to 17 days. The time scale for detachment of motile A0500 bacteria was shorter, 4 to 5 days. Results indicate that bacterial attachment was reversible and detachment was enhanced by bacterial motifity. The kinetic energy of bacterial motility changed the attachment-detachment kinetics in favor of the detached state. The chemical factors responsible for the enhanced transport are not known. However, motility may have caused weakly held bacteria to detach from the secondary minimum, and possibly from the primary minimum, as described by DLVO theory.

  10. Ion-exchange reactions on clay minerals coupled with advection/dispersion processes. Application to Na+/Ca2+ exchange on vermiculite: Reactive-transport modeling, batch and stirred flow-through reactor experiments

    NASA Astrophysics Data System (ADS)

    Tertre, E.; Hubert, F.; Bruzac, S.; Pacreau, M.; Ferrage, E.; Prêt, D.

    2013-07-01

    The present study aims at testing the validity of using an Na+/Ca2+ ion-exchange model, derived from batch data to interpret experimental Ca2+-for-Na+ exchange breakthrough curves obtained on vermiculite (a common swelling clay mineral in surface environments). The ion-exchange model was constructed considering the multi-site nature of the vermiculite surface as well as the exchange of all aqueous species (Mg2+ derived from the dissolution of the solid and H+). The proposed ion-exchange model was then coupled with a transport model, and the predicted breakthrough curves were compared with the experimental ones obtained using a well stirred flow-through reactor. For a given solute residence time in the reactor (typically 50 min), our thermodynamic model based on instantaneous equilibrium was found to accurately reproduce several of the experimental breakthrough curves, depending on the Na+ and Ca2+ concentrations of the influents pumped through the reactor. However the model failed to reproduce experimental breakthrough curves obtained at high flow rates and low chemical gradient between the exchanger phase and the solution. An alternative model based on a hybrid equilibrium/kinetic approach was thus used and allowed predicting experimental data. Based on these results, we show that a simple parameter can be used to differentiate between thermodynamic and kinetic control of the exchange reaction with water flow. The results of this study are relevant for natural systems where two aquatic environments having contrasted chemistries interact. Indeed, the question regarding the attainment of a full equilibrium in such a system during the contact time of the aqueous phase with the particle/colloid remains most often open. In this context, we show that when a river (a flow of fresh water) encounters marine colloids, a systematic full equilibrium can be assumed (i.e., the absence of kinetic effects) when the residence time of the solute in 1 m3 of the system is ⩾6200 h.

  11. An approximate calculation of advective gas-phase transport of 14C at Yucca Mountain, Nevada

    NASA Astrophysics Data System (ADS)

    Knapp, R. B.

    1990-01-01

    A quasilinear partial differential equation, which describes gas-phase transport of a 14C kinematic wave through a porous medium, is derived, its sensitivity to system variables is analyzed and it is applied to one possible release scenarion at the porposed Yucca Mountain, Nevada high-level radioactive waste repository. Advection, isotope exchange between CO 2 in a flowing gas phase and HCO 3- in a static aqueous phase, and radioactive decay are incorporated. The governing equation is solved analytically by the method of characteristics. The mass fraction of 14C in the gas phase,X 14g, is controlled by radioactive decay. The relatively long half-line of 14C, about 5720 years, and the relatively shallow proposed burial depth of the radioactive waste, about 350m, requires significant retardation of the 14C wave velocity for significant reduction in X 14g. 14C wave velocity is most sensitive to temperature and pH which control the distribution of total carbon between gas and liquid phase; the greater the partitioning of carbon into the liquid phase, the greater the retardation of the 14C wave velocity and the greater the ultimate reduction in X 14g from initial conditions. Partitioning of total carbon into the liquid phase is greatest at low temperatures, < 100° C, and high pH values, > 8. Increasing water saturation also tends to retard 14C wave velocity but to a lesser extent. The governing equation has been applied using conditions that may possibly occur at the proposed Yucca Mountain repository. Calculations indicate that the 14C wave takes about 5900 years to reach the surface with a X 14g equal to 25 ppm. Diffusion and dispersion are not of major importance for these conditions. These calculations are approximate due to the number of assumptions involved. Discharge of 14C into the gas before the selected time would accelerate wave arrival and increase the amount of 14C reaching the surface.

  12. Pointwise interactions of finite element modeling of advection-diffusion equations

    SciTech Connect

    Yeh, G.T.

    1984-07-01

    Pointwise iteration techniques including successive under-relaxation (SUR), Gauss-Seidel (G-S), and successive over-relaxation (SOR) schemes, are applied to advection-diffusion equations to derive the matrix equation with finite element methods. These schemes are tested using two simple examples for which analytical solutions are available so that numerical results can be checked to ensure code consistency. Numerical experiments indicate that the iteration schemes, if convergent, produce almost identical solutions as those obtained by the direct elimination scheme. For diffusion dominant transport, all three iteration schemes generate convergent computations. However, for advection-diffusion equally dominant or advection dominant transport, only SUR and G-S schemes yield convergent calculations, the SOR scheme leads to divergent computations. Pointwise iteration schemes offer substantial savings in central process unit (CPU) memory over the direct elimination scheme, even for the small, two-dimensional verification example, without complicating the programming efforts and, in the meantime, keeps the CPU time comparable. A realistic, hypothetical problem is used to demonstrate the applicability and versatility of pointwise iterations and direct elimination schemes. The saving in CPU memory using the pointwise iterations is more than tenfold that using the direct elimination solution for this hypothetical problem. The saving in CPU time is even better, more than 40 fold.

  13. Modeling the advection of discontinuous quantities in Geophysical flows using Particle Level Sets

    NASA Astrophysics Data System (ADS)

    Aleksandrov, V.; Samuel, H.; Evonuk, M.

    2010-12-01

    Advection is one of the major processes that commonly acts on various scales in nature (core formation, mantle convective stirring, multi-phase flows in magma chambers, salt diapirism ...). While this process can be modeled numerically by solving conservation equations, various geodynamic scenarios involve advection of quantities with sharp discontinuities. Unfortunately, in these cases modeling numerically pure advection becomes very challenging, in particular because sharp discontinuities lead to numerical instabilities, which prevent the local use of high order numerical schemes. Several approaches have been used in computational geodynamics in order to overcome this difficulty, with variable amounts of success. Despite the use of correcting filters or non-oscillatory, shock-preserving schemes, Eulerian (fixed grid) techniques generally suffer from artificial numerical diffusion. Lagrangian approaches (dynamic grids or particles) tend to be more popular in computational geodynamics because they are not prone to excessive numerical diffusion. However, these approaches are generally computationally expensive, especially in 3D, and can suffer from spurious statistical noise. As an alternative to these aforementioned approaches, we have applied a relatively recent Particle Level set method [Enright et al., 2002] for modeling advection of quantities with the presence of sharp discontinuities. We have tested this improved method, which combines the best of Eulerian and Lagrangian approaches, against well known benchmarks and classical Geodynamic flows. In each case the Particle Level Set method accuracy equals or is better than other Eulerian and Lagrangian methods, and leads to significantly smaller computational cost, in particular in three-dimensional flows, where the reduction of computational time for modeling advection processes is most needed.

  14. Analysis of steady-state flow and advective transport in the eastern Snake River Plain aquifer system, Idaho

    USGS Publications Warehouse

    Ackerman, D.J.

    1995-01-01

    Quantitative estimates of ground-water flow directions and traveltimes for advective flow were developed for the regional aquifer system of the eastern Snake River Plain, Idaho. The work included: (1) descriptions of compartments in the aquifer that function as intermediate and regional flow systems, (2) descriptions of pathlines for flow originating at or near the water table, and (3) quantitative estimates of traveltimes for advective transport originating at or near the water table. A particle-tracking postprocessing program was used to compute pathlines on the basis of output from an existing three-dimensional steady-state flow model. The flow model uses 1980 conditions to approximate average annual conditions for 1950-80. The advective transport model required additional information about the nature of flow across model boundaries, aquifer thickness, and porosity. Porosity of two types of basalt strata has been reported for more than 1,500 individual cores from test holes, wells, and outcrops near the south side of the Idaho National Engineering Laboratory. The central 80 percent of samples had porosities of 0.08 to 0.25, the central 50 percent of samples, O. 11 to 0.21. Calibration of the model involved choosing a value for porosity that yielded the best solution. Two radiologic contaminants, iodine-129 and tritium, both introduced to the flow system about 40 years ago, are relatively conservative tracers. Iodine- 129 was considered to be more useful because of a lower analytical detection limit, longer half-life, and longer flow path. The calibration value for porosity was 0.21. Most flow in the aquifer is contained within a regional-scale compartment and follows paths that discharge to the Snake River downstream from Milner Dam. Two intermediate-scale compartments exist along the southeast side of the aquifer and near Mud Lake.One intermediate-scale compartment along the southeast side of the aquifer discharges to the Snake River near American Fails

  15. High-resolution stochastic downscaling of climate models: simulating wind advection, cloud cover and precipitation

    NASA Astrophysics Data System (ADS)

    Peleg, Nadav; Fatichi, Simone; Burlando, Paolo

    2015-04-01

    A new stochastic approach to generate wind advection, cloud cover and precipitation fields is presented with the aim of formulating a space-time weather generator characterized by fields with high spatial and temporal resolution (e.g., 1 km x 1 km and 5 min). Its use is suitable for stochastic downscaling of climate scenarios in the context of hydrological, ecological and geomorphological applications. The approach is based on concepts from the Advanced WEather GENerator (AWE-GEN) presented by Fatichi et al. (2011, Adv. Water Resour.), the Space-Time Realizations of Areal Precipitation model (STREAP) introduced by Paschalis et al. (2013, Water Resour. Res.), and the High-Resolution Synoptically conditioned Weather Generator (HiReS-WG) presented by Peleg and Morin (2014, Water Resour. Res.). Advection fields are generated on the basis of the 500 hPa u and v wind direction variables derived from global or regional climate models. The advection velocity and direction are parameterized using Kappa and von Mises distributions respectively. A random Gaussian fields is generated using a fast Fourier transform to preserve the spatial correlation of advection. The cloud cover area, total precipitation area and mean advection of the field are coupled using a multi-autoregressive model. The approach is relatively parsimonious in terms of computational demand and, in the context of climate change, allows generating many stochastic realizations of current and projected climate in a fast and efficient way. A preliminary test of the approach is presented with reference to a case study in a complex orography terrain in the Swiss Alps.

  16. Preliminary evaluation of the importance of existing hydraulic-head observation locations to advective-transport predictions, Death Valley regional flow system, California and Nevada

    SciTech Connect

    Hill, M.C.; Ely, D.M.; Tiedeman, C.R.; O'Brien, G.M.; D'Agnese, F.A.; Faunt, C.C.

    2001-08-01

    When a model is calibrated by nonlinear regression, calculated diagnostic statistics and measures of uncertainty provide a wealth of information about many aspects of the system. This report presents a method of ranking the likely importance of existing observation locations using measures of prediction uncertainty. It is suggested that continued monitoring is warranted at more important locations, and unwarranted or less warranted at less important locations. The report develops the methodology and then demonstrates it using the hydraulic-head observation locations of a three-layer model of the Death Valley regional flow system (DVRFS). The predictions of interest are subsurface transport from beneath Yucca Mountain and 14 underground Test Area (UGTA) sites. The advective component of transport is considered because it is the component most affected by the system dynamics represented by the regional-scale model being used. The problem is addressed using the capabilities of the U.S. Geological Survey computer program MODFLOW-2000, with its ADVective-Travel Observation (ADV) Package, and an additional computer program developed for this work.

  17. ADVECTIVE TRANSPORT OF INTERSTELLAR PLASMA INTO THE HELIOSPHERE ACROSS THE RECONNECTING HELIOPAUSE

    SciTech Connect

    Strumik, M.; Grzedzielski, S.; Czechowski, A.; Macek, W. M.; Ratkiewicz, R.

    2014-02-10

    We discuss results of magnetohydrodynamical model simulations of plasma dynamics in the proximity of the heliopause (HP). The model is shown to fit details of the magnetic field variations observed by the Voyager 1 spacecraft during the transition from the heliosphere to the local interstellar medium (LISM). We propose an interpretation of magnetic field structures observed by Voyager 1 in terms of fine-scale physical processes. Our simulations reveal an effective transport mechanism of relatively dense LISM plasma across the reconnecting HP into the heliosphere. The mechanism is associated with annihilation of magnetic sectors in the heliospheric plasma near the HP.

  18. A particle-mesh algorithm for advection-reaction-diffusion equations with applications to plankton modeling

    NASA Astrophysics Data System (ADS)

    Paparella, F.; Oliveri, F.

    2009-04-01

    The interplay of advection, reaction and diffusion terms in ADR equations is a rather difficult one to be modeled numerically. The kind of spurious oscillations that is usually harmless for non-reacting scalars is often amplified without bounds by reaction terms. Furthermore, in most biogeochimical applications, such as mesoscale or global-scale plankton modeling, the diffusive fluxes may be smaller than the numerical ones. Inspired by the particle-mesh methods used by cosmologists, we propose to discretize on a grid only the diffusive term of the equation, and solve the advection-reaction terms as ordinary differential equations along the characteristic lines. Diffusion happens by letting the concentration field carried by each particle to relax towards the diffusive field known on the grid, without redistributing the particles. This method, in the limit of vanishing diffusivity and for a fixed mesh size, recovers the advection-reaction solution with no numerical diffusion. We show some example numerical solutions of the ADR equations stemming from a simple predator-prey model.

  19. Temporal signatures of advective versus diffusive radon transport at a geothermal zone in Central Nepal.

    PubMed

    Richon, Patrick; Perrier, Frédéric; Koirala, Bharat Prasad; Girault, Frédéric; Bhattarai, Mukunda; Sapkota, Soma Nath

    2011-02-01

    Temporal variation of radon-222 concentration was studied at the Syabru-Bensi hot springs, located on the Main Central Thrust zone in Central Nepal. This site is characterized by several carbon dioxide discharges having maximum fluxes larger than 10 kg m(-2) d(-1). Radon concentration was monitored with autonomous Barasol™ probes between January 2008 and November 2009 in two small natural cavities with high CO(2) concentration and at six locations in the soil: four points having a high flux, and two background reference points. At the reference points, dominated by radon diffusion, radon concentration was stable from January to May, with mean values of 22 ± 6.9 and 37 ± 5.5 kBq m(-3), but was affected by a large increase, of about a factor of 2 and 1.6, respectively, during the monsoon season from June to September. At the points dominated by CO(2) advection, by contrast, radon concentration showed higher mean values 39.0 ± 2.6 to 78 ± 1.4 kBq m(-3), remarkably stable throughout the year with small long-term variation, including a possible modulation of period around 6 months. A significant difference between the diffusion dominated reference points and the advection-dominated points also emerged when studying the diurnal S(1) and semi-diurnal S(2) periodic components. At the advection-dominated points, radon concentration did not exhibit S(1) or S(2) components. At the reference points, however, the S(2) component, associated with barometric tide, could be identified during the dry season, but only when the probe was installed at shallow depth. The S(1) component, associated with thermal and possibly barometric diurnal forcing, was systematically observed, especially during monsoon season. The remarkable short-term and long-term temporal stability of the radon concentration at the advection-dominated points, which suggests a strong pressure source at depth, may be an important asset to detect possible temporal variations associated with the

  20. Demonstration of microbial transport into the capillary fringe via advection from below the water table

    NASA Astrophysics Data System (ADS)

    Dunn, Andrea M.; Silliman, Stephen E.; Dhamwichukorn, Srisuda; Kulpa, Charles F.

    2005-05-01

    A laboratory experiment is used to provide preliminary evidence that microbes can be advected into the capillary fringe from the region below the water table under steady flow conditions. A flow cell was packed so as to contain both a region for which pore-water pressure was greater than atmospheric pressure (termed 'below the water table') and a region, where the pore-water pressure was less than atmospheric with the pores essentially saturated with water (termed the 'capillary fringe'). Steady flow was then established through maintaining a hydraulic gradient across the medium. Green fluorescent protein (GFP) transformed bacteria ( E. coli JM109) were used to visualize migration of bacteria from below the water table into the capillary fringe. These transformed bacteria fluoresce brightly and readily when excited by standard UV light (395 nm) in 100 mL LB medium with 100 μg/mL ampicillin. The concentrations of bacterial inoculum and oxygen were adjusted to ensure GFPuv expression at a large scale. Results demonstrated that microbes can move into the capillary fringe from below the water table under horizontal hydraulic gradients. Motion from the capillary fringe into the region below the water table was also observed as was the absence of advection through regions of entrapped air below the water table.

  1. Investigating the impact of advective and diffusive controls in solute transport on geoelectrical data

    NASA Astrophysics Data System (ADS)

    Wheaton, Daniel D.; Singha, Kamini

    2010-09-01

    Multiple types of physical heterogeneity have been suggested to explain anomalous solute transport behavior, yet determining exactly what controls transport at a given site is difficult from concentration histories alone. Differences in timing between co-located fluid and bulk apparent electrical conductivity data have previously been used to estimate solute mass transfer rates between mobile and less-mobile domains; here, we consider if this behavior can arise from other types of heterogeneity. Numerical models are used to investigate the electrical signatures associated with large-scale hydraulic conductivity heterogeneity and small-scale dual-domain mass transfer, and address issues regarding the scale of the geophysical measurement. We examine the transport behavior of solutes with and without dual-domain mass transfer, in: 1) a homogeneous medium, 2) a discretely fractured medium, and 3) a hydraulic conductivity field generated with sequential Gaussian simulation. We use the finite-element code COMSOL Multiphysics to construct two-dimensional cross-sectional models and solve the coupled flow, transport, and electrical conduction equations. Our results show that both large-scale heterogeneity and subscale heterogeneity described by dual-domain mass transfer produce a measurable hysteresis between fluid and bulk apparent electrical conductivity, indicating a lag between electrical conductivity changes in the mobile and less-mobile domains of an aquifer, or mass transfer processes, at some scale. The shape and magnitude of the observed hysteresis is controlled by the spatial distribution of hydraulic heterogeneity, mass transfer rate between domains, and the ratio of mobile to immobile porosity. Because the rate of mass transfer is related to the inverse square of a diffusion length scale, our results suggest that the shape of the hysteresis curve is indicative of the length scale over which mass transfer is occurring. We also demonstrate that the difference in

  2. An adaptive, Courant-number-dependent implicit scheme for vertical advection in oceanic modeling

    NASA Astrophysics Data System (ADS)

    Shchepetkin, Alexander F.

    2015-07-01

    An oceanic model with an Eulerian vertical coordinate and an explicit vertical advection scheme is subject to the Courant-Friedrichs-Lewy (CFL) limitation. Depending on the horizontal grid spacing, the horizontal-to-vertical grid resolution ratio and the flow pattern this limitation may easily become the most restrictive factor in choosing model time step, with the general tendency to become more severe as horizontal resolution becomes finer. Using terrain-following coordinate makes local vertical grid spacing depend on topography, ultimately resulting in very fine resolution in shallow areas in comparison with other models, z-coordinate, and isopycnic, which adds another factor in restricting time step. At the same time, terrain-following models are models of choice for the fine-resolution coastal modeling, often including tides interacting with topography resulting in large amplitude baroclinic vertical motions. In this article we examine the possibility of mitigating vertical CFL restriction, while at the same time avoiding numerical inaccuracies associated with standard implicit advection schemes. In doing so we design a combined algorithm which acts like a high-order explicit scheme when Courant numbers are small enough to allow explicit method (which is usually the case throughout the entire modeling domain except just few "hot spots"), while at the same time has the ability to adjust itself toward implicit scheme should it became necessary to avoid stability limitations. This is done in a seamless manner by continuously adjusting weighting between explicit and implicit components.

  3. Permeability generation and resetting of tracers during metamorphic fluid flow: implications for advection-dispersion models

    NASA Astrophysics Data System (ADS)

    Cartwright, Ian

    Advection-dispersion fluid flow models implicitly assume that the infiltrating fluid flows through an already fluid-saturated medium. However, whether rocks contain a fluid depends on their reaction history, and whether any initial fluid escapes. The behaviour of different rocks may be illustrated using hypothetical marble compositions. Marbles with diverse chemistries (e.g. calcite + dolomite + quartz) are relatively reactive, and will generally produce a fluid during heating. By contrast, marbles with more restricted chemistries (e.g. calcite + quartz or calcite-only) may not. If the rock is not fluid bearing when fluid infiltration commences, mineralogical reactions may produce a reaction-enhanced permeability in calcite + dolomite + quartz or calcite + quartz, but not in calcite-only marbles. The permeability production controls the pattern of mineralogical, isotopic, and geochemical resetting during fluid flow. Tracers retarded behind the mineralogical fronts will probably be reset as predicted by the advection-dispersion models; however, tracers that are expected to be reset ahead of the mineralogical fronts cannot progress beyond the permeability generating reaction. In the case of very unreactive lithologies (e.g. pure calcite marbles, cherts, and quartzites), the first reaction to affect the rocks may be a metasomatic one ahead of which there is little pervasive resetting of any tracer. Centimetre-scale layering may lead to the formation of self-perpetuating fluid channels in rocks that are not fluid saturated due to the juxtaposition of reactants. Such layered rocks may show patterns of mineralogical resetting that are not predicted by advection-dispersion models. Patterns of mineralogical and isotopic resetting in marbles from a number of terrains, for example: Chillagoe, Marulan South, Reynolds Range (Australia); Adirondack Mountains, Old Woman Mountains, Notch Peak (USA); and Stephen Cross Quarry (Canada) vary as predicted by these models.

  4. Advective excess Ba transport as shown from sediment and trap geochemical signatures

    SciTech Connect

    Fagel, N.; Andre, L.; Dehairs, F.

    1999-08-01

    The authors report the results of a geochemical study of sediment and trap material. Major and trace elements (Zr, Ba, rare earth elements, and Th) were analyzed on bulk sedimentary material collected along the NE Atlantic margin. The aim is to test the widespread use of Ba-barite as a proxy for paleoproductivity in a continental margin area. This environment is of great interest because atmospheric-oceanic exchanges are important. In sediments, the geochemical signatures remain close to an upper crust reference, with flat shale-normalized rare earth elements patterns and constant elementary ratios. The calculated biogenic fraction of Ba or excess Ba (20--45%) remains lower than the excess Ba record in trap material (80--99%). The evolution of the geochemical signature along the margin reflects variable dilution of a detrital Post Archean Australian Shale-like component by a biogenic carbonaceous seawater-derived component. The trap material displays a wide range of variation in its trace element content (e.g., Ba {approximately}150--3,000 ppm, Zr {approximately}2--100 ppm), except for the abyssal site, which is characterized by constant signature. In the two other sites, all of the trace element contents increase with water depth and present pronounced seasonal changes at each sampled water depth. The amount of excess Ba also increases in the deepest traps, and its evolution throughout the year mimics the change of the other analyzed trace elements. In contrast, its relationships with particulate organic carbon are not obvious. In terms of fluxes, two periods of enhanced excess Ba fluxes are observed: (1) excess Ba flux increases with the detrital-like elements like Th especially during winter, and (2) excess Ba flux is enhanced without any change for the other trace elements during spring. To explain the first case, a supply through lateral advection is proposed. Such transient input of significant excess Ba flux will have a great impact on the yearly averaged

  5. Design and analysis of ADER-type schemes for model advection-diffusion-reaction equations

    NASA Astrophysics Data System (ADS)

    Busto, S.; Toro, E. F.; Vázquez-Cendón, M. E.

    2016-12-01

    We construct, analyze and assess various schemes of second order of accuracy in space and time for model advection-diffusion-reaction differential equations. The constructed schemes are meant to be of practical use in solving industrial problems and are derived following two related approaches, namely ADER and MUSCL-Hancock. Detailed analysis of linear stability and local truncation error are carried out. In addition, the schemes are implemented and assessed for various test problems. Empirical convergence rate studies confirm the theoretically expected accuracy in both space and time.

  6. Computation of traveling wave fronts for a nonlinear diffusion-advection model.

    PubMed

    Mansour, M B A

    2009-01-01

    This paper utilizes a nonlinear reaction-diffusion-advection model for describing the spatiotemporal evolution of bacterial growth. The traveling wave solutions of the corresponding system of partial differential equations are analyzed. Using two methods, we then find such solutions numerically. One of the methods involves the traveling wave equations and solving an initial-value problem, which leads to accurate computations of the wave profiles and speeds. The second method is to construct time-dependent solutions by solving an initial-moving boundary-value problem for the PDE system, showing another approximation for such wave solutions.

  7. On a free boundary problem for a reaction-diffusion-advection logistic model in heterogeneous environment

    NASA Astrophysics Data System (ADS)

    Monobe, Harunori; Wu, Chang-Hong

    2016-12-01

    In this paper, we investigate a reaction-diffusion-advection equation with a free boundary which models the spreading of an invasive species in one-dimensional heterogeneous environments. We assume that the species has a tendency to move upward along the resource gradient in addition to random dispersal, and the spreading mechanism of species is determined by a Stefan-type condition. Investigating the sign of the principal eigenvalue of the associated linearized eigenvalue problem, under certain conditions we obtain the sharp criteria for spreading and vanishing via system parameters. Also, we establish the long-time behavior of the solution and the asymptotic spreading speed. Finally, some biological implications are discussed.

  8. Advective-diffusive/dispersive transport of chemically reacting species in hydrothermal systems. Final report, FY83-85

    SciTech Connect

    Lichtner, P.C.; Helgeson, H.C.

    1986-06-20

    A general formulation of multi-phase fluid flow coupled to chemical reactions was developed based on a continuum description of porous media. A preliminary version of the computer code MCCTM was constructed which implemented the general equations for a single phase fluid. The computer code MCCTM incorporates mass transport by advection-diffusion/dispersion in a one-dimensional porous medium coupled to reversible and irreversible, homogeneous and heterogeneous chemical reactions. These reactions include aqueous complexing, oxidation/reduction reactions, ion exchange, and hydrolysis reactions of stoichiometric minerals. The code MCCTM uses a fully implicit finite difference algorithm. The code was tested against analytical calculations. Applications of the code included investigation of the propagation of sharp chemical reaction fronts, metasomatic alteration of microcline at elevated temperatures and pressures, and ion-exchange in a porous column. Finally numerical calculations describing fluid flow in crystalline rock in the presence of a temperature gradient were compared with experimental results for quartzite.

  9. Modelling sensitivities to mixing and advection in a sill-basin estuarine system

    NASA Astrophysics Data System (ADS)

    Soontiens, Nancy; Allen, Susan E.

    2017-04-01

    This study investigates the sensitivity of a high resolution regional ocean model to several choices in mixing and advection. The oceanographic process examined is a deep water renewal event in the Juan de Fuca Strait-Strait of Georgia sill-basin estuarine system located on the west coast of North America. Previous observational work has shown that the timing of the renewal events is linked to the spring/neap tidal cycle, and in turn, is sensitive to the amount of vertical mixing induced by tidal currents interacting with sills and complicated bathymetry. It is found that the model's representation of deep water renewal is relatively insensitive to several mixing choices, including the vertical turbulence closure and direction of lateral mixing. No significant difference in deep or intermediate salinity was found between cases that used k - ɛ versus k - ω closures and isoneutral versus horizontal lateral mixing. Modifications that had a stronger effect included those that involved advection such as modifying the salinity of the open boundary conditions which supply the source waters for the renewal event. The strongest impact came from the removal of the Hollingsworth instability, a kinetic energy sink in the energy-enstrophy discretization of the momentum equations. A marked improvement to the salinity of the deep water renewal suggests that the removal of the Hollingsworth instability will correct a fresh drift in the deep and intermediate waters in an operational version of this model.

  10. Helical turbulent Prandtl number in the A model of passive vector advection

    NASA Astrophysics Data System (ADS)

    Hnatič, M.; Zalom, P.

    2016-11-01

    Using the field theoretic renormalization group technique in the two-loop approximation, turbulent Prandtl numbers are obtained in the general A model of passive vector advected by fully developed turbulent velocity field with violation of spatial parity introduced via the continuous parameter ρ ranging from ρ =0 (no violation of spatial parity) to |ρ |=1 (maximum violation of spatial parity). Values of A represent a continuously adjustable parameter which governs the interaction structure of the model. In nonhelical environments, we demonstrate that A is restricted to the interval -1.723 ≤A ≤2.800 (rounded to 3 decimal places) in the two-loop order of the field theoretic model. However, when ρ >0.749 (rounded to 3 decimal places), the restrictions may be removed, which means that presence of helicity exerts a stabilizing effect onto the possible stationary regimes of the system. Furthermore, three physically important cases A ∈{-1 ,0 ,1 } are shown to lie deep within the allowed interval of A for all values of ρ . For the model of the linearized Navier-Stokes equations (A =-1 ) up to date unknown helical values of the turbulent Prandtl number have been shown to equal 1 regardless of parity violation. Furthermore, we have shown that interaction parameter A exerts strong influence on advection-diffusion processes in turbulent environments with broken spatial parity. By varying A continuously, we explain high stability of the kinematic MHD model (A =1 ) against helical effects as a result of its proximity to the A =0.912 (rounded to 3 decimal places) case where helical effects are completely suppressed. Contrary, for the physically important A =0 model, we show that it lies deep within the interval of models where helical effects cause the turbulent Prandtl number to decrease with |ρ | . We thus identify internal structure of interactions given by the parameter A , and not the vector character of the admixture itself being the dominant factor influencing

  11. Helical turbulent Prandtl number in the A model of passive vector advection.

    PubMed

    Hnatič, M; Zalom, P

    2016-11-01

    Using the field theoretic renormalization group technique in the two-loop approximation, turbulent Prandtl numbers are obtained in the general A model of passive vector advected by fully developed turbulent velocity field with violation of spatial parity introduced via the continuous parameter ρ ranging from ρ=0 (no violation of spatial parity) to |ρ|=1 (maximum violation of spatial parity). Values of A represent a continuously adjustable parameter which governs the interaction structure of the model. In nonhelical environments, we demonstrate that A is restricted to the interval -1.723≤A≤2.800 (rounded to 3 decimal places) in the two-loop order of the field theoretic model. However, when ρ>0.749 (rounded to 3 decimal places), the restrictions may be removed, which means that presence of helicity exerts a stabilizing effect onto the possible stationary regimes of the system. Furthermore, three physically important cases A∈{-1,0,1} are shown to lie deep within the allowed interval of A for all values of ρ. For the model of the linearized Navier-Stokes equations (A=-1) up to date unknown helical values of the turbulent Prandtl number have been shown to equal 1 regardless of parity violation. Furthermore, we have shown that interaction parameter A exerts strong influence on advection-diffusion processes in turbulent environments with broken spatial parity. By varying A continuously, we explain high stability of the kinematic MHD model (A=1) against helical effects as a result of its proximity to the A=0.912 (rounded to 3 decimal places) case where helical effects are completely suppressed. Contrary, for the physically important A=0 model, we show that it lies deep within the interval of models where helical effects cause the turbulent Prandtl number to decrease with |ρ|. We thus identify internal structure of interactions given by the parameter A, and not the vector character of the admixture itself being the dominant factor influencing diffusion-advection

  12. The prediction of sea-surface temperature variations by means of an advective mixed-layer ocean model

    NASA Technical Reports Server (NTRS)

    Atlas, R. M.

    1976-01-01

    An advective mixed layer ocean model was developed by eliminating the assumption of horizontal homogeneity in an already existing mixed layer model, and then superimposing a mean and anomalous wind driven current field. This model is based on the principle of conservation of heat and mechanical energy and utilizes a box grid for the advective part of the calculation. Three phases of experiments were conducted: evaluation of the model's ability to account for climatological sea surface temperature (SST) variations in the cooling and heating seasons, sensitivity tests in which the effect of hypothetical anomalous winds was evaluated, and a thirty-day synoptic calculation using the model. For the case studied, the accuracy of the predictions was improved by the inclusion of advection, although nonadvective effects appear to have dominated.

  13. Modeling flow and solute transport in irrigation furrows

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper presents an internally coupled flow and solute transport model for free-draining irrigation furrows. Furrow hydraulics is simulated with a numerical zero-inertia model and solute transport is computed with a model based on a numerical solution of the cross-section averaged advection-dispe...

  14. Preliminary evaluation of the importance of existing hydraulic-head observation locations to advective-transport predictions, Death Valley regional flow system, California and Nevada

    USGS Publications Warehouse

    Hill, Mary C.; Ely, D. Matthew; Tiedeman, Claire R.; O'Brien, Grady M.; D'Agnese, Frank A.; Faunt, Claudia C.

    2001-01-01

    When a model is calibrated by nonlinear regression, calculated diagnostic statistics and measures of uncertainty provide a wealth of information about many aspects of the system. This report presents a method of ranking the likely importance of existing observation locations using measures of prediction uncertainty. It is suggested that continued monitoring is warranted at more important locations, and unwarranted or less warranted at less important locations. The report develops the methodology and then demonstrates it using the hydraulic-head observation locations of a three-layer model of the Death Valley regional flow system. The predictions of interest are subsurface transport from beneath Yucca Mountain and 14 Underground Test Areas. The advective component of transport is considered because it is the component most affected by the system dynamics represented by the scale model being used. The problem is addressed using the capabilities of the U.S. Geological Survey computer program MODFLOW-2000, with its ADVective-Travel Observation (ADV) Package, and an additional computer program developed for this work. The methods presented in this report are used in three ways. (1) The ratings for individual observations are obtained by manipulating the measures of prediction uncertainty, and do not involve recalibrating the model. In this analysis, observation locations are each omitted individually and the resulting increase in uncertainty in the predictions is calculated. The uncertainty is quantified as standard deviations on the simulated advective transport. The increase in uncertainty is quantified as the percent increase in the standard deviations caused by omitting the one observation location from the calculation of standard deviations. In general, observation locations associated with larger increases are rated as more important. (2) Ratings for largely geographically based groups are obtained using a straightforward extension of the method used for

  15. Smoothed particle hydrodynamics model for Landau-Lifshitz-Navier-Stokes and advection-diffusion equations.

    PubMed

    Kordilla, Jannes; Pan, Wenxiao; Tartakovsky, Alexandre

    2014-12-14

    We propose a novel smoothed particle hydrodynamics (SPH) discretization of the fully coupled Landau-Lifshitz-Navier-Stokes (LLNS) and stochastic advection-diffusion equations. The accuracy of the SPH solution of the LLNS equations is demonstrated by comparing the scaling of velocity variance and the self-diffusion coefficient with kinetic temperature and particle mass obtained from the SPH simulations and analytical solutions. The spatial covariance of pressure and velocity fluctuations is found to be in a good agreement with theoretical models. To validate the accuracy of the SPH method for coupled LLNS and advection-diffusion equations, we simulate the interface between two miscible fluids. We study formation of the so-called "giant fluctuations" of the front between light and heavy fluids with and without gravity, where the light fluid lies on the top of the heavy fluid. We find that the power spectra of the simulated concentration field are in good agreement with the experiments and analytical solutions. In the absence of gravity, the power spectra decay as the power -4 of the wavenumber-except for small wavenumbers that diverge from this power law behavior due to the effect of finite domain size. Gravity suppresses the fluctuations, resulting in much weaker dependence of the power spectra on the wavenumber. Finally, the model is used to study the effect of thermal fluctuation on the Rayleigh-Taylor instability, an unstable dynamics of the front between a heavy fluid overlaying a light fluid. The front dynamics is shown to agree well with the analytical solutions.

  16. Smoothed particle hydrodynamics model for Landau-Lifshitz-Navier-Stokes and advection-diffusion equations

    SciTech Connect

    Kordilla, Jannes; Pan, Wenxiao Tartakovsky, Alexandre

    2014-12-14

    We propose a novel smoothed particle hydrodynamics (SPH) discretization of the fully coupled Landau-Lifshitz-Navier-Stokes (LLNS) and stochastic advection-diffusion equations. The accuracy of the SPH solution of the LLNS equations is demonstrated by comparing the scaling of velocity variance and the self-diffusion coefficient with kinetic temperature and particle mass obtained from the SPH simulations and analytical solutions. The spatial covariance of pressure and velocity fluctuations is found to be in a good agreement with theoretical models. To validate the accuracy of the SPH method for coupled LLNS and advection-diffusion equations, we simulate the interface between two miscible fluids. We study formation of the so-called “giant fluctuations” of the front between light and heavy fluids with and without gravity, where the light fluid lies on the top of the heavy fluid. We find that the power spectra of the simulated concentration field are in good agreement with the experiments and analytical solutions. In the absence of gravity, the power spectra decay as the power −4 of the wavenumber—except for small wavenumbers that diverge from this power law behavior due to the effect of finite domain size. Gravity suppresses the fluctuations, resulting in much weaker dependence of the power spectra on the wavenumber. Finally, the model is used to study the effect of thermal fluctuation on the Rayleigh-Taylor instability, an unstable dynamics of the front between a heavy fluid overlaying a light fluid. The front dynamics is shown to agree well with the analytical solutions.

  17. Smoothed particle hydrodynamics model for Landau-Lifshitz Navier-Stokes and advection-diffusion equations

    SciTech Connect

    Kordilla, Jannes; Pan, Wenxiao; Tartakovsky, Alexandre M.

    2014-12-14

    We propose a novel Smoothed Particle Hydrodynamics (SPH) discretization of the fully-coupled Landau-Lifshitz-Navier-Stokes (LLNS) and advection-diffusion equations. The accuracy of the SPH solution of the LLNS equations is demonstrated by comparing the scaling of velocity variance and self-diffusion coefficient with kinetic temperature and particle mass obtained from the SPH simulations and analytical solutions. The spatial covariance of pressure and velocity fluctuations are found to be in a good agreement with theoretical models. To validate the accuracy of the SPH method for the coupled LLNS and advection-diffusion equations, we simulate the interface between two miscible fluids. We study the formation of the so-called giant fluctuations of the front between light and heavy fluids with and without gravity, where the light fluid lays on the top of the heavy fluid. We find that the power spectra of the simulated concentration field is in good agreement with the experiments and analytical solutions. In the absence of gravity the the power spectra decays as the power -4 of the wave number except for small wave numbers which diverge from this power law behavior due to the effect of finite domain size. Gravity suppresses the fluctuations resulting in the much weaker dependence of the power spectra on the wave number. Finally the model is used to study the effect of thermal fluctuation on the Rayleigh-Taylor instability, an unstable dynamics of the front between a heavy fluid overlying a light fluid. The front dynamics is shown to agree well with the analytical solutions.

  18. A validated 2-D diffusion-advection model for prediction of drift from ground boom sprayers

    NASA Astrophysics Data System (ADS)

    Baetens, K.; Ho, Q. T.; Nuyttens, D.; De Schampheleire, M.; Melese Endalew, A.; Hertog, M. L. A. T. M.; Nicolaï, B.; Ramon, H.; Verboven, P.

    Correct field drift prediction is a key element in environmental risk assessment of spraying applications. A reduced order drift prediction model based on the diffusion-advection equation is presented. It allows fast assessment of the drift potential of specific ground boom applications under specific environmental wind conditions that obey the logarithmic wind profile. The model was calibrated based on simulations with a validated Computational Fluid Dynamics (CFD) model. Validation of both models against 38 carefully conducted field experiments is successfully performed for distances up to 20 m from the field edge, for spraying on flat pasture land. The reduced order model succeeded in correct drift predictions for different nozzle types, wind velocities, boom heights and spray pressures. It used 4 parameters representing the physical aspects of the drift cloud; the height of the cloud at the field edge, the mass flux crossing the field edge, the settling velocity of the droplets and the turbulence. For the parameter set and range considered, it is demonstrated for the first time that the effect of the droplet diameter distribution of the different nozzle types on the amount of deposition spray drift can be evaluated by a single parameter, i.e., the volume fraction of droplets with a diameter smaller than 191 μm. The reduced order model can be solved more than 4 orders of magnitude faster than the comprehensive CFD model.

  19. Advective heat transport associated with regional Earth degassing in central Apennine (Italy)

    NASA Astrophysics Data System (ADS)

    Chiodini, G.; Cardellini, C.; Caliro, S.; Chiarabba, C.; Frondini, F.

    2013-07-01

    In this work we show that the main springs of the central Apennine transport a total amount of heat of ˜2.2×109 J s-1. Most of this heat (57%) is the result of geothermal warming while the remaining 43% is due to gravitational potential energy dissipation. This result indicates that a large area of the central Apennines is very hot with heat flux values >300 mW m-2. These values are higher than those measured in the magmatic and famously geothermal provinces of Tuscany and Latium and about 1/3 of the total heat discharged at Yellowstone. This finding is surprising because the central Apennines have been thought to be a relatively cold area. Translated by CO2 rich fluids, this heat anomaly suggests the existence of a thermal source such as a large magmatic intrusion at depth. Recent tomographic images of the area support the presence of such an intrusion visible as a broad negative velocity anomaly in seismic waves. Our results indicate that the thermal regime of tectonically active areas of the Earth, where meteoric waters infiltrate and deeply circulate, should be revised on the basis of mass and energy balances of the groundwater systems.

  20. Glacial-interglacial 3D ice sheet modelling of Antarctica; Validation by age-isotope advection

    NASA Astrophysics Data System (ADS)

    Springer, S. R.; Padman, L.; Dinniman, M. S.

    2014-12-01

    Wintertime sea ice extent around Antarctica has shown a positive trend during at least the past decade. The maximum northward expansion of sea ice is likely to be limited by the strong ocean temperature gradients associated with fronts of the Antarctic Circumpolar Current (ACC). The ACC is, however, very dynamically unstable, with mesoscale eddies accounting for a large fraction of the variance in surface currents and sea surface temperature (SST). We combine satellite-observed sea-ice concentration, SST, and geostrophic eddy velocities to explore the hypothesis that dynamic and thermodynamic interactions between mesoscale eddies and sea ice exert an additional influence on the location of the winter sea ice margin. Advancing sea ice develops meridional deviations at horizontal scales of ~100 km, lengthening the perimeter of the ice-covered area by 30-70%. In many cases, this "scalloping" of the ice margin can be attributed to advection by eddy velocities. The effect varies regionally, depending on the proximity of the ice edge to the ACC. From the Amundsen Sea eastward through the Drake Passage the southern limit of eddy variability coincides with the northernmost extent of sea ice, and scalloping is common. By deforming the ice margin, eddies increase the potential for ice-edge melting and destruction by Southern Ocean surface wave action, while eddy-driven ice advection modifies the mean thermodynamic exchanges responsible for mass loss from the base of the ice pack. We use observations and models to estimate sea-ice loss caused by eddy/ice interactions.

  1. A nonlocal and periodic reaction-diffusion-advection model of a single phytoplankton species.

    PubMed

    Peng, Rui; Zhao, Xiao-Qiang

    2016-02-01

    In this article, we are concerned with a nonlocal reaction-diffusion-advection model which describes the evolution of a single phytoplankton species in a eutrophic vertical water column where the species relies solely on light for its metabolism. The new feature of our modeling equation lies in that the incident light intensity and the death rate are assumed to be time periodic with a common period. We first establish a threshold type result on the global dynamics of this model in terms of the basic reproduction number R0. Then we derive various characterizations of R0 with respect to the vertical turbulent diffusion rate, the sinking or buoyant rate and the water column depth, respectively, which in turn give rather precise conditions to determine whether the phytoplankton persist or become extinct. Our theoretical results not only extend the existing ones for the time-independent case, but also reveal new interesting effects of the modeling parameters and the time-periodic heterogeneous environment on persistence and extinction of the phytoplankton species, and thereby suggest important implications for phytoplankton growth control.

  2. Melt production by viscous dissipation: Role of heat advection by Magma transport

    SciTech Connect

    Feigenson, M.D.; Spera, F.J.

    1980-02-01

    An energy conservation equation is formulated that balances the heat generated by viscous dissipation in a peridotite simultaneously undergoing partial fusion and penetrative constant shear stress deformation with the heat removed by mobilization and ascent of basaltic magma from the region undergoing deformation. The solution of this parameterized energy equation gives the volume fraction of melt (theta) as a function of time (t) after the initiation of deformation. A stability analysis of the conservation equation shows that stable (theta<100%) or unstable (theta..-->..infinity) solutions exist depending on the magnitude of two dimensionless parameters K/sub 1//K/sub 2/ and K/sub 3/. For geologically reasonable values of K/sub 2//K/sub 2/ and K/sub 3/, the analysis indicates that peridotitic thermo-mechanical systems undergoing penetrative deformation at constant shear stress show a two-stage history. An early stage of growth where theta increases monotonically on a 2 to 3 m.y. time scale eventually is replaced by a steady s ate regime (constant theta). Typical values of theta lie in the range 3 to 5 volume percent; melting of peridotite to the extent of 20--30% appears to be precluded by this model.

  3. An innovative lattice Boltzmann model for simulating Michaelis-Menten-based diffusion-advection kinetics and its application within a cartilage cell bioreactor.

    PubMed

    Moaty Sayed, A A; Hussein, M A; Becker, T

    2010-04-01

    Lattice Boltzmann models (LBM) are rapidly showing their ability to simulate a lot of fluid dynamics problems that previously required very complex approaches. This study presents a LBM for simulating diffusion-advection transport of substrate in a 2-D laminar flow. The model considers the substrate influx into a set of active cells placed inside the flow field. A new innovative method was used to simulate the cells activity using the LBM by means of Michaelis-Menten kinetics. The model is validated with some numerical benchmark problems and proved highly accurate results. After validation the model was used to simulate the transport of oxygen substrates that diffuse in water to feed a set of active cartilage cells inside a new designed bioreactor.

  4. Advection and dispersion heat transport mechanisms in the quantification of shallow geothermal resources and associated environmental impacts.

    PubMed

    Alcaraz, Mar; García-Gil, Alejandro; Vázquez-Suñé, Enric; Velasco, Violeta

    2016-02-01

    Borehole Heat Exchangers (BHEs) are increasingly being used to exploit shallow geothermal energy. This paper presents a new methodology to provide a response to the need for a regional quantification of the geothermal potential that can be extracted by BHEs and the associated environmental impacts. A set of analytical solutions facilitates accurate calculation of the heat exchange of BHEs with the ground and its environmental impacts. For the first time, advection and dispersion heat transport mechanisms and the temporal evolution from the start of operation of the BHE are taken into account in the regional estimation of shallow geothermal resources. This methodology is integrated in a GIS environment, which facilitates the management of input and output data at a regional scale. An example of the methodology's application is presented for Barcelona, in Spain. As a result of the application, it is possible to show the strengths and improvements of this methodology in the development of potential maps of low temperature geothermal energy as well as maps of environmental impacts. The minimum and maximum energy potential values for the study site are 50 and 1800 W/m(2) for a drilled depth of 100 m, proportionally to Darcy velocity. Regarding to thermal impacts, the higher the groundwater velocity and the energy potential, the higher the size of the thermal plume after 6 months of exploitation, whose length ranges from 10 to 27 m long. A sensitivity analysis was carried out in the calculation of heat exchange rate and its impacts for different scenarios and for a wide range of Darcy velocities. The results of this analysis lead to the conclusion that the consideration of dispersion effects and temporal evolution of the exploitation prevent significant differences up to a factor 2.5 in the heat exchange rate accuracy and up to several orders of magnitude in the impacts generated.

  5. Modeling of Convective-Stratiform Precipitation Processes: Sensitivity to Partitioning Methods and Numerical Advection Schemes

    NASA Technical Reports Server (NTRS)

    Lang, Steve; Tao, W.-K.; Simpson, J.; Ferrier, B.; Einaudi, Franco (Technical Monitor)

    2001-01-01

    Six different convective-stratiform separation techniques, including a new technique that utilizes the ratio of vertical and terminal velocities, are compared and evaluated using two-dimensional numerical simulations of a tropical [Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment (TOGA COARE)] and midlatitude continental [Preliminary Regional Experiment for STORM-Central (PRESTORM)] squall line. The simulations are made using two different numerical advection schemes: 4th order and positive definite advection. Comparisons are made in terms of rainfall, cloud coverage, mass fluxes, apparent heating and moistening, mean hydrometeor profiles, CFADs (Contoured Frequency with Altitude Diagrams), microphysics, and latent heating retrieval. Overall, it was found that the different separation techniques produced results that qualitatively agreed. However, the quantitative differences were significant. Observational comparisons were unable to conclusively evaluate the performance of the techniques. Latent heating retrieval was shown to be sensitive to the use of separation technique mainly due to the stratiform region for methods that found very little stratiform rain. The midlatitude PRESTORM simulation was found to be nearly invariant with respect to advection type for most quantities while for TOGA COARE fourth order advection produced numerous shallow convective cores and positive definite advection fewer cells that were both broader and deeper penetrating above the freezing level.

  6. NONUNIFORM AND UNSTEADY SOLUTE TRANSPORT IN FURROW IRRRIGATION: I. MODEL DEVELOPMENT

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A model for solving a cross-section-averaged Advection-Dispersion Equation (ADE) was developed to simulate the transport of fertilizer in furrow irrigation. The advection and dispersion processes were solved separately at each time step by implementing a method of characteristics with cubic spline i...

  7. Project Fog Drops 5. Task 1: A numerical model of advection fog. Task 2: Recommendations for simplified individual zero-gravity cloud physics experiments

    NASA Technical Reports Server (NTRS)

    Rogers, C. W.; Eadie, W. J.; Katz, U.; Kocmond, W. C.

    1975-01-01

    A two-dimensional numerical model was used to investigate the formation of marine advection fog. The model predicts the evolution of potential temperature, horizontal wind, water vapor content, and liquid water content in a vertical cross section of the atmosphere as determined by vertical turbulent transfer and horizontal advection, as well as radiative cooling and drop sedimentation. The model is designed to simulate the formation, development, or dissipation of advection fog in response to transfer of heat and moisture between the atmosphere and the surface as driven by advection over horizontal discontinuities in the surface temperature. Results from numerical simulations of advection fog formation are discussed with reference to observations of marine fog. A survey of candidate fog or cloud microphysics experiments which might be performed in the low gravity environment of a shuttle-type spacecraft in presented. Recommendations are given for relatively simple experiments which are relevent to fog modification problems.

  8. A global spectral element model for poisson equations and advective flow over a sphere

    NASA Astrophysics Data System (ADS)

    Mei, Huan; Wang, Faming; Zeng, Zhong; Qiu, Zhouhua; Yin, Linmao; Li, Liang

    2016-03-01

    A global spherical Fourier-Legendre spectral element method is proposed to solve Poisson equations and advective flow over a sphere. In the meridional direction, Legendre polynomials are used and the region is divided into several elements. In order to avoid coordinate singularities at the north and south poles in the meridional direction, Legendre-Gauss-Radau points are chosen at the elements involving the two poles. Fourier polynomials are applied in the zonal direction for its periodicity, with only one element. Then, the partial differential equations are solved on the longitude-latitude meshes without coordinate transformation between spherical and Cartesian coordinates. For verification of the proposed method, a few Poisson equations and advective flows are tested. Firstly, the method is found to be valid for test cases with smooth solution. The results of the Poisson equations demonstrate that the present method exhibits high accuracy and exponential convergence. Highprecision solutions are also obtained with near negligible numerical diffusion during the time evolution for advective flow with smooth shape. Secondly, the results of advective flow with non-smooth shape and deformational flow are also shown to be reasonable and effective. As a result, the present method is proved to be capable of solving flow through different types of elements, and thereby a desirable method with reliability and high accuracy for solving partial differential equations over a sphere.

  9. A SIS reaction-diffusion-advection model in a low-risk and high-risk domain

    NASA Astrophysics Data System (ADS)

    Ge, Jing; Kim, Kwang Ik; Lin, Zhigui; Zhu, Huaiping

    2015-11-01

    A simplified SIS model is proposed and investigated to understand the impact of spatial heterogeneity of environment and advection on the persistence and eradication of an infectious disease. The free boundary is introduced to model the spreading front of the disease. The basic reproduction number associated with the diseases in the spatial setting is introduced. Sufficient conditions for the disease to be eradicated or to spread are given. Our result shows that if the spreading domain is high-risk at some time, the disease will continue to spread till the whole area is infected; while if the spreading domain is low-risk, the disease may be vanishing or keep spreading depending on the expanding capability and the initial number of the infective individuals. The spreading speeds are also given when spreading happens, numerical simulations are presented to illustrate the impacts of the advection and the expanding capability on the spreading fronts.

  10. Modeling transportation of efavirenz: inference on possibility of mixed modes of transportation and kinetic solubility.

    PubMed

    Nemaura, Tafireyi

    2015-01-01

    Understanding drug transportation mechanisms in the human body is of paramount importance in modeling Pharmacokinetic-Pharmacodynamic relationships. This work gives a novel general model of efavirenz transportation projections based on concentrations simulated from patients on a dose of 600 mg. The work puts forward a proposition that transportation can wholly be modeled by concentration and time in a uniform volumetric space. Furthermore, movement entities are used to inform the state of "kinetic solubility" of a solution. There is use of Ricker's model, and forms of the Hill's equation in modeling transportation. Characterization on the movement rates of solution particle are suggested in relation to advection rate of solution particle. At turning points on the transportation rate of solution particle vs. concentration curve, a suggestion of possibly change of dominance in the mode of transportation and saturation is made. There are four movement rates postulated at primary micro-level transportation, that are attributed to convection, diffusion [passive transportation (EI )] and energy dependent system transportation (ED ) in relation to advection. Furthermore, a new parameter is introduced which is defined as an advection rate constant of solution particle. It is postulated to be dependent on two rate constants of solution particle, that is a convection rate constant of solution particle and a saturable transportation rate constant of solution particle. At secondary micro-level transportation, the results show convection as sum of advection and saturable transportation. The kinetics of dissolution of efavirenz in the solution space is postulated. Relatively, a good level of kinetics of dissolution is projected in the concentration region 0 - 32.82 μg/ml.

  11. Escarpment evolution on high-elevation rifted margins: Insights derived from a surface processes model that combines diffusion, advection and reaction

    NASA Technical Reports Server (NTRS)

    Kooi, Henk; Beaumont, Christopher

    1994-01-01

    Experiments with a surface processes model of large-scale (1-1000 km) long-term (1-100 m.y.) erosional denudation are used to establish the controls on the evolution of a model escarpment that is related to the rifting of a continent. The mdoel describes changes in topographic form as a result of sumultaneous short- and long-range mass transport representing hillslope (diffusive) processes and fluvial transport (advection), repsectively. Fluvial entrainment is modeled as a first-order kinetic reaction which reflects the erodibility of the substrate, and therefore the fluvial system is not necessarily carrying at capacity. One dimensional and planform models demonstrate that the principal controls on the evolution of an initially steep model escarpment are (1) antecedent topography/drainage; (2) the timesale (or equivalently a length scale) in the fluvial entrainment reaction; (3) the flexural response of the lithosphere to denudation; and (4) the relative efficiencies of the short- and long-range transport processes. When rainfall and substrate lithology are uniform, a significant amount of discharge draining over the escarpment top causes it to degrade. Only when the top of the model escarpment coincides with a drainage divide can escarpment retreat occur for these conditions. An additional requirement for retreat of a model escarpment without decline is a long reaction time scale for fluvial entrainment. This corresponds to a substrate that is hard to detach by flucial erosion, and therefore to fluvial erosion that is not transport limited. Coninuous backtilting of an escarpment due ot flexural isostatic uplift in response to denudational unloading helps maintain the scarp top as a divide. It is essntial if the escarpment gradient is to be preserved during retreat in a uniform lithology. Low flexural rigidieties propote steep and slowly retreating escarpments. For given rainfall and substrate conditions, the morphology of a retraeating model escarpment is

  12. One-dimensional advection diffusion modeling of upwelled hyporheic stream temperature along Deer Creek, Vina, California

    NASA Astrophysics Data System (ADS)

    Butler, N. L.; Hunt, J. R.; Tompkins, M. R.

    2011-12-01

    Hyporheic exchange can locally mitigate thermal stress caused by high water temperatures by upwelling water cooler than ambient stream temperatures and thus providing thermal refuge for critical cold water organisms like salmonids. Ten hyporheic exchange locations were identified by dye tracer experiments along a 16 km stretch of Deer Creek near Vina, California. Four months of continuous temperature measurements were made in the late summer of 2005 at each downwelling and upwelling location and revealed upwelled temperatures that were lagged in time and damped in amplitude. Upwelling hyporheic temperatures that could provide thermal refuge were observed in seven of the ten temperature records. This data was modeled by an analytical one-dimensional advection-diffusion equation solution using subsurface water velocity and the hydrodynamic dispersivity fitting parameters. At each location variations in upwelling temperature are explained by changing subsurface water velocities and flow pathways. The lag time in hyporheic heat flow ranged from a few hours to 44 hours over distances of 15 to 76 meters. The daily stream temperature variation was on the order of 10°C, which was reduced to 1 to 8°C in the upwelling hyporheic flow. At four locations, there was evidence that changes in stream flow produced changes in the amplitude and phase of the upwelling hyporheic water temperature by altering both the subsurface water velocity and hydrodynamic dispersivity. At two locations, additional cold water refuge was created by decreases in surface water flow because it reduced the estimated subsurface water velocity increasing the lag time between the peak surface water and subsurface water temperatures. Increases in surface water flow increased the dispersivity at three locations providing more cold water refuge by reducing the amplitude of the upwelling hyporheic temperature. Such changes alter thermal refuge for salmonids placing a new emphasis on managing surface water

  13. Pathogen and chemical transport in the karst limestone of the Biscayne aquifer: 2. Chemical retention from diffusion and slow advection

    USGS Publications Warehouse

    Shapiro, A.M.; Renken, R.A.; Harvey, R.W.; Zygnerski, M.R.; Metge, D.W.

    2008-01-01

    A tracer experiment, using a nonreactive tracer, was conducted as part of an investigation of the potential for chemical and pathogen migration to public supply wells that draw groundwater from the highly transmissive karst limestone of the Biscayne aquifer in southeastern Florida. The tracer was injected into the formation over approximately 1 h, and its recovery was monitored at a pumping well approximately 100 m from the injection well. The first detection of the tracer occurred after approximately 5 h, and the peak concentration occurred at about 8 h after the injection. The tracer was still detected in the production well more than 6 days after injection, and only 42% of the tracer mass was recovered. It is hypothesized that a combination of chemical diffusion and slow advection resulted in significant retention of the tracer in the formation, despite the high transmissivity of the karst limestone. The tail of the breakthrough curve exhibited a straight-line behavior with a slope of -2 on a log-log plot of concentration versus time. The -2 slope is hypothesized to be a function of slow advection, where the velocities of flow paths are hypothesized to range over several orders of magnitude. The flow paths having the slowest velocities result in a response similar to chemical diffusion. Chemical diffusion, due to chemical gradients, is still ongoing during the declining limb of the breakthrough curve, but this process is dwarfed by the magnitude of the mass flux by slow advection.

  14. A Nonlinear Multigrid Solver for an Atmospheric General Circulation Model Based on Semi-Implicit Semi-Lagrangian Advection of Potential Vorticity

    NASA Technical Reports Server (NTRS)

    McCormick, S.; Ruge, John W.

    1998-01-01

    This work represents a part of a project to develop an atmospheric general circulation model based on the semi-Lagrangian advection of potential vorticity (PC) with divergence as the companion prognostic variable.

  15. Wind tunnel measurements of scale-by-scale energy transfer, dissipation, advection and production/transport in equilibrium and nonequilibrium decaying turbulence

    NASA Astrophysics Data System (ADS)

    Valente, Pedro; Vassilicos, Christos

    2012-11-01

    The cornerstone assumption that Cɛ ≡ ɛL /u3 ~ constant was found to breakdown in certain nonequilibrium regions of decaying grid-generated turbulence with wide power-law near -5/3 spectra where the behaviour of Cɛ is, instead, very close to Cɛ ~ ReL- 1 (Valente & Vassilicos, 2012 [Phys. Rev. Lett. 108, 214503]). We investigate nonequilibrium turbulence by measuring with two cross wire anemometers the downstream evolution of the scale-by-scale energy transfer, dissipation, advection, production and transport in the lee of a square-mesh grid and compare with a region of equilibrium turbulence. For the nonequilibrium case it is shown that the production and transport terms are negligible for scales smaller than about a third of L. For both cases it is shown that the peak of the scale-by-scale energy transfer scales as u3 / L which is the expected behaviour for equilibrium turbulence. However, for the nonequilibrium case this implies an imbalance between the energy transfer to the small scales and the dissipation. This imbalance is reflected on the small-scale advection which becomes larger in proportion to the maximum energy transfer as the turbulence decays whereas it stays proportionally constant in the equilibrium case. P. V. acknowledges the financial support from Fundação para a Ciência e a Tecnologia (SFRH/BD/61223/2009, cofinanced by POPH/FSE).

  16. Stochastic Langevin Model for Flow and Transport in Porous Media

    SciTech Connect

    Tartakovsky, Alexandre M.; Tartakovsky, Daniel M.; Meakin, Paul

    2008-07-25

    A new stochastic Lagrangian model for fluid flow and transport in porous media is described. The fluid is represented by particles whose flow and dispersion in a continuous porous medium is governed by a Langevin equation. Changes in the properties of the fluid particles (e.g. the solute concentration) due to molecular diffusion is governed by the advection-diffusion equation. The separate treatment of advective and diffusive mixing in the stochastic model has an advantage over the classical advection-dispersion theory, which uses a single effective diffusion coefficient (the dispersion coefficient) to describe both types of mixing leading to over-prediction of mixing induced effective reaction rates. The stochastic model predicts much lower reaction product concentrations in mixing induced reactions. In addition the dispersion theory predicts more stable fronts (with a higher effective fractal dimension) than the stochastic model during the growth of Rayleigh-Taylor instabilities.

  17. Improvement of the semi-Lagrangian advection scheme in the GRAPES model: Theoretical analysis and idealized tests

    NASA Astrophysics Data System (ADS)

    Huang, Bo; Chen, Dehui; Li, Xingliang; Li, Chao

    2014-05-01

    The Global/Regional Assimilation and PrEdiction System (GRAPES) is the new-generation numerical weather prediction (NWP) system developed by the China Meteorological Administration. It is a fully compressible non-hydrostatical global/regional unified model that uses a traditional semi-Lagrangian advection scheme with cubic Lagrangian interpolation (referred to as the SL_CL scheme). The SL_CL scheme has been used in many operational NWP models, but there are still some deficiencies, such as the damping effects due to the interpolation and the relatively low accuracy. Based on Reich's semi-Lagrangian advection scheme (referred to as the R2007 scheme), the Re_R2007 scheme that uses the low- and high-order B-spline function for interpolation at the departure point, is developed in this paper. One- and two-dimensional idealized tests in the rectangular coordinate system with uniform grid cells were conducted to compare the Re_R2007 scheme and the SL_CL scheme. The numerical results showed that: (1) the damping effects were remarkably reduced with the Re_R2007 scheme; and (2) the normalized errors of the Re_R2007 scheme were about 7.5 and 3 times smaller than those of the SL_CL scheme in one- and two-dimensional tests, respectively, indicating the higher accuracy of the Re_R2007 scheme. Furthermore, two solid-body rotation tests were conducted in the latitude-longitude spherical coordinate system with nonuniform grid cells, which also verified the Re_R2007 scheme's advantages. Finally, in comparison with other global advection schemes, the Re_R2007 scheme was competitive in terms of accuracy and flow independence. An encouraging possibility for the application of the Re_R2007 scheme to the GRAPES model is provided.

  18. Quantifying errors in trace species transport modeling

    PubMed Central

    Prather, Michael J.; Zhu, Xin; Strahan, Susan E.; Steenrod, Stephen D.; Rodriguez, Jose M.

    2008-01-01

    One expectation when computationally solving an Earth system model is that a correct answer exists, that with adequate physical approximations and numerical methods our solutions will converge to that single answer. With such hubris, we performed a controlled numerical test of the atmospheric transport of CO2 using 2 models known for accurate transport of trace species. Resulting differences were unexpectedly large, indicating that in some cases, scientific conclusions may err because of lack of knowledge of the numerical errors in tracer transport models. By doubling the resolution, thereby reducing numerical error, both models show some convergence to the same answer. Now, under realistic conditions, we identify a practical approach for finding the correct answer and thus quantifying the advection error. PMID:19066224

  19. Concentration polarization, surface currents, and bulk advection in a microchannel

    NASA Astrophysics Data System (ADS)

    Nielsen, Christoffer P.; Bruus, Henrik

    2014-10-01

    We present a comprehensive analysis of salt transport and overlimiting currents in a microchannel during concentration polarization. We have carried out full numerical simulations of the coupled Poisson-Nernst-Planck-Stokes problem governing the transport and rationalized the behavior of the system. A remarkable outcome of the investigations is the discovery of strong couplings between bulk advection and the surface current; without a surface current, bulk advection is strongly suppressed. The numerical simulations are supplemented by analytical models valid in the long channel limit as well as in the limit of negligible surface charge. By including the effects of diffusion and advection in the diffuse part of the electric double layers, we extend a recently published analytical model of overlimiting current due to surface conduction.

  20. Modeling breakup and relaxation of Newtonian droplets using the advected phase-field approach

    NASA Astrophysics Data System (ADS)

    Beaucourt, J.; Biben, T.; Leyrat, A.; Verdier, C.

    2007-02-01

    The relaxation and breakup of Newtonian droplets is considered using the advected field approach. This method allows one to follow the deformation of interfaces using an order parameter field [Biben , Europhys. Lett. 63, 623 (2003)] based on a Ginzburg-Landau equation. Using this method, it is possible to follow the breakup of droplets and stability curves can be obtained in both two- and three-dimensional shear and elongational flows. Finally, relaxation of a droplet is considered, following the application of an elongational flow. The results are compared with previous experimental data [Ha and Leal, Phys. Fluids 13, 1568 (2001)], and are found to be in satisfactory agreement. The method is general enough to be applied to other non-Newtonian fluids, such as Oldroyd-B fluids or viscoplastic materials.

  1. Using a Gas-Phase Tracer Test to Characterize the Impact of Landfill Gas Generation on Advective-Dispersive Transport of VOCs in the Vadose Zone

    PubMed Central

    Monger, Gregg R.; Duncan, Candice Morrison; Brusseau, Mark L.

    2015-01-01

    A gas-phase tracer test (GTT) was conducted at a landfill in Tucson, AZ, to help elucidate the impact of landfill gas generation on the transport and fate of chlorinated aliphatic volatile organic contaminants (VOCs). Sulfur hexafluoride (SF6) was used as the non-reactive gas tracer. Gas samples were collected from a multiport monitoring well located 15.2 m from the injection well, and analyzed for SF6, CH4, CO2, and VOCs. The travel times determined for SF6 from the tracer test are approximately two to ten times smaller than estimated travel times that incorporate transport by only gas-phase diffusion. In addition, significant concentrations of CH4 and CO2 were measured, indicating production of landfill gas. Based on these results, it is hypothesized that the enhanced rates of transport observed for SF6 are caused by advective transport associated with landfill gas generation. The rates of transport varied vertically, which is attributed to multiple factors including spatial variability of water content, refuse mass, refuse permeability, and gas generation. PMID:26380532

  2. Using a Gas-Phase Tracer Test to Characterize the Impact of Landfill Gas Generation on Advective-Dispersive Transport of VOCs in the Vadose Zone.

    PubMed

    Monger, Gregg R; Duncan, Candice Morrison; Brusseau, Mark L

    2014-12-01

    A gas-phase tracer test (GTT) was conducted at a landfill in Tucson, AZ, to help elucidate the impact of landfill gas generation on the transport and fate of chlorinated aliphatic volatile organic contaminants (VOCs). Sulfur hexafluoride (SF6) was used as the non-reactive gas tracer. Gas samples were collected from a multiport monitoring well located 15.2 m from the injection well, and analyzed for SF6, CH4, CO2, and VOCs. The travel times determined for SF6 from the tracer test are approximately two to ten times smaller than estimated travel times that incorporate transport by only gas-phase diffusion. In addition, significant concentrations of CH4 and CO2 were measured, indicating production of landfill gas. Based on these results, it is hypothesized that the enhanced rates of transport observed for SF6 are caused by advective transport associated with landfill gas generation. The rates of transport varied vertically, which is attributed to multiple factors including spatial variability of water content, refuse mass, refuse permeability, and gas generation.

  3. Capillary deposition of advected floating particles

    NASA Astrophysics Data System (ADS)

    Dressaire, Emilie; Debaisieux, Aymeric; Gregori, Federico

    2016-11-01

    The deposition and aggregation of particles flowing through a confined environment can dramatically hinder the transport of suspensions. Yet, the mechanisms responsible for the deposition of particles in shear flow are not fully understood. Here, we use an experimental model system in which floating particles are advected on the surface of a water channel and deposited on fixed obstacles through attractive capillary effects. By varying the flow rate of the liquid, the wetting properties and size of the particles and obstacles, we can tune the magnitude of the capillary and hydrodynamic forces that determine the probability of deposition and the equilibrium position on the substrate. We show that arrays of obstacles can be designed to efficiently capture the floating particles advected by the flow.

  4. Langevin model for reactive transport in porous media

    NASA Astrophysics Data System (ADS)

    Tartakovsky, Alexandre M.

    2010-08-01

    Existing continuum models for reactive transport in porous media tend to overestimate the extent of solute mixing and mixing-controlled reactions because the continuum models treat both the mechanical and diffusive mixings as an effective Fickian process. Recently, we have proposed a phenomenological Langevin model for flow and transport in porous media [A. M. Tartakovsky, D. M. Tartakovsky, and P. Meakin, Phys. Rev. Lett. 101, 044502 (2008)10.1103/PhysRevLett.101.044502]. In the Langevin model, the fluid flow in a porous continuum is governed by a combination of a Langevin equation and a continuity equation. Pore-scale velocity fluctuations, the source of mechanical dispersion, are represented by the white noise. The advective velocity (the solution of the Langevin flow equation) causes the mechanical dispersion of a solute. Molecular diffusion and sub-pore-scale Taylor-type dispersion are modeled by an effective stochastic advection-diffusion equation. Here, we propose a method for parameterization of the model for a synthetic porous medium, and we use the model to simulate multicomponent reactive transport in the porous medium. The detailed comparison of the results of the Langevin model with pore-scale and continuum (Darcy) simulations shows that: (1) for a wide range of Peclet numbers the Langevin model predicts the mass of reaction product more accurately than the Darcy model; (2) for small Peclet numbers predictions of both the Langevin and the Darcy models agree well with a prediction of the pore-scale model; and (3) the accuracy of the Langevin and Darcy model deteriorates with the increasing Peclet number but the accuracy of the Langevin model decreases more slowly than the accuracy of the Darcy model. These results show that the separate treatment of advective and diffusive mixing in the stochastic transport model is more accurate than the classical advection-dispersion theory, which uses a single effective diffusion coefficient (the dispersion

  5. A partially open porous media flow with chaotic advection: towards a model of coupled fields.

    PubMed

    Metcalfe, Guy; Lester, Daniel; Ord, Alison; Kulkarni, Pandurang; Trefry, Mike; Hobbs, Bruce E; Regenaur-Lieb, Klaus; Morris, Jeffery

    2010-01-13

    In nature, dissipative fluxes of fluid, heat and/or reacting species couple to each other and may also couple to deformation of a surrounding porous matrix. We use the well-known analogy of Hele-Shaw flow to Darcy flow to make a model porous medium with porosity proportional to local cell height. Time- and space-varying fluid injection from multiple source/sink wells lets us create many different kinds of chaotic flows and chemical concentration patterns. Results of an initial time-dependent potential flow model illustrate that this is a partially open flow, in which parts of the material transported by the flow remain in the cell forever and parts pass through with residence time and exit time distributions that have self-similar features in the control parameter space of the stirring. We derive analytically the existence boundary in stirring control parameter space between where isolated fluid regions can and cannot remain forever in the open flow. Experiments confirm the predictions.

  6. Coupling between geochemical reactions and multicomponent gas and solute transport in unsaturated media: A reactive transport modeling study

    NASA Astrophysics Data System (ADS)

    Molins, S.; Mayer, K. U.

    2007-05-01

    The two-way coupling that exists between biogeochemical reactions and vadose zone transport processes, in particular gas phase transport, determines the composition of soil gas. To explore these feedback processes quantitatively, multicomponent gas diffusion and advection are implemented into an existing reactive transport model that includes a full suite of geochemical reactions. Multicomponent gas diffusion is described on the basis of the dusty gas model, which accounts for all relevant gas diffusion mechanisms. The simulation of gas attenuation in partially saturated landfill soil covers, methane production, and oxidation in aquifers contaminated by organic compounds (e.g., an oil spill site) and pyrite oxidation in mine tailings demonstrate that both diffusive and advective gas transport can be affected by geochemical reactions. Methane oxidation in landfill covers reduces the existing upward pressure gradient, thereby decreasing the contribution of advective methane emissions to the atmosphere and enhancing the net flux of atmospheric oxygen into the soil column. At an oil spill site, methane oxidation causes a reversal in the direction of gas advection, which results in advective transport toward the zone of oxidation both from the ground surface and the deeper zone of methane production. Both diffusion and advection contribute to supply atmospheric oxygen into the subsurface, and methane emissions to the atmosphere are averted. During pyrite oxidation in mine tailings, pressure reduction in the reaction zone drives advective gas flow into the sediment column, enhancing the oxidation process. In carbonate-rich mine tailings, calcite dissolution releases carbon dioxide, which partly offsets the pressure reduction caused by O2 consumption.

  7. Coupling between geochemical reactions and multicomponent gas and solute transport in unsaturated media: A reactive transport modeling study

    USGS Publications Warehouse

    Molins, S.; Mayer, K.U.

    2007-01-01

    The two-way coupling that exists between biogeochemical reactions and vadose zone transport processes, in particular gas phase transport, determines the composition of soil gas. To explore these feedback processes quantitatively, multicomponent gas diffusion and advection are implemented into an existing reactive transport model that includes a full suite of geochemical reactions. Multicomponent gas diffusion is described on the basis of the dusty gas model, which accounts for all relevant gas diffusion mechanisms. The simulation of gas attenuation in partially saturated landfill soil covers, methane production, and oxidation in aquifers contaminated by organic compounds (e.g., an oil spill site) and pyrite oxidation in mine tailings demonstrate that both diffusive and advective gas transport can be affected by geochemical reactions. Methane oxidation in landfill covers reduces the existing upward pressure gradient, thereby decreasing the contribution of advective methane emissions to the atmosphere and enhancing the net flux of atmospheric oxygen into the soil column. At an oil spill site, methane oxidation causes a reversal in the direction of gas advection, which results in advective transport toward the zone of oxidation both from the ground surface and the deeper zone of methane production. Both diffusion and advection contribute to supply atmospheric oxygen into the subsurface, and methane emissions to the atmosphere are averted. During pyrite oxidation in mine tailings, pressure reduction in the reaction zone drives advective gas flow into the sediment column, enhancing the oxidation process. In carbonate-rich mine tailings, calcite dissolution releases carbon dioxide, which partly offsets the pressure reduction caused by O2 consumption.

  8. UZ Colloid Transport Model

    SciTech Connect

    M. McGraw

    2000-04-13

    The UZ Colloid Transport model development plan states that the objective of this Analysis/Model Report (AMR) is to document the development of a model for simulating unsaturated colloid transport. This objective includes the following: (1) use of a process level model to evaluate the potential mechanisms for colloid transport at Yucca Mountain; (2) Provide ranges of parameters for significant colloid transport processes to Performance Assessment (PA) for the unsaturated zone (UZ); (3) Provide a basis for development of an abstracted model for use in PA calculations.

  9. Using OTIS to model solute transport in streams and rivers

    USGS Publications Warehouse

    Runkel, Robert L.

    2000-01-01

    Solute transport in streams and rivers is governed by a suite of hydrologic and geochemical processes. Knowledge of these processes is needed when assessing the fate of contaminants that are released into surface waters. The study of solute fate and transport often is aided by solute transport models that mathematically describe the underlying processes. This fact sheet describes a model that considers One-Dimensional Transport with Inflow and Storage (OTIS). As shown by several example applications, OTIS may be used in conjunction with field-scale data to quantify hydrologic processes (advection, dispersion, and transient storage) and certain chemical reactions (sorption and first-order decay).

  10. Steady-State and Transient Groundwater Flow and Advective Transport, Eastern Snake River Plain Aquifer, Idaho National Laboratory and Vicinity, Idaho

    NASA Astrophysics Data System (ADS)

    Fisher, J. C.; Ackerman, D. J.; Rousseau, J. P.; Rattray, G. W.

    2009-12-01

    Three-dimensional steady-state and transient models of groundwater flow and advective transport through the fractured basalts and interbedded sediments of the Eastern Snake River Plain (ESRP) aquifer were developed by the U.S. Geological Survey in cooperation with the U.S. Department of Energy. The model domain covers an area of 1,940 square miles that includes most of the Idaho National Laboratory (INL). A 50-year history of waste disposal at the INL has resulted in measurable concentrations of waste contaminants in the aquifer. Numerical models simulated 1980 steady-state conditions and transient flow for 1980-95. In the transient model, streamflow infiltration was the major stress. The models were calibrated using the parameter-estimation program incorporated in MODFLOW-2000. The steady-state model reasonably simulated the observed water-table altitude and gradients. Simulation of transient conditions reproduced changes in the flow system resulting from episodic infiltration from the Big Lost River. Analysis of simulations shows that flow is (1) dominantly horizontal through interflow zones in basalt, vertical anisotropy resulting from contrasts in hydraulic conductivity of different types of basalt and the interbedded sediments, (2) temporally variable due to streamflow infiltration from the Big Lost River, and (3) moving downward downgradient of the INL. Particle-tracking simulations were used to evaluate how simulated groundwater flow paths and travel times differ between the steady-state and transient flow models, and how well model-derived groundwater flow directions and velocities compare to independently-derived estimates. Particle tracking also was used to simulate the growth of tritium plumes originating at two INL facilities over a 16 year period under steady-state and transient flow conditions (1953-68). The shape, dimensions, and areal extent of these plumes were compared to a map of the plumes for 1968 from tritium releases beginning in 1952

  11. DESCRIPTION OF ATMOSPHERIC TRANSPORT PROCESSES IN EULERIAN AIR QUALITY MODELS

    EPA Science Inventory

    Key differences among many types of air quality models are the way atmospheric advection and turbulent diffusion processes are treated. Gaussian models use analytical solutions of the advection-diffusion equations. Lagrangian models use a hypothetical air parcel concept effecti...

  12. STATISTICAL METHODOLOGY FOR ESTIMATING TRANSPORT PARAMETERS: THEORY AND APPLICATIONS TO ONE-DOMENSIONAL ADVECTIVE-DISPERSIVE SYSTEMS.

    USGS Publications Warehouse

    Wagner, Brian J.; Gorelick, Steven M.

    1986-01-01

    A simulation nonlinear multiple-regression methodology for estimating parameters that characterize the transport of contaminants is developed and demonstrated. Finite difference containment transport simulation is combined with a nonlinear weighted least squares multiple-regression procedure. The technique provides optimal parameter estimates and gives statistics for assessing the reliability of these estimates under certain general assumptions about the distributions of the random measurement errors. Monte Carlo analysis is used to estimate parameter reliability for a hypothetical homogeneous soil column for which concentration data contain large random measurement errors. The value of data collected spatially versus data collected temporally was investigated for estimation of velocity, dispersion coefficient, effective porosity, first-order decay rate, and zero-order production. The use of spatial data gave estimates that were 2-3 times more reliable than estimates based on temporal data for all parameters except velocity. (Estimated author abstract) Refs.

  13. Aspects of numerical and representational methods related to the finite-difference simulation of advective and dispersive transport of freshwater in a thin brackish aquifer

    USGS Publications Warehouse

    Merritt, M.L.

    1993-01-01

    The simulation of the transport of injected freshwater in a thin brackish aquifer, overlain and underlain by confining layers containing more saline water, is shown to be influenced by the choice of the finite-difference approximation method, the algorithm for representing vertical advective and dispersive fluxes, and the values assigned to parametric coefficients that specify the degree of vertical dispersion and molecular diffusion that occurs. Computed potable water recovery efficiencies will differ depending upon the choice of algorithm and approximation method, as will dispersion coefficients estimated based on the calibration of simulations to match measured data. A comparison of centered and backward finite-difference approximation methods shows that substantially different transition zones between injected and native waters are depicted by the different methods, and computed recovery efficiencies vary greatly. Standard and experimental algorithms and a variety of values for molecular diffusivity, transverse dispersivity, and vertical scaling factor were compared in simulations of freshwater storage in a thin brackish aquifer. Computed recovery efficiencies vary considerably, and appreciable differences are observed in the distribution of injected freshwater in the various cases tested. The results demonstrate both a qualitatively different description of transport using the experimental algorithms and the interrelated influences of molecular diffusion and transverse dispersion on simulated recovery efficiency. When simulating natural aquifer flow in cross-section, flushing of the aquifer occurred for all tested coefficient choices using both standard and experimental algorithms. ?? 1993.

  14. Conceptual model for transport processes in the Culebra Dolomite Member, Rustler Formation

    SciTech Connect

    Holt, R.M.

    1997-08-01

    The Culebra Dolomite Member of the Rustler Formation represents a possible pathway for contaminants from the Waste Isolation Pilot Plant underground repository to the accessible environment. The geologic character of the Culebra is consistent with a double-porosity, multiple-rate model for transport in which the medium is conceptualized as consisting of advective porosity, where solutes are carried by the groundwater flow, and fracture-bounded zones of diffusive porosity, where solutes move through slow advection or diffusion. As the advective travel length or travel time increases, the nature of transport within a double-porosity medium changes. This behavior is important for chemical sorption, because the specific surface area per unit mass of the diffusive porosity is much greater than in the advective porosity. Culebra transport experiments conducted at two different length scales show behavior consistent with a multiple-rate, double-porosity conceptual model for Culebra transport. Tracer tests conducted on intact core samples from the Culebra show no evidence of significant diffusion, suggesting that at the core scale the Culebra can be modeled as a single-porosity medium where only the advective porosity participates in transport. Field tracer tests conducted in the Culebra show strong double-porosity behavior that is best explained using a multiple-rate model.

  15. Characterization of GX 339-4 outburst of 2010-11: analysis by XSPEC using two component advective flow model

    NASA Astrophysics Data System (ADS)

    Debnath, Dipak; Mondal, Santanu; Chakrabarti, Sandip K.

    2015-02-01

    We study spectral properties of GX 339-4 during its 2010-11 outburst with two component advective flow (TCAF) model after its inclusion in XSPEC as a table model. We compare results fitted by TCAF model with combined disc blackbody and power-law model. For a spectral fit, we use 2.5-25 keV spectral data of the Proportional Counter Array instrument onboard RXTE satellite. From our fit, accretion flow parameters such as Keplerian (disc) rate, sub-Keplerian (halo) rate, location and strength of shock are extracted. We quantify how the disc and the halo rates vary during the entire outburst. We study how the halo to disc accretion rate ratio (ARR), quasi-periodic oscillations (QPOs), shock locations and its strength vary when the system passes through hard, hard-intermediate, soft-intermediate and soft states. We find pieces of evidence of monotonically increasing and decreasing nature of QPO frequencies depending on the variation of ARR during rising and declining phases. Interestingly, on days of transition from hard state to hard-intermediate spectral state (during the rising phase) or vice-versa (during decline phase), ARR is observed to be locally maximum. Non-constancy of ARR while obtaining reasonable fits points to the presence of two independent components in the flow.

  16. Nowcasting Thermodynamic Profiles Using a Triangle of Wind Profilers in an Advection Model.

    DTIC Science & Technology

    1986-01-01

    actual soundings which were launched from fourteen sites in Kansas and Oklahoma during PRE-STORM (Fig. 1.1) (Topeka, KS did not participate). The...difference between the estimate and the actual observation is calculated for each station, then a new value is computed for each gridpoint using the following...Fig. 3.9). Although in time, the modeled wind field adjusts to generally agree with the actual frontal position, the modeled post-frontal air mass is

  17. A BABCOCK–LEIGHTON SOLAR DYNAMO MODEL WITH MULTI-CELLULAR MERIDIONAL CIRCULATION IN ADVECTION- AND DIFFUSION-DOMINATED REGIMES

    SciTech Connect

    Belucz, Bernadett; Forgács-Dajka, Emese; Dikpati, Mausumi E-mail: dikpati@ucar.edu

    2015-06-20

    Babcock–Leighton type-solar dynamo models with single-celled meridional circulation are successful in reproducing many solar cycle features. Recent observations and theoretical models of meridional circulation do not indicate a single-celled flow pattern. We examine the role of complex multi-cellular circulation patterns in a Babcock–Leighton solar dynamo in advection- and diffusion-dominated regimes. We show from simulations that the presence of a weak, second, high-latitude reverse cell speeds up the cycle and slightly enhances the poleward branch in the butterfly diagram, whereas the presence of a second cell in depth reverses the tilt of the butterfly wing to an antisolar type. A butterfly diagram constructed from the middle of convection zone yields a solar-like pattern, but this may be difficult to realize in the Sun because of magnetic buoyancy effects. Each of the above cases behaves similarly in higher and lower magnetic diffusivity regimes. However, our dynamo with a meridional circulation containing four cells in latitude behaves distinctly differently in the two regimes, producing solar-like butterfly diagrams with fast cycles in the higher diffusivity regime, and complex branches in butterfly diagrams in the lower diffusivity regime. We also find that dynamo solutions for a four-celled pattern, two in radius and two in latitude, prefer to quickly relax to quadrupolar parity if the bottom flow speed is strong enough, of similar order of magnitude as the surface flow speed.

  18. Railway switch transport model.

    PubMed

    Horvat, Martin; Prosen, Tomaž; Benenti, Giuliano; Casati, Giulio

    2012-11-01

    We propose a simple model of coupled heat and particle transport based on zero-dimensional classical deterministic dynamics, which is reminiscent of a railway switch whose action is a function only of the particle's energy. It is shown that already in the minimal three-terminal model, where the second terminal is considered as a probe with zero net particle and heat currents, one can find extremely asymmetric Onsager matrices as a consequence of time-reversal symmetry breaking of the model. This minimalistic transport model provides a better understanding of thermoelectric heat engines in the presence of time-reversal symmetry breaking.

  19. A computational method for sharp interface advection

    PubMed Central

    Bredmose, Henrik; Jasak, Hrvoje

    2016-01-01

    We devise a numerical method for passive advection of a surface, such as the interface between two incompressible fluids, across a computational mesh. The method is called isoAdvector, and is developed for general meshes consisting of arbitrary polyhedral cells. The algorithm is based on the volume of fluid (VOF) idea of calculating the volume of one of the fluids transported across the mesh faces during a time step. The novelty of the isoAdvector concept consists of two parts. First, we exploit an isosurface concept for modelling the interface inside cells in a geometric surface reconstruction step. Second, from the reconstructed surface, we model the motion of the face–interface intersection line for a general polygonal face to obtain the time evolution within a time step of the submerged face area. Integrating this submerged area over the time step leads to an accurate estimate for the total volume of fluid transported across the face. The method was tested on simple two-dimensional and three-dimensional interface advection problems on both structured and unstructured meshes. The results are very satisfactory in terms of volume conservation, boundedness, surface sharpness and efficiency. The isoAdvector method was implemented as an OpenFOAM® extension and is published as open source. PMID:28018619

  20. Derivation of a Multiparameter Gamma Model for Analyzing the Residence-Time Distribution Function for Nonideal Flow Systems as an Alternative to the Advection-Dispersion Equation

    DOE PAGES

    Embry, Irucka; Roland, Victor; Agbaje, Oluropo; ...

    2013-01-01

    A new residence-time distribution (RTD) function has been developed and applied to quantitative dye studies as an alternative to the traditional advection-dispersion equation (AdDE). The new method is based on a jointly combined four-parameter gamma probability density function (PDF). The gamma residence-time distribution (RTD) function and its first and second moments are derived from the individual two-parameter gamma distributions of randomly distributed variables, tracer travel distance, and linear velocity, which are based on their relationship with time. The gamma RTD function was used on a steady-state, nonideal system modeled as a plug-flow reactor (PFR) in the laboratory to validate themore » effectiveness of the model. The normalized forms of the gamma RTD and the advection-dispersion equation RTD were compared with the normalized tracer RTD. The normalized gamma RTD had a lower mean-absolute deviation (MAD) (0.16) than the normalized form of the advection-dispersion equation (0.26) when compared to the normalized tracer RTD. The gamma RTD function is tied back to the actual physical site due to its randomly distributed variables. The results validate using the gamma RTD as a suitable alternative to the advection-dispersion equation for quantitative tracer studies of non-ideal flow systems.« less

  1. Lagrangian Sediment Transport Model

    NASA Astrophysics Data System (ADS)

    Maderych, V.; Brovchenko, I.; Fenical, S.; Shepsis, V.

    2004-12-01

    A new two-dimensional Lagrangian sediment transport model was developed to simulate a wide-range of sediment transport processes, including sediment mobility under combined current and wave action, sediment transport and bed change under wave and currents effects, sediment transport patterns at nearshore coastal and offshore structures, and turbidity and sediment motion during dredging and dredged material placement. The Lagrangian technique was used to simulate transport of sediments, deposition, and re-suspension. The model can be applied to cohesive, non-cohesive, or mixed sediments. The sediment transport is simulated using bathymetry data, bed resistance characteristics, wave height and period, depth-averaged current velocity and bed material type, size and gradation, which vary throughout the model domain.The non-cohesive sediment transport model is based on a solution of two-dimensional mass conservation equations for the bed layer material and 2D equations for movement of sediment fractions either bed load or suspended load. The water column and bottom are divided into a set of layers: water layer, active layer, several active bed layers, and the bed layer. The model also takes into account the effects of armoring and changes in the bed composition. Cohesive sediments move entirely as suspended load in the water layer and sediment transport computations are based on a solution of the two-dimensional mass conservation equations for the bed layer material and two-dimensional equations for movement of sediment as suspended load. The water column and bed, as for non-cohesive sediments, was divided into a set of layers. Following the approach of Van Ledden (2002), the erosion of sediments made up of mud and sand mixtures is non-cohesive if the mud content is below a critical level. Above a critical mud content, the bed behaves cohesively. Deposition fluxes of mud and sand are independent. The sediment concentration in the water and active layer is represented by

  2. APPLICATION OF A FULLY DISTRIBUTED WASHOFF AND TRANSPORT MODEL FOR A GULF COAST WATERSHED

    EPA Science Inventory

    Advances in hydrologic modeling have been shown to improve the accuracy of rainfall runoff simulation and prediction. Building on the capabilities of distributed hydrologic modeling, a water quality model was developed to simulate buildup, washoff, and advective transport of a co...

  3. Scales of mantle heterogeneity emerging from 3-D models of advective stretching

    NASA Astrophysics Data System (ADS)

    Kellogg, L. H.; Conjeepuram, N.

    2009-12-01

    Heterogeneities are continually introduced into the mantle by subduction, and then are homogenized by stretching, folding, and finally diffusion. The stretching and folding components control the timescale of mixing in the mantle. Mixing has been studied in 2-D and to a lesser extent in 3-D models, often by using statistical analysis of separation of passive tracers. It has been proposed that mixing in 3-D time dependent convection may differ substantially from mixing in 2-D due to the different structure of the flow. To investigate the processes that determine the scales of heterogeneity in the mantle, we use a complementary method, computing the stretching experienced by passive, infinitesimal, ellipsoidal strain markers in 3-D models of mantle convection. This approach has an advantage over more commonly used methods of calculating separation of particles, because we obtain information about deformation (a mechanism to develop different scales of heterogeneity in the mantle) and about orientation of strain ellipsoids (which can result in fabrics that may lead to anisotropy). We investigate both kinematic and dynamic flows. In plate-driven kinematic flows, the toroidal component of the velocity field emerges as an important factor in mixing. Increasing the toroidal energy in the flow increases the complexity of the stretching patterns that develop and persist through time and homogenizes the stretching distribution. By computing the frequency size distribution of the strain ellipsoids we find that a marble cake upper mantle is a natural consequence of plate-driven flow. We also apply this method to evaluate the role of viscosity contrast in development of heterogeneity convection at different Rayleigh numbers. These models yield complex patterns in which tracers can separate or remain isolated, again leading to a marble-cake upper mantle. We use an innovative method of visualizing the distribution of stretching in 3-D to illustrate these results.

  4. Interface capturing using a compressive advection method and a compositional modelling approach: Applications

    NASA Astrophysics Data System (ADS)

    Pavlidis, Dimitrios; Xie, Zhihua; Percival, James; Gomes, Jefferson; Pain, Christopher; Matar, Omar

    2013-11-01

    Progress on a consistent approach for interface-capturing in which each component represents a different phase/fluid is described. The aim is to develop a general multiphase modelling approach based on fully-unstructured meshes that can exploit the latest mesh adaptivity methods, and in which each fluid phase may have a number of components. The method is based on the P1DG-P2 finite element pair, in which the velocity has a linear discontinuous variation and the pressure has a quadratic continuous variation. The method is compared against experimental results for a collapsing water column test case and a convergence study is performed. The method is then used to simulate horizontal slug flow. EPSRC Programme Grant EP/K003976/1.

  5. Interface-tracking using a compressive advection method and a compositional modelling approach

    NASA Astrophysics Data System (ADS)

    Pavlidis, Dimitrios; Gomes, Jefferson; Pain, Christopher; Matar, Omar

    2012-11-01

    We describe progress on a consistent approach for interface- tracking in which each component, representing a different phase/fluid, has a sum of unity. Our aim is to develop a general multiphase modelling approach based on fully-unstructured meshes that can exploit the latest mesh adaptivity methods, and in which each fluid phase may have a number of components that are assumed to be immiscible in this work although not a requirement of the approach. The method is based on a new mixed finite element pair, the P1DG-P2 element, in which pressure has a quadratic variation and velocity a discontinuous linear variation with the discontinuity between elements. This element allows us to represent key balances such as hydrostatic balance exactly assuming a linear variation in buoyancy. This means that on unstructured meshes we do not have problems representing these key balances that can result in large pressure gradients which, in turn, generate large spurious velocities that can dominate the solution. We apply the method to a series of benchmark problems that demonstrate the approach and show that the method works for at least three different fluids, and that it avoids putting a priority on resolving any of these fields or components. EPSRC Programme Grant EP/K003976/1.

  6. BUOYANT ADVECTION OF GASES IN UNSATURATED SOIL

    PubMed Central

    Seely, Gregory E.; Falta, Ronald W.; Hunt, James R.

    2010-01-01

    In unsaturated soil, methane and volatile organic compounds can significantly alter the density of soil gas and induce buoyant gas flow. A series of laboratory experiments was conducted in a two-dimensional, homogeneous sand pack with gas permeabilities ranging from 110 to 3,000 darcy. Pure methane gas was injected horizontally into the sand and steady-state methane profiles were measured. Experimental results are in close agreement with a numerical model that represents the advective and diffusive components of methane transport. Comparison of simulations with and without gravitational acceleration permits identification of conditions where buoyancy dominates methane transport. Significant buoyant flow requires a Rayleigh number greater than 10 and an injected gas velocity sufficient to overcome dilution by molecular diffusion near the source. These criteria allow the extension of laboratory results to idealized field conditions for methane as well as denser-than-air vapors produced by volatilizing nonaqueous phase liquids trapped in unsaturated soil. PMID:20396624

  7. Comparison of transport and attachment behaviors of Cryptosporidium parvum oocysts and oocyst-sized microspheres being advected through three minerologically different granular porous media

    USGS Publications Warehouse

    Mohanram, A.; Ray, C.; Harvey, R.W.; Metge, D.W.; Ryan, J.N.; Chorover, J.; Eberl, D.D.

    2010-01-01

    In order to gain more information about the fate of Cryptosporidium parvum oocysts in tropical volcanic soils, the transport and attachment behaviors of oocysts and oocyst-sized polystyrene microspheres were studied in the presence of two soils. These soils were chosen because of their differing chemical and physical properties, i.e., an organic-rich (43-46% by mass) volcanic ash-derived soil from the island of Hawaii, and a red, iron (22-29% by mass), aluminum (29-45% by mass), and clay-rich (68-76% by mass) volcanic soil from the island of Oahu. A third agricultural soil, an organic- (13% by mass) and quartz-rich (40% by mass) soil from Illinois, was included for reference. In 10-cm long flow-through columns, oocysts and microspheres advecting through the red volcanic soil were almost completely (98% and 99%) immobilized. The modest breakthrough resulted from preferential flow-path structure inadvertently created by soil-particle aggregation during the re-wetting process. Although a high (99%) removal of oocysts and microsphere within the volcanic ash soil occurred initially, further examination revealed that transport was merely retarded because of highly reversible interactions with grain surfaces. Judging from the slope of the substantive and protracted tail of the breakthrough curve for the 1.8-??m microspheres, almost all (>99%) predictably would be recovered within ~4000 pore volumes. This suggests that once contaminated, the volcanic ash soil could serve as a reservoir for subsequent contamination of groundwater, at least for pathogens of similar size or smaller. Because of the highly reversible nature of organic colloid immobilization in this soil type, C. parvum could contaminate surface water should overland flow during heavy precipitation events pick up near-surface grains to which they are attached. Surprisingly, oocyst and microsphere attachment to the reference soil from Illinois appeared to be at least as sensitive to changes in pH as was observed

  8. Modeling multispecies reactive transport in ground water

    SciTech Connect

    Clement, T.P.; Sun, Y.; Hooker, B.S.; Petersen, J.N.

    1998-12-31

    In this paper, the details of RT3D, a general purpose, multispecies, reactive transport code, are presented. The code uses MODFLOW to simulate flow and several MT3D sub-programs to simulate advection and dispersion. A set of reaction modules were developed and incorporated into RT3D to simulate various types of multispecies reactive transport. This new computer model can be used for analyzing different types of subsurface contaminant reactions, microbial metabolisms, and microbial transport kinetics. Details of the model and numerical solution procedure are presented. The numerical formulation of the code is general enough to allow description of any type of reaction with any number of mobile/immobile species. Several example problems are presented to test the performance of the code, and to illustrate its features. The presented numerical model is shown to be a useful tool for analyzing different types of subsurface bioremediation systems. Prediction based on this model can be used for screening remediation alternatives including natural attenuation and/or for forecasting contaminant exposure levels and environmental risks at sensitive, downgradient receptors.

  9. Reactive transport modeling

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This special section in the Vadose Zone Journal focusing on reactive transport modeling was developed from a special symposium jointly sponsored by the Soil Physics and Soil Chemistry Divisions of the Soil Science Society of America at the 2010 annual meetings held in Long Beach, CA. It contains eig...

  10. Sensitivity study of advection and diffusion coefficients in a two-dimensional stratospheric model using excess carbon 14 data

    NASA Technical Reports Server (NTRS)

    Shia, Run-Lie; Yung, Yuk L.; Allen, Mark; Zurek, Richard W.; Crisp, David

    1989-01-01

    The time evolution of excess C-14 in the stratosphere and the troposphere from October 1963 to December 1966 is investigated using the Caltech/JPL two-dimensioanal transport model, with transport coefficients taken from Yang and Tung (1989). It is found that the model successfully accounts for observations reported previously. It is calculated that excess C-14 is removed from the atmosphere with surface deposition velocities of 0.003 cm/sec in the Southern Hemisphere and 0.005 cm/sec in the Northern Hemisphere. This result is contrary to the current understanding that the oceans are the dominant sink for excess C-14.

  11. The effect of vertical advection and diffusion on nutrient supply to the euphotic zone: a model study of the Iceland-Faeroes Front

    NASA Astrophysics Data System (ADS)

    Popova, E.; Srokosz, M.

    2006-12-01

    This paper examines the effect of vertical advection and vertical diffusion on the supply of nutrients to the euphotic zone. This is done using a high resolution coupled biological-physical model, that has previously been used to reproduce in situ and satellite observations of physical and biological variability at the Iceland Faeroes Front (IFF). Oligotrophic conditions are imposed in the model in order to examine the vertical flux of nutrients.The results show that, while instantaneous vertical advective fluxes of nutrients can be much larger than vertical diffusive ones, over a period of days the latter act consistently to supply nutrients to the euphotic zone. In contrast, the spatially and temporally varying nature of the vertical velocity field means that there is no consistent vertical advective flux of nutrients. This suggests that for real "messy" complex flows, such as the one modelled here, ageostrophic vertical velocities induced by eddies and frontal meanders may not play as important a role in supplying nutrient to the euphotic zone, and in enhancing biological production there, as has previously been thought.

  12. The contiguous domains of Arctic Ocean advection: Trails of life and death

    NASA Astrophysics Data System (ADS)

    Wassmann, P.; Kosobokova, K. N.; Slagstad, D.; Drinkwater, K. F.; Hopcroft, R. R.; Moore, S. E.; Ellingsen, I.; Nelson, R. J.; Carmack, E.; Popova, E.; Berge, J.

    2015-12-01

    The central Arctic Ocean is not isolated, but tightly connected to the northern Pacific and Atlantic Oceans. Advection of nutrient-, detritus- and plankton-rich waters into the Arctic Ocean forms lengthy contiguous domains that connect subarctic with the arctic biota, supporting both primary production and higher trophic level consumers. In turn, the Arctic influences the physical, chemical and biological oceanography of adjacent subarctic waters through southward fluxes. However, exports of biomass out of the Arctic Ocean into both the Pacific and Atlantic Oceans are thought to be far smaller than the northward influx. Thus, Arctic Ocean ecosystems are net biomass beneficiaries through advection. The biotic impact of Atlantic- and Pacific-origin taxa in arctic waters depends on the total supply of allochthonously-produced biomass, their ability to survive as adults and their (unsuccessful) reproduction in the new environment. Thus, advective transport can be thought of as trails of life and death in the Arctic Ocean. Through direct and indirect (mammal stomachs, models) observations this overview presents information about the advection and fate of zooplankton in the Arctic Ocean, now and in the future. The main zooplankton organisms subjected to advection into and inside the Arctic Ocean are (a) oceanic expatriates of boreal Atlantic and Pacific origin, (b) oceanic Arctic residents and (c) neritic Arctic expatriates. As compared to the Pacific gateway the advective supply of zooplankton biomass through the Atlantic gateways is 2-3 times higher. Advection characterises how the main planktonic organisms interact along the contiguous domains and shows how the subarctic production regimes fuel life in the Arctic Ocean. The main differences in the advective regimes through the Pacific and Atlantic gateways are presented. The Arctic Ocean is, at least in some regions, a net heterotrophic ocean that - during the foreseeable global warming trend - will more and more rely

  13. An upscaled approach for transport in media with extended tailing due to back-diffusion using analytical and numerical solutions of the advection dispersion equation.

    PubMed

    Parker, Jack C; Kim, Ungtae

    2015-11-01

    The mono-continuum advection-dispersion equation (mADE) is commonly regarded as unsuitable for application to media that exhibit rapid breakthrough and extended tailing associated with diffusion between high and low permeability regions. This paper demonstrates that the mADE can be successfully used to model such conditions if certain issues are addressed. First, since hydrodynamic dispersion, unlike molecular diffusion, cannot occur upstream of the contaminant source, models must be formulated to prevent "back-dispersion." Second, large variations in aquifer permeability will result in differences between volume-weighted average concentration (resident concentration) and flow-weighted average concentration (flux concentration). Water samples taken from wells may be regarded as flux concentrations, while soil samples may be analyzed to determine resident concentrations. While the mADE is usually derived in terms of resident concentration, it is known that a mADE of the same mathematical form may be written in terms of flux concentration. However, when solving the latter, the mathematical transformation of a flux boundary condition applied to the resident mADE becomes a concentration type boundary condition for the flux mADE. Initial conditions must also be consistent with the form of the mADE that is to be solved. Thus, careful attention must be given to the type of concentration data that is available, whether resident or flux concentrations are to be simulated, and to boundary and initial conditions. We present 3-D analytical solutions for resident and flux concentrations, discuss methods of solving numerical models to obtain resident and flux concentrations, and compare results for hypothetical problems. We also present an upscaling method for computing "effective" dispersivities and other mADE model parameters in terms of physically meaningful parameters in a diffusion-limited mobile-immobile model. Application of the latter to previously published studies of

  14. Advection, diffusion, and delivery over a network.

    PubMed

    Heaton, Luke L M; López, Eduardo; Maini, Philip K; Fricker, Mark D; Jones, Nick S

    2012-08-01

    Many biological, geophysical, and technological systems involve the transport of a resource over a network. In this paper, we present an efficient method for calculating the exact quantity of the resource in each part of an arbitrary network, where the resource is lost or delivered out of the network at a given rate, while being subject to advection and diffusion. The key conceptual step is to partition the resource into material that does or does not reach a node over a given time step. As an example application, we consider resource allocation within fungal networks, and analyze the spatial distribution of the resource that emerges as such networks grow over time. Fungal growth involves the expansion of fluid filled vessels, and such growth necessarily involves the movement of fluid. We develop a model of delivery in growing fungal networks, and find good empirical agreement between our model and experimental data gathered using radio-labeled tracers. Our results lead us to suggest that in foraging fungi, growth-induced mass flow is sufficient to account for long-distance transport, if the system is well insulated. We conclude that active transport mechanisms may only be required at the very end of the transport pathway, near the growing tips.

  15. A KINETIC MODEL FOR CELL DENSITY DEPENDENT BACTERIAL TRANSPORT IN POROUS MEDIA

    EPA Science Inventory

    A kinetic transport model with the ability to account for variations in cell density of the aqueous and solid phases was developed for bacteria in porous media. Sorption kinetics in the advective-dispersive-sorptive equation was described by assuming that adsorption was proportio...

  16. Sensitivity of solute advective travel time to porosities of hydrogeologic units.

    PubMed

    Zhu, Jianting; Pohlmann, Karl F; Chapman, Jenny B; Russell, Charles E; Carroll, Rosemary W H; Shafer, David S

    2010-01-01

    An integral approach is proposed to quantify uncertainty and sensitivity of advective travel time to the effective porosities of hydrogeologic units (HGUs) along groundwater flow paths. The approach is applicable in situations where a groundwater flow model exists, but a full solute transport model is not available. The approach can be used to: (1) determine HGUs whose porosities are influential to the solute advective travel time; and (2) apportion uncertainties of solute advective travel times to the uncertainty contributions from individual HGU porosities. A simple one-dimensional steady-state flow example is used to illustrate the approach. Advective travel times of solutes are obtained based on the one-dimensional steady-state flow results in conjunction with the HGU porosities. The approach can be easily applicable to more complex multi-dimensional cases where advective solute travel time can be calculated based on simulated flow results from groundwater flow models. This approach is particularly valuable for optimizing limited resources when designing field characterization programs for uncertainty reduction by identifying HGUs that contribute most to the estimation uncertainty of advective travel times of solutes.

  17. One-Dimensional Transport with Equilibrium Chemistry (OTEQ) - A Reactive Transport Model for Streams and Rivers

    USGS Publications Warehouse

    Runkel, Robert L.

    2010-01-01

    OTEQ is a mathematical simulation model used to characterize the fate and transport of waterborne solutes in streams and rivers. The model is formed by coupling a solute transport model with a chemical equilibrium submodel. The solute transport model is based on OTIS, a model that considers the physical processes of advection, dispersion, lateral inflow, and transient storage. The equilibrium submodel is based on MINTEQ, a model that considers the speciation and complexation of aqueous species, acid-base reactions, precipitation/dissolution, and sorption. Within OTEQ, reactions in the water column may result in the formation of solid phases (precipitates and sorbed species) that are subject to downstream transport and settling processes. Solid phases on the streambed may also interact with the water column through dissolution and sorption/desorption reactions. Consideration of both mobile (waterborne) and immobile (streambed) solid phases requires a unique set of governing differential equations and solution techniques that are developed herein. The partial differential equations describing physical transport and the algebraic equations describing chemical equilibria are coupled using the sequential iteration approach. The model's ability to simulate pH, precipitation/dissolution, and pH-dependent sorption provides a means of evaluating the complex interactions between instream chemistry and hydrologic transport at the field scale. This report details the development and application of OTEQ. Sections of the report describe model theory, input/output specifications, model applications, and installation instructions. OTEQ may be obtained over the Internet at http://water.usgs.gov/software/OTEQ.

  18. Radionuclide Transport Models Under Ambient Conditions

    SciTech Connect

    G. Moridis; Q. Hu

    2000-03-12

    The purpose of this Analysis/Model Report (AMR) is to evaluate (by means of 2-D semianalytical and 3-D numerical models) the transport of radioactive solutes and colloids in the unsaturated zone (UZ) under ambient conditions from the potential repository horizon to the water table at Yucca Mountain (YM), Nevada. This is in accordance with the ''AMR Development Plan U0060, Radionuclide Transport Models Under Ambient Conditions'' (CRWMS M and O 1999a). This AMR supports the UZ Flow and Transport Process Model Report (PMR). This AMR documents the UZ Radionuclide Transport Model (RTM). This model considers: the transport of radionuclides through fractured tuffs; the effects of changes in the intensity and configuration of fracturing from hydrogeologic unit to unit; colloid transport; physical and retardation processes and the effects of perched water. In this AMR they document the capabilities of the UZ RTM, which can describe flow (saturated and/or unsaturated) and transport, and accounts for (a) advection, (b) molecular diffusion, (c) hydrodynamic dispersion (with full 3-D tensorial representation), (d) kinetic or equilibrium physical and/or chemical sorption (linear, Langmuir, Freundlich or combined), (e) first-order linear chemical reaction, (f) radioactive decay and tracking of daughters, (g) colloid filtration (equilibrium, kinetic or combined), and (h) colloid-assisted solute transport. Simulations of transport of radioactive solutes and colloids (incorporating the processes described above) from the repository horizon to the water table are performed to support model development and support studies for Performance Assessment (PA). The input files for these simulations include transport parameters obtained from other AMRs (i.e., CRWMS M and O 1999d, e, f, g, h; 2000a, b, c, d). When not available, the parameter values used are obtained from the literature. The results of the simulations are used to evaluate the transport of radioactive solutes and colloids, and

  19. GeoClawSed: A Model with Finite Volume and Adaptive Refinement Method for Tsunami Sediment Transport

    NASA Astrophysics Data System (ADS)

    Tang, H.; Weiss, R.

    2015-12-01

    The shallow-water and advection-diffusion equations are commonly used for tsunami sediment-transport modeling. GeoClawSed is based on GeoClaw and adds a bed updating and avalanching scheme to the two-dimensional coupled system combining the shallow- water and advection-diffusion equations, which is a set of hyperbolic integral conservation laws. The modeling system consists of three coupled model components: (1) the shallow-water equations for hydrodynamics; (2) advection-diffusion equation for sediment transport; and (3) an equation for morphodynamics. For the hydrodynamic part, the finite-volume wave propagation methods (high resolution Godunov-type methods) are applied to the shallow-water equations. The well-known Riemann solver in GeoClaw is capable of dealing with diverse flow regimes present during tsunami flows. For the sediment-transport part, the advection-diffusion equation is employed to calculate the distribution of sediment in the water column. In the fully-coupled version, the advection-diffusion equation is also included in the Riemann solver. The Van Leer method is applied for calculating sediment flux in each direction. The bed updating and avalanching scheme (morphodynamics) is used for updating topography during tsunami wave propagation. Adaptive refinement method is extended to hydrodynamic part, sediment transport model and topography. GeoClawSed can evolve different resolution and accurately capture discontinuities in both flow dynamic and sediment transport. Together, GeoClawSed is designed for modeling tsunami propagation, inundation, sediment transport as well as topography change. Finally, GeoClawSed is applied for studying marine and terrestrial deposit distribution after tsunami wave. Keywords: Tsunami; Sediment Transport; Shallow Water Equations; Advection-Diffusion Equation; Adaptive Refinement Method

  20. Final Technical Report - Stochastic Analysis of Advection-Diffusion-reaction Systems with Applications to Reactive Transport in Porous Media - DE-FG02-07ER24818

    SciTech Connect

    Karniadakis, George Em

    2014-03-11

    The main objective of this project is to develop new computational tools for uncertainty quantifica- tion (UQ) of systems governed by stochastic partial differential equations (SPDEs) with applications to advection-diffusion-reaction systems. We pursue two complementary approaches: (1) generalized polynomial chaos and its extensions and (2) a new theory on deriving PDF equations for systems subject to color noise. The focus of the current work is on high-dimensional systems involving tens or hundreds of uncertain parameters.

  1. MOZART, a global chemical transport model for ozone and related chemical tracers: 1. Model description

    NASA Astrophysics Data System (ADS)

    Brasseur, G. P.; Hauglustaine, D. A.; Walters, S.; Rasch, P. J.; Müller, J.-F.; Granier, C.; Tie, X. X.

    1998-11-01

    We present a new global three-dimensional chemical-transport model (called MOZART) developed in the framework of the NCAR Community Climate Model (CCM) and aimed at studying the distribution and budget of tropospheric ozone and its precursors. The model, developed with a horizontal resolution of 2.8° in longitude and latitude, includes 25 levels in the vertical between the Earth's surface and an upper boundary located at approximately 35 km altitude. In its present configuration the model calculates the global distribution of 56 chemical constituents with a timestep of 20 min, and accounts for surface emission and deposition, large-scale advective transport, subscale convective and boundary layer exchanges, chemical and photochemical transformations, as well as wet scavenging. Transport is simulated "off line" from CCM with dynamical variables provided every 3 hours from preestablished history tapes. Advection is calculated using the semi-Lagrangian transport scheme [Rasch and Williamson, 1990] developed for the MATCH model of Rasch et al. [1997]. Convective and boundary layer transports are expressed according to Hack [1994] and Holtslag and Boville [1993], respectively. A detailed evaluation of the model results is provided in a companion paper [Hauglustaine et al., this issue]. An analysis of the spatial and temporal variability in the chemical fields predicted by the model suggests that regional events such as summertime ozone episodes in polluted areas can be simulated by MOZART.

  2. On vertical advection truncation errors in terrain-following numerical models: Comparison to a laboratory model for upwelling over submarine canyons

    NASA Astrophysics Data System (ADS)

    Allen, S. E.; Dinniman, M. S.; Klinck, J. M.; Gorby, D. D.; Hewett, A. J.; Hickey, B. M.

    2003-01-01

    Submarine canyons which indent the continental shelf are frequently regions of steep (up to 45°), three-dimensional topography. Recent observations have delineated the flow over several submarine canyons during 2-4 day long upwelling episodes. Thus upwelling episodes over submarine canyons provide an excellent flow regime for evaluating numerical and physical models. Here we compare a physical and numerical model simulation of an upwelling event over a simplified submarine canyon. The numerical model being evaluated is a version of the S-Coordinate Rutgers University Model (SCRUM). Careful matching between the models is necessary for a stringent comparison. Results show a poor comparison for the homogeneous case due to nonhydrostatic effects in the laboratory model. Results for the stratified case are better but show a systematic difference between the numerical results and laboratory results. This difference is shown not to be due to nonhydrostatic effects. Rather, the difference is due to truncation errors in the calculation of the vertical advection of density in the numerical model. The calculation is inaccurate due to the terrain-following coordinates combined with a strong vertical gradient in density, vertical shear in the horizontal velocity and topography with strong curvature.

  3. Multi-scale analysis of collective behavior in 2D self-propelled particle models of swarms: An Advection-Diffusion with Memory Approach

    NASA Astrophysics Data System (ADS)

    Raghib, Michael; Levin, Simon; Kevrekidis, Ioannis

    2010-05-01

    2. The long-time behavior of the msd of the centroid walk scales linearly with time for naïve groups (diffusion), but shows a sharp transition to quadratic scaling (advection) for informed ones. These observations suggest that the mesoscopic variables of interest are the magnitude of the drift, the diffusion coefficient and the time-scales at which the anomalous and the asymptotic behavior respectively dominate transport, the latter being linked to the time scale at which the group reaches a decision. In order to estimate these summary statistics from the msd, we assumed that the configuration centroid follows an uncoupled Continuous Time Random Walk (CTRW) with smooth jump and waiting time pdf's. The mesoscopic transport equation for this type of random walk corresponds to an Advection-Diffusion Equation with Memory (ADEM). The introduction of the memory, and thus non-Markovian effects, is necessary in order to correctly account for the two time scales present. Although we were not able to calculate the memory directly from the individual-level rules, we show that it can estimated from a single, relatively short, simulation run using a Mittag-Leffler function as template. With this function it is possible to predict accurately the behavior of the msd, as well as the full pdf for the position of the centroid. The resulting ADEM is self-consistent in the sense that transport parameters estimated from the memory via a Kubo relationship coincide with those estimated from the moments of the jump size pdf of the associated CTRW for a large number of group sizes, proportions of informed individuals, and degrees of bias along the preferred direction. We also discuss the phase diagrams for the transport coefficients estimated from this method, where we notice velocity-precision trade-offs, where precision is a measure of the deviation of realized group orientations with respect to the informed direction. We also note that the time scale to collective decision is invariant

  4. Measurements and models of reactive transport in geological media

    NASA Astrophysics Data System (ADS)

    Berkowitz, Brian; Dror, Ishai; Hansen, Scott K.; Scher, Harvey

    2016-12-01

    Reactive chemical transport plays a key role in geological media across scales, from pore scale to aquifer scale. Systems can be altered by changes in solution chemistry and a wide variety of chemical transformations, including precipitation/dissolution reactions that cause feedbacks that directly affect the flow and transport regime. The combination of these processes with advective-dispersive-diffusive transport in heterogeneous media leads to a rich spectrum of complex dynamics. The principal challenge in modeling reactive transport is to account for the subtle effects of fluctuations in the flow field and species concentrations; spatial or temporal averaging generally suppresses these effects. Moreover, it is critical to ground model conceptualizations and test model outputs against laboratory experiments and field measurements. This review emphasizes the integration of these aspects, considering carefully designed and controlled experiments at both laboratory and field scales, in the context of development and solution of reactive transport models based on continuum-scale and particle tracking approaches. We first discuss laboratory experiments and field measurements that define the scope of the phenomena and provide data for model comparison. We continue by surveying models involving advection-dispersion-reaction equation and continuous time random walk formulations. The integration of measurements and models is then examined, considering a series of case studies in different frameworks. We delineate the underlying assumptions, and strengths and weaknesses, of these analyses, and the role of probabilistic effects. We also show the key importance of quantifying the spreading and mixing of reactive species, recognizing the role of small-scale physical and chemical fluctuations that control the initiation of reactions.

  5. An implicit dispersive transport algorithm for the US Geological Survey MOC3D solute-transport model

    USGS Publications Warehouse

    Kipp, K.L.; Konikow, L.F.; Hornberger, G.Z.

    1998-01-01

    This report documents an extension to the U.S. Geological Survey MOC3D transport model that incorporates an implicit-in-time difference approximation for the dispersive transport equation, including source/sink terms. The original MOC3D transport model (Version 1) uses the method of characteristics to solve the transport equation on the basis of the velocity field. The original MOC3D solution algorithm incorporates particle tracking to represent advective processes and an explicit finite-difference formulation to calculate dispersive fluxes. The new implicit procedure eliminates several stability criteria required for the previous explicit formulation. This allows much larger transport time increments to be used in dispersion-dominated problems. The decoupling of advective and dispersive transport in MOC3D, however, is unchanged. With the implicit extension, the MOC3D model is upgraded to Version 2. A description of the numerical method of the implicit dispersion calculation, the data-input requirements and output options, and the results of simulator testing and evaluation are presented. Version 2 of MOC3D was evaluated for the same set of problems used for verification of Version 1. These test results indicate that the implicit calculation of Version 2 matches the accuracy of Version 1, yet is more efficient than the explicit calculation for transport problems that are characterized by a grid Peclet number less than about 1.0.

  6. Fractal continuum model for tracer transport in a porous medium.

    PubMed

    Herrera-Hernández, E C; Coronado, M; Hernández-Coronado, H

    2013-12-01

    A model based on the fractal continuum approach is proposed to describe tracer transport in fractal porous media. The original approach has been extended to treat tracer transport and to include systems with radial and uniform flow, which are cases of interest in geoscience. The models involve advection due to the fluid motion in the fractal continuum and dispersion whose mathematical expression is taken from percolation theory. The resulting advective-dispersive equations are numerically solved for continuous and for pulse tracer injection. The tracer profile and the tracer breakthrough curve are evaluated and analyzed in terms of the fractal parameters. It has been found in this work that anomalous transport frequently appears, and a condition on the fractal parameter values to predict when sub- or superdiffusion might be expected has been obtained. The fingerprints of fractality on the tracer breakthrough curve in the explored parameter window consist of an early tracer breakthrough and long tail curves for the spherical and uniform flow cases, and symmetric short tailed curves for the radial flow case.

  7. Analytical and numerical study of travelling waves using the Maxwell-Cattaneo relaxation model extended to reaction-advection-diffusion systems.

    PubMed

    Sabelnikov, V A; Petrova, N N; Lipatnikov, A N

    2016-10-01

    Within the framework of the Maxwell-Cattaneo relaxation model extended to reaction-diffusion systems with nonlinear advection, travelling wave (TW) solutions are analytically investigated by studying a normalized reaction-telegraph equation in the case of the reaction and advection terms described by quadratic functions. The problem involves two governing parameters: (i) a ratio φ^{2} of the relaxation time in the Maxwell-Cattaneo model to the characteristic time scale of the reaction term, and (ii) the normalized magnitude N of the advection term. By linearizing the equation at the leading edge of the TW, (i) necessary conditions for the existence of TW solutions that are smooth in the entire interval of -∞<ζ<∞ are obtained, (ii) the smooth TW speed is shown to be less than the maximal speed φ^{-1} of the propagation of a substance, (iii) the lowest TW speed as a function of φ and N is determined. If the necessary condition of N>φ-φ^{-1} does not hold, e.g., if the magnitude N of the nonlinear advection is insufficiently high in the case of φ^{2}>1, then, the studied equation admits piecewise smooth TW solutions with sharp leading fronts that propagate at the maximal speed φ^{-1}, with the substance concentration or its spatial derivative jumping at the front. An increase in N can make the solution smooth in the entire spatial domain. Moreover, an explicit TW solution to the considered equation is found provided that N>φ. Subsequently, by invoking a principle of the maximal decay rate of TW solution at its leading edge, relevant TW solutions are selected in a domain of (φ,N) that admits the smooth TWs. Application of this principle to the studied problem yields transition from pulled (propagation speed is controlled by the TW leading edge) to pushed (propagation speed is controlled by the entire TW structure) TW solutions at N=N_{cr}=sqrt[1+φ^{2}], with the pulled (pushed) TW being relevant at smaller (larger) N. An increase in the normalized

  8. A novel method for analytically solving a radial advection-dispersion equation

    NASA Astrophysics Data System (ADS)

    Lai, Keng-Hsin; Liu, Chen-Wuing; Liang, Ching-Ping; Chen, Jui-Sheng; Sie, Bing-Ruei

    2016-11-01

    An analytical solution for solute transport in a radial flow field has a variety of practical applications in the study of the transport in push-pull/divergent/convergent flow tracer tests, aquifer remediation by pumping and aquifer storage and recovery. However, an analytical solution for radial advective-dispersive transport has been proven very difficult to develop and relatively few in subsurface hydrology have made efforts to do so, because variable coefficients in the governing partial differential equations. Most of the solutions for radial advective-dispersive transport presented in the literature have generally been solved semi-analytically with the final concentration values being obtained with the help of a numerical Laplace inversion. This study presents a novel solution strategy for analytically solving the radial advective-dispersive transport problem. A Laplace transform with respect to the time variable and a generalized integral transform technique with respect to the spatial variable are first performed to convert the transient governing partial differential equations into an algebraic equation. Subsequently, the algebraic equation is solved using simple algebraic manipulations, easily yielding the solution in the transformed domain. The solution in the original domain is ultimately obtained by successive applications of the Laplace and corresponding generalized integral transform inversions. A convergent flow tracer test is used to demonstrate the robustness of the proposed method for deriving an exact analytical solution to the radial advective-dispersive transport problem. The developed analytical solution is verified against a semi-analytical solution taken from the literature. The results show perfect agreement between our exact analytical solution and the semi-analytical solution. The solution method presented in this study can be applied to create more comprehensive analytical models for a great variety of radial advective

  9. How to Find a Bug in Ten Thousand Lines Transport Solver? Outline of Experiences from AN Advection-Diffusion Code Verification

    NASA Astrophysics Data System (ADS)

    Zamani, K.; Bombardelli, F.

    2011-12-01

    Almost all natural phenomena on Earth are highly nonlinear. Even simplifications to the equations describing nature usually end up being nonlinear partial differential equations. Transport (ADR) equation is a pivotal equation in atmospheric sciences and water quality. This nonlinear equation needs to be solved numerically for practical purposes so academicians and engineers thoroughly rely on the assistance of numerical codes. Thus, numerical codes require verification before they are utilized for multiple applications in science and engineering. Model verification is a mathematical procedure whereby a numerical code is checked to assure the governing equation is properly solved as it is described in the design document. CFD verification is not a straightforward and well-defined course. Only a complete test suite can uncover all the limitations and bugs. Results are needed to be assessed to make a distinction between bug-induced-defect and innate limitation of a numerical scheme. As Roache (2009) said, numerical verification is a state-of-the-art procedure. Sometimes novel tricks work out. This study conveys the synopsis of the experiences we gained during a comprehensive verification process which was done for a transport solver. A test suite was designed including unit tests and algorithmic tests. Tests were layered in complexity in several dimensions from simple to complex. Acceptance criteria defined for the desirable capabilities of the transport code such as order of accuracy, mass conservation, handling stiff source term, spurious oscillation, and initial shape preservation. At the begining, mesh convergence study which is the main craft of the verification is performed. To that end, analytical solution of ADR equation gathered. Also a new solution was derived. In the more general cases, lack of analytical solution could be overcome through Richardson Extrapolation and Manufactured Solution. Then, two bugs which were concealed during the mesh convergence

  10. Effects of demographic stochasticity on population persistence in advective media.

    PubMed

    Kolpas, Allison; Nisbet, Roger M

    2010-07-01

    Many populations live and disperse in advective media. A fundamental question, known as the "drift paradox" in stream ecology, is how a closed population can survive when it is constantly being transported downstream by the flow. Recent population-level models have focused on the role of diffusive movement in balancing the effects of advection, predicting critical conditions for persistence. Here, we formulate an individual-based stochastic analog of the model described in (Lutscher et al., SIAM Rev. 47(4):749-772, 2005) to quantify the effects of demographic stochasticity on persistence. Population dynamics are modeled as a logistic growth process and dispersal as a position-jump process on a finite domain divided into patches. When there is no correlation in the interpatch movement of residents, stochasticity simply smooths the persistence-extinction boundary. However, when individuals disperse in "packets" from one patch to another and the flow field is memoryless on the timescale of packet transport, the probability of persistence is greatly enhanced. The latter transport mechanism may be characteristic of larval dispersal in the coastal ocean or wind-dispersed seed pods.

  11. Minority Transportation Expenditure Allocation Model

    SciTech Connect

    Vyas, Anant D.; Santini, Danilo J.; Marik, Sheri K.

    1993-04-12

    MITRAM (Minority TRansportation expenditure Allocation Model) can project various transportation related attributes of minority (Black and Hispanic) and majority (white) populations. The model projects vehicle ownership, vehicle miles of travel, workers, new car and on-road fleet fuel economy, amount and share of household income spent on gasoline, and household expenditures on public transportation and taxis. MITRAM predicts reactions to sustained fuel price changes for up to 10 years after the change.

  12. Applications of a thermal-based two-source energy balance model using Priestley-Taylor approach for surface temperature partitioning under advective conditions

    NASA Astrophysics Data System (ADS)

    Song, Lisheng; Kustas, William P.; Liu, Shaomin; Colaizzi, Paul D.; Nieto, Hector; Xu, Ziwei; Ma, Yanfei; Li, Mingsong; Xu, Tongren; Agam, Nurit; Tolk, Judy A.; Evett, Steven R.

    2016-09-01

    In this study ground measured soil and vegetation component temperatures and composite temperature from a high spatial resolution thermal camera and a network of thermal-IR sensors collected in an irrigated maize field and in an irrigated cotton field are used to assess and refine the component temperature partitioning approach in the Two-Source Energy Balance (TSEB) model. A refinement to TSEB using a non-iterative approach based on the application of the Priestley-Taylor formulation for surface temperature partitioning and estimating soil evaporation from soil moisture observations under advective conditions (TSEB-A) was developed. This modified TSEB formulation improved the agreement between observed and modeled soil and vegetation temperatures. In addition, the TSEB-A model output of evapotranspiration (ET) and the components evaporation (E), transpiration (T) when compared to ground observations using the stable isotopic method and eddy covariance (EC) technique from the HiWATER experiment and with microlysimeters and a large monolithic weighing lysimeter from the BEAREX08 experiment showed good agreement. Difference between the modeled and measured ET measurements were less than 10% and 20% on a daytime basis for HiWATER and BEAREX08 data sets, respectively. The TSEB-A model was found to accurately reproduce the temporal dynamics of E, T and ET over a full growing season under the advective conditions existing for these irrigated crops located in arid/semi-arid climates. With satellite data this TSEB-A modeling framework could potentially be used as a tool for improving water use efficiency and conservation practices in water limited regions. However, TSEB-A requires soil moisture information which is not currently available routinely from satellite at the field scale.

  13. Overcoming diffusion-limited processes using enhanced advective fields

    SciTech Connect

    Rasmussen, T.C.

    1995-12-31

    Many subsurface cleanup activities focus on the remediation of organic contaminants using induced advective fields. Subsurface heterogeneities cause most advective transport to occur in more permeable zones, with transport from the lower permeability units being limited by diffusion to the higher permeable units. While diffusion rates can be enhanced using thermal sources, many of the treatment strategies, including pump and treat, vapor extraction and bioremediation, are limited by mass exchange rates between the higher and lower permeability sand and clay mixtures. Instead of relying on the enhancement of diffusion rates, it is proposed that remediation strategies should focus on the enhancement of induced advective transport rates through the lower permeability units. Injection-extraction strategies using crosshole and huff-and-puff methods are presented for maximizing advective transport through lower permeability units. Optimization of the design can incorporate diffusion-enhancement technologies, bionourishment, capillary confinement in the unsaturated zone, and DNAPL slurping.

  14. Stochastic models of intracellular transport

    NASA Astrophysics Data System (ADS)

    Bressloff, Paul C.; Newby, Jay M.

    2013-01-01

    The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a major challenge in modeling intracellular transport is to analyze stochastic processes within complex environments. Broadly speaking, there are two basic mechanisms for intracellular transport: passive diffusion and motor-driven active transport. Diffusive transport can be formulated in terms of the motion of an overdamped Brownian particle. On the other hand, active transport requires chemical energy, usually in the form of adenosine triphosphate hydrolysis, and can be direction specific, allowing biomolecules to be transported long distances; this is particularly important in neurons due to their complex geometry. In this review a wide range of analytical methods and models of intracellular transport is presented. In the case of diffusive transport, narrow escape problems, diffusion to a small target, confined and single-file diffusion, homogenization theory, and fractional diffusion are considered. In the case of active transport, Brownian ratchets, random walk models, exclusion processes, random intermittent search processes, quasi-steady-state reduction methods, and mean-field approximations are considered. Applications include receptor trafficking, axonal transport, membrane diffusion, nuclear transport, protein-DNA interactions, virus trafficking, and the self-organization of subcellular structures.

  15. Modelling of evaporation in a sparse millet crop using a two-source model including sensible heat advection within the canopy

    NASA Astrophysics Data System (ADS)

    Lund, M. R.; Soegaard, H.

    2003-09-01

    During two successive growing seasons meteorological measurements were made in a pearl millet field in the Sahel to investigate the evaporation process in relation to crop growth. The evaporation was measured by eddy correlation and simulated using the Shuttleworth Wallace (SW) model [Q. J. R. Meteorol. Soc. 111 (1985) 839-855]. To take sun height and multi-layer scattering into account a radiation balance model was formulated. The model indicates that partitioning of the net radiation between the vegetation and the soil may be estimated ( r2=0.94) from the fraction of diffuse radiation, the leaf area index and an attenuation coefficient, but that the attenuation coefficient may not be similar in different locations. To solve the SW-model with respect to the soil resistance an iterative solution was employed with the total evaporation estimated from the Bowen-ratio calculated from eddy correlation measurements. The procedure made it possible to derive stable estimates of soil resistance at soil evaporation rates down to 25 W m -2. The soil resistance was found to be in accordance with evaporation through a dry surface layer. The SW-model indicates, that advection of sensible heat from the dry soil to the plants, increases transpiration considerably. This will cause management techniques, such as mulching and dry farming, aimed at reducing soil evaporation to be less effective than might be anticipated. The effects of raising the leaf area index to improve the microclimate is discussed in relation to management of the available water and crop security.

  16. A finite-volume ELLAM for three-dimensional solute-transport modeling

    USGS Publications Warehouse

    Russell, T.F.; Heberton, C.I.; Konikow, L.F.; Hornberger, G.Z.

    2003-01-01

    A three-dimensional finite-volume ELLAM method has been developed, tested, and successfully implemented as part of the U.S. Geological Survey (USGS) MODFLOW-2000 ground water modeling package. It is included as a solver option for the Ground Water Transport process. The FVELLAM uses space-time finite volumes oriented along the streamlines of the flow field to solve an integral form of the solute-transport equation, thus combining local and global mass conservation with the advantages of Eulerian-Lagrangian characteristic methods. The USGS FVELLAM code simulates solute transport in flowing ground water for a single dissolved solute constituent and represents the processes of advective transport, hydrodynamic dispersion, mixing from fluid sources, retardation, and decay. Implicit time discretization of the dispersive and source/sink terms is combined with a Lagrangian treatment of advection, in which forward tracking moves mass to the new time level, distributing mass among destination cells using approximate indicator functions. This allows the use of large transport time increments (large Courant numbers) with accurate results, even for advection-dominated systems (large Peclet numbers). Four test cases, including comparisons with analytical solutions and benchmarking against other numerical codes, are presented that indicate that the FVELLAM can usually yield excellent results, even if relatively few transport time steps are used, although the quality of the results is problem-dependent.

  17. Modeling atmospheric deposition using a stochastic transport model

    SciTech Connect

    Buckley, R.L.

    1999-12-17

    An advanced stochastic transport model has been modified to include the removal mechanisms of dry and wet deposition. Time-dependent wind and turbulence fields are generated with a prognostic mesoscale numerical model and are used to advect and disperse individually released particles that are each assigned a mass. These particles are subjected to mass reduction in two ways depending on their physical location. Particles near the surface experience a decrease in mass using the concept of a dry deposition velocity, while the mass of particles located within areas of precipitation are depleted using a scavenging coefficient. Two levels of complexity are incorporated into the particle model. The simple case assumes constant values of dry deposition velocity and scavenging coefficient, while the more complex case varies the values according to meteorology, surface conditions, release material, and precipitation intensity. Instantaneous and cumulative dry and wet deposition are determined from the mass loss due to these physical mechanisms. A useful means of validating the model results is with data available from a recent accidental release of Cesium-137 from a steel-processing furnace in Algeciras, Spain in May, 1998. This paper describes the deposition modeling technique, as well as a comparison of simulated concentration and deposition with measurements taken for the Algeciras release.

  18. A mathematical model for the transport of a solute through a porous-walled tube

    NASA Astrophysics Data System (ADS)

    Griffiths, Ian; Shipley, Rebecca

    2012-02-01

    Predicting the distribution of solutes or particles in flows within porous-walled tubes is essential to inform the design of cross-flow filtration devices. Here we use Taylor-dispersion theory to derive a radially averaged model for solute transport in a tube with porous walls, where the wall Darcy permeability may vary both spatially and in time. Crucially, this model includes solute advection via both radial and axial flow components, as well as diffusion, and the advection, diffusion and uptake coefficients in the averaged equation are explicitly derived. The model is used to explore the specific example of a hollow-fibre membrane bioreactor for tissue engineering applications - here membrane fouling and cell population expansion mean that the effective membrane permeability is intrinsically coupled to both fluid flow and nutrient transport. We conclude by presenting design considerations that promote spatially uniform cell population growth.

  19. Forest Canopy Processes in a Regional Chemical Transport Model

    NASA Astrophysics Data System (ADS)

    Makar, Paul; Staebler, Ralf; Akingunola, Ayodeji; Zhang, Junhua; McLinden, Chris; Kharol, Shailesh; Moran, Michael; Robichaud, Alain; Zhang, Leiming; Stroud, Craig; Pabla, Balbir; Cheung, Philip

    2016-04-01

    Forest canopies have typically been absent or highly parameterized in regional chemical transport models. Some forest-related processes are often considered - for example, biogenic emissions from the forests are included as a flux lower boundary condition on vertical diffusion, as is deposition to vegetation. However, real forest canopies comprise a much more complicated set of processes, at scales below the "transport model-resolved scale" of vertical levels usually employed in regional transport models. Advective and diffusive transport within the forest canopy typically scale with the height of the canopy, and the former process tends to dominate over the latter. Emissions of biogenic hydrocarbons arise from the foliage, which may be located tens of metres above the surface, while emissions of biogenic nitric oxide from decaying plant matter are located at the surface - in contrast to the surface flux boundary condition usually employed in chemical transport models. Deposition, similarly, is usually parameterized as a flux boundary condition, but may be differentiated between fluxes to vegetation and fluxes to the surface when the canopy scale is considered. The chemical environment also changes within forest canopies: shading, temperature, and relativity humidity changes with height within the canopy may influence chemical reaction rates. These processes have been observed in a host of measurement studies, and have been simulated using site-specific one-dimensional forest canopy models. Their influence on regional scale chemistry has been unknown, until now. In this work, we describe the results of the first attempt to include complex canopy processes within a regional chemical transport model (GEM-MACH). The original model core was subdivided into "canopy" and "non-canopy" subdomains. In the former, three additional near-surface layers based on spatially and seasonally varying satellite-derived canopy height and leaf area index were added to the original model

  20. Applying Dispersive Changes to Lagrangian Particles in Groundwater Transport Models

    USGS Publications Warehouse

    Konikow, L.F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative. ?? US Government 2010.

  1. Applying dispersive changes to Lagrangian particles in groundwater transport models

    USGS Publications Warehouse

    Konikow, Leonard F.

    2010-01-01

    Method-of-characteristics groundwater transport models require that changes in concentrations computed within an Eulerian framework to account for dispersion be transferred to moving particles used to simulate advective transport. A new algorithm was developed to accomplish this transfer between nodal values and advecting particles more precisely and realistically compared to currently used methods. The new method scales the changes and adjustments of particle concentrations relative to limiting bounds of concentration values determined from the population of adjacent nodal values. The method precludes unrealistic undershoot or overshoot for concentrations of individual particles. In the new method, if dispersion causes cell concentrations to decrease during a time step, those particles in the cell having the highest concentration will decrease the most, and those with the lowest concentration will decrease the least. The converse is true if dispersion is causing concentrations to increase. Furthermore, if the initial concentration on a particle is outside the range of the adjacent nodal values, it will automatically be adjusted in the direction of the acceptable range of values. The new method is inherently mass conservative.

  2. Coupling the advection-dispersion equation with fully kinetic reversible/irreversible sorption terms to model radiocesium soil profiles in Fukushima Prefecture.

    PubMed

    Kurikami, Hiroshi; Malins, Alex; Takeishi, Minoru; Saito, Kimiaki; Iijima, Kazuki

    2017-02-17

    Radiocesium is an important environmental contaminant in fallout from nuclear reactor accidents and atomic weapons testing. A modified Diffusion-Sorption-Fixation (mDSF) model, based on the advection-dispersion equation, is proposed to describe the vertical migration of radiocesium in soils following fallout. The model introduces kinetics for the reversible binding of radiocesium. We test the model by comparing its results to depth profiles measured in Fukushima Prefecture, Japan, since 2011. The results from the mDSF model are a better fit to the measurement data (as quantified by R(2)) than results from a simple diffusion model and the original DSF model. The introduction of reversible sorption kinetics means that the exponential-shape depth distribution can be reproduced immediately following fallout. The initial relaxation mass depth of the distribution is determined by the diffusion length, which depends on the distribution coefficient, sorption rate and dispersion coefficient. The mDSF model captures the long tails of the radiocesium distribution at large depths, which are caused by different rates for kinetic sorption and desorption. The mDSF model indicates that depth distributions displaying a peak in activity below the surface are possible for soils with high organic matter content at the surface. The mDSF equations thus offers a physical basis for various types of radiocesium depth profiles observed in contaminated environments.

  3. Theoretical Transport Model for Tokamaks

    NASA Astrophysics Data System (ADS)

    Ghanem, Elsayed Mohammad

    In the present thesis work a theoretical transport model is suggested to study the anomalous transport of plasma particles and energy across the axisymmetric equilibrium toroidal magnetic flux surfaces in tokamaks. The model suggests a linear combination of two transport mechanisms; drift waves, which dominate the transport in the core region, and resistive ballooning modes, which dominate the transport in the edge region. The resulting unified model has been used in a predictive transport code to simulate the plasma transport in different tokamak experiments operating in both the ohmic heating phase and the low confinement mode (L-mode). For ohmic plasma, the model was used to study the saturation of energy confinement time at high plasma density. The effect of the resistive ballooning mode as a possible cause of the saturation phenomena has been investigated together with the effect of the ion temperature gradient mode. For the low confinement mode plasmas, the study has emphasized on using the model to obtain a scaling law for the energy confinement time with the various plasma parameters compared to the scaling laws that are derived based on fitting the experimental data.

  4. Modeling particle transport in downward and upward flows

    NASA Astrophysics Data System (ADS)

    Basha, H. A.; Culligan, P. J.

    2010-07-01

    Experimental data obtained for particle transport in downward and upward flows in smooth and rough porous media are analyzed at various flow rates. The data analysis and interpretation are aided through an analytical model with linear kinetics that assumes two sites for particle deposition within a medium, namely, reversible and irreversible, together with a dual mode of irreversible deposition. The bimodal particle transport model is obtained using the Green's function method and is capable of fitting, with reasonable accuracy, the observed transport and deposition behavior of particles. Approximations for advection-dominated flows are also obtained that could represent a simplified modeling tool. Expressions of the temporal moments are developed and algebraic equations are derived that express the model parameters in terms of the moments of the measured particle concentration distributions. The transport models helped define the relationship of the modeled parameters to flow velocity and media roughness. The fitting results show that the parameters for rough and smooth media vary in a systematic way with the pore fluid velocity. The results also reveal that flow direction has a significant influence on the mode and magnitude of irreversible particle deposition for the conditions investigated. For the same seepage velocity, the rate of particle deposition is greater for upward flows than for downward flows. Moreover, roughness effects increase the irreversible particle deposition in downward flows but have little effect in upward flows.

  5. LAYER DEPENDENT ADVECTION IN CMAQ

    EPA Science Inventory

    The advection methods used in CMAQ require that the Courant-Friedrichs-Lewy (CFL) condition be satisfied for numerical stability and accuracy. In CMAQ prior to version 4.3, the ADVSTEP algorithm established CFL-safe synchronization and advection timesteps that were uniform throu...

  6. Groundwater flow and transport modeling

    USGS Publications Warehouse

    Konikow, L.F.; Mercer, J.W.

    1988-01-01

    Deterministic, distributed-parameter, numerical simulation models for analyzing groundwater flow and transport problems have come to be used almost routinely during the past decade. A review of the theoretical basis and practical use of groundwater flow and solute transport models is used to illustrate the state-of-the-art. Because of errors and uncertainty in defining model parameters, models must be calibrated to obtain a best estimate of the parameters. For flow modeling, data generally are sufficient to allow calibration. For solute-transport modeling, lack of data not only limits calibration, but also causes uncertainty in process description. Where data are available, model reliability should be assessed on the basis of sensitivity tests and measures of goodness-of-fit. Some of these concepts are demonstrated by using two case histories. ?? 1988.

  7. The Global Modeling Initiative Assessment Model: Model Description, Integration and Testing of the Transport Shell

    SciTech Connect

    Rotman, D.A.; Tannahill, J.R.; Kinnison, D.E.; Connell, P.S.; Bergmann, D.; Proctor, D.; Rodriquez, J.M.; Lin, S.J.; Rood, R.B.; Prather, M.J.; Rasch, P.J.; Considine, D.B.; Ramaroson, R.; Kawa, S.R.

    2000-04-25

    We describe the three dimensional global stratospheric chemistry model developed under the NASA Global Modeling Initiative (GMI) to assess the possible environmental consequences from the emissions of a fleet of proposed high speed civil transport aircraft. This model was developed through a unique collaboration of the members of the GMI team. Team members provided computational modules representing various physical and chemical processes, and analysis of simulation results through extensive comparison to observation. The team members' modules were integrated within a computational framework that allowed transportability and simulations on massively parallel computers. A unique aspect of this model framework is the ability to interchange and intercompare different submodules to assess the sensitivity of numerical algorithms and model assumptions to simulation results. In this paper, we discuss the important attributes of the GMI effort, describe the GMI model computational framework and the numerical modules representing physical and chemical processes. As an application of the concept, we illustrate an analysis of the impact of advection algorithms on the dispersion of a NO{sub y}-like source in the stratosphere which mimics that of a fleet of commercial supersonic transports (High-Speed Civil Transport (HSCT)) flying between 17 and 20 kilometers.

  8. Illuminating reactive microbial transport in saturated porous media: Demonstration of a visualization method and conceptual transport model

    NASA Astrophysics Data System (ADS)

    Oates, Peter M.; Castenson, Catherine; Harvey, Charles F.; Polz, Martin; Culligan, Patricia

    2005-05-01

    We demonstrate a method to study reactive microbial transport in saturated translucent porous media using the bacteria Pseudomonas fluorescens 5RL genetically engineered to carry a plasmid with bioluminescence genes inducible by salicylate. Induced bacteria were injected into a cryolite grain filled chamber saturated with a sterile non-growth-promoting (phosphorus limited) chemical mixture containing salicylate as an aromatic hydrocarbon analogue. The amount of light produced by the bacteria serves as an estimator of the relative efficiency of aerobic biodegradation since bioluminescence is dependent on both salicylate and oxygen but only consumes oxygen. Bioluminescence was captured with a digital camera and analyzed to study the evolving spatial pattern of the bulk oxygen consuming reactions. As fluid flow transported the bacteria through the chamber, bioluminescence was observed to initially increase until an oxygen depletion zone developed behind the advective front. Bacterial transport was modeled with the advection dispersion equation and oxygen concentration was modeled assuming bacterial consumption via Monod kinetics with consideration of additional effects of rate-limited mass transfer from residual gas bubbles. Consistent with previous measurements, bioluminescence was considered proportional to oxygen consumed. Using the observed bioluminescence, model parameters were fit that were consistent with literature values and produced results in good agreement with the experimental data. These findings demonstrate potential for using this method to investigate the complex spatial and temporal dynamics of reactive microbial transport in saturated porous media.

  9. Modeling the transport of volatile organics in variably saturated media

    SciTech Connect

    Sleep, B.E.; Sykes, J.F. )

    1989-01-01

    The understanding of the processes of dissolution, volatilization, and gas-liquid partitioning in porous media is very limited. The few models which attempt to characterize the transport of volatile organics such as petroleum products and halogenated hydrocarbon solvents in variably saturated media all assume that mass transfer processes are at equilibrium. In addition, gas phase advection is neglected by assuming that gas phase pressures are uniformly atmospheric and that density gradients are negligible. In this study a model was developed to solve for water phase flow and transport and density dependent gas phase flow and transport. Simple expressions for dissolution, volatilization, and gas-liquid partitioning, employing the concept of an overall mass transfer coefficient, were incorporated into the model. The transport of trichloroethylene in a variably saturated vertical cross section, under a variety of conditions, was simulated. Results of the simulations appeared qualitatively correct. The importance of gas phase processes in increasing subsurface contamination from volatile organics, and in dissipating residual amounts of these substances, was demonstrated. The lack of similar analytical and/or numerical models, or suitable experimental studies, excluded the possibility of validating, or verifying, the model.

  10. Analytical model of reactive transport processes with spatially variable coefficients.

    PubMed

    Simpson, Matthew J; Morrow, Liam C

    2015-05-01

    Analytical solutions of partial differential equation (PDE) models describing reactive transport phenomena in saturated porous media are often used as screening tools to provide insight into contaminant fate and transport processes. While many practical modelling scenarios involve spatially variable coefficients, such as spatially variable flow velocity, v(x), or spatially variable decay rate, k(x), most analytical models deal with constant coefficients. Here we present a framework for constructing exact solutions of PDE models of reactive transport. Our approach is relevant for advection-dominant problems, and is based on a regular perturbation technique. We present a description of the solution technique for a range of one-dimensional scenarios involving constant and variable coefficients, and we show that the solutions compare well with numerical approximations. Our general approach applies to a range of initial conditions and various forms of v(x) and k(x). Instead of simply documenting specific solutions for particular cases, we present a symbolic worksheet, as supplementary material, which enables the solution to be evaluated for different choices of the initial condition, v(x) and k(x). We also discuss how the technique generalizes to apply to models of coupled multispecies reactive transport as well as higher dimensional problems.

  11. Validation of Travel-Time based Nonlinear Bioreactive Transport Models under Flow and Transport Dynamics

    NASA Astrophysics Data System (ADS)

    Sanz Prat, A.; Lu, C.; Cirpka, O. A.

    2014-12-01

    Travel-time based models are presented as an alternative to traditional spatially explicit models to solve nonlinear reactive-transport problems. The main advantage of the travel-time approach is that it does not require multi-dimensional characterization of physical and chemical parameters, and transport is one-dimensional. Spatial dimensions are replaced by groundwater travel time, defined as the time required by a water particle to reach an observation point or the outflow boundary, respectively. The fundamental hypothesis is that locations of the same groundwater age exhibit the same reactive-species concentrations. This is true in strictly advective-reactive transport in steady-state flows if the coefficients of reactions are uniform and the concentration is uniform over the inflow boundary. We hypothesize that the assumption still holds when adding some dispersion in coupled flow and transport dynamics. We compare a two-dimensional, spatially explicit, bioreactive, advective-dispersive transport model, considered as "virtual truth", with three 1-D travel-time based models which differ by the conceptualization of longitudinal dispersion: (i) neglecting dispersive mixing altogether, (ii) introducing a local-scale longitudinal dispersivity constant in time and space, and (iii) using an effective longitudinal dispersivity that increases linearly with distance. We consider biodegradation of organic matter catalyzed by non-competitive inhibitive microbial populations. The simulated inflow contains oxygen, nitrate, and DOC. The domain contains growing aerobic and denitrifying bacteria, the latter being inhibited by oxygen. This system is computed in 1-D, and in 2-D heterogeneous domains. We conclude that the conceptualization of nonlinear bioreactive transport in complex multi-dimensional domains by quasi 1-D travel-time models is valid for steady-state flow if the reactants are introduced over a wide cross-section, flow is at quasi-steady state, and dispersive

  12. How Hydrate Saturation Anomalies are Diffusively Constructed and Advectively Smoothed

    NASA Astrophysics Data System (ADS)

    Rempel, A. W.; Irizarry, J. T.; VanderBeek, B. P.; Handwerger, A. L.

    2015-12-01

    The physical processes that control the bulk characteristics of hydrate reservoirs are captured reasonably well by long-established model formulations that are rooted in laboratory-verified phase equilibrium parameterizations and field-based estimates of in situ conditions. More detailed assessments of hydrate distribution, especially involving the occurrence of high-saturation hydrate anomalies have been more difficult to obtain. Spatial variations in sediment properties are of central importance for modifying the phase behavior and promoting focussed fluid flow. However, quantitative predictions of hydrate anomaly development cannot be made rigorously without also addressing the changes in phase behavior and mechanical balances that accompany changes in hydrate saturation level. We demonstrate how pore-scale geometrical controls on hydrate phase stability can be parameterized for incorporation in simulations of hydrate anomaly development along dipping coarse-grained layers embedded in a more fine-grained background that is less amenable to fluid transport. Model simulations demonstrate how hydrate anomaly growth along coarse-layer boundaries is promoted by diffusive gas transport from the adjacent fine-grained matrix, while advective transport favors more distributed growth within the coarse-grained material and so effectively limits the difference between saturation peaks and background levels. Further analysis demonstrates how sediment contacts are unloaded once hydrate saturation reaches sufficient levels to form a load-bearing skeleton that can evolve to produce segregated nodules and lenses. Decomposition of such growth forms poses a significant geohazard that is expected to be particularly sensitive to perturbations induced by gas extraction. The figure illustrates the predicted evolution of hydrate saturation Sh in a coarse-grained dipping layer showing how prominent bounding hydrate anomalies (spikes) supplied by diffusive gas transport at early times

  13. Next Generation Transport Phenomenology Model

    NASA Technical Reports Server (NTRS)

    Strickland, Douglas J.; Knight, Harold; Evans, J. Scott

    2004-01-01

    This report describes the progress made in Quarter 3 of Contract Year 3 on the development of Aeronomy Phenomenology Modeling Tool (APMT), an open-source, component-based, client-server architecture for distributed modeling, analysis, and simulation activities focused on electron and photon transport for general atmospheres. In the past quarter, column emission rate computations were implemented in Java, preexisting Fortran programs for computing synthetic spectra were embedded into APMT through Java wrappers, and work began on a web-based user interface for setting input parameters and running the photoelectron and auroral electron transport models.

  14. Offline tracer transport modeling with global WRF model data

    NASA Astrophysics Data System (ADS)

    Belikov, Dmitry; Maksytov, Shamil; Zaripov, Radomir; Bart, Andrey; Starchenko, Alexander

    2013-04-01

    This work describes the one-way coupling between a global configuration of the Weather Research and Forecasting (WRF) weather prediction model (http://wrf-model.org/) and the National Institute for Environmental Studies (NIES) three-dimensional offline chemical transport model (version NIES-08.1i). The primary motivation for developing this coupled model has been to reduce transport errors in global-scale simulation of greenhouse gases through a more detailed description of the meteorological conditions. We have implemented a global configuration of WRF model (version 3.4.1, ARW core) with 2.5 degree horizontal resolution and 32 vertical levels. The WRF model was driving with NCEP Final Analysis (FNL) reanalysis using combined techniques: FDDA + Cyclic Incremental Correction (like in intermittent data assimilation). Time-averaged mass-coupled horizontal velocities on sigma levels with approach supposed by Nehrkorn et al. (2010) are calculated to drive NIES TM. The NIES TM is designed to simulate natural and anthropogenic synoptic-scale variations in atmospheric constituents at diurnal, seasonal and interannual timescales. The model uses a mass-conservative flux-form formulation that consists of a third-order van Leer advection scheme and a horizontal dry-air mass flux correction. The horizontal latitude-longitude grid is a reduced rectangular grid (i.e., the grid size is doubled several times approaching the poles), with an initial spatial resolution of 2.5 deg x 2.5 deg and 32 vertical levels from the surface up to the level of 3 hPa. A simulations of the atmospheric tracer are used to evaluate the performance of the coupled WRF-NIES model. Simulated distributions are validated against in situ observations and compared with output from "standard" version of NIES TM driven by the Japanese 25-year Reanalysis/the Japan Meteorological Agency Climate Data Assimilation System (JRA-25/JCDAS) dataset. Fields calculated by WRF and used to drive NIES TM were also evaluated

  15. Smoothed Particle Hydrodynamics Stochastic Model for Flow and Transport in Porous Media

    SciTech Connect

    Tartakovsky, Alexandre M.; Tartakovsky, Daniel M.; Meakin, Paul

    2008-11-03

    A meso-scale stochastic Lagrangian particle model was developed and used to simulate conservative and reactive transport in porous media. In the stochastic model, the fluid flow in a porous continuum is governed by a combination of a Langevin equation and continuity equation. Pore-scale velocity fluctuations, the source of hydrodynamic dispersion, are represented by the white noise. A smoothed particle hydrodynamics method was used to solve the governing equations. Changes in the properties of the fluid particles (e.g., the solute concentration) are governed by the advection-diffusion equation. The separate treatment of advective and diffusive mixing in the stochastic transport model is more realistic than the classical advection-dispersion theory, which uses a single effective diffusion coefficient (the dispersion coefficient) to describe both types of mixing leading to over-prediction of mixing induced effective reaction rates. The stochastic model predicts much lower reaction product concentrations in mixing induced reactions. In addition, the dispersion theory predicts more stable fronts (with a higher effective fractal dimension) than the stochastic model during the growth of Rayleigh-Taylor instabilities.

  16. Investigation of the influence of groundwater advection on energy extraction rates for sustainable borehole heat exchanger operation

    NASA Astrophysics Data System (ADS)

    Schelenz, Sophie; Dietrich, Peter; Vienken, Thomas

    2016-04-01

    A sustainable thermal exploitation of the shallow subsurface requires a precise understanding of all relevant heat transport processes. Currently, planning practice of shallow geothermal systems (especially for systems < 30 kW) focuses on conductive heat transport as the main energy source while the impact of groundwater flow as the driver for advective heat transport is neglected or strongly simplified. The presented study proves that those simplifications of complex geological and hydrogeological subsurface characteristics are insufficient for a precise evaluation of site-specific energy extraction rates. Based on synthetic model scenarios with varying subsurface conditions (groundwater flow velocity and aquifer thickness) the impact of advection on induced long term temperature changes in 5 and 10 m distance of the borehole heat exchanger is presented. Extending known investigations, this study enhances the evaluation of shallow geothermal energy extraction rates by considering conductive and advective heat transport under varying aquifer thicknesses. Further, it evaluates the impact of advection on installation lengths of the borehole heat exchanger to optimize the initial financial investment. Finally, an evaluation approach is presented that classifies relevant heat transport processes according to their Péclet number to enable a first quantitative assessment of the subsurface energy regime and recommend further investigation and planning procedures.

  17. Diffusion in pulsar wind nebulae: an investigation using magnetohydrodynamic and particle transport models

    NASA Astrophysics Data System (ADS)

    Porth, O.; Vorster, M. J.; Lyutikov, M.; Engelbrecht, N. E.

    2016-08-01

    We study the transport of high-energy particles in pulsar wind nebulae (PWN) using three-dimensional magnetohydrodynamic (MHD) and test-particle simulations, as well as a Fokker-Planck particle transport model. The latter includes radiative and adiabatic losses, diffusion, and advection on the background flow of the simulated MHD nebula. By combining the models, the spatial evolution of flux and photon index of the X-ray synchrotron emission is modelled for the three nebulae G21.5-0.9, the inner regions of Vela, and 3C 58, thereby allowing us to derive governing parameters: the magnetic field strength, average flow velocity, and spatial diffusion coefficient. For comparison, the nebulae are also modelled with the semi-analytic Kennel & Coroniti model but the Porth et al. model generally yields better fits to the observational data. We find that high velocity fluctuations in the turbulent nebula (downstream of the termination shock) give rise to efficient diffusive transport of particles, with average Péclet number close to unity, indicating that both advection and diffusion play an important role in particle transport. We find that the diffusive transport coefficient of the order of ˜ 2 × 1027(Ls/0.42 Ly) cm2 s- 1 (Ls is the size of the termination shock) is independent of energy up to extreme particle Lorentz factors of γp ˜ 1010.

  18. Mathematical Modeling of Kidney Transport

    PubMed Central

    Layton, Anita T.

    2013-01-01

    In addition to metabolic waste and toxin excretion, the kidney also plays an indispensable role in regulating the balance of water, electrolytes, nitrogen, and acid-base. In this review, we describe representative mathematical models that have been developed to better understand kidney physiology and pathophysiology, including the regulation of glomerular filtration, the regulation of renal blood flow by means of the tubuloglomerular feedback mechanisms and of the myogenic mechanism, the urine concentrating mechanism, epithelial transport, and regulation of renal oxygen transport. We discuss the extent to which these modeling efforts have expanded our understanding of renal function in both health and disease. PMID:23852667

  19. Investigation of some numerical issues in a chemistry-transport model: Gas-phase simulations

    NASA Astrophysics Data System (ADS)

    Mallet, Vivien; Pourchet, AdéLaïDe; QuéLo, Denis; Sportisse, Bruno

    2007-08-01

    Many numerical strategies have been specifically developed for chemistry-transport models. Since no exact solutions are available for 3-D real problems, there are only few insights to choose between alternative numerical schemes and approximations, or to estimate the performance discrepancy between two approaches. However it is possible to assess the importance of numerical approximations through the comparison of different strategies. We estimated the impact of several numerical schemes for advection, diffusion and stiff chemistry. We also addressed operator splitting with different methods and operator orders. The study is performed with a gas-phase Eulerian model from the modeling platform Polyphemus. It is applied to ozone forecasts mainly over Europe, with focus on a few key species: ozone, nitric oxide, nitrogen dioxide, sulfur dioxide and hydroxy radical. The outcome is a ranking of the most sensitive numerical choices. It stresses the prominent impact of the advection scheme and of the splitting time step.

  20. The China Clipper - Fast advective transport of radon-rich air from the Asian boundary layer to the upper troposphere near California

    NASA Technical Reports Server (NTRS)

    Kritz, Mark A.; Le Roulley, Jean-Claude; Danielsen, Edwin F.

    1990-01-01

    A series of upper tropospheric radon concentration measurements made over the eastern Pacific and west coast of the U.S. during the summers of 1983 and 1984 has revealed the occurrence of unexpectedly high radon concentrations for 9 of the 61 measurements. A frequency distribution plot of the set of 61 observations shows a distinct bimodal distribution, with approximately 2/5 of the observations falling close to 1 pCi/SCM, and 3/5 falling in a high concentration mode centered at about 11 pCi/SCM. Trajectory and synoptic analyses for two of the flights on which such high radon concentrations were observed indicate that this radon-rich air originated in the Asian boundary layer, ascended in cumulus updrafts, and was carried eastward in the fast moving air on the anticyclonic side of the upper tropospheric jet. The results suggest that the combination of rapid vertical transport from the surface boundary layer to the upper troposphere, followed by rapid horizontal transport eastward represents an efficient mode of long-transport for other, chemically reactive atmospheric trace constituents.

  1. iCFD: Interpreted Computational Fluid Dynamics - Degeneration of CFD to one-dimensional advection-dispersion models using statistical experimental design - The secondary clarifier.

    PubMed

    Guyonvarch, Estelle; Ramin, Elham; Kulahci, Murat; Plósz, Benedek Gy

    2015-10-15

    The present study aims at using statistically designed computational fluid dynamics (CFD) simulations as numerical experiments for the identification of one-dimensional (1-D) advection-dispersion models - computationally light tools, used e.g., as sub-models in systems analysis. The objective is to develop a new 1-D framework, referred to as interpreted CFD (iCFD) models, in which statistical meta-models are used to calculate the pseudo-dispersion coefficient (D) as a function of design and flow boundary conditions. The method - presented in a straightforward and transparent way - is illustrated using the example of a circular secondary settling tank (SST). First, the significant design and flow factors are screened out by applying the statistical method of two-level fractional factorial design of experiments. Second, based on the number of significant factors identified through the factor screening study and system understanding, 50 different sets of design and flow conditions are selected using Latin Hypercube Sampling (LHS). The boundary condition sets are imposed on a 2-D axi-symmetrical CFD simulation model of the SST. In the framework, to degenerate the 2-D model structure, CFD model outputs are approximated by the 1-D model through the calibration of three different model structures for D. Correlation equations for the D parameter then are identified as a function of the selected design and flow boundary conditions (meta-models), and their accuracy is evaluated against D values estimated in each numerical experiment. The evaluation and validation of the iCFD model structure is carried out using scenario simulation results obtained with parameters sampled from the corners of the LHS experimental region. For the studied SST, additional iCFD model development was carried out in terms of (i) assessing different density current sub-models; (ii) implementation of a combined flocculation, hindered, transient and compression settling velocity function; and (iii

  2. Volcanic ash forecast transport and dispersion (VAFTAD) model

    SciTech Connect

    Heffter, J.L.; Stunder, B.J.B.

    1993-12-01

    The National Oceanic and Atmospheric Administration (NOAA) Air Resources Laboratory (ARL) has developed a Volcanic Ash Forecast Transport And Dispersion (VAFTAD) model for emergency response use focusing on hazards to aircraft flight operations. The model is run on a workstation at ARL. Meteorological input for the model is automatically downloaded from the NOAA National Meteorological Center (NMC) twice-daily forecast model runs to ARL. Additional input for VAFTAD ragarding the volcanic eruption is supplied by the user guided by monitor prompts. The model calculates transport and dispersion of volcanic ash from an initial ash cloud that has reached its maximum height within 3 h of eruption time. The model assumes that spherical ash particles of diameters ranging from 0.3 to 30 micrometers are distributed throughout the initial cloud with a particle number distribution based on Mount St. Helens and Redoubt Volcano eruptions. Particles are advected horizontally and vertically by the winds and fall according to Stoke`s law with a slip correction. A bivariate-normal distribution is used for horizontally diffusing the cloud and determining ash concentrations. Model output gives maps with symbols representing relative concentrations in three flight layers, and throughout the entire ash cloud, for sequential 6- and 12-h time intervals. A verification program for VAFTAD has been started. Results subjectively comparing model ash cloud forecasts with satellite imagery for three separate 1992 eruptions of Mount Spurr in Alaska have been most encouraging.

  3. A case against Kd-based transport models: natural attenuation at a mill tailings site

    NASA Astrophysics Data System (ADS)

    Zhu, Chen

    2003-04-01

    This study compares numerical modeling results of contaminant transport using a multi-component coupled reactive mass transport model and a distribution coefficient ( Kd)-based transport model. The study site is a contaminated groundwater aquifer underneath a uranium mill tailings pond in the western USA. Advective-dispersive-reactive transport is simulated for a 5-year period of intrusion of tailings fluid into the shallow aquifer, followed by flushing with uncontaminated upgradient groundwater for 1600 years. The coupled model shows that groundwater-sediment interactions result in multiple concentration waves, strong interactions among solutes, and chemical heterogeneity in both space and time. As a result, calculated Kd values vary spatially and temporarily. None of these characteristics can be simulated with a Kd-based model. These results illustrate the shortcomings of the Kd approach, the usage of which is prevalent in the regulatory environment.

  4. Simulation of reactive geochemical transport in groundwater using a semi-analytical screening model

    NASA Astrophysics Data System (ADS)

    McNab, Walt W.

    1997-10-01

    A reactive geochemical transport model, based on a semi-analytical solution to the advective-dispersive transport equation in two dimensions, is developed as a screening tool for evaluating the impact of reactive contaminants on aquifer hydrogeochemistry. Because the model utilizes an analytical solution to the transport equation, it is less computationally intensive than models based on numerical transport schemes, is faster, and it is not subject to numerical dispersion effects. Although the assumptions used to construct the model preclude consideration of reactions between the aqueous and solid phases, thermodynamic mineral saturation indices are calculated to provide qualitative insight into such reactions. Test problems involving acid mine drainage and hydrocarbon biodegradation signatures illustrate the utility of the model in simulating essential hydrogeochemical phenomena.

  5. Modeling microorganism transport and survival in the subsurface.

    PubMed

    Bradford, Scott A; Wang, Yusong; Kim, Hyunjung; Torkzaban, Saeed; Šimůnek, Jiri

    2014-03-01

    An understanding of microbial transport and survival in the subsurface is needed for public health, environmental applications, and industrial processes. Much research has therefore been directed to quantify mechanisms influencing microbial fate, and the results demonstrate a complex coupling among many physical, chemical, and biological factors. Mathematical models can be used to help understand and predict the complexities of microbial transport and survival in the subsurface under given assumptions and conditions. This review highlights existing model formulations that can be used for this purpose. In particular, we discuss models based on the advection-dispersion equation, with terms for kinetic retention to solid-water and/or air-water interfaces; blocking and ripening; release that is dependent on the resident time, diffusion, and transients in solution chemistry, water velocity, and water saturation; and microbial decay (first-order and Weibull) and growth (logistic and Monod) that is dependent on temperature, nutrient concentration, and/or microbial concentration. We highlight a two-region model to account for microbe migration in the vicinity of a solid phase and use it to simulate the coupled transport and survival of species under a variety of environmentally relevant scenarios. This review identifies challenges and limitations of models to describe and predict microbial transport and survival. In particular, many model parameters have to be optimized to simulate a diversity of observed transport, retention, and survival behavior at the laboratory scale. Improved theory and models are needed to predict the fate of microorganisms in natural subsurface systems that are highly dynamic and heterogeneous.

  6. Distributed Model for Overland Hydrology, Sediment and Chemical Transport in Watersheds

    NASA Astrophysics Data System (ADS)

    Zhang, Z.; Johnson, B. E.; Dortch, M. S.

    2004-12-01

    Contaminants from non-point or distributed sources can adversely affect the quality of downstream waters and groundwater. Reliable models can help understanding the fate and transport of contaminants on the overland as well as the shallow subsurface and lead to better management strategies of the environmental response and security. In this study, a watershed is represented by discretizing contributing areas into a cascade of one dimensional (1D) overland flow using DEM data. A distributed watershed model is developed to simulate overland flow and processes of sediment and chemical detachment and their transport in runoff. The model, consisting of linked hydrology, sediment and chemical transport components, is physically based and process oriented. In the model, the overland flow component uses fully implicit nonlinear finite difference scheme combined with a linear scheme to numerically solve the 1D kinematic wave equations. The erosion and sediment transport component simulates the movement of eroded soil along with the movement of surface water, calculates the sediment transport capacity and the potential sediment supply, chooses whichever is less and routes it throughout the watershed. Erosion is the sum of splash detachment by raindrops and flow detachment by runoff. The process of chemical transport in the soluble phase is simulated by a 1D advection, diffusion and adsorption-desorption processes equation. Chemical transport by suspended sediment is described by the advection-diffusion equations with the sink-source term including erosion-deposition exchange processes. Both sediment and chemical transport components are developed as separate blocks of the watershed overland modeling system. A 1D model in overland studies can provide plenty of useful information without requiring many input parameters. The model will be incorporated into the Army Risk Assessment Modeling System (ARAMS) as a watershed module to satisfy the need for simulating hydrological

  7. EBS Radionuclide Transport Abstraction

    SciTech Connect

    J. Prouty

    2006-07-14

    The purpose of this report is to develop and analyze the engineered barrier system (EBS) radionuclide transport abstraction model, consistent with Level I and Level II model validation, as identified in Technical Work Plan for: Near-Field Environment and Transport: Engineered Barrier System: Radionuclide Transport Abstraction Model Report Integration (BSC 2005 [DIRS 173617]). The EBS radionuclide transport abstraction (or EBS RT Abstraction) is the conceptual model used in the total system performance assessment (TSPA) to determine the rate of radionuclide releases from the EBS to the unsaturated zone (UZ). The EBS RT Abstraction conceptual model consists of two main components: a flow model and a transport model. Both models are developed mathematically from first principles in order to show explicitly what assumptions, simplifications, and approximations are incorporated into the models used in the TSPA. The flow model defines the pathways for water flow in the EBS and specifies how the flow rate is computed in each pathway. Input to this model includes the seepage flux into a drift. The seepage flux is potentially split by the drip shield, with some (or all) of the flux being diverted by the drip shield and some passing through breaches in the drip shield that might result from corrosion or seismic damage. The flux through drip shield breaches is potentially split by the waste package, with some (or all) of the flux being diverted by the waste package and some passing through waste package breaches that might result from corrosion or seismic damage. Neither the drip shield nor the waste package survives an igneous intrusion, so the flux splitting submodel is not used in the igneous scenario class. The flow model is validated in an independent model validation technical review. The drip shield and waste package flux splitting algorithms are developed and validated using experimental data. The transport model considers advective transport and diffusive transport

  8. WASP TRANSPORT MODELING AND WASP ECOLOGICAL MODELING

    EPA Science Inventory

    A combination of lectures, demonstrations, and hands-on excercises will be used to introduce pollutant transport modeling with the U.S. EPA's general water quality model, WASP (Water Quality Analysis Simulation Program). WASP features include a user-friendly Windows-based interfa...

  9. Relative importance of gas-phase diffusive and advective tichloroethene (TCE) fluxes in the unsaturated zone under natural conditions.

    PubMed

    Choi, Jee-Won; Tillman, Fred D; Smith, James A

    2002-07-15

    It was hypothesized that atmospheric pressure changes can induce gas flow in the unsaturated zone to such an extent that the advective flux of organic vapors in unsaturated-zone soil gas can be significant relative to the gas-phase diffusion flux of these organic vapors. To test this hypothesis, a series of field measurements and computer simulations were conducted to simulate and compare diffusion and advection fluxes at a trichloroethene-contaminated field site at Picatinny Arsenal in north-central New Jersey. Moisture content temperature, and soil-gas pressure were measured at multiple depths (including at land surface) and times for three distinct sampling events in August 1996, October 1996, and August 1998. Gas pressures in the unsaturated zone changed significantly over time and followed changes measured in the atmosphere. Gas permeability of the unsaturated zone was estimated using data from a variety of sources, including laboratory gas permeability measurements made on intact soil cores from the site, a field air pump test, and calibration of a gas-flow model to the transient, one-dimensional gas pressure data. The final gas-flow model reproduced small pressure gradients as observed in the field during the three distinct sampling events. The velocities calculated from the gas-flow model were used in transient, one-dimensional transport simulations to quantify advective and diffusive fluxes of TCE vapor from the subsurface to the atmosphere as a function of time for each sampling event. Effective diffusion coefficients used for these simulations were determined from independent laboratory measurements made on intact soil cores collected from the field site. For two of the three sampling events (August 1996 and August 1998), the TCE gas-phase diffusion flux at land surface was significantly greater than the advection flux over the entire sampling period. For the second sampling event (October 1996), the advection flux was frequently larger than the

  10. Modeling axisymmetric flow and transport

    USGS Publications Warehouse

    Langevin, C.D.

    2008-01-01

    Unmodified versions of common computer programs such as MODFLOW, MT3DMS, and SEAWAT that use Cartesian geometry can accurately simulate axially symmetric ground water flow and solute transport. Axisymmetric flow and transport are simulated by adjusting several input parameters to account for the increase in flow area with radial distance from the injection or extraction well. Logarithmic weighting of interblock transmissivity, a standard option in MODFLOW, can be used for axisymmetric models to represent the linear change in hydraulic conductance within a single finite-difference cell. Results from three test problems (ground water extraction, an aquifer push-pull test, and upconing of saline water into an extraction well) show good agreement with analytical solutions or with results from other numerical models designed specifically to simulate the axisymmetric geometry. Axisymmetric models are not commonly used but can offer an efficient alternative to full three-dimensional models, provided the assumption of axial symmetry can be justified. For the upconing problem, the axisymmetric model was more than 1000 times faster than an equivalent three-dimensional model. Computational gains with the axisymmetric models may be useful for quickly determining appropriate levels of grid resolution for three-dimensional models and for estimating aquifer parameters from field tests.

  11. Modeling axisymmetric flow and transport.

    PubMed

    Langevin, Christian D

    2008-01-01

    Unmodified versions of common computer programs such as MODFLOW, MT3DMS, and SEAWAT that use Cartesian geometry can accurately simulate axially symmetric ground water flow and solute transport. Axisymmetric flow and transport are simulated by adjusting several input parameters to account for the increase in flow area with radial distance from the injection or extraction well. Logarithmic weighting of interblock transmissivity, a standard option in MODFLOW, can be used for axisymmetric models to represent the linear change in hydraulic conductance within a single finite-difference cell. Results from three test problems (ground water extraction, an aquifer push-pull test, and upconing of saline water into an extraction well) show good agreement with analytical solutions or with results from other numerical models designed specifically to simulate the axisymmetric geometry. Axisymmetric models are not commonly used but can offer an efficient alternative to full three-dimensional models, provided the assumption of axial symmetry can be justified. For the upconing problem, the axisymmetric model was more than 1000 times faster than an equivalent three-dimensional model. Computational gains with the axisymmetric models may be useful for quickly determining appropriate levels of grid resolution for three-dimensional models and for estimating aquifer parameters from field tests.

  12. Modeling Radionuclide Transport in Clays

    SciTech Connect

    Zheng, Liange; Li, Lianchong; Rutqvist, Jonny; Liu, Hui -Hai; Birkholzer, Jens

    2012-05-01

    tests (e.g. Garcia-Gutierrez et al. 2006, Soler et al. 2008, van Loon et al. 2004, Wu et al. 2009) and numerical modeling (de Windt et al. 2003; 2006), the effects of THMC processes on radionuclide transport are not fully investigated. The objectives of the research activity documented in this report are to improve a modeling capability for coupled THMC processes and to use it to evaluate the THMC impacts on radionuclide transport. This research activity addresses several key Features, Events and Processes (FEPs), including FEP 2.2.08, Hydrologic Processes, FEP 2.2.07, Mechanical Processes and FEP 2.2.09, Chemical Process— Transport, by studying near-field coupled THMC processes in clay/shale repositories and their impacts on radionuclide transport. This report documents the progress that has been made in FY12. Section 2 discusses the development of THMC modeling capability. Section 3 reports modeling results of THMC impacts on radionuclide transport. Planned work for the remaining months of FY12 and proposed work for FY13 are presented in Section 4.

  13. Long-range transport of anthropogenic sulfur in an on-line tracer model

    SciTech Connect

    Dastoor, A.P.

    1996-12-31

    An Eulerian global meteorological tracer transport model has been constructed for simulating the long range transport of anthropogenic sulfur. The advantage of this model is that the physical processes in the atmosphere, advection and chemical conversions are calculated within one consistent modeling system. The global model presented here includes the dynamics of meteorological and tracer fields, thermodynamics, cloud processes, turbulent boundary layer mixing, multiple 3-dimensional anthropogenic sulfur emission sources, dry and aqueous-phase chemical processes for sulfur, dry deposition process and the precipitation scavenging of sulfur. In contrast to an off-line chemical transport model the dynamic global tracer model is capable of studying the interaction between pollutant, radiative and hydrological budgets and atmospheric circulation.

  14. Evaluation of Stratospheric Transport in New 3D Models Using the Global Modeling Initiative Grading Criteria

    NASA Technical Reports Server (NTRS)

    Strahan, Susan E.; Douglass, Anne R.; Einaudi, Franco (Technical Monitor)

    2001-01-01

    The Global Modeling Initiative (GMI) Team developed objective criteria for model evaluation in order to identify the best representation of the stratosphere. This work created a method to quantitatively and objectively discriminate between different models. In the original GMI study, 3 different meteorological data sets were used to run an offline chemistry and transport model (CTM). Observationally-based grading criteria were derived and applied to these simulations and various aspects of stratospheric transport were evaluated; grades were assigned. Here we report on the application of the GMI evaluation criteria to CTM simulations integrated with a new assimilated wind data set and a new general circulation model (GCM) wind data set. The Finite Volume Community Climate Model (FV-CCM) is a new GCM developed at Goddard which uses the NCAR CCM physics and the Lin and Rood advection scheme. The FV-Data Assimilation System (FV-DAS) is a new data assimilation system which uses the FV-CCM as its core model. One year CTM simulations of 2.5 degrees longitude by 2 degrees latitude resolution were run for each wind data set. We present the evaluation of temperature and annual transport cycles in the lower and middle stratosphere in the two new CTM simulations. We include an evaluation of high latitude transport which was not part of the original GMI criteria. Grades for the new simulations will be compared with those assigned during the original GMT evaluations and areas of improvement will be identified.

  15. Sediment and radionuclide transport in rivers: radionuclide transport modeling for Cattaraugus and Buttermilk Creeks, New York

    SciTech Connect

    Onishi, Y.; Yabusaki, S.B.; Kincaid, C.T.; Skaggs, R.L.; Walters, W.H.

    1982-12-01

    SERATRA, a transient, two-dimensional (laterally-averaged) computer model of sediment-contaminant transport in rivers, satisfactorily resolved the distribution of sediment and radionuclide concentrations in the Cattaraugus Creek stream system in New York. By modeling the physical processes of advection, diffusion, erosion, deposition, and bed armoring, SERATRA routed three sediment size fractions, including cohesive soils, to simulate three dynamic flow events. In conjunction with the sediment transport, SERATRA computed radionuclide levels in dissolved, suspended sediment, and bed sediment forms for four radionuclides (/sup 137/Cs, /sup 90/Sr, /sup 239/ /sup 240/Pu, and /sup 3/H). By accounting for time-dependent sediment-radionuclide interaction in the water column and bed, SERATA is a physically explicit model of radionuclide fate and migration. Sediment and radionuclide concentrations calculated by SERATA in the Cattaraugus Creek stream system are in reasonable agreement with measured values. SERATRA is in the field performance phase of an extensive testing program designed to establish the utility of the model as a site assessment tool. The model handles not only radionuclides but other contaminants such as pesticides, heavy metals and other toxic chemicals. Now that the model has been applied to four field sites, including the latest study of the Cattaraugus Creek stream system, it is recommended that a final model be validated through comparison of predicted results with field data from a carefully controlled tracer test at a field site. It is also recommended that a detailed laboratory flume be tested to study cohesive sediment transport, deposition, and erosion characteristics. The lack of current understanding of these characteristics is one of the weakest areas hindering the accurate assessment of the migration of radionuclides sorbed by fine sediments of silt and clay.

  16. Critical review: Radionuclide transport, sediment transport, and water quality mathematical modeling; and radionuclide adsorption/desorption mechanisms

    SciTech Connect

    Onishi, Y.; Serne, R.J.; Arnold, E.M.; Cowan, C.E.; Thompson, F.L.

    1981-01-01

    This report describes the results of a detailed literature review of radionuclide transport models applicable to rivers, estuaries, coastal waters, the Great Lakes, and impoundments. Some representatives sediment transport and water quality models were also reviewed to evaluate if they can be readily adapted to radionuclide transport modeling. The review showed that most available transport models were developed for dissolved radionuclide in rivers. These models include the mechanisms of advection, dispersion, and radionuclide decay. Since the models do not include sediment and radionuclide interactions, they are best suited for simulating short-term radionuclide migration where: (1) radionuclides have small distribution coefficients; (2) sediment concentrations in receiving water bodies are very low. Only 5 of the reviewed models include full sediment and radionuclide interactions: CHMSED developed by Fields; FETRA SERATRA, and TODAM developed by Onishi et al, and a model developed by Shull and Gloyna. The 5 models are applicable to cases where: (1) the distribution coefficient is large; (2) sediment concentrations are high; or (3) long-term migration and accumulation are under consideration. The report also discusses radionuclide absorption/desorption distribution ratios and addresses adsorption/desorption mechanisms and their controlling processes for 25 elements under surface water conditions. These elements are: Am, Sb, C, Ce, Cm, Co, Cr, Cs, Eu, I, Fe, Mn, Np, P, Pu, Pm, Ra, Ru, Sr, Tc, Th, {sup 3}H, U, Zn and Zr.

  17. An analytical model for predicting transport in a coupled vadose/phreatic system

    SciTech Connect

    Tomasko, D.

    1997-05-01

    A simple analytical model is presented for predicting the transport of a contaminant in both the unsaturated (vadose) and saturated (phreatic) zones following a surficial spill. The model incorporates advection, dispersion, adsorption, and first-order decay in both zones and couples the transport processes at the water table. The governing equation is solved by using the method of Laplace transforms, with numerical inversion of the Laplace space equation for concentration. Because of the complexity of the functional form for the Laplace space solution, a numerical methodology using the real and imaginary parts of a Fourier series was implemented. To reduce conservatism in the model, dilution at the water table was also included. Verification of the model is demonstrated by its ability to reproduce the source history at the surface and to replicate appropriate one-dimensional transport through either the vadose or phreatic zone. Because of its simplicity and lack of detailed input data requirements, the model is recommended for scoping calculations.

  18. Assessment of advective porewater movement affecting mass transfer of hydrophobic organic contaminants in marine intertidal sediment.

    PubMed

    Cho, Yeo-Myoung; Werner, David; Moffett, Kevan B; Luthy, Richard G

    2010-08-01

    Advective porewater movement and molecular diffusion are important factors affecting the mass transfer of hydrophobic organic compounds (HOCs) in marsh and mudflat sediments. This study assessed porewater movement in an intertidal mudflat in South Basin adjacent to Hunters Point Shipyard, San Francisco, CA, where a pilot-scale test of sorbent amendment assessed the in situ stabilization of polychlorinated biphenyls (PCBs). To quantify advective porewater movement within the top 0-60 cm sediment layer, we used temperature as a tracer and conducted heat transport analysis using 14-day data from multidepth sediment temperature logging stations and one-dimensional heat transport simulations. The best-fit conditions gave an average Darcy velocity of 3.8cm/d in the downward vertical direction for sorbent-amended sediment with a plausible range of 0 cm/d to 8 cm/d. In a limiting case with no net advection, the best-fit depth-averaged mechanical dispersion coefficient was 2.2x10(-7) m2/s with a range of 0.9x10(-7) m2/s to 5.6x10(-7) m2/s. The Peclet number for PCB mobilization showed that molecular diffusion would control PCB mass transfer from sediment to sorbent particles for the case of uniform distribution of sorbent. However, the advective flow and mechanical dispersion in the test site would significantly benefit the stabilization effect of heterogeneously distributed sorbent by acting to smooth out the heterogeneities and homogenizing pollutant concentrations across the entire bioactive zone. These measurements and modeling techniques on intertidal sediment porewater transport could be useful for the development of more reliable mass transfer models for the prediction of contaminant release within the sediment bed, the movement of HOCs in the intertidal aquatic environment, and in situ sequestration by sorbent addition.

  19. Testing a method-of-characteristics model of three-dimensional solute transport in ground water

    USGS Publications Warehouse

    Goode, Daniel J.; Konikow, Leonard F.; ,

    1991-01-01

    A new three-dimensional model of solute transport in groundwater that is based on a widely used two-dimensional method of characteristics model and is coupled to a modular finite-difference flow model is under development. The model's accuracy for ideal aquifers having homogeneous properties, uniform boundary conditions, and steady flow along a grid direction is demonstrated by comparison with conventional analytical solutions. The effect of spatially and temporally variable flow velocities is investigated by comparison with special analytical solutions. To test the performance of the model for typical hydrogeologic conditions, we compare results with those from other models as well as with results from the same model using smaller grid spacings and time steps. This model generally provides accurate results for realistic simulations, and is particularly efficient for advection-dominated transport.

  20. Coupled transport in rotor models

    NASA Astrophysics Data System (ADS)

    Iubini, S.; Lepri, S.; Livi, R.; Politi, A.

    2016-08-01

    Steady nonequilibrium states are investigated in a one-dimensional setup in the presence of two thermodynamic currents. Two paradigmatic nonlinear oscillators models are investigated: an XY chain and the discrete nonlinear Schrödinger equation. Their distinctive feature is that the relevant variable is an angle in both cases. We point out the importance of clearly distinguishing between energy and heat flux. In fact, even in the presence of a vanishing Seebeck coefficient, a coupling between (angular) momentum and energy arises, mediated by the unavoidable presence of a coherent energy flux. Such a contribution is the result of the ‘advection’ induced by the position-dependent angular velocity. As a result, in the XY model, the knowledge of the two diagonal elements of the Onsager matrix suffices to reconstruct its transport properties. The analysis of the nonequilibrium steady states finally allows to strengthen the connection between the two models.

  1. Transport Properties for Combustion Modeling

    SciTech Connect

    Brown, N.J.; Bastein, L.; Price, P.N.

    2010-02-19

    This review examines current approximations and approaches that underlie the evaluation of transport properties for combustion modeling applications. Discussed in the review are: the intermolecular potential and its descriptive molecular parameters; various approaches to evaluating collision integrals; supporting data required for the evaluation of transport properties; commonly used computer programs for predicting transport properties; the quality of experimental measurements and their importance for validating or rejecting approximations to property estimation; the interpretation of corresponding states; combination rules that yield pair molecular potential parameters for unlike species from like species parameters; and mixture approximations. The insensitivity of transport properties to intermolecular forces is noted, especially the non-uniqueness of the supporting potential parameters. Viscosity experiments of pure substances and binary mixtures measured post 1970 are used to evaluate a number of approximations; the intermediate temperature range 1 < T* < 10, where T* is kT/{var_epsilon}, is emphasized since this is where rich data sets are available. When suitable potential parameters are used, errors in transport property predictions for pure substances and binary mixtures are less than 5 %, when they are calculated using the approaches of Kee et al.; Mason, Kestin, and Uribe; Paul and Warnatz; or Ern and Giovangigli. Recommendations stemming from the review include (1) revisiting the supporting data required by the various computational approaches, and updating the data sets with accurate potential parameters, dipole moments, and polarizabilities; (2) characterizing the range of parameter space over which the fit to experimental data is good, rather than the current practice of reporting only the parameter set that best fits the data; (3) looking for improved combining rules, since existing rules were found to under-predict the viscosity in most cases; (4

  2. Elements of fractal generalization of dual-porosity model for solute transport in unsaturated fractured rocks

    SciTech Connect

    Bolshov, L.; Kondratenko, P.; Matveev, L.; Pruess, K.

    2008-09-01

    In this study, new elements were developed to generalize the dual-porosity model for moisture infiltration on and solute transport in unsaturated rocks, taking into account fractal aspects of the percolation process. Random advection was considered as a basic mechanism of solute transport in self-similar fracture systems. In addition to spatial variations in the infiltration velocity field, temporal fluctuations were also taken into account. The rock matrix, a low-permeability component of the heterogeneous geologic medium, acts as a trap for solute particles and moisture. Scaling relations were derived for the moisture infiltration flux, the velocity correlation length, the average velocity of infiltration, and the velocity correlation function. The effect of temporal variations in precipitation intensity on the infiltration processes was analyzed. It showed that the mode of solute transport is determined by the power exponent in the advection velocity correlation function and the dimensionality of the trapping system, both of which may change with time. Therefore, depending on time, various transport regimes may be realized: superdiffusion, subdiffusion, or classical diffusion. The complex structure of breakthrough curves from changes in the transport regimes was also examined. A renormalization of the solute source strength due to characteristic fluctuations of highly disordered media was established.

  3. Computational modeling of 137Cs contaminant transfer associated with sediment transport in Abukuma River.

    PubMed

    Iwasaki, T; Nabi, M; Shimizu, Y; Kimura, I

    2015-01-01

    A numerical model capable of simulating the transfer of (137)Cs in rivers associated with transport of fine sediment is presented. The accident at Fukushima Dai-ichi Nuclear Power Plant (FDNPP) released radionuclides into the atmosphere, and after fallout several radionuclides in them, such as radiocesium ((134)Cs, (137)Cs) and radioiodine ((131)I) were adsorbed on surface soil particles around FDNPP and transported by surface water. To understand the transport and deposition of the radioactive contaminant along with surface soil particles and its flux to the ocean, we modeled the transport of the (137)Cs contaminant by computing the water flow and the associated washload and suspended load transport. We have developed a two-dimensional model to simulate the plane flow structure, sediment transport and associated (137)Cs contaminant transport in rivers by combining a shallow water flow model and an advection-diffusion equation for the transport of sediment. The proposed model has been applied to the lower reach of Abukuma River, which is the main river in the highly contaminated area around FDNPP. The numerical results indicate that most (137)Cs supplied from the upstream river reach with washload would directly reach to Pacific Ocean. In contrast, washload-oriented (137)Cs supplied from the upstream river basin has a limited role in the radioactive contamination in the river. The results also suggest that the proposed framework of computational model can be a potential tool for understanding the sediment-oriented (137)Cs behavior in rivers.

  4. Process-based modeling of tsunami inundation and sediment transport

    USGS Publications Warehouse

    Apotsos, A.; Gelfenbaum, G.; Jaffe, B.

    2011-01-01

    The infrequent and unpredictable nature of tsunamis precludes the use of field experiments to measure the hydrodynamic and sediment transport processes that occur. Instead, these processes are often approximated from laboratory, numerical, and theoretical studies or inferred from observations of the resultant sediment deposits. Here Delft3D, a three-dimensional numerical model, is used to simulate the inundation and sediment transport of a tsunami similar in magnitude to the 26 December 2004 Indian Ocean tsunami over one measured and three idealized morphologies. The model is first shown to match well the observations taken at Kuala Meurisi, Sumatra, and then used to examine in detail the processes that occur during the tsunami. The model predicts that at a given cross-shore location the onshore flow accelerates rapidly to a maximum as the wavefront passes, and then gradually decelerates before reversing direction and flowing offshore. The onshore flow does not tend to zero everywhere at maximum inundation, but instead flow reversal occurs near the shoreline even as the wavefront continues to inundate landward. While some sediment is eroded by the passing wavefront, the suspension of sandy sediment is dominated by the long-duration, high-velocity backwash that occurs along the beach face and offshore of the shoreline. Some of the sediment suspended during backwash is advected shoreward by the subsequent wave, creating large spatial gradients in the suspended sediment concentrations, which may not be in equilibrium with the local hydrodynamics. The inundation and transport of sediment during a tsunami can be affected by complexities in the morphological profile and interactions between multiple waves, and many of the hydrodynamic and sediment transport processes predicted here are similar to analogous processes previously observed in the swash zone. Copyright 2011 by the American Geophysical Union.

  5. Calculation of a residual mean meridional circulation for a zonal-mean tracer transport model

    SciTech Connect

    Choi, W.K.; Rotman, D.A.; Wuebbles, D.J.

    1995-04-01

    Because of their computational advantages, zonally-averaged chemical-radiative-transport models are widely used to investigate the distribution of chemical species and their change due to the anthropogenic chemicals in the lower and middle atmosphere. In general, the Lagrangian-mean formulation would be ideal to treat transport due to the zonal mean circulation and eddies. However, the Lagrangian formulation is difficult to use in practical applications. The most widely-used formulation for treating global atmospheric dynamics in two-dimensional models is the transformed Eulerian mean (TEM) equations. The residual mean meridional circulation (RMMC) in the TEM system is used to advect tracers. In this study, the authors describe possible solution techniques for obtaining the RMMC in the LLNL two-dimensional chemical-radiative-transport model. In the first section, the formulation will be described. In sections 3 and 4, possible solution procedures will be described for a diagnostic and prognostic case, respectively.

  6. Modeling the effects of wave skewness and beach cusps on littoral sand transport

    USGS Publications Warehouse

    Haas, K.A.; Check, L.A.; Hanes, D.M.

    2008-01-01

    A process-based numerical modeling system is utilized for predicting littoral sand transport. The intent is to examine conditions slightly more complex than linear waves impinging upon a plane beach. Two factors that we examine are wave skewness and longshore varying bathymetry. An empirical model is used for calculating the skewed bottom wave orbital velocity. The advection of sediment due to the skewed wave velocity is larger and in the direction of the waves, opposite to the results with sinusoidal wave velocities, due to the increase in the bottom shear stress under the wave crests. The model system is also applied to bathymetry containing beach cusps. When the wave field has relatively weak longshore wave power, the currents and the littoral transport exhibit significant longshore variability, thereby altering the overall mean littoral transport.

  7. Pore scale modeling of reactive transport involved in geologic CO2 sequestration

    SciTech Connect

    Kang, Qinjin; Lichtner, Peter C; Viswanathan, Hari S; Abdel-fattah, Amr I

    2009-01-01

    We apply a multi-component reactive transport lattice Boltzmann model developed in previolls studies to modeling the injection of a C02 saturated brine into various porous media structures at temperature T=25 and 80 C. The porous media are originally consisted of calcite. A chemical system consisting of Na+, Ca2+, Mg2+, H+, CO2(aq), and CI-is considered. The fluid flow, advection and diHusion of aqueous species, homogeneous reactions occurring in the bulk fluid, as weB as the dissolution of calcite and precipitation of dolomite are simulated at the pore scale. The effects of porous media structure on reactive transport are investigated. The results are compared with continuum scale modeling and the agreement and discrepancy are discussed. This work may shed some light on the fundamental physics occurring at the pore scale for reactive transport involved in geologic C02 sequestration.

  8. Modeling Mercury Fate and Transport in Aquatic Systems

    NASA Astrophysics Data System (ADS)

    Massoudieh, Arash; Žagar, Dušan; Green, Peter G.; Cabrera-Toledo, Carlos; Horvat, Milena; Ginn, Timothy R.; Barkouki, Tammer; Weathers, Tess; Bombardelli, Fabian A.

    Mercury in the aquatic environment is a neurotoxin with several known adverse effects on the natural ecosystem and the human health. Mathematical modeling is a cost-effective way for assessing the risk associated with mercury to aquatic organisms and for developing management plans for the reduction of mercury exposure in such systems. However, the analysis of mercury fate and transport in the aquatic environment requires multiple disciplines of science ranging from sediment transport and hydraulics, to geochemistry and microbiology. Also, it involves the knowledge of some less understood processes such as the microbial and diagenetic processes affecting the chemical speciation of mercury and various mechanisms involved in the mass-exchange of mercury species between the benthic sediments and the overlying water. Due to these complexities, there are many challenges involved in developing an integrated mercury fate and transport model in aquatic systems. This paper identifies the various processes that are potentially important in mercury fate and transport as well as the knowns and unknowns about these processes. Also, an integrated multi-component reactive transport modeling approach is suggested to capture several of those processes. This integrated modeling framework includes the coupled advective-dispersive transport of mercury species in the water body, both in dissolved phase and as associated to mobile suspended sediments. The flux of mercury in the benthic sediments as a result of diffusive mass exchange, bio-dispersion, and hyporheic flow, and the flow generated due to consolidation of newly deposited sediments is also addressed. The model considers in addition the deposition and resuspension of sediments and their effect on the mass exchange of mercury species between the top water and the benthic sediments. As for the biogeochemical processes, the effect of redox stratification and activities of sulfate and iron-reducing bacteria on the methylation of

  9. An advection scheme based on the combination of particle mesh method and pure Lagrangian approach

    NASA Astrophysics Data System (ADS)

    Arsenic, Ilija; Mihailovic, Dragutin T.; Kapor, Darko

    2011-11-01

    Possibility of using pure Lagrangian approach in modeling transport phenomena is described in this paper. The application of pure Lagrangian approach in real atmospheric field induces highly irregular spatial distribution of grid points, after only a few time steps. In order to avoid problems caused by that irregularity, a quasi interpolation procedure is proposed. Proposed interpolation procedure is similar to the radial basis functions interpolation and does not impose any demands about spatial distribution of the grid points or about continuity and differentiability of the field that needs to be interpolated. Besides that, proposed procedure is explicitly mass conserving. Combination of particle mesh method and pure Lagrangian approach creates efficient transport scheme that does not produce any new local maxima and minima in advected field. In proposed advection scheme motion of points are performed in Lagrangian manner while spatial derivatives are evaluated on the basis of values interpolated onto regular grid. Applicability of proposed advection scheme in an unambiguous way is proved by performing "standard" numerical tests with (i) the slotted cylinder under solid body rotation, (ii) the test with Doswell's idealized cyclogenesis as well as (iii) integration of shallow water equations.

  10. Model prediction uncertainty of bromide and pesticides transport in laboratory column

    NASA Astrophysics Data System (ADS)

    Dusek, Jaromir; Dohnal, Michal; Snehota, Michal; Sobotkova, Martina; Ray, Chittaranjan; Vogel, Tomas

    2016-04-01

    Knowledge of transport parameters of reactive solutes such as pesticides is a prerequisite for reliable predictions of their fate and transport in soil porous systems. Water flow and transport of bromide tracer and five pesticides (atrazine, imazaquin, sulfometuron methyl, S-metolachlor, and imidacloprid) through an undisturbed soil column of tropical Oxisol were analyzed using a one-dimensional numerical model. Laboratory column leaching experiment with three flow interruptions was conducted. The applied numerical model is based on Richards' equation for solving water flow and the advection-dispersion equation for solving solute transport. A global optimization method was used to evaluate the model's sensitivity to transport parameters and the uncertainty of model predictions. Within the Monte Carlo modeling framework, multiple forward simulations searching through the parametric space, were executed to describe the observed breakthrough curves. All pesticides were found to be relatively mobile. Experimental data indicated significant non-conservative behavior of bromide tracer. All pesticides, with the exception of imidacloprid, were found less persistent. Three of the five pesticides (atrazine, sulfometuron methyl, and S-metolachlor) were better described by the linear kinetic sorption model, while the breakthrough curves of imazaquin and imidacloprid were more appropriately approximated using nonlinear instantaneous sorption. Sensitivity analysis suggested that the model is most sensitive to sorption distribution coefficient. The prediction limits contained most of the measured points of the experimental breakthrough curves, indicating adequate model concept and model structure for the description of transport processes in the soil column under study.

  11. Hydraulic and solute-transport properties and simulated advective transport of contaminated ground water in a fractured rock aquifer at the Naval Air Warfare Center, West Trenton, New Jersey, 2003

    USGS Publications Warehouse

    Lewis-Brown, Jean C.; Carleton, Glen B.; Imbrigiotta, Thomas E.

    2006-01-01

    Volatile organic compounds, predominantly trichloroethylene and its degradation products, have been detected in ground water at the Naval Air Warfare Center (NAWC), West Trenton, New Jersey. An air-stripping pump-and-treat system has been in operation at the NAWC since 1998. An existing ground-water-flow model was used to evaluate the effect of a change in the configuration of the network of recovery wells in the pump-and-treat system on flow paths of contaminated ground water. The NAWC is underlain by a fractured-rock aquifer composed of dipping layers of sedimentary rocks of the Lockatong and Stockton Formations. Hydraulic and solute-transport properties of the part of the aquifer composed of the Lockatong Formation were measured using aquifer tests and tracer tests. The heterogeneity of the rocks causes a wide range of values of each parameter measured. Transmissivity ranges from 95 to 1,300 feet squared per day; the storage coefficient ranges from 9 x 10-5 to 5 x 10-3; and the effective porosity ranges from 0.0003 to 0.002. The average linear velocity of contaminated ground water was determined for ambient conditions (when no wells at the site are pumped) using an existing ground-water-flow model, particle-tracking techniques, and the porosity values determined in this study. The average linear velocity of flow paths beginning at each contaminated well and ending at the streams where the flow paths terminate ranges from 0.08 to 130 feet per day. As a result of a change in the pump-and-treat system (adding a 165-foot-deep well pumped at 5 gallons per minute and reducing the pumping rate at a nearby 41-foot-deep well by the same amount), water in the vicinity of three 100- to 165-foot-deep wells flows to the deep well rather than the shallower well.

  12. Modeling energy transport in nanostructures

    NASA Astrophysics Data System (ADS)

    Pattamatta, Arvind

    Heat transfer in nanostructures differ significantly from that in the bulk materials since the characteristic length scales associated with heat carriers, i.e., the mean free path and the wavelength, are comparable to the characteristic length of the nanostructures. Nanostructure materials hold the promise of novel phenomena, properties, and functions in the areas of thermal management and energy conversion. Example of thermal management in micro/nano electronic devices is the use of efficient nanostructured materials to alleviate 'hot spots' in integrated circuits. Examples in the manipulation of heat flow and energy conversion include nanostructures for thermoelectric energy conversion, thermophotovoltaic power generation, and data storage. One of the major challenges in Metal-Oxide Field Effect Transistor (MOSFET) devices is to study the 'hot spot' generation by accurately modeling the carrier-optical phonon-acoustic phonon interactions. Prediction of hotspot temperature and position in MOSFET devices is necessary for improving thermal design and reliability of micro/nano electronic devices. Thermoelectric properties are among the properties that may drastically change at nanoscale. The efficiency of thermoelectric energy conversion in a material is measured by a non-dimensional figure of merit (ZT) defined as, ZT = sigmaS2T/k where sigma is the electrical conductivity, S is the Seebeck coefficient, T is the temperature, and k is the thermal conductivity. During the last decade, advances have been made in increasing ZT using nanostructures. Three important topics are studied with respect to energy transport in nanostructure materials for micro/nano electronic and thermoelectric applications; (1) the role of nanocomposites in improving the thermal efficiency of thermoelectric devices, (2) the interfacial thermal resistance for the semiconductor/metal contacts in thermoelectric devices and for metallic interconnects in micro/nano electronic devices, (3) the

  13. A multimedia fate and chemical transport modeling system for pesticides: I. Model development and implementation

    NASA Astrophysics Data System (ADS)

    Li, Rong; Scholtz, M. Trevor; Yang, Fuquan; Sloan, James J.

    2011-07-01

    We have combined the US EPA MM5/MCIP/SMOKE/CMAQ modeling system with a dynamic soil model, the pesticide emission model (PEM), to create a multimedia chemical transport model capable of describing the important physical and chemical processes involving pesticides in the soil, in the atmosphere, and on the surface of vegetation. These processes include: agricultural practices (e.g. soil tilling and pesticide application mode); advection and diffusion of pesticides, moisture, and heat in the soil; partitioning of pesticides between soil organic carbon and interstitial water and air; emissions from the soil to the atmosphere; gas-particle partitioning and transport in the atmosphere; and atmospheric chemistry and dry and wet deposition of pesticides to terrestrial and water surfaces. The modeling system was tested by simulating toxaphene in a domain that covers most of North America for the period from 1 January 2000 to 31 December 2000. The results show obvious transport of the pesticide from the heavily contaminated soils in the southern United States and Mexico to water bodies including the Atlantic Ocean, the Gulf of Mexico and the Great Lakes, leading to significant dry and wet deposition into these ecosystems. The spatial distributions of dry and wet depositions differ because of their different physical mechanisms; the former follows the distribution of air concentrations whereas the latter is more biased to the North East due to the effect of precipitation.

  14. Bayesian methods for model choice and propagation of model uncertainty in groundwater transport modeling

    NASA Astrophysics Data System (ADS)

    Mendes, B. S.; Draper, D.

    2008-12-01

    The issue of model uncertainty and model choice is central in any groundwater modeling effort [Neuman and Wierenga, 2003]; among the several approaches to the problem we favour using Bayesian statistics because it is a method that integrates in a natural way uncertainties (arising from any source) and experimental data. In this work, we experiment with several Bayesian approaches to model choice, focusing primarily on demonstrating the usefulness of the Reversible Jump Markov Chain Monte Carlo (RJMCMC) simulation method [Green, 1995]; this is an extension of the now- common MCMC methods. Standard MCMC techniques approximate posterior distributions for quantities of interest, often by creating a random walk in parameter space; RJMCMC allows the random walk to take place between parameter spaces with different dimensionalities. This fact allows us to explore state spaces that are associated with different deterministic models for experimental data. Our work is exploratory in nature; we restrict our study to comparing two simple transport models applied to a data set gathered to estimate the breakthrough curve for a tracer compound in groundwater. One model has a mean surface based on a simple advection dispersion differential equation; the second model's mean surface is also governed by a differential equation but in two dimensions. We focus on artificial data sets (in which truth is known) to see if model identification is done correctly, but we also address the issues of over and under-paramerization, and we compare RJMCMC's performance with other traditional methods for model selection and propagation of model uncertainty, including Bayesian model averaging, BIC and DIC.References Neuman and Wierenga (2003). A Comprehensive Strategy of Hydrogeologic Modeling and Uncertainty Analysis for Nuclear Facilities and Sites. NUREG/CR-6805, Division of Systems Analysis and Regulatory Effectiveness Office of Nuclear Regulatory Research, U. S. Nuclear Regulatory Commission

  15. Model transport directional solidification apparatus

    SciTech Connect

    Mason, J.T.; Eshelman, M.A.

    1986-07-01

    A model transport directional solidification apparatus is described. It has three functional components, each of which are described: the temperature gradient stage, the motor and drive mechanism, and the measuring systems. A small amount of sample is held between two glass slides on the temperature gradient stage so that the portion of sample in the hot chamber is molten and the portion in the cold chamber is solidified. Conditions are set so that the solid-liquid interface occurs in the gap between the chambers and can be observed through the microscope system. In-situ directional solidification is observed by driving the sample from the hot chamber to the cold chamber and observing the solidification process as it occurs. (LEW)

  16. Modeling Transport Through Synthetic Nanopores

    PubMed Central

    Aksimentiev, Aleksei; Brunner, Robert K.; Cruz-Chú, Eduardo; Comer, Jeffrey; Schulten, Klaus

    2011-01-01

    Nanopores in thin synthetic membranes have emerged as convenient tools for high-throughput single-molecule manipulation and analysis. Because of their small sizes and their ability to selectively transport solutes through otherwise impermeable membranes, nanopores have numerous potential applications in nanobiotechnology. For most applications, properties of the nanopore systems have to be characterize at the atomic level, which is currently beyond the limit of experimental methods. Molecular dynamics (MD) simulations can provide the desired information, however several technical challenges have to be met before this method can be applied to synthetic nanopore systems. Here, we highlight our recent work on modeling synthetic nanopores of the most common types. First, we describe a novel graphical tool for setting up all-atom systems incorporating inorganic materials and biomolecules. Next, we illustrate the application of the MD method for silica, silicon nitride, and polyethylene terephthalate nanopores. Following that, we describe a method for modeling synthetic surfaces using a bias potential. Future directions for tool development and nanopore modeling are briefly discussed at the end of this article. PMID:21909347

  17. A generic model for transport in turbulent shear flows

    SciTech Connect

    Newton, Andrew P. L.; Kim, Eun-Jin

    2011-05-15

    Turbulence regulation by large-scale shear flows is crucial for a predictive modeling of transport in plasma. In this paper the suppression of turbulent transport by large-scale flows is studied numerically by measuring the turbulent diffusion D{sub t} and scalar amplitude of decaying passive scalar fields n{sup '} advected by various turbulent flows. Both uniform flows and shear flows are shown to suppress turbulence causing the quenching in transport and turbulence amplitude. The uniform flows U{sub 0}={Lambda}y with the advection rate {Lambda} in the case of a finite correlated forcing with {tau}{sub F}=1 gives rise to the advection/sweeping effect which suppresses D{sub t}, and as {proportional_to}{Lambda}{sup -2} for {Lambda}>>{tau}{sub F}{sup -1}. In contrast, no influence of the uniform flow is found in the case of a short correlated forcing {tau}{sub F}{yields}0 due to Galilean invariance. For the shear flow U{sub 0}={Omega}sinxy ({Omega}= constant shearing rate) with the appropriate choice of the forcing ({tau}{sub F}{yields}0) the nature of transport suppression is shown to crucially depend on the properties of the turbulence. Specifically, for prescribed turbulence with a short correlation time {tau}{sub c}={tau}{sub F}<<{Omega}{sup -1}, the turbulence statistics scale as D{sub t{proportional_to}{Omega}}{sup -0.02}, {proportional_to}{Omega}{sup -0.62} and cross-phase cos{theta}{proportional_to}{Omega}{sup 0.29}. For consistently evolved turbulence with a finite correlation time {tau}{sub c{>=}{Omega}}{sup -1}, turbulence statistics are suppressed more strongly as D{sub t{proportional_to}{Omega}}{sup -1.75}, {proportional_to}{Omega}{sup -2.41}, {proportional_to}{Omega}{sup -0.65} and <{omega}{sup '2}>{proportional_to}{Omega}{sup -0.50}. A novel renormalization scheme is then introduced to rescale our results into the regime within which the kinetic energy and enstrophy are unchanged by

  18. Investigation of VOC Transport in Soil Vapors due to Wind Effects using Models and Measurement

    NASA Astrophysics Data System (ADS)

    Pennell, K. G.; Roghani, M.; Shirazi, E.; Willett, E.

    2014-12-01

    For the past several years, vapor intrusion of volatile organic compounds (VOCs) that emanate from hazardous waste sites has been gaining attention due to adverse health effects and regulatory action. Most studies of VOC vapor intrusion suggest that diffusion is the dominant contaminant transport mechanism, while advection is only considered important near contaminant entry points (i.e. building cracks). This conceptual framework is accurate when above-ground surface features do not promote air flow into (or out of) the ground surface. Recent research related to air flow in the atmospheric boundary layer (ABL) due to wind effects around buildings suggests a need for better understanding how advective transport processes can impact contaminant profiles and vapor intrusion exposure risks. In this study, a numerical model using COMSOL Multiphysics was developed to account for parameters affecting the transport of VOCs from the subsurface into buildings by considering wind effects in the ABL. Model simulations are compared to preliminary laboratory and field data to evaluate the relative importance of wind induced pressure gradients, soil permeability, soil porosity, and soil effective diffusivity on vapor intrusion entry rates. The major goal of this research is to develop an improved conceptual understanding of the vapor intrusion process so that remediation efforts can be better designed and implemented.

  19. Modeling Fate and Transport of Rotavirus in Surface Flow by Integrating WEPP and a Pathogen Transport Model

    NASA Astrophysics Data System (ADS)

    Bhattarai, R.; Kalita, P. K.; Davidson, P. C.; Kuhlenschmidt, M. S.

    2012-12-01

    More than 3.5 million people die each year from a water related diseases in this world. Every 20 seconds, a child dies from a water-related illness. Even in a developed country like the United States, there have been at least 1870 outbreaks associated with drinking water during the period of 1920 to 2002, causing 883,806 illnesses. Most of these outbreaks are resulted due to the presence of microbial pathogens in drinking water. Rotavirus infection has been recognized as the most common cause of diarrhea in young children throughout the world. Laboratory experiments conducted at the University of Illinois have demonstrated that recovery of rotavirus has been significantly affected by climatic and soil-surface conditions like slope, soil types, and ground cover. The objective of this study is to simulate the fate and transport of Rotavirus in overland and near-surface flow using a process-based model. In order to capture the dynamics of sediment-bound pathogens, the Water Erosion Prediction Project (WEPP) is coupled with the pathogen transport model. Transport of pathogens in overland flow can be simulated mathematically by including terms for the concentration of the pathogens in the liquid phase (in suspension or free-floating) and the solid phase (adsorbed to the fine solid particles like clay and silt). Advection, adsorption, and decay processes are considered. The mass balance equations are solved using numerical technique to predict spatial and temporal changes in pathogen concentrations in two phases. Outputs from WEPP simulations (flow velocity, depth, saturated conductivity and the soil particle fraction exiting in flow) are transferred as input for the pathogen transport model. Three soil types and three different surface cover conditions have been used in the experimental investigations. Results from these conditions have been used in calibrating and validating the simulation results. Bare surface conditions have produced very good agreement between

  20. Comparison of a Coupled Ocean-Atmosphere Model with and without Oceanic Eddy-Induced Advection. Part I: Ocean Spinup and Control Integrations.

    NASA Astrophysics Data System (ADS)

    Hirst, Anthony C.; O'Farrell, Siobhan P.; Gordon, Hal B.

    2000-01-01

    The Gent and McWilliams (GM) parameterization for large-scale water transport caused by mesoscale oceanic eddies is introduced into the oceanic component of the Commonwealth Scientific and Industrial Research Organisation global coupled ocean-atmosphere model. Parallel simulations with and without the GM scheme are performed to examine the effect of this parameterization on the model behavior for integrations lasting several centuries under conditions of constant atmospheric CO2. The solution of the version with GM shows several significant improvements over that of the earlier version. First, the generally beneficial effects of the GM scheme found previously in studies of stand-alone ocean models, including more realistic deep water properties, increased stratification, reduced high-latitude convection, elimination of fictitious horizontal diffusive heat transport, and more realistic surface fluxes in some regions, are all maintained during the coupled integration. These improvements are especially pronounced in the high-latitude Southern Ocean. Second, the magnitude of flux adjustment is reduced in the GM version, mainly because of smaller surface fluxes at high southern latitudes in the GM ocean spinup. Third, the GM version displays markedly reduced climate drift in comparison to the earlier version. Analysis in the present study verifies previous indications that changes in the pattern of convective heat flux are central to the drift in the earlier version, supporting the view that reduced convective behavior in the GM version contributes to the reduction in drift. Based on the satisfactory behavior of the GM model version, the GM coupled integration is continued for a full 1000 yr. Key aspects of the model behavior during this longer period are also presented. Interannual variability of surface air temperature in the two model versions is briefly examined using some simple measures of magnitude. The variability differs between the two versions regionally, but

  1. Anomalous solute transport in saturated porous media: Relating transport model parameters to electrical and nuclear magnetic resonance properties

    NASA Astrophysics Data System (ADS)

    Swanson, Ryan D.; Binley, Andrew; Keating, Kristina; France, Samantha; Osterman, Gordon; Day-Lewis, Frederick D.; Singha, Kamini

    2015-02-01

    The advection-dispersion equation (ADE) fails to describe commonly observed non-Fickian solute transport in saturated porous media, necessitating the use of other models such as the dual-domain mass-transfer (DDMT) model. DDMT model parameters are commonly calibrated via curve fitting, providing little insight into the relation between effective parameters and physical properties of the medium. There is a clear need for material characterization techniques that can provide insight into the geometry and connectedness of pore spaces related to transport model parameters. Here, we consider proton nuclear magnetic resonance (NMR), direct-current (DC) resistivity, and complex conductivity (CC) measurements for this purpose, and assess these methods using glass beads as a control and two different samples of the zeolite clinoptilolite, a material that demonstrates non-Fickian transport due to intragranular porosity. We estimate DDMT parameters via calibration of a transport model to column-scale solute tracer tests, and compare NMR, DC resistivity, CC results, which reveal that grain size alone does not control transport properties and measured geophysical parameters; rather, volume and arrangement of the pore space play important roles. NMR cannot provide estimates of more-mobile and less-mobile pore volumes in the absence of tracer tests because these estimates depend critically on the selection of a material-dependent and flow-dependent cutoff time. Increased electrical connectedness from DC resistivity measurements are associated with greater mobile pore space determined from transport model calibration. CC was hypothesized to be related to length scales of mass transfer, but the CC response is unrelated to DDMT.

  2. RADIONUCLIDE TRANSPORT MODELS UNDER AMBIENT CONDITIONS

    SciTech Connect

    S. Magnuson

    2004-11-01

    The purpose of this model report is to document the unsaturated zone (UZ) radionuclide transport model, which evaluates, by means of three-dimensional numerical models, the transport of radioactive solutes and colloids in the UZ, under ambient conditions, from the repository horizon to the water table at Yucca Mountain, Nevada.

  3. Chaotic Advection in a Bounded 3-Dimensional Potential Flow

    NASA Astrophysics Data System (ADS)

    Metcalfe, Guy; Smith, Lachlan; Lester, Daniel

    2012-11-01

    3-dimensional potential, or Darcy flows, are central to understanding and designing laminar transport in porous media; however, chaotic advection in 3-dimensional, volume-preserving flows is still not well understood. We show results of advecting passive scalars in a transient 3-dimensional potential flow that consists of a steady dipole flow and periodic reorientation. Even for the most symmetric reorientation protocol, neither of the two invarients of the motion are conserved; however, one invarient is closely shadowed by a surface of revolution constructed from particle paths of the steady flow, creating in practice an adiabatic surface. A consequence is that chaotic regions cover 3-dimensional space, though tubular regular regions are still transport barriers. This appears to be a new mechanism generating 3-dimensional chaotic orbits. These results contast with the experimental and theoretical results for chaotic scalar transport in 2-dimensional Darcy flows. Wiggins, J. Fluid Mech. 654 (2010).

  4. Examination of the evolution of radiation and advection fogs. Final report

    SciTech Connect

    Orgill, M.M.

    1993-01-01

    A literature study was done on radiation and advection fog evolution. For radiation fog, six stages of fog evolution have been identified -- (1) precursor, (2) sunset, (3) conditioning, (4) mature, (5) sunrise, and (6) dissipation. The evolution of advection fog models has been in parallel with radiation fog models, but no identified stages in the evolution of advection fog have been proposed: (1) precursor, (2) initiation, (3) mature, and (4) dissipation. Radiation and advection fog models will require greater sophistication in order to study fog spatial and temporal variability. Physical aspects that require further study are discussed.

  5. Representations of transport, convection, and the hydrologic cycle in chemical transport models: Implications for the modeling of short-lived and soluble species

    NASA Astrophysics Data System (ADS)

    Rasch, P. J.; Mahowald, N. M.; Eaton, B. E.

    1997-12-01

    We compare chemical transport simulations performed in a model using archived meteorological data (an off-line transport model) to those performed in a model in which the meteorological data are predicted every time step (an on-line model). We identify the errors associated with using data sampled at timescales much longer than those operating in the atmosphere or in the on-line model, and strategies for ameleorating those errors. The evaluation is performed in the context of a global off-line chemical transport model called the Model of Atmospheric Transport and Chemistry (MATCH) for three test problems: (1) the passive advection of blobs initially concentrated in the lower and upper troposphere; (2) the surface emission of radon and its decay to lead; and (3) the removal of lead from the atmosphere by wet and dry deposition processes. These problems exercise the important processes of transport by resolved scale winds, rapid transport by smaller scale convection processes, and wet removal (which depends on the representation of the hydrologic cycle). We show that the errors in off-line model simulations (compared to the on-line simulations) can be made small when the sampling interval is order 6 hours or less. We also show that one can accurately reproduce the subgrid-scale processes within the off-line model, rather than needing to archive the results of those processes as input to the off-line model. This suggests that for the spatial and temporal scales treated in global models it is possible to treat many problems nearly as accurately in an off-line mode as one can with an on-line treatment.

  6. Automated calibration of a stream solute transport model: Implications for interpretation of biogeochemical parameters

    USGS Publications Warehouse

    Scott, D.T.; Gooseff, M.N.; Bencala, K.E.; Runkel, R.L.

    2003-01-01

    The hydrologic processes of advection, dispersion, and transient storage are the primary physical mechanisms affecting solute transport in streams. The estimation of parameters for a conservative solute transport model is an essential step to characterize transient storage and other physical features that cannot be directly measured, and often is a preliminary step in the study of reactive solutes. Our study used inverse modeling to estimate parameters of the transient storage model OTIS (One dimensional Transport with Inflow and Storage). Observations from a tracer injection experiment performed on Uvas Creek, California, USA, are used to illustrate the application of automated solute transport model calibration to conservative and nonconservative stream solute transport. A computer code for universal inverse modeling (UCODE) is used for the calibrations. Results of this procedure are compared with a previous study that used a trial-and-error parameter estimation approach. The results demonstrated 1) importance of the proper estimation of discharge and lateral inflow within the stream system; 2) that although the fit of the observations is not much better when transient storage is invoked, a more randomly distributed set of residuals resulted (suggesting non-systematic error), indicating that transient storage is occurring; 3) that inclusion of transient storage for a reactive solute (Sr2+) provided a better fit to the observations, highlighting the importance of robust model parameterization; and 4) that applying an automated calibration inverse modeling estimation approach resulted in a comprehensive understanding of the model results and the limitation of input data.

  7. Comparison between Eulerian and Lagrangian Atmospheric Transport Models

    NASA Astrophysics Data System (ADS)

    Heinrich, P.; Grillon, Y.

    2001-05-01

    Two numerical atmospheric models are tested and compared both in backward and forward modes to study the transport and dispersion of radioactive gases in the framework of the Comprehensive Test Ban Treaty. The first one (LMDZ) has been developed at the Laboratoire de Meteorologie Dynamique in Paris,it calculates eulerian large-scale advection based upon finite-volume methods and parametrization of turbulent mixing and convection. The second one (HYSPLIT), developed by the Air Resources Laboratory of NOAA, is lagrangian and calculated 3D trajectories of particules, taking also into account dispersion due to wind shear. Concentrations of particules are compared at stations of the CTBT network for a fictitious source in the Pacific Ocean, that is assumed to be punctual in time and space. In the backward mode, concentrations are calculated and compared over 15 days from a point source at Tahiti to determine the field of regard for this station. Sensitivity tests are carried out by varying the spatial resolution of models.

  8. FEMA: a Finite Element Model of Material Transport through Aquifers

    SciTech Connect

    Yeh, G.T.; Huff, D.D.

    1985-01-01

    This report documents the construction, verification, and demonstration of a Finite Element Model of Material Transport through Aquifers (FEMA). The particular features of FEMA are its versatility and flexibility to deal with as many real-world problems as possible. Mechanisms included in FEMA are: carrier fluid advection, hydrodynamic dispersion and molecular diffusion, radioactive decay, sorption, source/sinks, and degradation due to biological, chemical as well as physical processes. Three optional sorption models are embodied in FEMA. These are linear isotherm and Freundlich and Langmuir nonlinear isotherms. Point as well as distributed source/sinks are included to represent artificial injection/withdrawals and natural infiltration of precipitation. All source/sinks can be transient or steady state. Prescribed concentration on the Dirichlet boundary, given gradient on the Neumann boundary segment, and flux at each Cauchy boundary segment can vary independently of each other. The aquifer may consist of as many formations as desired. Either completely confined or completely unconfined or partially confined and partially unconfined aquifers can be dealt with effectively. FEMA also includes transient leakage to or from the aquifer of interest through confining beds from or to aquifers lying below and/or above.

  9. AN EULERIAN-LAGRANGIAN LOCALIZED ADJOINT METHOD FOR THE ADVECTION-DIFFUSION EQUATION

    EPA Science Inventory

    Many numerical methods use characteristic analysis to accommodate the advective component of transport. Such characteristic methods include Eulerian-Lagrangian methods (ELM), modified method of characteristics (MMOC), and operator splitting methods. A generalization of characteri...

  10. Morphological changes due to tsunami impact: Numerical modelling of sediments transport and deposit at Tangier - Morocco

    NASA Astrophysics Data System (ADS)

    Ramalho, Inês; Omira, Rachid; Baptista, Maria Ana; El Moussaoui, Said; Najib Zaghloul, Mohamed

    2016-04-01

    Coastal areas in the North of Morocco are at risk of tsunami inundation. Overland tsunami propagation leads to widespread and dramatic changes in coastal morphology due to sediments erosion, transport and deposition processes. Tsunami sediments transport and morphological changes must take into consideration bed-load and suspended load transport of non-cohesive sediments and suspended load of cohesive sediments. Numerical calculation of suspended sediment transport/deposition is performed by solving the advection-diffusion equations for the suspended sediment, where the velocities are obtained from the hydrodynamic modelling. In this study, we assess the morphological changes under tsunami impact at the Bay of Tangier-Morocco. We use a coupled hydrodynamic and morpho-dynamic numerical code, based on two open sources codes: COMCOT and Xbeach, to simulate the tsunami impact and the associated sediments transport and deposition. COMCOT solves the shallow water equations to calculate the inundation characteristics (flow depth and velocity), while Xbeach allows solving the advection-diffusion equations to determine the amount of sediments eroded, transported and deposed. The results of this study are presented in terms of maps displaying the amount of sediments eroded, transported and deposed at the bay of Tangier following a tsunami similar to the 1755 Lisbon event. We find that the bay of Tangier is vulnerable to morphological changes under tsunami threat coming from SW Iberia margin. This work is supported by the EU project ASTARTE - Assessment, Strategy And Risk Reduction for Tsunamis in Europe, Grant 603839, 7th FP (ENV.2013,6.4-3).

  11. Modeling underwater transport of oil spilled from deepwater area in the South China Sea

    NASA Astrophysics Data System (ADS)

    Chen, Haibo; An, Wei; You, Yunxiang; Lei, Fanghui; Zhao, Yupeng; Li, Jianwei

    2016-01-01

    Based on a Lagrangian integral technique and Lagrangian particle-tracking technique, a numerical model was developed to simulate the underwater transport of oil from a deepwater spill. This model comprises two submodels: a plume dynamics model and an advection-diffusion model. The former is used to simulate the stages dominated by the initial jet momentum and plume buoyancy of the spilled oil, while the latter is used to simulate the stage dominated by the ambient current and turbulence. The model validity was verified through comparisons of the model predictions with experimental data from several laboratory flume experiments and a field experiment. To demonstrate the capability of the model further, it was applied to the simulation of a hypothetical oil spill occurring at the seabed of a deepwater oil/gas field in the South China Sea. The results of the simulation would be useful for contingency planning with regard to the emergency response to an underwater oil spill.

  12. Modeling in-situ transport of uranine and colloids in the fracture network in KURT.

    PubMed

    Kim, Jung-Woo; Lee, Jae-Kwang; Baik, Min-Hoon; Jeong, Jongtae

    2015-02-01

    An in-situ dipole migration experiment was conducted using the conservative tracer uranine and latex colloids in KAERI (Korea Atomic Energy Research Institute) Underground Research Tunnel (KURT). The location and dimensions of the fractures between the two boreholes were estimated using the results of a borehole image processing system (BIPS) investigation, and the connectivity of the fractures was evaluated by a packer test. To investigate the flow and transport of uranine and colloids through an in-situ fracture network, a fracture network transport model was newly developed. The model consists of a series of one-dimensional advection-dispersion-matrix diffusion equations for each channel of the fracture network. Using the fracture network transport model, the most probable representation and the hydrologic parameters of the fracture network can be estimated by fitting the breakthrough of uranine. While the fracture network might not be unique, the representation chosen was adequate to describe the breakthrough of uranine and it represents a reasonable approach to modeling transport in the fracture network. An additional evaluation showed that the colloid transport in this study was influenced by filtration on the fracture surface rather than the enhancement of the colloid velocity. Overall, the model can explain successfully the in-situ experimental results of uranine and colloid transports through the fracture network.

  13. Reactive Solute Transport in Streams: 1. Development of an Equilibrium-Based Model

    NASA Astrophysics Data System (ADS)

    Runkel, Robert L.; Bencala, Kenneth E.; Broshears, Robert E.; Chapra, Steven C.

    1996-02-01

    An equilibrium-based solute transport model is developed for the simulation of trace metal fate and transport in streams. The model is formed by coupling a solute transport model with a chemical equilibrium submodel based on MINTEQ. The solute transport model considers the physical processes of advection, dispersion, lateral inflow, and transient storage, while the equilibrium submodel considers the speciation and complexation of aqueous species, precipitation/dissolution and sorption. Within the model, reactions in the water column may result in the formation of solid phases (precipitates and sorbed species) that are subject to downstream transport and settling processes. Solid phases on the streambed may also interact with the water column through dissolution and sorption/desorption reactions. Consideration of both mobile (water-borne) and immobile (streambed) solid phases requires a unique set of governing differential equations and solution techniques that are developed herein. The partial differential equations describing physical transport and the algebraic equations describing chemical equilibria are coupled using the sequential iteration approach.

  14. Reactive solute transport in streams. 1. Development of an equilibrium- based model

    USGS Publications Warehouse

    Runkel, R.L.; Bencala, K.E.; Broshears, R.E.; Chapra, S.C.

    1996-01-01

    An equilibrium-based solute transport model is developed for the simulation of trace metal fate and transport in streams. The model is formed by coupling a solute transport model with a chemical equilibrium submodel based on MINTEQ. The solute transport model considers the physical processes of advection, dispersion, lateral inflow, and transient storage, while the equilibrium submodel considers the speciation and complexation of aqueous species, precipitation/dissolution and sorption. Within the model, reactions in the water column may result in the formation of solid phases (precipitates and sorbed species) that are subject to downstream transport and settling processes. Solid phases on the streambed may also interact with the water column through dissolution and sorption/desorption reactions. Consideration of both mobile (water-borne) and immobile (streambed) solid phases requires a unique set of governing differential equations and solution techniques that are developed herein. The partial differential equations describing physical transport and the algebraic equations describing chemical equilibria are coupled using the sequential iteration approach.

  15. Ash3d: A finite-volume, conservative numerical model for ash transport and tephra deposition

    USGS Publications Warehouse

    Schwaiger, Hans F.; Denlinger, Roger P.; Mastin, Larry G.

    2012-01-01

    We develop a transient, 3-D Eulerian model (Ash3d) to predict airborne volcanic ash concentration and tephra deposition during volcanic eruptions. This model simulates downwind advection, turbulent diffusion, and settling of ash injected into the atmosphere by a volcanic eruption column. Ash advection is calculated using time-varying pre-existing wind data and a robust, high-order, finite-volume method. Our routine is mass-conservative and uses the coordinate system of the wind data, either a Cartesian system local to the volcano or a global spherical system for the Earth. Volcanic ash is specified with an arbitrary number of grain sizes, which affects the fall velocity, distribution and duration of transport. Above the source volcano, the vertical mass distribution with elevation is calculated using a Suzuki distribution for a given plume height, eruptive volume, and eruption duration. Multiple eruptions separated in time may be included in a single simulation. We test the model using analytical solutions for transport. Comparisons of the predicted and observed ash distributions for the 18 August 1992 eruption of Mt. Spurr in Alaska demonstrate to the efficacy and efficiency of the routine.

  16. Dissolution-precipitation processes in tank experiments for testing numerical models for reactive transport calculations: Experiments and modelling

    NASA Astrophysics Data System (ADS)

    Poonoosamy, Jenna; Kosakowski, Georg; Van Loon, Luc R.; Mäder, Urs

    2015-06-01

    In the context of testing reactive transport codes and their underlying conceptual models, a simple 2D reactive transport experiment was developed. The aim was to use simple chemistry and design a reproducible and fast to conduct experiment, which is flexible enough to include several process couplings: advective-diffusive transport of solutes, effect of liquid phase density on advective transport, and kinetically controlled dissolution/precipitation reactions causing porosity changes. A small tank was filled with a reactive layer of strontium sulfate (SrSO4) of two different grain sizes, sandwiched between two layers of essentially non-reacting quartz sand (SiO2). A highly concentrated solution of barium chloride was injected to create an asymmetric flow field. Once the barium chloride reached the reactive layer, it forced the transformation of strontium sulfate into barium sulfate (BaSO4). Due to the higher molar volume of barium sulfate, its precipitation caused a decrease of porosity and lowered the permeability. Changes in the flow field were observed with help of dye tracer tests. The experiments were modelled using the reactive transport code OpenGeosys-GEM. Tests with non-reactive tracers performed prior to barium chloride injection, as well as the density-driven flow (due to the high concentration of barium chloride solution), could be well reproduced by the numerical model. To reproduce the mineral bulk transformation with time, two populations of strontium sulfate grains with different kinetic rates of dissolution were applied. However, a default porosity permeability relationship was unable to account for measured pressure changes. Post mortem analysis of the strontium sulfate reactive medium provided useful information on the chemical and structural changes occurring at the pore scale at the interface that were considered in our model to reproduce the pressure evolution with time.

  17. Dissolution-precipitation processes in tank experiments for testing numerical models for reactive transport calculations: Experiments and modelling.

    PubMed

    Poonoosamy, Jenna; Kosakowski, Georg; Van Loon, Luc R; Mäder, Urs

    2015-01-01

    In the context of testing reactive transport codes and their underlying conceptual models, a simple 2D reactive transport experiment was developed. The aim was to use simple chemistry and design a reproducible and fast to conduct experiment, which is flexible enough to include several process couplings: advective-diffusive transport of solutes, effect of liquid phase density on advective transport, and kinetically controlled dissolution/precipitation reactions causing porosity changes. A small tank was filled with a reactive layer of strontium sulfate (SrSO4) of two different grain sizes, sandwiched between two layers of essentially non-reacting quartz sand (SiO2). A highly concentrated solution of barium chloride was injected to create an asymmetric flow field. Once the barium chloride reached the reactive layer, it forced the transformation of strontium sulfate into barium sulfate (BaSO4). Due to the higher molar volume of barium sulfate, its precipitation caused a decrease of porosity and lowered the permeability. Changes in the flow field were observed with help of dye tracer tests. The experiments were modelled using the reactive transport code OpenGeosys-GEM. Tests with non-reactive tracers performed prior to barium chloride injection, as well as the density-driven flow (due to the high concentration of barium chloride solution), could be well reproduced by the numerical model. To reproduce the mineral bulk transformation with time, two populations of strontium sulfate grains with different kinetic rates of dissolution were applied. However, a default porosity permeability relationship was unable to account for measured pressure changes. Post mortem analysis of the strontium sulfate reactive medium provided useful information on the chemical and structural changes occurring at the pore scale at the interface that were considered in our model to reproduce the pressure evolution with time.

  18. Least-Squares Spectral Method for the solution of a fractional advection-dispersion equation

    NASA Astrophysics Data System (ADS)

    Carella, Alfredo Raúl; Dorao, Carlos Alberto

    2013-01-01

    Fractional derivatives provide a general approach for modeling transport phenomena occurring in diverse fields. This article describes a Least Squares Spectral Method for solving advection-dispersion equations using Caputo or Riemann-Liouville fractional derivatives. A Gauss-Lobatto-Jacobi quadrature is implemented to approximate the singularities in the integrands arising from the fractional derivative definition. Exponential convergence rate of the operator is verified when increasing the order of the approximation. Solutions are calculated for fractional-time and fractional-space differential equations. Comparisons with finite difference schemes are included. A significant reduction in storage space is achieved by lowering the resolution requirements in the time coordinate.

  19. SEBAL-A: A remote sensing ET algorithm that accounts for advection with limited data. Part II: Test for transferability

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Because the Surface Energy Balance Algorithm for Land (SEBAL) tends to underestimate ET under conditions of advection, the model was modified by incorporating an advection component as part of the energy usable for crop evapotranspiration (ET). The modification involved the estimation of advected en...

  20. Anomalous transport in fracture networks: field scale experiments and modelling

    NASA Astrophysics Data System (ADS)

    Kang, P. K.; Le Borgne, T.; Bour, O.; Dentz, M.; Juanes, R.

    2012-12-01

    Anomalous transport is widely observed in different settings and scales of transport through porous and fractured geologic media. A common signature of anomalous transport is the late-time power law tailing in breakthrough curves (BTCs) during tracer tests. Various conceptual models of anomalous transport have been proposed, including multirate mass transfer, continuous time random walk, and stream tube models. Since different conceptual models can produce equally good fits to a single BTC, tracer test interpretation has been plagued with ambiguity. Here, we propose to resolve such ambiguity by analyzing BTCs obtained from both convergent and push-pull flow configurations at two different fracture planes. We conducted field tracer tests in a fractured granite formation close to Ploemeur, France. We observe that BTC tailing depends on the flow configuration and the injection fracture. Specifically the tailing disappears under push-pull geometry, and when we injected at a fracture with high flux (Figure 1). This indicates that for this fractured granite, BTC tailing is controlled by heterogeneous advection and not by matrix diffusion. To explain the change in tailing behavior for different flow configurations, we employ a simple lattice network model with heterogeneous conductivity distribution. The model assigns random conductivities to the fractures and solves the Darcy equation for an incompressible fluid, enforcing mass conservation at fracture intersections. The mass conservation constraint yields a correlated random flow through the fracture system. We investigate whether BTC tailing can be explained by the spatial distribution of preferential flow paths and stagnation zones, which is controlled by the conductivity variance and correlation length. By combining the results from the field tests and numerical modeling, we show that the reversibility of spreading is a key mechanism that needs to be captured. We also demonstrate the dominant role of the injection

  1. Evaluation of 2001 springtime CO transport over West Africa using MOPITT CO measurements assimilated in a global chemistry transport model

    NASA Astrophysics Data System (ADS)

    Pradier, Stéphanie; Attié, Jean-Luc; Chong, Michel; Escobar, Juan; Peuch, Vincent-Henri; Lamarque, Jean-François; Khattatov, Boris; Edwards, David

    2006-07-01

    The global chemistry and transport model MOCAGE (Modèle de Chimie Atmosphérique à Grande Echelle) is used to investigate the contribution of transport to the carbon monoxide (CO) distribution over West Africa during spring 2001. It is constrained with the CO profiles provided by the Measurements Of Pollution In The Troposphere (MOPITT) instrument through a sequential assimilation technique based on a suboptimal Kalman filter. The improvement of tropospheric CO distribution from MOCAGE is evaluated by comparing the model results (with and without assimilation) with the MOPITT CO concentrations observed during the analysed period (between 2001 March 15 to 2001 April 30), and also with independent in situ CMDL and TRACE-P observations. The initial overestimation in high CO emissions areas (Africa, SE Asia and NW coast of South America) is considerably reduced by using the MOPITT CO assimilation. We analysed the assimilated CO for a period of three successive 15 d periods in terms of average fields over West Africa and contributions to the CO budget of transport and chemical sources. It is found that the horizontal and vertical CO distributions are strongly dependent on the characteristics of the large-scale flows during spring, marked by the onset of the low-level southerly monsoon flow and the gradual increase of the well-known African and tropical easterly jets at middle and upper levels, respectively. Total transport by the mean flow (horizontal plus vertical advection) is important in the CO budget since it mostly compensates the local sink or source generated by chemical reactions and small-scale processes. The major source of CO is concentrated in the lower troposphere (1000-800 hPa) mainly due to convergent low-level flow advecting CO from surrounding regions and surface emissions (biomass burning). Vertical transport removes 70% of this low-level CO and redistributes it in the middle troposphere (800-400 hPa) where chemical reactions and horizontal exports

  2. Anomalous Solute Transport in Saturated Porous Media: Linking Transport Model Parameters to Electrical and Nuclear Magnetic Resonance Properties

    NASA Astrophysics Data System (ADS)

    Swanson, R. D.; Binley, A. M.; Keating, K.; France, S.; Osterman, G. K.; Day-Lewis, F. D.; Singha, K.

    2013-12-01

    The advection-dispersion equation fails to describe non-Fickian solute transport in saturated porous media, necessitating the use of other models. The dual-domain mass transfer (DDMT) model partitions the total porosity into mobile and less-mobile domains with solute exchange between the domains; consequently, the DDMT model can produce a better fit to breakthrough curves (BTCs) in systems defined by more- and less-mobile components. However, direct experimental estimation of DDMT model parameters such as rate of exchange and the mobile and less-mobile porosities remains elusive. Consequently, model parameters are often calculated purely as a model fitting exercise. There is a clear need for material characterization techniques that can offer some insight into the pore space geometrical arrangement, particularly if such techniques can be extended to the field scale. Here, we interpret static direct-current (DC) resistivity, complex resistivity (CR) and nuclear magnetic resonance (NMR) geophysical measurements in the characterization of mass transfer parameters. We use two different samples of the zeolite clinoptilolite, a material shown to demonstrate solute mass transfer due to a significant intragranular porosity, along with glass beads as a control. We explore the relation between geophysical and DDMT parameters in conjunction with supporting material characterization methods. Our results reveal how these geophysical measurements can offer some insight into the pore structures controlling the observed anomalous transport behavior.

  3. Estimates of carbon sources and sinks using new NIES transport model

    NASA Astrophysics Data System (ADS)

    Kim, H.; Belikov, D.; Inoue, G.; Maksyutov, S.

    2008-12-01

    The NIES08, new version of the NIES transport model, has improved by increasing spatial resolution (1.25 deg × 1.25 deg) and more accurate advection (Van Leer, 1977) from former version (NIES99) with the spatial resolution of 2.5 deg × 2.5 deg and semi-Lagrangian advection. In this study, we estimate CO2 sources and sinks using NIES08, and study the influence of transport algorithms on inverse modeling by comparing NIES08 and other transport models. The NIES08 predicting stronger vertical mixing produces seasonal amplitudes which are closer to the observed seasonality. The interhemispheric difference (IHD) of surface mean CO2 concentration which is overestimated by NIES99 decreases in NIES08, and the IHD of NIES08 is lower as compared to average of transport models used in TransCom 3. The NIES08 estimates weaker northern land uptake (-1.3 Gt C year-1), which falls within standard deviation of the averaged flux of three models which estimate closest to the annual-mean vertical gradients of the atmospheric CO2 in results of Stephens et al. (2007). The northern land flux by NIES08 is estimated reasonably reflecting a seasonality and vertical gradient of CO2. In tropics, the NIES08 estimates strong land emission when compared with the difference between the northern land uptake and the tropical land emission in NIES99. There are still uncertainties because the tropical fluxes are less constrained by atmospheric CO2 measurements and because compensating variations in the tropical land fluxes are estimated in inversion.

  4. Two-point model for divertor transport

    SciTech Connect

    Galambos, J.D.; Peng, Y.K.M.

    1984-04-01

    Plasma transport along divertor field lines was investigated using a two-point model. This treatment requires considerably less effort to find solutions to the transport equations than previously used one-dimensional (1-D) models and is useful for studying general trends. It also can be a valuable tool for benchmarking more sophisticated models. The model was used to investigate the possibility of operating in the so-called high density, low temperature regime.

  5. Uncertainty in tsunami sediment transport modeling

    USGS Publications Warehouse

    Jaffe, Bruce E.; Goto, Kazuhisa; Sugawara, Daisuke; Gelfenbaum, Guy R.; La Selle, SeanPaul M.

    2016-01-01

    Erosion and deposition from tsunamis record information about tsunami hydrodynamics and size that can be interpreted to improve tsunami hazard assessment. We explore sources and methods for quantifying uncertainty in tsunami sediment transport modeling. Uncertainty varies with tsunami, study site, available input data, sediment grain size, and model. Although uncertainty has the potential to be large, published case studies indicate that both forward and inverse tsunami sediment transport models perform well enough to be useful for deciphering tsunami characteristics, including size, from deposits. New techniques for quantifying uncertainty, such as Ensemble Kalman Filtering inversion, and more rigorous reporting of uncertainties will advance the science of tsunami sediment transport modeling. Uncertainty may be decreased with additional laboratory studies that increase our understanding of the semi-empirical parameters and physics of tsunami sediment transport, standardized benchmark tests to assess model performance, and development of hybrid modeling approaches to exploit the strengths of forward and inverse models.

  6. Modeling of heat transport through Fractures with emphasis to roughness and aperture variability

    NASA Astrophysics Data System (ADS)

    Nigon, Benoit; Englert, Andreas; Pascal, Christophe

    2015-04-01

    Fractured media are characterized by multi-scale heterogeneities implying high spatial variability of hydraulic properties. At the fracture network scale, spatial organization of fluxes is controlled by the fracture network geometry, itself characterized by fracture connectivity, fracture density, and the respective lengths and apertures of the fractures within the network. At the fracture scale, the variability of the fluxes is mainly controlled by fracture roughness and aperture variability. The multi-scale heterogeneities of fractured rocks imply complexities for prediction of solute and heat transport in space and time, and often lead to the so-called "anomalous transport" behavior. In homogeneous media, heat transport can be described using Fourier's law opening the possibility to apply the advection-dispersion equation to predict transport behavior. However, in real fractured media a "non-Fourier transport" often dominates. The latter phenomenon, characterized by asymmetric breakthrough shape, early breakthrough and long tailing cannot be described by the classical advection-dispersion equation. In the present study, we focus on heat transport within a single fracture and we explore the respective roles of fracture roughness and aperture variability. Fracture roughness has two main effects on heat transport, flow channeling and a spatial variation of heat exchange area between fluid and rock. Fracture aperture variability controls the variability of fracture flow, and thus induces spatial variation of heat transport in a fracture. Micro- to macro-scale fracture roughness measurements will be performed in the field and the laboratory using a terrestrial LIDAR, a X-Ray CT-Scanner Alpha, and a Microscope Keyence VHX 100. Thereafter the measurements will be used to better describe fracture geometry taking in account discontinuity type. To further improve the understanding of heat transfer between fracture and matrix, we will numerically model heat transport as

  7. Advective-diffusive contaminant migration in unsaturated sand and gravel

    SciTech Connect

    Rowe, R.K.; Badv, K.

    1996-12-01

    A method is presented for estimating the diffusion coefficients for chloride and sodium in unsaturated coarse sand and fine gravel based on parameters obtained from saturated diffusion tests conducted for similar material. The method is tested by comparing the observed and predicted diffusion profiles through unsaturated soil. The method is shown to work well for predicting the advective-diffusive migration of chloride and sodium through a two-layer soil system consisting of a compacted clayey silt underlain by an unsaturated fine gravel. Over the range of conditions examined, it is concluded that existing solute transport theory along with the proposed procedure for estimating the unsaturated diffusion coefficients can adequately predict chloride and sodium diffusion through both unsaturated coarse sand and fine gravel as well as predict advective-diffusive transport through a compacted clayey layer and underlying unsaturated fine gravel.

  8. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in MagLIF-like plasma

    SciTech Connect

    Velikovich, A. L. Giuliani, J. L.; Zalesak, S. T.

    2014-12-15

    The MagLIF approach to inertial confinement fusion involves subsonic/isobaric compression and heating of a DT plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot plasma to the cold liner is dominated by the transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter ω{sub e}τ{sub e} effective diffusion coefficients determining the losses of heat and magnetic flux are both shown to decrease with ω{sub e}τ{sub e} as does the Bohm diffusion coefficient, which is commonly associated with low collisionality and two-dimensional transport. This family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  9. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in magnetized liner inertial fusion-like plasma

    SciTech Connect

    Velikovich, A. L.; Giuliani, J. L.; Zalesak, S. T.

    2015-04-15

    The magnetized liner inertial fusion (MagLIF) approach to inertial confinement fusion [Slutz et al., Phys. Plasmas 17, 056303 (2010); Cuneo et al., IEEE Trans. Plasma Sci. 40, 3222 (2012)] involves subsonic/isobaric compression and heating of a deuterium-tritium plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion, and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot compressed magnetized plasma to the cold liner is dominated by transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter (ω{sub e}τ{sub e}≫1), the effective diffusion coefficients determining the losses of heat and magnetic flux to the liner wall are both shown to decrease with ω{sub e}τ{sub e} as does the Bohm diffusion coefficient cT/(16eB), which is commonly associated with low collisionality and two-dimensional transport. We demonstrate how this family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  10. Magnetic flux and heat losses by diffusive, advective, and Nernst effects in magnetized liner inertial fusion-like plasma

    NASA Astrophysics Data System (ADS)

    Velikovich, A. L.; Giuliani, J. L.; Zalesak, S. T.

    2015-04-01

    The magnetized liner inertial fusion (MagLIF) approach to inertial confinement fusion [Slutz et al., Phys. Plasmas 17, 056303 (2010); Cuneo et al., IEEE Trans. Plasma Sci. 40, 3222 (2012)] involves subsonic/isobaric compression and heating of a deuterium-tritium plasma with frozen-in magnetic flux by a heavy cylindrical liner. The losses of heat and magnetic flux from the plasma to the liner are thereby determined by plasma advection and gradient-driven transport processes, such as thermal conductivity, magnetic field diffusion, and thermomagnetic effects. Theoretical analysis based on obtaining exact self-similar solutions of the classical collisional Braginskii's plasma transport equations in one dimension demonstrates that the heat loss from the hot compressed magnetized plasma to the cold liner is dominated by transverse heat conduction and advection, and the corresponding loss of magnetic flux is dominated by advection and the Nernst effect. For a large electron Hall parameter ( ωeτe≫1 ), the effective diffusion coefficients determining the losses of heat and magnetic flux to the liner wall are both shown to decrease with ωeτe as does the Bohm diffusion coefficient c T /(16 e B ) , which is commonly associated with low collisionality and two-dimensional transport. We demonstrate how this family of exact solutions can be used for verification of codes that model the MagLIF plasma dynamics.

  11. A model for particle-selective transport of tracers in sediments with conveyor belt deposit feeders

    NASA Astrophysics Data System (ADS)

    Robbins, John A.

    1986-07-01

    Conveyor belt deposit-feeding organisms prevalent in both marine and freshwater systems have a profound effect on sediment properties and transport processes. These organisms ingest sediments over a range of depths while depositing gut contents from tails protruding above the sediment surface. This action results in particle-selective transfer of buried materials to the sediment surface and imposes an accelerated rate of sediment and pore water burial within the feeding zone. Most previous efforts to combine sediment diagenesis with the effects of biogenic reworking characterize mixing as exclusively diffusive and ignore such major advective effects. Here a model is developed, based on fundamental diagenetic equations for transport and reaction, for the distribution of tracers in accumulating sediments subject to compaction and diffusive as well as advective redistribution by benthic organisms. Conveyor belt (CB) feeding is characterized as a first-order process with a depth-dependent rate constant which is either localized (Gaussian) or distributed (integrated Gaussian). Biogenic diffusivity of bulk sediments is allowed these alternative depth dependences as well. The model assumes simple linear adsorption of the tracer between solid and solution phases and uses a time-dependent flux at (x = 0) which is a combination of that originating externally and the depth-integrated contributions from feeding. Particle selectivity is introduced by applying mass conservation separately to transport of the tracer and bulk sediments. Properties of the model are illustrated for tracers in nondispersive systems strongly bound to sediment solids. CB recycling gives rise to transient reflections on passage of a tracer pulse through the zone of bioturbation. Reflections readily disappear in the presence of various integrative processes. The system time resolution is defined in terms of the downward propagation of dual tracer pulses and shown to be systematically degraded by

  12. Charge-transport model for conducting polymers

    NASA Astrophysics Data System (ADS)

    Dongmin Kang, Stephen; Jeffrey Snyder, G.

    2016-11-01

    The growing technological importance of conducting polymers makes the fundamental understanding of their charge transport extremely important for materials and process design. Various hopping and mobility edge transport mechanisms have been proposed, but their experimental verification is limited to poor conductors. Now that advanced organic and polymer semiconductors have shown high conductivity approaching that of metals, the transport mechanism should be discernible by modelling the transport like a semiconductor with a transport edge and a transport parameter s. Here we analyse the electrical conductivity and Seebeck coefficient together and determine that most polymers (except possibly PEDOT:tosylate) have s = 3 and thermally activated conductivity, whereas s = 1 and itinerant conductivity is typically found in crystalline semiconductors and metals. The different transport in polymers may result from the percolation of charge carriers from conducting ordered regions through poorly conducting disordered regions, consistent with what has been expected from structural studies.

  13. A Quasi-Conservative Adaptive Semi-Lagrangian Advection-Diffusion Scheme

    NASA Astrophysics Data System (ADS)

    Behrens, Joern

    2014-05-01

    Many processes in atmospheric or oceanic tracer transport are conveniently represented by advection-diffusion type equations. Depending on the magnitudes of both components, the mathematical representation and consequently the discretization is a non-trivial problem. We will focus on advection-dominated situations and will introduce a semi-Lagrangian scheme with adaptive mesh refinement for high local resolution. This scheme is well suited for pollutant transport from point sources, or transport processes featuring fine filamentation with corresponding local concentration maxima. In order to achieve stability, accuracy and conservation, we combine an adaptive mesh refinement quasi-conservative semi-Lagrangian scheme, based on an integral formulation of the underlying advective conservation law (Behrens, 2006), with an advection diffusion scheme as described by Spiegelman and Katz (2006). The resulting scheme proves to be conservative and stable, while maintaining high computational efficiency and accuracy.

  14. Modeling solute transport through saturated zone ground water at 10 km scale: Example from the Yucca Mountain license application

    NASA Astrophysics Data System (ADS)

    Kelkar, Sharad; Ding, Mei; Chu, Shaoping; Robinson, Bruce A.; Arnold, Bill; Meijer, Arend; Eddebbarh, Al-Aziz

    2010-09-01

    This paper presents a study of solute transport through ground water in the saturated zone and the resulting breakthrough curves (BTCs), using a field-scale numerical model that incorporates the processes of advection, dispersion, matrix diffusion in fractured volcanic formations, sorption, and colloid-facilitated transport. Such BTCs at compliance boundaries are often used as performance measures for a site. The example considered here is that of the saturated zone study prepared for the Yucca Mountain license application. The saturated zone at this site occurs partly in volcanic, fractured rock formations and partly in alluvial formations. This paper presents a description of the site and the ground water flow model, the development of the conceptual model of transport, model uncertainties, model validation, and the influence of uncertainty in input parameters on the downstream BTCs at the Yucca Mountain site.

  15. Numerical models of transient partial melting of the lower crust during repeated emplacement of basalt sills and subsequent cooling due to advection of melt out of the lower crust

    NASA Astrophysics Data System (ADS)

    Lim, S.; Hetland, E. A.; Lange, R. A.

    2012-12-01

    The thermal evolution of arc crust can be modeled as a consequence of repeated emplacement of basaltic sills in the lower crust, along with subsequent advection of melt up the crustal column or erupted to the surface. Melt that advects from the lower to the upper crust might be either residual melt from the solidifying basaltic intrusion or partial melt of the crust surrounding the intrusion. Considering only emplacement of basaltic sills, after 100's of sill emplacements (assuming 1285°C sills at a rate of 50 m per 10 kyr), temperatures are >900°C for a significant fraction of the lower crustal column. In this view, much of the lower crust may be partially molten after 3 Myr, with sustained melt fractions >20%. At such high melt fractions, melt can segregate and migrate over large distances (Vigneress and Tikoff, 1999), and it is therefore expected that a significant amount of this melt will be emplaced into the upper crust as granitoids or erupted on the surface as andesite/dacite. Numerically modeling the thermal evolution of the crust in response to repeated sill emplacement and vertical migration of melt is a challenge due to the large range in spatial and temporal scales, where sills are 10-50 m thick vs. a 20-40 km thick crust and where solidification/melting occurs over hundreds of years vs. the 1-3 million years to capture the full thermal evolution of the crust. We have developed two numerical techniques with adaptive spatial and temporal resolution (a 1D finite-difference method and a 2D finite-element method) in order to explore the various phases of the thermal evolution of arc crust. We focus the 1D models on the thermal evolution of the entire crust due to repeated emplacement of basaltic sills over several million years, and we achieve meter level resolution. Thus far we have only considered secondary advection of residual melt from the solidifying basaltic sills. After 100's of emplacements advection of this melt results in cooling, with

  16. Jet Magnetically Accelerated from Advection Dominated Accretion Flow

    NASA Astrophysics Data System (ADS)

    Gong, Xiao-Long; Jiang, Zhi-Xiong

    2014-08-01

    A jet model for the jet power arising from a steady, optically thin, advection dominated accretion flow (ADAF) around a Kerr black hole (BH) is proposed. We investigate the typical numerical solutions of ADAF, and calculate the jet power from an ADAF using a general relativistic version of electronic circuit theory. It is shown that the jet power concentrates in the inner region of the accretion flow, and the higher the degree to which the flow advection-dominated is, the lower the jet power from the ADAF is.

  17. Multi-component reactive transport modeling of natural attenuation of an acid groundwater plume at a uranium mill tailings site

    NASA Astrophysics Data System (ADS)

    Zhu, Chen; Hu, Fang Q.; Burden, David S.

    2001-11-01

    Natural attenuation of an acidic plume in the aquifer underneath a uranium mill tailings pond in Wyoming, USA was simulated using the multi-component reactive transport code PHREEQC. A one-dimensional model was constructed for the site and the model included advective-dispersive transport, aqueous speciation of 11 components, and precipitation-dissolution of six minerals. Transport simulation was performed for a reclamation scenario in which the source of acidic seepage will be terminated after 5 years and the plume will then be flushed by uncontaminated upgradient groundwater. Simulations show that successive pH buffer reactions with calcite, Al(OH) 3(a), and Fe(OH) 3(a) create distinct geochemical zones and most reactions occur at the boundaries of geochemical zones. The complex interplay of physical transport processes and chemical reactions produce multiple concentration waves. For SO 42- transport, the concentration waves are related to advection-dispersion, and gypsum precipitation and dissolution. Wave speeds from numerical simulations compare well to an analytical solution for wave propagation.

  18. Multi-component reactive transport modeling of natural attenuation of an acid groundwater plume at a uranium mill tailings site.

    PubMed

    Zhu, C; Hu, F Q; Burden, D S

    2001-11-01

    Natural attenuation of an acidic plume in the aquifer underneath a uranium mill tailings pond in Wyoming, USA was simulated using the multi-component reactive transport code PHREEQC. A one-dimensional model was constructed for the site and the model included advective-dispersive transport, aqueous speciation of 11 components, and precipitation-dissolution of six minerals. Transport simulation was performed for a reclamation scenario in which the source of acidic seepage will be terminated after 5 years and the plume will then be flushed by uncontaminated upgradient groundwater. Simulations show that successive pH buffer reactions with calcite, Al(OH)3(a), and Fe(OH)3(a) create distinct geochemical zones and most reactions occur at the boundaries of geochemical zones. The complex interplay of physical transport processes and chemical reactions produce multiple concentration waves. For SO4(2-) transport, the concentration waves are related to advection-dispersion, and gypsum precipitation and dissolution. Wave speeds from numerical simulations compare well to an analytical solution for wave propagation.

  19. Diffusion Dominant Solute Transport Modelling in Fractured Media Under Deep Geological Environment - 12211

    SciTech Connect

    Kwong, S.; Jivkov, A.P.

    2012-07-01

    Deep geologic disposal of high activity and long-lived radioactive waste is gaining increasing support in many countries, where suitable low permeability geological formation in combination with engineered barriers are used to provide long term waste contaminant and minimise the impacts to the environment and risk to the biosphere. This modelling study examines the solute transport in fractured media under low flow velocities that are relevant to a deep geological environment. In particular, reactive solute transport through fractured media is studied using a 2-D model, that considers advection and diffusion, to explore the coupled effects of kinetic and equilibrium chemical processes. The effects of water velocity in the fracture, matrix porosity and diffusion on solute transport are investigated and discussed. Some illustrative modelled results are presented to demonstrate the use of the model to examine the effects of media degradation on solute transport, under the influences of hydrogeological (diffusion dominant) and microbially mediated chemical processes. The challenges facing the prediction of long term degradation such as cracks evolution, interaction and coalescence are highlighted. The potential of a novel microstructure informed modelling approach to account for these effects is discussed, particularly with respect to investigating multiple phenomena impact on material performance. The GRM code is used to examine the effects of media degradation for a geological waste disposal package, under the combined hydrogeological (diffusion dominant) and chemical effects in low groundwater flow conditions that are typical of deep geological disposal systems. An illustrative reactive transport modelling application demonstrates the use of the code to examine the interplay of kinetic controlled biogeochemical reactive processes with advective and diffusive transport, under the influence of media degradation. The initial model results are encouraging which show the

  20. Anomalous transport modelling of tokamak plasmas

    SciTech Connect

    Kinsey, J.; Singer, C.; Malone, G.; Tiouririne, N.

    1992-12-31

    Theory based transport simulations of DIII-D, JET, ITER are compared to experimental data using a combination of anamolous transport models. The Multiple-mode Transport Model is calibrated to a give set of L-mode and H-mode discharges with an emphasis on testing the adequacy of anomalous flux contributions from drift/{eta}{sub i} and resistive ballooning mode theories. A survey of possible additions and/or alternatives to the model from recent theories on neoclassical MHD effects, hot ion modes, circulating electron modes, and high-m tearing modes is also included.

  1. Anomalous transport modelling of tokamak plasmas

    SciTech Connect

    Kinsey, J.; Singer, C.; Malone, G.; Tiouririne, N.

    1992-01-01

    Theory based transport simulations of DIII-D, JET, ITER are compared to experimental data using a combination of anamolous transport models. The Multiple-mode Transport Model is calibrated to a give set of L-mode and H-mode discharges with an emphasis on testing the adequacy of anomalous flux contributions from drift/[eta][sub i] and resistive ballooning mode theories. A survey of possible additions and/or alternatives to the model from recent theories on neoclassical MHD effects, hot ion modes, circulating electron modes, and high-m tearing modes is also included.

  2. Chemical transport in a fissured rock: Verification of a numerical model

    SciTech Connect

    Rasmuson, A.; Narasimhan, T. N.; Neretnieks, I.

    1982-10-01

    Numerical models for simulating chemical transport in fissured rocks constitute powerful tools for evaluating the acceptability of geological nuclear waste repositories. Due to the very long-term, high toxicity of some nuclear waste products, the models are required to predict, in certain cases, the spatial and temporal distribution of chemical concentration less than 0.001% of the concentration released from the repository. Whether numerical models can provide such accuracies is a major question addressed in the present work. To this end, we have verified a numerical model, TRUMP, which solves the advective diffusion equation in general three dimensions with or without decay and source terms. The method is based on an integrated finite-difference approach. The model was verified against known analytic solution of the one-dimensional advection-diffusion problem as well as the problem of advection-diffusion in a system of parallel fractures separated by spherical particles. The studies show that as long as the magnitude of advectance is equal to or less than that of conductance for the closed surface bounding any volume element in the region (that is, numerical Peclet number <2), the numerical method can indeed match the analytic solution within errors of ±10{sup -3} % or less. The realistic input parameters used in the sample calculations suggest that such a range of Peclet numbers is indeed likely to characterize deep groundwater systems in granitic and ancient argillaceous systems. Thus TRUMP in its present form does provide a viable tool for use in nuclear waste evaluation studies. A sensitivity analysis based on the analytic solution suggests that the errors in prediction introduced due to uncertainties in input parameters is likely to be larger than the computational inaccuracies introduced by the numerical model. Currently, a disadvantage in the TRUMP model is that the iterative method of solving the set of simultaneous equations is rather slow when time

  3. Chemical Transport in a Fissured Rock: Verification of a Numerical Model

    NASA Astrophysics Data System (ADS)

    Rasmuson, A.; Narasimhan, T. N.; Neretnieks, I.

    1982-10-01

    Numerical models for simulating chemical transport in fissured rocks constitute powerful tools for evaluating the acceptability of geological nuclear waste repositories. Due to the very long-term, high toxicity of some nuclear waste products, the models are required to predict, in certain cases, the spatial and temporal distribution of chemical concentration less than 0.001% of the concentration released from the repository. Whether numerical models can provide such accuracies is a major question addressed in the present work. To this end we have verified a numerical model, TRUMP, which solves the advective diffusion equation in general three dimensions, with or without decay and source terms. The method is based on an integrated finite difference approach. The model was verified against known analytic solution of the one-dimensional advection-diffusion problem, as well as the problem of advection-diffusion in a system of parallel fractures separated by spherical particles. The studies show that as long as the magnitude of advectance is equal to or less than that of conductance for the closed surface bounding any volume element in the region (that is, numerical Peclet number <2), the numerical method can indeed match the analytic solution within errors of ±10-3% or less. The realistic input parameters used in the sample calculations suggest that such a range of Peclet numbers is indeed likely to characterize deep groundwater systems in granitic and ancient argillaceous systems. Thus TRUMP in its present form does provide a viable tool for use in nuclear waste evaluation studies. A sensitivity analysis based on the analytic solution suggests that the errors in prediction introduced due to uncertainties in input parameters are likely to be larger than the computational inaccuracies introduced by the numerical model. Currently, a disadvantage in the TRUMP model is that the iterative method of solving the set of simultaneous equations is rather slow when time

  4. Evolution and advection of solar mesogranulation

    NASA Technical Reports Server (NTRS)

    Muller, Richard; Auffret, Herve; Roudier, Thierry; Vigneau, Jean; Simon, George W.; Frank, Zoe; Shine, Richard A.; Title, Alan M.

    1992-01-01

    A three-hour sequence of observations at the Pic du Midi observatory has been obtained which shows the evolution of solar mesogranules from appearance to disappearance with unprecedented clarity. It is seen that the supergranules, which are known to advect the granules with their convective motion, also advect the mesogranules to their boundaries. This process controls the evolution and disappearance of mesogranules.

  5. Effect of gravity on colloid transport through water-saturated columns packed with glass beads: modeling and experiments.

    PubMed

    Chrysikopoulos, Constantinos V; Syngouna, Vasiliki I

    2014-06-17

    The role of gravitational force on colloid transport in water-saturated columns packed with glass beads was investigated. Transport experiments were performed with colloids (clays: kaolinite KGa-1b, montmorillonite STx-1b). The packed columns were placed in various orientations (horizontal, vertical, and diagonal) and a steady flow rate of Q = 1.5 mL/min was applied in both up-flow and down-flow modes. All experiments were conducted under electrostatically unfavorable conditions. The experimental data were fitted with a newly developed, analytical, one-dimensional, colloid transport model. The effect of gravity is incorporated in the mathematical model by combining the interstitial velocity (advection) with the settling velocity (gravity effect). The results revealed that flow direction influences colloid transport in porous media. The rate of particle deposition was shown to be greater for up-flow than for down-flow direction, suggesting that gravity was a significant driving force for colloid deposition.

  6. Black Hole Advective Accretion Disks with Optical Depth Transition

    SciTech Connect

    Artemove, Y.V.; Bisnovatyi-Kogan, G.S.; Igumenshchev, I.V.; Novikov, I.D.

    2006-02-01

    We have constructed numerically global solutions of advective accretion disks around black holes that describe a continuous transition between the effectively optically thick outer and optically thin inner disk regions. We have concentrated on models of accretion flows with large mass accretion rates, and we have employed a bridging formula for radiative losses at high and low effective optical depths.

  7. Analytically-derived sensitivities in one-dimensional models of solute transport in porous media

    USGS Publications Warehouse

    Knopman, D.S.

    1987-01-01

    Analytically-derived sensitivities are presented for parameters in one-dimensional models of solute transport in porous media. Sensitivities were derived by direct differentiation of closed form solutions for each of the odel, and by a time integral method for two of the models. Models are based on the advection-dispersion equation and include adsorption and first-order chemical decay. Boundary conditions considered are: a constant step input of solute, constant flux input of solute, and exponentially decaying input of solute at the upstream boundary. A zero flux is assumed at the downstream boundary. Initial conditions include a constant and spatially varying distribution of solute. One model simulates the mixing of solute in an observation well from individual layers in a multilayer aquifer system. Computer programs produce output files compatible with graphics software in which sensitivities are plotted as a function of either time or space. (USGS)

  8. Modeling Np and Pu transport with a surface complexation model and spatially variant sorption capacities: Implications for reactive transport modeling and performance assessments of nuclear waste disposal sites

    USGS Publications Warehouse

    Glynn, P.D.

    2003-01-01

    One-dimensional (1D) geochemical transport modeling is used to demonstrate the effects of speciation and sorption reactions on the ground-water transport of Np and Pu, two redox-sensitive elements. Earlier 1D simulations (Reardon, 1981) considered the kinetically limited dissolution of calcite and its effect on ion-exchange reactions (involving 90Sr, Ca, Na, Mg and K), and documented the spatial variation of a 90Sr partition coefficient under both transient and steady-state chemical conditions. In contrast, the simulations presented here assume local equilibrium for all reactions, and consider sorption on constant potential, rather than constant charge, surfaces. Reardon's (1981) seminal findings on the spatial and temporal variability of partitioning (of 90Sr) are reexamined and found partially caused by his assumption of a kinetically limited reaction. In the present work, sorption is assumed the predominant retardation process controlling Pu and Np transport, and is simulated using a diffuse-double-layer-surface-complexation (DDLSC) model. Transport simulations consider the infiltration of Np- and Pu-contaminated waters into an initially uncontaminated environment, followed by the cleanup of the resultant contamination with uncontaminated water. Simulations are conducted using different spatial distributions of sorption capacities (with the same total potential sorption capacity, but with different variances and spatial correlation structures). Results obtained differ markedly from those that would be obtained in transport simulations using constant Kd, Langmuir or Freundlich sorption models. When possible, simulation results (breakthrough curves) are fitted to a constant K d advection-dispersion transport model and compared. Functional differences often are great enough that they prevent a meaningful fit of the simulation results with a constant K d (or even a Langmuir or Freundlich) model, even in the case of Np, a weakly sorbed radionuclide under the

  9. Polar auxin transport: models and mechanisms.

    PubMed

    van Berkel, Klaartje; de Boer, Rob J; Scheres, Ben; ten Tusscher, Kirsten

    2013-06-01

    Spatial patterns of the hormone auxin are important drivers of plant development. The observed feedback between the active, directed transport that generates auxin patterns and the auxin distribution that influences transport orientation has rendered this a popular subject for modelling studies. Here we propose a new mathematical framework for the analysis of polar auxin transport and present a detailed mathematical analysis of published models. We show that most models allow for self-organised patterning for similar biological assumptions, and find that the pattern generated is typically unidirectional, unless additional assumptions or mechanisms are incorporated. Our analysis thus suggests that current models cannot explain the bidirectional fountain-type patterns found in plant meristems in a fully self-organised manner, and we discuss future research directions to address the gaps in our understanding of auxin transport mechanisms.

  10. Highway and interline transportation routing models

    SciTech Connect

    Joy, D.S.; Johnson, P.E.

    1994-06-01

    The potential impacts associated with the transportation of hazardous materials are important issues to shippers, carriers, and the general public. Since transportation routes are a central characteristic in most of these issues, the prediction of likely routes is the first step toward the resolution of these issues. In addition, US Department of Transportation requirements (HM-164) mandate specific routes for shipments of highway controlled quantities of radioactive materials. In response to these needs, two routing models have been developed at Oak Ridge National Laboratory under the sponsorship of the U.S. Department of Energy (DOE). These models have been designated by DOE`s Office of Environmental Restoration and Waste Management, Transportation Management Division (DOE/EM) as the official DOE routing models. Both models, HIGHWAY and INTERLINE, are described.

  11. NODA for EPA's Updated Ozone Transport Modeling

    EPA Pesticide Factsheets

    Find EPA's NODA for the Updated Ozone Transport Modeling Data for the 2008 Ozone National Ambient Air Quality Standard (NAAQS) along with the ExitExtension of Public Comment Period on CSAPR for the 2008 NAAQS.

  12. Lattice Boltzmann method for the fractional advection-diffusion equation.

    PubMed

    Zhou, J G; Haygarth, P M; Withers, P J A; Macleod, C J A; Falloon, P D; Beven, K J; Ockenden, M C; Forber, K J; Hollaway, M J; Evans, R; Collins, A L; Hiscock, K M; Wearing, C; Kahana, R; Villamizar Velez, M L

    2016-04-01

    Mass transport, such as movement of phosphorus in soils and solutes in rivers, is a natural phenomenon and its study plays an important role in science and engineering. It is found that there are numerous practical diffusion phenomena that do not obey the classical advection-diffusion equation (ADE). Such diffusion is called abnormal or superdiffusion, and it is well described using a fractional advection-diffusion equation (FADE). The FADE finds a wide range of applications in various areas with great potential for studying complex mass transport in real hydrological systems. However, solution to the FADE is difficult, and the existing numerical methods are complicated and inefficient. In this study, a fresh lattice Boltzmann method is developed for solving the fractional advection-diffusion equation (LabFADE). The FADE is transformed into an equation similar to an advection-diffusion equation and solved using the lattice Boltzmann method. The LabFADE has all the advantages of the conventional lattice Boltzmann method and avoids a complex solution procedure, unlike other existing numerical methods. The method has been validated through simulations of several benchmark tests: a point-source diffusion, a boundary-value problem of steady diffusion, and an initial-boundary-value problem of unsteady diffusion with the coexistence of source and sink terms. In addition, by including the effects of the skewness β, the fractional order α, and the single relaxation time τ, the accuracy and convergence of the method have been assessed. The numerical predictions are compared with the analytical solutions, and they indicate that the method is second-order accurate. The method presented will allow the FADE to be more widely applied to complex mass transport problems in science and engineering.

  13. Lattice Boltzmann method for the fractional advection-diffusion equation

    NASA Astrophysics Data System (ADS)

    Zhou, J. G.; Haygarth, P. M.; Withers, P. J. A.; Macleod, C. J. A.; Falloon, P. D.; Beven, K. J.; Ockenden, M. C.; Forber, K. J.; Hollaway, M. J.; Evans, R.; Collins, A. L.; Hiscock, K. M.; Wearing, C.; Kahana, R.; Villamizar Velez, M. L.

    2016-04-01

    Mass transport, such as movement of phosphorus in soils and solutes in rivers, is a natural phenomenon and its study plays an important role in science and engineering. It is found that there are numerous practical diffusion phenomena that do not obey the classical advection-diffusion equation (ADE). Such diffusion is called abnormal or superdiffusion, and it is well described using a fractional advection-diffusion equation (FADE). The FADE finds a wide range of applications in various areas with great potential for studying complex mass transport in real hydrological systems. However, solution to the FADE is difficult, and the existing numerical methods are complicated and inefficient. In this study, a fresh lattice Boltzmann method is developed for solving the fractional advection-diffusion equation (LabFADE). The FADE is transformed into an equation similar to an advection-diffusion equation and solved using the lattice Boltzmann method. The LabFADE has all the advantages of the conventional lattice Boltzmann method and avoids a complex solution procedure, unlike other existing numerical methods. The method has been validated through simulations of several benchmark tests: a point-source diffusion, a boundary-value problem of steady diffusion, and an initial-boundary-value problem of unsteady diffusion with the coexistence of source and sink terms. In addition, by including the effects of the skewness β , the fractional order α , and the single relaxation time τ , the accuracy and convergence of the method have been assessed. The numerical predictions are compared with the analytical solutions, and they indicate that the method is second-order accurate. The method presented will allow the FADE to be more widely applied to complex mass transport problems in science and engineering.

  14. Advective velocity and energy dissipation rate in an oscillatory flow.

    PubMed

    Haider, Ziaul; Hondzo, Miki; Porte-Agel, Fernando

    2005-07-01

    Characterizing the transport processes at the sediment-water interface along sloping boundaries in lakes and reservoirs is of fundamental interest in lake and reservoir water quality management. The turbulent bottom boundary layer (TBBL) along a slope, induced by the breaking of internal waves in a linearly stratified fluid, was investigated through laboratory measurements. Fast response micro-scale conductivity and temperature probes in conjunction with laser-Doppler velocimetry were used to measure the time series of salinity, temperature, and velocity along a sloping boundary. Turbulent energy spectra were computed from the velocity data using a time-dependent advective velocity and Taylor's hypothesis. The energy spectra were used to estimate the energy dissipation rate at different positions in the TBBL. The advective velocity in this near-zero mean shear flow is based on an integral time scale (T(int)). The integral time scale is related to the average frequency of the spectral energy density of the flow velocity. The energy dissipation rate estimated from the variable advective velocity with an averaging time window equal to the integral time scale (T=T(int)) was 43% higher than the energy dissipation rate estimated from a constant advective velocity. The estimated dissipation rates with T=T(int) were comparable to values obtained by curve-fitting a theoretical Batchelor spectrum for the temperature gradient spectra. This study proposes the integral time scale to be used for the oscillatory flows as (a) a time-averaging window to estimate the advective velocity and associated energy dissipation level, and (b) a normalizing parameter in the energy spectrum.

  15. Mathematical modeling plasma transport in tokamaks

    SciTech Connect

    Quiang, Ji

    1997-01-01

    In this work, the author applied a systematic calibration, validation and application procedure based on the methodology of mathematical modeling to international thermonuclear experimental reactor (ITER) ignition studies. The multi-mode plasma transport model used here includes a linear combination of drift wave branch and ballooning branch instabilities with two a priori uncertain constants to account for anomalous plasma transport in tokamaks. A Bayesian parameter estimation method is used including experimental calibration error/model offsets and error bar rescaling factors to determine the two uncertain constants in the transport model with quantitative confidence level estimates for the calibrated parameters, which gives two saturation levels of instabilities. This method is first tested using a gyroBohm multi-mode transport model with a pair of DIII-D discharge experimental data, and then applied to calibrating a nominal multi-mode transport model against a broad database using twelve discharges from seven different tokamaks. The calibrated transport model is then validated on five discharges from JT-60 with no adjustable constants. The results are in a good agreement with experimental data. Finally, the resulting class of multi-mode tokamak plasma transport models is applied to the transport analysis of the ignition probability in a next generation machine, ITER. A reference simulation of basic ITER engineering design activity (EDA) parameters shows that a self-sustained thermonuclear burn with 1.5 GW output power can be achieved provided that impurity control makes radiative losses sufficiently small at an average plasma density of 1.2 X 1020/m3 with 50 MW auxiliary heating. The ignition probability of ITER for the EDA parameters, can be formally as high as 99.9% in the present context. The same probability for concept design activity (CDA) parameters of ITER, which has smaller size and lower current, is only 62.6%.

  16. One-Dimensional Transport with Inflow and Storage (OTIS): A Solute Transport Model for Streams and Rivers

    USGS Publications Warehouse

    Runkel, Robert L.

    1998-01-01

    OTIS is a mathematical simulation model used to characterize the fate and transport of water-borne solutes in streams and rivers. The governing equation underlying the model is the advection-dispersion equation with additional terms to account for transient storage, lateral inflow, first-order decay, and sorption. This equation and the associated equations describing transient storage and sorption are solved using a Crank-Nicolson finite-difference solution. OTIS may be used in conjunction with data from field-scale tracer experiments to quantify the hydrologic parameters affecting solute transport. This application typically involves a trial-and-error approach wherein parameter estimates are adjusted to obtain an acceptable match between simulated and observed tracer concentrations. Additional applications include analyses of nonconservative solutes that are subject to sorption processes or first-order decay. OTIS-P, a modified version of OTIS, couples the solution of the governing equation with a nonlinear regression package. OTIS-P determines an optimal set of parameter estimates that minimize the squared differences between the simulated and observed concentrations, thereby automating the parameter estimation process. This report details the development and application of OTIS and OTIS-P. Sections of the report describe model theory, input/output specifications, sample applications, and installation instructions.

  17. An assembly model for simulation of large-scale ground water flow and transport.

    PubMed

    Huang, Junqi; Christ, John A; Goltz, Mark N

    2008-01-01

    When managing large-scale ground water contamination problems, it is often necessary to model flow and transport using finely discretized domains--for instance (1) to simulate flow and transport near a contamination source area or in the area where a remediation technology is being implemented; (2) to account for small-scale heterogeneities; (3) to represent ground water-surface water interactions; or (4) some combination of these scenarios. A model with a large domain and fine-grid resolution will need extensive computing resources. In this work, a domain decomposition-based assembly model implemented in a parallel computing environment is developed, which will allow efficient simulation of large-scale ground water flow and transport problems using domain-wide grid refinement. The method employs common ground water flow (MODFLOW) and transport (RT3D) simulators, enabling the solution of almost all commonly encountered ground water flow and transport problems. The basic approach partitions a large model domain into any number of subdomains. Parallel processors are used to solve the model equations within each subdomain. Schwarz iteration is applied to match the flow solution at the subdomain boundaries. For the transport model, an extended numerical array is implemented to permit the exchange of dispersive and advective flux information across subdomain boundaries. The model is verified using a conventional single-domain model. Model simulations demonstrate that the proposed model operated in a parallel computing environment can result in considerable savings in computer run times (between 50% and 80%) compared with conventional modeling approaches and may be used to simulate grid discretizations that were formerly intractable.

  18. An operator splitting algorithm for the three-dimensional advection-diffusion equation

    NASA Astrophysics Data System (ADS)

    Khan, Liaqat Ali; Liu, Philip L.-F.

    1998-09-01

    Operator splitting algorithms are frequently used for solving the advection-diffusion equation, especially to deal with advection dominated transport problems. In this paper an operator splitting algorithm for the three-dimensional advection-diffusion equation is presented. The algorithm represents a second-order-accurate adaptation of the Holly and Preissmann scheme for three-dimensional problems. The governing equation is split into an advection equation and a diffusion equation, and they are solved by a backward method of characteristics and a finite element method, respectively. The Hermite interpolation function is used for interpolation of concentration in the advection step. The spatial gradients of concentration in the Hermite interpolation are obtained by solving equations for concentration gradients in the advection step. To make the composite algorithm efficient, only three equations for first-order concentration derivatives are solved in the diffusion step of computation. The higher-order spatial concentration gradients, necessary to advance the solution in a computational cycle, are obtained by numerical differentiations based on the available information. The simulation characteristics and accuracy of the proposed algorithm are demonstrated by several advection dominated transport problems.

  19. Investigation of hurricane Ivan using the coupled ocean-atmosphere-wave-sediment transport (COAWST) model

    USGS Publications Warehouse

    Zambon, Joseph B.; He, Ruoying; Warner, John C.

    2014-01-01

    The coupled ocean–atmosphere–wave–sediment transport (COAWST) model is used to hindcast Hurricane Ivan (2004), an extremely intense tropical cyclone (TC) translating through the Gulf of Mexico. Sensitivity experiments with increasing complexity in ocean–atmosphere–wave coupled exchange processes are performed to assess the impacts of coupling on the predictions of the atmosphere, ocean, and wave environments during the occurrence of a TC. Modest improvement in track but significant improvement in intensity are found when using the fully atmosphere–ocean-wave coupled configuration versus uncoupled (e.g., standalone atmosphere, ocean, or wave) model simulations. Surface wave fields generated in the fully coupled configuration also demonstrates good agreement with in situ buoy measurements. Coupled and uncoupled model-simulated sea surface temperature (SST) fields are compared with both in situ and remote observations. Detailed heat budget analysis reveals that the mixed layer temperature cooling in the deep ocean (on the shelf) is caused primarily by advection (equally by advection and diffusion).

  20. BRYNTRN: A baryon transport model

    NASA Technical Reports Server (NTRS)

    Wilson, John W.; Townsend, Lawrence W.; Nealy, John E.; Chun, Sang Y.; Hong, B. S.; Buck, Warren W.; Lamkin, S. L.; Ganapol, Barry D.; Khan, Ferdous; Cucinotta, Francis A.

    1989-01-01

    The development of an interaction data base and a numerical solution to the transport of baryons through an arbitrary shield material based on a straight ahead approximation of the Boltzmann equation are described. The code is most accurate for continuous energy boundary values, but gives reasonable results for discrete spectra at the boundary using even a relatively coarse energy grid (30 points) and large spatial increments (1 cm in H2O). The resulting computer code is self-contained, efficient and ready to use. The code requires only a very small fraction of the computer resources required for Monte Carlo codes.

  1. Computational modeling of electrokinetic transport in random networks of micro-pores and nano-pores

    NASA Astrophysics Data System (ADS)

    Alizadeh, Shima; Mani, Ali

    2014-11-01

    A reduced order model has been developed to study the nonlinear electrokinetic behaviors emerging in the transport of ionic species through micro-scale and nano-scale porous media. In this approach a porous structure is modeled as a network of long and thin pores. By assuming transport equilibrium in the thin dimensions for each pore, a 1D transport equation is developed in the longitudinal direction covering a wide range of conditions including extreme limits of thick and thin electric double layers. This 1D model includes transport via diffusion, electromigration and wide range of advection mechanisms including pressure driven flow, electroosmosis, and diffusion osmosis. The area-averaged equations governing the axial transport from different pores are coupled at the pore intersections using the proper conservation laws. Moreover, an asymptotic treatment has been included in order to remove singularities in the limit of small concentration. The proposed method provides an efficient framework for insightful simulations of porous electrokinetic systems with applications in water desalination and energy storage. PhD student in Mechanical Engineering, Stanford University. She received her Master's degree in Mechanical Engineering from Stanford at 2013. Her research interests include CFD, high performance computing, and optimization.

  2. Stochastic model of radioiodine transport

    SciTech Connect

    Schwarz, G.; Hoffman, F.O.

    1980-01-01

    A research project has been underway at the Oak Ridge National Laboratory with the objective to evaluate dose assessment models and to determine the uncertainty associated with the model predictions. This has resulted in the application of methods to propagate uncertainties through models. Some techniques and results related to this problem are discussed.

  3. Hybrid Multiscale Finite Volume Method for Advection-Diffusion Equations Subject to Heterogeneous Reactive Boundary Conditions

    SciTech Connect

    Barajas-Solano, David A.; Tartakovsky, A. M.

    2016-10-13

    We present a hybrid scheme for the coupling of macro and microscale continuum models for reactive contaminant transport in fractured and porous media. The transport model considered is the advection-dispersion equation, subject to linear heterogeneous reactive boundary conditions. The Multiscale Finite Volume method (MsFV) is employed to define an approximation to the microscale concentration field defined in terms of macroscopic or \\emph{global} degrees of freedom, together with local interpolator and corrector functions capturing microscopic spatial variability. The macroscopic mass balance relations for the MsFV global degrees of freedom are coupled with the macroscopic model, resulting in a global problem for the simultaneous time-stepping of all macroscopic degrees of freedom throughout the domain. In order to perform the hybrid coupling, the micro and macroscale models are applied over overlapping subdomains of the simulation domain, with the overlap denoted as the handshake subdomain $\\Omega^{hs}$, over which continuity of concentration and transport fluxes between models is enforced. Continuity of concentration is enforced by posing a restriction relation between models over $\\Omega^{hs}$. Continuity of fluxes is enforced by prolongating the macroscopic model fluxes across the boundary of $\\Omega^{hs}$ to microscopic resolution. The microscopic interpolator and corrector functions are solutions to local microscopic advection-diffusion problems decoupled from the global degrees of freedom and from each other by virtue of the MsFV decoupling ansatz. The error introduced by the decoupling ansatz is reduced iteratively by the preconditioned GMRES algorithm, with the hybrid MsFV operator serving as the preconditioner.

  4. Toxic Alexandrium blooms in the western Gulf of Maine: The plume advection hypothesis revisited

    USGS Publications Warehouse

    Anderson, D.M.; Keafer, B.A.; Geyer, W.R.; Signell, R.P.; Loder, T.C.

    2005-01-01

    The plume advection hypothesis links blooms of the toxic dinoflagellate Alexandrium fundyense in the western Gulf of Maine (GOM) to a buoyant plume derived from river outflows. This hypothesis was examined with cruise and moored-instrument observations in 1993 when levels of paralytic shellfish poisoning (PSP) toxins were high, and in 1994 when toxicity was low. A coupled physical-biological model simulated hydrography and A. fundyense distributions. Initial A. fundyense populations were restricted to low-salinity nearshore waters near Casco Bay, but also occurred in higher salinity waters along the plume boundary. This suggests two sources of cells - those from shallow-water cyst populations and those transported to shore from offshore blooms in the eastern segment of the Maine coastal current (EMCC). Observations confirm the role of the plume in A. fundyense transport and growth. Downwelling-favorable winds in 1993 transported the plume and its cells rapidly alongshore, enhancing toxicity and propagating PSP to the south. In 1994, sustained upwelling moved the plume offshore, resulting in low toxicity in intertidal shellfish. A. fundyense blooms were likely nutrient limited, leading to low growth rates and moderate cell abundances. These observations and mechanisms were reproduced by coupled physical-biological model simulations. The plume advection hypothesis provides a viable explanation for outbreaks of PSP in the western GOM, but should be refined to include two sources for cells that populate the plume and two major pathways for transport: one within the low-salinity plume and another where A. fundyense cells originating in the EMCC are transported along the outer boundary of the plume front with the western segment of the Maine coastal current.

  5. Calculation of a residual mean meridional circulation for a zonal-mean tracer transport model: Revision 1

    SciTech Connect

    Choi, W.K.; Rotman, D.A.; Wuebbles, D.J.

    1995-01-01

    Because of their computational advantages, zonally-averaged chemical-radiative-transport models are widely used to investigate the distribution of chemical species and their change due to the anthropogenic chemicals in the lower and middle atmosphere. In general, the Lagrangian-mean formulation would be ideal to treat transport due to the zonal mean circulation and eddies. However, the Lagrangian formulation is difficult to use in practical applications. The most widely-used formulation for treating global atmospheric dynamics in two-dimensional models is the transformed Eulerian mean (TEM) equations. The residual mean meridional circulation (RMMC) in the TEM system is used to advect tracers. In this study, we describe possible solution techniques for obtaining the RMMC in the LLNL two-dimensional chemical-radiative-transport model. In the next section, the formulation will be described. In sections 3 and 4, possible solution procedures will be described for a diagnostic and prognostic case, respectively.

  6. Molecular model of the neural dopamine transporter

    NASA Astrophysics Data System (ADS)

    Ravna, Aina Westrheim; Sylte, Ingebrigt; Dahl, Svein G.

    2003-05-01

    The dopamine transporter (DAT) regulates the action of dopamine by reuptake of the neurotransmitter into presynaptic neurons, and is the main molecular target of amphetamines and cocaine. DAT and the Na+/H+ antiporter (NhaA) are secondary transporter proteins that carry small molecules across a cell membrane against a concentration gradient, using ion gradients as energy source. A 3-dimensional projection map of the E. coli NhaA has confirmed a topology of 12 membrane spanning domains, and was previously used to construct a 3-dimensional NhaA model with 12 trans-membrane α-helices (TMHs). The NhaA model, and site directed mutagenesis data on DAT, were used to construct a detailed 3-dimensional DAT model using interactive molecular graphics and empiric force field calculations. The model proposes a dopamine transport mechanism involving TMHs 1, 3, 4, 5, 7 and 11. Asp79, Tyr252 and Tyr274 were the primary cocaine binding residues. Binding of cocaine or its analogue, (-)-2β-carbomethoxy-3β-(4-fluorophenyl)tropane (CFT), seemed to lock the transporter in an inactive state, and thus inhibit dopamine transport. The present model may be used to design further experimental studies of the molecular structure and mechanisms of DAT and other secondary transporter proteins.

  7. Lattice Boltzmann simulation of solute transport in heterogeneous porous media with conduits to estimate macroscopic continuous time random walk model parameters

    SciTech Connect

    Anwar, S.; Cortis, A.; Sukop, M.

    2008-10-20

    Lattice Boltzmann models simulate solute transport in porous media traversed by conduits. Resulting solute breakthrough curves are fitted with Continuous Time Random Walk models. Porous media are simulated by damping flow inertia and, when the damping is large enough, a Darcy's Law solution instead of the Navier-Stokes solution normally provided by the lattice Boltzmann model is obtained. Anisotropic dispersion is incorporated using a direction-dependent relaxation time. Our particular interest is to simulate transport processes outside the applicability of the standard Advection-Dispersion Equation (ADE) including eddy mixing in conduits. The ADE fails to adequately fit any of these breakthrough curves.

  8. ANALYTICAL MODELING OF THE INFLUENCE OF DENITRIFYING SEDIMENTS ON NITRATE TRANSPORT IN AQUIFERS WITH SLOPING BEDS

    EPA Science Inventory

    Denitrification is a significant process for the removal of nitrate transported in groundwater drainage from agricultural watersheds. In this paper analytical solutions are developed for advective-reactive and nonpoint-source contaminant transport in a two-layer unconfined aquife...

  9. Reduced Dynamic Models in Epithelial Transport

    PubMed Central

    Hernández, Julio A.

    2013-01-01

    Most models developed to represent transport across epithelia assume that the cell interior constitutes a homogeneous compartment, characterized by a single concentration value of the transported species. This conception differs significantly from the current view, in which the cellular compartment is regarded as a highly crowded media of marked structural heterogeneity. Can the finding of relatively simple dynamic properties of transport processes in epithelia be compatible with this complex structural conception of the cell interior? The purpose of this work is to contribute with one simple theoretical approach to answer this question. For this, the techniques of model reduction are utilized to obtain a two-state reduced model from more complex linear models of transcellular transport with a larger number of intermediate states. In these complex models, each state corresponds to the solute concentration in an intermediate intracellular compartment. In addition, the numerical studies reveal that it is possible to approximate a general two-state model under conditions where strict reduction of the complex models cannot be performed. These results contribute with arguments to reconcile the current conception of the cell interior as a highly complex medium with the finding of relatively simple dynamic properties of transport across epithelial cells. PMID:23533397

  10. Colloid release and transport processes in natural and model porous media

    SciTech Connect

    Roy, S.B.; Dzombak, D.A.

    1995-12-01

    Colloidal particles present in porous media may be released and transported over significant distances when contacted with water at low ionic strength. An understanding of this process is of environmental interest because suspended colloidal particles in groundwater may enhance the subsurface transport of contaminants that are sorbed on their surfaces. This research focused on the processes of colloid release and transport in natural porous media of interest in contaminant transport, i.e., high permeability materials with low fines contents. Our objective in this study was to examine the mechanisms of colloid release and transport in a natural sand, and two model systems: latex particles attached on glass beads, and kaolinite particles attached on glass beads. For the appropriate electrolyte conditions, the release of attached colloids from all three porous media was found to be substantial. The total amount of colloids released depended upon the electrolyte composition and concentration. Column effluent data could be described with an advective-dispersive transport equation for colloidal particles with first-order terms for colloid release and deposition rates, by changing the mass of colloids available for release at each electrolyte concentrations.

  11. Model aids cuttings transport prediction

    SciTech Connect

    Gavignet, A.A. ); Sobey, I.J. )

    1989-09-01

    Drilling of highly deviated wells can be complicated by the formation of a thick bed of cuttings at low flow rates. The model proposed in this paper shows what mechanisms control the thickness of such a bed, and the model predictions are compared with experimental results.

  12. Simulation of advective flow under steady-state and transient recharge conditions, Camp Edwards, Massachusetts Military Reservation, Cape Cod, Massachusetts

    USGS Publications Warehouse

    Walter, Donald A.; Masterson, John P.

    2003-01-01

    The U.S. Geological Survey has developed several ground-water models in support of an investigation of ground-water contamination being conducted by the Army National Guard Bureau at Camp Edwards, Massachusetts Military Reservation on western Cape Cod, Massachusetts. Regional and subregional steady-state models and regional transient models were used to (1) improve understanding of the hydrologic system, (2) simulate advective transport of contaminants, (3) delineate recharge areas to municipal wells, and (4) evaluate how model discretization and time-varying recharge affect simulation results. A water-table mound dominates ground-water-flow patterns. Near the top of the mound, which is within Camp Edwards, hydraulic gradients are nearly vertically downward and horizontal gradients are small. In downgradient areas that are further from the top of the water-table mound, the ratio of horizontal to vertical gradients is larger and horizontal flow predominates. The steady-state regional model adequately simulates advective transport in some areas of the aquifer; however, simulation of ground-water flow in areas with local hydrologic boundaries, such as ponds, requires more finely discretized subregional models. Subregional models also are needed to delineate recharge areas to municipal wells that are inadequately represented in the regional model or are near other pumped wells. Long-term changes in recharge rates affect hydraulic heads in the aquifer and shift the position of the top of the water-table mound. Hydraulic-gradient directions do not change over time in downgradient areas, whereas they do change substantially with temporal changes in recharge near the top of the water-table mound. The assumption of steady-state hydraulic conditions is valid in downgradient area, where advective transport paths change little over time. In areas closer to the top of the water-table mound, advective transport paths change as a function of time, transient and steady-state paths

  13. Inverse Reactive Transport Simulator (Inverts): An Inverse Model for Contaminant Transport with Nonlinear Adsorption and Source Terms

    SciTech Connect

    McGrail, B. Peter

    2001-10-31

    A numerically based simulator was developed to assist in the interpretation of complex laboratory experiments examining transport processes of chemical and biological contaminants subject to nonlinear adsorption and/or source terms. The inversion is performed with any of three nonlinear regression methods, Marquardt-Levenberg, conjugate gradient, or quasi-Newton. The governing equations for the problem are solved by the method of finite-differences including any combination of three boundary conditions: (1) Dirichlet, (2) Neumann, and (3) Cauchy. The dispersive terms in the transport equations were solved using the second-order accurate in time and space Crank-Nicolson scheme, while the advective terms were handled using a third-order in time and space, total variation diminishing (TVD) scheme that damps spurious oscillations around sharp concentration fronts. The numerical algorithms were implemented in the computer code INVERTS, which runs on any standard personal computer. Apart from a comprehensive set of test problems, INVERTS was also used to model the elution of a nonradioactive tracer, {sup 185}Re, in a pressurized unsaturated flow (PUF) experiment with a simulated waste glass for low-activity waste immobilization. Interpretation of the elution profile was best described with a nonlinear kinetic model for adsorption.

  14. Transport pathways of carbon monoxide in the Asian summer monsoon diagnosed from Model of Ozone and Related Tracers (MOZART)

    NASA Astrophysics Data System (ADS)

    Park, Mijeong; Randel, William J.; Emmons, Louisa K.; Livesey, Nathaniel J.

    2009-04-01

    Satellite observations of tropospheric chemical constituents (such as carbon monoxide, CO) reveal a persistent maximum in the upper troposphere-lower stratosphere (UTLS) associated with the Asian summer monsoon anticyclone. Diagnostic studies suggest that the strong anticyclonic circulation acts to confine air masses, but the sources of pollution and transport pathways to altitudes near the tropopause are the subject of debate. Here we use the Model for Ozone and Related Tracers 4 (MOZART-4) global chemistry transport model, driven by analyzed meteorological fields, to study the source and transport of CO in the Asian monsoon circulation. A MOZART-4 simulation for one summer is performed, and results are compared with satellite observations of CO from the Aura Microwave Limb Sounder and the Atmospheric Chemistry Experiment Fourier Transform Spectrometer. Overall, good agreement is found between the modeled and observed CO in the UTLS, promoting confidence in the model simulation. The model results are then analyzed to understand the sources and transport pathways of CO in the Asian monsoon region, and within the anticyclone in particular. The results show that CO is transported upward by monsoon deep convection, with the main surface sources from India and Southeast Asia. The uppermost altitude of the convective transport is ˜12 km, near the level of main deep convective outflow, and much of the CO is then advected in the upper troposphere northeastward across the Pacific Ocean and southwestward with the cross-equatorial Hadley flow. However, some of the CO is also advected vertically to altitudes near the tropopause (˜16 km) by the large-scale upward circulation on the eastern side of the anticyclone, and this air then becomes trapped within the anticyclone (to the west of the convection, extending to the Middle East). Within the anticyclone, the modeled CO shows a relative maximum near 15 km, in good agreement with observations.

  15. Modeling water flow and pesticide transport at five experimental sites in Hawaii, USA

    NASA Astrophysics Data System (ADS)

    Dusek, Jaromir; Ray, Chittaranjan; Dohnal, Michal; Vogel, Tomas

    2010-05-01

    The field pesticide leaching experiment, conducted at five different sites in Hawaii, USA was subject to numerical modeling. The one-dimensional model, based on Richards equation for water flow and the advection-dispersion equation for solute transport was used. At each site, pressure head data and chemical concentration profiles were measured during a 16-week study period. Hydraulic parameters governing the flow of water in soils were determined independently in the laboratory; however inverse modeling was employed to reduce the differences between measured and simulated pressure heads. Laboratory-measured values of sorption distribution coefficient and half-life were used as input for the model. In an alternative scenario, the reactive transport parameters were also adjusted for improved fit with measured concentration profiles. For some pesticides, reasonable agreement between data and model predictions was difficult to obtain even for scenarios based on inverse modeling of soil water and transport parameters. The observed chemical profiles in the soil did not provide sufficient information needed for predicting the mass flux of pesticides toward the water table. Thus, for pesticides showing good match with measured concentration profiles the mass flux leaving the soil profile was evaluated by the model.

  16. Numerical implementation of a crystal plasticity model with dislocation transport for high strain rate applications

    NASA Astrophysics Data System (ADS)

    Mayeur, Jason R.; Mourad, Hashem M.; Luscher, Darby J.; Hunter, Abigail; Kenamond, Mark A.

    2016-05-01

    This paper details a numerical implementation of a single crystal plasticity model with dislocation transport for high strain rate applications. Our primary motivation for developing the model is to study the influence of dislocation transport and conservation on the mesoscale response of metallic crystals under extreme thermo-mechanical loading conditions (e.g. shocks). To this end we have developed a single crystal plasticity theory (Luscher et al (2015)) that incorporates finite deformation kinematics, internal stress fields caused by the presence of geometrically necessary dislocation gradients, advection equations to model dislocation density transport and conservation, and constitutive equations appropriate for shock loading (equation of state, drag-limited dislocation velocity, etc). In the following, we outline a coupled finite element-finite volume framework for implementing the model physics, and demonstrate its capabilities in simulating the response of a [1 0 0] copper single crystal during a plate impact test. Additionally, we explore the effect of varying certain model parameters (e.g. mesh density, finite volume update scheme) on the simulation results. Our results demonstrate that the model performs as intended and establishes a baseline of understanding that can be leveraged as we extend the model to incorporate additional and/or refined physics and move toward a multi-dimensional implementation.

  17. A Comparison of Mass Transport Models for Evaluating U(VI) Desorption at the Decimeter Scale

    NASA Astrophysics Data System (ADS)

    Kannappan, R.; Hay, M. B.; Miller, A. W.; Kohler, M.; Rodriguez, D.; Curtis, G. P.

    2013-12-01

    Uranium (VI) is a contaminant of concern in aquifers at many former uranium mills and processing facilities. Estimating the time-scale for desorption is important for addressing the long term risk of groundwater contamination. Determination of the rate limiting processes in desorption requires the evaluation of hydrodynamic and chemical conditions at a site along with the nature of the processes themselves. This research compares different mass transport models against the results of a decimeter scale laboratory desorption experiment. Different grain size fractions of contaminated sediments from the Naturita Uranium Mill Tailings Remediation Act site were used to create porous media systems with known physical and chemical heterogeneity. The goal is to better understand the mass transport limitations associated with uranium desorption. Two dimensional reactive transport models with no immobile zones, a single immobile zone and multiple immobile zones with a distribution of rate coefficients were compared with observations at selected monitoring locations in the domain and with the flux-averaged concentrations in the effluent. The artificial heterogeneity provided regions with a contrast of desorption rates relative to the adjacent advective rates; flow interruption events showed variable extents of the commonly observed concentration rebound indicative of mass transfer out of immobile zones which were generally reproduced by the model. A comparison of the alternative model results will be used to determine the level of complexity necessary to accurately represent mass transport in the individual breakthrough curves at sampling ports and in the integrated breakthrough curve for the entire experiment.

  18. 3D modelling of transport, deposition and resuspension of highway deposited sediments in wet detention ponds.

    PubMed

    Bentzen, T R

    2010-01-01

    The paper presents results from an experimental and numerical study of flows and transport of primarily particle bound pollutants in highway wet detention ponds. The study presented here is part of a general investigation on road runoff and pollution in respect to wet detention ponds. The objective is to evaluate the quality of long term simulation based on historical rains series of the pollutant discharges from roads and highways. A three-dimensional hydrodynamic and mud transport model is used for the investigation. The transport model has been calibrated and validated on e.g. experiments in a 30 m long concrete channel with width of 0.8 m and a water depth of approximately 0.8 m and in circular flume experiments in order to reproduce near-bed specific processes such as resuspension and consolidation. With a fairly good agreement with measurements, modelling of hydrodynamics, transport of dissolved pollutants and particles in wet detention ponds is possible with application of a three dimensional RANS model and the advection/dispersion equation taken physical phenomena like wind, waves, deposition, erosion and consolidation of the bottom sediment into account.

  19. A Generalized Model for Transport of Contaminants in Soil by Electric Fields

    PubMed Central

    Paz-Garcia, Juan M.; Baek, Kitae; Alshawabkeh, Iyad D.; Alshawabkeh, Akram N.

    2012-01-01

    A generalized model applicable to soils contaminated with multiple species under enhanced boundary conditions during treatment by electric fields is presented. The partial differential equations describing species transport are developed by applying the law of mass conservation to their fluxes. Transport, due to migration, advection and diffusion, of each aqueous component and complex species are combined to produce one partial differential equation hat describes transport of the total analytical concentrations of component species which are the primary dependent variables. This transport couples with geochemical reactions such as aqueous equilibrium, sorption, precipitation and dissolution. The enhanced model is used to simulate electrokinetic cleanup of lead and copper contaminants at an Army Firing Range. Acid enhancement is achieved by the use of adipic acid to neutralize the basic front produced for the cathode electrochemical reaction. The model is able to simulate enhanced application of the process by modifying the boundary conditions. The model showed that kinetics of geochemical reactions, such as metals dissolution/leaching and redox reactions might be significant for realistic prediction of enhanced electrokinetic extraction of metals in real world applications. PMID:22242884

  20. Computational modeling of ion transport through nanopores.

    PubMed

    Modi, Niraj; Winterhalter, Mathias; Kleinekathöfer, Ulrich

    2012-10-21

    Nanoscale pores are ubiquitous in biological systems while artificial nanopores are being fabricated for an increasing number of applications. Biological pores are responsible for the transport of various ions and substrates between the different compartments of biological systems separated by membranes while artificial pores are aimed at emulating such transport properties. As an experimental method, electrophysiology has proven to be an important nano-analytical tool for the study of substrate transport through nanopores utilizing ion current measurements as a probe for the detection. Independent of the pore type, i.e., biological or synthetic, and objective of the study, i.e., to model cellular processes of ion transport or electrophysiological experiments, it has become increasingly important to understand the dynamics of ions in nanoscale confinements. To this end, numerical simulations have established themselves as an indispensable tool to decipher ion transport processes through biological as well as artificial nanopores. This article provides an overview of different theoretical and computational methods to study ion transport in general and to calculate ion conductance in particular. Potential new improvements in the existing methods and their applications are highlighted wherever applicable. Moreover, representative examples are given describing the ion transport through biological and synthetic nanopores as well as the high selectivity of ion channels. Special emphasis is placed on the usage of molecular dynamics simulations which already have demonstrated their potential to unravel ion transport properties at an atomic level.

  1. Modeling gas transport in the Martian subsurface

    NASA Astrophysics Data System (ADS)

    Gloesener, Elodie; Karatekin, Özgür; Dehant, Véronique

    2015-04-01

    Modeling gas transport through Martian subsurface and outgassing processes is essential in the study of atmospheric evolution of Mars. We present an overview of gas transport in Martian soil focusing on water vapor and methane diffusion to explain the recent observations of methane in Martian atmosphere with a diffusive transport model. The range of parameters that have the largest effect on transport in Martian conditions is investigated. Among the possible sources of methane, clathrate hydrates destabilization is one potential mechanism. Hydrate stability zone in subsurface is also investigated. In 2016, ExoMars Trace Gas Orbiter (TGO) will have the capabilities to detect and characterize trace gases in Martian atmosphere and will bring additional information to validate the different possible outgassing scenarios.

  2. Solution of the advection-dispersion equation: Continuous load of finite duration

    USGS Publications Warehouse

    Runkel, R.L.

    1996-01-01

    Field studies of solute fate and transport in streams and rivers often involve an. experimental release of solutes at an upstream boundary for a finite period of time. A review of several standard references on surface-water-quality modeling indicates that the analytical solution to the constant-parameter advection-dispersion equation for this type of boundary condition has been generally overlooked. Here an exact analytical solution that considers a continuous load of unite duration is compared to an approximate analytical solution presented elsewhere. Results indicate that the exact analytical solution should be used for verification of numerical solutions and other solute-transport problems wherein a high level of accuracy is required. ?? ASCE.

  3. Invasions in heterogeneous habitats in the presence of advection.

    PubMed

    Vergni, Davide; Iannaccone, Sandro; Berti, Stefano; Cencini, Massimo

    2012-05-21

    We investigate invasions from a biological reservoir to an initially empty, heterogeneous habitat in the presence of advection. The habitat consists of a periodic alternation of favorable and unfavorable patches. In the latter the population dies at fixed rate. In the former it grows either with the logistic or with an Allee effect type dynamics, where the population has to overcome a threshold to grow. We study the conditions for successful invasions and the speed of the invasion process, which is numerically and analytically investigated in several limits. Generically advection enhances the downstream invasion speed but decreases the population size of the invading species, and can even inhibit the invasion process. Remarkably, however, the rate of population increase, which quantifies the invasion efficiency, is maximized by an optimal advection velocity. In models with Allee effect, differently from the logistic case, above a critical unfavorable patch size the population localizes in a favorable patch, being unable to invade the habitat. However, we show that advection, when intense enough, may activate the invasion process.

  4. Advection, dispersion, and filtration of fine particles within emergent vegetation of the Florida Everglades

    USGS Publications Warehouse

    Huang, Y.H.; Saiers, J.E.; Harvey, J.W.; Noe, G.B.; Mylon, S.

    2008-01-01

    The movement of particulate matter within wetland surface waters affects nutrient cycling, contaminant mobility, and the evolution of the wetland landscape. Despite the importance of particle transport in influencing wetland form and function, there are few data sets that illuminate, in a quantitative way, the transport behavior of particulate matter within surface waters containing emergent vegetation. We report observations from experiments on the transport of 1 ??m latex microspheres at a wetland field site located in Water Conservation Area 3A of the Florida Everglades. The experiments involved line source injections of particles inside two 4.8-m-long surface water flumes constructed within a transition zone between an Eleocharis slough and Cladium jamaicense ridge and within a Cladium jamaicense ridge. We compared the measurements of particle transport to calculations of two-dimensional advection-dispersion model that accounted for a linear increase in water velocities with elevation above the ground surface. The results of this analysis revealed that particle spreading by longitudinal and vertical dispersion was substantially greater in the ridge than within the transition zone and that particle capture by aquatic vegetation lowered surface water particle concentrations and, at least for the timescale of our experiments, could be represented as an irreversible, first-order kinetics process. We found generally good agreement between our field-based estimates of particle dispersion and water velocity and estimates determined from published theory, suggesting that the advective-dispersive transport of particulate matter within complex wetland environments can be approximated on the basis of measurable properties of the flow and aquatic vegetation. Copyright 2008 by the American Geophysical Union.

  5. The Community Sediment Transport Modeling System

    DTIC Science & Technology

    2008-01-01

    addition to wave processes, the model includes the influence of flocculation, hindered settling, rheology, and turbulence -suppression by stratification...The extensive upwelling event occurred in March 2002 is better reproduced with evident appearance of submesoscale spiral eddies all over the inner...THE COMMUNITY SEDIMENT TRANSPORT MODELING SYSTEM W. Rockwell Geyer Woods Hole Oceanographic Institution MS 11, Woods Hole, MA 02543 phone

  6. Clinton River Sediment Transport Modeling Study

    EPA Pesticide Factsheets

    The U.S. ACE develops sediment transport models for tributaries to the Great Lakes that discharge to AOCs. The models developed help State and local agencies to evaluate better ways for soil conservation and non-point source pollution prevention.

  7. Coping with model error in variational data assimilation using optimal mass transport

    NASA Astrophysics Data System (ADS)

    Ning, Lipeng; Carli, Francesca P.; Ebtehaj, Ardeshir Mohammad; Foufoula-Georgiou, Efi; Georgiou, Tryphon T.

    2014-07-01

    Classical variational data assimilation methods address the problem of optimally combining model predictions with observations in the presence of zero-mean Gaussian random errors. However, in many natural systems, uncertainty in model structure and/or model parameters often results in systematic errors or biases. Prior knowledge about such systematic model error for parametric removal is not always feasible in practice, limiting the efficient use of observations for improved prediction. The main contribution of this work is to advocate the relevance of transportation metrics for quantifying nonrandom model error in variational data assimilation for nonnegative natural states and fluxes. Transportation metrics (also known as Wasserstein metrics) originate in the theory of Optimal Mass Transport (OMT) and provide a nonparametric way to compare distributions which is natural in the sense that it penalizes mismatch in the values and relative position of "masses" in the two distributions. We demonstrate the promise of the proposed methodology using 1-D and 2-D advection-diffusion dynamics with systematic error in the velocity and diffusivity parameters. Moreover, we combine this methodology with additional regularization functionals, such as the ℓ1-norm of the state in a properly chosen domain, to incorporate both model error and potential prior information in the presence of sparsity or sharp fronts in the underlying state of interest.

  8. Models for Turbulent Transport Processes.

    ERIC Educational Resources Information Center

    Hill, James C.

    1979-01-01

    Since the statistical theories of turbulence that have developed over the last twenty or thirty years are too abstract and unreliable to be of much use to chemical engineers, this paper introduces the techniques of single point models and suggests some areas of needed research. (BB)

  9. Modeling Vapor and Heat Transport on Io

    NASA Astrophysics Data System (ADS)

    Allen, D. R.; Howell, R. R.

    2012-12-01

    Loki patera, a large, active volcanic depression on Jupiter's innermost Galilean moon Io, shows evidence of sulfur transport and exhibits temperatures that are consistently lower than many other volcanoes on Io. Galileo images of Loki reveal red sulfur deposits exterior to the patera that extend approximately 40 km from the patera's edge. Voyager images show light deposits, colloquially known as sulfur bergs, scattered across the patera floor that range from 3.5 km to 5 km in diameter. In addition, temperature profiles running north to south across the patera vary by only a few degrees and are difficult to explain with current thermal models, which don't include the role of volatiles such as sulfur. We are investigating the role sulfur plays in producing the features seen in images of Loki and in modifying the temperatures at Loki. We used the atmospheric models of Ingersoll (1989) and Moreno et al. (1991) for SO2 transport on Io as a starting point for our own sulfur transport models. We also compared the length scales of deposition predicted by our models and Moreno's models to the morphology and features seen in Galileo and Voyager images. In one case, Ingersoll modeled the sublimation of SO2 from a hot, higher pressure side which moves in one dimension and is deposited on a cold, lower pressure side. Using this case as a starting point, we adapted it for temperatures and pressures appropriate for S8 transport. We also converted his equations to consider the radial expansion of S8 from a point source, which we compared to the models of Moreno et al. (1991). We solved the hot side-cold side Ingersoll adapted model both analytically and numerically and obtained horizontal length scales of sulfur deposition consistent with the red deposits. We scaled the horizontal lengths of SO2 deposition predicted by Moreno's numerical models for S8 and obtained sulfur deposition lengths consistent with the light deposits. In contrast, our radial expansion model gave horizontal

  10. World Energy Projection System Plus Model Documentation: Transportation Model

    EIA Publications

    2011-01-01

    This report documents the objectives, analytical approach and development of the World Energy Projection System Plus (WEPS ) International Transportation model. It also catalogues and describes critical assumptions, computational methodology, parameter estimation techniques, and model source code.

  11. EBS Radionuclide Transport Abstraction

    SciTech Connect

    J.D. Schreiber

    2005-08-25

    advective transport and diffusive transport from a breached waste package. Advective transport occurs when radionuclides that are dissolved or sorbed onto colloids (or both) are carried from the waste package by the portion of the seepage flux that passes through waste package breaches. Diffusive transport occurs as a result of a gradient in radionuclide concentration and may take place while advective transport is also occurring, as well as when no advective transport is occurring. Diffusive transport is addressed in detail because it is the sole means of transport when there is no flow through a waste package, which may dominate during the regulatory compliance period in the nominal and seismic scenarios. The advective transport rate, when it occurs, is generally greater than the diffusive transport rate. Colloid-facilitated advective and diffusive transport is also modeled and is presented in detail in Appendix B of this report.

  12. A Model for the Transport of Sea-Spray Aerosols in the Coastal Zone

    NASA Astrophysics Data System (ADS)

    Piazzola, J.; Tedeschi, G.; Demoisson, A.

    2015-05-01

    We study the dynamics of sea-spray particles in the coastal region of La Reunion Island on the basis of numerical simulations using the transport aerosol model MACMod (Marine Aerosol Concentration Model) and a survey of the aerosol size distributions measured at four locations at two different heights in the north-west part of the island. This allows evaluation of the performance of our model in case of pure marine air masses with implementation of accurate boundary conditions. First of all, an estimate of the aerosol concentration at 10-m height at the upwind boundary of the calculation domain is obtained using a revisited version of the MEDEX (Mediterranean Extinction) model. Estimates of the vertical profile of aerosol concentrations are then provided using aerosol data obtained at two different heights at the upwind boundary of the calculation domain. A parametrization of the vertical profiles of aerosol concentrations for maritime environment is proposed. The results are then compared to the vertical profiles of 0.532 m aerosol particle extinction coefficient obtained from lidar data provided by the Cloud-Aerosol LIdar with Orthogonal Polarization (CALIOP) and also to the data provided by the Aerosol Robotic Network (AERONET). This allows validation of the complete vertical profiles in the mixed layer and shows the validity of satellite data for determination of the vertical profiles. Two kinds of simulation were made: one without a particle advection flux at the upwind boundary of the numerical domain, whereas the second simulation was made with a particle advection flux. In the first case, the influence of the distance to the shoreline on the local sea-spray dynamics is investigated. In the second set of simulation, the particles issued from the local production in the surf zone near the shoreline are mixed with aerosols advected from the remote ocean. A good agreement between the model calculations using our boundary conditions and the data was found. The

  13. Evolution and Advection of Solar Mesogranulation

    DTIC Science & Technology

    1992-03-01

    unprecedented clarity. We see that the supergranules, which are known to carry along (advect) the granules with their convective motion, also advect...I Solar mesogranulation, Solar observations, Solar super- 2 granulation 16. PRICE COCE 1i7. SECJ-3T LSiIATO 8 EUITY CLASSIFICA ION 19. SECURITY CLAS...mo~iesý sho~ed that granules are adl~ectedl b• Richard Muller*, Hers& Auffret*, Thierry Roudiert, the larger-scale consectie flowss. and thu, could

  14. Dynamic typology of hydrothermal systems: competing effects of advection, dispersion and reactivity

    NASA Astrophysics Data System (ADS)

    Dolejs, David

    2016-04-01

    internal gradients and reactions in these systems are largely insensitive to the dynamics of the fluid flow. The time-intergrated fluid flux cannot be estimated from the petrological record and, in the limiting case, the net fluid flux can be zero (stagnant system in a porosity trap). This mechanism may be characteristic for Alpine-style vein assemblages and segregations in metamorphic terrains, where dissolution-reprecipitation is most likely assisted by transient gradients in stress field. Advection-dominated systems are characterized by a limited extent of chemical transport by dispersion with respect to interconnected size of the system. Progress of the alteration reactions in these systems is controlled independently by internal gradient(s) as the fluid moves through the mineralization site and magnitude of disequilibrium between the fluid and the host rock at the inflow. When the fluid flow rates remain low (e.g., dispersed metamorphic devolatilization), steady gradients along the fluid flow path exert the principal control, as commonly incorporated in the transport theory (Dolejš and Manning 2010, Ague 2014). When the fluid flow is rapid, the disequilibrium between the fluid and the host rock dictates the reaction efficiency, and the transport theory based on local equilibrium tends to significantly overestimate the net fluid flux. Advection-dominated systems with variable flow rates comprise a wide range of porosity- and fracture-controlled hydrothermal systems in intrusive and volcanic settings. With furter increase in the fluid flow rate, the advection-dominated systems evolved into reaction-constrained behavior. The mineral reaction progress is generally smaller, and the time-integrated fluid fluxes were likely much larger than petrologically estimated. These model examples illustrate that a functional description and classification of hydrothermal systems can address the causal relationships between length scales of solute (metal) sources and accumulations

  15. CASCADER: An M-chain gas-phase radionuclide transport and fate model. Volume 4 -- Users guide to CASCADR9

    SciTech Connect

    Cawlfield, D.E.; Emer, D.F.; Lindstrom, F.T.; Shott, G.J.

    1993-09-01

    Chemicals and radionuclides move either in the gas-phase, liquid-phase, or both phases in soils. They may be acted upon by either biological or abiotic processes through advection and/or dispersion. Additionally during the transport of parent and daughter radionuclides in soil, radionuclide decay may occur. This version of CASCADER called CASCADR9 starts with the concepts presented in volumes one and three of this series. For a proper understanding of how the model works, the reader should read volume one first. Also presented in this volume is a set of realistic scenarios for buried sources of radon gas, and the input and output file structure for CASCADER9.

  16. Modeling Transport of Viruses in Fractured Rock

    NASA Astrophysics Data System (ADS)

    Sleep, B. E.; Mondal, P. K.

    2011-12-01

    Fractured rock aquifers are frequently used for water supply for human consumption. In many instances the fractured rock aquifers are vulnerable to contamination by pathogens, including viruses, due to co-location of on-site septic systems, wastewater discharges, biosolids and agricultural activities. Approximately half of the illnesses associated with groundwater consumption in the Unites States have been attributed to viral contamination. A number of these cases have been related to transport of viruses from septic systems to drinking water wells. Despite the potential for rapid transport of viruses through rock fractures to drinking water wells, the understanding of virus transport in fractured rock is limited. In particular, the impacts of virus size, fracture aperture variability and roughness, matrix porosity, groundwater velocity, and geochemical conditions have not been well studied. In this study, a multidimensional model for virus transport in variable aperture fractures is presented. The model is applied to laboratory experiments on transport of virus-sized latex microspheres (0.02 and 0.2 microns) and bacteriophages (MS2 and PR772) in artificially fractured dolomite rocks. In these experiments significant impacts of particle size, fracture characteristics, groundwater velocity, and geochemistry were observed. Given the variability in aperture distribution and associated spatial variation in groundwater flow field, one-dimensional models were not suitable for a comprehensive evaluation of the mechanisms governing the microsphere and bacteriophage transport. Various relationships for virus retention (attachment and detachment) are evaluated to provide insight into the governing processes in virus transport in fractured rock. In addition, the role of virus size, fracture aperture variability, fracture roughness, fracture surface charge, matrix porosity, groundwater velocity, and ionic strength in virus transport are evaluated. Scale-up to the field is

  17. A high order characteristic discontinuous Galerkin scheme for advection on unstructured meshes

    NASA Astrophysics Data System (ADS)

    Lee, D.; Lowrie, R.; Petersen, M.; Ringler, T.; Hecht, M.

    2016-11-01

    A new characteristic discontinuous Galerkin (CDG) advection scheme is presented. In contrast to standard discontinuous Galerkin schemes, the test functions themselves follow characteristics in order to ensure conservation and the edges of each element are also traced backwards along characteristics in order to create a swept region, which is integrated in order to determine the mass flux across the edge. Both the accuracy and performance of the scheme are greatly improved by the use of large Courant-Friedrichs-Lewy numbers for a shear flow test case and the scheme is shown to scale sublinearly with the number of tracers being advected, outperforming a standard flux corrected transport scheme for 10 or more tracers with a linear basis. Moreover the CDG scheme may be run to arbitrarily high order spatial accuracy and on unstructured grids, and is shown to give the correct order of error convergence for piecewise linear and quadratic bases on regular quadrilateral and hexahedral planar grids. Using a modal Taylor series basis, the scheme may be made monotone while preserving conservation with the use of a standard slope limiter, although this reduces the formal accuracy of the scheme to first order. The second order scheme is roughly as accurate as the incremental remap scheme with nonlocal gradient reconstruction at half the horizontal resolution. The scheme is being developed for implementation within the Model for Prediction Across Scales (MPAS) Ocean model, an unstructured grid finite volume ocean model.

  18. Space-fractional advection-dispersion equations by the Kansa method

    NASA Astrophysics Data System (ADS)

    Pang, Guofei; Chen, Wen; Fu, Zhuojia

    2015-07-01

    The paper makes the first attempt at applying the Kansa method, a radial basis function meshless collocation method, to the space-fractional advection-dispersion equations, which have recently been observed to accurately describe solute transport in a variety of field and lab experiments characterized by occasional large jumps with fewer parameters than the classical models of integer-order derivative. However, because of non-local property of integro-differential operator of space-fractional derivative, numerical solution of these novel models is very challenging and little has been reported in literature. It is stressed that local approximation techniques such as the finite element and finite difference methods lose their sparse discretization matrix due to this non-local property. Thus, the global methods appear to have certain advantages in numerical simulation of these non-local models because of their high accuracy and smaller size resultant matrix equation. Compared with the finite difference method, popular in the solution of fractional equations, the Kansa method is a recent meshless global technique and is promising for high-dimensional irregular domain problems. In this study, the resultant matrix of the Kansa method is accurately calculated by the Gauss-Jacobi quadrature rule. Numerical results show that the Kansa method is highly accurate and computationally efficient for space-fractional advection-dispersion problems.

  19. DAC 22 High Speed Civil Transport Model

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Between tests, NASA research engineer Dave Hahne inspects a tenth-scale model of a supersonic transport model in the 30- by 60-Foot Tunnel at NASA Langley Research Center, Hampton, Virginia. The model is being used in support of NASA's High-Speed Research (HSR) program. Langley researchers are applying advance aerodynamic design methods to develop a wing leading-edge flap system which significantly improves low-speed fuel efficiency and reduces noise generated during takeoff operation. Langley is NASA's lead center for the agency's HSR program, aimed at developing technology to help U.S. industry compete in the rapidly expanding trans-oceanic transport market. A U.S. high-speed civil transport is expected to fly in about the year 2010. As envisioned, it would fly 300 passengers across the Pacific in about four hours at Mach 2.4 (approximately 1,600 mph/1950 kph) for a modest increase over business class fares.

  20. Band transport model for discotic liquid crystals

    NASA Astrophysics Data System (ADS)

    Lever, L. J.; Kelsall, R. W.; Bushby, R. J.

    2005-07-01

    A theoretical model is presented for charge transport in discotic liquid crystals in which a charge is delocalized over more than one lattice site. As such, charge transport is via a banded conduction process in a narrow bandwidth system and takes place over coherent lengths of a few molecules. The coherent lengths are disrupted by the geometrical disorder of the system and are treated as being terminated by quantum tunnel barriers. The transmission probabilities at these barriers have been calculated as a function of the charge carrier energy. Phononic interactions are also considered and the charge carrier scattering rates are calculated for intermolecular and intramolecular vibrations. The results of the calculations have been used to develop a Monte Carlo simulation of the charge transport model. Simulated data are presented and used to discuss the nature of the tunnel barriers required to reproduce experimental data. We find that the model successfully reproduces experimental time of flight data including temperature dependence.

  1. Turbulent Transport In Global Models of Magnetized Accretion Disks

    NASA Astrophysics Data System (ADS)

    Sorathia, Kareem

    of local models is predicated on the assumption that these models accurately capture the dynamics of a small patch of a global astrophysical disk. This assumption is tested in detail through the study of local regions of global simulations. To reach resolutions comparable to those used in local simulations an orbital advection algorithm, a semi-Lagrangian reformulation of the fluid equations, is used which allows an order of magnitude increase in computational efficiency. It is found that the turbulence in global simulations agrees at intermediate- and small-scales with local models and that the presence of magnetic flux stimulates angular momentum transport in global simulations in a similar manner to that observed for local ones. However, the importance of this flux-stress connection is shown to cast doubt on the validity of local models due to their inability to accurately capture the temporal evolution of the magnetic flux seen in global simulations. The use of orbital advection allows the ability to probe previously-inaccessible resolutions in global simulations and is the basis for a rigorous resolution study presented here. Included are the results of a study utilizing a series of global simulations of varying resolutions and initial magnetic field topologies where a collection of proposed metrics of numerical convergence are explored. The resolution constraints necessary to establish numerical convergence of astrophysically-important measurements are presented along with evidence suggesting that the use of proper azimuthal resolution, while computationally-demanding, is vital to achieving convergence. The majority of the proposed metrics are found to be useful diagnostics of MRI-driven turbulence, however they suffer as metrics of convergence due to their dependence on the initial magnetic field topology. In contrast to this, the magnetic tilt angle, a measure of the planar anisotropy of the magnetic field, is found to be a powerful tool for diagnosing

  2. Stratospheric Transport Times From Observations and Models

    NASA Astrophysics Data System (ADS)

    Hoor, P. M.; Lelieveld, J.; Boenisch, H.; Joeckel, P.; Steil, B.; Bruehl, C.; Strahan, S.

    2007-12-01

    Transport time scales in the stratosphere are crucial to understand and calculate the effects of chemical active species on stratospheric chemistry. In general CO2 or SF6 have been used to calculate mean ages of air in the stratosphere, whereas shorter lived trace gases like CO are used to investigate cross tropopause transport and mixing on short time-scales close to the tropopause. Besides mean ages and their assocated mean trace gas mixing ratios at a given point in the atmosphere other quantities of the trace gas distributions can be used to constrain stratospheric transport times, such as variability and slope. In particular the younger part of the age spectrum needs to be constrained since it determines the extent to which shorter lived compounds can be transported into the stratosphere. We investigate transport times in the stratosphere based on observations of CO, N2O and CO2 and test a new approach to deduce transport times. For that purpose we compare observations from the ER-2 and other platforms. The approach is applied to global models (ECHAM5/MESSy, Combo GMI) to identify barriers as well as regions of rapid mixing and transport.

  3. GEOS-5 Chemistry Transport Model User's Guide

    NASA Technical Reports Server (NTRS)

    Kouatchou, J.; Molod, A.; Nielsen, J. E.; Auer, B.; Putman, W.; Clune, T.

    2015-01-01

    The Goddard Earth Observing System version 5 (GEOS-5) General Circulation Model (GCM) makes use of the Earth System Modeling Framework (ESMF) to enable model configurations with many functions. One of the options of the GEOS-5 GCM is the GEOS-5 Chemistry Transport Model (GEOS-5 CTM), which is an offline simulation of chemistry and constituent transport driven by a specified meteorology and other model output fields. This document describes the basic components of the GEOS-5 CTM, and is a user's guide on to how to obtain and run simulations on the NCCS Discover platform. In addition, we provide information on how to change the model configuration input files to meet users' needs.

  4. Reactive chemical transport in ground-water hydrology: Challenges to mathematical modeling

    SciTech Connect

    Narasimhan, T.N.; Apps, J.A.

    1990-07-01

    For a long time, earth scientists have qualitatively recognized that mineral assemblages in soils and rocks conform to established principles of chemistry. In the early 1960's geochemists began systematizing this knowledge by developing quantitative thermodynamic models based on equilibrium considerations. These models have since been coupled with advective-dispersive-diffusive transport models, already developed by ground-water hydrologists. Spurred by a need for handling difficult environmental issues related to ground-water contamination, these models are being improved, refined and applied to realistic problems of interest. There is little doubt that these models will play an important role in solving important problems of engineering as well as science over the coming years. Even as these models are being used practically, there is scope for their improvement and many challenges lie ahead. In addition to improving the conceptual basis of the governing equations, much remains to be done to incorporate kinetic processes and biological mediation into extant chemical equilibrium models. Much also remains to be learned about the limits to which model predictability can be reasonably taken. The purpose of this paper is to broadly assess the current status of knowledge in modeling reactive chemical transport and to identify the challenges that lie ahead.

  5. Modeling Fate and Transport of Cryptosporidium Parvum Oocysts in Overland and Near- surface Flow

    NASA Astrophysics Data System (ADS)

    Bhattarai, R.; Kalita, P.; Kuhlenschmidt, M. S.

    2008-12-01

    Cryptosporidium parvum is a manure-borne protozoan parasite which is common in the environment. It has been recognized as an important microbial contaminant of water and can cause infection and diarrhea in many mammalian hosts, including humans. The laboratory experiments carried out have demonstrated that recovery of C. parvum oocysts was significantly affected by climatic and surface conditions like slope, rainfall and surface cover. The objective of this study is to develop a model for simulating transport of C. parvum oocysts in overland and near-surface flow. Modeling can help understanding oocysts transport pathways. Accordingly, best management practices (BMP) can be developed. Transport of oocysts in overland flow can be simulated mathematically by including terms for the concentration of the oocysts in the liquid phase (in suspension or free-floating) and the solid phase (adsorbed to the fine solid particles like clay). Oocysts adsorption, advection and decay processes are considered. These processes are solved using numerical technique to predict spatial and temporal changes in oocyst concentrations in solid and liquid phases. The model results are compared with experimental data to validate the model outcome. The model output reproduced observed recovery kinetics for 1.5% slope but not for higher slopes (3.0% and 4.5%).

  6. Flow and transport simulation models for prediction of chlorine contact tank flow-through curves.

    PubMed

    Wang, Hong; Shao, Xuejun; Falconer, Roger A

    2003-01-01

    Turbulent flow, solute transport, and chemical and biological decay are some of the basic processes encountered in water treatment plants. This paper presents recent developments in the numerical simulation of turbulent flow and disinfection processes in disinfection contact tanks. Simulation runs have been conducted for various tank design alternatives and in different grid resolutions. The accuracy of simulated contact tank flow and the disinfection process depends largely on calculations of the hydrodynamic and solute transport characteristics in the tanks. A key factor of this is the accuracy of advection and shear stress term computations, which can be affected by the use of different hydrodynamic submodels and numerical schemes. The performance of a simulation model relies to a great extent on the right combination of such submodels and numerical schemes. In this study, a number of simulation models were tested against realistic tank configurations and measurements to evaluate the various combinations of turbulence models and difference schemes by analyzing predicted flow and solute transport patterns, as well as the corresponding flow-through curves. Models for disinfection tank simulations are recommended based on comparisons of simulation results with measurements. These models may also be applied to other water treatment processes such as wastewater treatment.

  7. Transport and degradation of propylene glycol in the vadose zone: model development and sensitivity analysis.

    PubMed

    Schotanus, D; Meeussen, J C L; Lissner, H; van der Ploeg, M J; Wehrer, M; Totsche, K U; van der Zee, S E A T M

    2014-01-01

    Transport and degradation of de-icing chemical (containing propylene glycol, PG) in the vadose zone were studied with a lysimeter experiment and a model, in which transient water flow, kinetic degradation of PG and soil chemistry were combined. The lysimeter experiment indicated that aerobic as well as anaerobic degradation occurs in the vadose zone. Therefore, the model included both types of degradation, which was made possible by assuming advection-controlled (mobile) and diffusion-controlled (immobile) zones. In the mobile zone, oxygen can be transported by diffusion in the gas phase. The immobile zone is always water-saturated, and oxygen only diffuses slowly in the water phase. Therefore, the model is designed in a way that the redox potential can decrease when PG is degraded, and thus, anaerobic degradation can occur. In our model, manganese oxide (MnO2, which is present in the soil) and NO3- (applied to enhance biodegradation) can be used as electron acceptors for anaerobic degradation. The application of NO3- does not result in a lower leaching of PG nor in a slower depletion of MnO2. The thickness of the snowcover influences the leached fraction of PG, as with a high infiltration rate, transport is fast, there is less time for degradation and thus more PG will leach. The model showed that, in this soil, the effect of the water flow dominates over the effect of the degradation parameters on the leaching at a 1-m depth.

  8. Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS

    USGS Publications Warehouse

    Morway, Eric D.; Niswonger, Richard G.; Langevin, Christian D.; Bailey, Ryan T.; Healy, Richard W.

    2013-01-01

    The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship.

  9. Modeling variably saturated subsurface solute transport with MODFLOW-UZF and MT3DMS.

    PubMed

    Morway, Eric D; Niswonger, Richard G; Langevin, Christian D; Bailey, Ryan T; Healy, Richard W

    2013-03-01

    The MT3DMS groundwater solute transport model was modified to simulate solute transport in the unsaturated zone by incorporating the unsaturated-zone flow (UZF1) package developed for MODFLOW. The modified MT3DMS code uses a volume-averaged approach in which Lagrangian-based UZF1 fluid fluxes and storage changes are mapped onto a fixed grid. Referred to as UZF-MT3DMS, the linked model was tested against published benchmarks solved analytically as well as against other published codes, most frequently the U.S. Geological Survey's Variably-Saturated Two-Dimensional Flow and Transport Model. Results from a suite of test cases demonstrate that the modified code accurately simulates solute advection, dispersion, and reaction in the unsaturated zone. Two- and three-dimensional simulations also were investigated to ensure unsaturated-saturated zone interaction was simulated correctly. Because the UZF1 solution is analytical, large-scale flow and transport investigations can be performed free from the computational and data burdens required by numerical solutions to Richards' equation. Results demonstrate that significant simulation runtime savings can be achieved with UZF-MT3DMS, an important development when hundreds or thousands of model runs are required during parameter estimation and uncertainty analysis. Three-dimensional variably saturated flow and transport simulations revealed UZF-MT3DMS to have runtimes that are less than one tenth of the time required by models that rely on Richards' equation. Given its accuracy and efficiency, and the wide-spread use of both MODFLOW and MT3DMS, the added capability of unsaturated-zone transport in this familiar modeling framework stands to benefit a broad user-ship.

  10. [Model of active peristaltic transport in biosystems].

    PubMed

    Klochkov, B N; Romanov, A S

    2013-01-01

    A nonlinear distributed mathematical model of soft vessel with the nonmonotonous static characteristic is proposed and considered. The model describes space-time dynamics of vessel clearance change. Wave phenomena in vessels of different nature and the possibility of peristaltic fluid pumping are discussed and analyzed. The model is rather common in character and represents a description of the whole class of transport phenomena. Lymphatic vessels are particularly considered.

  11. Interface area transport of monodispersed spherical particulates

    SciTech Connect

    Chang, Chong H.

    2016-08-05

    We present an interface area transport model required in tracking of mass, momentum, and energy exchange between dispersed and background materials. The basic transport equation has been rigorously derived from the volume fraction evolution equation. Interface area changes due to mass transport and local compression/expansion are included. The model is then simplified for the case in which the dispersed phase is composed of spheres of locally uniform size. A procedure for calculating advective flux with interface reconstruction has been suggested.

  12. Persistence of cluster synchronization under the influence of advection.

    PubMed

    Guirey, Emma; Bees, Martin; Martin, Adrian; Srokosz, Meric

    2010-05-01

    We present a study on the emergence of spatial structure in plankton dynamics under the influence of stirring and mixing. A distribution of plankton is represented as a lattice of nonidentical, interacting, oscillatory plankton populations. Each population evolves according to (i) the internal biological dynamics represented by an NPZ model with population-specific phytoplankton growth rate, (ii) sub-grid-cell stirring and mixing parameterized by a nearest-neighbor coupling, and (iii) explicit advection resulting from a constant horizontal shear. Using the methods of synchronization theory, the emergent spatial structure of the simulation is investigated as a function of the coupling strength and rate of advection. Previous work using similar methods has neglected the effects of explicit stirring (i.e., at scales larger than the grid cell), leaving as an open question the relevance of the work to real marine systems. Here, we show that persistent spatial structure emerges for a range of coupling strengths for all realistic levels of surface ocean shear. Spatially, this corresponds to the formation of temporally evolving clusters of local synchronization. Increasing shear alters the spatial characteristics of this clustering by stretching and narrowing patches of synchronized dynamics. These patches are not stretched into stripes of synchronized abundance aligned with the flow, as may be expected, but instead lie at an angle to the flow. This study shows that advection does not diminish the relevance of conclusions from previous studies of spatial structure in plankton simulations. In fact, the inclusion of advection adds characteristic filamental structure, as observed in real-world plankton distributions. The results also show that the ability of coupled oscillators to synchronize depends strongly on the spatial arrangement of oscillator natural frequencies; under the influence of advection, therefore, the impact of the coupling strength on the emergent spatial

  13. Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model

    USGS Publications Warehouse

    Warner, J.C.; Sherwood, C.R.; Signell, R.P.; Harris, C.K.; Arango, H.G.

    2008-01-01

    We are developing a three-dimensional numerical model that implements algorithms for sediment transport and evolution of bottom morphology in the coastal-circulation model Regional Ocean Modeling System (ROMS v3.0), and provides a two-way link between ROMS and the wave model Simulating Waves in the Nearshore (SWAN) via the Model-Coupling Toolkit. The coupled model is applicable for fluvial, estuarine, shelf, and nearshore (surfzone) environments. Three-dimensional radiation-stress terms have been included in the momentum equations, along with effects of a surface wave roller model. The sediment-transport algorithms are implemented for an unlimited number of user-defined non-cohesive sediment classes. Each class has attributes of grain diameter, density, settling velocity, critical stress threshold for erosion, and erodibility constant. Suspended-sediment transport in the water column is computed with the same advection-diffusion algorithm used for all passive tracers and an additional algorithm for vertical settling that is not limited by the CFL criterion. Erosion and deposition are based on flux formulations. A multi-level bed framework tracks the distribution of every size class in each layer and stores bulk properties including layer thickness, porosity, and mass, allowing computation of bed morphology and stratigraphy. Also tracked are bed-surface properties including active-layer thickness, ripple geometry, and bed roughness. Bedload transport is calculated for mobile sediment classes in the top layer. Bottom-boundary layer submodels parameterize wave-current interactions that enhance bottom stresses and thereby facilitate sediment transport and increase bottom drag, creating a feedback to the circulation. The model is demonstrated in a series of simple test cases and a realistic application in Massachusetts Bay. ?? 2008 Elsevier Ltd. All rights reserved.

  14. Modelling physical-biological interactions in the Southeast Brazil Bight: transport patterns of Brazilian Sardine larvae

    NASA Astrophysics Data System (ADS)

    Faggiani Dias, D.; Gherardi, D. F.; Pezzi, L. P.

    2013-05-01

    The advection of Brazilian Sardine (Sardinella brasiliensis) eggs and larvae in the SBB was modeled using an individual-based model (Ichthyop) and a hydrodynamic model (Regional Ocean Modeling System, ROMS) to test for differences in larval retention for five spawning areas with high probability of egg occurrence: i) two areas north of the domain - Cape Frio and Rio de Janeiro, ii) one in the middle in Sao Sebastiao, and iii) two in the South in Paranagua. According to previous studies, this encompasses the known spawning habitat. Advective processes and physical characteristics, such as water temperature and salinity, were considered to determine larvae transport and survival. The hydrodynamic model grid has a horizontal resolution of 1/12o. Results of monthly mean Sea Surface Temperature (MSST) and Sea Surface Height (MSSH) indicate there isn't warming or cooling trend over the years, and the seasonal cycle well represented. These results were compared with satellite-derived data from the AVHRR sensor and AVISO project. Model results accurately represent the position and shape of the main surface structures observed in the satellite data. Monthly MSST maps for the experiment period indicate that the model tends to underestimate temperatures in upwelling areas and overestimate in the Brazil Current region, with differences mostly around ±1oC. For MSSH, although the model represents well the main surface ocean structures, it tends to underestimate along the domain. Temperature-salinity diagrams plotted in a coastal area for December of four years (1985, 1986, 1987 and 1988), near Ubatuba region, are consistent with field collected data, suggesting that the main water masses in SBB are reliably represented. The IBM experiments were carried out during the summer of six years (1980, 1981, 1988, 1991, 1992 and 1993). For each year, 20000 eggs were released, distributed in the five areas, and tracked for 45 days. At the end of simulation, the mortality due to

  15. Climate Impact of Transportation A Model Comparison

    SciTech Connect

    Girod, Bastien; Van Vuuren, Detlef; Grahn, Maria; Kitous, Alban; Kim, Son H.; Kyle, G. Page

    2013-06-01

    Transportation contributes to a significant and rising share of global energy use and GHG emissions. Therefore modeling future travel demand, its fuel use, and resulting CO2 emission is highly relevant for climate change mitigation. In this study we compare the baseline projections for global service demand (passenger-kilometers, ton-kilometers), fuel use, and CO2 emissions of five different global transport models using harmonized input assumptions on income and population. For four models we also evaluate the impact of a carbon tax. All models project a steep increase in service demand over the century. Technology is important for limiting energy consumption and CO2 emissions, but quite radical changes in the technology mix are required to stabilize or reverse the trend. While all models project liquid fossil fuels dominating up to 2050, they differ regarding the use of alternative fuels (natural gas, hydrogen, biofuels, and electricity), because of different fuel price projections. The carbon tax of US$200/tCO2 in 2050 stabilizes or reverses global emission growth in all models. Besides common findings many differences in the model assumptions and projections indicate room for improvement in modeling and empirical description of the transport system.

  16. Investigating the Macrodispersion Experiment (MADE) site in Columbus, Mississippi, using a three-dimensional inverse flow and transport model

    USGS Publications Warehouse

    Barlebo, H.C.; Hill, M.C.; Rosbjerg, D.

    2004-01-01

    Flowmeter-measured hydraulic conductivities from the heterogeneous MADE site have been used predictively in advection-dispersion models. Resulting simulated concentrations failed to reproduce even major plume characteristics and some have concluded that other mechanisms, such as dual porosity, are important. Here an alternative possibility is investigated: that the small-scale flowmeter measurements are too noisy and possibly too biased to use so directly in site-scale models and that the hydraulic head and transport data are more suitable for site-scale characterization. Using a calibrated finite element model of the site and a new framework to evaluate random and systematic model and measurement errors, the following conclusions are derived. (1) If variations in subsurface fluid velocities like those simulated in this work (0.1 and 2.0 m per day along parallel and reasonably close flow paths) exist, it is likely that classical advection-dispersion processes can explain the measured plume characteristics. (2) The flowmeter measurements are possibly systematically lower than site-scale values when the measurements are considered individually and using common averaging methods and display variability that obscures abrupt changes in hydraulic conductivities that are well supported by changes in hydraulic gradients and are important to the simulation of transport.

  17. Lattice Boltzmann modeling of phonon transport

    NASA Astrophysics Data System (ADS)

    Guo, Yangyu; Wang, Moran

    2016-06-01

    A novel lattice Boltzmann scheme is proposed for phonon transport based on the phonon Boltzmann equation. Through the Chapman-Enskog expansion, the phonon lattice Boltzmann equation under the gray relaxation time approximation recovers the classical Fourier's law in the diffusive limit. The numerical parameters in the lattice Boltzmann model are therefore rigorously correlated to the bulk material properties. The new scheme does not only eliminate the fictitious phonon speed in the diagonal direction of a square lattice system in the previous lattice Boltzmann models, but also displays very robust performances in predicting both temperature and heat flux distributions consistent with analytical solutions for diverse numerical cases, including steady-state and transient, macroscale and microscale, one-dimensional and multi-dimensional phonon heat transport. This method may provide a powerful numerical tool for deep studies of nonlinear and nonlocal heat transports in nanosystems.

  18. Contamination transport modeling with CTSP (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Brieda, Lubos

    2016-09-01

    CTSP (Contamination Transport Simulation Program) is a simulation program for performing detailed molecular and particulate contaminant transport analyses using complex, CAD-generated geometries. CTSP concurrently traces many simulation macroparticles, allowing it to compute contaminant partial pressures. The code uses a detailed surface model that supports multiple trapped gases and a multi-component surface layer. The molecular residence time is computed by considering surface temperature and activation energies. This paper describes the implemented algorithms and demonstrates the code with several test cases. These include outgassing in a vacuum chamber, spacecraft venting, particulate transport in an air flow, and redistribution of paint flakes on an orbiting satellite. The paper is concluded by summarizing the on-going effort to parallelize the code and utilize GPUs, and to add support for electrostatic return modeling by computing space potential using Green's functions.

  19. Effect of natural particles on the transport of lindane in saturated porous media: Laboratory experiments and model-based analysis

    NASA Astrophysics Data System (ADS)

    Ngueleu, Stéphane K.; Grathwohl, Peter; Cirpka, Olaf A.

    2013-06-01

    Colloidal particles can act as carriers for adsorbing pollutants, such as hydrophobic organic pollutants, and enhance their mobility in the subsurface. In this study, we investigate the influence of colloidal particles on the transport of pesticides through saturated porous media by column experiments. We also investigate the effect of particle size on this transport. The model pesticide is lindane (gamma-hexachlorocyclohexane), a representative hydrophobic insecticide which has been banned in 2009 but is still used in many developing countries. The breakthrough curves are analyzed with the help of numerical modeling, in which we examine the minimum model complexity needed to simulate such transport. The transport of lindane without particles can be described by advective-dispersive transport coupled to linear three-site sorption, one site being in local equilibrium and the others undergoing first-order kinetic sorption. In the presence of mobile particles, the total concentration of mobile lindane is increased, that is, lindane is transported not only in aqueous solution but also sorbed onto the smallest, mobile particles. The models developed to simulate separate and associated transport of lindane and the particles reproduced the measurements very well and showed that the adsorption/desorption of lindane to the particles could be expressed by a common first-order rate law, regardless whether the particles are mobile, attached, or strained.

  20. Analytical models of the impact of two-phase sorption on subsurface transport of volatile chemicals

    SciTech Connect

    Shoemaker, C.A.; Culver, T.B.; Lion, L.W.; Peterson, M.G. )

    1990-04-01

    Unsaturated zone models incorporating the impact of vapor-phase sorption on transport of volatile organic compounds are presented with closed from solutions for one-and two-dimensional cases. In addition to vapor-phase sorption the models incorporate liquid-phase sorption, liquid advection, gaseous diffusion, and volatilization into soil air spaces and to the atmosphere. The motivation for incorporation of vapor-phase sorption arises from recent experimental results by the authors indicating that vapor-phase sorption may be orders of magnitude higher than liquid-phase sorption under certain soil conditions. The sensitivity analysis suggests that there is considerable interaction among the physical and chemical processes involved in transport of volatile organic compounds. Pollutant concentrations are most affected by the Henry's law constant and gaseous diffusion; the speed of movement of the material depends most upon the pore water velocity and vapor-phase sorption. The incorporation of vapor-phase sorption can significantly reduce model predictions of the transport speed and amount of volatile chemical reaching the groundwater under dry soil conditions. This result is of considerable practical significance since models currently used for remediation and regulation do not include vapor-phase sorption.

  1. Modeling hydrology and reactive transport in roads: the effect of cracks, the edge, and contaminant properties.

    PubMed

    Apul, Defne S; Gardner, Kevin H; Eighmy, T Taylor

    2007-01-01

    The goal of this research was to provide a tool for regulators to evaluate the groundwater contamination from the use of virgin and secondary materials in road construction. A finite element model, HYDRUS2D, was used to evaluate generic scenarios for secondary material use in base layers. Use of generic model results for particular applications was demonstrated through a steel slag example. The hydrology and reactive transport of contaminants were modeled in a two-dimensional cross section of a road. Model simulations showed that in an intact pavement, lateral velocities from the edge towards the centerline may transport contaminants in the base layer. The dominant transport mechanisms are advection closer to the edge and diffusion closer to the centerline. A shoulder joint in the pavement allows 0.03 to 0.45 m(3)/day of infiltration per meter of joint length as a function of the base and subgrade hydrology and the rain intensity. Scenario simulations showed that salts in the base layer of pavements are depleted by 99% in the first 20 years, whereas the metals may not reach the groundwater in 20 years at any significant concentrations if the pavement is built on adsorbing soils.

  2. Modeling hydrology and reactive transport in roads: The effect of cracks, the edge, and contaminant properties

    SciTech Connect

    Apul, Defne S. Gardner, Kevin H. Eighmy, T. Taylor

    2007-07-01

    The goal of this research was to provide a tool for regulators to evaluate the groundwater contamination from the use of virgin and secondary materials in road construction. A finite element model, HYDRUS2D, was used to evaluate generic scenarios for secondary material use in base layers. Use of generic model results for particular applications was demonstrated through a steel slag example. The hydrology and reactive transport of contaminants were modeled in a two-dimensional cross section of a road. Model simulations showed that in an intact pavement, lateral velocities from the edge towards the centerline may transport contaminants in the base layer. The dominant transport mechanisms are advection closer to the edge and diffusion closer to the centerline. A shoulder joint in the pavement allows 0.03 to 0.45 m{sup 3}/day of infiltration per meter of joint length as a function of the base and subgrade hydrology and the rain intensity. Scenario simulations showed that salts in the base layer of pavements are depleted by 99% in the first 20 years, whereas the metals may not reach the groundwater in 20 years at any significant concentrations if the pavement is built on adsorbing soils.

  3. Microscale-based modeling of polynuclear aromatic hydrocarbon transport and biodegradation in soil

    SciTech Connect

    Ahn, I.S.; Lion, L.W.; Shuler, M.L.

    1996-07-05

    A mathematical model to describe polynuclear aromatic hydrocarbon (PAH) desorption, transport, and biodegradation in saturated soil was constructed by describing kinetics at a microscopic level and incorporating this description into macroscale transport equations. This approach is novel in that the macroscale predictions are made independently from a knowledge of microscale kinetics and macroscopic fluid dynamics and no adjustable parameters are used to fit the macroscopic response. It was assumed that soil organic matter, the principal site of PAH sorption, was composed of a continuum of compartments with a gamma distribution of desorption rate coefficients. The mass transport of substrates and microorganisms in a mesopore was described by diffusion and that in a macropore by one-dimensional advection and dispersion. Naphthalene was considered as a test PAH compound for initial model simulations. Three mechanisms of naphthalene biodegradation were considered: growth-associated degradation as a carbon and energy source for microbial growth; degradation for maintenance energy; and growth-independent degradation. The Haldane modification of the Monod equation was used to describe microbial growth rates and to account for possible growth inhibition by naphthalene. Multisubstrate interactions were considered and described with a noninteractive model for specific growth rates. The sensitivity of selected model parameters was analyzed under conditions when naphthalene was the sole growth-rate-limiting substrate.

  4. Experimental tsunami deposits: Linking hydrodynamics to sediment entrainment, advection lengths and downstream fining

    NASA Astrophysics Data System (ADS)

    Johnson, Joel P. L.; Delbecq, Katie; Kim, Wonsuck; Mohrig, David

    2016-01-01

    A goal of paleotsunami research is to quantitatively reconstruct wave hydraulics from sediment deposits in order to better understand coastal hazards. Simple models have been proposed to predict wave heights and velocities, based largely on deposit grain size distributions (GSDs). Although seemingly consistent with some recent tsunamis, little independent data exist to test these equations. We conducted laboratory experiments to evaluate inversion assumptions and uncertainties. A computer-controlled lift gate instantaneously released 6.5 m3 of water into a 32 m flume with shallow ponded water, creating a hydraulic bore that transported sand from an upstream source dune. Differences in initial GSDs and ponded water depths influenced entrainment, transport, and deposition. While the source dune sand was fully suspendable based on size alone, experimental tsunamis produced deposits dominated by bed load sand transport in the upstream 1/3 of the flume and suspension-dominated transport downstream. The suspension deposits exhibited downstream fining and thinning. At 95% confidence, a published advection-settling model predicts time-averaged flow depths to approximately a factor of two, and time-averaged downstream flow velocities to within a factor of 1.5. Finally, reasonable scaling is found between flume and field cases by comparing flow depths, inundation distances, Froude numbers, Rouse numbers and grain size trends in suspension-dominated tsunami deposits, justifying laboratory study of sediment transport and deposition by tsunamis.

  5. Modeling Facilitated Contaminant Transport by Mobile Bacteria

    NASA Astrophysics Data System (ADS)

    Corapcioglu, M. Yavuz; Kim, Seunghyun

    1995-01-01

    Introduction of exogenous biocolloids such as genetically engineered bacteria in a bioremediation operation can enhance the transport of contaminants in groundwater by reducing the retardation effects. Because of their colloidal size and favorable surface conditions, bacteria are efficient contaminant carriers. In cases where contaminants have a low mobility in porous media because of their high partition with solid matrix, facilitated contaminant transport by mobile bacteria can create high contaminant fluxes. When metabolically active mobile bacteria are present in a subsurface environment, the system can be treated as consisting of three phases: water phase, bacterial phase, and stationary solid matrix phase. In this work a mathematical model based on mass balance equations is developed to describe the facilitated transport and fate of a contaminant and bacteria in a porous medium. Bacterial partition between the bulk solution and the stationary solid matrix and contaminant partition among three phases are represented by expressions in terms of measurable quantities. Solutions were obtained to provide estimates of contaminant and bacterial concentrations. A dimensional analysis of the transport model was utilized to estimate model parameters from the experimental data and to assess the effect of several parameters on model behavior. The model results matched favorably with experimental data of Jenkins and Lion (1993). The presence of mobile bacteria enhances the contaminant transport. However, bacterial consumption of the contaminant, which serves as a bacterial nutrient, can attenuate the contaminant mobility. The work presented in this paper is the first three-phase model to include the effects of substrate metabolism on the fate of groundwater contaminants.

  6. Glucose Transport Machinery Reconstituted in Cell Models

    PubMed Central

    Hansen, Jesper S.; Elbing, Karin; Thompson, James R.; Malmstadt, Noah

    2015-01-01

    Here we demonstrate the production of a functioning cell model by formation of giant vesicles reconstituted with the GLUT1 glucose transporter and a glucose oxidase and hydrogen peroxidase linked fluorescent reporter internally. Hence, a simplified artificial cell is formed that is able to take up glucose and process it. PMID:25562394

  7. Glucose transport machinery reconstituted in cell models.

    PubMed

    Hansen, Jesper S; Elbing, Karin; Thompson, James R; Malmstadt, Noah; Lindkvist-Petersson, Karin

    2015-02-11

    Here we demonstrate the production of a functioning cell model by formation of giant vesicles reconstituted with the GLUT1 glucose transporter and a glucose oxidase and hydrogen peroxidase linked fluorescent reporter internally. Hence, a simplified artificial cell is formed that is able to take up glucose and process it.

  8. Aerosol particles and the formation of advection fog

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Liaw, G. S.; Vaughan, O. H., Jr.

    1979-01-01

    A study of numerical simulation of the effects of concentration, particle size, mass of nuclei, and chemical composition on the dynamics of warm fog formation, particularly the formation of advection fog, is presented. This formation is associated with the aerosol particle characteristics, and both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content, and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution. It is shown that the aerosol particles with the higher number density, larger size nuclei, the heavier nuclei mass, and the higher ratio of the Van't Hoff factor to the molecular weight favor the formation of the lower visibility advection fogs with stronger vertical energy transfer during the nucleation and condensation time period.

  9. Upscaling of U(VI) Desorption and Transport from Decimeter-Scale Heterogeneity to Plume-Scale Modeling

    SciTech Connect

    Curtis, Gary P.; Kohler, Matthias; Kannappan, Ramakrishnan; Briggs, Martin; Day-Lewis, Fred

    2015-02-24

    Scientifically defensible predictions of field scale U(VI) transport in groundwater requires an understanding of key processes at multiple scales. These scales range from smaller than the sediment grain scale (less than 10 μm) to as large as the field scale which can extend over several kilometers. The key processes that need to be considered include both geochemical reactions in solution and at sediment surfaces as well as physical transport processes including advection, dispersion, and pore-scale diffusion. The research summarized in this report includes both experimental and modeling results in batch, column and tracer tests. The objectives of this research were to: (1) quantify the rates of U(VI) desorption from sediments acquired from a uranium contaminated aquifer in batch experiments;(2) quantify rates of U(VI) desorption in column experiments with variable chemical conditions, and(3) quantify nonreactive tracer and U(VI) transport in field tests.

  10. Improved numerical modeling of groundwater flow and transport at the MADE-2 site. Final report

    SciTech Connect

    Gray, D.D.; Rucker, D.F.

    1995-02-01

    Public domain computer programs were used to attempt an improved model of the tritium plume observed during Macrodispersion Experiment 2 (MADE-2), a field scale natural gradient experiment conducted at Columbus Air Force Base, Mississippi. The finite difference program MODFLOW was used to simulate the flow of groundwater through a 330 m x 105 m computational domain. Solutions for the 468 day experiment were obtained using a Sun Sparcstation 2 for several choices of convergence and storage parameters. The simulations had small mass balance errors and were consistent with continuous head observations. Tritium plume simulations used the mixed Lagrangian-Eulerian finite difference program MT3D to solve the contaminant transport equation using the MODFLOW-predicted flow field. Thirteen runs were made using various advection algorithms and dispersivities, but none was successful.

  11. Subsurface barrier design alternatives for confinement and controlled advection flow

    SciTech Connect

    Phillips, S.J.; Stewart, W.E.; Alexander, R.G.; Cantrell, K.J.; McLaughlin, T.J.

    1994-02-01

    Various technologies and designs are being considered to serve as subsurface barriers to confine or control contaminant migration from underground waste storage or disposal structures containing radioactive and hazardous wastes. Alternatives including direct-coupled flood and controlled advection designs are described as preconceptual examples. Prototype geotechnical equipment for testing and demonstration of these alternative designs tested at the Hanford Geotechnical Development and Test Facility and the Hanford Small-Tube Lysimeter Facility include mobile high-pressure injectors and pumps, mobile transport and pumping units, vibratory and impact pile drivers, and mobile batching systems. Preliminary laboratory testing of barrier materials and additive sequestering agents have been completed and are described.

  12. Is Chaotic Advection Inherent to Porous Media Flow?

    NASA Astrophysics Data System (ADS)

    Lester, Daniel; Metcalfe, Guy; Trefry, Mike

    2013-11-01

    All porous media, including granular and packed media, fractured and open networks, are typified by the inherent topological complexity of the pore-space. This topological complexity admits a large number density of stagnation points under steady Stokes flow, which in turn generates a 3D fluid mechanical analouge of the Bakers map, termed the Baker's flow. We demonstrate that via this mechanism, chaotic advection at the pore-scale is inherent to almost all porous media under reasonable conditions, and such dynamics have significant implications for a range of fluid-borne processes including transport and mixing, chemical reactions and biological activity.

  13. Virus-sized colloid transport in a single pore: model development and sensitivity analysis.

    PubMed

    Seetha, N; Mohan Kumar, M S; Majid Hassanizadeh, S; Raoof, Amir

    2014-08-01

    A mathematical model is developed to simulate the transport and deposition of virus-sized colloids in a cylindrical pore throat considering various processes such as advection, diffusion, colloid-collector surface interactions and hydrodynamic wall effects. The pore space is divided into three different regions, namely, bulk, diffusion and potential regions, based on the dominant processes acting in each of these regions. In the bulk region, colloid transport is governed by advection and diffusion whereas in the diffusion region, colloid mobility due to diffusion is retarded by hydrodynamic wall effects. Colloid-collector interaction forces dominate the transport in the potential region where colloid deposition occurs. The governing equations are non-dimensionalized and solved numerically. A sensitivity analysis indicates that the virus-sized colloid transport and deposition is significantly affected by various pore-scale parameters such as the surface potentials on colloid and collector, ionic strength of the solution, flow velocity, pore size and colloid size. The adsorbed concentration and hence, the favorability of the surface for adsorption increases with: (i) decreasing magnitude and ratio of surface potentials on colloid and collector, (ii) increasing ionic strength and (iii) increasing pore radius. The adsorbed concentration increases with increasing Pe, reaching a maximum value at Pe=0.1 and then decreases thereafter. Also, the colloid size significantly affects particle deposition with the adsorbed concentration increasing with increasing particle radius, reaching a maximum value at a particle radius of 100nm and then decreasing with increasing radius. System hydrodynamics is found to have a greater effect on larger particles than on smaller ones. The secondary minimum contribution to particle deposition has been found to increase as the favorability of the surface for adsorption decreases. The sensitivity of the model to a given parameter will be high if

  14. Gas Transport Parameters for Landfill Final Cover Soil: Measurements and Model Modification by Dry Bulk Density

    NASA Astrophysics Data System (ADS)

    Wickramarachchi, P. N.; Kawamoto, K.; Hamamoto, S.; Nagamori, M.; Moldrup, P.; Komatsu, T.

    2011-12-01

    Landfill sites have been emerging in greenhouse warming scenarios as a significant source of atmospheric methane (CH4). Until recently, landfill management strategies have mainly addressed the problem of preventing groundwater contamination and reduction of leachate generation. Being one of the largest sources of anthropogenic CH4 emission, the final cover system should also be designed for minimizing the greenhouse gases migration into the atmosphere or the areas surrounding the landfill while securing the hydraulic performance. Compared to the intensive research efforts on hydraulic performances of landfill final cover soil, few studies about gas transport characteristics of landfill cover soils have been done. However, recent soil-gas studies implied that the effects of soil physical properties such as bulk density (i.e., compaction level), soil particle size are key parameters to understand landfill gaseous performance. The gas exchange through the final cover soils is controlled by advective and diffusive gas transport. Air permeability (ka) governs the advective gas transport while the soil-gas diffusion coefficient (Dp) governs diffusive gas transport. In this study, the effects of compaction level and particle size fraction effects on ka and Dp for landfill final cover soil was investigated. The disturbed soil samples were taken from landfill final cover in Japan. A compaction tests were performed for the soil samples with two different size fractions (< 35 mm and < 2.0 mm). In the compaction tests at field water content , the soil samples were repacked into soil cores (i.d. 15-cm, length 12-cm, 2120 cm3) at two different compaction levels [(MP):2700 kN/m2 and (SP):600 kN/m2]. After the compaction tests, ka and Dp were measured and then samples were saturated and subsequently drained at different soil-water matric potential of 0.98, 2.94, 9.81, 1235 kPa and with air-dried and oven-dried conditions. Results showed that measured Dp and ka values for the

  15. The LEM exponential integrator for advection-diffusion-reaction equations

    NASA Astrophysics Data System (ADS)

    Caliari, Marco; Vianello, Marco; Bergamaschi, Luca

    2007-12-01

    We implement a second-order exponential integrator for semidiscretized advection-diffusion-reaction equations, obtained by coupling exponential-like Euler and Midpoint integrators, and computing the relevant matrix exponentials by polynomial interpolation at Leja points. Numerical tests on 2D models discretized in space by finite differences or finite elements, show that the Leja-Euler-Midpoint (LEM) exponential integrator can be up to 5 times faster than a classical second-order implicit solver.

  16. Applications of a thermal-based two-source energy balance model using Priestley-Taylor approach for surface temperature partitioning (TSEB_PTT) under advective conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Operational application of the two source energy balance model (TSEB) which can estimate evaportranspiration (ET) and the components evaporation (E), transpiration (T) of the land surface in different climates is very useful for many applications in hydrology and agriculture. The TSEB model uses an ...

  17. Stochastic models for convective momentum transport.

    PubMed

    Majda, Andrew J; Stechmann, Samuel N

    2008-11-18

    The improved parameterization of unresolved features of tropical convection is a central challenge in current computer models for long-range ensemble forecasting of weather and short-term climate change. Observations, theory, and detailed smaller-scale numerical simulations suggest that convective momentum transport (CMT) from the unresolved scales to the resolved scales is one of the major deficiencies in contemporary computer models. Here, a combination of mathematical and physical reasoning is utilized to build simple stochastic models that capture the significant intermittent upscale transports of CMT on the large scales due to organized unresolved convection from squall lines. Properties of the stochastic model for CMT are developed below in a test column model environment for the large-scale variables. The effects of CMT from the stochastic model on a large-scale convectively coupled wave in an idealized setting are presented below as a nontrivial test problem. Here, the upscale transports from stochastic effects are significant and even generate a large-scale mean flow which can interact with the convectively coupled wave.

  18. Bioturbation, advection, and diffusion of a conserved tracer in a laboratory flume

    NASA Astrophysics Data System (ADS)

    Work, P. A.; Moore, P. R.; Reible, D. D.

    2002-06-01

    Laboratory experiments indicating the relative influences of advection, diffusion, and bioturbation on transport of NaCl tracer between a stream and streambed are described. Data were collected in a recirculating flume housing a box filled with test sediments. Peclet numbers ranged from 0 to 1.5. Sediment components included a medium sand (d50 = 0.31 mm), kaolinite, and topsoil. Lumbriculus variegatus were introduced as bioturbators. Conductivity probes were employed to document the flux of the tracer solution out of the bed. Measurements are compared to one-dimensional effective diffusion models assuming one or two horizontal sediment layers. These simple models provide a good indication of tracer half-life in the bed if a suitable effective diffusion coefficient is chosen but underpredict initial flux and overpredict flux at long times. Organism activity was limited to the upper reaches of the sediment test box but eventually exerts a secondary influence on flux from deeper regions.

  19. Chaotic advection in 2D anisotropic porous media

    NASA Astrophysics Data System (ADS)

    Varghese, Stephen; Speetjens, Michel; Trieling, Ruben; Toschi, Federico

    2015-11-01

    Traditional methods for heat recovery from underground geothermal reservoirs employ a static system of injector-producer wells. Recent studies in literature have shown that using a well-devised pumping scheme, through actuation of multiple injector-producer wells, can dramatically enhance production rates due to the increased scalar / heat transport by means of chaotic advection. However the effect of reservoir anisotropy on kinematic mixing and heat transport is unknown and has to be incorporated and studied for practical deployment in the field. As a first step, we numerically investigate the effect of anisotropy (both magnitude and direction) on (chaotic) advection of passive tracers in a time-periodic Darcy flow within a 2D circular domain driven by periodically reoriented diametrically opposite source-sink pairs. Preliminary results indicate that anisotropy has a significant impact on the location, shape and size of coherent structures in the Poincare sections. This implies that the optimal operating parameters (well spacing, time period of well actuation) may vary strongly and must be carefully chosen so as to enhance subsurface transport. This work is part of the research program of the Foundation for Fundamental Research on Matter (FOM), which is part of Netherlands Organisation for Scientific Research (NWO). This research program is co-financed by Shell Global Solutions International B.V.

  20. Modeling electronic quantum transport with machine learning

    NASA Astrophysics Data System (ADS)

    Lopez-Bezanilla, Alejandro; von Lilienfeld, O. Anatole

    2014-06-01

    We present a machine learning approach to solve electronic quantum transport equations of one-dimensional nanostructures. The transmission coefficients of disordered systems were computed to provide training and test data sets to the machine. The system's representation encodes energetic as well as geometrical information to characterize similarities between disordered configurations, while the Euclidean norm is used as a measure of similarity. Errors for out-of-sample predictions systematically decrease with training set size, enabling the accurate and fast prediction of new transmission coefficients. The remarkable performance of our model to capture the complexity of interference phenomena lends further support to its viability in dealing with transport problems of undulatory nature.

  1. Development and verification of long-range atmospheric transport model of radon-222 and lead-210 including scavenging process

    SciTech Connect

    Hirao, Shigekazu; Nono, Yuki; Yamazawa, Hiromi; Moriizumi, Jun; Iida, Takao; Yoshioka, Katsuhiro

    2008-08-07

    A three-dimensional Eulerian atmospheric long-range transport model of radon-222 ({sup 222}Rn) and lead-210 ({sup 210}Pb) coupled with meteorological model MM5 was developed. The model calculates advection, diffusion, radiation decay and deposition processes in a horizontal scale of several thousand kilometers. This model was applied to East Asia. Performance of the model was evaluated with measured hourly surface air {sup 222}Rn concentration and monthly {sup 210}Pb deposition. The model verification was done with respect to the following points: 1) the sensitivity of vertical distribution of turbulent diffusivity and 2) the accuracy of spatial distribution of precipitation. In this report, improvement of the model performance is also discussed.

  2. ACE-Asia Chemical Transport Modeling Overview

    NASA Astrophysics Data System (ADS)

    UNO, I.; Chin, M.; Collins, W.; Ginoux, P.; Rasch, P.; Carmichael, G. R.; Yienger, J. J.

    2001-12-01

    ACE-Asia (Asia Pacific Regional Aerosol Characterization Experiment) was designed to increase our understanding of how atmospheric aerosol particles affect the Earth?s climate system. The intensive observation period was carried out during March to May, 2001, and more than 100 researchers from several countries (United States, Japan, Korea, China, and many other Asian countries) participated using aircraft, a research vessel, surface stations and numerical models. Aerosol transport forecast activities played an important role during the ACE-Asia intensive observation period. Three independent modeling groups operated chemical transport models in forecast mode and participated in flight planning activities at the operations center. These models were: MATCH (Model of Atmospheric Transport and Chemistry; Rasch and Collins); GOCART (Georgia Tech/Goddard Global Ozone Chemistry Aerosol Radiation and Transport model; Chin and Ginour) and CFORS (Research Institute for Applied Mechanics, Kyushu University + University of Iowa - Chemical weather FORecast System; Uno, Carmichael and Yienger). The MATCH model used in ACE-Asia was a transport model applied for the Asia region, driven by NCEP forecast meteorology. A unique feature of this model was that it assimilated satellite derived optical depths into its forecast algorithm. The GOCART model provided global aerosol forecast using forecast meteorological fields provided by the Goddard Earth Observing System Data Assimilation System (GEOS DAS). The CFORS model provided regional forecasts using a limited area transport model coupled with Regional Meteorological Modeling System (RAMS), initialized by NCEP and JMA forecasts. All models produced 3-d aerosol forecast products consisting of aerosol mass distributions and optical depths for sulfate, black carbon, organic carbon, sea salt, and dust. In the field these model products were made available to all participating scientists via the Web, and were also presented during the

  3. A model of axonal transport drug delivery

    NASA Astrophysics Data System (ADS)

    Kuznetsov, Andrey V.

    2012-04-01

    In this paper a model of targeted drug delivery by means of active (motor-driven) axonal transport is developed. The model is motivated by recent experimental research by Filler et al. (A.G. Filler, G.T. Whiteside, M. Bacon, M. Frederickson, F.A. Howe, M.D. Rabinowitz, A.J. Sokoloff, T.W. Deacon, C. Abell, R. Munglani, J.R. Griffiths, B.A. Bell, A.M.L. Lever, Tri-partite complex for axonal transport drug delivery achieves pharmacological effect, Bmc Neuroscience 11 (2010) 8) that reported synthesis and pharmacological efficiency tests of a tri-partite complex designed for axonal transport drug delivery. The developed model accounts for two populations of pharmaceutical agent complexes (PACs): PACs that are transported retrogradely by dynein motors and PACs that are accumulated in the axon at the Nodes of Ranvier. The transitions between these two populations of PACs are described by first-order reactions. An analytical solution of the coupled system of transient equations describing conservations of these two populations of PACs is obtained by using Laplace transform. Numerical results for various combinations of parameter values are presented and their physical significance is discussed.

  4. Delft Mass Transport model DMT-2

    NASA Astrophysics Data System (ADS)

    Ditmar, Pavel; Hashemi Farahani, Hassan; Inacio, Pedro; Klees, Roland; Zhao, Qile; Guo, Jing; Liu, Xianglin; Sun, Yu; Riva, Ricardo; Ran, Jiangjun

    2013-04-01

    Gravity Recovery And Climate Experiment (GRACE) satellite mission has enormously extended our knowledge of the Earth's system by allowing natural mass transport of various origin to be quantified. This concerns, in particular, the depletion and replenishment of continental water stocks; shrinking of polar ice sheets; deformation of the Earth's crust triggered by large earthquakes, and isostatic adjustment processes. A number of research centers compute models of temporal gravity field variations and mass transport, using GRACE data as input. One of such models - Delft Mass Transport model - is being produced at the Delft University of Technology in collaboration with the GNSS Research Center of Wuhan University. A new release of this model, DMT-2, has been produced on the basis of a new (second) release of GRACE level-1b data. This model consists of a time-series of monthly solutions spanning a time interval of more than 8 years, starting from Feb. 2003. Each solution consists of spherical harmonic coefficients up to degree 120. Both unconstrained and optimally filtered solutions are obtained. The most essential improvements of the DMT-2 model, as compared to its predecessors (DMT-1 and DMT-1b), are as follows: (i) improved estimation and elimination of low-frequency noise in GRACE data, so that strong mass transport signals are not damped; (ii) computation of accurate stochastic models of data noise for each month individually with a subsequent application of frequency-dependent data weighting, which allows statistically optimal solutions to be compiled even if data noise is colored and gradually changes in time; (iii) optimized estimation of accelerometer calibration parameters; (iv) incorporation of degree 1 coefficients estimated with independent techniques; (v) usage of state-of-the-art background models to de-alias GRACE data from rapid mass transport signals (this includes the EOT11a model of ocean tides and the latest release of the AOD1B product describing

  5. Modeling the transport pathways of harmful algal blooms in the Iberian coast.

    PubMed

    Pinto, L; Mateus, M; Silva, A

    2016-03-01

    The prediction of the path of harmful algal blooms (HABs) along the coast can be achieved using numerical models of ocean circulation in order to reproduce the hydrodynamics of the study area. With this setting, our work aimed at the (1) study of key past events to evaluate the model ability to reproduce the transport pathways of blooms along the Iberian coast, and (2) to assess the relevance of such strictly physical approach. The simulations described here rely on the advection of lagrangian elements after a point release in a hypothetical location for bloom initiation, and the subsequent assessment of the influence of the surface currents transport on the extent of the bloom. Five events were simulated, accounting for blooms of Gymnodinium catenatum, Dinophysis acuminata and Pseudo-nitzschia spp. Model results were compared with field data from the National HAB monitoring program, and were used to evaluate some hypothesis in their interpretation. The effort compiled in this paper, though focused on the transport and dispersion of HAB (after bloom detection), was a critical step toward an integrative forecasting system to determine potential HAB impacted areas, also addressed in this Special Issue.

  6. Effect of dissolved organic carbon on the transport and attachment behaviors of Cryptosporidium parvum oocysts and carboxylate-modified microspheres advected through temperate humic and tropical volcanic agricultural soil.

    PubMed

    Mohanram, Arvind; Ray, Chittaranjan; Metge, David W; Barber, Larry B; Ryan, Joseph N; Harvey, Ronald W

    2012-02-21

    Transport of Cryptosporidium parvum oocysts and microspheres in two disparate (a clay- and Fe-rich, volcanic and a temperate, humic) agricultural soils were studied in the presence and absence of 100 mg L(-1) of sodium dodecyl benzene sulfonate (SDBS), and Suwannee River Humic Acid (SRHA) at pH 5.0-6.0. Transport of carboxylate-modified, 1.8 μm microspheres in soil columns was highly sensitive to the nature of the dissolved organic carbon (DOC), whereas oocysts transport was more affected by soil mineralogy. SDBS increased transport of microspheres from 48% to 87% through the tropical soil and from 43% to 93% in temperate soil. In contrast, SRHA reduced transport of microspheres from 48% to 28% in tropical soil and from 43% to 16% in temperate soil. SDBS also increased oocysts transport through the temperate soil 5-fold, whereas no oocyst transport was detected in tropical soil. SRHA had only a nominal effect in increasing oocysts transport in tropical soil, but caused a 6-fold increase in transport through the temperate soil. Amendments of only 4 mg L(-1) SRHA and SDBS decreased oocyst hydrophobicity from 66% to 20% and from 66% to 5%, respectively. However, SDBS increased microsphere hydrophobicity from 16% to 33%. Soil fines, which includes clays, and SRHA, both caused the oocysts zeta potential (ζ) to become more negative, but caused the highly hydrophilic microspheres to become less negatively charged. The disparate behaviors of the two colloids in the presence of an ionic surfactant and natural organic matter suggest that microspheres may not be suitable surrogates for oocysts in certain types of soils. These results indicate that whether or not DOC inhibits or promotes transport of oocysts and microspheres in agricultural soils and by how much, depends not only on the surface characteristics of the colloid, but the nature of the DOC and the soil mineralogy.

  7. Ozone formation during an episode over Europe: A 3-D chemical/transport model simulation

    NASA Technical Reports Server (NTRS)

    Berntsen, Terje; Isaksen, Ivar S. A.

    1994-01-01

    A 3-D regional photochemical tracer/transport model for Europe and the Eastern Atlantic has been developed based on the NASA/GISS CTM. The model resolution is 4x5 degrees latitude and longitude with 9 layers in the vertical (7 in the troposphere). Advective winds, convection statistics and other meteorological data from the NASA/GISS GCM are used. An extensive gas-phase chemical scheme based on the scheme used in our global 2D model has been incorporated in the 3D model. In this work ozone formation in the troposphere is studied with the 3D model during a 5 day period starting June 30. Extensive local ozone production is found and the relationship between the source regions and the downwind areas are discussed. Variations in local ozone formation as a function of total emission rate, as well as the composition of the emissions (HC/NO(x)) ratio and isoprene emissions) are elucidated. An important vertical transport process in the troposphere is by convective clouds. The 3D model includes an explicit parameterization of this process. It is shown that this process has significant influence on the calculated surface ozone concentrations.

  8. Symposium on unsaturated flow and transport modeling

    SciTech Connect

    Arnold, E.M.; Gee, G.W.; Nelson, R.W.

    1982-09-01

    This document records the proceedings of a symposium on flow and transport processes in partially saturated groundwater systems, conducted at the Battelle Seattle Research Center on March 22-24, 1982. The symposium was sponsored by the US Nuclear Regulatory Commission for the purpose of assessing the state-of-the-art of flow and transport modeling for use in licensing low-level nuclear waste repositories in partially saturated zones. The first day of the symposium centered around research in flow through partially saturated systems. Papers were presented with the opportunity for questions following each presentation. In addition, after all the talks, a formal panel discussion was held during which written questions were addressed to the panel of the days speakers. The second day of the Symposium was devoted to solute and contaminant transport in partially saturated media in an identical format. Individual papers are abstracted.

  9. Sensitivity of Age-of-Air Calculations to the Choice of Advection Scheme

    NASA Technical Reports Server (NTRS)

    Eluszkiewicz, Janusz; Hemler, Richard S.; Mahlman, Jerry D.; Bruhwiler, Lori; Takacs, Lawrence L.

    2000-01-01

    The age of air has recently emerged as a diagnostic of atmospheric transport unaffected by chemical parameterizations, and the features in the age distributions computed in models have been interpreted in terms of the models' large-scale circulation field. This study shows, however, that in addition to the simulated large-scale circulation, three-dimensional age calculations can also be affected by the choice of advection scheme employed in solving the tracer continuity equation, Specifically, using the 3.0deg latitude X 3.6deg longitude and 40 vertical level version of the Geophysical Fluid Dynamics Laboratory SKYHI GCM and six online transport schemes ranging from Eulerian through semi-Lagrangian to fully Lagrangian, it will be demonstrated that the oldest ages are obtained using the nondiffusive centered-difference schemes while the youngest ages are computed with a semi-Lagrangian transport (SLT) scheme. The centered- difference schemes are capable of producing ages older than 10 years in the mesosphere, thus eliminating the "young bias" found in previous age-of-air calculations. At this stage, only limited intuitive explanations can be advanced for this sensitivity of age-of-air calculations to the choice of advection scheme, In particular, age distributions computed online with the National Center for Atmospheric Research Community Climate Model (MACCM3) using different varieties of the SLT scheme are substantially older than the SKYHI SLT distribution. The different varieties, including a noninterpolating-in-the-vertical version (which is essentially centered-difference in the vertical), also produce a narrower range of age distributions than the suite of advection schemes employed in the SKYHI model. While additional MACCM3 experiments with a wider range of schemes would be necessary to provide more definitive insights, the older and less variable MACCM3 age distributions can plausibly be interpreted as being due to the semi-implicit semi

  10. Molecular modeling of auxin transport inhibitors

    SciTech Connect

    Gardner, G.; Black-Schaefer, C.; Bures, M.G. )

    1990-05-01

    Molecular modeling techniques have been used to study the chemical and steric properties of auxin transport inhibitors. These bind to a specific site on the plant plasma membrane characterized by its affinity for N-1-naphthylphthalamic acid (NPA). A three-dimensional model was derived from critical features of ligands for the NPA receptor, and a suggested binding conformation is proposed. This model, along with three-dimensional structural searching techniques, was then used to search the Abbott corporate database of chemical structures. Of the 467 compounds that satisfied the search criteria, 77 representative molecules were evaluated for their ability to compete for ({sup 3}H)NPA binding to corn microsomal membranes. Nineteen showed activity that ranged from 16 to 85% of the maximum NPA binding. Four of the most active of these, from chemical classes not included in the original compound set, also inhibited polar auxin transport through corn coleoptile sections.

  11. A Radiative Transport Model for Blazars

    NASA Astrophysics Data System (ADS)

    Lewis, Tiffany; Justin, Finke; Becker, Peter A.

    2017-01-01

    Blazars are observed across the electromagnetic spectrum, often with strong variability throughout. The underlying electron distribution associated with the observed emission is typically not computed from first principles. We start from first-principles to build up a transport model, whose solution is the electron distribution, rather than assuming a convenient functional form. Our analytical transport model considers shock acceleration, adiabatic expansion, stochastic acceleration, Bohm diffusion, and synchrotron radiation. We use this solution to generate predictions for the X-ray spectrum and time lags, and compare the results with data products from BeppoSAX observations of X-ray flares from Mrk 421. This new self-consistent model provides an unprecedented view into the jet physics at play in this source, especially the strength of the shock and stochastic acceleration components and the size of the acceleration region.More recently, we augmented the transport model to incorporate Compton scattering, including Klein-Nishina effects. In this case, an analytical solution cannot be derived, and therefore we obtain the steady-state electron distribution computationally. We compare the resulting radiation spectrum with multi-wavelength data for 3C 279. We show that our new Compton + synchrotron blazar model is the first to successfully fit the FermiLAT gamma-ray data for this source based on a first-principles physical calculation.

  12. A Radiative Transport Model for Blazars

    NASA Astrophysics Data System (ADS)

    Lewis, Tiffany; Finke, Justin; Becker, Peter

    2017-01-01

    Blazars are observed across the electromagnetic spectrum, often with strong variability throughout. We start from first-principles to build up a transport model, whose solution is the electron distribution, rather than assuming a convenient functional form. Our analytical transport model considers shock acceleration, adiabatic expansion, stochastic acceleration, Bohm diffusion, and synchrotron radiation. We use this solution to give predictions for the X-ray spectrum and time lags, comparing the results with BeppoSAX observations of X-ray flares from Mrk 421. This new self-consistent model provides an unprecedented view into the jet physics at play in this source, especially the strength of the shock and stochastic acceleration components and the size of the acceleration region. More recently, we augmented the transport model to incorporate Compton scattering, including Klein-Nishina effects. Here, an analytical solution cannot be derived. Therefore we obtain the steady-state electron distribution computationally. We compare the resulting radiation spectrum with multi-wavelength data for 3C 279. We show that our new Compton + synchrotron blazar model is the first to successfully fit the FermiLAT gamma-ray data for this source based on a first-principles physical calculation.

  13. Application of a Particle Method to the Advection-Diffusion-Reaction Equation

    NASA Astrophysics Data System (ADS)

    Paster, A.; Bolster, D.; Benson, D. A.

    2012-12-01

    A reaction between two chemical species can only happen if molecules collide and react. Thus, the mixing of a system can become a limiting factor in the onset of reaction. Solving for reaction rate in a well-mixed system is typically a straightforward task. However, when incomplete mixing kicks in, obtaining a solution becomes more challenging. Since reaction can only happen in regions where both reactants co-exist, the incomplete mixing may slow down the reaction rate, when compared to a well-mixed system. The effect of incomplete mixing upon reaction is a highly important aspect of various processes in natural and engineered systems, ranging from mineral precipitation in geological formations to groundwater remediation in aquifers. We study a relatively simple system with a bi-molecular irreversible kinetic reaction A+B → Ø where the underlying transport of reactants is governed by an advection-diffusion equation, and the initial concentrations are given in terms of an average and a perturbation. Such a system does not have an analytical solution to date, even for the zero advection case. We model the system by a Monte Carlo particle tracking method, where particles represent some reactant mass. In this method, diffusion is modeled by a random walk of the particles, and reaction is modeled by annihilation of particles. The probability of the annihilation is proportional to the reaction rate constant and the probability density associated with particle co-location. We study the numerical method in depth, characterizing typical numerical errors and time step restrictions. In particular, we show that the numerical method converges to the advection-diffusion-reaction equation at the limit Δt →0. We also rigorously derive the relationship between the initial number of particles in the system and the initial concentrations perturbations represented by that number. We then use the particle simulations of zero-advection system to demonstrate the well

  14. Numerical modelling of ion transport in flames

    NASA Astrophysics Data System (ADS)

    Han, Jie; Belhi, Memdouh; Bisetti, Fabrizio; Mani Sarathy, S.

    2015-11-01

    This paper presents a modelling framework to compute the diffusivity and mobility of ions in flames. The (n, 6, 4) interaction potential is adopted to model collisions between neutral and charged species. All required parameters in the potential are related to the polarizability of the species pair via semi-empirical formulas, which are derived using the most recently published data or best estimates. The resulting framework permits computation of the transport coefficients of any ion found in a hydrocarbon flame. The accuracy of the proposed method is evaluated by comparing its predictions with experimental data on the mobility of selected ions in single-component neutral gases. Based on this analysis, the value of a model constant available in the literature is modified in order to improve the model's predictions. The newly determined ion transport coefficients are used as part of a previously developed numerical approach to compute the distribution of charged species in a freely propagating premixed lean CH4/O2 flame. Since a significant scatter of polarizability data exists in the literature, the effects of changes in polarizability on ion transport properties and the spatial distribution of ions in flames are explored. Our analysis shows that changes in polarizability propagate with decreasing effect from binary transport coefficients to species number densities. We conclude that the chosen polarizability value has a limited effect on the ion distribution in freely propagating flames. We expect that the modelling framework proposed here will benefit future efforts in modelling the effect of external voltages on flames. Supplemental data for this article can be accessed at http://dx.doi.org/10.1080/13647830.2015.1090018.

  15. Mesoscopic Modeling of Reactive Transport Processes

    NASA Astrophysics Data System (ADS)

    Kang, Q.; Chen, L.; Deng, H.

    2012-12-01

    Reactive transport processes involving precipitation and/or dissolution are pervasive in geochemical, biological and engineered systems. Typical examples include self-assembled patterns such as Liesegang rings or bands, cones of stalactites in limestones caves, biofilm growth in aqueous environment, formation of mineral deposits in boilers and heat exchangers, uptake of toxic metal ions from polluted water by calcium carbonate, and mineral trapping of CO2. Compared to experimental studies, a numerical approach enables a systematic study of the reaction kinetics, mass transport, and mechanisms of nucleation and crystal growth, and hence provides a detailed description of reactive transport processes. In this study, we enhance a previously developed lattice Boltzmann pore-scale model by taking into account the nucleation process, and develop a mesoscopic approach to simulate reactive transport processes involving precipitation and/or dissolution of solid phases. The model is then used to simulate the formation of Liesegang precipitation patterns and investigate the effects of gel on the morphology of the precipitates. It is shown that this model can capture the porous structures of the precipitates and can account for the effects of the gel concentration and material. A wide range of precipitation patterns is predicted under different gel concentrations, including regular bands, treelike patterns, and for the first time with numerical models, transition patterns from regular bands to treelike patterns. The model is also applied to study the effect of secondary precipitate on the dissolution of primary mineral. Several types of dissolution and precipitation processes are identified based on the morphology and structures of the precipitates and on the extent to which the precipitates affect the dissolution of the primary mineral. Finally the model is applied to study the formation of pseudomorph. It is demonstrated for the first time by numerical simulation that a

  16. Enhancement of microbial motility due to advection-dependent nutrient absorption

    NASA Astrophysics Data System (ADS)

    Condat, Carlos A.; di Salvo, Mario E.

    2014-03-01

    In their classical work, Berg and Purcell [Biophys. J. 20, 193 (1977)] concluded that the motion of a small microorganism would not significantly increase its nutrient uptake rate, if the nutrient consisted of high diffusivity particles. As a result, it has been generally assumed that nutrient transport to small microorganisms such as bacteria is dominated by molecular diffusion and that swimming and feeding currents play a negligible role. On the other hand, recent studies have found that flagellar motion may increase advection-mediated uptake. We formulate a model to investigate the hypothesis that fast-moving microbes may enhance their swimming speed by taking advantage of advection to increase nutrient absorption. Surprisingly, using realistic parameter values for bacteria and algae, we find that even modest increases in nutrient absorption may lead to a significant increase of the microbial speed. We also show that, optimally, the rate of effective energy transfer to the microbial propulsion system should be proportional to the speed for slow motion, while it should be proportional to a power of the speed close to two for fast motion. We are grateful to SECyT-UNC and CONICET, Argentina, for financial support.

  17. An adaptive multiresolution gradient-augmented level set method for advection problems

    NASA Astrophysics Data System (ADS)

    Schneider, Kai; Kolomenskiy, Dmitry; Nave, Jean-Chtristophe

    2014-11-01

    Advection problems are encountered in many applications, such as transport of passive scalars modeling pollution or mixing in chemical engineering. In some problems, the solution develops small-scale features localized in a part of the computational domain. If the location of these features changes in time, the efficiency of the numerical method can be significantly improved by adapting the partition dynamically to the solution. We present a space-time adaptive scheme for solving advection equations in two space dimensions. The third order accurate gradient-augmented level set method using a semi-Lagrangian formulation with backward time integration is coupled with a point value multiresolution analysis using Hermite interpolation. Thus locally refined dyadic spatial grids are introduced which are efficiently implemented with dynamic quad-tree data structures. For adaptive time integration, an embedded Runge-Kutta method is employed. The precision of the new fully adaptive method is analysed and speed up of CPU time and memory compression with respect to the uniform grid discretization are reported.

  18. A two-dimensional, time-dependent model of suspended sediment transport and bed reworking for continental shelves

    USGS Publications Warehouse

    Harris, C.K.; Wiberg, P.L.

    2001-01-01

    A two-dimensional, time-dependent solution to the transport equation is formulated to account for advection and diffusion of sediment suspended in the bottom boundary layer of continental shelves. This model utilizes a semi-implicit, upwind-differencing scheme to solve the advection-diffusion equation across a two-dimensional transect that is configured so that one dimension is the vertical, and the other is a horizontal dimension usually aligned perpendicular to shelf bathymetry. The model calculates suspended sediment concentration and flux; and requires as input wave properties, current velocities, sediment size distributions, and hydrodynamic sediment properties. From the calculated two-dimensional suspended sediment fluxes, we quantify the redistribution of shelf sediment, bed erosion, and deposition for several sediment sizes during resuspension events. The two-dimensional, time-dependent approach directly accounts for cross-shelf gradients in bed shear stress and sediment properties, as well as transport that occurs before steady-state suspended sediment concentrations have been attained. By including the vertical dimension in the calculations, we avoid depth-averaging suspended sediment concentrations and fluxes, and directly account for differences in transport rates and directions for fine and coarse sediment in the bottom boundary layer. A flux condition is used as the bottom boundary condition for the transport equation in order to capture time-dependence of the suspended sediment field. Model calculations demonstrate the significance of both time-dependent and spatial terms on transport and depositional patterns on continental shelves. ?? 2001 Elsevier Science Ltd. All rights reserved.

  19. MODELING TRANSPORT IN THE DOWN GRADIENT PORTION OF THE 200-PO-1 OPERABLE UNIT AT THE HANFORD SITE

    SciTech Connect

    MEHTA S; ALY AH; MILLER CW; MAYENNA A

    2009-12-03

    Remedial Investigations are underway for the 200-PO-l Operable Unit (OU) at the U.S. Department of Energy's Hanford Site in Washington State. To support the baseline risk assessment and evaluation of remedial alternatives, fate and transport modeling is being conducted to predict the future concentration of contaminants of potential concern in the 200-PO-1 OU. This study focuses on modeling the 'down gradient' transport of those contaminants that migrate beyond the 3-D model domain selected for performing detailed 'source area' modeling within the 200-PO-1 OU. The down gradient portion is defined as that region of the 200-PO-1 OU that is generally outside the 200 Area (considered 'source area') of the Hanford Site. A 1-D transport model is developed for performing down gradient contaminant fate and transport modeling. The 1-D transport model is deemed adequate based on the inferred transport pathway of tritium in the past and the observation that most of the contaminant mass remains at or near the water table within the unconfined aquifer of the Hanford Formation and the Cold-Creek/Pre-Missoula Gravel unit. The Pipe Pathway feature of the GoldSim software is used to perform the calculations. The Pipe Pathway uses a Laplace transform approach to provide analytical solutions to a broad range of advection-dominated mass transport systems involving one-dimensional advection, longitudinal dispersion, retardation, decay and ingrowth, and exchanges with immobile storage zones. Based on the historical concentration distribution data for the extensive tritium plume in this area, three Pipe Pathways are deemed adequate for modeling transport of contaminants. Each of these three Pipe Pathways is discretized into several zones, based on the saturated thickness variation in the unconfined aquifer and the location of monitoring wells used for risk assessment calculation. The mass fluxes of contaminants predicted to exit the source area model domain are used as an input to the

  20. Thermo-chemical convection in planetary mantles: advection methods and magma ocean overturn simulations

    NASA Astrophysics Data System (ADS)

    Plesa, A.-C.; Tosi, N.; Hüttig, C.

    2012-04-01

    Thermal and chemical convection in planetary mantles are the most dominant dynamical processes influencing the thermal and geological evolution of a planet. After the planetary formation, convection in the interior is one of the most prominent processes being responsible for the heat transport efficiency, the interior structure, the magnetic field generation and the geological structures at the surface of a planet such as volcanoes, rifts and others. The slow creep of the silicate materials that make up the mantle of terrestrial planets (i.e. Mercury, Venus, the Earth and Mars) is driven by a combination of thermal and compositional buoyancy. On the one hand, the primordial heat accumulated after accretion and core formation and the heat released by the decay of radiogenic isotopes are transported from the interior to the surface by thermal convection. This process involves the transfer of heat both via diffusion, which occurs mainly across thermal boundary layers, and advection due to fluid motion in the bulk of the mantle. On the other hand, density anomalies of non-thermal origin associated with chemical (i.e. compositional) heterogeneities provide an additional source of buoyancy that actively contributes to the transport of energy and mass. In the present work we discuss the modeling of active compositional fields in the framework of solid-state mantle convection using the 3D spherical/2D cylindrical code Gaia [1, 2]. Numerical methods for the advection of active compositional fields fall in two main categories [3, 4]. They are based either on a fixed computational grid (Eulerian methods) or on evolving grids or moving particles (Lagrangian methods). We compare an Eulerian method based on double-diffusive convection against a Lagrangian, particle-based method. Though straightforward, the first method generally suffers from non-negligible numerical diffusion and demands then the use of grids with a high resolution. Moreover, its accuracy can substantially

  1. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone.

    PubMed

    Bachand, P A M; Bachand, S; Fleck, J; Anderson, F; Windham-Myers, L

    2014-06-15

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flow rates and tracer concentrations at wetland inflows and outflows. We used two ideal reactor model solutions, a continuous flow stirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these non-ideal agricultural wetlands in which check ponds are in series. Using a flux model, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment-water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemical mechanisms affecting dissolved constituent cycling in the root zone. In addition, our understanding of

  2. Manuscript title: Evaluating the two-source energy balance model using local thermal and surface flux observations in a strongly advective irrigated agricultural area

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Application and validation of many thermal remote sensing-based energy balance models involve the use of local meteorological inputs of incoming solar radiation, wind speed and air temperature as well as accurate land surface temperature (LST), vegetation cover and surface flux measurements. For ...

  3. Fractures as Advective Conduits at the Earth Atmosphere Interface

    NASA Astrophysics Data System (ADS)

    Dragila, M. I.; Weisbrod, N.; Nachshon, U.; Kamai, T.

    2012-12-01

    Understanding gas exchange between the Earth's upper crust and the atmosphere is vital and necessary because this phenomenon controls to a large extent many important processes including, the water cycle, agricultural activities, greenhouse gas emissions and more. From a hydrological aspect, water vapor transport is an extremely important process related to Earth-atmosphere gas exchange because it affects above ground water vapor concentration, soil water content and soil salinity. Traditionally, diffusion was considered the main mechanism of gas exchange between the atmosphere and vadose zone, driven by gas concentration gradients. While this assumption may be correct for many porous media, our laboratory and field-scale studies have shown that advective gas transport mechanisms are governing these fluxes in fractured rocks and cracked soils. Convection driven by thermal gradients (free convection) and wind induced (forced convection) were explored and both were found to play a major role in Earth-atmosphere gas exchange. Long-term laboratory experiments using fracture simulators in a customized climate controlled laboratory have shown that thermal convection occurs when nighttime thermal conditions prevail. This convective venting significantly enhances evaporation and subsequently salt precipitation on the fracture walls. Experiment results were used to develop an empirical relationship between temperature gradients, fracture aperture and convective gas flux through the fracture. Theoretical calculations show that thermal convection is indeed likely to play a major role in evaporation from fractures and can explain enhanced salt accumulation observed in surface-exposed fractures. Long-term field measurements, carried out continuously for 5+ years in a single fracture in the Israeli Negev Desert, verified the development of air convection cycles of 10-18 hours duration on a daily basis, with a peak in both convective flux and duration during the winter. During

  4. Comparative assessment of continuum-scale models of bimolecular reactive transport in porous media under pre-asymptotic conditions

    NASA Astrophysics Data System (ADS)

    Porta, G. M.; Ceriotti, G.; Thovert, J.-F.

    2016-02-01

    We compare the ability of various continuum-scale models to reproduce the key features of a transport setting associated with a bimolecular reaction taking place in the fluid phase and numerically simulated at the pore-scale level in a disordered porous medium. We start by considering a continuum-scale formulation which results from formal upscaling of this reactive transport process by means of volume averaging. The resulting (upscaled) continuum-scale system of equations includes nonlocal integro-differential terms and the effective parameters embedded in the model are quantified directly through computed pore-scale fluid velocity and pore space geometry attributes. The results obtained through this predictive model formulation are then compared against those provided by available effective continuum models which require calibration through parameter estimation. Our analysis considers two models recently proposed in the literature which are designed to embed incomplete mixing arising from the presence of fast reactions under advection-dominated transport conditions. We show that best estimates of the parameters of these two models heavily depend on the type of data employed for model calibration. Our upscaled nonlocal formulation enables us to reproduce most of the critical features observed through pore-scale simulation without any model calibration. As such, our results clearly show that embedding into a continuum-scale model the information content associated with pore-scale geometrical features and fluid velocity yields improved interpretation of typically available continuum-scale transport observations.

  5. Atmospheric water vapor transport: Estimation of continental precipitation recycling and parameterization of a simple climate model. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Brubaker, Kaye L.; Entekhabi, Dara; Eagleson, Peter S.

    1991-01-01

    The advective transport of atmospheric water vapor and its role in global hydrology and the water balance of continental regions are discussed and explored. The data set consists of ten years of global wind and humidity observations interpolated onto a regular grid by objective analysis. Atmospheric water vapor fluxes across the boundaries of selected continental regions are displayed graphically. The water vapor flux data are used to investigate the sources of continental precipitation. The total amount of water that precipitates on large continental regions is supplied by two mechanisms: (1) advection from surrounding areas external to the region; and (2) evaporation and transpiration from the land surface recycling of precipitation over the continental area. The degree to which regional precipitation is supplied by recycled moisture is a potentially significant climate feedback mechanism and land surface-atmosphere interaction, which may contribute to the persistence and intensification of droughts. A simplified model of the atmospheric moisture over continents and simultaneous estimates of regional precipitation are employed to estimate, for several large continental regions, the fraction of precipitation that is locally derived. In a separate, but related, study estimates of ocean to land water vapor transport are used to parameterize an existing simple climate model, containing both land and ocean surfaces, that is intended to mimic the dynamics of continental climates.

  6. Turbulent transport models for scramjet flowfields

    NASA Technical Reports Server (NTRS)

    Sindir, M. M.; Harsha, P. T.

    1984-01-01

    Turbulence modeling approaches were examined from the standpoint of their capability to predict the complex flowfield features observed in scramjet combustions. Thus, for example, the accuracy of each turbulence model, with respect to the prediction of recirculating flows, was examined. It was observed that for large diameter ratio axisymmetric sudden expansion flows, a choice of turbulence model was not critical because of the domination of their flowfields by pressure forces. For low diameter ratio axisymmetric sudden expansions and planar backward-facing steps flows, where turbulent shear stresses are of greater significance, the algebraic Reynolds stress approach, modified to increase its sensitivity to streamline curvature, was found to provide the best results. Results of the study also showed that strongly swirling flows provide a stringent test of turbulence model assumptions. Thus, although flows with very high swirl are not of great practical interest, they are useful for turbulence model development. Finally, it was also noted that numerical flowfields solution techniques have a strong interrelation with turbulence models, particularly with the turbulent transport models which involve source-dominated transport equations.

  7. Environmental fate and transport of chemical signatures from buried landmines -- Screening model formulation and initial simulations

    SciTech Connect

    Phelan, J.M.; Webb, S.W.

    1997-06-01

    The fate and transport of chemical signature molecules that emanate from buried landmines is strongly influenced by physical chemical properties and by environmental conditions of the specific chemical compounds. Published data have been evaluated as the input parameters that are used in the simulation of the fate and transport processes. A one-dimensional model developed for screening agricultural pesticides was modified and used to simulate the appearance of a surface flux above a buried landmine, estimate the subsurface total concentration, and show the phase specific concentrations at the ground surface. The physical chemical properties of TNT cause a majority of the mass released to the soil system to be bound to the solid phase soil particles. The majority of the transport occurs in the liquid phase with diffusion and evaporation driven advection of soil water as the primary mechanisms for the flux to the ground surface. The simulations provided herein should only be used for initial conceptual designs of chemical pre-concentration subsystems or complete detection systems. The physical processes modeled required necessary simplifying assumptions to allow for analytical solutions. Emerging numerical simulation tools will soon be available that should provide more realistic estimates that can be used to predict the success of landmine chemical detection surveys based on knowledge of the chemical and soil properties, and environmental conditions where the mines are buried. Additional measurements of the chemical properties in soils are also needed before a fully predictive approach can be confidently applied.

  8. Modeling Bimolecular Reactions and Transport in Porous Media Via Particle Tracking

    SciTech Connect

    Dong Ding; David Benson; Amir Paster; Diogo Bolster

    2012-01-01

    We use a particle-tracking method to simulate several one-dimensional bimolecular reactive transport experiments. In this numerical method, the reactants are represented by particles: advection and dispersion dominate the flow, and molecular diffusion dictates, in large part, the reactions. The particle/particle reactions are determined by a combination of two probabilities dictated by the physics of transport and energetics of reaction. The first is that reactant particles occupy the same volume over a short time interval. The second is the conditional probability that two collocated particles favorably transform into a reaction. The first probability is a direct physical representation of the degree of mixing in an advancing displacement front, and as such lacks empirical parameters except for the user-defined number of particles. This number can be determined analytically from concentration autocovariance, if this type of data is available. The simulations compare favorably to two physical experiments. In one, the concentration of product, 1,2-naphthoquinoe-4-aminobenzene (NQAB) from reaction between 1,2-naphthoquinone-4-sulfonic acid (NQS) and aniline (AN), was measured at the outflow of a column filled with glass beads at different times. In the other, the concentration distribution of reactants (CuSO_4 and EDTA^{4-}) and products (CuEDTA^{4-}) were quantified by snapshots of transmitted light through a column packed with cryloite sand. The thermodynamic rate coefficient in the latter experiment was 10^7 times greater than the former experiment, making it essentially instantaneous. When compared to the solution of the advection-dispersion-reaction equation (ADRE) with the well-mixed reaction coefficient, the experiments and the particle-tracking simulations showed on the order of 20% to 40% less overall product, which is attributed to poor mixing. The poor mixing also leads to higher product concentrations on the edges of the mixing zones, which the particle

  9. Variational multiscale models for charge transport

    PubMed Central

    Wei, Guo-Wei; Zheng, Qiong; Chen, Zhan; Xia, Kelin

    2012-01-01

    This work presents a few variational multiscale models for charge transport in complex physical, chemical and biological systems and engineering devices, such as fuel cells, solar cells, battery cells, nanofluidics, transistors and ion channels. An essential ingredient of the present models, introduced in an earlier paper (Bulletin of Mathematical Biology, 72, 1562-1622, 2010), is the use of differential geometry theory of surfaces as a natural means to geometrically separate the macroscopic domain from the microscopic domain, meanwhile, dynamically couple discrete and continuum descriptions. Our main strategy is to construct the total energy functional of a charge transport system to encompass the polar and nonpolar free energies of solvation, and chemical potential related energy. By using the Euler-Lagrange variation, coupled Laplace-Beltrami and Poisson-Nernst-Planck (LB-PNP) equations are derived. The solution of the LB-PNP equations leads to the minimization of the total free energy, and explicit profiles of electrostatic potential and densities of charge species. To further reduce the computational complexity, the Boltzmann distribution obtained from the Poisson-Boltzmann (PB) equation is utilized to represent the densities of certain charge species so as to avoid the computationally expensive solution of some Nernst-Planck (NP) equations. Consequently, the coupled Laplace-Beltrami and Poisson-Boltzmann-Nernst-Planck (LB-PBNP) equations are proposed for charge transport in heterogeneous systems. A major emphasis of the present formulation is the consistency between equilibrium LB-PB theory and non-equilibrium LB-PNP theory at equilibrium. Another major emphasis is the capability of the reduced LB-PBNP model to fully recover the prediction of the LB-PNP model at non-equilibrium settings. To account for the fluid impact on the charge transport, we derive coupled Laplace-Beltrami, Poisson-Nernst-Planck and Navier-Stokes equations from the variational principle

  10. Verification of Advective Bar Elements Implemented in the Aria Thermal Response Code.

    SciTech Connect

    Mills, Brantley

    2016-01-01

    A verification effort was undertaken to evaluate the implementation of the new advective bar capability in the Aria thermal response code. Several approaches to the verification process were taken : a mesh refinement study to demonstrate solution convergence in the fluid and the solid, visually examining the mapping of the advective bar element nodes to the surrounding surfaces, and a comparison of solutions produced using the advective bars for simple geometries with solutions from commercial CFD software . The mesh refinement study has shown solution convergence for simple pipe flow in both temperature and velocity . Guidelines were provided to achieve appropriate meshes between the advective bar elements and the surrounding volume. Simulations of pipe flow using advective bars elements in Aria have been compared to simulations using the commercial CFD software ANSYS Fluent (r) and provided comparable solutions in temperature and velocity supporting proper implementation of the new capability. Verification of Advective Bar Elements iv Acknowledgements A special thanks goes to Dean Dobranich for his guidance and expertise through all stages of this effort . His advice and feedback was instrumental to its completion. Thanks also goes to Sam Subia and Tolu Okusanya for helping to plan many of the verification activities performed in this document. Thank you to Sam, Justin Lamb and Victor Brunini for their assistance in resolving issues encountered with running the advective bar element model. Finally, thanks goes to Dean, Sam, and Adam Hetzler for reviewing the document and providing very valuable comments.

  11. Tracer transport by the diabatic circulation deduced from satellite observations

    NASA Technical Reports Server (NTRS)

    Solomon, S.; Kiehl, J. T.; Garcia, R. R.; Grose, W.

    1986-01-01

    Nimbus-7 sensor data were used to track the diabatic circulation in the stratosphere to study the advective transport of CH4 and N2O as tracer species. Advective transport by the mean circulation was found to be a function of the temperature field and associated deviations from radiative equilibrium. A photochemical model was applied to account for the disappearance of the tracer species from the stratosphere. Comparisons between the SAMS data and modeling on the basis of the chemical loss rates of the tracers and the LIMS circulation data showed that the model predictions underestimated the resident abundances, although the global distributions and circulations exhibited a good match.

  12. Modelling sediment clasts transport during landscape evolution

    NASA Astrophysics Data System (ADS)

    Carretier, Sébastien; Martinod, Pierre; Reich, Martin; Godderis, Yves

    2016-03-01

    Over thousands to millions of years, the landscape evolution is predicted by models based on fluxes of eroded, transported and deposited material. The laws describing these fluxes, corresponding to averages over many years, are difficult to prove with the available data. On the other hand, sediment dynamics are often tackled by studying the distribution of certain grain properties in the field (e.g. heavy metals, detrital zircons, 10Be in gravel, magnetic tracers). There is a gap between landscape evolution models based on fluxes and these field data on individual clasts, which prevent the latter from being used to calibrate the former. Here we propose an algorithm coupling the landscape evolution with mobile clasts. Our landscape evolution model predicts local erosion, deposition and transfer fluxes resulting from hillslope and river processes. Clasts of any size are initially spread in the basement and are detached, moved and deposited according to probabilities using these fluxes. Several river and hillslope laws are studied. Although the resulting mean transport rate of the clasts does not depend on the time step or the model cell size, our approach is limited by the fact that their scattering rate is cell-size-dependent. Nevertheless, both their mean transport rate and the shape of the scattering-time curves fit the predictions. Different erosion-transport laws generate different clast movements. These differences show that studying the tracers in the field may provide a way to establish these laws on the hillslopes and in the rivers. Possible applications include the interpretation of cosmogenic nuclides in individual gravel deposits, provenance analyses, placers, sediment coarsening or fining, the relationship between magnetic tracers in rivers and the river planform, and the tracing of weathered sediment.

  13. Moving from Batch to Field Using the RT3D Reactive Transport Modeling System

    NASA Astrophysics Data System (ADS)

    Clement, T. P.; Gautam, T. R.

    2002-12-01

    The public domain reactive transport code RT3D (Clement, 1997) is a general-purpose numerical code for solving coupled, multi-species reactive transport in saturated groundwater systems. The code uses MODFLOW to simulate flow and several modules of MT3DMS to simulate the advection and dispersion processes. RT3D employs the operator-split strategy which allows the code solve the coupled reactive transport problem in a modular fashion. The coupling between reaction and transport is defined through a separate module where the reaction equations are specified. The code supports a versatile user-defined reaction option that allows users to define their own reaction system through a Fortran-90 subroutine, known as the RT3D-reaction package. Further a utility code, known as BATCHRXN, allows the users to independently test and debug their reaction package. To analyze a new reaction system at a batch scale, users should first run BATCHRXN to test the ability of their reaction package to model the batch data. After testing, the reaction package can simply be ported to the RT3D environment to study the model response under 1-, 2-, or 3-dimensional transport conditions. This paper presents example problems that demonstrate the methods for moving from batch to field-scale simulations using BATCHRXN and RT3D codes. The first example describes a simple first-order reaction system for simulating the sequential degradation of Tetrachloroethene (PCE) and its daughter products. The second example uses a relatively complex reaction system for describing the multiple degradation pathways of Tetrachloroethane (PCA) and its daughter products. References 1) Clement, T.P, RT3D - A modular computer code for simulating reactive multi-species transport in 3-Dimensional groundwater aquifers, Battelle Pacific Northwest National Laboratory Research Report, PNNL-SA-28967, September, 1997. Available at: http://bioprocess.pnl.gov/rt3d.htm.

  14. 3D Flow Visualization Using Texture Advection

    NASA Technical Reports Server (NTRS)

    Kao, David; Zhang, Bing; Kim, Kwansik; Pang, Alex; Moran, Pat (Technical Monitor)

    2001-01-01

    Texture advection is an effective tool for animating and investigating 2D flows. In this paper, we discuss how this technique can be extended to 3D flows. In particular, we examine the use of 3D and 4D textures on 3D synthetic and computational fluid dynamics flow fields.

  15. Predicting the sun's polar magnetic fields with a surface flux transport model

    SciTech Connect

    Upton, Lisa; Hathaway, David H. E-mail: lar0009@uah.edu

    2014-01-01

    The Sun's polar magnetic fields are directly related to solar cycle variability. The strength of the polar fields at the start (minimum) of a cycle determine the subsequent amplitude of that cycle. In addition, the polar field reversals at cycle maximum alter the propagation of galactic cosmic rays throughout the heliosphere in fundamental ways. We describe a surface magnetic flux transport model that advects the magnetic flux emerging in active regions (sunspots) using detailed observations of the near-surface flows that transport the magnetic elements. These flows include the axisymmetric differential rotation and meridional flow and the non-axisymmetric cellular convective flows (supergranules), all of which vary in time in the model as indicated by direct observations. We use this model with data assimilated from full-disk magnetograms to produce full surface maps of the Sun's magnetic field at 15 minute intervals from 1996 May to 2013 July (all of sunspot cycle 23 and the rise to maximum of cycle 24). We tested the predictability of this model using these maps as initial conditions, but with daily sunspot area data used to give the sources of new magnetic flux. We find that the strength of the polar fields at cycle minimum and the polar field reversals at cycle maximum can be reliably predicted up to 3 yr in advance. We include a prediction for the cycle 24 polar field reversal.

  16. Anomalous diffusion for bed load transport with a physically-based model

    NASA Astrophysics Data System (ADS)

    Fan, N.; Singh, A.; Foufoula-Georgiou, E.; Wu, B.

    2013-12-01

    Diffusion of bed load particles shows both normal and anomalous behavior for different spatial-temporal scales. Understanding and quantifying these different types of diffusion is important not only for the development of theoretical models of particle transport but also for practical purposes, e.g., river management. Here we extend a recently proposed physically-based model of particle transport by Fan et al. [2013] to further develop an Episodic Langevin equation (ELE) for individual particle motion which reproduces the episodic movement (start and stop) of sediment particles. Using the proposed ELE we simulate particle movements for a large number of uniform size particles, incorporating different probability distribution functions (PDFs) of particle waiting time. For exponential PDFs of waiting times, particles reveal ballistic motion in short time scales and turn to normal diffusion at long time scales. The PDF of simulated particle travel distances also shows a change in its shape from exponential to Gamma to Gaussian with a change in timescale implying different diffusion scaling regimes. For power-law PDF (with power - μ) of waiting times, the asymptotic behavior of particles at long time scales reveals both super-diffusion and sub-diffusion, however, only very heavy tailed waiting times (i.e. 1.0 < μ < 1.5) could result in sub-diffusion. We suggest that the contrast between our results and previous studies (for e.g., studies based on fractional advection-diffusion models of thin/heavy tailed particle hops and waiting times) results could be due the assumption in those studies that the hops are achieved instantaneously, but in reality, particles achieve their hops within finite times (as we simulate here) instead of instantaneously, even if the hop times are much shorter than waiting times. In summary, this study stresses on the need to rethink the alternative models to the previous models, such as, fractional advection-diffusion equations, for studying

  17. Generic reactive transport codes as flexible tools to integrate soil organic matter degradation models with water, transport and geochemistry in soils

    NASA Astrophysics Data System (ADS)

    Jacques, Diederik; Gérard, Fréderic; Mayer, Uli; Simunek, Jirka; Leterme, Bertrand

    2016-04-01

    A large number of organic matter degradation, CO2 transport and dissolved organic matter models have been developed during the last decades. However, organic matter degradation models are in many cases strictly hard-coded in terms of organic pools, degradation kinetics and dependency on environmental variables. The scientific input of the model user is typically limited to the adjustment of input parameters. In addition, the coupling with geochemical soil processes including aqueous speciation, pH-dependent sorption and colloid-facilitated transport are not incorporated in many of these models, strongly limiting the scope of their application. Furthermore, the most comprehensive organic matter degradation models are combined with simplified representations of flow and transport processes in the soil system. We illustrate the capability of generic reactive transport codes to overcome these shortcomings. The formulations of reactive transport codes include a physics-based continuum representation of flow and transport processes, while biogeochemical reactions can be described as equilibrium processes constrained by thermodynamic principles and/or kinetic reaction networks. The flexibility of these type of codes allows for straight-forward extension of reaction networks, permits the inclusion of new model components (e.g.: organic matter pools, rate equations, parameter dependency on environmental conditions) and in such a way facilitates an application-tailored implementation of organic matter degradation models and related processes. A numerical benchmark involving two reactive transport codes (HPx and MIN3P) demonstrates how the process-based simulation of transient variably saturated water flow (Richards equation), solute transport (advection-dispersion equation), heat transfer and diffusion in the gas phase can be combined with a flexible implementation of a soil organic matter degradation model. The benchmark includes the production of leachable organic matter

  18. Meeting in Turkey: WASP Transport Modeling and WASP Ecological Modeling

    EPA Science Inventory

    A combination of lectures, demonstrations, and hands-on excercises will be used to introduce pollutant transport modeling with the U.S. EPA's general water quality model, WASP (Water Quality Analysis Simulation Program). WASP features include a user-friendly Windows-based interfa...

  19. Meeting in Korea: WASP Transport Modeling and WASP Ecological Modeling

    EPA Science Inventory

    A combination of lectures, demonstrations, and hands-on excercises will be used to introduce pollutant transport modeling with the U.S. EPA's general water quality model, WASP (Water Quality Analysis Simulation Program). WASP features include a user-friendly Windows-based interfa...

  20. Thermal Transport Model for Heat Sink Design

    NASA Technical Reports Server (NTRS)

    Chervenak, James A.; Kelley, Richard L.; Brown, Ari D.; Smith, Stephen J.; Kilbourne, Caroline a.

    2009-01-01

    A document discusses the development of a finite element model for describing thermal transport through microcalorimeter arrays in order to assist in heat-sinking design. A fabricated multi-absorber transition edge sensor (PoST) was designed in order to reduce device wiring density by a factor of four. The finite element model consists of breaking the microcalorimeter array into separate elements, including the transition edge sensor (TES) and the silicon substrate on which the sensor is deposited. Each element is then broken up into subelements, whose surface area subtends 10 10 microns. The heat capacity per unit temperature, thermal conductance, and thermal diffusivity of each subelement are the model inputs, as are the temperatures of each subelement. Numerical integration using the Finite in Time Centered in Space algorithm of the thermal diffusion equation is then performed in order to obtain a temporal evolution of the subelement temperature. Thermal transport across interfaces is modeled using a thermal boundary resistance obtained using the acoustic mismatch model. The document concludes with a discussion of the PoST fabrication. PoSTs are novel because they enable incident x-ray position sensitivity with good energy resolution and low wiring density.

  1. Understanding transport in model water desalination membranes

    NASA Astrophysics Data System (ADS)

    Chan, Edwin

    Polyamide based thin film composites represent the the state-of-the-art nanofiltration and reverse osmosis membranes used in water desalination. The performance of these membranes is enabled by the ultrathin (~100 nm) crosslinked polyamide film in facilitating the selective transport of water over salt ions. While these materials have been refined over the last several decades, understanding the relationships between polyamide structure and membrane performance remains a challenge because of the complex and heterogeneous nature of the polyamide film. In this contribution, we present our approach to addressing this challenge by studying the transport properties of model polyamide membranes synthesized via molecular layer-by-layer (mLbL) assembly. First, we demonstrate that mLbL can successfully construct polyamide membranes with well-defined nanoscale thickness and roughness using a variety of monomer formulations. Next, we present measurement tools for characterizing the network structure and transport of these model polyamide membranes. Specifically, we used X-ray and neutron scattering techniques to characterize their structure as well as a recently-developed indentation based poromechanics approach to extrapolate their water diffusion coefficient. Finally, we illustrate how these measurements can provide insight into the original problem by linking the key polyamide network properties, i.e. water-polyamide interaction parameter and characteristic network mesh size, to the membrane performance.

  2. A non-Linear transport model for determining shale rock characteristics

    NASA Astrophysics Data System (ADS)

    Ali, Iftikhar; Malik, Nadeem

    2016-04-01

    Unconventional hydrocarbon reservoirs consist of tight porous rocks which are characterised by nano-scale size porous networks with ultra-low permeability [1,2]. Transport of gas through them is not well understood at the present time, and realistic transport models are needed in order to determine rock properties and for estimating future gas pressure distribution in the reservoirs. Here, we consider a recently developed non-linear gas transport equation [3], ∂p-+ U ∂p- = D ∂2p-, t > 0, (1) ∂t ∂x ∂x2 complimented with suitable initial and boundary conditions, in order to determine shale rock properties such as the permeability K, the porosity φ and the tortuosity, τ. In our new model, the apparent convection velocity, U = U(p,px), and the apparent diffusivity D = D(p), are both highly non-linear functions of the pressure. The model incorporate various flow regimes (slip, surface diffusion, transition, continuum) based upon the Knudsen number Kn, and also includes Forchchiemers turbulence correction terms. In application, the model parameters and associated compressibility factors are fully pressure dependent, giving the model more realism than previous models. See [4]. Rock properties are determined by solving an inverse problem, with model parameters adjustment to minimise the error between the model simulation and available data. It is has been found that the proposed model performs better than previous models. Results and details of the model will be presented at the conference. Corresponding author: namalik@kfupm.edu.sa and nadeem_malik@cantab.net References [1] Cui, X., Bustin, A.M. and Bustin, R., "Measurements of gas permeability and diffusivity of tight reservoir rocks: different approaches and their applications", Geofluids 9, 208-223 (2009). [2] Chiba R., Fomin S., Chugunov V., Niibori Y. and Hashida T., "Numerical Simulation of Non Fickian Diffusion and Advection in a Fractured Porous Aquifer", AIP Conference Proceedings 898, 75 (2007

  3. Transport Model of Underground Sediment in Soils

    PubMed Central

    Guangqian, Wang

    2013-01-01

    Studies about sediment erosion were mainly concentrated on the river channel sediment, the terrestrial sediment, and the underground sediment. The transport process of underground sediment is studied in the paper. The concept of the flush potential sediment is founded. The transport equation with stable saturated seepage is set up, and the relations between the flush potential sediment and water sediment are discussed. Flushing of underground sediment begins with small particles, and large particles will be taken away later. The pore ratio of the soil increases gradually. The flow ultimately becomes direct water seepage, and the sediment concentration at the same position in the water decreases over time. The concentration of maximal flushing potential sediment decreases along the path. The underground sediment flushing model reflects the flushing mechanism of underground sediment. PMID:24288479

  4. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

    USGS Publications Warehouse

    Bachand, P.A.M.; S. Bachand,; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

    2014-01-01

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal

  5. Modeling the combined influence of host dispersal and waterborne fate and transport on pathogen spread in complex landscapes

    PubMed Central

    Lu, Ding; McDowell, Julia Z.; Davis, George M.; Spear, Robert C.; Remais, Justin V.

    2012-01-01

    Environmental models, often applied to questions on the fate and transport of chemical hazards, have recently become important in tracing certain environmental pathogens to their upstream sources of contamination. These tools, such as first order decay models applied to contaminants in surface waters, offer promise for quantifying the fate and transport of pathogens with multiple environmental stages and/or multiple hosts, in addition to those pathogens whose environmental stages are entirely waterborne. Here we consider the fate and transport capabilities of the human schistosome Schistosoma japonicum, which exhibits two waterborne stages and is carried by an amphibious intermediate snail host. We present experimentally-derived dispersal estimates for the intermediate snail host and fate and transport estimates for the passive downstream diffusion of cercariae, the waterborne, human-infective parasite stage. Using a one dimensional advective transport model exhibiting first-order decay, we simulate the added spatial reach and relative increase in cercarial concentrations that dispersing snail hosts contribute to downstream sites. Simulation results suggest that snail dispersal can substantially increase the concentrations of cercariae reaching downstream locations, relative to no snail dispersal, effectively putting otherwise isolated downstream sites at increased risk of exposure to cercariae from upstream sources. The models developed here can be applied to other infectious diseases with multiple life-stages and hosts, and have important implications for targeted ecological control of disease spread. PMID:23162675

  6. Modeling Electrical Transport through Nucleic Acids

    NASA Astrophysics Data System (ADS)

    Qi, Jianqing

    Nucleic acids play a vital role in many biological systems and activities. In recent years, engineers and scientists have been interested in studying their electrical properties. The motivation for these studies stems from the following facts: (1) the bases, which form the building blocks of nucleic acids, have unique ionization potentials. Further, nucleic acids are one of the few nanomaterials that can be reproducibly manufactured with a high degree of accuracy (though admittedly their placement at desired locations remains a challenge). As a result, designed strands with specific sequences may offer unique device properties; (2) electrical methods offer potential for sequencing nucleic acids based on a single molecule; (3) electrical methods for disease detection based on the current flowing through nucleic acids are beginning to be demonstrated. While experiments in the above mentioned areas is promising, a deeper understanding of the electrical current flow through the nucleic acids needs to be developed. The modeling of current flowing in these molecules is complex because: (1) they are based on atomic scale contacts between nucleic acids and metal, which cannot be reproducibly built; (2) the conductivity of nucleic acids is easily influenced by the environment, which is constantly changing; and (3) the nucleic acids by themselves are floppy. This thesis focuses on the modeling of electrical transport through nucleic acids that are connected to two metal electrodes at nanoscale. We first develop a decoherent transport model for the double-stranded helix based on the Landauer-Buttiker framework. This model is rationalized by comparison with an experiment that measured the conductance of four different DNA strands. The developed model is then used to study the: (1) potential to make barriers and wells for quantum transport using specifically engineered sequences; (2) change in the electrical properties of a specific DNA strand with and without methylation; (3

  7. Io Volcanism: Modeling Vapor And Heat Transport

    NASA Astrophysics Data System (ADS)

    Allen, Daniel R.; Howell, R. R.

    2010-10-01

    Loki is a large, active volcanic source on Jupiter's moon, Io, whose overall temperatures are well explained by current cooling models, but there are unexplainable subtleties. Using the SO2 atmospheric models of Ingersoll (1989) as a starting point, we are investigating how volatiles, specifically sulfur, are transported on the surface and how they modify the temperatures at Loki and other volcanoes. Voyager images reveal light colored deposits, colloquially called "sulfur bergs,” on Loki's dark patera floor that may be sulfur fumaroles. Galileo images show the presence of red short-chain sulfur deposits around the patera. We are investigating the mechanisms that lead to these features. The light deposits are a few kilometers across. Calculations of the mean free paths for day time conditions on Io indicate lengths on the order of 0.1 km while poorly constrained night time conditions indicate mean free paths about 100 times greater, on the order of what is needed to produce the deposits under ballistic conditions. Preliminary calculations reveal horizontal transport length scales for diffuse transport in a collisional atmosphere of approximately 30 km for sublimating S8 sulfur at 300 K. These length scales would be sufficient to move the sulfur from the warm patera floor to the locations of the red sulfur deposits. At a typical Loki temperature of 300 K, the sublimation/evaporation rate of S8 is a few tens of microns/day. It then requires just a few days to deposit an optically thick 100 µm layer of material. Preliminary length scales and sublimation rates are thus of sufficient scale to produce the deposits. Investigations into the sulfur transport and its effect on temperature are ongoing.

  8. 3 Lectures: "Lagrangian Models", "Numerical Transport Schemes", and "Chemical and Transport Models"

    NASA Technical Reports Server (NTRS)

    Douglass, A.

    2005-01-01

    The topics for the three lectures for the Canadian Summer School are Lagrangian Models, numerical transport schemes, and chemical and transport models. In the first lecture I will explain the basic components of the Lagrangian model (a trajectory code and a photochemical code), the difficulties in using such a model (initialization) and show some applications in interpretation of aircraft and satellite data. If time permits I will show some results concerning inverse modeling which is being used to evaluate sources of tropospheric pollutants. In the second lecture I will discuss one of the core components of any grid point model, the numerical transport scheme. I will explain the basics of shock capturing schemes, and performance criteria. I will include an example of the importance of horizontal resolution to polar processes. We have learned from NASA's global modeling initiative that horizontal resolution matters for predictions of the future evolution of the ozone hole. The numerical scheme will be evaluated using performance metrics based on satellite observations of long-lived tracers. The final lecture will discuss the evolution of chemical transport models over the last decade. Some of the problems with assimilated winds will be demonstrated, using satellite data to evaluate the simulations.

  9. Differential patterns of divergence in ocean drifters: Implications for larval flatfish advection and recruitment

    NASA Astrophysics Data System (ADS)

    Wilderbuer, Thomas; Duffy-Anderson, Janet T.; Stabeno, Phyllis; Hermann, Albert

    2016-05-01

    effect on horizontal eddy diffusion, increasing its value by a factor of five in the case of fixed-depth floats, as compared with a factor of two in the case of neutrally buoyant floats. Further, the incorporation of diurnal vertical behavior in phase with favorable (on shelf) tides transported the "larvae" ~ 400 km within 40 days of their release date. Empirical drifter data coupled with model evidence suggest that semi-diurnal tidal forcing is the primary mechanism of eastward advection over the Bering Sea shelf, and larval observational data suggest that northern rock sole larvae can maximize their eastward transport to nursery grounds by synchronizing their vertical movements to tidal periodicity during the postflexion stage.

  10. DCPT v1.0 - New particle tracker for modeling transport in dual-continuum - User's Manual

    SciTech Connect

    Pan, Lehua; Liu, Hui Hai; Cushey, Mark; Bodvarsson, Gudmundur

    2001-04-01

    DCPT (Dual-Continuum Particle Tracker) V1.0 is a new software for simulating solute transport in the subsurface. It is based on the random-walk method for modeling transport processes such as advection, dispersion/diffusion, linear sorption, radioactive decay, and fracture-matrix mass exchange (in fractured porous media). The user shall provide flow-field and other parameters in the form of input files. In Comparison to several analytical and numerical solutions for a number of test cases, DCPT shows excellent performance in both accuracy and efficiency. This report serves as a user's manual of DCPT V1.0. It includes theoretical basis, numerical methods, software structure, input/output description, and examples.

  11. Can contaminant transport models predict breakthrough?

    USGS Publications Warehouse

    Peng, Wei-Shyuan; Hampton, Duane R.; Konikow, Leonard F.; Kambham, Kiran; Benegar, Jeffery J.

    2000-01-01

    A solute breakthrough curve measured during a two-well tracer test was successfully predicted in 1986 using specialized contaminant transport models. Water was injected into a confined, unconsolidated sand aquifer and pumped out 125 feet (38.3 m) away at the same steady rate. The injected water was spiked with bromide for over three days; the outflow concentration was monitored for a month. Based on previous tests, the horizontal hydraulic conductivity of the thick aquifer varied by a factor of seven among 12 layers. Assuming stratified flow with small dispersivities, two research groups accurately predicted breakthrough with three-dimensional (12-layer) models using curvilinear elements following the arc-shaped flowlines in this test. Can contaminant transport models commonly used in industry, that use rectangular blocks, also reproduce this breakthrough curve? The two-well test was simulated with four MODFLOW-based models, MT3D (FD and HMOC options), MODFLOWT, MOC3D, and MODFLOW-SURFACT. Using the same 12 layers and small dispersivity used in the successful 1986 simulations, these models fit almost as accurately as the models using curvilinear blocks. Subtle variations in the curves illustrate differences among the codes. Sensitivities of the results to number and size of grid blocks, number of layers, boundary conditions, and values of dispersivity and porosity are briefly presented. The fit between calculated and measured breakthrough curves degenerated as the number of layers and/or grid blocks decreased, reflecting a loss of model predictive power as the level of characterization lessened. Therefore, the breakthrough curve for most field sites can be predicted only qualitatively due to limited characterization of the hydrogeology and contaminant source strength.

  12. Kinetic parameter estimation in N. europaea biofilms using a 2-D reactive transport model.

    PubMed

    Lauchnor, Ellen G; Semprini, Lewis; Wood, Brian D

    2015-06-01

    Biofilms of the ammonia oxidizing bacterium Nitrosomonas europaea were cultivated to study microbial processes associated with ammonia oxidation in pure culture. We explored the hypothesis that the kinetic parameters of ammonia oxidation in N. europaea biofilms were in the range of those determined with batch suspended cells. Oxygen and pH microelectrodes were used to measure dissolved oxygen (DO) concentrations and pH above and inside biofilms and reactive transport modeling was performed to simulate the measured DO and pH profiles. A two dimensional (2-D) model was used to simulate advection parallel to the biofilm surface and diffusion through the overlying fluid while reaction and diffusion were simulated in the biofilm. Three experimental studies of microsensor measurements were performed with biofilms: i) NH3 concentrations near the Ksn value of 40 μM determined in suspended cell tests ii) Limited buffering capacity which resulted in a pH gradient within the biofilms and iii) NH3 concentrations well below the Ksn value. Very good fits to the DO concentration profiles both in the fluid above and in the biofilms were achieved using the 2-D model. The modeling study revealed that the half-saturation coefficient for NH3 in N. europaea biofilms was close to the value measured in suspended cells. However, the third study of biofilms with low availability of NH3 deviated from the model prediction. The model also predicted shifts in the DO profiles and the gradient in pH that resulted for the case of limited buffering capacity. The results illustrate the importance of incorporating both key transport and chemical processes in a biofilm reactive transport model.

  13. Risk management model in road transport systems

    NASA Astrophysics Data System (ADS)

    Sakhapov, R. L.; Nikolaeva, R. V.; Gatiyatullin, M. H.; Makhmutov, M. M.

    2016-08-01

    The article presents the results of a study of road safety indicators that influence the development and operation of the transport system. Road safety is considered as a continuous process of risk management. Authors constructed a model that relates the social risks of a major road safety indicator - the level of motorization. The model gives a fairly accurate assessment of the level of social risk for any given level of motorization. Authors calculated the dependence of the level of socio-economic costs of accidents and injured people in them. The applicability of the concept of socio-economic damage is caused by the presence of a linear relationship between the natural and economic indicators damage from accidents. The optimization of social risk is reduced to finding the extremum of the objective function that characterizes the economic effect of the implementation of measures to improve safety. The calculations make it possible to maximize the net present value, depending on the costs of improving road safety, taking into account socio-economic damage caused by accidents. The proposed econometric models make it possible to quantify the efficiency of the transportation system, allow to simulate the change in road safety indicators.

  14. DEVELOPMENT AND DEMONSTRATION OF A BIDIRECTIONAL ADVECTIVE FLUX METER FOR SEDIMENT-WATER INTERFACE

    EPA Science Inventory

    A bidirectional advective flux meter for measuring water transport across the sediment-water interface has been successfully developed and field tested. The flow sensor employs a heat-pulse technique combined with a flow collection funnel for the flow measurement. Because the dir...

  15. A space transportation system operations model

    NASA Technical Reports Server (NTRS)

    Morris, W. Douglas; White, Nancy H.

    1987-01-01

    Presented is a description of a computer program which permits assessment of the operational support requirements of space transportation systems functioning in both a ground- and space-based environment. The scenario depicted provides for the delivery of payloads from Earth to a space station and beyond using upper stages based at the station. Model results are scenario dependent and rely on the input definitions of delivery requirements, task times, and available resources. Output is in terms of flight rate capabilities, resource requirements, and facility utilization. A general program description, program listing, input requirements, and sample output are included.

  16. Hydrogen Sorption and Transport

    NASA Astrophysics Data System (ADS)

    McNeece, C. J.; Hesse, M. A.

    2015-12-01

    Hydrogen is unique among aqueous ions, both in its importance for geochemical reactions, and in its complex transport behavior through reactive media. The structure of hydrogen reaction fronts can be analyzed in the advective limit of the transport equation. At local chemical equilibrium, sorption of hydrogen onto the media surface (sorption isotherm) controls reaction front morphology. Transport modeling thus necessitates accurate knowledge of surface chemistry. Though motivated by transport, sorption models are often parameterized against batch titration experiments. The validity of these parameterizations, in a transport setting, are seldom tested. The analytic solution to the transport equation gives an algebraic relationship between concentration velocity and equilibrium sorption behavior. In this study, we conduct a suite of column flow experiments through quartz sand. Hydrogen concentration breakthrough curves at the column outlet are used to infer the "transport sorption isotherm." These results are compared to the batch titration derived sorption isotherm. We find excellent agreement between the datasets. Our findings suggest that, for aqueous hydrogen, local chemical equilibrium is a valid assumption. With the goal of a predictive transport model, we parameterize various sorption models against this dataset. Models which incorporate electrostatic effects at the surface predict transport well. Nonelectrostatic models such as the Kd, Langmuir, and Freundlich models fail. These results are particularly compelling as nonelectrostatic models are often employed to predict hydrogen transport in many reactive transport code.

  17. Theoretical and Numerical Modeling of Transport of Land Use-Specific Fecal Source Identifiers

    NASA Astrophysics Data System (ADS)

    Bombardelli, F. A.; Sirikanchana, K. J.; Bae, S.; Wuertz, S.

    2008-12-01

    Microbial contamination in coastal and estuarine waters is of particular concern to public health officials. In this work, we advocate that well-formulated and developed mathematical and numerical transport models can be combined with modern molecular techniques in order to predict continuous concentrations of microbial indicators under diverse scenarios of interest, and that they can help in source identification of fecal pollution. As a proof of concept, we present initially the theory, numerical implementation and validation of one- and two-dimensional numerical models aimed at computing the distribution of fecal source identifiers in water bodies (based on Bacteroidales marker DNA sequences) coming from different land uses such as wildlife, livestock, humans, dogs or cats. These models have been developed to allow for source identification of fecal contamination in large bodies of water. We test the model predictions using diverse velocity fields and boundary conditions. Then, we present some preliminary results of an application of a three-dimensional water quality model to address the source of fecal contamination in the San Pablo Bay (SPB), United States, which constitutes an important sub-embayment of the San Francisco Bay. The transport equations for Bacteroidales include the processes of advection, diffusion, and decay of Bacteroidales. We discuss the validation of the developed models through comparisons of numerical results with field campaigns developed in the SPB. We determine the extent and importance of the contamination in the bay for two decay rates obtained from field observations, corresponding to total host-specific Bacteroidales DNA and host-specific viable Bacteroidales cells, respectively. Finally, we infer transport conditions in the SPB based on the numerical results, characterizing the fate of outflows coming from the Napa, Petaluma and Sonoma rivers.

  18. Estimation of transport parameters of phenolic compounds and inorganic contaminants through composite landfill liners using one-dimensional mass transport model

    SciTech Connect

    Varank, Gamze; Demir, Ahmet; Yetilmezsoy, Kaan; Bilgili, M. Sinan; Top, Selin; Sekman, Elif

    2011-11-15

    Highlights: > We conduct 1D advection-dispersion modeling to estimate transport parameters. > We examine fourteen phenolic compounds and three inorganic contaminants. > 2-MP, 2,4-DCP, 2,6-DCP, 2,4,5-TCP, 2,3,4,6-TeCP have the highest coefficients. > Dispersion coefficients of Cu are determined to be higher than Zn and Fe. > Transport of phenolics can be prevented by zeolite and bentonite in landfill liners. - Abstract: One-dimensional (1D) advection-dispersion transport modeling was conducted as a conceptual approach for the estimation of the transport parameters of fourteen different phenolic compounds (phenol, 2-CP, 2-MP, 3-MP, 4-MP, 2-NP, 4-NP, 2,4-DNP, 2,4-DCP, 2,6-DCP, 2,4,5-TCP, 2,4,6-TCP, 2,3,4,6-TeCP, PCP) and three different inorganic contaminants (Cu, Zn, Fe) migrating downward through the several liner systems. Four identical pilot-scale landfill reactors (0.25 m{sup 3}) with different composite liners (R1: 0.10 + 0.10 m of compacted clay liner (CCL), L{sub e} = 0.20 m, k{sub e} = 1 x 10{sup -8} m/s, R2: 0.002-m-thick damaged high-density polyethylene (HDPE) geomembrane overlying 0.10 + 0.10 m of CCL, L{sub e} = 0.20 m, k{sub e} = 1 x 10{sup -8} m/s, R3: 0.002-m-thick damaged HDPE geomembrane overlying a 0.02-m-thick bentonite layer encapsulated between 0.10 + 0.10 m CCL, L{sub e} = 0.22 m, k{sub e} = 1 x 10{sup -8} m/s, R4: 0.002-m-thick damaged HDPE geomembrane overlying a 0.02-m-thick zeolite layer encapsulated between 0.10 + 0.10 m CCL, L{sub e} = 0.22 m, k{sub e} = 4.24 x 10{sup -7} m/s) were simultaneously run for a period of about 540 days to investigate the nature of diffusive and advective transport of the selected organic and inorganic contaminants. The results of 1D transport model showed that the highest molecular diffusion coefficients, ranging from 4.77 x 10{sup -10} to 10.67 x 10{sup -10} m{sup 2}/s, were estimated for phenol (R4), 2-MP (R1), 2,4-DNP (R2), 2,4-DCP (R1), 2,6-DCP (R2), 2,4,5-TCP (R2) and 2,3,4,6-TeCP (R1). For all reactors

  19. Conceptual and Numerical Models for UZ Flow and Transport

    SciTech Connect

    H. Liu

    2000-03-03

    The purpose of this Analysis/Model Report (AMR) is to document the conceptual and numerical models used for modeling of unsaturated zone (UZ) fluid (water and air) flow and solute transport processes. This is in accordance with ''AMR Development Plan for U0030 Conceptual and Numerical Models for Unsaturated Zone (UZ) Flow and Transport Processes, Rev 00''. The conceptual and numerical modeling approaches described in this AMR are used for models of UZ flow and transport in fractured, unsaturated rock under ambient and thermal conditions, which are documented in separate AMRs. This AMR supports the UZ Flow and Transport Process Model Report (PMR), the Near Field Environment PMR, and the following models: Calibrated Properties Model; UZ Flow Models and Submodels; Mountain-Scale Coupled Processes Model; Thermal-Hydrologic-Chemical (THC) Seepage Model; Drift Scale Test (DST) THC Model; Seepage Model for Performance Assessment (PA); and UZ Radionuclide Transport Models.

  20. Ballistic transport in Saturn's rings - An analytic theory

    NASA Technical Reports Server (NTRS)

    Lissauer, J. J.

    1984-01-01

    Ejecta from impacts of micrometeoroids on Saturn's ring particles will, in most cases, remain in orbit about Saturn and eventually be reaccreted by the rings, possibly at a different radial location. The resulting mass transport has been suggested as the cause of some of the features observed in Saturn's rings. Previous attempts to model this transport have used numerical simulations which have not included the effects of the angular momentum transport coincident with mass transport. An analytical model for ballistic mass transport in Saturn's rings is developed. The model includes the effects of angular momentum advection and shows that the net material movement due to angular momentum advection is comparable to that caused by direct ballistic mass transport.

  1. Using PHREEQC to simulate solute transport in fractured bedrock.

    PubMed

    Lipson, David S; McCray, John E; Thyne, Geoffrey D

    2007-01-01

    The geochemical computer model PHREEQC can simulate solute transport in fractured bedrock aquifers that can be conceptualized as dual-porosity flow systems subject to one-dimensional advective-dispersive transport in the bedrock fractures and diffusive transport in the bedrock matrix. This article demonstrates how the physical characteristics of such flow systems can be parameterized for use in PHREEQC, it provides a method for minimizing numerical dispersion in PHREEQC simulations, and it compares PHREEQC simulations with results of an analytical solution. The simulations assumed a dual-porosity conceptual model involving advective-reactive-dispersive transport in the mobile zone (bedrock fracture) and diffusive-reactive transport in the immobile zone (bedrock matrix). The results from the PHREEQC dual-porosity transport model that uses a finite-difference approach showed excellent agreement compared with an analytical solution.

  2. Distributed Parallel Particle Advection using Work Requesting

    SciTech Connect

    Muller, Cornelius; Camp, David; Hentschel, Bernd; Garth, Christoph

    2013-09-30

    Particle advection is an important vector field visualization technique that is difficult to apply to very large data sets in a distributed setting due to scalability limitations in existing algorithms. In this paper, we report on several experiments using work requesting dynamic scheduling which achieves balanced work distribution on arbitrary problems with minimal communication overhead. We present a corresponding prototype implementation, provide and analyze benchmark results, and compare our results to an existing algorithm.

  3. Model of reversible vesicular transport with exclusion

    NASA Astrophysics Data System (ADS)

    Bressloff, Paul C.; Karamched, Bhargav R.

    2016-08-01

    A major question in neurobiology concerns the mechanics behind the motor-driven transport and delivery of vesicles to synaptic targets along the axon of a neuron. Experimental evidence suggests that the distribution of vesicles along the axon is relatively uniform and that vesicular delivery to synapses is reversible. A recent modeling study has made explicit the crucial role that reversibility in vesicular delivery to synapses plays in achieving uniformity in vesicle distribution, so called synaptic democracy (Bressloff et al 2015 Phys. Rev. Lett. 114 168101). In this paper we generalize the previous model by accounting for exclusion effects (hard-core repulsion) that may occur between molecular motor-cargo complexes (particles) moving along the same microtubule track. The resulting model takes the form of an exclusion process with four internal states, which distinguish between motile and stationary particles, and whether or not a particle is carrying vesicles. By applying a mean field approximation and an adiabatic approximation we reduce the system of ODEs describing the evolution of occupation numbers of the sites on a 1D lattice to a system of hydrodynamic equations in the continuum limit. We find that reversibility in vesicular delivery allows for synaptic democracy even in the presence of exclusion effects, although exclusion does exacerbate nonuniform distributions of vesicles in an axon when compared with a model without exclusion. We also uncover the relationship between our model and other models of exclusion processes with internal states.

  4. Space-fractional advection-diffusion and reflective boundary condition.

    PubMed

    Krepysheva, Natalia; Di Pietro, Liliana; Néel, Marie-Christine

    2006-02-01

    Anomalous diffusive transport arises in a large diversity of disordered media. Stochastic formulations in terms of continuous time random walks (CTRWs) with transition probability densities showing space- and/or time-diverging moments were developed to account for anomalous behaviors. A broad class of CTRWs was shown to correspond, on the macroscopic scale, to advection-diffusion equations involving derivatives of noninteger order. In particular, CTRWs with Lévy distribution of jumps and finite mean waiting time lead to a space-fractional equation that accounts for superdiffusion and involves a nonlocal integral-differential operator. Within this framework, we analyze the evolution of particles performing symmetric Lévy flights with respect to a fluid moving at uniform speed . The particles are restricted to a semi-infinite domain limited by a reflective barrier. We show that the introduction of the boundary condition induces a modification in the kernel of the nonlocal operator. Thus, the macroscopic space-fractional advection-diffusion equation obtained is different from that in an infinite medium.

  5. High Order Semi-Lagrangian Advection Scheme

    NASA Astrophysics Data System (ADS)

    Malaga, Carlos; Mandujano, Francisco; Becerra, Julian

    2014-11-01

    In most fluid phenomena, advection plays an important roll. A numerical scheme capable of making quantitative predictions and simulations must compute correctly the advection terms appearing in the equations governing fluid flow. Here we present a high order forward semi-Lagrangian numerical scheme specifically tailored to compute material derivatives. The scheme relies on the geometrical interpretation of material derivatives to compute the time evolution of fields on grids that deform with the material fluid domain, an interpolating procedure of arbitrary order that preserves the moments of the interpolated distributions, and a nonlinear mapping strategy to perform interpolations between undeformed and deformed grids. Additionally, a discontinuity criterion was implemented to deal with discontinuous fields and shocks. Tests of pure advection, shock formation and nonlinear phenomena are presented to show performance and convergence of the scheme. The high computational cost is considerably reduced when implemented on massively parallel architectures found in graphic cards. The authors acknowledge funding from Fondo Sectorial CONACYT-SENER Grant Number 42536 (DGAJ-SPI-34-170412-217).

  6. Experimental & Numerical Modeling of Non-combusting Model Firebrands' Transport

    NASA Astrophysics Data System (ADS)

    Tohidi, Ali; Kaye, Nigel

    2016-11-01

    Fire spotting is one of the major mechanisms of wildfire spread. Three phases of this phenomenon are firebrand formation and break-off from burning vegetation, lofting and downwind transport of firebrands through the velocity field of the wildfire, and spot fire ignition upon landing. The lofting and downwind transport phase is modeled by conducting large-scale wind tunnel experiments. Non-combusting rod-like model firebrands with different aspect ratios are released within the velocity field of a jet in a boundary layer cross-flow that approximates the wildfire velocity field. Characteristics of the firebrand dispersion are quantified by capturing the full trajectory of the model firebrands using the developed image processing algorithm. The results show that the lofting height has a direct impact on the maximum travel distance of the model firebrands. Also, the experimental results are utilized for validation of a highly scalable coupled stochastic & parametric firebrand flight model that, couples the LES-resolved velocity field of a jet-in-nonuniform-cross-flow (JINCF) with a 3D fully deterministic 6-degrees-of-freedom debris transport model. The validation results show that the developed numerical model is capable of estimating average statistics of the firebrands' flight. Authors would like to thank support of the National Science Foundation under Grant No. 1200560. Also, the presenter (Ali Tohid) would like to thank Dr. Michael Gollner from the University of Maryland College Park for the conference participation support.

  7. Modeling photon transport in transabdominal fetal oximetry

    NASA Astrophysics Data System (ADS)

    Jacques, Steven L.; Ramanujam, Nirmala; Vishnoi, Gargi; Choe, Regine; Chance, Britton

    2000-07-01

    The possibility of optical oximetry of the blood in the fetal brain measured across the maternal abdomen just prior to birth is under investigated. Such measurements could detect fetal distress prior to birth and aid in the clinical decision regarding Cesarean section. This paper uses a perturbation method to model photon transport through a 8- cm-diam fetal brain located at a constant 2.5 cm below a curved maternal abdominal surface with an air/tissue boundary. In the simulation, a near-infrared light source delivers light to the abdomen and a detector is positioned up to 10 cm from the source along the arc of the abdominal surface. The light transport [W/cm2 fluence rate per W incident power] collected at the 10 cm position is Tm equals 2.2 X 10-6 cm-2 if the fetal brain has the same optical properties as the mother and Tf equals 1.0 X 10MIN6 cm-2 for an optically perturbing fetal brain with typical brain optical properties. The perturbation P equals (Tf - Tm)/Tm is -53% due to the fetal brain. The model illustrates the challenge and feasibility of transabdominal oximetry of the fetal brain.

  8. Modeling the quasistatic energy transport between nanoparticles

    NASA Astrophysics Data System (ADS)

    Panasyuk, George Y.; Yerkes, Kirk L.

    2015-12-01

    We consider phononic energy transport between nanoparticles mediated by a quantum particle. The nanoparticles are considered as thermal reservoirs described by ensembles of finite numbers of harmonic oscillators within the Drude-Ullersma model having, in general, unequal mode spacings Δ1 and Δ2, which amount to different numbers of atoms in the nanoparticles. The quasistatic energy transport between the nanoparticles on the time scale t ˜1 /Δ1 ,2 is investigated using the generalized quantum Langevin equation. We find that double degeneracy of system's eigenfrequencies, which occurs in the case of identical nanoparticles, is removed when the mode spacings become unequal. The equations describing the dynamics of the averaged eigenmode energies are derived and solved, and the resulting expression for the energy current between the nanoparticles is obtained and explored. Unlike the case when the thermodynamic limit is assumed resulting in time-independent energy current, finite-size effects result in temporal behavior of the energy current that evinces reversibility features combined with decay and possesses peculiarities at time moments t =2 π n /Δ1+2 π m /Δ2 for non-negative integers n and m . When Δ1 ,2→0 , an expression for the heat current obtained previously under assumption of the thermodynamic limit is reproduced. The energy current between two platinum nanoparticles mediated by a carbon oxide molecule is considered as an application of the developed model.

  9. Modeling the quasistatic energy transport between nanoparticles.

    PubMed

    Panasyuk, George Y; Yerkes, Kirk L

    2015-12-01

    We consider phononic energy transport between nanoparticles mediated by a quantum particle. The nanoparticles are considered as thermal reservoirs described by ensembles of finite numbers of harmonic oscillators within the Drude-Ullersma model having, in general, unequal mode spacings Δ(1) and Δ(2), which amount to different numbers of atoms in the nanoparticles. The quasistatic energy transport between the nanoparticles on the time scale t∼1/Δ(1,2) is investigated using the generalized quantum Langevin equation. We find that double degeneracy of system's eigenfrequencies, which occurs in the case of identical nanoparticles, is removed when the mode spacings become unequal. The equations describing the dynamics of the averaged eigenmode energies are derived and solved, and the resulting expression for the energy current between the nanoparticles is obtained and explored. Unlike the case when the thermodynamic limit is assumed resulting in time-independent energy current, finite-size effects result in temporal behavior of the energy current that evinces reversibility features combined with decay and possesses peculiarities at time moments t=2πn/Δ(1)+2πm/Δ(2) for non-negative integers n and m. When Δ(1,2)→0, an expression for the heat current obtained previously under assumption of the thermodynamic limit is reproduced. The energy current between two platinum nanoparticles mediated by a carbon oxide molecule is considered as an application of the developed model.

  10. Modeling Tokamak Transport with Neural-Network Based Models

    NASA Astrophysics Data System (ADS)

    Meneghini, O.; Luna, C.; Penna, J.; Smith, S. P.; Lao, L. L.

    2014-10-01

    This work uses neural networks (NNs) as a means to extract information from the massive volume of aggregated data that are available either from experiments or from simulation databases, and distill an accurate transport model for the heat, particle, and momentum transport fluxes as a function of local dimensionless plasma parameters. The resulting model has been benchmarked with over 4000 DIII-D plasmas in different regimes, and it is able to capture the experimental behavior inside of ρ < 0 . 95 with average error <20% for all transport channels. The NN model was embedded into the ONETWO transport code and is now being used to develop time-dependent scenarios in support of DIII-D operations. The simulated temperature, density and rotation profiles closely match the experimental measurements, and a stiff response of the heat fluxes has been observed in the model for increasing source power. The numerical efficiency of the NN approach makes it ideal for real time plasma control and scenario preparation for current experiments and for ITER. Work supported in part by the US DOE under DE-FG02-95ER54309 and DE-FC02-04ER54698.

  11. Documentation of TRU biological transport model (BIOTRAN)

    SciTech Connect

    Gallegos, A.F.; Garcia, B.J.; Sutton, C.M.

    1980-01-01

    Inclusive of Appendices, this document describes the purpose, rationale, construction, and operation of a biological transport model (BIOTRAN). This model is used to predict the flow of transuranic elements (TRU) through specified plant and animal environments using biomass as a vector. The appendices are: (A) Flows of moisture, biomass, and TRU; (B) Intermediate variables affecting flows; (C) Mnemonic equivalents (code) for variables; (D) Variable library (code); (E) BIOTRAN code (Fortran); (F) Plants simulated; (G) BIOTRAN code documentation; (H) Operating instructions for BIOTRAN code. The main text is presented with a specific format which uses a minimum of space, yet is adequate for tracking most relationships from their first appearance to their formulation in the code. Because relationships are treated individually in this manner, and rely heavily on Appendix material for understanding, it is advised that the reader familiarize himself with these materials before proceeding with the main text.

  12. Experiments and modeling of the transport of trichloroethene vapor in unsaturated aquifer material

    SciTech Connect

    Lorden, S.W.; Lion, L.W.; Chen, W.

    1998-07-01

    A bench-scale reactor system was used to investigate mass-transfer dynamics and transport of trichloroethene (TCE) vapor in a column of unsaturated aquifer material under conditions of advective gas flow, at 25 C and 90% relative humidity. Two gas flows and two relative vapor pressures of TCE (10% and 90% P/P{sub o}, where P is vapor pressure and P{sub o} is the saturation vapor pressure) were selected as experimental variables. Breakthrough curves were generated for week-long inputs of TCE-laden air and for short pulses of a nonsorbing tracer gas. Equilibrium sorption isotherms for TCE were also measured and used as tools for interpreting the column experiment results. Slow mass-transfer kinetics were observed in all of the transport experiments. Evidence from the breakthrough curves and the sorption isotherms suggested that, at 90% P/P{sub o}, a significant amount of TCE was condensed in pores or sorbed at the gas-water interface. Desorption and volatilization of interfacially sorbed TCE appeared to be rapid processes. The applicability of a recently developed mathematical transport model using a statistical {gamma} distribution of desorption rate constants was tested using the experimental data. The {gamma} distribution provides two adjustable parameters to account for sorption site heterogeneity and multiple mechanisms of sorption. When fit to the breakthrough curve obtained at high flow and high relative pressure, the model successfully predicted TCE frontal breakthrough and elution profiles at all other experimental conditions with no adjustable parameters. The predictive capability of the {gamma} model was shown to be superior to that of two commonly used alternative model paradigms: the two-site first-order and two-site spherical diffusion models.

  13. Development and Implementation of a Transport Method for the Transport and Reaction Simulation Engine (TaRSE) based on the Godunov-Mixed Finite Element Method

    USGS Publications Warehouse

    James, Andrew I.; Jawitz, James W.; Munoz-Carpena, Rafael

    2009-01-01

    A model to simulate transport of materials in surface water and ground water has been developed to numerically approximate solutions to the advection-dispersion equation. This model, known as the Transport and Reaction Simulation Engine (TaRSE), uses an algorithm that incorporates a time-splitting technique where the advective part of the equation is solved separately from the dispersive part. An explicit finite-volume Godunov method is used to approximate the advective part, while a mixed-finite element technique is used to approximate the dispersive part. The dispersive part uses an implicit discretization, which allows it to run stably with a larger time step than the explicit advective step. The potential exists to develop algorithms that run several advectiv